Query gi|254780772|ref|YP_003065185.1| surface antigen (D15) [Candidatus Liberibacter asiaticus str. psy62] Match_columns 781 No_of_seqs 308 out of 3546 Neff 8.7 Searched_HMMs 23785 Date Mon May 30 13:51:33 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780772.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3efc_A OMP85, outer membrane p 100.0 0 0 586.2 25.0 387 41-428 2-393 (395) 2 2qdf_A OMP85, outer membrane p 100.0 0 0 470.5 27.1 329 40-369 2-335 (335) 3 2qdz_A TPSB transporter FHAC; 100.0 0 0 412.7 26.6 476 267-781 43-554 (554) 4 2qdf_A OMP85, outer membrane p 100.0 9.4E-39 4E-43 269.5 18.6 312 111-443 5-332 (335) 5 3efc_A OMP85, outer membrane p 100.0 9E-36 3.8E-40 250.0 18.6 312 110-441 3-329 (395) 6 3mc9_A ALR2269 protein; polype 100.0 2.8E-35 1.2E-39 246.7 17.1 234 45-440 61-308 (316) 7 2x8x_X TLR1789 protein, OMP85; 100.0 8.6E-35 3.6E-39 243.6 9.2 232 190-441 1-235 (235) 8 2x8x_X TLR1789 protein, OMP85; 100.0 8.8E-29 3.7E-33 204.3 22.4 223 45-281 4-234 (235) 9 3og5_A Outer membrane protein 100.0 2E-31 8.6E-36 221.5 4.9 163 279-442 2-164 (166) 10 3og5_A Outer membrane protein 99.9 1.4E-21 6.1E-26 157.0 14.8 158 111-281 3-162 (166) 11 3mc9_A ALR2269 protein; polype 99.7 2.6E-15 1.1E-19 116.1 14.4 152 192-363 60-220 (316) 12 2qdz_A TPSB transporter FHAC; 99.5 1.1E-13 4.5E-18 105.5 10.0 167 180-368 45-214 (554) 13 2vh2_A FTSQ, cell division pro 96.4 0.0094 4E-07 33.9 6.9 71 47-117 27-100 (255) 14 2vh1_A FTSQ, cell division pro 96.1 0.046 1.9E-06 29.4 9.1 71 48-118 1-75 (220) 15 3a7r_A Lipoate-protein ligase 56.8 4.8 0.0002 16.1 2.1 56 348-407 259-314 (337) 16 2e5a_A Lipoyltransferase 1; li 41.2 11 0.00046 13.8 2.5 25 348-375 265-289 (347) 17 1dbg_A Chondroitinase B; beta 37.3 11 0.00046 13.8 1.4 17 60-76 30-47 (506) 18 1vqz_A Lipoate-protein ligase, 34.2 13 0.00056 13.2 1.5 61 348-413 266-327 (341) 19 1p4t_A Outer membrane protein 31.3 16 0.00065 12.8 9.8 26 735-760 104-130 (155) 20 2k4v_A Uncharacterized protein 30.6 9 0.00038 14.4 0.1 20 383-402 102-121 (125) 21 1orm_A Outer membrane protein 30.5 3.6 0.00015 16.9 -1.9 18 526-543 110-127 (148) 22 3htm_A Speckle-type POZ protei 29.5 17 0.0007 12.6 1.5 25 79-103 19-43 (172) 23 3h0d_A CTSR; protein DNA compl 24.0 21 0.00087 12.0 4.6 10 245-254 47-56 (155) 24 2sak_A Staphylokinase; plasmin 21.0 22 0.00094 11.8 0.7 44 373-418 20-66 (121) 25 1c76_A Staphylokinase, SAK; be 20.6 24 0.001 11.6 0.7 44 373-418 35-81 (136) 26 2rdq_A 1-deoxypentalenic acid 20.5 24 0.001 11.5 2.1 28 229-256 9-36 (288) 27 1txl_A Metal-binding protein Y 20.0 25 0.001 11.5 2.2 11 242-253 90-100 (215) No 1 >3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane; 3.30A {Escherichia coli} Probab=100.00 E-value=0 Score=586.17 Aligned_cols=387 Identities=26% Similarity=0.461 Sum_probs=367.0 Q ss_pred HCCCCEEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEEEECCEEEEEE Q ss_conf 11465268589996650079889999748789882688999999999996798003899986998999999365365799 Q gi|254780772|r 41 YGSNTSIVRRIEIRGATNVGKEVILSRIPVVVGQSISDADLDHAVKNIYAMGYFSNVKIKIVDSVLIIDLIERKIINHLF 120 (781) Q Consensus 41 ~~~~~~~i~~I~i~G~~~i~~~~i~~~~~~~~G~~~~~~~i~~~i~~l~~~g~F~~v~~~~~~~~l~~~v~e~p~i~~i~ 120 (781) +.|++++|++|+|+||+++++++|++++++++|++++++.+++++++||+||+|+||++..++..|+|.|+|+|+|.+|. T Consensus 2 a~a~~~~I~~I~i~G~~~i~~~~i~~~~~~~~G~~~~~~~i~~~ik~L~~tg~F~~V~i~~~g~~l~i~V~E~p~i~~i~ 81 (395) T 3efc_A 2 AMAEGFVVKDIHFEGLQRVAVGAALLSMPVRTGDTVNDEDISNTIRALFATGNFEDVRVLRDGDTLLVQVKERPTIASIT 81 (395) T ss_dssp ----CCCEEEEECSCCSSSCHHHHHHTCSCCTTSCCCTHHHHHHHHHHHHHCCEEEEEEECCSSEEEEEEEECCEEEEEE T ss_pred CCCCCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCEEEEEEEECCEEEEEE T ss_conf 87777189789999984179999997468999993798999999999996798026999962999999999446160379 Q ss_pred EECCCCCCHHHHHHH---HHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEEEEEECCCCEEEE Q ss_conf 956543698899887---30057863799999999999999999729700179987643389842588986036632467 Q gi|254780772|r 121 FSGNNNLKDDQLKMI---VRSRSAAAYDEDTVNADVHNIKQAYASIGYLNVMVKVQHHSISPTTLNITYVIEEGVKAKIN 197 (781) Q Consensus 121 ~~Gn~~~~~~~l~~~---~~~~~g~~~~~~~~~~~~~~i~~~y~~~Gy~~a~V~~~~~~~~~~~v~i~~~I~EG~~~~I~ 197 (781) |+||+.++++.|++. ++++.|+++++..+++++++|+++|.++||++|.|.++.++.++++++|+|.|+||++++|. T Consensus 82 ~~Gn~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~~Gy~~~~v~~~~~~~~~~~v~v~~~I~Eg~~~kI~ 161 (395) T 3efc_A 82 FSGNKSVKDDMLKQNLEASGVRVGESLDRTTIADIEKGLEDFYYSVGKYSASVKAVVTPLPRNRVDLKLVFQEGVSAEIQ 161 (395) T ss_dssp EESCTTSCHHHHHHHHHHHTCCSSSCCCGGGHHHHHHHHHHHHHTTTCCSCEEEEECCBCTTSEEEEEEEEECCCCCCCC T ss_pred EECCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCCCE T ss_conf 99762134445433210134344441235668999999999998708632210237752467505544432005542213 Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCEEE Q ss_conf 78750443110122221110012211244-56664310233334578888887542322100123-10124555541012 Q gi|254780772|r 198 SIRFVGNKNYSHARLERVISIRTSGYFSF-GKTDVYSKERMSFDEEAIRAFYHDRGYAAVKVSSQ-VLFDKQKSGYVLIF 275 (781) Q Consensus 198 ~I~f~Gn~~f~~~~L~~~~~~k~~~~~~~-~~~~~~~~~~l~~D~~~l~~~Y~~~GY~d~~V~~~-~~~~~~~~~~~i~~ 275 (781) +|.|+||+.|++++|++.|.+++.+||++ ..++.|+++.++.|+++|++||+++||+|++|..+ +...+++..+.