Query         gi|254780772|ref|YP_003065185.1| surface antigen (D15) [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 781
No_of_seqs    308 out of 3546
Neff          8.7 
Searched_HMMs 23785
Date          Mon May 30 13:51:33 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780772.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3efc_A OMP85, outer membrane p 100.0       0       0  586.2  25.0  387   41-428     2-393 (395)
  2 2qdf_A OMP85, outer membrane p 100.0       0       0  470.5  27.1  329   40-369     2-335 (335)
  3 2qdz_A TPSB transporter FHAC;  100.0       0       0  412.7  26.6  476  267-781    43-554 (554)
  4 2qdf_A OMP85, outer membrane p 100.0 9.4E-39   4E-43  269.5  18.6  312  111-443     5-332 (335)
  5 3efc_A OMP85, outer membrane p 100.0   9E-36 3.8E-40  250.0  18.6  312  110-441     3-329 (395)
  6 3mc9_A ALR2269 protein; polype 100.0 2.8E-35 1.2E-39  246.7  17.1  234   45-440    61-308 (316)
  7 2x8x_X TLR1789 protein, OMP85; 100.0 8.6E-35 3.6E-39  243.6   9.2  232  190-441     1-235 (235)
  8 2x8x_X TLR1789 protein, OMP85; 100.0 8.8E-29 3.7E-33  204.3  22.4  223   45-281     4-234 (235)
  9 3og5_A Outer membrane protein  100.0   2E-31 8.6E-36  221.5   4.9  163  279-442     2-164 (166)
 10 3og5_A Outer membrane protein   99.9 1.4E-21 6.1E-26  157.0  14.8  158  111-281     3-162 (166)
 11 3mc9_A ALR2269 protein; polype  99.7 2.6E-15 1.1E-19  116.1  14.4  152  192-363    60-220 (316)
 12 2qdz_A TPSB transporter FHAC;   99.5 1.1E-13 4.5E-18  105.5  10.0  167  180-368    45-214 (554)
 13 2vh2_A FTSQ, cell division pro  96.4  0.0094   4E-07   33.9   6.9   71   47-117    27-100 (255)
 14 2vh1_A FTSQ, cell division pro  96.1   0.046 1.9E-06   29.4   9.1   71   48-118     1-75  (220)
 15 3a7r_A Lipoate-protein ligase   56.8     4.8  0.0002   16.1   2.1   56  348-407   259-314 (337)
 16 2e5a_A Lipoyltransferase 1; li  41.2      11 0.00046   13.8   2.5   25  348-375   265-289 (347)
 17 1dbg_A Chondroitinase B; beta   37.3      11 0.00046   13.8   1.4   17   60-76     30-47  (506)
 18 1vqz_A Lipoate-protein ligase,  34.2      13 0.00056   13.2   1.5   61  348-413   266-327 (341)
 19 1p4t_A Outer membrane protein   31.3      16 0.00065   12.8   9.8   26  735-760   104-130 (155)
 20 2k4v_A Uncharacterized protein  30.6       9 0.00038   14.4   0.1   20  383-402   102-121 (125)
 21 1orm_A Outer membrane protein   30.5     3.6 0.00015   16.9  -1.9   18  526-543   110-127 (148)
 22 3htm_A Speckle-type POZ protei  29.5      17  0.0007   12.6   1.5   25   79-103    19-43  (172)
 23 3h0d_A CTSR; protein DNA compl  24.0      21 0.00087   12.0   4.6   10  245-254    47-56  (155)
 24 2sak_A Staphylokinase; plasmin  21.0      22 0.00094   11.8   0.7   44  373-418    20-66  (121)
 25 1c76_A Staphylokinase, SAK; be  20.6      24   0.001   11.6   0.7   44  373-418    35-81  (136)
 26 2rdq_A 1-deoxypentalenic acid   20.5      24   0.001   11.5   2.1   28  229-256     9-36  (288)
 27 1txl_A Metal-binding protein Y  20.0      25   0.001   11.5   2.2   11  242-253    90-100 (215)

No 1  
>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane; 3.30A {Escherichia coli}
Probab=100.00  E-value=0  Score=586.17  Aligned_cols=387  Identities=26%  Similarity=0.461  Sum_probs=367.0

Q ss_pred             HCCCCEEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEEEECCEEEEEE
Q ss_conf             11465268589996650079889999748789882688999999999996798003899986998999999365365799
Q gi|254780772|r   41 YGSNTSIVRRIEIRGATNVGKEVILSRIPVVVGQSISDADLDHAVKNIYAMGYFSNVKIKIVDSVLIIDLIERKIINHLF  120 (781)
Q Consensus        41 ~~~~~~~i~~I~i~G~~~i~~~~i~~~~~~~~G~~~~~~~i~~~i~~l~~~g~F~~v~~~~~~~~l~~~v~e~p~i~~i~  120 (781)
                      +.|++++|++|+|+||+++++++|++++++++|++++++.+++++++||+||+|+||++..++..|+|.|+|+|+|.+|.
T Consensus         2 a~a~~~~I~~I~i~G~~~i~~~~i~~~~~~~~G~~~~~~~i~~~ik~L~~tg~F~~V~i~~~g~~l~i~V~E~p~i~~i~   81 (395)
T 3efc_A            2 AMAEGFVVKDIHFEGLQRVAVGAALLSMPVRTGDTVNDEDISNTIRALFATGNFEDVRVLRDGDTLLVQVKERPTIASIT   81 (395)
T ss_dssp             ----CCCEEEEECSCCSSSCHHHHHHTCSCCTTSCCCTHHHHHHHHHHHHHCCEEEEEEECCSSEEEEEEEECCEEEEEE
T ss_pred             CCCCCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCEEEEEEEECCEEEEEE
T ss_conf             87777189789999984179999997468999993798999999999996798026999962999999999446160379


Q ss_pred             EECCCCCCHHHHHHH---HHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEEEEEECCCCEEEE
Q ss_conf             956543698899887---30057863799999999999999999729700179987643389842588986036632467
Q gi|254780772|r  121 FSGNNNLKDDQLKMI---VRSRSAAAYDEDTVNADVHNIKQAYASIGYLNVMVKVQHHSISPTTLNITYVIEEGVKAKIN  197 (781)
Q Consensus       121 ~~Gn~~~~~~~l~~~---~~~~~g~~~~~~~~~~~~~~i~~~y~~~Gy~~a~V~~~~~~~~~~~v~i~~~I~EG~~~~I~  197 (781)
                      |+||+.++++.|++.   ++++.|+++++..+++++++|+++|.++||++|.|.++.++.++++++|+|.|+||++++|.
T Consensus        82 ~~Gn~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~~Gy~~~~v~~~~~~~~~~~v~v~~~I~Eg~~~kI~  161 (395)
T 3efc_A           82 FSGNKSVKDDMLKQNLEASGVRVGESLDRTTIADIEKGLEDFYYSVGKYSASVKAVVTPLPRNRVDLKLVFQEGVSAEIQ  161 (395)
T ss_dssp             EESCTTSCHHHHHHHHHHHTCCSSSCCCGGGHHHHHHHHHHHHHTTTCCSCEEEEECCBCTTSEEEEEEEEECCCCCCCC
T ss_pred             EECCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCCCE
T ss_conf             99762134445433210134344441235668999999999998708632210237752467505544432005542213


Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCEEE
Q ss_conf             78750443110122221110012211244-56664310233334578888887542322100123-10124555541012
Q gi|254780772|r  198 SIRFVGNKNYSHARLERVISIRTSGYFSF-GKTDVYSKERMSFDEEAIRAFYHDRGYAAVKVSSQ-VLFDKQKSGYVLIF  275 (781)
Q Consensus       198 ~I~f~Gn~~f~~~~L~~~~~~k~~~~~~~-~~~~~~~~~~l~~D~~~l~~~Y~~~GY~d~~V~~~-~~~~~~~~~~~i~~  275 (781)
                      +|.|+||+.|++++|++.|.+++.+||++ ..++.|+++.++.|+++|++||+++||+|++|..+ +...+++..+.|+|
T Consensus       162 ~I~f~Gn~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~l~~~Y~~~Gy~d~~v~~~~~~~~~~~~~v~i~i  241 (395)
T 3efc_A          162 QINIVGNHAFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYVTV  241 (395)
T ss_dssp             CCEEESCCSSCTTTTGGGCCCCSSCCSCCSCTTTHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCCEECTTSCSEECEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCHHCCCHHHHHHHHHHCCEEEEEECCCEEEECCCCCCCEEEE
T ss_conf             78983353331155554443011100111013433222000031888888985567589997021689815777515753


Q ss_pred             EECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEECCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             20222210000012333444557677775321169962112100000000000023445642011233223434404665
Q gi|254780772|r  276 QIDEGEIYTVGNISIQSTLQEIQKKTLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPFVRVKTRINRDFAKRIVDI  355 (781)
Q Consensus       276 ~I~EG~~y~i~~i~i~g~~~~~~~~~l~~~~~~k~G~~~~~~~~~~~~~~i~~~y~~~GY~fa~v~~~~~~d~~~~~vdi  355 (781)
                      .|+||+||++++|+|.|+. ..+.+++.+.+.+++|++|+...++++.++|.+.|.++||++++|.+.+..+.++++|+|
T Consensus       242 ~i~EG~~y~v~~i~i~Gn~-~~~~~~l~~~l~~~~g~~f~~~~~~~~~~~i~~~y~~~GY~~a~v~~~~~~~~~~~~v~l  320 (395)
T 3efc_A          242 NITEGDQYKLSGVEVSGNL-AGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPEINDADKTVKL  320 (395)
T ss_dssp             EEECCCCCEEEEECCBSCC-TTCHHHHHHTCCCCSSCBCCHHHHHHHHHHHHHHHHHTTCSSCEEEEEEEEETTTTEEEE
T ss_pred             ECCCCEEEEEEEEEEECCC-HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCEEEE
T ss_conf             0244404788776650572-000134555543204632340121002457899997517532124663045056738999


Q ss_pred             EEECCCCCCCEEECCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             5412333220110033334320033210010010000000123444566677651012344533254435654
Q gi|254780772|r  356 EYLIDQGSPLYVKRIEIEGNDQSYDSVIRRELELSEGDPINYSMIERAKRRIMATGYFSEVNISQLPANDVSD  428 (781)
Q Consensus       356 ~~~I~eg~~~~i~~I~I~GN~~T~d~VIrrel~~~~Gd~~~~~~i~~s~~~L~~lg~F~~V~i~~~~~~~~~~  428 (781)
                      .|.|+||+++||++|+|.||++|+|+||||+|.++|||+||+.++++|++||++||||++|++.+.|+++.+|
T Consensus       321 ~~~I~eg~~~~v~~I~I~GN~~T~d~vIrrel~~~~Gd~~~~~~l~~s~~~L~~lg~F~~V~i~~~~v~~~~D  393 (395)
T 3efc_A          321 RVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVDQGKERLNRLGFFETVDTDTQRVPGSPD  393 (395)
T ss_dssp             EEEEECCCCCCC-------------------------------------------------------------
T ss_pred             EEEECCCCCEEEEEEEEECCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC
T ss_conf             9998448818999999988873655641320036998647999999999999846997600546403888989


No 2  
>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A
Probab=100.00  E-value=0  Score=470.52  Aligned_cols=329  Identities=25%  Similarity=0.447  Sum_probs=310.9

