HHsearch alignment for GI: 254780772 and conserved domain: TIGR02876
>TIGR02876 spore_yqfD sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown ..
Probab=97.08 E-value=0.011 Score=34.83 Aligned_cols=103 Identities=17% Similarity=0.233 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCCEEEEEEE--EECCCCCCHHHHH---HHCCCCCCCCCCHHH-HH
Q ss_conf 9999999998888999999999-999999875114652685899--9665007988999---974878988268899-99
Q gi|254780772|r 10 RIKRLLEKYFPRSFQMGFIILF-YAIFGLSAVYGSNTSIVRRIE--IRGATNVGKEVIL---SRIPVVVGQSISDAD-LD 82 (781)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~I~--i~G~~~i~~~~i~---~~~~~~~G~~~~~~~-i~ 82 (781)
T Consensus 73 G~pF~~~r~~kr~~~~~G~L~f~~~~~~lS~f-------iW~IdvrI~g~~~~~~~~i~~~L~~~G~k~Gv~k~~~Ds~~ 145 (406)
T TIGR02876 73 GLPFLIKRLRKRPGILIGILLFLAIVYLLSTF-------IWKIDVRITGVKGETEYEIRKELKEMGIKPGVKKFSIDSVY 145 (406)
T ss_pred CCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC-------EEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHH
T ss_conf 81478889885500766899999999986175-------58999997279997789999999855875683203688988
Q ss_pred HHHHHHHH-CCCCCEEEEEEECCEEEEEEEECCEE--EEE
Q ss_conf 99999996-79800389998699899999936536--579
Q gi|254780772|r 83 HAVKNIYA-MGYFSNVKIKIVDSVLIIDLIERKII--NHL 119 (781)
Q Consensus 83 ~~i~~l~~-~g~F~~v~~~~~~~~l~~~v~e~p~i--~~i 119 (781)
T Consensus 146 ~~~~~L~~~~~ei~Wv~v~~~Gt~l~~kvvEk~~~ki~~~ 185 (406)
T TIGR02876 146 KLERKLLDRVPEIMWVGVRVRGTKLVIKVVEKQEPKIKEV 185 (406)
T ss_pred HHHHHHHHCCCCEEEEEEEEECCEEEEEEEECCCCCCCCC
T ss_conf 9999998459948999999853099999982133324456