HHsearch alignment for GI: 254780772 and conserved domain: pfam03865

>pfam03865 ShlB Haemolysin secretion/activation protein ShlB/FhaC/HecB. This family represents a group of sequences that are related to ShlB from Serratia marcescens. ShlB is an outer membrane protein pore involved in the Type Vb or Two-partner secretion system where it is functions to secrete and activate the haemolysin ShlA. The activation of ShlA occurs during secretion when ShlB imposes a conformational change in the inactive haemolysin to form the active protein.
Probab=99.94  E-value=8.2e-23  Score=166.57  Aligned_cols=342  Identities=15%  Similarity=0.104  Sum_probs=207.2

Q ss_pred             HCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCEEEECC
Q ss_conf             001000000012344456667765101234453325443565431023322112211111111---12233211000001
Q gi|254780772|r  386 ELELSEGDPINYSMIERAKRRIMATGYFSEVNISQLPANDVSDYVILRVSVKQLSAGSVGIAT---NYEVDKGMGVEGHI  462 (781)
Q Consensus       386 el~~~~Gd~~~~~~i~~s~~~L~~lg~F~~V~i~~~~~~~~~~~vdl~i~v~E~~tg~~~~g~---gys~~~g~~~~~~~  462 (781)
T Consensus        10 ~FP~~~G~~LNlrdlEQgleqlnRl~s-~~a~i~I~Pg~-~~G~S~i~i~~~~~~~~~~s~~~DN~G~~~TGr~q~~~~l   87 (404)
T pfam03865        10 LFPGIEGKPLKLAELDQGLDQANRLQS-NKTKLDILPGR-ELGGSVIKLRNQHAKPWHINAASDNYGQKNSGRWLARANA   87 (404)
T ss_pred             ECCCCCCCCCCHHHHHHHHHHHHCCCC-CCCEEEECCCC-CCCCEEEEEEEECCCCEEEEEEECCCCCCCCCCEEEEEEE
T ss_conf             178988989737688889999706777-76159985799-9992089998601787799998769998143727878899


Q ss_pred             CCCCCCCCCCCCCEEEEEEE-----CCCCEEEEEEEECCCCCCCCCCCCCCCCCCCC--------CCCCCCCCCCCEEEE
Q ss_conf             11233323442200378741-----12211113454112357775431001111333--------333432333202455
Q gi|254780772|r  463 DDNNFFGQGYRARLAAGFGR-----HAVQNYTFSVEDPYFLGSPISAGFDLQKTHLE--------DGSLDINDESAAVRM  529 (781)
Q Consensus       463 ~~~Nl~G~G~~l~l~~~~~~-----~~~~~~~~s~~~P~~~~~~~s~~~~~~~~~~~--------~~~y~~~~~~~~~~~  529 (781)
T Consensus        88 ~~dnplgLnD~lsls~~~~~~~~~~~~~~~~s~~YSvP~--G-ywt~s~~~s~S~Y~~~~~~~~~~~~~~G~S~~~~l~~  164 (404)
T pfam03865        88 SLDSPFGLSDFVSLNANITLDNPAHRFNRAYTLLYSIPY--G-AFTFSGFASFSEYEFHQKLPHNTVKLHGDTQQVGIRG  164 (404)
T ss_pred             EECCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEEEEE--C-CEEEEEEEEEEEEEEEEECCCCCEEEECEEEEEEEEE
T ss_conf             964866754058983243367877776437899999100--0-1344237751237888704785178433165896377