Q ss_pred             HHCCCCEEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEEEECCEEEEE
Q ss_conf             51146526858999665007988999974878988268899999999999679800389998699899999936536579
Q gi|254780772|r   40 VYGSNTSIVRRIEIRGATNVGKEVILSRIPVVVGQSISDADLDHAVKNIYAMGYFSNVKIKIVDSVLIIDLIERKIINHL  119 (781)
Q Consensus        40 ~~~~~~~~i~~I~i~G~~~i~~~~i~~~~~~~~G~~~~~~~i~~~i~~l~~~g~F~~v~~~~~~~~l~~~v~e~p~i~~i  119 (781)
                      .++|++++|++|+|+||+++++++|++.+++++|++++++.+++++++||+||+|+||++..++..|+++|+|+|.|.+|
T Consensus         2 ~~~a~~~~I~~I~i~G~~~v~~~~i~~~~~~~~G~~~~~~~i~~~ik~L~~tg~F~dV~v~~~g~~l~i~v~e~p~i~~i   81 (335)
T 2qdf_A            2 SHMAEGFVVKDIHFEGLQRVAVGAALLSMPVRTGDTVNDEDISNTIRALFATGNFEDVRVLRDGDTLLVQVKERPTIASI   81 (335)
T ss_dssp             --CCCCEECCEEEEESCSSSCHHHHHHTSSCCTTCEECHHHHHHHHHHHHTTSCEEEEEEEEETTEEEEEEEECCEEEEE
T ss_pred             CCCCCCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEEEECCCCCCC
T ss_conf             76567748979999998327999999746899999279999999999999769942489997288899988864531111


Q ss_pred             EEECCCCCCHHHHHHHH---HHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEEEEEECCCCEEE
Q ss_conf             99565436988998873---005786379999999999999999972970017998764338984258898603663246
Q gi|254780772|r  120 FFSGNNNLKDDQLKMIV---RSRSAAAYDEDTVNADVHNIKQAYASIGYLNVMVKVQHHSISPTTLNITYVIEEGVKAKI  196 (781)
Q Consensus       120 ~~~Gn~~~~~~~l~~~~---~~~~g~~~~~~~~~~~~~~i~~~y~~~Gy~~a~V~~~~~~~~~~~v~i~~~I~EG~~~~I  196 (781)
                      .|+||+.++++.|++.+   +++.|.+|++..+++++++|+++|+++||++|.|+++.++.+.+++.|+|.|+||++++|
T Consensus        82 ~~~Gn~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~Y~~~Gy~~a~V~~~~~~~~~~~~~v~~~I~EG~~~~I  161 (335)
T 2qdf_A           82 TFSGNKSVKDDMLKQNLEASGVRVGESLDRTTIADIEKGLEDFYYSVGKYSASVKAVVTPLPRNRVDLKLVFQEGVSAEI  161 (335)
T ss_dssp             EEESCCSSCHHHHHHHHHTTTCCTTSBCCTTSHHHHHHHHHHHGGGGTBSSCEEEEEEEEETTTEEEEEEEEECCCBCEE
T ss_pred             EEECCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEEEEEEECCCCCCCEEEEEECCCCEEE
T ss_conf             26644423335554544320223456554345688999999999863725678877777657776313688512654179


Q ss_pred             EEEEEECCCCCCHHHHHHHHHCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCEE
Q ss_conf             77875044311012222111001221124-456664310233334578888887542322100123-1012455554101
Q gi|254780772|r  197 NSIRFVGNKNYSHARLERVISIRTSGYFS-FGKTDVYSKERMSFDEEAIRAFYHDRGYAAVKVSSQ-VLFDKQKSGYVLI  274 (781)
Q Consensus       197 ~~I~f~Gn~~f~~~~L~~~~~~k~~~~~~-~~~~~~~~~~~l~~D~~~l~~~Y~~~GY~d~~V~~~-~~~~~~~~~~~i~  274 (781)
                      ++|.|+||+.|++++|++.|.+++..||+ +..++.|+++.++.|+++|++||+++||+|++|... +...+++..+.|+
T Consensus       162 ~~I~f~Gn~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~l~~~y~~~Gy~d~~v~~~~~~~~~d~~~~~i~  241 (335)
T 2qdf_A          162 QQINIVGNHAFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYVT  241 (335)
T ss_dssp             EEEEEESCCSSCHHHHHGGGSCC--------------CCSCHHHHHHHHHHHHHTTTCTTCEEEEEEEEECTTSSEEEEE
T ss_pred             EEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCEEEE
T ss_conf             99763166543045655433310122122223454200567777787766777430101110133168885066440588


Q ss_pred             EEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEECCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             22022221000001233344455767777532116996211210000000000002344564201123322343440466
Q gi|254780772|r  275 FQIDEGEIYTVGNISIQSTLQEIQKKTLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPFVRVKTRINRDFAKRIVD  354 (781)
Q Consensus       275 ~~I~EG~~y~i~~i~i~g~~~~~~~~~l~~~~~~k~G~~~~~~~~~~~~~~i~~~y~~~GY~fa~v~~~~~~d~~~~~vd  354 (781)
                      +.|+||+||++++|.|.||. .++.++|++.+++++|++||...++++.++|.+.|.++||+|++|.|.++.+.++++|+
T Consensus       242 ~~i~EG~~y~v~~i~i~Gn~-~~~~~~l~~~~~~k~G~~y~~~~i~~~~~~i~~~y~~~GY~~~~V~~~~~~~~~~~~vd  320 (335)
T 2qdf_A          242 VNITEGDQYKLSGVEVSGNL-AGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPEINDADKTVK  320 (335)
T ss_dssp             EEEECCCCCEEEEEEEEEEC-TTCHHHHHHHTCCCTTEECCHHHHHHHHHHHHHHHHTTTBSSCEEEEEEEEETTTTEEE
T ss_pred             EEECCCCEEEEEEEEEECCC-CCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEE
T ss_conf             73136845998511897244-33146799874578999509999999999999999867984148997778848899898


Q ss_pred             EEEECCCCCCCEEEC
Q ss_conf             554123332201100
Q gi|254780772|r  355 IEYLIDQGSPLYVKR  369 (781)
Q Consensus       355 i~~~I~eg~~~~i~~  369 (781)
                      |+|.|+||+|+||++
T Consensus       321 v~~~I~eg~~~~V~r  335 (335)
T 2qdf_A          321 LRVNVDAGNRFYVRK  335 (335)
T ss_dssp             EEEEEECCCBCCCCC
T ss_pred             EEEEEEECCCEEECC
T ss_conf             999997289558549


No 3  
>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis}
Probab=100.00  E-value=0  Score=412.68  Aligned_cols=476  Identities=13%  Similarity=0.124  Sum_probs=334.1

Q ss_pred             CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEECCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             55554101220222210000012333444557677775321169962112100000000000023445642011233223
Q gi|254780772|r  267 QKSGYVLIFQIDEGEIYTVGNISIQSTLQEIQKKTLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPFVRVKTRINR  346 (781)
Q Consensus       267 ~~~~~~i~~~I~EG~~y~i~~i~i~g~~~~~~~~~l~~~~~~k~G~~~~~~~~~~~~~~i~~~y~~~GY~fa~v~~~~~~  346 (781)
                      +.....+...+.||+++.|+.|.|+|+. ..+.++|.+++....|++++...+++.+++|++.|.++||++++|.. +.+
T Consensus        43 ~~~~~~~~~~~~~g~~~~v~~i~~~g~~-~~~~~~l~~~~~~~~G~~~~~~~l~~~~~~i~~~y~~~GY~~a~v~~-~~q  120 (554)
T 2qdz_A           43 EAAAPARKPDATSGHTVTVHAVDLDFGV-EGRLFDPAPLVQDYLNRPLDNEQLFLLVKALSAALYDRGYATSIVTF-VPP  120 (554)
T ss_dssp             ----------CBCCCSSSSCCEEEECCS-SSCCCSCSTTSTTSSSSCBCSTTHHHHHHHHHHHHHHTTCTTCEEEE-EEE
T ss_pred             CCCCCCCCCCCCCCCEEEEEEEEEECCC-CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEE-CCC
T ss_conf             6677754466888863899999984886-58989999877862598469999999999999999978984689871-243


Q ss_pred             CCCCCEEEEEEECCCCCCCEEECCCCCCCCCCCCC---CCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             43440466554123332201100333343200332---100100100000001234445666776510123445332544
Q gi|254780772|r  347 DFAKRIVDIEYLIDQGSPLYVKRIEIEGNDQSYDS---VIRRELELSEGDPINYSMIERAKRRIMATGYFSEVNISQLPA  423 (781)
Q Consensus       347 d~~~~~vdi~~~I~eg~~~~i~~I~I~GN~~T~d~---VIrrel~~~~Gd~~~~~~i~~s~~~L~~lg~F~~V~i~~~~~  423 (781)
                      +.++++  |++.|.||   +|++|.|.||..+.+.   .+++.+++++|++|+..++++++++|.++++|..|.+.+.  
T Consensus       121 ~~~~g~--l~i~v~eG---~i~~i~i~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~le~~~~~l~~~g~~~~v~l~p~--  193 (554)
T 2qdz_A          121 GVVDGV--LKLKVEWG---RIKGWLIDGKPLEGTRDRMMVFSAMPGWQDKVLNVFDIDQAIYNINNGGKTGNITIVPA--  193 (554)
T ss_dssp             EEETTE--EEEEEECC---EEEEEEETTEECCSHHHHHHHHHHSTTCTTCBCCHHHHHHHHHHHCSSSEEEEEEEEEC--
T ss_pred             CCCCCE--EEEEEEEC---EEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEC--
T ss_conf             476867--99999985---15568983255567136666776476777884678899999998750586225898607--


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEC------CCCEEEEEE
Q ss_conf             3565431023322112211111111-----12233211000001112333234422003787411------221111345
Q gi|254780772|r  424 NDVSDYVILRVSVKQLSAGSVGIAT-----NYEVDKGMGVEGHIDDNNFFGQGYRARLAAGFGRH------AVQNYTFSV  492 (781)
Q Consensus       424 ~~~~~~vdl~i~v~E~~tg~~~~g~-----gys~~~g~~~~~~~~~~Nl~G~G~~l~l~~~~~~~------~~~~~~~s~  492 (781)
                       ..++.+++.+.|+|+++..+++++     |+.+..+..+.+++.++|++|.|+++++++..+..      ..+.++++|
T Consensus       194 -~~~g~~~~~v~v~~~~~~~~~~~~~~~~~G~~~~g~~~~~~~~~~~Nl~G~gd~l~~~~~~s~~~~~~~~~~~~~~~~y  272 (554)
T 2qdz_A          194 -DEYGYSYLDLQLQRRALPRVSLGMDNSGPGTPENGRYKYNASVTANDLLGLNDTLGLYIGNRYYRDAGHDAERNYDLMY  272 (554)
T ss_dssp             -SSTTEEEEEEEEEECCSCEEEEEEEECSCSSSCSSCEEEEEEEEEECSSSSSCEEEEEEEEECCSCCSSCEEEEEEEEE
T ss_pred             -CCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEE
T ss_conf             -8898522678988735553210212457875544358999999965777879779999874233355655413467764


Q ss_pred             EECCCCCCCCCCCCCC--CCCCC----CCCCCCCCCCCCEEEEEEECCCCEE--EEECCCEEEEEEECCCCCCCCCHHHH
Q ss_conf             4112357775431001--11133----3333432333202455420254302--35404125776401467544201112
Q gi|254780772|r  493 EDPYFLGSPISAGFDL--QKTHL----EDGSLDINDESAAVRMIVPITESIS--TSFKYDLRFLQYGAISEKEKIPSIYT  564 (781)
Q Consensus       493 ~~P~~~~~~~s~~~~~--~~~~~----~~~~y~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  564 (781)
                      ..|+... .+++..+.  +....    ....+...+...++++.+++.+...  ..+.+.+.+.+..........     
T Consensus       273 ~~P~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~-----  346 (554)
T 2qdz_A          273 SVPLGRT-RLDLQTGYSTYRNLLKTRYGQYQSAGNSRSFGLKATRLLYRDTRSQFSVYGGLKLRQNKNYLAGTRL-----  346 (554)
T ss_dssp             EEEETTE-EEEEEEEEEEEECCCSSSSCCCCCEEEEEEEEEEEEEEEECCSSEEEEEEEEEEEEEEEEECCTTSC-----
T ss_pred             ECCCCCC-CCEEEEEEEEEEEECCCCCCCEEECCCCEEECCEEEEEEEEECCCEEEEEEEEEEEECCEEECCCCC-----
T ss_conf             0234544-4135542223322115664201203421020542565467501113667889998642213056113-----