|+| T Consensus 162 ~I~f~Gn~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~l~~~Y~~~Gy~d~~v~~~~~~~~~~~~~v~i~i 241 (395) T 3efc_A 162 QINIVGNHAFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYVTV 241 (395) T ss_dssp CCEEESCCSSCTTTTGGGCCCCSSCCSCCSCTTTHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCCEECTTSCSEECEE T ss_pred EEEEECCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCHHCCCHHHHHHHHHHCCEEEEEECCCEEEECCCCCCCEEEE T ss_conf 78983353331155554443011100111013433222000031888888985567589997021689815777515753 Q ss_pred EECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEECCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE Q ss_conf 20222210000012333444557677775321169962112100000000000023445642011233223434404665 Q gi|254780772|r 276 QIDEGEIYTVGNISIQSTLQEIQKKTLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPFVRVKTRINRDFAKRIVDI 355 (781) Q Consensus 276 ~I~EG~~y~i~~i~i~g~~~~~~~~~l~~~~~~k~G~~~~~~~~~~~~~~i~~~y~~~GY~fa~v~~~~~~d~~~~~vdi 355 (781) .|+||+||++++|+|.|+. ..+.+++.+.+.+++|++|+...++++.++|.+.|.++||++++|.+.+..+.++++|+| T Consensus 242 ~i~EG~~y~v~~i~i~Gn~-~~~~~~l~~~l~~~~g~~f~~~~~~~~~~~i~~~y~~~GY~~a~v~~~~~~~~~~~~v~l 320 (395) T 3efc_A 242 NITEGDQYKLSGVEVSGNL-AGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPEINDADKTVKL 320 (395) T ss_dssp EEECCCCCEEEEECCBSCC-TTCHHHHHHTCCCCSSCBCCHHHHHHHHHHHHHHHHHTTCSSCEEEEEEEEETTTTEEEE T ss_pred ECCCCEEEEEEEEEEECCC-HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCEEEE T ss_conf 0244404788776650572-000134555543204632340121002457899997517532124663045056738999 Q ss_pred EEECCCCCCCEEECCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC Q ss_conf 5412333220110033334320033210010010000000123444566677651012344533254435654 Q gi|254780772|r 356 EYLIDQGSPLYVKRIEIEGNDQSYDSVIRRELELSEGDPINYSMIERAKRRIMATGYFSEVNISQLPANDVSD 428 (781) Q Consensus 356 ~~~I~eg~~~~i~~I~I~GN~~T~d~VIrrel~~~~Gd~~~~~~i~~s~~~L~~lg~F~~V~i~~~~~~~~~~ 428 (781) .|.|+||+++||++|+|.||++|+|+||||+|.++|||+||+.++++|++||++||||++|++.+.|+++.+| T Consensus 321 ~~~I~eg~~~~v~~I~I~GN~~T~d~vIrrel~~~~Gd~~~~~~l~~s~~~L~~lg~F~~V~i~~~~v~~~~D 393 (395) T 3efc_A 321 RVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVDQGKERLNRLGFFETVDTDTQRVPGSPD 393 (395) T ss_dssp EEEEECCCCCCC------------------------------------------------------------- T ss_pred EEEECCCCCEEEEEEEEECCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC T ss_conf 9998448818999999988873655641320036998647999999999999846997600546403888989 No 2 >2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A Probab=100.00 E-value=0 Score=470.52 Aligned_cols=329 Identities=25% Similarity=0.447 Sum_probs=310.9 Q ss_pred HHCCCCEEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEEEECCEEEEE Q ss_conf 51146526858999665007988999974878988268899999999999679800389998699899999936536579 Q gi|254780772|r 40 VYGSNTSIVRRIEIRGATNVGKEVILSRIPVVVGQSISDADLDHAVKNIYAMGYFSNVKIKIVDSVLIIDLIERKIINHL 119 (781) Q Consensus 40 ~~~~~~~~i~~I~i~G~~~i~~~~i~~~~~~~~G~~~~~~~i~~~i~~l~~~g~F~~v~~~~~~~~l~~~v~e~p~i~~i 119 (781) .++|++++|++|+|+||+++++++|++.+++++|++++++.+++++++||+||+|+||++..++..|+++|+|+|.|.+| T Consensus 2 ~~~a~~~~I~~I~i~G~~~v~~~~i~~~~~~~~G~~~~~~~i~~~ik~L~~tg~F~dV~v~~~g~~l~i~v~e~p~i~~i 81 (335) T 2qdf_A 2 SHMAEGFVVKDIHFEGLQRVAVGAALLSMPVRTGDTVNDEDISNTIRALFATGNFEDVRVLRDGDTLLVQVKERPTIASI 81 (335) T ss_dssp --CCCCEECCEEEEESCSSSCHHHHHHTSSCCTTCEECHHHHHHHHHHHHTTSCEEEEEEEEETTEEEEEEEECCEEEEE T ss_pred CCCCCCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEEEECCCCCCC T ss_conf 76567748979999998327999999746899999279999999999999769942489997288899988864531111 Q ss_pred EEECCCCCCHHHHHHHH---HHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEEEEEECCCCEEE Q ss_conf 99565436988998873---005786379999999999999999972970017998764338984258898603663246 Q gi|254780772|r 120 FFSGNNNLKDDQLKMIV---RSRSAAAYDEDTVNADVHNIKQAYASIGYLNVMVKVQHHSISPTTLNITYVIEEGVKAKI 196 (781) Q Consensus 120 ~~~Gn~~~~~~~l~~~~---~~~~g~~~~~~~~~~~~~~i~~~y~~~Gy~~a~V~~~~~~~~~~~v~i~~~I~EG~~~~I 196 (781) .|+||+.++++.|++.+ +++.|.+|++..+++++++|+++|+++||++|.|+++.++.+.+++.|+|.|+||++++| T Consensus 82 ~~~Gn~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~Y~~~Gy~~a~V~~~~~~~~~~~~~v~~~I~EG~~~~I 161 (335) T 2qdf_A 82 TFSGNKSVKDDMLKQNLEASGVRVGESLDRTTIADIEKGLEDFYYSVGKYSASVKAVVTPLPRNRVDLKLVFQEGVSAEI 161 (335) T ss_dssp EEESCCSSCHHHHHHHHHTTTCCTTSBCCTTSHHHHHHHHHHHGGGGTBSSCEEEEEEEEETTTEEEEEEEEECCCBCEE T ss_pred EEECCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEEEEEEECCCCCCCEEEEEECCCCEEE T ss_conf 26644423335554544320223456554345688999999999863725678877777657776313688512654179 Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCEE Q ss_conf 77875044311012222111001221124-456664310233334578888887542322100123-1012455554101 Q gi|254780772|r 197 NSIRFVGNKNYSHARLERVISIRTSGYFS-FGKTDVYSKERMSFDEEAIRAFYHDRGYAAVKVSSQ-VLFDKQKSGYVLI 274 (781) Q Consensus 197 ~~I~f~Gn~~f~~~~L~~~~~~k~~~~~~-~~~~~~~~~~~l~~D~~~l~~~Y~~~GY~d~~V~~~-~~~~~~~~~~~i~ 274 (781) ++|.|+||+.|++++|++.|.+++..||+ +..++.|+++.++.|+++|++||+++||+|++|... +...+++..+.|+ T Consensus 162 ~~I~f~Gn~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~l~~~y~~~Gy~d~~v~~~~~~~~~d~~~~~i~ 241 (335) T 2qdf_A 162 QQINIVGNHAFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYVT 241 (335) T ss_dssp EEEEEESCCSSCHHHHHGGGSCC--------------CCSCHHHHHHHHHHHHHTTTCTTCEEEEEEEEECTTSSEEEEE T ss_pred EEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCEEEE T ss_conf 99763166543045655433310122122223454200567777787766777430101110133168885066440588 Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEECCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEE Q ss_conf 22022221000001233344455767777532116996211210000000000002344564201123322343440466 Q gi|254780772|r 275 FQIDEGEIYTVGNISIQSTLQEIQKKTLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPFVRVKTRINRDFAKRIVD 354 (781) Q Consensus 275 ~~I~EG~~y~i~~i~i~g~~~~~~~~~l~~~~~~k~G~~~~~~~~~~~~~~i~~~y~~~GY~fa~v~~~~~~d~~~~~vd 354 (781) +.|+||+||++++|.|.||. .++.++|++.+++++|++||...++++.++|.+.|.++||+|++|.|.++.+.