Q ss_pred             EEECCCCE--EEEECCCEEEEEEECCCCCCCCCHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCC-
Q ss_conf             42025430--235404125776401467544201112210158502467884321554201100246515654202456-
Q gi|254780772|r  530 IVPITESI--STSFKYDLRFLQYGAISEKEKIPSIYTTLIEHGKFSSHSISQSIIYNTLDNPIVPRKGMLISSSYDYAG-  606 (781)
Q Consensus       530 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~dtrD~~~~Pt~G~~~~~~~~~a~-  606 (781)
T Consensus       165 srvl~R~~~~k~sl~~~l~~k~~~nyi~d--------~~l~vqsr~lt~~~lGl~~~~----~l~~g~l~~~l~~~~Gl~  232 (404)
T pfam03865       165 DYAFSRDHDQIDSLNGQLTHKRIDNYFEQ--------IRLDLSSPKLTLAELGANHLQ----IIPNGVFSANLSVEKAMG  232 (404)
T ss_pred             EEEEECCCCCEEEEEEEEEEEECCCEECC--------EEEEECCCCEEEEEEEEEEEE----EECCCEEEEEEEHHHCCC
T ss_conf             88788688843899999999650311777--------797602783678999620279----924858976772632667


Q ss_pred             -C------------CCCCEEEEEEEEEEEEEEECC-CEEEEEEEEEEEEEEECCCCCCCCHHEEEECCCCCCCCCCCCCC
Q ss_conf             -5------------554203666630047999358-80999999997898516997412301275078971402126861
Q gi|254780772|r  607 -F------------GGDSQYHRIGSRASYFYLLSD-DSDIVGSLRFGYGCVIPSNKNLQLFDQFSVSSNYYLRGFAYKGI  672 (781)
Q Consensus       607 -~------------g~d~~f~k~~~~~~~y~~l~~-~~~l~~~~~~g~~~~~~~~~~lp~~erF~lGG~~svRGy~~~~i  672 (781)
T Consensus       233 wfgA~~~~~~~~~~~~~~~f~k~~l~~~~~~~f~l~~~~~~~~--~~~~gQy-S~d~L~~sE~~sIGg~~sVRGF~e~sl  309 (404)
T pfam03865       233 WFGAEEHPSIAHGNGLDSQFTKGKLFANLSQRFRLGDATFLFN--NLFLGQY-SHDPLPGVEWLSLTDKNAIRGFDQSTL  309 (404)
T ss_pred             CCCCCCCCHHHCCCCCCCEEEEEEEEEEEEECCEECCCCEEEE--EEEEEEE-CCCCCCCHHEECCCCCCEECCCCCCCE
T ss_conf             6578778212037776524799999998860505556448989--9899650-899888044671448854776488807


Q ss_pred             CCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCC
Q ss_conf             55037997222147899999999614565654537999999767741566667754445676642479999999755700
Q gi|254780772|r  673 GPRVDKKYAIGGKIYSSASAAVSFPMPLVPERAGLRGAFFVDSATLYANHVALGADKLEGNDSFWRVSTGVEIMWNSPLG  752 (781)
Q Consensus       673 GP~~~~~~~~GG~~~~~~s~E~r~pl~~~~~~~~l~~~~F~D~G~v~~~~~~~~~~~~~~~~~~~r~s~G~Glr~~tP~G  752 (781)
T Consensus       310 s----------GD~G~y~rNels~~~~~~--~~~l~Pyig~D~G~v~~~~~~~~~------~~~~g~~~g~~l~~~~~~~  371 (404)
T pfam03865       310 S----------GDNGGYLQNTLSRPFNLG--AFSITPRIGADIGQIKPHGDNKGW------QGGAGISSGANIQYQQALL  371 (404)
T ss_pred             E----------ECCEEEEEEEEECCCCCC--CEEEEEEEEEEEEEEEECCCCCCC------CCCCEEEEEEEEEEEEEEE
T ss_conf             6----------455699999995324689--705889999775899716887555------4334055688999961089


Q ss_pred             CEEEEEEEECCCC
Q ss_conf             1589988722677
Q gi|254780772|r  753 MMGVYYGIPLRHR  765 (781)
Q Consensus       753 pirld~a~pl~~~  765 (781)
T Consensus       372 ~~~~~~g~~l~~~  384 (404)
T pfam03865       372 DLEVAKGEILYHQ  384 (404)
T ss_pred             EEEEECCCHHCCC
T ss_conf             8997716200173