Q ss_pred             HHHCCCCCEEEEEEEEECCCC------CCCCCCCCCCEEEEEEECC--CCCCCCCEEEEEEEEEEEEEEECC-CEEEEEE
Q ss_conf             210158502467884321554------2011002465156542024--565554203666630047999358-8099999
Q gi|254780772|r  565 TLIEHGKFSSHSISQSIIYNT------LDNPIVPRKGMLISSSYDY--AGFGGDSQYHRIGSRASYFYLLSD-DSDIVGS  635 (781)
Q Consensus       565 ~~~~~~~~~~~~i~~~l~~dt------rD~~~~Pt~G~~~~~~~~~--a~~g~d~~f~k~~~~~~~y~~l~~-~~~l~~~  635 (781)
                         .........+..+++++.      .+..+.++.|.........  ...+++.+|.|+.+++.++.++.. ...+.+.
T Consensus       347 ---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~  423 (554)
T 2qdz_A          347 ---DVSSKHYSDVTVGMQYSTQRGANAYFGDLSFTRGVGVNNGKYAAYDERGPQGNVSRFNGSLAWTRYMALAGQPIQWA  423 (554)
T ss_dssp             ---CCEEEEEEEEEEEEEEEEECSSEEEEEEEEEEECCCC--------------CCCEEEEEEEEEEEEEEETTEEEEEE
T ss_pred             ---CCCCCCCEEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCEEE
T ss_conf             ---44431110588863168884785250343312355544554322235688774599999988999862057541231


Q ss_pred             EEEEEEEEECCCCCCCCHHEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCC--CCCCCEEEEEEE
Q ss_conf             999789851699741230127507897140212686155037997222147899999999614565--654537999999
Q gi|254780772|r  636 LRFGYGCVIPSNKNLQLFDQFSVSSNYYLRGFAYKGIGPRVDKKYAIGGKIYSSASAAVSFPMPLV--PERAGLRGAFFV  713 (781)
Q Consensus       636 ~~~g~~~~~~~~~~lp~~erF~lGG~~svRGy~~~~iGP~~~~~~~~GG~~~~~~s~E~r~pl~~~--~~~~~l~~~~F~  713 (781)
                      ..++  ..+ +++.+|++|+|++||.++||||+.+++         ++|+..+.+++|+++|++..  .....+.+.+|+
T Consensus       424 ~~~~--~q~-s~~~lp~~e~f~lGG~~sVRGy~~~~~---------l~Gd~g~~~~~El~~~~~~~~~~~~~~l~~~~F~  491 (554)
T 2qdz_A          424 SQLG--FQY-SRQQLLNSYQITVGDEYTVRGYNLRTS---------QSGDSGVYLSNTLTVPVQFSLLGKQASVAPFVGA  491 (554)
T ss_dssp             EEEE--EEE-CSSCSSSSEECCSCCCCCCTTCCCCCS---------CCSSCSSCCEESEEEEEEEEEEECCSSCEEEEEE
T ss_pred             EEEE--EEE-CCCCCCCCCEEEECCCCCCCCCCCCCC---------CCCCCEEEEEEEEEEECCCCCCCCCCEEEEEEEE
T ss_conf             0132--220-688777554696089982726378985---------3523369999999998655445666248999999


Q ss_pred             EEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCCC---EEEEEEEEEEECC
Q ss_conf             7677415666677544456766424799999997557001589988722677876---0258999641059
Q gi|254780772|r  714 DSATLYANHVALGADKLEGNDSFWRVSTGVEIMWNSPLGMMGVYYGIPLRHREGD---KIQQFGFRIGNRM  781 (781)
Q Consensus       714 D~G~v~~~~~~~~~~~~~~~~~~~r~s~G~Glr~~tP~Gpirld~a~pl~~~~~D---~~~~f~FsiG~~f  781 (781)
                      |+|+||++..+...        ...+|+|+|+||.+|+||++||||+||++.+++   ...+|||++|..|
T Consensus       492 D~G~v~~~~~~~~~--------~~l~g~G~Glr~~~p~g~l~~d~a~pl~~~~~~~~~~~~~~yfsig~~F  554 (554)
T 2qdz_A          492 DVGALKSNHPDART--------IRMAGLAAGVRFDLPYARMSFTYSKPVGAQPGGAPRAPVWLYINAGLSF  554 (554)
T ss_dssp             EEEEEECSSSSCCE--------EEEEEEEEEEEECCSSEEEEEEEEEECSCSCSSSCCCCSEEEEEEEEEC
T ss_pred             EEEEECCCCCCCCC--------CEEEEEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEC
T ss_conf             98995257888888--------7799999999998288799999999876898887578679999998389


No 4  
>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A
Probab=100.00  E-value=9.4e-39  Score=269.49  Aligned_cols=312  Identities=18%  Similarity=0.266  Sum_probs=255.9

Q ss_pred             EECCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCC-EEEEEEEEEECCCCCEEEEEEEE
Q ss_conf             93653657999565436988998873005786379999999999999999972970-01799876433898425889860
Q gi|254780772|r  111 IERKIINHLFFSGNNNLKDDQLKMIVRSRSAAAYDEDTVNADVHNIKQAYASIGYL-NVMVKVQHHSISPTTLNITYVIE  189 (781)
Q Consensus       111 ~e~p~i~~i~~~Gn~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~i~~~y~~~Gy~-~a~V~~~~~~~~~~~v~i~~~I~  189 (781)
                      -|..+|.+|.|+||+.++++.+...+++++|+++++..+++++++|   |. .||| +++|..  .    + ..|++.|.
T Consensus         5 a~~~~I~~I~i~G~~~v~~~~i~~~~~~~~G~~~~~~~i~~~ik~L---~~-tg~F~dV~v~~--~----g-~~l~i~v~   73 (335)
T 2qdf_A            5 AEGFVVKDIHFEGLQRVAVGAALLSMPVRTGDTVNDEDISNTIRAL---FA-TGNFEDVRVLR--D----G-DTLLVQVK   73 (335)
T ss_dssp             CCCEECCEEEEESCSSSCHHHHHHTSSCCTTCEECHHHHHHHHHHH---HT-TSCEEEEEEEE--E----T-TEEEEEEE
T ss_pred             CCCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHH---HH-CCCCCEEEEEE--C----C-CEEEEEEE
T ss_conf             6774897999999832799999974689999927999999999999---97-69942489997--2----8-88999888


Q ss_pred             CCCCEEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             36632467787504431101222211100122112445666431023333457888888754232210012310124555
Q gi|254780772|r  190 EGVKAKINSIRFVGNKNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFDEEAIRAFYHDRGYAAVKVSSQVLFDKQKS  269 (781)
Q Consensus       190 EG~~~~I~~I~f~Gn~~f~~~~L~~~~~~k~~~~~~~~~~~~~~~~~l~~D~~~l~~~Y~~~GY~d~~V~~~~~~~~~~~  269 (781)
                      |-|  .|.+|.|+||+.+++.+|++.+....     ...+..|++..+..+.++|+++|+.+||+++.|..... ..+..
T Consensus        74 e~p--~i~~i~~~Gn~~~~~~~l~~~~~~~~-----~~~g~~~~~~~~~~~~~~i~~~Y~~~Gy~~a~V~~~~~-~~~~~  145 (335)
T 2qdf_A           74 ERP--TIASITFSGNKSVKDDMLKQNLEASG-----VRVGESLDRTTIADIEKGLEDFYYSVGKYSASVKAVVT-PLPRN  145 (335)
T ss_dssp             ECC--EEEEEEEESCCSSCHHHHHHHHHTTT-----CCTTSBCCTTSHHHHHHHHHHHGGGGTBSSCEEEEEEE-EETTT
T ss_pred             ECC--CCCCCEEECCCCCCHHHHHHHHHHHC-----CCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEEEEEE-ECCCC
T ss_conf             645--31111266444233355545443202-----23456554345688999999999863725678877777-65777


Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC---------CCCEECCCCCCHHHHHCCCCCCCCCCCCCCC
Q ss_conf             5410122022221000001233344455767777532116---------9962112100000000000023445642011
Q gi|254780772|r  270 GYVLIFQIDEGEIYTVGNISIQSTLQEIQKKTLLSLIRIR---------SGNLYNPQEIKESSEKISKYFFSGERPFVRV  340 (781)
Q Consensus       270 ~~~i~~~I~EG~~y~i~~i~i~g~~~~~~~~~l~~~~~~k---------~G~~~~~~~~~~~~~~i~~~y~~~GY~fa~v  340 (781)
                      .+.|++.|+||+++++.+|.|.|+. .++...|.+.+..+         .+..|+...++.+.++|.++|.++||..++|
T Consensus       146 ~~~v~~~I~EG~~~~I~~I~f~Gn~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~l~~~y~~~Gy~d~~v  224 (335)
T 2qdf_A          146 RVDLKLVFQEGVSAEIQQINIVGNH-AFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNI  224 (335)
T ss_dssp             EEEEEEEEECCCBCEEEEEEEESCC-SSCHHHHHGGGSCC--------------CCSCHHHHHHHHHHHHHTTTCTTCEE
T ss_pred             CCCEEEEEECCCCEEEEEEEECCCC-CCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEC
T ss_conf             6313688512654179997631665-430456554333101221222234542005677777877667774301011101


Q ss_pred             C-CCCCCCCCCCEEEEEEECCCCCCCEEECCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHH----HC-CC
Q ss_conf             2-332234344046655412333220110033334320033210010010000000123444566677651----01-23
Q gi|254780772|r  341 K-TRINRDFAKRIVDIEYLIDQGSPLYVKRIEIEGNDQSYDSVIRRELELSEGDPINYSMIERAKRRIMAT----GY-FS  414 (781)
Q Consensus       341 ~-~~~~~d~~~~~vdi~~~I~eg~~~~i~~I~I~GN~~T~d~VIrrel~~~~Gd~~~~~~i~~s~~~L~~l----g~-F~  414 (781)
                      . +....+.+...++|++.|+||+++++++|.|.||....+..+++.+.++||++||..++.+++++|.++    || |.
T Consensus       225 ~~~~~~~~~d~~~~~i~~~i~EG~~y~v~~i~i~Gn~~~~~~~l~~~~~~k~G~~y~~~~i~~~~~~i~~~y~~~GY~~~  304 (335)
T 2qdf_A          225 DSTQVSLTPDKKGIYVTVNITEGDQYKLSGVEVSGNLAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYP  304 (335)
T ss_dssp             EEEEEEECTTSSEEEEEEEEECCCCCEEEEEEEEEECTTCHHHHHHHTCCCTTEECCHHHHHHHHHHHHHHHHTTTBSSC
T ss_pred             CCCEEEEECCCCCEEEEEEECCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf             33168885066440588731368459985118972443314679987457899950999999999999999986798414


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             44533254435654310233221122111
Q gi|254780772|r  415 EVNISQLPANDVSDYVILRVSVKQLSAGS  443 (781)
Q Consensus       415 ~V~i~~~~~~~~~~~vdl~i~v~E~~tg~  443 (781)
                      .|...+.+. ...+.|||.+.+.|.+.-.
T Consensus       305 ~V~~~~~~~-~~~~~vdv~~~I~eg~~~~  332 (335)
T 2qdf_A          305 RVQSMPEIN-DADKTVKLRVNVDAGNRFY  332 (335)
T ss_dssp             EEEEEEEEE-TTTTEEEEEEEEECCCBCC
T ss_pred             EEEEEEEEC-CCCCEEEEEEEEEECCCEE
T ss_conf             899777884-8899898999997289558


No 5  
>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane; 3.30A {Escherichia coli}
Probab=100.00  E-value=9e-36  Score=250.00  Aligned_cols=312  Identities=18%  Similarity=0.290  Sum_probs=250.0