++++|+ T Consensus 242 ~~i~EG~~y~v~~i~i~Gn~-~~~~~~l~~~~~~k~G~~y~~~~i~~~~~~i~~~y~~~GY~~~~V~~~~~~~~~~~~vd 320 (335) T 2qdf_A 242 VNITEGDQYKLSGVEVSGNL-AGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPEINDADKTVK 320 (335) T ss_dssp EEEECCCCCEEEEEEEEEEC-TTCHHHHHHHTCCCTTEECCHHHHHHHHHHHHHHHHTTTBSSCEEEEEEEEETTTTEEE T ss_pred EEECCCCEEEEEEEEEECCC-CCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEE T ss_conf 73136845998511897244-33146799874578999509999999999999999867984148997778848899898 Q ss_pred EEEECCCCCCCEEEC Q ss_conf 554123332201100 Q gi|254780772|r 355 IEYLIDQGSPLYVKR 369 (781) Q Consensus 355 i~~~I~eg~~~~i~~ 369 (781) |+|.|+||+|+||++ T Consensus 321 v~~~I~eg~~~~V~r 335 (335) T 2qdf_A 321 LRVNVDAGNRFYVRK 335 (335) T ss_dssp EEEEEECCCBCCCCC T ss_pred EEEEEEECCCEEECC T ss_conf 999997289558549 No 3 >2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} Probab=100.00 E-value=0 Score=412.68 Aligned_cols=476 Identities=13% Similarity=0.124 Sum_probs=334.1 Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEECCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCC Q ss_conf 55554101220222210000012333444557677775321169962112100000000000023445642011233223 Q gi|254780772|r 267 QKSGYVLIFQIDEGEIYTVGNISIQSTLQEIQKKTLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPFVRVKTRINR 346 (781) Q Consensus 267 ~~~~~~i~~~I~EG~~y~i~~i~i~g~~~~~~~~~l~~~~~~k~G~~~~~~~~~~~~~~i~~~y~~~GY~fa~v~~~~~~ 346 (781) +.....+...+.||+++.|+.|.|+|+. ..+.++|.+++....|++++...+++.+++|++.|.++||++++|.. +.+ T Consensus 43 ~~~~~~~~~~~~~g~~~~v~~i~~~g~~-~~~~~~l~~~~~~~~G~~~~~~~l~~~~~~i~~~y~~~GY~~a~v~~-~~q 120 (554) T 2qdz_A 43 EAAAPARKPDATSGHTVTVHAVDLDFGV-EGRLFDPAPLVQDYLNRPLDNEQLFLLVKALSAALYDRGYATSIVTF-VPP 120 (554) T ss_dssp ----------CBCCCSSSSCCEEEECCS-SSCCCSCSTTSTTSSSSCBCSTTHHHHHHHHHHHHHHTTCTTCEEEE-EEE T ss_pred CCCCCCCCCCCCCCCEEEEEEEEEECCC-CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEE-CCC T ss_conf 6677754466888863899999984886-58989999877862598469999999999999999978984689871-243 Q ss_pred CCCCCEEEEEEECCCCCCCEEECCCCCCCCCCCCC---CCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC Q ss_conf 43440466554123332201100333343200332---100100100000001234445666776510123445332544 Q gi|254780772|r 347 DFAKRIVDIEYLIDQGSPLYVKRIEIEGNDQSYDS---VIRRELELSEGDPINYSMIERAKRRIMATGYFSEVNISQLPA 423 (781) Q Consensus 347 d~~~~~vdi~~~I~eg~~~~i~~I~I~GN~~T~d~---VIrrel~~~~Gd~~~~~~i~~s~~~L~~lg~F~~V~i~~~~~ 423 (781) +.++++ |++.|.|| +|++|.|.||..+.+. .+++.+++++|++|+..++++++++|.++++|..|.+.+. T Consensus 121 ~~~~g~--l~i~v~eG---~i~~i~i~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~le~~~~~l~~~g~~~~v~l~p~-- 193 (554) T 2qdz_A 121 GVVDGV--LKLKVEWG---RIKGWLIDGKPLEGTRDRMMVFSAMPGWQDKVLNVFDIDQAIYNINNGGKTGNITIVPA-- 193 (554) T ss_dssp EEETTE--EEEEEECC---EEEEEEETTEECCSHHHHHHHHHHSTTCTTCBCCHHHHHHHHHHHCSSSEEEEEEEEEC-- T ss_pred CCCCCE--EEEEEEEC---EEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEC-- T ss_conf 476867--99999985---15568983255567136666776476777884678899999998750586225898607-- Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEC------CCCEEEEEE Q ss_conf 3565431023322112211111111-----12233211000001112333234422003787411------221111345 Q gi|254780772|r 424 NDVSDYVILRVSVKQLSAGSVGIAT-----NYEVDKGMGVEGHIDDNNFFGQGYRARLAAGFGRH------AVQNYTFSV 492 (781) Q Consensus 424 ~~~~~~vdl~i~v~E~~tg~~~~g~-----gys~~~g~~~~~~~~~~Nl~G~G~~l~l~~~~~~~------~~~~~~~s~ 492 (781) ..++.+++.+.|+|+++..+++++ |+.+..+..+.+++.++|++|.|+++++++..+.. ..+.++++| T Consensus 194 -~~~g~~~~~v~v~~~~~~~~~~~~~~~~~G~~~~g~~~~~~~~~~~Nl~G~gd~l~~~~~~s~~~~~~~~~~~~~~~~y 272 (554) T 2qdz_A 194 -DEYGYSYLDLQLQRRALPRVSLGMDNSGPGTPENGRYKYNASVTANDLLGLNDTLGLYIGNRYYRDAGHDAERNYDLMY 272 (554) T ss_dssp -SSTTEEEEEEEEEECCSCEEEEEEEECSCSSSCSSCEEEEEEEEEECSSSSSCEEEEEEEEECCSCCSSCEEEEEEEEE T ss_pred -CCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEE T ss_conf -8898522678988735553210212457875544358999999965777879779999874233355655413467764 Q ss_pred EECCCCCCCCCCCCCC--CCCCC----CCCCCCCCCCCCEEEEEEECCCCEE--EEECCCEEEEEEECCCCCCCCCHHHH Q ss_conf 4112357775431001--11133----3333432333202455420254302--35404125776401467544201112 Q gi|254780772|r 493 EDPYFLGSPISAGFDL--QKTHL----EDGSLDINDESAAVRMIVPITESIS--TSFKYDLRFLQYGAISEKEKIPSIYT 564 (781) Q Consensus 493 ~~P~~~~~~~s~~~~~--~~~~~----~~~~y~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (781) ..|+... .+++..+. +.... ....+...+...++++.+++.+... ..+.+.+.+.+.......... T Consensus 273 ~~P~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~----- 346 (554) T 2qdz_A 273 SVPLGRT-RLDLQTGYSTYRNLLKTRYGQYQSAGNSRSFGLKATRLLYRDTRSQFSVYGGLKLRQNKNYLAGTRL----- 346 (554) T ss_dssp EEEETTE-EEEEEEEEEEEECCCSSSSCCCCCEEEEEEEEEEEEEEEECCSSEEEEEEEEEEEEEEEEECCTTSC----- T ss_pred ECCCCCC-CCEEEEEEEEEEEECCCCCCCEEECCCCEEECCEEEEEEEEECCCEEEEEEEEEEEECCEEECCCCC----- T ss_conf 0234544-4135542223322115664201203421020542565467501113667889998642213056113----- Q ss_pred HHHCCCCCEEEEEEEEECCCC------CCCCCCCCCCEEEEEEECC--CCCCCCCEEEEEEEEEEEEEEECC-CEEEEEE Q ss_conf 210158502467884321554------2011002465156542024--565554203666630047999358-8099999 Q gi|254780772|r 565 TLIEHGKFSSHSISQSIIYNT------LDNPIVPRKGMLISSSYDY--AGFGGDSQYHRIGSRASYFYLLSD-DSDIVGS 635 (781) Q Consensus 565 ~~~~~~~~~~~~i~~~l~~dt------rD~~~~Pt~G~~~~~~~~~--a~~g~d~~f~k~~~~~~~y~~l~~-~~~l~~~ 635 (781) .........+..+++++. .+..+.++.|......... ...+++.+|.|+.+++.++.++.. ...+.