HHsearch results for GI: 254780772 and protein with PDBid: 3mc9_A
>3mc9_A ALR2269 protein; polypeptide transport associated, potra, outer bacterial MEM protein membrane transport, beta barrel biogenesis, membran; 2.20A {Nostoc SP} PDB: 3mc8_A
Probab=100.00 E-value=2.8e-35 Score=246.74 Aligned_cols=234 Identities=21% Similarity=0.346 Sum_probs=187.4
Q ss_pred CEEEEEEEEECCCCCCHH----HHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEC----CEEEEEEEECCEE
Q ss_conf 526858999665007988----99997487898826889999999999967980038999869----9899999936536
Q gi|254780772|r 45 TSIVRRIEIRGATNVGKE----VILSRIPVVVGQSISDADLDHAVKNIYAMGYFSNVKIKIVD----SVLIIDLIERKII 116 (781)
Q Consensus 45 ~~~i~~I~i~G~~~i~~~----~i~~~~~~~~G~~~~~~~i~~~i~~l~~~g~F~~v~~~~~~----~~l~~~v~e~p~i 116 (781)
...|++|.|+|+...++. .|+..|.+|+|+.++++.|++|+++||+||||+||++..++ ..|+|.|.|+|+|
T Consensus 61 ~v~i~eV~i~G~~~~~~~eLe~~i~~~i~~r~G~~~s~~~l~~di~~L~~tG~F~~V~~~~~~~~~gv~l~~~v~e~p~i 140 (316)
T 3mc9_A 61 RVLVSEVLVRPQSGQLTPELETQVYNVIRTQPGRTTTRSQLQEDINAIFGTGFFSNVQASPEDTPLGVRVSFIVQPNPVL 140 (316)
T ss_dssp CEEEEEEEEEESSSCCCHHHHHHHHHHCCCCTTSEECHHHHHHHHHHHHHTSCEEEEEEEEEEETTEEEEEEEEEECCBC
T ss_pred CEEEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCEEEEEEEEECCEE
T ss_conf 15789999980678888899999998601689982799999999999997599115899987469855999999878789
Q ss_pred EEEEEECCCC------CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEEEEEEC
Q ss_conf 5799956543------6988998873005786379999999999999999972970017998764338984258898603
Q gi|254780772|r 117 NHLFFSGNNN------LKDDQLKMIVRSRSAAAYDEDTVNADVHNIKQAYASIGYLNVMVKVQHHSISPTTLNITYVIEE 190 (781)
Q Consensus 117 ~~i~~~Gn~~------~~~~~l~~~~~~~~g~~~~~~~~~~~~~~i~~~y~~~Gy~~a~V~~~~~~~~~~~v~i~~~I~E 190 (781)
..|.|+||.. ++.+.|.+.+.++.|++|+...+++++++|+++|.++||+.|+|.......+++.
T Consensus 141 ~~i~i~Gn~~~~~~~ll~~~~l~~~~~~~~G~~~n~~~l~~~~~~I~~~Y~~~GY~~a~V~~~~~~~~~g~--------- 211 (316)
T 3mc9_A 141 SKVEIQANPGTNVPSVLPQATADEIFRAQYGKILNLRDLQEGIKELTKRYQDQGYVLANVVGAPQVSENGV--------- 211 (316)
T ss_dssp CEEEEECCC----CCSSCTTHHHHHHGGGTTSBCCHHHHHHHHHHHHHHHHHTTCTTCEECSSCEECTTSE---------
T ss_pred EEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCC---------
T ss_conf 99999744334644448899999875004798158889999999999999764912689986324246655---------
Q ss_pred CCCEEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 66324677875044311012222111001221124456664310233334578888887542322100123101245555
Q gi|254780772|r 191 GVKAKINSIRFVGNKNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFDEEAIRAFYHDRGYAAVKVSSQVLFDKQKSG 270 (781)
Q Consensus 191 G~~~~I~~I~f~Gn~~f~~~~L~~~~~~k~~~~~~~~~~~~~~~~~l~~D~~~l~~~Y~~~GY~d~~V~~~~~~~~~~~~ 270 (781)
T Consensus 212 -------------------------------------------------------------------------------- 211 (316)
T 3mc9_A 212 -------------------------------------------------------------------------------- 211 (316)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEECCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 41012202222100000123334445576777753211699621121000000000000234456420112332234344
Q gi|254780772|r 271 YVLIFQIDEGEIYTVGNISIQSTLQEIQKKTLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPFVRVKTRINRDFAK 350 (781)
Q Consensus 271 ~~i~~~I~EG~~y~i~~i~i~g~~~~~~~~~l~~~~~~k~G~~~~~~~~~~~~~~i~~~y~~~GY~fa~v~~~~~~d~~~ 350 (781)
|++.|.||. +..+.
T Consensus 212 --v~l~V~eg~---~~~i~------------------------------------------------------------- 225 (316)
T 3mc9_A 212 --VTLQVAEGV---VENIS------------------------------------------------------------- 225 (316)
T ss_dssp --EEEEEECCE---EC----------------------------------------------------------------
T ss_pred --CEEEEEEEC---CCCCE-------------------------------------------------------------
T ss_conf --215898511---22102-------------------------------------------------------------
Q ss_pred CEEEEEEECCCCCCCEEECCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 04665541233322011003333432003321001001000000012344456667765101234453325443565431
Q gi|254780772|r 351 RIVDIEYLIDQGSPLYVKRIEIEGNDQSYDSVIRRELELSEGDPINYSMIERAKRRIMATGYFSEVNISQLPANDVSDYV 430 (781)
Q Consensus 351 ~~vdi~~~I~eg~~~~i~~I~I~GN~~T~d~VIrrel~~~~Gd~~~~~~i~~s~~~L~~lg~F~~V~i~~~~~~~~~~~v 430 (781)
+.+...+|.+.+...+.+.| +|+|+||+|+|.++||++||..++++++++|+++|||++|++.+.|.. .++.+
T Consensus 226 ----v~~~~~eg~~~~~~~~~~~g--~T~~~vI~Rel~~~~G~~fn~~~l~~d~~rL~~lg~F~~V~v~~~p~~-d~~~v 298 (316)
T 3mc9_A 226 ----VRFRNKEGQDVNEQGQPIRG--RTQDYIITREVELKPGQVFNRNTVQKDLQRVFGTGLFEDVNVSLDPGT-DPTKV 298 (316)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----EEEEECCCCEEEEECCCCCC--CCCCHHEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECC-CCCEE
T ss_conf ----47872365157750321112--331331444343389987799999999999985699616689987658-99938
Q ss_pred CCCCCCCCCC
Q ss_conf 0233221122
Q gi|254780772|r 431 ILRVSVKQLS 440 (781)
Q Consensus 431 dl~i~v~E~~ 440 (781)
+|.++|+|+.
T Consensus 299 ~v~i~V~E~s 308 (316)
T 3mc9_A 299 NVVVNVVERS 308 (316)
T ss_dssp ----------
T ss_pred EEEEEEEECC
T ss_conf 9999999536