Q ss_pred             EEECCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEEEEEE
Q ss_conf             99365365799956543698899887300578637999999999999999997297001799876433898425889860
Q gi|254780772|r  110 LIERKIINHLFFSGNNNLKDDQLKMIVRSRSAAAYDEDTVNADVHNIKQAYASIGYLNVMVKVQHHSISPTTLNITYVIE  189 (781)
Q Consensus       110 v~e~p~i~~i~~~Gn~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~i~~~y~~~Gy~~a~V~~~~~~~~~~~v~i~~~I~  189 (781)
                      +.+..+|.+|+|+||+.++++.+...+++++|+.+++..+++++++|   |. .|||. +|+.+.   + + ..|++.|.
T Consensus         3 ~a~~~~I~~I~i~G~~~i~~~~i~~~~~~~~G~~~~~~~i~~~ik~L---~~-tg~F~-~V~i~~---~-g-~~l~i~V~   72 (395)
T 3efc_A            3 MAEGFVVKDIHFEGLQRVAVGAALLSMPVRTGDTVNDEDISNTIRAL---FA-TGNFE-DVRVLR---D-G-DTLLVQVK   72 (395)
T ss_dssp             ---CCCEEEEECSCCSSSCHHHHHHTCSCCTTSCCCTHHHHHHHHHH---HH-HCCEE-EEEEEC---C-S-SEEEEEEE
T ss_pred             CCCCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHH---HH-CCCEE-EEEEEE---C-C-CEEEEEEE
T ss_conf             77771897899999841799999974689999937989999999999---96-79802-699996---2-9-99999999


Q ss_pred             CCCCEEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             36632467787504431101222211100122112445666431023333457888888754232210012310124555
Q gi|254780772|r  190 EGVKAKINSIRFVGNKNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFDEEAIRAFYHDRGYAAVKVSSQVLFDKQKS  269 (781)
Q Consensus       190 EG~~~~I~~I~f~Gn~~f~~~~L~~~~~~k~~~~~~~~~~~~~~~~~l~~D~~~l~~~Y~~~GY~d~~V~~~~~~~~~~~  269 (781)
                      |.|  .|.+|.|+||+.+++..|++.+....     ...+..+++..++.+.++|+++|.++||+++.|..... ..+..
T Consensus        73 E~p--~i~~i~~~Gn~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~Y~~~Gy~~~~v~~~~~-~~~~~  144 (395)
T 3efc_A           73 ERP--TIASITFSGNKSVKDDMLKQNLEASG-----VRVGESLDRTTIADIEKGLEDFYYSVGKYSASVKAVVT-PLPRN  144 (395)
T ss_dssp             ECC--EEEEEEEESCTTSCHHHHHHHHHHHT-----CCSSSCCCGGGHHHHHHHHHHHHHTTTCCSCEEEEECC-BCTTS
T ss_pred             ECC--EEEEEEEECCCCCCHHHHHHHHHCCC-----CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE-ECCCC
T ss_conf             446--16037999762134445433210134-----34444123566899999999999870863221023775-24675


Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC---------CCEECCCCCCHHHHHCCCCCCCCCCCCCCC
Q ss_conf             54101220222210000012333444557677775321169---------962112100000000000023445642011
Q gi|254780772|r  270 GYVLIFQIDEGEIYTVGNISIQSTLQEIQKKTLLSLIRIRS---------GNLYNPQEIKESSEKISKYFFSGERPFVRV  340 (781)
Q Consensus       270 ~~~i~~~I~EG~~y~i~~i~i~g~~~~~~~~~l~~~~~~k~---------G~~~~~~~~~~~~~~i~~~y~~~GY~fa~v  340 (781)
                      .+.+++.|+||++.++.+|.|.|+. .++..+|.+.+..++         +..|+...++.+.++|.++|.++||..++|
T Consensus       145 ~v~v~~~I~Eg~~~kI~~I~f~Gn~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~l~~~Y~~~Gy~d~~v  223 (395)
T 3efc_A          145 RVDLKLVFQEGVSAEIQQINIVGNH-AFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNI  223 (395)
T ss_dssp             EEEEEEEEECCCCCCCCCCEEESCC-SSCTTTTGGGCCCCSSCCSCCSCTTTHHHHHHHHHHHHHHHHHHHHTTCTTCEE
T ss_pred             EEEEEEEEECCCCCCCEEEEEECCC-CCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCHHCCCHHHHHHHHHHCCEEEEEE
T ss_conf             0554443200554221378983353-331155554443011100111013433222000031888888985567589997


Q ss_pred             CC-CCCCCCCCCEEEEEEECCCCCCCEEECCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHH----HHCCCC
Q ss_conf             23-3223434404665541233322011003333432003321001001000000012344456667765----101234
Q gi|254780772|r  341 KT-RINRDFAKRIVDIEYLIDQGSPLYVKRIEIEGNDQSYDSVIRRELELSEGDPINYSMIERAKRRIMA----TGYFSE  415 (781)
Q Consensus       341 ~~-~~~~d~~~~~vdi~~~I~eg~~~~i~~I~I~GN~~T~d~VIrrel~~~~Gd~~~~~~i~~s~~~L~~----lg~F~~  415 (781)
                      .. ....+.+...+.++|.|+||+++++++|.|.||..-.+..+.+.+.++||++|+...+.+...+|..    .||.. 
T Consensus       224 ~~~~~~~~~~~~~v~i~i~i~EG~~y~v~~i~i~Gn~~~~~~~l~~~l~~~~g~~f~~~~~~~~~~~i~~~y~~~GY~~-  302 (395)
T 3efc_A          224 DSTQVSLTPDKKGIYVTVNITEGDQYKLSGVEVSGNLAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAY-  302 (395)
T ss_dssp             EECCCEECTTSCSEECEEEEECCCCCEEEEECCBSCCTTCHHHHHHTCCCCSSCBCCHHHHHHHHHHHHHHHHHTTCSS-
T ss_pred             CCCEEEECCCCCCCEEEEECCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCC-
T ss_conf             0216898157775157530244404788776650572000134555543204632340121002457899997517532-


Q ss_pred             CCCCCCC-CCCCCCCCCCCCCCCCCCC
Q ss_conf             4533254-4356543102332211221
Q gi|254780772|r  416 VNISQLP-ANDVSDYVILRVSVKQLSA  441 (781)
Q Consensus       416 V~i~~~~-~~~~~~~vdl~i~v~E~~t  441 (781)
                      +.+.+.+ ....+..++|.+.+.|.+.
T Consensus       303 a~v~~~~~~~~~~~~v~l~~~I~eg~~  329 (395)
T 3efc_A          303 PRVQSMPEINDADKTVKLRVNVDAGNR  329 (395)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEECCCC
T ss_pred             CCCCCCCEECCCCCEEEEEEEECCCCC
T ss_conf             124663045056738999999844881


No 6  
>3mc9_A ALR2269 protein; polypeptide transport associated, potra, outer bacterial MEM protein membrane transport, beta barrel biogenesis, membran; 2.20A {Nostoc SP} PDB: 3mc8_A
Probab=100.00  E-value=2.8e-35  Score=246.74  Aligned_cols=234  Identities=21%  Similarity=0.346  Sum_probs=187.4

Q ss_pred             CEEEEEEEEECCCCCCHH----HHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEC----CEEEEEEEECCEE
Q ss_conf             526858999665007988----99997487898826889999999999967980038999869----9899999936536
Q gi|254780772|r   45 TSIVRRIEIRGATNVGKE----VILSRIPVVVGQSISDADLDHAVKNIYAMGYFSNVKIKIVD----SVLIIDLIERKII  116 (781)
Q Consensus        45 ~~~i~~I~i~G~~~i~~~----~i~~~~~~~~G~~~~~~~i~~~i~~l~~~g~F~~v~~~~~~----~~l~~~v~e~p~i  116 (781)
                      ...|++|.|+|+...++.    .|+..|.+|+|+.++++.|++|+++||+||||+||++..++    ..|+|.|.|+|+|
T Consensus        61 ~v~i~eV~i~G~~~~~~~eLe~~i~~~i~~r~G~~~s~~~l~~di~~L~~tG~F~~V~~~~~~~~~gv~l~~~v~e~p~i  140 (316)
T 3mc9_A           61 RVLVSEVLVRPQSGQLTPELETQVYNVIRTQPGRTTTRSQLQEDINAIFGTGFFSNVQASPEDTPLGVRVSFIVQPNPVL  140 (316)
T ss_dssp             CEEEEEEEEEESSSCCCHHHHHHHHHHCCCCTTSEECHHHHHHHHHHHHHTSCEEEEEEEEEEETTEEEEEEEEEECCBC
T ss_pred             CEEEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCEEEEEEEEECCEE
T ss_conf             15789999980678888899999998601689982799999999999997599115899987469855999999878789


Q ss_pred             EEEEEECCCC------CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEEEEEEC
Q ss_conf             5799956543------6988998873005786379999999999999999972970017998764338984258898603
Q gi|254780772|r  117 NHLFFSGNNN------LKDDQLKMIVRSRSAAAYDEDTVNADVHNIKQAYASIGYLNVMVKVQHHSISPTTLNITYVIEE  190 (781)
Q Consensus       117 ~~i~~~Gn~~------~~~~~l~~~~~~~~g~~~~~~~~~~~~~~i~~~y~~~Gy~~a~V~~~~~~~~~~~v~i~~~I~E  190 (781)
                      ..|.|+||..      ++.+.|.+.+.++.|++|+...+++++++|+++|.++||+.|+|.......+++.         
T Consensus       141 ~~i~i~Gn~~~~~~~ll~~~~l~~~~~~~~G~~~n~~~l~~~~~~I~~~Y~~~GY~~a~V~~~~~~~~~g~---------  211 (316)
T 3mc9_A          141 SKVEIQANPGTNVPSVLPQATADEIFRAQYGKILNLRDLQEGIKELTKRYQDQGYVLANVVGAPQVSENGV---------  211 (316)
T ss_dssp             CEEEEECCC----CCSSCTTHHHHHHGGGTTSBCCHHHHHHHHHHHHHHHHHTTCTTCEECSSCEECTTSE---------
T ss_pred             EEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCC---------
T ss_conf             99999744334644448899999875004798158889999999999999764912689986324246655---------


Q ss_pred             CCCEEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             66324677875044311012222111001221124456664310233334578888887542322100123101245555
Q gi|254780772|r  191 GVKAKINSIRFVGNKNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFDEEAIRAFYHDRGYAAVKVSSQVLFDKQKSG  270 (781)
Q Consensus       191 G~~~~I~~I~f~Gn~~f~~~~L~~~~~~k~~~~~~~~~~~~~~~~~l~~D~~~l~~~Y~~~GY~d~~V~~~~~~~~~~~~  270 (781)
                                                                                                      
T Consensus       212 --------------------------------------------------------------------------------  211 (316)
T 3mc9_A          212 --------------------------------------------------------------------------------  211 (316)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
T ss_conf             --------------------------------------------------------------------------------


Q ss_pred             CCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEECCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             41012202222100000123334445576777753211699621121000000000000234456420112332234344
Q gi|254780772|r  271 YVLIFQIDEGEIYTVGNISIQSTLQEIQKKTLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPFVRVKTRINRDFAK  350 (781)
Q Consensus       271 ~~i~~~I~EG~~y~i~~i~i~g~~~~~~~~~l~~~~~~k~G~~~~~~~~~~~~~~i~~~y~~~GY~fa~v~~~~~~d~~~  350 (781)
                        |++.|.||.   +..+.                                                             
T Consensus       212 --v~l~V~eg~---~~~i~-------------------------------------------------------------  225 (316)
T 3mc9_A          212 --VTLQVAEGV---VENIS-------------------------------------------------------------  225 (316)
T ss_dssp             --EEEEEECCE---EC----------------------------------------------------------------
T ss_pred             --CEEEEEEEC---CCCCE-------------------------------------------------------------
T ss_conf             --215898511---22102-------------------------------------------------------------


