HHsearch alignment for GI: 254780772 and conserved domain: pfam01103
>pfam01103 Bac_surface_Ag Surface antigen. This entry includes the following surface antigens; D15 antigen from H.influenzae, OMA87 from P.multocida, OMP85 from N.meningitidis and N.gonorrhoeae. The family also includes a number of eukaryotic proteins that are members of the UPF0140 family. There also appears to be a relationship to pfam03865 (personal obs: C Yeats). In eukaryotes, it appears that these proteins are not surface antigens; S. cerevisiae YNL026W (SAM50) is an essential component of the Sorting and Assembly Machinery (SAM) of the mitochondrial outer membrane. The protein was localized to the mitochondria.
Probab=100.00 E-value=0 Score=410.88 Aligned_cols=309 Identities=29% Similarity=0.536 Sum_probs=264.1
Q ss_pred CCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCEEEEEEECCCCEEEEEC
Q ss_conf 3332344220037874112211113454112357775431001111333---3334323332024554202543023540
Q gi|254780772|r 466 NFFGQGYRARLAAGFGRHAVQNYTFSVEDPYFLGSPISAGFDLQKTHLE---DGSLDINDESAAVRMIVPITESISTSFK 542 (781)
Q Consensus 466 Nl~G~G~~l~l~~~~~~~~~~~~~~s~~~P~~~~~~~s~~~~~~~~~~~---~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 542 (781)
T Consensus 1 N~~G~G~~l~~~~~~~~~-~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~ 79 (317)
T pfam01103 1 NLLGRGQSLSVSLSYSQY-EQSFSLSFTDPYFLGDGLSLGYSLFYNTYDEDEYDSYDTKSVGFSLSLGYPISENWSLSLG 79 (317)
T ss_pred CCCCCCEEEEEEEEECCC-EEEEEEEEEECCCCCCCCEEEEEEEEEEEECCCCCCCEEEEEEEEEEEEEECCCCCEEEEE
T ss_conf 968878799999996755-8999999983776999928999999999985767651688776899999992788447788
Q ss_pred CCEEEEEEECCCCCCCCCHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCC--CCCCEEEEEEEEE
Q ss_conf 41257764014675442011122101585024678843215542011002465156542024565--5542036666300
Q gi|254780772|r 543 YDLRFLQYGAISEKEKIPSIYTTLIEHGKFSSHSISQSIIYNTLDNPIVPRKGMLISSSYDYAGF--GGDSQYHRIGSRA 620 (781)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~dtrD~~~~Pt~G~~~~~~~~~a~~--g~d~~f~k~~~~~ 620 (781)
T Consensus 80 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~rD~~~~Pt~G~~~~~~~~~~~~~~~~d~~f~k~~~~~ 156 (317)
T pfam01103 80 LSYSRDKIRDEDGSDN---IRNYASQTGKSLLSSLSFGLSYDTRDNGLFPTRGYYLRFNLEFAGPILGGDVKFLKLTGDA 156 (317)
T ss_pred EEEEEEEEEECCCCCC---CHHHHHCCCCEEEEEEEEEEEEECCCCCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEEEE
T ss_conf 9999999982588642---0014422883699999999999656775577621489888898035577876337899999
Q ss_pred EEEEEECCCEEEEEEEEEEEEEE--ECCCCCCCCHHEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEC
Q ss_conf 47999358809999999978985--1699741230127507897140212686155037997222147899999999614
Q gi|254780772|r 621 SYFYLLSDDSDIVGSLRFGYGCV--IPSNKNLQLFDQFSVSSNYYLRGFAYKGIGPRVDKKYAIGGKIYSSASAAVSFPM 698 (781)
Q Consensus 621 ~~y~~l~~~~~l~~~~~~g~~~~--~~~~~~lp~~erF~lGG~~svRGy~~~~iGP~~~~~~~~GG~~~~~~s~E~r~pl 698 (781)
T Consensus 157 ~~y~~l~~~~~~~l~~~~~~g~~~~~~~~~~ip~~~rF~lGG~~svRGf~~~~lgP~~~~~~~~GG~~~~~~~~E~r~pl 236 (317)
T pfam01103 157 SWYYPLGEDHDFVLAARVGLGYLLGYGAKDKLPPSERFFAGGSNSVRGYGYGSIGPRDEDGDALGGRSYFTASAELRYPL 236 (317)
T ss_pred EEEEECCCCCCEEEEEEEEEEEEECCCCCCCCCHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEC
T ss_conf 99999445873899998671187616888857966846138986435623376388766886368738999999999867
Q ss_pred CCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCCCEEE-EEEEEE
Q ss_conf 5656545379999997677415666677544456766424799999997557001589988722677876025-899964
Q gi|254780772|r 699 PLVPERAGLRGAFFVDSATLYANHVALGADKLEGNDSFWRVSTGVEIMWNSPLGMMGVYYGIPLRHREGDKIQ-QFGFRI 777 (781)
Q Consensus 699 ~~~~~~~~l~~~~F~D~G~v~~~~~~~~~~~~~~~~~~~r~s~G~Glr~~tP~Gpirld~a~pl~~~~~D~~~-~f~Fsi 777 (781)
T Consensus 237 ~~---~~~~~~~~F~D~G~~~~~~~~~~~~~~~~~~~~~~~s~G~Glr~~tP~gpi~ld~a~pl~~~~~d~~~~~f~F~i 313 (317)
T pfam01103 237 PF---IPNLRGALFVDAGNVWNSGGDTPGGSDGVRSKNIRASVGVGLRWDSPFGPLRFDYAIPLKKPDGDRTEFRFYFGI 313 (317)
T ss_pred CC---CCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCEEEEEEC
T ss_conf 88---896799999980175045677775444356787779999999997781879999998766777887220899984
Q ss_pred EECC
Q ss_conf 1059
Q gi|254780772|r 778 GNRM 781 (781)
Q Consensus 778 G~~f 781 (781)
T Consensus 314 G~~F 317 (317)
T pfam01103 314 GTEF 317 (317)
T ss_pred CCCC
T ss_conf 0569