HHsearch alignment for GI: 254780772 and conserved domain: pfam03865
>pfam03865 ShlB Haemolysin secretion/activation protein ShlB/FhaC/HecB. This family represents a group of sequences that are related to ShlB from Serratia marcescens. ShlB is an outer membrane protein pore involved in the Type Vb or Two-partner secretion system where it is functions to secrete and activate the haemolysin ShlA. The activation of ShlA occurs during secretion when ShlB imposes a conformational change in the inactive haemolysin to form the active protein.
Probab=99.94 E-value=8.2e-23 Score=166.57 Aligned_cols=342 Identities=15% Similarity=0.104 Sum_probs=207.2
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCEEEECC
Q ss_conf 001000000012344456667765101234453325443565431023322112211111111---12233211000001
Q gi|254780772|r 386 ELELSEGDPINYSMIERAKRRIMATGYFSEVNISQLPANDVSDYVILRVSVKQLSAGSVGIAT---NYEVDKGMGVEGHI 462 (781)
Q Consensus 386 el~~~~Gd~~~~~~i~~s~~~L~~lg~F~~V~i~~~~~~~~~~~vdl~i~v~E~~tg~~~~g~---gys~~~g~~~~~~~ 462 (781)
T Consensus 10 ~FP~~~G~~LNlrdlEQgleqlnRl~s-~~a~i~I~Pg~-~~G~S~i~i~~~~~~~~~~s~~~DN~G~~~TGr~q~~~~l 87 (404)
T pfam03865 10 LFPGIEGKPLKLAELDQGLDQANRLQS-NKTKLDILPGR-ELGGSVIKLRNQHAKPWHINAASDNYGQKNSGRWLARANA 87 (404)
T ss_pred ECCCCCCCCCCHHHHHHHHHHHHCCCC-CCCEEEECCCC-CCCCEEEEEEEECCCCEEEEEEECCCCCCCCCCEEEEEEE
T ss_conf 178988989737688889999706777-76159985799-9992089998601787799998769998143727878899
Q ss_pred CCCCCCCCCCCCCEEEEEEE-----CCCCEEEEEEEECCCCCCCCCCCCCCCCCCCC--------CCCCCCCCCCCEEEE
Q ss_conf 11233323442200378741-----12211113454112357775431001111333--------333432333202455
Q gi|254780772|r 463 DDNNFFGQGYRARLAAGFGR-----HAVQNYTFSVEDPYFLGSPISAGFDLQKTHLE--------DGSLDINDESAAVRM 529 (781)
Q Consensus 463 ~~~Nl~G~G~~l~l~~~~~~-----~~~~~~~~s~~~P~~~~~~~s~~~~~~~~~~~--------~~~y~~~~~~~~~~~ 529 (781)
T Consensus 88 ~~dnplgLnD~lsls~~~~~~~~~~~~~~~~s~~YSvP~--G-ywt~s~~~s~S~Y~~~~~~~~~~~~~~G~S~~~~l~~ 164 (404)
T pfam03865 88 SLDSPFGLSDFVSLNANITLDNPAHRFNRAYTLLYSIPY--G-AFTFSGFASFSEYEFHQKLPHNTVKLHGDTQQVGIRG 164 (404)
T ss_pred EECCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEEEEE--C-CEEEEEEEEEEEEEEEEECCCCCEEEECEEEEEEEEE
T ss_conf 964866754058983243367877776437899999100--0-1344237751237888704785178433165896377
Q ss_pred EEECCCCE--EEEECCCEEEEEEECCCCCCCCCHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCC-
Q ss_conf 42025430--235404125776401467544201112210158502467884321554201100246515654202456-