Q ss_pred             CEEEEEEECCCCCCCEEECCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             04665541233322011003333432003321001001000000012344456667765101234453325443565431
Q gi|254780772|r  351 RIVDIEYLIDQGSPLYVKRIEIEGNDQSYDSVIRRELELSEGDPINYSMIERAKRRIMATGYFSEVNISQLPANDVSDYV  430 (781)
Q Consensus       351 ~~vdi~~~I~eg~~~~i~~I~I~GN~~T~d~VIrrel~~~~Gd~~~~~~i~~s~~~L~~lg~F~~V~i~~~~~~~~~~~v  430 (781)
                          +.+...+|.+.+...+.+.|  +|+|+||+|+|.++||++||..++++++++|+++|||++|++.+.|.. .++.+
T Consensus       226 ----v~~~~~eg~~~~~~~~~~~g--~T~~~vI~Rel~~~~G~~fn~~~l~~d~~rL~~lg~F~~V~v~~~p~~-d~~~v  298 (316)
T 3mc9_A          226 ----VRFRNKEGQDVNEQGQPIRG--RTQDYIITREVELKPGQVFNRNTVQKDLQRVFGTGLFEDVNVSLDPGT-DPTKV  298 (316)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ----EEEEECCCCEEEEECCCCCC--CCCCHHEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECC-CCCEE
T ss_conf             ----47872365157750321112--331331444343389987799999999999985699616689987658-99938


Q ss_pred             CCCCCCCCCC
Q ss_conf             0233221122
Q gi|254780772|r  431 ILRVSVKQLS  440 (781)
Q Consensus       431 dl~i~v~E~~  440 (781)
                      +|.++|+|+.
T Consensus       299 ~v~i~V~E~s  308 (316)
T 3mc9_A          299 NVVVNVVERS  308 (316)
T ss_dssp             ----------
T ss_pred             EEEEEEEECC
T ss_conf             9999999536


No 7  
>2x8x_X TLR1789 protein, OMP85; chaperone, TOC75, protein targeting; 1.97A {Thermosynechococcus elongatus}
Probab=100.00  E-value=8.6e-35  Score=243.57  Aligned_cols=232  Identities=17%  Similarity=0.242  Sum_probs=198.2

Q ss_pred             CCCCEEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             36632467787504431101222211100122112445666431023333457888888754232210012310124555
Q gi|254780772|r  190 EGVKAKINSIRFVGNKNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFDEEAIRAFYHDRGYAAVKVSSQVLFDKQKS  269 (781)
Q Consensus       190 EG~~~~I~~I~f~Gn~~f~~~~L~~~~~~k~~~~~~~~~~~~~~~~~l~~D~~~l~~~Y~~~GY~d~~V~~~~~~~~~~~  269 (781)
                      |||+++|.+|.|+||+.+++..|+..|.+++.        +.|+++.++.|+++|   |++.||.|++|...    .  .
T Consensus         1 e~~~~~i~~i~i~G~~~~~~~~l~~~i~~~~g--------~~~~~~~l~~d~~~l---~~~g~f~dv~v~~~----~--~   63 (235)
T 2x8x_X            1 DEPKVLIAEVVVEGATPELEQLVYQVISTRPG--------STTTRTQLQQDTNAI---FATGFFADVNAVPR----D--T   63 (235)
T ss_dssp             CCCCEEEEEEEEESCCHHHHHHHHHHCCCCTT--------CEECHHHHHHHHHHH---HTTSCEEEEEEEEE----E--E
T ss_pred             CCCEEEEEEEEEECCCCCCHHHHHHHCCCCCC--------CCCCHHHHHHHHHHH---HHCCCEEEEEECCC----C--C
T ss_conf             99729999999999970798899975467899--------854999999999999---98498146763034----4--6


Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEECCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             54101220222210000012333444557677775321169962112100000000000023445642011233223434
Q gi|254780772|r  270 GYVLIFQIDEGEIYTVGNISIQSTLQEIQKKTLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPFVRVKTRINRDFA  349 (781)
Q Consensus       270 ~~~i~~~I~EG~~y~i~~i~i~g~~~~~~~~~l~~~~~~k~G~~~~~~~~~~~~~~i~~~y~~~GY~fa~v~~~~~~d~~  349 (781)
                      ...+.+.+.+|+++.+++|.|+|+ ..++.++|.+.+.+++|++|+...++++.++|.+.|.++||++++|.+....+. 
T Consensus        64 ~~~v~~~~~~~~~~~i~~i~~~G~-~~~~~~~l~~~l~~~~g~~~~~~~l~~~~~~i~~~y~~~Gy~~a~v~~~~~~~~-  141 (235)
T 2x8x_X           64 PLGVRITFVVRPYPVLRAVQVAGN-QVLTQEKVNEIFAPQIGRTLNLRELQAGIEKINTFYRDNGYILGQVVGTPQVDP-  141 (235)
T ss_dssp             TTEEEEEEEEEECCBCCEEEEESC-SSSCHHHHHHHHGGGTTSBCCHHHHHHHHHHHHHHHHHTTCTTCEEEEEEEECT-
T ss_pred             CCCCEEEEEECCCEEEEEEEEECC-CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECC-
T ss_conf             677158998602108999999898-458999999887541476358999999999999999867923799997567357-


Q ss_pred             CCEEEEEEECCCCCCCEEECCCCCC---CCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             4046655412333220110033334---3200332100100100000001234445666776510123445332544356
Q gi|254780772|r  350 KRIVDIEYLIDQGSPLYVKRIEIEG---NDQSYDSVIRRELELSEGDPINYSMIERAKRRIMATGYFSEVNISQLPANDV  426 (781)
Q Consensus       350 ~~~vdi~~~I~eg~~~~i~~I~I~G---N~~T~d~VIrrel~~~~Gd~~~~~~i~~s~~~L~~lg~F~~V~i~~~~~~~~  426 (781)
                      ++.+.+.+.+.++.++++..|.+.|   |.+|++++|+|++.+.||++|+..++++++++|+++|+|++|++.+.|.. .
T Consensus       142 ~~~~~~~v~~~~~~~~~~~~i~~~~~~~~~~t~~~vi~r~~~~~~G~~~~~~~l~~~~~~L~~~~~f~~V~i~~~~~~-~  220 (235)
T 2x8x_X          142 DGVVTLQVAEGVVEQVTYRFLNKEGEPTKQRTRDFVISREMDTQPGVVLNQKTVQADLRRLFELGLFEDVQVALEPGQ-N  220 (235)
T ss_dssp             TSEEEEEEECCBEEEEEEEEBCTTSCBCCCCSCHHHHHTTCSCCTTSBCCHHHHHHHHHHHHHHTCEEEEEEEEEECS-S
T ss_pred             CCEEEEEEEEEECCEEEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECC-C
T ss_conf             984899999951101478874102476655427887431102589984699999999999984799614589973069-9


Q ss_pred             CCCCCCCCCCCCCCC
Q ss_conf             543102332211221
Q gi|254780772|r  427 SDYVILRVSVKQLSA  441 (781)
Q Consensus       427 ~~~vdl~i~v~E~~t  441 (781)
                      ++.+||.++|+|+||
T Consensus       221 ~~~vdl~v~V~E~~T  235 (235)
T 2x8x_X          221 PRRVNLILNIKERNT  235 (235)
T ss_dssp             TTSEEEEEEEEECCC
T ss_pred             CCEEEEEEEEEECCC
T ss_conf             994899999985789


No 8  
>2x8x_X TLR1789 protein, OMP85; chaperone, TOC75, protein targeting; 1.97A {Thermosynechococcus elongatus}
Probab=99.97  E-value=8.8e-29  Score=204.25  Aligned_cols=223  Identities=14%  Similarity=0.204  Sum_probs=184.4

Q ss_pred             CEEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEE--C--CEEEEEEEECCEEEEEE
Q ss_conf             5268589996650079889999748789882688999999999996798003899986--9--98999999365365799
Q gi|254780772|r   45 TSIVRRIEIRGATNVGKEVILSRIPVVVGQSISDADLDHAVKNIYAMGYFSNVKIKIV--D--SVLIIDLIERKIINHLF  120 (781)
Q Consensus        45 ~~~i~~I~i~G~~~i~~~~i~~~~~~~~G~~~~~~~i~~~i~~l~~~g~F~~v~~~~~--~--~~l~~~v~e~p~i~~i~  120 (781)
                      ...|++|.|+||+.++++.++..+.+++|+.+++..+++++++||++|+|+||++..+  +  ..++|.+.|+|.|.+|.
T Consensus         4 ~~~i~~i~i~G~~~~~~~~l~~~i~~~~g~~~~~~~l~~d~~~l~~~g~f~dv~v~~~~~~~~v~~~~~~~~~~~i~~i~   83 (235)
T 2x8x_X            4 KVLIAEVVVEGATPELEQLVYQVISTRPGSTTTRTQLQQDTNAIFATGFFADVNAVPRDTPLGVRITFVVRPYPVLRAVQ   83 (235)
T ss_dssp             CEEEEEEEEESCCHHHHHHHHHHCCCCTTCEECHHHHHHHHHHHHTTSCEEEEEEEEEEETTEEEEEEEEEECCBCCEEE
T ss_pred             EEEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEECCCEEEEEEE
T ss_conf             29999999999970798899975467899854999999999999984981467630344667715899860210899999


Q ss_pred             EECCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEEEEEECCCCEEEEEEE
Q ss_conf             95654369889988730057863799999999999999999729700179987643389842588986036632467787
Q gi|254780772|r  121 FSGNNNLKDDQLKMIVRSRSAAAYDEDTVNADVHNIKQAYASIGYLNVMVKVQHHSISPTTLNITYVIEEGVKAKINSIR  200 (781)
Q Consensus       121 ~~Gn~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~i~~~y~~~Gy~~a~V~~~~~~~~~~~v~i~~~I~EG~~~~I~~I~  200 (781)
                      |+||..+++++|.+.+.+++|++|++..+++++++|+++|+++||..|.|.......+++.+.+.+.+.++.++.+..|.
T Consensus        84 ~~G~~~~~~~~l~~~l~~~~g~~~~~~~l~~~~~~i~~~y~~~Gy~~a~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~  163 (235)
T 2x8x_X           84 VAGNQVLTQEKVNEIFAPQIGRTLNLRELQAGIEKINTFYRDNGYILGQVVGTPQVDPDGVVTLQVAEGVVEQVTYRFLN  163 (235)
T ss_dssp             EESCSSSCHHHHHHHHGGGTTSBCCHHHHHHHHHHHHHHHHHTTCTTCEEEEEEEECTTSEEEEEEECCBEEEEEEEEBC
T ss_pred             EECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCEEEEEEEEEECCEEEEEEEE
T ss_conf             98984589999998875414763589999999999999998679237999975673579848999999511014788741


Q ss_pred             EEC---CCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCCCCCCCCCCEEEE
Q ss_conf             504---431101222211100122112445666431023333457888888754232-2100123101245555410122
Q gi|254780772|r  201 FVG---NKNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFDEEAIRAFYHDRGYA-AVKVSSQVLFDKQKSGYVLIFQ  276 (781)
Q Consensus       201 f~G---n~~f~~~~L~~~~~~k~~~~~~~~~~~~~~~~~l~~D~~~l~~~Y~~~GY~-d~~V~~~~~~~~~~~~~~i~~~  276 (781)
                      +.|   |....+.-+++.+.        +..++.|++..++.++.+|   |+ .||| ++++..  ....+.+.+.|.+.
T Consensus       164 ~~~~~~~~~t~~~vi~r~~~--------~~~G~~~~~~~l~~~~~~L---~~-~~~f~~V~i~~--~~~~~~~~vdl~v~  229 (235)
T 2x8x_X          164 KEGEPTKQRTRDFVISREMD--------TQPGVVLNQKTVQADLRRL---FE-LGLFEDVQVAL--EPGQNPRRVNLILN  229 (235)
T ss_dssp             TTSCBCCCCSCHHHHHTTCS--------CCTTSBCCHHHHHHHHHHH---HH-HTCEEEEEEEE--EECSSTTSEEEEEE
T ss_pred             CCCCCCCCCCHHHHHHHHCC--------CCCCCCCCHHHHHHHHHHH---HH-CCCCCEEEEEE--EECCCCCEEEEEEE
T ss_conf             02476655427887431102--------5899846999999999999---84-79961458997--30699994899999


