BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780771|ref|YP_003065184.1| UDP-3-O-[3-hydroxymyristoyl]
glucosamine N-acyltransferase [Candidatus Liberibacter asiaticus str.
psy62]
(347 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780771|ref|YP_003065184.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
[Candidatus Liberibacter asiaticus str. psy62]
Length = 347
Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/347 (100%), Positives = 347/347 (100%)
Query: 1 MQRLNFFVSHKGIALMKLAQSIGASLLDENFGERMIYSLSPIARASTGDISYIISRKFLN 60
MQRLNFFVSHKGIALMKLAQSIGASLLDENFGERMIYSLSPIARASTGDISYIISRKFLN
Sbjct: 1 MQRLNFFVSHKGIALMKLAQSIGASLLDENFGERMIYSLSPIARASTGDISYIISRKFLN 60
Query: 61 NIEKCKASAIICSQDIVPFIPKNIPCLLSDKPEVSFAIAGSILYPQAMHMEASSFEGGIS 120
NIEKCKASAIICSQDIVPFIPKNIPCLLSDKPEVSFAIAGSILYPQAMHMEASSFEGGIS
Sbjct: 61 NIEKCKASAIICSQDIVPFIPKNIPCLLSDKPEVSFAIAGSILYPQAMHMEASSFEGGIS 120
Query: 121 PQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIY 180
PQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIY
Sbjct: 121 PQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIY 180
Query: 181 SSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDD 240
SSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDD
Sbjct: 181 SSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDD 240
Query: 241 TIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDN 300
TIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDN
Sbjct: 241 TIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDN 300
Query: 301 VQIASKSGVLKDIPAGQQYGGMPARPIGEYLRHMVMLSKPSKYKIKR 347
VQIASKSGVLKDIPAGQQYGGMPARPIGEYLRHMVMLSKPSKYKIKR
Sbjct: 301 VQIASKSGVLKDIPAGQQYGGMPARPIGEYLRHMVMLSKPSKYKIKR 347
>gi|255764481|ref|YP_003065182.2| UDP-N-acetylglucosamine acyltransferase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 271
Score = 55.1 bits (131), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 85/186 (45%), Gaps = 12/186 (6%)
Query: 136 VIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIY-SSLIGNSVILHSGV 194
+I P+A+V G IG + +GP +G+ V IG + + + + IG+ +
Sbjct: 9 IIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMA 68
Query: 195 RIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTID---DTIIGENTKIDN 251
+G D S H V +++ K I I+RGT++ TI+G+N
Sbjct: 69 VLGGDT------QSKYHNFVGT-ELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLA 121
Query: 252 QVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLK 311
+ H+ +G G ++ + V IAG + D V+ GG + + +IG I +GV+
Sbjct: 122 NSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVH 181
Query: 312 D-IPAG 316
D IP G
Sbjct: 182 DVIPYG 187
Score = 23.9 bits (50), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 30/63 (47%)
Query: 122 QAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYS 181
+ + D K+ +G+V++ ++ V + + G GS + RIG+ IG + +
Sbjct: 122 NSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVH 181
Query: 182 SLI 184
+I
Sbjct: 182 DVI 184
>gi|254780942|ref|YP_003065355.1| UDP-N-acetylglucosamine pyrophosphorylase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 442
Score = 42.7 bits (99), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 81/224 (36%), Gaps = 66/224 (29%)
Query: 92 PEVSFAIAGSILYPQAMHMEASSFEGGISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGR 151
PE F +I+ P + I P F G V IE+ V I + + GV IG+
Sbjct: 259 PETVFLSHDTIIQPDTV----------IEPHVFFGCGVSIENYVQIRAFSYL-EGVHIGK 307
Query: 152 KTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIH 211
KT +GP + I I +N IG + + I S I+
Sbjct: 308 KTIIGPFARIRQETTIEKNVRIGNFCEVKKATIKEG--------------------SKIN 347
Query: 212 KIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQV 271
+ ++G D+++G+ NV+IG G I +
Sbjct: 348 HLSYVG----------------------DSVVGK------------NVNIGAGTITCNYD 373
Query: 272 GIAG-STYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIP 314
G T+I +N IG + + IG +AS S + +D P
Sbjct: 374 GTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSIITQDTP 417
>gi|254781223|ref|YP_003065636.1| intrrupted gp229, phage associated protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 110
Score = 27.3 bits (59), Expect = 0.35, Method: Composition-based stats.
Identities = 14/74 (18%), Positives = 34/74 (45%)
Query: 239 DDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIG 298
D+ ++ + + + ++ N + + S ++ +TY+ DN +GG ++G +G
Sbjct: 3 DNAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVG 62
Query: 299 DNVQIASKSGVLKD 312
N + + V D
Sbjct: 63 GNAIVRDTAEVGGD 76
Score = 25.4 bits (54), Expect = 1.4, Method: Composition-based stats.
Identities = 12/65 (18%), Positives = 28/65 (43%)
Query: 239 DDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIG 298
D+T + +N K+ ++ N +G I+ + G ++ +I G + G +G
Sbjct: 39 DNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVG 98
Query: 299 DNVQI 303
+ +
Sbjct: 99 GDTVV 103
Score = 24.6 bits (52), Expect = 2.6, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 11/75 (14%)
Query: 127 EDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGN 186
+D ++ ++ A V E+ TYV + +G ++ N S+G GN
Sbjct: 15 DDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVG----------GN 64
Query: 187 SVILHSGVRIGNDGF 201
+++ + +G D F
Sbjct: 65 AIVRDTA-EVGGDAF 78
>gi|254780646|ref|YP_003065059.1| 50S ribosomal protein L21 [Candidatus Liberibacter asiaticus str.
psy62]
Length = 103
Score = 23.9 bits (50), Expect = 3.9, Method: Composition-based stats.
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 231 SAIDRGTIDDTII--GENTKIDNQVQIGHNVHIGCG 264
SA D T++ + G+N + DN + +G + H+ G
Sbjct: 15 SATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLSVG 50
>gi|254780137|ref|YP_003064550.1| malic enzyme [Candidatus Liberibacter asiaticus str. psy62]
Length = 779
Score = 23.9 bits (50), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 10/50 (20%)
Query: 178 SIYSSLIGNSVILHS-GVRIGN-DGF--------GYARGVSDIHKIVHIG 217
SIY L N+ +L S ++ G DG GY ++DIHKI+ +G
Sbjct: 542 SIYDLLRSNTTLLGSLALKRGEGDGMICMCDSESGYNSHLTDIHKIIGMG 591
>gi|254780184|ref|YP_003064597.1| excinuclease ABC subunit A [Candidatus Liberibacter asiaticus str.
psy62]
Length = 959
Score = 22.7 bits (47), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 26 LLDENFGERMIYSLSPIARASTGDISYIISRKFLNNIEKCKASAIICSQDIVPFIPKNIP 85
++ EN ER++ SL + + G I+ +N EK + S D + F +N+
Sbjct: 211 VVHENIRERIVNSLRTCLQLTNGLAIATIADSTFHNDEKTSPNLSHNSSDHILF-SENLS 269
Query: 86 CLLSDKPEVSFAIA 99
C P F+IA
Sbjct: 270 C-----PVSGFSIA 278
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.320 0.140 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 227,598
Number of Sequences: 1233
Number of extensions: 10134
Number of successful extensions: 68
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 24
length of query: 347
length of database: 328,796
effective HSP length: 75
effective length of query: 272
effective length of database: 236,321
effective search space: 64279312
effective search space used: 64279312
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 39 (19.6 bits)