+. T Consensus 347 ---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 423 (554) T 2qdz_A 347 ---DVSSKHYSDVTVGMQYSTQRGANAYFGDLSFTRGVGVNNGKYAAYDERGPQGNVSRFNGSLAWTRYMALAGQPIQWA 423 (554) T ss_dssp ---CCEEEEEEEEEEEEEEEEECSSEEEEEEEEEEECCCC--------------CCCEEEEEEEEEEEEEEETTEEEEEE T ss_pred ---CCCCCCCEEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCEEE T ss_conf ---44431110588863168884785250343312355544554322235688774599999988999862057541231 Q ss_pred EEEEEEEEECCCCCCCCHHEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCC--CCCCCEEEEEEE Q ss_conf 999789851699741230127507897140212686155037997222147899999999614565--654537999999 Q gi|254780772|r 636 LRFGYGCVIPSNKNLQLFDQFSVSSNYYLRGFAYKGIGPRVDKKYAIGGKIYSSASAAVSFPMPLV--PERAGLRGAFFV 713 (781) Q Consensus 636 ~~~g~~~~~~~~~~lp~~erF~lGG~~svRGy~~~~iGP~~~~~~~~GG~~~~~~s~E~r~pl~~~--~~~~~l~~~~F~ 713 (781) ..++ ..+ +++.+|++|+|++||.++||||+.+++ ++|+..+.+++|+++|++.. .....+.+.+|+ T Consensus 424 ~~~~--~q~-s~~~lp~~e~f~lGG~~sVRGy~~~~~---------l~Gd~g~~~~~El~~~~~~~~~~~~~~l~~~~F~ 491 (554) T 2qdz_A 424 SQLG--FQY-SRQQLLNSYQITVGDEYTVRGYNLRTS---------QSGDSGVYLSNTLTVPVQFSLLGKQASVAPFVGA 491 (554) T ss_dssp EEEE--EEE-CSSCSSSSEECCSCCCCCCTTCCCCCS---------CCSSCSSCCEESEEEEEEEEEEECCSSCEEEEEE T ss_pred EEEE--EEE-CCCCCCCCCEEEECCCCCCCCCCCCCC---------CCCCCEEEEEEEEEEECCCCCCCCCCEEEEEEEE T ss_conf 0132--220-688777554696089982726378985---------3523369999999998655445666248999999 Q ss_pred EEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCCC---EEEEEEEEEEECC Q ss_conf 7677415666677544456766424799999997557001589988722677876---0258999641059 Q gi|254780772|r 714 DSATLYANHVALGADKLEGNDSFWRVSTGVEIMWNSPLGMMGVYYGIPLRHREGD---KIQQFGFRIGNRM 781 (781) Q Consensus 714 D~G~v~~~~~~~~~~~~~~~~~~~r~s~G~Glr~~tP~Gpirld~a~pl~~~~~D---~~~~f~FsiG~~f 781 (781) |+|+||++..+... ...+|+|+|+||.+|+||++||||+||++.+++ ...+|||++|..| T Consensus 492 D~G~v~~~~~~~~~--------~~l~g~G~Glr~~~p~g~l~~d~a~pl~~~~~~~~~~~~~~yfsig~~F 554 (554) T 2qdz_A 492 DVGALKSNHPDART--------IRMAGLAAGVRFDLPYARMSFTYSKPVGAQPGGAPRAPVWLYINAGLSF 554 (554) T ss_dssp EEEEEECSSSSCCE--------EEEEEEEEEEEECCSSEEEEEEEEEECSCSCSSSCCCCSEEEEEEEEEC T ss_pred EEEEECCCCCCCCC--------CEEEEEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEC T ss_conf 98995257888888--------7799999999998288799999999876898887578679999998389 No 4 >2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A Probab=100.00 E-value=9.4e-39 Score=269.49 Aligned_cols=312 Identities=18% Similarity=0.266 Sum_probs=255.9 Q ss_pred EECCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCC-EEEEEEEEEECCCCCEEEEEEEE Q ss_conf 93653657999565436988998873005786379999999999999999972970-01799876433898425889860 Q gi|254780772|r 111 IERKIINHLFFSGNNNLKDDQLKMIVRSRSAAAYDEDTVNADVHNIKQAYASIGYL-NVMVKVQHHSISPTTLNITYVIE 189 (781) Q Consensus 111 ~e~p~i~~i~~~Gn~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~i~~~y~~~Gy~-~a~V~~~~~~~~~~~v~i~~~I~ 189 (781) -|..+|.+|.|+||+.++++.+...+++++|+++++..+++++++| |. .||| +++|.. . + ..|++.|. T Consensus 5 a~~~~I~~I~i~G~~~v~~~~i~~~~~~~~G~~~~~~~i~~~ik~L---~~-tg~F~dV~v~~--~----g-~~l~i~v~ 73 (335) T 2qdf_A 5 AEGFVVKDIHFEGLQRVAVGAALLSMPVRTGDTVNDEDISNTIRAL---FA-TGNFEDVRVLR--D----G-DTLLVQVK 73 (335) T ss_dssp CCCEECCEEEEESCSSSCHHHHHHTSSCCTTCEECHHHHHHHHHHH---HT-TSCEEEEEEEE--E----T-TEEEEEEE T ss_pred CCCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHH---HH-CCCCCEEEEEE--C----C-CEEEEEEE T ss_conf 6774897999999832799999974689999927999999999999---97-69942489997--2----8-88999888 Q ss_pred CCCCEEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC Q ss_conf 36632467787504431101222211100122112445666431023333457888888754232210012310124555 Q gi|254780772|r 190 EGVKAKINSIRFVGNKNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFDEEAIRAFYHDRGYAAVKVSSQVLFDKQKS 269 (781) Q Consensus 190 EG~~~~I~~I~f~Gn~~f~~~~L~~~~~~k~~~~~~~~~~~~~~~~~l~~D~~~l~~~Y~~~GY~d~~V~~~~~~~~~~~ 269 (781) |-| .|.+|.|+||+.+++.+|++.+.... ...+..|++..+..+.++|+++|+.+||+++.|..... ..+.. T Consensus 74 e~p--~i~~i~~~Gn~~~~~~~l~~~~~~~~-----~~~g~~~~~~~~~~~~~~i~~~Y~~~Gy~~a~V~~~~~-~~~~~ 145 (335) T 2qdf_A 74 ERP--TIASITFSGNKSVKDDMLKQNLEASG-----VRVGESLDRTTIADIEKGLEDFYYSVGKYSASVKAVVT-PLPRN 145 (335) T ss_dssp ECC--EEEEEEEESCCSSCHHHHHHHHHTTT-----CCTTSBCCTTSHHHHHHHHHHHGGGGTBSSCEEEEEEE-EETTT T ss_pred ECC--CCCCCEEECCCCCCHHHHHHHHHHHC-----CCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEEEEEE-ECCCC T ss_conf 645--31111266444233355545443202-----23456554345688999999999863725678877777-65777 Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC---------CCCEECCCCCCHHHHHCCCCCCCCCCCCCCC Q ss_conf 5410122022221000001233344455767777532116---------9962112100000000000023445642011 Q gi|254780772|r 270 GYVLIFQIDEGEIYTVGNISIQSTLQEIQKKTLLSLIRIR---------SGNLYNPQEIKESSEKISKYFFSGERPFVRV 340 (781) Q Consensus 270 ~~~i~~~I~EG~~y~i~~i~i~g~~~~~~~~~l~~~~~~k---------~G~~~~~~~~~~~~~~i~~~y~~~GY~fa~v 340 (781) .+.|++.|+||+++++.+|.|.|+. .++...|.+.+..+ .+..|+...++.+.++|.++|.++||..++| T Consensus 146 ~~~v~~~I~EG~~~~I~~I~f~Gn~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~l~~~y~~~Gy~d~~v 224 (335) T 2qdf_A 146 RVDLKLVFQEGVSAEIQQINIVGNH-AFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNI 224 (335) T ss_dssp EEEEEEEEECCCBCEEEEEEEESCC-SSCHHHHHGGGSCC--------------CCSCHHHHHHHHHHHHHTTTCTTCEE T ss_pred CCCEEEEEECCCCEEEEEEEECCCC-CCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEC T ss_conf 6313688512654179997631665-430456554333101221222234542005677777877667774301011101 Q ss_pred C-CCCCCCCCCCEEEEEEECCCCCCCEEECCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHH----HC-CC Q ss_conf 2-332234344046655412333220110033334320033210010010000000123444566677651----01-23 Q gi|254780772|r 341 K-TRINRDFAKRIVDIEYLIDQGSPLYVKRIEIEGNDQSYDSVIRRELELSEGDPINYSMIERAKRRIMAT----GY-FS 414 (781) Q Consensus 341 ~-~~~~~d~~~~~vdi~~~I~eg~~~~i~~I~I~GN~~T~d~VIrrel~~~~Gd~~~~~~i~~s~~~L~~l----g~-F~ 414 (781) . +....+.+...++|++.|+||+++++++|.|.||....+..+++.+.++||++||..++.+++++|.