Q ss_pred             ECCCC
Q ss_conf             02222
Q gi|254780772|r  277 IDEGE  281 (781)
Q Consensus       277 I~EG~  281 (781)
                      |.|++
T Consensus       230 V~E~~  234 (235)
T 2x8x_X          230 IKERN  234 (235)
T ss_dssp             EEECC
T ss_pred             EEECC
T ss_conf             98578


No 9  
>3og5_A Outer membrane protein assembly complex, YAET Pro; potra fold, insertion of outer membrane proteins, protein BI; 2.69A {Escherichia coli}
Probab=99.97  E-value=2e-31  Score=221.49  Aligned_cols=163  Identities=25%  Similarity=0.431  Sum_probs=156.2

Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEECCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf             22210000012333444557677775321169962112100000000000023445642011233223434404665541
Q gi|254780772|r  279 EGEIYTVGNISIQSTLQEIQKKTLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPFVRVKTRINRDFAKRIVDIEYL  358 (781)
Q Consensus       279 EG~~y~i~~i~i~g~~~~~~~~~l~~~~~~k~G~~~~~~~~~~~~~~i~~~y~~~GY~fa~v~~~~~~d~~~~~vdi~~~  358 (781)
                      +|+||+|++|+|.||. .++.++|.+.+++++|++|+...++++.++|.++|.++||+||+|.+.+..+..+++|+++|.
T Consensus         2 ~~e~y~v~~I~~~Gn~-~~~~~~l~~~l~lk~G~~~~~~~i~~~~~~l~~~y~~~Gy~~a~V~~~~~~~~~~~~v~i~~~   80 (166)
T 3og5_A            2 AMDQYKLSGVEVSGNL-AGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPEINDADKTVKLRVN   80 (166)
T ss_dssp             CCTTSEEEEEEEEEEC-TTCHHHHHHHHCCCTTCBCCHHHHHHHHHHHHHHHHTTTCCSCEEEEEEEEETTTTEEEEEEE
T ss_pred             CCCCEEEEEEEEECCC-CCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCEEEEEEE
T ss_conf             8677089889998578-789899998855688861249999999999999999779745898520067258887879999


Q ss_pred             CCCCCCCEEECCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             23332201100333343200332100100100000001234445666776510123445332544356543102332211
Q gi|254780772|r  359 IDQGSPLYVKRIEIEGNDQSYDSVIRRELELSEGDPINYSMIERAKRRIMATGYFSEVNISQLPANDVSDYVILRVSVKQ  438 (781)
Q Consensus       359 I~eg~~~~i~~I~I~GN~~T~d~VIrrel~~~~Gd~~~~~~i~~s~~~L~~lg~F~~V~i~~~~~~~~~~~vdl~i~v~E  438 (781)
                      |+||++++|++|.|.||.+|+|.+|+|+|.++||++|+..++++++++|+++|||+.|.+.+.+.+..++.++|.+.|+|
T Consensus        81 i~eG~~~~i~~I~i~Gn~~~~~~~l~r~~~~~~G~~~~~~~l~~~~~~L~~~g~F~~v~i~~~~~~~~~~~v~i~i~v~E  160 (166)
T 3og5_A           81 VDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVDQGKERLNRLGFFETVDTDTQRVPGSPDQVDVVYKVKE  160 (166)
T ss_dssp             EECCCCCEEEEEEEESCCSSCHHHHHTTCCSCTTSBCCHHHHHHHHHHHHTTSCEEEEEEEEEECTTCSSEEEEEEEEEE
T ss_pred             EECCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCEEEEEEEEEE
T ss_conf             81471577500111124555189999986402577748789999999998469951426763226899986999999996


Q ss_pred             CCCC
Q ss_conf             2211
Q gi|254780772|r  439 LSAG  442 (781)
Q Consensus       439 ~~tg  442 (781)
                      +|||
T Consensus       161 ~~tG  164 (166)
T 3og5_A          161 RNTG  164 (166)
T ss_dssp             C---
T ss_pred             CCCC
T ss_conf             7899


No 10 
>3og5_A Outer membrane protein assembly complex, YAET Pro; potra fold, insertion of outer membrane proteins, protein BI; 2.69A {Escherichia coli}
Probab=99.88  E-value=1.4e-21  Score=157.00  Aligned_cols=158  Identities=16%  Similarity=0.254  Sum_probs=137.6

Q ss_pred             EECCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEE-ECCCCCEEEEEEEE
Q ss_conf             93653657999565436988998873005786379999999999999999972970017998764-33898425889860
Q gi|254780772|r  111 IERKIINHLFFSGNNNLKDDQLKMIVRSRSAAAYDEDTVNADVHNIKQAYASIGYLNVMVKVQHH-SISPTTLNITYVIE  189 (781)
Q Consensus       111 ~e~p~i~~i~~~Gn~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~i~~~y~~~Gy~~a~V~~~~~-~~~~~~v~i~~~I~  189 (781)
                      .|++.|.+|.|+||..+++++|.+.+.+++|++|++..+.+++++|+++|.++||++|+|++... ..+++.++|+|.|+
T Consensus         3 ~e~y~v~~I~~~Gn~~~~~~~l~~~l~lk~G~~~~~~~i~~~~~~l~~~y~~~Gy~~a~V~~~~~~~~~~~~v~i~~~i~   82 (166)
T 3og5_A            3 MDQYKLSGVEVSGNLAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPEINDADKTVKLRVNVD   82 (166)
T ss_dssp             CTTSEEEEEEEEEECTTCHHHHHHHHCCCTTCBCCHHHHHHHHHHHHHHHHTTTCCSCEEEEEEEEETTTTEEEEEEEEE
T ss_pred             CCCEEEEEEEEECCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCEEEEEEEEE
T ss_conf             67708988999857878989999885568886124999999999999999977974589852006725888787999981


Q ss_pred             CCCCEEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCCCCCCC
Q ss_conf             366324677875044311012222111001221124456664310233334578888887542322-1001231012455
Q gi|254780772|r  190 EGVKAKINSIRFVGNKNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFDEEAIRAFYHDRGYAA-VKVSSQVLFDKQK  268 (781)
Q Consensus       190 EG~~~~I~~I~f~Gn~~f~~~~L~~~~~~k~~~~~~~~~~~~~~~~~l~~D~~~l~~~Y~~~GY~d-~~V~~~~~~~~~~  268 (781)
                      ||+++.|.+|.|.||..++++.|++.|..++.        +.|++..++.+.++|.+    .|||+ +.|.... ...+.
T Consensus        83 eG~~~~i~~I~i~Gn~~~~~~~l~r~~~~~~G--------~~~~~~~l~~~~~~L~~----~g~F~~v~i~~~~-~~~~~  149 (166)
T 3og5_A           83 AGNRFYVRKIRFEGNDTSKDAVLRREMRQMEG--------AWLGSDLVDQGKERLNR----LGFFETVDTDTQR-VPGSP  149 (166)
T ss_dssp             CCCCCEEEEEEEESCCSSCHHHHHTTCCSCTT--------SBCCHHHHHHHHHHHHT----TSCEEEEEEEEEE-CTTCS
T ss_pred             CCCEEEEECCCCCCCCCCCHHHHHHHHHCCCC--------CCCCHHHHHHHHHHHHH----CCCCEEEEEEEEE-CCCCC
T ss_conf             47157750011112455518999998640257--------77487899999999984----6995142676322-68999


Q ss_pred             CCCCEEEEECCCC
Q ss_conf             5541012202222
Q gi|254780772|r  269 SGYVLIFQIDEGE  281 (781)
Q Consensus       269 ~~~~i~~~I~EG~  281 (781)
                      ..+.|++.|.|++
T Consensus       150 ~~v~i~i~v~E~~  162 (166)
T 3og5_A          150 DQVDVVYKVKERN  162 (166)
T ss_dssp             SEEEEEEEEEEC-
T ss_pred             CEEEEEEEEEECC
T ss_conf             8699999999678


No 11 
>3mc9_A ALR2269 protein; polypeptide transport associated, potra, outer bacterial MEM protein membrane transport, beta barrel biogenesis, membran; 2.20A {Nostoc SP} PDB: 3mc8_A
Probab=99.67  E-value=2.6e-15  Score=116.05  Aligned_cols=152  Identities=14%  Similarity=0.248  Sum_probs=105.6

Q ss_pred             CCEEEEEEEEECCCCCCHHHHHH----HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             63246778750443110122221----11001221124456664310233334578888887542322100123101245
Q gi|254780772|r  192 VKAKINSIRFVGNKNYSHARLER----VISIRTSGYFSFGKTDVYSKERMSFDEEAIRAFYHDRGYAAVKVSSQVLFDKQ  267 (781)
Q Consensus       192 ~~~~I~~I~f~Gn~~f~~~~L~~----~~~~k~~~~~~~~~~~~~~~~~l~~D~~~l~~~Y~~~GY~d~~V~~~~~~~~~  267 (781)
                      +++.|..|.|+||..+++.+|..    .|.+++        ++.|+++.++.|+++|   | +-||| ..|+..  ....
T Consensus        60 ~~v~i~eV~i~G~~~~~~~eLe~~i~~~i~~r~--------G~~~s~~~l~~di~~L---~-~tG~F-~~V~~~--~~~~  124 (316)
T 3mc9_A           60 PRVLVSEVLVRPQSGQLTPELETQVYNVIRTQP--------GRTTTRSQLQEDINAI---F-GTGFF-SNVQAS--PEDT  124 (316)
T ss_dssp             CCEEEEEEEEEESSSCCCHHHHHHHHHHCCCCT--------TSEECHHHHHHHHHHH---H-HTSCE-EEEEEE--EEEE
T ss_pred             CCEEEEEEEEEECCCCCCHHHHHHHHHHCCCCC--------CCCCCHHHHHHHHHHH---H-HCCCC-EEEEEE--EEEC
T ss_conf             715789999980678888899999998601689--------9827999999999999---9-75991-158999--8746


Q ss_pred             CCCCCEEEEECCCCCCCCCCCCCCCCC-----CCCCHHHHHHHHHCCCCCEECCCCCCHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             555410122022221000001233344-----455767777532116996211210000000000002344564201123
Q gi|254780772|r  268 KSGYVLIFQIDEGEIYTVGNISIQSTL-----QEIQKKTLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPFVRVKT  342 (781)
Q Consensus       268 ~~~~~i~~~I~EG~~y~i~~i~i~g~~-----~~~~~~~l~~~~~~k~G~~~~~~~~~~~~~~i~~~y~~~GY~fa~v~~  342 (781)
                      ..++.|+|.|.|++.  ++.|.|.|+.     ..++.+.|++.+.+++|++|+...+++++++|.++|.++||.+|+|.+
T Consensus       125 ~~gv~l~~~v~e~p~--i~~i~i~Gn~~~~~~~ll~~~~l~~~~~~~~G~~~n~~~l~~~~~~I~~~Y~~~GY~~a~V~~  202 (316)
T 3mc9_A          125 PLGVRVSFIVQPNPV--LSKVEIQANPGTNVPSVLPQATADEIFRAQYGKILNLRDLQEGIKELTKRYQDQGYVLANVVG  202 (316)
T ss_dssp             TTEEEEEEEEEECCB--CCEEEEECCC----CCSSCTTHHHHHHGGGTTSBCCHHHHHHHHHHHHHHHHHTTCTTCEECS
T ss_pred             CCCEEEEEEEEECCE--EEEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf             985599999987878--999999744334644448899999875004798158889999999999999764912689986


