HHsearch alignment for GI: 254780772 and conserved domain: pfam08479
>pfam08479 POTRA_2 POTRA domain, ShlB-type. The POTRA domain (for polypeptide-transport-associated domain) is found towards the N-terminus of ShlB family proteins (pfam03865). ShlB is important in the secretion and activation of the haemolysin ShlA. It has been postulated that the POTRA domain has a chaperone-like function over ShlA; it may fold back into the C-terminal beta-barrel channel.
Probab=98.37 E-value=3.9e-06 Score=57.43 Aligned_cols=75 Identities=19% Similarity=0.279 Sum_probs=65.6
Q ss_pred EEEEEEEECCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEEEEEECC
Q ss_conf 36579995654369889988730057863799999999999999999729700179987643389842588986036
Q gi|254780772|r 115 IINHLFFSGNNNLKDDQLKMIVRSRSAAAYDEDTVNADVHNIKQAYASIGYLNVMVKVQHHSISPTTLNITYVIEEG 191 (781)
Q Consensus 115 ~i~~i~~~Gn~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~i~~~y~~~Gy~~a~V~~~~~~~~~~~v~i~~~I~EG 191 (781)
T Consensus 2 ~v~~i~~~G~~~~~~~~l~~~~~~~~g~~l~~~~L~~~~~~i~~~Y~~~GY~~srv~lP~Q~i~~G~--l~i~VvEG 76 (76)
T pfam08479 2 PIKGIELEGNTLLPPADLAALLQPYLGRCLGLADLNQLAKALTNAYIERGYVTSRVYLPPQDLSDGV--LRLTVLEG 76 (76)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCE--EEEEEECC
T ss_conf 0789999898257999999987875098369999999999999999988987999981785067988--99999688