Q gi|254780772|r 530 IVPITESI--STSFKYDLRFLQYGAISEKEKIPSIYTTLIEHGKFSSHSISQSIIYNTLDNPIVPRKGMLISSSYDYAG- 606 (781)
Q Consensus 530 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~dtrD~~~~Pt~G~~~~~~~~~a~- 606 (781)
T Consensus 165 srvl~R~~~~k~sl~~~l~~k~~~nyi~d--------~~l~vqsr~lt~~~lGl~~~~----~l~~g~l~~~l~~~~Gl~ 232 (404)
T pfam03865 165 DYAFSRDHDQIDSLNGQLTHKRIDNYFEQ--------IRLDLSSPKLTLAELGANHLQ----IIPNGVFSANLSVEKAMG 232 (404)
T ss_pred EEEEECCCCCEEEEEEEEEEEECCCEECC--------EEEEECCCCEEEEEEEEEEEE----EECCCEEEEEEEHHHCCC
T ss_conf 88788688843899999999650311777--------797602783678999620279----924858976772632667
Q ss_pred -C------------CCCCEEEEEEEEEEEEEEECC-CEEEEEEEEEEEEEEECCCCCCCCHHEEEECCCCCCCCCCCCCC
Q ss_conf -5------------554203666630047999358-80999999997898516997412301275078971402126861
Q gi|254780772|r 607 -F------------GGDSQYHRIGSRASYFYLLSD-DSDIVGSLRFGYGCVIPSNKNLQLFDQFSVSSNYYLRGFAYKGI 672 (781)
Q Consensus 607 -~------------g~d~~f~k~~~~~~~y~~l~~-~~~l~~~~~~g~~~~~~~~~~lp~~erF~lGG~~svRGy~~~~i 672 (781)
T Consensus 233 wfgA~~~~~~~~~~~~~~~f~k~~l~~~~~~~f~l~~~~~~~~--~~~~gQy-S~d~L~~sE~~sIGg~~sVRGF~e~sl 309 (404)
T pfam03865 233 WFGAEEHPSIAHGNGLDSQFTKGKLFANLSQRFRLGDATFLFN--NLFLGQY-SHDPLPGVEWLSLTDKNAIRGFDQSTL 309 (404)
T ss_pred CCCCCCCCHHHCCCCCCCEEEEEEEEEEEEECCEECCCCEEEE--EEEEEEE-CCCCCCCHHEECCCCCCEECCCCCCCE
T ss_conf 6578778212037776524799999998860505556448989--9899650-899888044671448854776488807
Q ss_pred CCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCC
Q ss_conf 55037997222147899999999614565654537999999767741566667754445676642479999999755700
Q gi|254780772|r 673 GPRVDKKYAIGGKIYSSASAAVSFPMPLVPERAGLRGAFFVDSATLYANHVALGADKLEGNDSFWRVSTGVEIMWNSPLG 752 (781)
Q Consensus 673 GP~~~~~~~~GG~~~~~~s~E~r~pl~~~~~~~~l~~~~F~D~G~v~~~~~~~~~~~~~~~~~~~r~s~G~Glr~~tP~G 752 (781)
T Consensus 310 s----------GD~G~y~rNels~~~~~~--~~~l~Pyig~D~G~v~~~~~~~~~------~~~~g~~~g~~l~~~~~~~ 371 (404)
T pfam03865 310 S----------GDNGGYLQNTLSRPFNLG--AFSITPRIGADIGQIKPHGDNKGW------QGGAGISSGANIQYQQALL 371 (404)
T ss_pred E----------ECCEEEEEEEEECCCCCC--CEEEEEEEEEEEEEEEECCCCCCC------CCCCEEEEEEEEEEEEEEE
T ss_conf 6----------455699999995324689--705889999775899716887555------4334055688999961089
Q ss_pred CEEEEEEEECCCC
Q ss_conf 1589988722677
Q gi|254780772|r 753 MMGVYYGIPLRHR 765 (781)
Q Consensus 753 pirld~a~pl~~~ 765 (781)
T Consensus 372 ~~~~~~g~~l~~~ 384 (404)
T pfam03865 372 DLEVAKGEILYHQ 384 (404)
T ss_pred EEEEECCCHHCCC
T ss_conf 8997716200173