Q ss_pred             CCCCCCCCCEEEEEEECCCCC
Q ss_conf             322343440466554123332
Q gi|254780772|r  343 RINRDFAKRIVDIEYLIDQGS  363 (781)
Q Consensus       343 ~~~~d~~~~~vdi~~~I~eg~  363 (781)
                      ....+. ++.  +.+.|.+|.
T Consensus       203 ~~~~~~-~g~--v~l~V~eg~  220 (316)
T 3mc9_A          203 APQVSE-NGV--VTLQVAEGV  220 (316)
T ss_dssp             SCEECT-TSE--EEEEEECCE
T ss_pred             EEEECC-CCC--CEEEEEEEC
T ss_conf             324246-655--215898511


No 12 
>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis}
Probab=99.50  E-value=1.1e-13  Score=105.49  Aligned_cols=167  Identities=12%  Similarity=0.053  Sum_probs=127.7

Q ss_pred             CCEEEEEEEECCCCEEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             84258898603663246778750443110122221110012211244566643102333345788888875423221001
Q gi|254780772|r  180 TTLNITYVIEEGVKAKINSIRFVGNKNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFDEEAIRAFYHDRGYAAVKVS  259 (781)
Q Consensus       180 ~~v~i~~~I~EG~~~~I~~I~f~Gn~~f~~~~L~~~~~~k~~~~~~~~~~~~~~~~~l~~D~~~l~~~Y~~~GY~d~~V~  259 (781)
                      ....+...+++|+++.|+.|.|+|++.+++.+|..++....        +..++...+...+++|.++|+++||+.++|.
T Consensus        45 ~~~~~~~~~~~g~~~~v~~i~~~g~~~~~~~~l~~~~~~~~--------G~~~~~~~l~~~~~~i~~~y~~~GY~~a~v~  116 (554)
T 2qdz_A           45 AAPARKPDATSGHTVTVHAVDLDFGVEGRLFDPAPLVQDYL--------NRPLDNEQLFLLVKALSAALYDRGYATSIVT  116 (554)
T ss_dssp             --------CBCCCSSSSCCEEEECCSSSCCCSCSTTSTTSS--------SSCBCSTTHHHHHHHHHHHHHHTTCTTCEEE
T ss_pred             CCCCCCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             77754466888863899999984886589899998778625--------9846999999999999999997898468987


Q ss_pred             CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCH---HHHHHHHHCCCCCEECCCCCCHHHHHCCCCCCCCCCC
Q ss_conf             2310124555541012202222100000123334445576---7777532116996211210000000000002344564
Q gi|254780772|r  260 SQVLFDKQKSGYVLIFQIDEGEIYTVGNISIQSTLQEIQK---KTLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERP  336 (781)
Q Consensus       260 ~~~~~~~~~~~~~i~~~I~EG~~y~i~~i~i~g~~~~~~~---~~l~~~~~~k~G~~~~~~~~~~~~~~i~~~y~~~GY~  336 (781)
                      .+   ..+-....|++.|.||   +++.|.++|+.. ...   ..+...+++++|++|+..++++.++.|.+    .|+ 
T Consensus       117 ~~---~q~~~~g~l~i~v~eG---~i~~i~i~g~~~-~~~~~~~~~~~~~~~~~g~~~~~~~le~~~~~l~~----~g~-  184 (554)
T 2qdz_A          117 FV---PPGVVDGVLKLKVEWG---RIKGWLIDGKPL-EGTRDRMMVFSAMPGWQDKVLNVFDIDQAIYNINN----GGK-  184 (554)
T ss_dssp             EE---EEEEETTEEEEEEECC---EEEEEEETTEEC-CSHHHHHHHHHHSTTCTTCBCCHHHHHHHHHHHCS----SSE-
T ss_pred             EC---CCCCCCCEEEEEEEEC---EEEEEEEECCCC-CCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH----CCC-
T ss_conf             12---4347686799999985---155689832555-67136666776476777884678899999998750----586-


Q ss_pred             CCCCCCCCCCCCCCCEEEEEEECCCCCCCEEE
Q ss_conf             20112332234344046655412333220110
Q gi|254780772|r  337 FVRVKTRINRDFAKRIVDIEYLIDQGSPLYVK  368 (781)
Q Consensus       337 fa~v~~~~~~d~~~~~vdi~~~I~eg~~~~i~  368 (781)
                      ++++...  +....+..++.+.+.+.++..+.
T Consensus       185 ~~~v~l~--p~~~~g~~~~~v~v~~~~~~~~~  214 (554)
T 2qdz_A          185 TGNITIV--PADEYGYSYLDLQLQRRALPRVS  214 (554)
T ss_dssp             EEEEEEE--ECSSTTEEEEEEEEEECCSCEEE
T ss_pred             CEEEEEE--ECCCCCCCEEEEEEEECCCCCCC
T ss_conf             2258986--07889852267898873555321


No 13 
>2vh2_A FTSQ, cell division protein FTSQ; potra, cell cycle; 3.4A {Yersinia enterocolitica}
Probab=96.40  E-value=0.0094  Score=33.86  Aligned_cols=71  Identities=11%  Similarity=0.178  Sum_probs=59.8

Q ss_pred             EEEEEEEECC-CCCCHHHHHHH-CCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEE-CCEEEEEEEECCEEE
Q ss_conf             6858999665-00798899997-48789882688999999999996798003899986-998999999365365
Q gi|254780772|r   47 IVRRIEIRGA-TNVGKEVILSR-IPVVVGQSISDADLDHAVKNIYAMGYFSNVKIKIV-DSVLIIDLIERKIIN  117 (781)
Q Consensus        47 ~i~~I~i~G~-~~i~~~~i~~~-~~~~~G~~~~~~~i~~~i~~l~~~g~F~~v~~~~~-~~~l~~~v~e~p~i~  117 (781)
                      -|++|.|+|+ +.++.+.|... .++..|..+=.-++.+.-++|-+.-+.++|+|... .+.|.|.|+|+-.|.
T Consensus        27 ~I~~V~I~G~~~~~~~~~I~~al~~~~~~~ni~~ld~~~i~~~L~~~pwVk~a~V~R~~P~tL~I~V~Er~PvA  100 (255)
T 2vh2_A           27 PLSKLVVTGERHYTTNDDIRQAILSLGAPGTFMTQDVNIIQQQIERLPWIQQASVRKQWPDELKIHLVEYVPFA  100 (255)
T ss_dssp             CCCEEEEESCCSSCCHHHHHHHHTTSCCSSTTTSCHHHHHHHHTSCCSSEEEEEEEEETTTEEEEEEEECCCCB
T ss_pred             CEEEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEECHHHHHHHHHCCCCEEEEEEEEECCCEEEEEEEEEEEEE
T ss_conf             30499997886018999999998622589963998799999999708985799999967991799999877668


No 14 
>2vh1_A FTSQ, cell division protein FTSQ; potra, membrane, septation, cell cycle, transmembrane, inner membrane; 2.7A {Escherichia coli}
Probab=96.11  E-value=0.046  Score=29.39  Aligned_cols=71  Identities=14%  Similarity=0.196  Sum_probs=52.1

Q ss_pred             EEEEEEECCC-CCCHHHHHH-HCCCCCCCCCCHHHHHHHHHHHH-HCCCCCEEEEEEE-CCEEEEEEEECCEEEE
Q ss_conf             8589996650-079889999-74878988268899999999999-6798003899986-9989999993653657
Q gi|254780772|r   48 VRRIEIRGAT-NVGKEVILS-RIPVVVGQSISDADLDHAVKNIY-AMGYFSNVKIKIV-DSVLIIDLIERKIINH  118 (781)
Q Consensus        48 i~~I~i~G~~-~i~~~~i~~-~~~~~~G~~~~~~~i~~~i~~l~-~~g~F~~v~~~~~-~~~l~~~v~e~p~i~~  118 (781)
                      |++|.|+||. .++.+.|.. .+++..|..+-.-++.+.-++|- +..+.++|+|... .+.|.|.|+|+-.|..
T Consensus         1 l~~i~V~Gn~~~~~~e~I~~~l~~~~~~~~~~~~d~~~l~~~le~~~p~Vk~a~V~r~~P~~l~I~V~Er~Pva~   75 (220)
T 2vh1_A            1 MSKLVLTGERHYTRNDDIRQSILALGEPGTFMTQDVNIIQTQIEQRLPWIKQVSVRKQWPDELKIHLVEYVPIAR   75 (220)
T ss_dssp             -CEEEEESCCSSCCHHHHHHHHHTTSCTTCGGGSCHHHHHHHHHHHCTTEEEEEEEEETTTEEEEEEEECCEEEE
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEECHHHHHHHHHHCCCCEEEEEEEEECCCEEEEEEEEEEEEEE
T ss_conf             958999699742899999998752057997145189999999874299377999999589808999996045899


No 15 
>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid, ATP-binding, cytoplasm, nucleotide-binding, transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A* 3a7a_A* 1x2g_A*
Probab=56.80  E-value=4.8  Score=16.14  Aligned_cols=56  Identities=11%  Similarity=0.185  Sum_probs=32.4

Q ss_pred             CCCCEEEEEEECCCCCCCEEECCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             344046655412333220110033334320033210010010000000123444566677
Q gi|254780772|r  348 FAKRIVDIEYLIDQGSPLYVKRIEIEGNDQSYDSVIRRELELSEGDPINYSMIERAKRRI  407 (781)
Q Consensus       348 ~~~~~vdi~~~I~eg~~~~i~~I~I~GN~~T~d~VIrrel~~~~Gd~~~~~~i~~s~~~L  407 (781)
                      ...+++.+.+.|..|.   |.+|.|.|-.-..+ .|..--..-.|.+|+...+.+....+
T Consensus       259 ~~~g~v~v~~~v~~G~---I~~~~i~gD~~~~~-~~~~l~~~L~G~~~~~~~i~~~l~~~  314 (337)
T 3a7r_A          259 FTWGGVELHFDVEKGH---ITRAQVFTDSLNPA-PLEALAGRLQGCLYRADMLQQECEAL  314 (337)
T ss_dssp             ETTEEEEEEEEEETTE---EEEEEEEECCSCCH-HHHHHHHHTTTCBSSHHHHHHHHHHT
T ss_pred             CCCCEEEEEEEEECCE---EEEEEEECCCCCCH-HHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf             6785499999985999---99999976778721-49999998779988999999999998


No 16 
>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} PDB: 3a7u_A
Probab=41.19  E-value=11  Score=13.83  Aligned_cols=25  Identities=12%  Similarity=0.169  Sum_probs=16.4

Q ss_pred             CCCCEEEEEEECCCCCCCEEECCCCCCC
Q ss_conf             3440466554123332201100333343
Q gi|254780772|r  348 FAKRIVDIEYLIDQGSPLYVKRIEIEGN  375 (781)
Q Consensus       348 ~~~~~vdi~~~I~eg~~~~i~~I~I~GN  375 (781)
                      ...+++++.+.|..|.   |.++.|.|.
T Consensus       265 ~~~g~i~v~l~v~~G~---I~~~~i~gd  289 (347)
T 2e5a_A          265 QSHVEIKVFIDVKNGR---IEVCNIEAP  289 (347)
T ss_dssp             -CEEEEEEEEEEETTE---EEEEEEECC
T ss_pred             CCCEEEEEEEEEECCE---EEEEEEEEC
T ss_conf             6745899999996999---999999942


No 17 
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A*
Probab=37.26  E-value=11  Score=13.82  Aligned_cols=17  Identities=18%  Similarity=0.294  Sum_probs=10.0