++ || |. T Consensus 225 ~~~~~~~~~d~~~~~i~~~i~EG~~y~v~~i~i~Gn~~~~~~~l~~~~~~k~G~~y~~~~i~~~~~~i~~~y~~~GY~~~ 304 (335) T 2qdf_A 225 DSTQVSLTPDKKGIYVTVNITEGDQYKLSGVEVSGNLAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYP 304 (335) T ss_dssp EEEEEEECTTSSEEEEEEEEECCCCCEEEEEEEEEECTTCHHHHHHHTCCCTTEECCHHHHHHHHHHHHHHHHTTTBSSC T ss_pred CCCEEEEECCCCCEEEEEEECCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE T ss_conf 33168885066440588731368459985118972443314679987457899950999999999999999986798414 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 44533254435654310233221122111 Q gi|254780772|r 415 EVNISQLPANDVSDYVILRVSVKQLSAGS 443 (781) Q Consensus 415 ~V~i~~~~~~~~~~~vdl~i~v~E~~tg~ 443 (781) .|...+.+. ...+.|||.+.+.|.+.-. T Consensus 305 ~V~~~~~~~-~~~~~vdv~~~I~eg~~~~ 332 (335) T 2qdf_A 305 RVQSMPEIN-DADKTVKLRVNVDAGNRFY 332 (335) T ss_dssp EEEEEEEEE-TTTTEEEEEEEEECCCBCC T ss_pred EEEEEEEEC-CCCCEEEEEEEEEECCCEE T ss_conf 899777884-8899898999997289558 No 5 >3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane; 3.30A {Escherichia coli} Probab=100.00 E-value=9e-36 Score=250.00 Aligned_cols=312 Identities=18% Similarity=0.290 Sum_probs=250.0 Q ss_pred EEECCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEEEEEE Q ss_conf 99365365799956543698899887300578637999999999999999997297001799876433898425889860 Q gi|254780772|r 110 LIERKIINHLFFSGNNNLKDDQLKMIVRSRSAAAYDEDTVNADVHNIKQAYASIGYLNVMVKVQHHSISPTTLNITYVIE 189 (781) Q Consensus 110 v~e~p~i~~i~~~Gn~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~i~~~y~~~Gy~~a~V~~~~~~~~~~~v~i~~~I~ 189 (781) +.+..+|.+|+|+||+.++++.+...+++++|+.+++..+++++++| |. .|||. +|+.+. + + ..|++.|. T Consensus 3 ~a~~~~I~~I~i~G~~~i~~~~i~~~~~~~~G~~~~~~~i~~~ik~L---~~-tg~F~-~V~i~~---~-g-~~l~i~V~ 72 (395) T 3efc_A 3 MAEGFVVKDIHFEGLQRVAVGAALLSMPVRTGDTVNDEDISNTIRAL---FA-TGNFE-DVRVLR---D-G-DTLLVQVK 72 (395) T ss_dssp ---CCCEEEEECSCCSSSCHHHHHHTCSCCTTSCCCTHHHHHHHHHH---HH-HCCEE-EEEEEC---C-S-SEEEEEEE T ss_pred CCCCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHH---HH-CCCEE-EEEEEE---C-C-CEEEEEEE T ss_conf 77771897899999841799999974689999937989999999999---96-79802-699996---2-9-99999999 Q ss_pred CCCCEEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC Q ss_conf 36632467787504431101222211100122112445666431023333457888888754232210012310124555 Q gi|254780772|r 190 EGVKAKINSIRFVGNKNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFDEEAIRAFYHDRGYAAVKVSSQVLFDKQKS 269 (781) Q Consensus 190 EG~~~~I~~I~f~Gn~~f~~~~L~~~~~~k~~~~~~~~~~~~~~~~~l~~D~~~l~~~Y~~~GY~d~~V~~~~~~~~~~~ 269 (781) |.| .|.+|.|+||+.+++..|++.+.... ...+..+++..++.+.++|+++|.++||+++.|..... ..+.. T Consensus 73 E~p--~i~~i~~~Gn~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~Y~~~Gy~~~~v~~~~~-~~~~~ 144 (395) T 3efc_A 73 ERP--TIASITFSGNKSVKDDMLKQNLEASG-----VRVGESLDRTTIADIEKGLEDFYYSVGKYSASVKAVVT-PLPRN 144 (395) T ss_dssp ECC--EEEEEEEESCTTSCHHHHHHHHHHHT-----CCSSSCCCGGGHHHHHHHHHHHHHTTTCCSCEEEEECC-BCTTS T ss_pred ECC--EEEEEEEECCCCCCHHHHHHHHHCCC-----CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE-ECCCC T ss_conf 446--16037999762134445433210134-----34444123566899999999999870863221023775-24675 Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC---------CCEECCCCCCHHHHHCCCCCCCCCCCCCCC Q ss_conf 54101220222210000012333444557677775321169---------962112100000000000023445642011 Q gi|254780772|r 270 GYVLIFQIDEGEIYTVGNISIQSTLQEIQKKTLLSLIRIRS---------GNLYNPQEIKESSEKISKYFFSGERPFVRV 340 (781) Q Consensus 270 ~~~i~~~I~EG~~y~i~~i~i~g~~~~~~~~~l~~~~~~k~---------G~~~~~~~~~~~~~~i~~~y~~~GY~fa~v 340 (781) .+.+++.|+||++.++.+|.|.|+. .++..+|.+.+..++ +..|+...++.+.++|.++|.++||..++| T Consensus 145 ~v~v~~~I~Eg~~~kI~~I~f~Gn~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~l~~~Y~~~Gy~d~~v 223 (395) T 3efc_A 145 RVDLKLVFQEGVSAEIQQINIVGNH-AFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNI 223 (395) T ss_dssp EEEEEEEEECCCCCCCCCCEEESCC-SSCTTTTGGGCCCCSSCCSCCSCTTTHHHHHHHHHHHHHHHHHHHHTTCTTCEE T ss_pred EEEEEEEEECCCCCCCEEEEEECCC-CCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCHHCCCHHHHHHHHHHCCEEEEEE T ss_conf 0554443200554221378983353-331155554443011100111013433222000031888888985567589997 Q ss_pred CC-CCCCCCCCCEEEEEEECCCCCCCEEECCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHH----HHCCCC Q ss_conf 23-3223434404665541233322011003333432003321001001000000012344456667765----101234 Q gi|254780772|r 341 KT-RINRDFAKRIVDIEYLIDQGSPLYVKRIEIEGNDQSYDSVIRRELELSEGDPINYSMIERAKRRIMA----TGYFSE 415 (781) Q Consensus 341 ~~-~~~~d~~~~~vdi~~~I~eg~~~~i~~I~I~GN~~T~d~VIrrel~~~~Gd~~~~~~i~~s~~~L~~----lg~F~~ 415 (781) .. ....+.+...+.++|.|+||+++++++|.|.||..-.+..+.+.+.++||++|+...+.+...+|.. .||.. T Consensus 224 ~~~~~~~~~~~~~v~i~i~i~EG~~y~v~~i~i~Gn~~~~~~~l~~~l~~~~g~~f~~~~~~~~~~~i~~~y~~~GY~~- 302 (395) T 3efc_A 224 DSTQVSLTPDKKGIYVTVNITEGDQYKLSGVEVSGNLAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAY- 302 (395) T ss_dssp EECCCEECTTSCSEECEEEEECCCCCEEEEECCBSCCTTCHHHHHHTCCCCSSCBCCHHHHHHHHHHHHHHHHHTTCSS- T ss_pred CCCEEEECCCCCCCEEEEECCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCC- T ss_conf 0216898157775157530244404788776650572000134555543204632340121002457899997517532- Q ss_pred CCCCCCC-CCCCCCCCCCCCCCCCCCC Q ss_conf 4533254-4356543102332211221 Q gi|254780772|r 416 VNISQLP-ANDVSDYVILRVSVKQLSA 441 (781) Q Consensus 416 V~i~~~~-~~~~~~~vdl~i~v~E~~t 441 (781) +.+.+.+ ....+..++|.+.+.|.