BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780771|ref|YP_003065184.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Candidatus Liberibacter asiaticus str. psy62] (347 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780771|ref|YP_003065184.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 347 Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/347 (100%), Positives = 347/347 (100%) Query: 1 MQRLNFFVSHKGIALMKLAQSIGASLLDENFGERMIYSLSPIARASTGDISYIISRKFLN 60 MQRLNFFVSHKGIALMKLAQSIGASLLDENFGERMIYSLSPIARASTGDISYIISRKFLN Sbjct: 1 MQRLNFFVSHKGIALMKLAQSIGASLLDENFGERMIYSLSPIARASTGDISYIISRKFLN 60 Query: 61 NIEKCKASAIICSQDIVPFIPKNIPCLLSDKPEVSFAIAGSILYPQAMHMEASSFEGGIS 120 NIEKCKASAIICSQDIVPFIPKNIPCLLSDKPEVSFAIAGSILYPQAMHMEASSFEGGIS Sbjct: 61 NIEKCKASAIICSQDIVPFIPKNIPCLLSDKPEVSFAIAGSILYPQAMHMEASSFEGGIS 120 Query: 121 PQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIY 180 PQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIY Sbjct: 121 PQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIY 180 Query: 181 SSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDD 240 SSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDD Sbjct: 181 SSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDD 240 Query: 241 TIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDN 300 TIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDN Sbjct: 241 TIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDN 300 Query: 301 VQIASKSGVLKDIPAGQQYGGMPARPIGEYLRHMVMLSKPSKYKIKR 347 VQIASKSGVLKDIPAGQQYGGMPARPIGEYLRHMVMLSKPSKYKIKR Sbjct: 301 VQIASKSGVLKDIPAGQQYGGMPARPIGEYLRHMVMLSKPSKYKIKR 347 >gi|255764481|ref|YP_003065182.2| UDP-N-acetylglucosamine acyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 271 Score = 55.1 bits (131), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 50/186 (26%), Positives = 85/186 (45%), Gaps = 12/186 (6%) Query: 136 VIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIY-SSLIGNSVILHSGV 194 +I P+A+V G IG + +GP +G+ V IG + + + + IG+ + Sbjct: 9 IIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMA 68 Query: 195 RIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTID---DTIIGENTKIDN 251 +G D S H V +++ K I I+RGT++ TI+G+N Sbjct: 69 VLGGDT------QSKYHNFVGT-ELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLA 121 Query: 252 QVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLK 311 + H+ +G G ++ + V IAG + D V+ GG + + +IG I +GV+ Sbjct: 122 NSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVH 181 Query: 312 D-IPAG 316 D IP G Sbjct: 182 DVIPYG 187 Score = 23.9 bits (50), Expect = 4.2, Method: Compositional matrix adjust. Identities = 14/63 (22%), Positives = 30/63 (47%) Query: 122 QAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYS 181 + + D K+ +G+V++ ++ V + + G GS + RIG+ IG + + Sbjct: 122 NSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVH 181 Query: 182 SLI 184 +I Sbjct: 182 DVI 184 >gi|254780942|ref|YP_003065355.1| UDP-N-acetylglucosamine pyrophosphorylase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 442 Score = 42.7 bits (99), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 52/224 (23%), Positives = 81/224 (36%), Gaps = 66/224 (29%) Query: 92 PEVSFAIAGSILYPQAMHMEASSFEGGISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGR 151 PE F +I+ P + I P F G V IE+ V I + + GV IG+ Sbjct: 259 PETVFLSHDTIIQPDTV----------IEPHVFFGCGVSIENYVQIRAFSYL-EGVHIGK 307 Query: 152 KTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIH 211 KT +GP + I I +N IG + + I S I+ Sbjct: 308 KTIIGPFARIRQETTIEKNVRIGNFCEVKKATIKEG--------------------SKIN 347 Query: 212 KIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQV 271 + ++G D+++G+ NV+IG G I + Sbjct: 348 HLSYVG----------------------DSVVGK------------NVNIGAGTITCNYD 373 Query: 272 GIAG-STYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIP 314 G T+I +N IG + + IG +AS S + +D P Sbjct: 374 GTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSIITQDTP 417 >gi|254781223|ref|YP_003065636.1| intrrupted gp229, phage associated protein [Candidatus Liberibacter asiaticus str. psy62] Length = 110 Score = 27.3 bits (59), Expect = 0.35, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 34/74 (45%) Query: 239 DDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIG 298 D+ ++ + + + ++ N + + S ++ +TY+ DN +GG ++G +G Sbjct: 3 DNAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVG 62 Query: 299 DNVQIASKSGVLKD 312 N + + V D Sbjct: 63 GNAIVRDTAEVGGD 76 Score = 25.4 bits (54), Expect = 1.4, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 28/65 (43%) Query: 239 DDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIG 298 D+T + +N K+ ++ N +G I+ + G ++ +I G + G +G Sbjct: 39 DNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVG 98 Query: 299 DNVQI 303 + + Sbjct: 99 GDTVV 103 Score = 24.6 bits (52), Expect = 2.6, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 11/75 (14%) Query: 127 EDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGN 186 +D ++ ++ A V E+ TYV + +G ++ N S+G GN Sbjct: 15 DDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVG----------GN 64 Query: 187 SVILHSGVRIGNDGF 201 +++ + +G D F Sbjct: 65 AIVRDTA-EVGGDAF 78 >gi|254780646|ref|YP_003065059.1| 50S ribosomal protein L21 [Candidatus Liberibacter asiaticus str. psy62] Length = 103 Score = 23.9 bits (50), Expect = 3.9, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%) Query: 231 SAIDRGTIDDTII--GENTKIDNQVQIGHNVHIGCG 264 SA D T++ + G+N + DN + +G + H+ G Sbjct: 15 SATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLSVG 50 >gi|254780137|ref|YP_003064550.1| malic enzyme [Candidatus Liberibacter asiaticus str. psy62] Length = 779 Score = 23.9 bits (50), Expect = 4.3, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 10/50 (20%) Query: 178 SIYSSLIGNSVILHS-GVRIGN-DGF--------GYARGVSDIHKIVHIG 217 SIY L N+ +L S ++ G DG GY ++DIHKI+ +G Sbjct: 542 SIYDLLRSNTTLLGSLALKRGEGDGMICMCDSESGYNSHLTDIHKIIGMG 591 >gi|254780184|ref|YP_003064597.1| excinuclease ABC subunit A [Candidatus Liberibacter asiaticus str. psy62] Length = 959 Score = 22.7 bits (47), Expect = 8.9, Method: Compositional matrix adjust. Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 6/74 (8%) Query: 26 LLDENFGERMIYSLSPIARASTGDISYIISRKFLNNIEKCKASAIICSQDIVPFIPKNIP 85 ++ EN ER++ SL + + G I+ +N EK + S D + F +N+ Sbjct: 211 VVHENIRERIVNSLRTCLQLTNGLAIATIADSTFHNDEKTSPNLSHNSSDHILF-SENLS 269 Query: 86 CLLSDKPEVSFAIA 99 C P F+IA Sbjct: 270 C-----PVSGFSIA 278 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.320 0.140 0.407 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 227,598 Number of Sequences: 1233 Number of extensions: 10134 Number of successful extensions: 68 Number of sequences better than 100.0: 10 Number of HSP's better than 100.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 24 length of query: 347 length of database: 328,796 effective HSP length: 75 effective length of query: 272 effective length of database: 236,321 effective search space: 64279312 effective search space used: 64279312 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 39 (19.6 bits)