Q ss_pred             CHHHHHHHC-CCCCCCCC
Q ss_conf             988999974-87898826
Q gi|254780772|r   60 GKEVILSRI-PVVVGQSI   76 (781)
Q Consensus        60 ~~~~i~~~~-~~~~G~~~   76 (781)
                      +.++|...+ ..+|||.+
T Consensus        30 ~~~tiq~Ai~~a~PGDtI   47 (506)
T 1dbg_A           30 SNETLYQVVKEVKPGGLV   47 (506)
T ss_dssp             SHHHHHHHHHHCCTTCEE
T ss_pred             CHHHHHHHHHCCCCCCEE
T ss_conf             858999999708999999


No 18 
>1vqz_A Lipoate-protein ligase, putative; NP_345629.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.99A {Streptococcus pneumoniae TIGR4} SCOP: d.224.1.3 d.104.1.3
Probab=34.24  E-value=13  Score=13.23  Aligned_cols=61  Identities=18%  Similarity=0.294  Sum_probs=32.8

Q ss_pred             CCCCEEEEEEECCCCCCCEEECCCCCCCCCCCCCCCHHHC-CCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             3440466554123332201100333343200332100100-10000000123444566677651012
Q gi|254780772|r  348 FAKRIVDIEYLIDQGSPLYVKRIEIEGNDQSYDSVIRREL-ELSEGDPINYSMIERAKRRIMATGYF  413 (781)
Q Consensus       348 ~~~~~vdi~~~I~eg~~~~i~~I~I~GN~~T~d~VIrrel-~~~~Gd~~~~~~i~~s~~~L~~lg~F  413 (781)
                      ...+++++.+.|..|.   |.+|.|.|---..+. + .++ ....|-.|+...+.+....+.-..+|
T Consensus       266 ~~~G~v~v~~~v~~g~---I~~i~i~gDf~~~~~-~-~~l~~~L~G~~~~~~~i~~~l~~~~~~~~~  327 (341)
T 1vqz_A          266 FTSGKVEVFANVTESK---IQDIKIYGDFFGIED-V-AAVEDVLRGVKYEREDVLKALKTIDITRYF  327 (341)
T ss_dssp             ETTEEEEEEEEEETTE---EEEEEEEESCCCSSC-T-HHHHHHHTTCBSSHHHHHHHHTTSCGGGTS
T ss_pred             CCCCEEEEEEEEECCE---EEEEEEECCCCCHHH-H-HHHHHHHCCCCCCHHHHHHHHHHCCHHHHH
T ss_conf             2685699999994799---999999877887345-9-999998679988899999999734477776


No 19 
>1p4t_A Outer membrane protein NSPA; beta barrel; HET: CXE; 2.55A {Neisseria meningitidis} SCOP: f.4.1.1
Probab=31.29  E-value=16  Score=12.82  Aligned_cols=26  Identities=8%  Similarity=0.045  Sum_probs=14.5

Q ss_pred             CCEEEEEEEEEEEE-CCCCCEEEEEEE
Q ss_conf             64247999999975-570015899887
Q gi|254780772|r  735 SFWRVSTGVEIMWN-SPLGMMGVYYGI  760 (781)
Q Consensus       735 ~~~r~s~G~Glr~~-tP~Gpirld~a~  760 (781)
                      ..+...+|+|+.|. +|--.++++|-|
T Consensus       104 ~~~~~~~g~G~~y~~~~~~~~~~ey~y  130 (155)
T 1p4t_A          104 TSIGLGVLTGVSYAVTPNVDLDAGYRY  130 (155)
T ss_dssp             CEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred             CEEEEEEEEEEEEEECCCEEEEEEEEE
T ss_conf             506047511499971789999999999


No 20 
>2k4v_A Uncharacterized protein PA1076; structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa}
Probab=30.58  E-value=9  Score=14.36  Aligned_cols=20  Identities=35%  Similarity=0.642  Sum_probs=15.7

Q ss_pred             CHHHCCCCCCCHHHHHHHHH
Q ss_conf             00100100000001234445
Q gi|254780772|r  383 IRRELELSEGDPINYSMIER  402 (781)
Q Consensus       383 Irrel~~~~Gd~~~~~~i~~  402 (781)
                      ||.+|.++|||+.+...+++
T Consensus       102 IR~KL~~kpGdpV~~ehle~  121 (125)
T 2k4v_A          102 IRAKLHAHPGEPVDLERIIR  121 (125)
T ss_dssp             HHHHHHSSCCCCCTHHHHHC
T ss_pred             HHHHCCCCCCCCCCHHHHHC
T ss_conf             99980899999878756430


No 21 
>1orm_A Outer membrane protein X; OMPX, trosy, DHPC, detergents, lipids, micelles; NMR {Escherichia coli} SCOP: f.4.1.1 PDB: 1q9f_A 1q9g_A 1qj8_A* 1qj9_A
Probab=30.48  E-value=3.6  Score=16.95  Aligned_cols=18  Identities=17%  Similarity=0.359  Sum_probs=7.1

Q ss_pred             EEEEEEECCCCEEEEECC
Q ss_conf             245542025430235404
Q gi|254780772|r  526 AVRMIVPITESISTSFKY  543 (781)
Q Consensus       526 ~~~~~~~~~~~~~~~~~~  543 (781)
                      ++++.+.+++++.+.+.|
T Consensus       110 G~Gvey~lt~n~~~~~eY  127 (148)
T 1orm_A          110 GAGLQFNPMENVALDFSY  127 (148)
T ss_dssp             CCCCCCCCSSSCBCCCCC
T ss_pred             ECEEEEEECCCEEEEEEE
T ss_conf             130899865887999999


No 22 
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=29.51  E-value=17  Score=12.62  Aligned_cols=25  Identities=8%  Similarity=0.267  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHCCCCCEEEEEEEC
Q ss_conf             9999999999967980038999869
Q gi|254780772|r   79 ADLDHAVKNIYAMGYFSNVKIKIVD  103 (781)
Q Consensus        79 ~~i~~~i~~l~~~g~F~~v~~~~~~  103 (781)
                      ..+.+++++|+..+.|+||.+..++
T Consensus        19 ~~l~~~l~~l~~~~~~sDv~i~~~~   43 (172)
T 3htm_A           19 CRLADELGGLWENSRFTDCCLCVAG   43 (172)
T ss_dssp             CCHHHHHHHHHHHTCSCCEEEEETT
T ss_pred             HHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf             8899999999848998018999999


No 23 
>3h0d_A CTSR; protein DNA complex, winged HTH domain, 4-helix bundle, DNA tandem repeat, transcription/DNA complex; HET: DNA; 2.40A {Bacillus stearothermophilus}
Probab=23.98  E-value=21  Score=11.98  Aligned_cols=10  Identities=40%  Similarity=0.780  Sum_probs=4.4

Q ss_pred             HHHHHHHHHH
Q ss_conf             8888754232
Q gi|254780772|r  245 RAFYHDRGYA  254 (781)
Q Consensus       245 ~~~Y~~~GY~  254 (781)
                      +.|=..+||+
T Consensus        47 TRFT~e~GY~   56 (155)
T 3h0d_A           47 TRFTLERGYI   56 (155)
T ss_dssp             HHSSGGGTEE
T ss_pred             CCCCCCCCEE
T ss_conf             6646988848


No 24 
>2sak_A Staphylokinase; plasminogen activation, fibrinolysis, hydrolase, plasminogen activator; 1.80A {Staphylococcus aureus} SCOP: d.15.5.1 PDB: 1bui_C*
Probab=20.99  E-value=22  Score=11.78  Aligned_cols=44  Identities=23%  Similarity=0.294  Sum_probs=25.2

Q ss_pred             CCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHH-HHHHH--HCCCCCCC
Q ss_conf             343200332100100100000001234445666-77651--01234453
Q gi|254780772|r  373 EGNDQSYDSVIRRELELSEGDPINYSMIERAKR-RIMAT--GYFSEVNI  418 (781)
Q Consensus       373 ~GN~~T~d~VIrrel~~~~Gd~~~~~~i~~s~~-~L~~l--g~F~~V~i  418 (781)
                      .||....++.+  ++++++|+.++...|.+-.+ .|...  +-|+-|.+
T Consensus        20 ~g~~il~P~Y~--ei~l~~G~tl~k~eil~~Vq~~idas~~~~fkvV~~   66 (121)
T 2sak_A           20 KGNELLSPHYV--EFPIKPGTTLTKEKIEYYVEWALDATAYKEFRVVEL   66 (121)
T ss_dssp             TCCEEEEEEEE--EEECCTTCEECHHHHHHHHHHHHTTSTTTTCEEEEE
T ss_pred             CCCEEECCCCE--EEECCCCCEECHHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf             99889555207--886476846369999999998743310463578851


No 25 
>1c76_A Staphylokinase, SAK; beta-grAsp family, hydrolase; 2.25A {Staphylococcus aureus} SCOP: d.15.5.1 PDB: 1c77_A 1c78_A 1c79_A 1ssn_A
Probab=20.62  E-value=24  Score=11.60  Aligned_cols=44  Identities=23%  Similarity=0.294  Sum_probs=25.7

Q ss_pred             CCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHH-HHHHH--HCCCCCCC
Q ss_conf             343200332100100100000001234445666-77651--01234453
Q gi|254780772|r  373 EGNDQSYDSVIRRELELSEGDPINYSMIERAKR-RIMAT--GYFSEVNI  418 (781)
Q Consensus       373 ~GN~~T~d~VIrrel~~~~Gd~~~~~~i~~s~~-~L~~l--g~F~~V~i  418 (781)
                      .||....++.+  ++++.+|+.++...|.+-.+ .|...  +-|+-|.+
T Consensus        35 ~g~~il~P~Y~--ei~L~~G~tltkeeil~~Vq~~idas~~~~fkvV~~   81 (136)
T 1c76_A           35 KGNELLSPHYV--EFPIKPGTTLTKEKIEYYVEWALDATAYKEFRVVEL   81 (136)
T ss_dssp             TCCEEECCCCE--EEECCTTCEECHHHHHHHHHHHHTTSTTTTEEEEEE
T ss_pred             CCCEEECCCCE--EEECCCCCEECHHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf             99889545207--886476846269999999998643310463478851


No 26 
>2rdq_A 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II)/alpha-ketoglutarate dependent...; double stranded barrel helix, dioxygenase; HET: AKG; 1.31A {Streptomyces avermitilis} PDB: 2rdn_A* 2rdr_A* 2rds_A*
Probab=20.48  E-value=24  Score=11.53  Aligned_cols=28  Identities=25%  Similarity=0.419  Sum_probs=19.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             6643102333345788888875423221
Q gi|254780772|r  229 TDVYSKERMSFDEEAIRAFYHDRGYAAV  256 (781)
Q Consensus       229 ~~~~~~~~l~~D~~~l~~~Y~~~GY~d~  256 (781)
                      .+.++-..+..|.+.|+++|+++||+=+
T Consensus         9 ~~~~d~~~~~~d~~~l~~~f~~~Gyvvi   36 (288)
T 2rdq_A            9 GDYTDCTPLLGDRAALDSFYEEHGYLFL   36 (288)
T ss_dssp             BCCCCCGGGTTCHHHHHHHHHHHSEEEE
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHCCEEEC
T ss_conf             6744478889999999999984998983


No 27 
>1txl_A Metal-binding protein YODA; E.coli, structural genomics, NEW fold, PSI, protein structure initiative; 1.70A {Escherichia coli} SCOP: b.60.1.4 PDB: 1s7d_A 1oej_A 1oee_A 1oek_A
Probab=20.04  E-value=25  Score=11.47  Aligned_cols=11  Identities=45%  Similarity=1.217  Sum_probs=4.3

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             788888875423
Q gi|254780772|r  242 EAIRAFYHDRGY  253 (781)
Q Consensus       242 ~~l~~~Y~~~GY  253 (781)
                      +..+.+|.. ||
T Consensus        90 eeyK~yY~~-gY  100 (215)
T 1txl_A           90 AEIKDYYHK-GY  100 (215)
T ss_dssp             HHHHHHHHH-HH
T ss_pred             HHHHHHHHC-CC
T ss_conf             999999862-34


Done!