+. T Consensus 303 a~v~~~~~~~~~~~~v~l~~~I~eg~~ 329 (395) T 3efc_A 303 PRVQSMPEINDADKTVKLRVNVDAGNR 329 (395) T ss_dssp CEEEEEEEEETTTTEEEEEEEEECCCC T ss_pred CCCCCCCEECCCCCEEEEEEEECCCCC T ss_conf 124663045056738999999844881 No 6 >3mc9_A ALR2269 protein; polypeptide transport associated, potra, outer bacterial MEM protein membrane transport, beta barrel biogenesis, membran; 2.20A {Nostoc SP} PDB: 3mc8_A Probab=100.00 E-value=2.8e-35 Score=246.74 Aligned_cols=234 Identities=21% Similarity=0.346 Sum_probs=187.4 Q ss_pred CEEEEEEEEECCCCCCHH----HHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEC----CEEEEEEEECCEE Q ss_conf 526858999665007988----99997487898826889999999999967980038999869----9899999936536 Q gi|254780772|r 45 TSIVRRIEIRGATNVGKE----VILSRIPVVVGQSISDADLDHAVKNIYAMGYFSNVKIKIVD----SVLIIDLIERKII 116 (781) Q Consensus 45 ~~~i~~I~i~G~~~i~~~----~i~~~~~~~~G~~~~~~~i~~~i~~l~~~g~F~~v~~~~~~----~~l~~~v~e~p~i 116 (781) ...|++|.|+|+...++. .|+..|.+|+|+.++++.|++|+++||+||||+||++..++ ..|+|.|.|+|+| T Consensus 61 ~v~i~eV~i~G~~~~~~~eLe~~i~~~i~~r~G~~~s~~~l~~di~~L~~tG~F~~V~~~~~~~~~gv~l~~~v~e~p~i 140 (316) T 3mc9_A 61 RVLVSEVLVRPQSGQLTPELETQVYNVIRTQPGRTTTRSQLQEDINAIFGTGFFSNVQASPEDTPLGVRVSFIVQPNPVL 140 (316) T ss_dssp CEEEEEEEEEESSSCCCHHHHHHHHHHCCCCTTSEECHHHHHHHHHHHHHTSCEEEEEEEEEEETTEEEEEEEEEECCBC T ss_pred CEEEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCEEEEEEEEECCEE T ss_conf 15789999980678888899999998601689982799999999999997599115899987469855999999878789 Q ss_pred EEEEEECCCC------CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEEEEEEC Q ss_conf 5799956543------6988998873005786379999999999999999972970017998764338984258898603 Q gi|254780772|r 117 NHLFFSGNNN------LKDDQLKMIVRSRSAAAYDEDTVNADVHNIKQAYASIGYLNVMVKVQHHSISPTTLNITYVIEE 190 (781) Q Consensus 117 ~~i~~~Gn~~------~~~~~l~~~~~~~~g~~~~~~~~~~~~~~i~~~y~~~Gy~~a~V~~~~~~~~~~~v~i~~~I~E 190 (781) ..|.|+||.. ++.+.|.+.+.++.|++|+...+++++++|+++|.++||+.|+|.......+++. T Consensus 141 ~~i~i~Gn~~~~~~~ll~~~~l~~~~~~~~G~~~n~~~l~~~~~~I~~~Y~~~GY~~a~V~~~~~~~~~g~--------- 211 (316) T 3mc9_A 141 SKVEIQANPGTNVPSVLPQATADEIFRAQYGKILNLRDLQEGIKELTKRYQDQGYVLANVVGAPQVSENGV--------- 211 (316) T ss_dssp CEEEEECCC----CCSSCTTHHHHHHGGGTTSBCCHHHHHHHHHHHHHHHHHTTCTTCEECSSCEECTTSE--------- T ss_pred EEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCC--------- T ss_conf 99999744334644448899999875004798158889999999999999764912689986324246655--------- Q ss_pred CCCEEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC Q ss_conf 66324677875044311012222111001221124456664310233334578888887542322100123101245555 Q gi|254780772|r 191 GVKAKINSIRFVGNKNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFDEEAIRAFYHDRGYAAVKVSSQVLFDKQKSG 270 (781) Q Consensus 191 G~~~~I~~I~f~Gn~~f~~~~L~~~~~~k~~~~~~~~~~~~~~~~~l~~D~~~l~~~Y~~~GY~d~~V~~~~~~~~~~~~ 270 (781) T Consensus 212 -------------------------------------------------------------------------------- 211 (316) T 3mc9_A 212 -------------------------------------------------------------------------------- 211 (316) T ss_dssp -------------------------------------------------------------------------------- T ss_pred -------------------------------------------------------------------------------- T ss_conf -------------------------------------------------------------------------------- Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEECCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 41012202222100000123334445576777753211699621121000000000000234456420112332234344 Q gi|254780772|r 271 YVLIFQIDEGEIYTVGNISIQSTLQEIQKKTLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPFVRVKTRINRDFAK 350 (781) Q Consensus 271 ~~i~~~I~EG~~y~i~~i~i~g~~~~~~~~~l~~~~~~k~G~~~~~~~~~~~~~~i~~~y~~~GY~fa~v~~~~~~d~~~ 350 (781) |++.|.||. +..+. T Consensus 212 --v~l~V~eg~---~~~i~------------------------------------------------------------- 225 (316) T 3mc9_A 212 --VTLQVAEGV---VENIS------------------------------------------------------------- 225 (316) T ss_dssp --EEEEEECCE---EC---------------------------------------------------------------- T ss_pred --CEEEEEEEC---CCCCE------------------------------------------------------------- T ss_conf --215898511---22102------------------------------------------------------------- Q ss_pred CEEEEEEECCCCCCCEEECCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC Q ss_conf 04665541233322011003333432003321001001000000012344456667765101234453325443565431 Q gi|254780772|r 351 RIVDIEYLIDQGSPLYVKRIEIEGNDQSYDSVIRRELELSEGDPINYSMIERAKRRIMATGYFSEVNISQLPANDVSDYV 430 (781) Q Consensus 351 ~~vdi~~~I~eg~~~~i~~I~I~GN~~T~d~VIrrel~~~~Gd~~~~~~i~~s~~~L~~lg~F~~V~i~~~~~~~~~~~v 430 (781) +.+...+|.+.+...+.+.| +|+|+||+|+|.++||++||..++++++++|+++|||++|++.+.|.. .++.+ T Consensus 226 ----v~~~~~eg~~~~~~~~~~~g--~T~~~vI~Rel~~~~G~~fn~~~l~~d~~rL~~lg~F~~V~v~~~p~~-d~~~v 298 (316) T 3mc9_A 226 ----VRFRNKEGQDVNEQGQPIRG--RTQDYIITREVELKPGQVFNRNTVQKDLQRVFGTGLFEDVNVSLDPGT-DPTKV 298 (316) T ss_dssp -------------------------------------------------------------------------------- T ss_pred ----EEEEECCCCEEEEECCCCCC--CCCCHHEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECC-CCCEE T ss_conf ----47872365157750321112--331331444343389987799999999999985699616689987658-99938 Q ss_pred CCCCCCCCCC Q ss_conf 0233221122 Q gi|254780772|r 431 ILRVSVKQLS 440 (781) Q Consensus 431 dl~i~v~E~~ 440 (781) +|.++|+|+. T Consensus 299 ~v~i~V~E~s 308 (316) T 3mc9_A 299 NVVVNVVERS 308 (316) T ss_dssp ---------- T ss_pred EEEEEEEECC T ss_conf 9999999536 No 7 >2x8x_X TLR1789 protein, OMP85; chaperone, TOC75, protein targeting; 1.97A {Thermosynechococcus elongatus} Probab=100.00 E-value=8.6e-35 Score=243.57 Aligned_cols=232 Identities=17% Similarity=0.242 Sum_probs=198.2 Q ss_pred CCCCEEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC Q ss_conf 36632467787504431101222211100122112445666431023333457888888754232210012310124555 Q gi|254780772|r 190 EGVKAKINSIRFVGNKNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFDEEAIRAFYHDRGYAAVKVSSQVLFDKQKS 269 (781) Q Consensus 190 EG~~~~I~~I~f~Gn~~f~~~~L~~~~~~k~~~~~~~~~~~~~~~~~l~~D~~~l~~~Y~~~GY~d~~V~~~~~~~~~~~ 269 (781) |||+++|.+|.|+||+.+++..|+..|.+++. +.|+++.++.|+++| |++.||.|++|... . . T Consensus 1 e~~~~~i~~i~i~G~~~~~~~~l~~~i~~~~g--------~~~~~~~l~~d~~~l---~~~g~f~dv~v~~~----~--~ 63 (235) T 2x8x_X 1 DEPKVLIAEVVVEGATPELEQLVYQVISTRPG--------STTTRTQLQQDTNAI---FATGFFADVNAVPR----D--T 63 (235) T ss_dssp CCCCEEEEEEEEESCCHHHHHHHHHHCCCCTT--------CEECHHHHHHHHHHH---HTTSCEEEEEEEEE----E--E T ss_pred CCCEEEEEEEEEECCCCCCHHHHHHHCCCCCC--------CCCCHHHHHHHHHHH---HHCCCEEEEEECCC----C--C T ss_conf 99729999999999970798899975467899--------854999999999999---98498146763034----4--6 Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEECCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 54101220222210000012333444557677775321169962112100000000000023445642011233223434 Q gi|254780772|r 270 GYVLIFQIDEGEIYTVGNISIQSTLQEIQKKTLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPFVRVKTRINRDFA 349 (781) Q Consensus 270 ~~~i~~~I~EG~~y~i~~i~i~g~~~~~~~~~l~~~~~~k~G~~~~~~~~~~~~~~i~~~y~~~GY~fa~v~~~~~~d~~ 349 (781) ...+.+.+.+|+++.+++|.|+|+ ..++.++|.+.+.+++|++|+...++++.++|.+.|.++||++++|.+....+. T Consensus 64 ~~~v~~~~~~~~~~~i~~i~~~G~-~~~~~~~l~~~l~~~~g~~~~~~~l~~~~~~i~~~y~~~Gy~~a~v~~~~~~~~- 141 (235) T 2x8x_X 64 PLGVRITFVVRPYPVLRAVQVAGN-QVLTQEKVNEIFAPQIGRTLNLRELQAGIEKINTFYRDNGYILGQVVGTPQVDP- 141 (235) T ss_dssp TTEEEEEEEEEECCBCCEEEEESC-SSSCHHHHHHHHGGGTTSBCCHHHHHHHHHHHHHHHHHTTCTTCEEEEEEEECT- T ss_pred CCCCEEEEEECCCEEEEEEEEECC-CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECC- T ss_conf 677158998602108999999898-458999999887541476358999999999999999867923799997567357- Q ss_pred CCEEEEEEECCCCCCCEEECCCCCC---CCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC Q ss_conf 4046655412333220110033334---3200332100100100000001234445666776510123445332544356 Q gi|254780772|r 350 KRIVDIEYLIDQGSPLYVKRIEIEG---NDQSYDSVIRRELELSEGDPINYSMIERAKRRIMATGYFSEVNISQLPANDV 426 (781) Q Consensus 350 ~~~vdi~~~I~eg~~~~i~~I~I~G---N~~T~d~VIrrel~~~~Gd~~~~~~i~~s~~~L~~lg~F~~V~i~~~~~~~~ 426 (781) ++.+.+.+.+.++.++++..|.+.| |.+|++++|+|++.+.||++|+..++++++++|+++|+|++|++.+.|.. . T Consensus 142 ~~~~~~~v~~~~~~~~~~~~i~~~~~~~~~~t~~~vi~r~~~~~~G~~~~~~~l~~~~~~L~~~~~f~~V~i~~~~~~-~ 220 (235) T 2x8x_X 142 DGVVTLQVAEGVVEQVTYRFLNKEGEPTKQRTRDFVISREMDTQPGVVLNQKTVQADLRRLFELGLFEDVQVALEPGQ-N 220 (235) T ss_dssp TSEEEEEEECCBEEEEEEEEBCTTSCBCCCCSCHHHHHTTCSCCTTSBCCHHHHHHHHHHHHHHTCEEEEEEEEEECS-S T ss_pred CCEEEEEEEEEECCEEEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECC-C T ss_conf 984899999951101478874102476655427887431102589984699999999999984799614589973069-9 Q ss_pred CCCCCCCCCCCCCCC Q ss_conf 543102332211221 Q gi|254780772|r 427 SDYVILRVSVKQLSA 441 (781) Q Consensus 427 ~~~vdl~i~v~E~~t 441 (781) ++.+||.++|+|+|| T Consensus 221 ~~~vdl~v~V~E~~T 235 (235) T 2x8x_X 221 PRRVNLILNIKERNT 235 (235) T ss_dssp TTSEEEEEEEEECCC T ss_pred CCEEEEEEEEEECCC T ss_conf 994899999985789 No 8 >2x8x_X TLR1789 protein, OMP85; chaperone, TOC75, protein targeting; 1.97A {Thermosynechococcus elongatus} Probab=99.97 E-value=8.8e-29 Score=204.25 Aligned_cols=223 Identities=14% Similarity=0.204 Sum_probs=184.4 Q ss_pred CEEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEE--C--CEEEEEEEECCEEEEEE Q ss_conf 5268589996650079889999748789882688999999999996798003899986--9--98999999365365799 Q gi|254780772|r 45 TSIVRRIEIRGATNVGKEVILSRIPVVVGQSISDADLDHAVKNIYAMGYFSNVKIKIV--D--SVLIIDLIERKIINHLF 120 (781) Q Consensus 45 ~~~i~~I~i~G~~~i~~~~i~~~~~~~~G~~~~~~~i~~~i~~l~~~g~F~~v~~~~~--~--~~l~~~v~e~p~i~~i~ 120 (781) ...|++|.|+||+.++++.++..+.+++|+.+++..+++++++||++|+|+||++..+ + ..++|.+.|+|.|.+|. T Consensus 4 ~~~i~~i~i~G~~~~~~~~l~~~i~~~~g~~~~~~~l~~d~~~l~~~g~f~dv~v~~~~~~~~v~~~~~~~~~~~i~~i~ 83 (235) T 2x8x_X 4 KVLIAEVVVEGATPELEQLVYQVISTRPGSTTTRTQLQQDTNAIFATGFFADVNAVPRDTPLGVRITFVVRPYPVLRAVQ 83 (235) T ss_dssp CEEEEEEEEESCCHHHHHHHHHHCCCCTTCEECHHHHHHHHHHHHTTSCEEEEEEEEEEETTEEEEEEEEEECCBCCEEE T ss_pred EEEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEECCCEEEEEEE T ss_conf 29999999999970798899975467899854999999999999984981467630344667715899860210899999 Q ss_pred EECCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEEEEEECCCCEEEEEEE Q ss_conf 95654369889988730057863799999999999999999729700179987643389842588986036632467787 Q gi|254780772|r 121 FSGNNNLKDDQLKMIVRSRSAAAYDEDTVNADVHNIKQAYASIGYLNVMVKVQHHSISPTTLNITYVIEEGVKAKINSIR 200 (781) Q Consensus 121 ~~Gn~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~i~~~y~~~Gy~~a~V~~~~~~~~~~~v~i~~~I~EG~~~~I~~I~ 200 (781) |+||..+++++|.+.+.+++|++|++..+++++++|+++|+++||..|.|.......+++.+.+.+.+.++.++.+..|. T Consensus 84 ~~G~~~~~~~~l~~~l~~~~g~~~~~~~l~~~~~~i~~~y~~~Gy~~a~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~ 163 (235) T 2x8x_X 84 VAGNQVLTQEKVNEIFAPQIGRTLNLRELQAGIEKINTFYRDNGYILGQVVGTPQVDPDGVVTLQVAEGVVEQVTYRFLN 163 (235) T ss_dssp EESCSSSCHHHHHHHHGGGTTSBCCHHHHHHHHHHHHHHHHHTTCTTCEEEEEEEECTTSEEEEEEECCBEEEEEEEEBC T ss_pred EECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCEEEEEEEEEECCEEEEEEEE T ss_conf 98984589999998875414763589999999999999998679237999975673579848999999511014788741 Q ss_pred EEC---CCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCCCCCCCCCCEEEE Q ss_conf 504---431101222211100122112445666431023333457888888754232-2100123101245555410122 Q gi|254780772|r 201 FVG---NKNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFDEEAIRAFYHDRGYA-AVKVSSQVLFDKQKSGYVLIFQ 276 (781) Q Consensus 201 f~G---n~~f~~~~L~~~~~~k~~~~~~~~~~~~~~~~~l~~D~~~l~~~Y~~~GY~-d~~V~~~~~~~~~~~~~~i~~~ 276 (781) +.| |....+.-+++.+. +..++.|++..++.++.+| |+ .||| ++++.. ....+.+.+.|.+. T Consensus 164 ~~~~~~~~~t~~~vi~r~~~--------~~~G~~~~~~~l~~~~~~L---~~-~~~f~~V~i~~--~~~~~~~~vdl~v~ 229 (235) T 2x8x_X 164 KEGEPTKQRTRDFVISREMD--------TQPGVVLNQKTVQADLRRL---FE-LGLFEDVQVAL--EPGQNPRRVNLILN 229 (235) T ss_dssp TTSCBCCCCSCHHHHHTTCS--------CCTTSBCCHHHHHHHHHHH---HH-HTCEEEEEEEE--EECSSTTSEEEEEE T ss_pred CCCCCCCCCCHHHHHHHHCC--------CCCCCCCCHHHHHHHHHHH---HH-CCCCCEEEEEE--EECCCCCEEEEEEE T ss_conf 02476655427887431102--------5899846999999999999---84-79961458997--30699994899999 Q ss_pred ECCCC Q ss_conf 02222 Q gi|254780772|r 277 IDEGE 281 (781) Q Consensus 277 I~EG~ 281 (781) |.|++ T Consensus 230 V~E~~ 234 (235) T 2x8x_X 230 IKERN 234 (235) T ss_dssp EEECC T ss_pred EEECC T ss_conf 98578 No 9 >3og5_A Outer membrane protein assembly complex, YAET Pro; potra fold, insertion of outer membrane proteins, protein BI; 2.69A {Escherichia coli} Probab=99.97 E-value=2e-31 Score=221.49 Aligned_cols=163 Identities=25% Similarity=0.431 Sum_probs=156.2 Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEECCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE Q ss_conf 22210000012333444557677775321169962112100000000000023445642011233223434404665541 Q gi|254780772|r 279 EGEIYTVGNISIQSTLQEIQKKTLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPFVRVKTRINRDFAKRIVDIEYL 358 (781) Q Consensus 279 EG~~y~i~~i~i~g~~~~~~~~~l~~~~~~k~G~~~~~~~~~~~~~~i~~~y~~~GY~fa~v~~~~~~d~~~~~vdi~~~ 358 (781) +|+||+|++|+|.||. .++.++|.+.+++++|++|+...++++.++|.++|.++||+||+|.+.+..+..+++|+++|. T Consensus 2 ~~e~y~v~~I~~~Gn~-~~~~~~l~~~l~lk~G~~~~~~~i~~~~~~l~~~y~~~Gy~~a~V~~~~~~~~~~~~v~i~~~ 80 (166) T 3og5_A 2 AMDQYKLSGVEVSGNL-AGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPEINDADKTVKLRVN 80 (166) T ss_dssp CCTTSEEEEEEEEEEC-TTCHHHHHHHHCCCTTCBCCHHHHHHHHHHHHHHHHTTTCCSCEEEEEEEEETTTTEEEEEEE T ss_pred CCCCEEEEEEEEECCC-CCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCEEEEEEE T ss_conf 8677089889998578-789899998855688861249999999999999999779745898520067258887879999 Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 23332201100333343200332100100100000001234445666776510123445332544356543102332211 Q gi|254780772|r 359 IDQGSPLYVKRIEIEGNDQSYDSVIRRELELSEGDPINYSMIERAKRRIMATGYFSEVNISQLPANDVSDYVILRVSVKQ 438 (781) Q Consensus 359 I~eg~~~~i~~I~I~GN~~T~d~VIrrel~~~~Gd~~~~~~i~~s~~~L~~lg~F~~V~i~~~~~~~~~~~vdl~i~v~E 438 (781) |+||++++|++|.|.||.+|+|.+|+|+|.++||++|+..++++++++|+++|||+.|.+.+.+.+..++.++|.+.|+| T Consensus 81 i~eG~~~~i~~I~i~Gn~~~~~~~l~r~~~~~~G~~~~~~~l~~~~~~L~~~g~F~~v~i~~~~~~~~~~~v~i~i~v~E 160 (166) T 3og5_A 81 VDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVDQGKERLNRLGFFETVDTDTQRVPGSPDQVDVVYKVKE 160 (166) T ss_dssp EECCCCCEEEEEEEESCCSSCHHHHHTTCCSCTTSBCCHHHHHHHHHHHHTTSCEEEEEEEEEECTTCSSEEEEEEEEEE T ss_pred EECCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCEEEEEEEEEE T ss_conf 81471577500111124555189999986402577748789999999998469951426763226899986999999996 Q ss_pred CCCC Q ss_conf 2211 Q gi|254780772|r 439 LSAG 442 (781) Q Consensus 439 ~~tg 442 (781) +||| T Consensus 161 ~~tG 164 (166) T 3og5_A 161 RNTG 164 (166) T ss_dssp C--- T ss_pred CCCC T ss_conf 7899 No 10 >3og5_A Outer membrane protein assembly complex, YAET Pro; potra fold, insertion of outer membrane proteins, protein BI; 2.69A {Escherichia coli} Probab=99.88 E-value=1.4e-21 Score=157.00 Aligned_cols=158 Identities=16% Similarity=0.254 Sum_probs=137.6 Q ss_pred EECCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEE-ECCCCCEEEEEEEE Q ss_conf 93653657999565436988998873005786379999999999999999972970017998764-33898425889860 Q gi|254780772|r 111 IERKIINHLFFSGNNNLKDDQLKMIVRSRSAAAYDEDTVNADVHNIKQAYASIGYLNVMVKVQHH-SISPTTLNITYVIE 189 (781) Q Consensus 111 ~e~p~i~~i~~~Gn~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~i~~~y~~~Gy~~a~V~~~~~-~~~~~~v~i~~~I~ 189 (781) .|++.|.+|.|+||..+++++|.+.+.+++|++|++..+.+++++|+++|.++||++|+|++... ..+++.++|+|.|+ T Consensus 3 ~e~y~v~~I~~~Gn~~~~~~~l~~~l~lk~G~~~~~~~i~~~~~~l~~~y~~~Gy~~a~V~~~~~~~~~~~~v~i~~~i~ 82 (166) T 3og5_A 3 MDQYKLSGVEVSGNLAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPEINDADKTVKLRVNVD 82 (166) T ss_dssp CTTSEEEEEEEEEECTTCHHHHHHHHCCCTTCBCCHHHHHHHHHHHHHHHHTTTCCSCEEEEEEEEETTTTEEEEEEEEE T ss_pred CCCEEEEEEEEECCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCEEEEEEEEE T ss_conf 67708988999857878989999885568886124999999999999999977974589852006725888787999981 Q ss_pred CCCCEEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCCCCCCC Q ss_conf 366324677875044311012222111001221124456664310233334578888887542322-1001231012455 Q gi|254780772|r 190 EGVKAKINSIRFVGNKNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFDEEAIRAFYHDRGYAA-VKVSSQVLFDKQK 268 (781) Q Consensus 190 EG~~~~I~~I~f~Gn~~f~~~~L~~~~~~k~~~~~~~~~~~~~~~~~l~~D~~~l~~~Y~~~GY~d-~~V~~~~~~~~~~ 268 (781) ||+++.|.+|.|.||..++++.|++.|..++. +.|++..++.+.++|.+ .|||+ +.|.... ...+. T Consensus 83 eG~~~~i~~I~i~Gn~~~~~~~l~r~~~~~~G--------~~~~~~~l~~~~~~L~~----~g~F~~v~i~~~~-~~~~~ 149 (166) T 3og5_A 83 AGNRFYVRKIRFEGNDTSKDAVLRREMRQMEG--------AWLGSDLVDQGKERLNR----LGFFETVDTDTQR-VPGSP 149 (166) T ss_dssp CCCCCEEEEEEEESCCSSCHHHHHTTCCSCTT--------SBCCHHHHHHHHHHHHT----TSCEEEEEEEEEE-CTTCS T ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHCCCC--------CCCCHHHHHHHHHHHHH----CCCCEEEEEEEEE-CCCCC T ss_conf 47157750011112455518999998640257--------77487899999999984----6995142676322-68999 Q ss_pred CCCCEEEEECCCC Q ss_conf 5541012202222 Q gi|254780772|r 269 SGYVLIFQIDEGE 281 (781) Q Consensus 269 ~~~~i~~~I~EG~ 281 (781) ..+.|++.|.|++ T Consensus 150 ~~v~i~i~v~E~~ 162 (166) T 3og5_A 150 DQVDVVYKVKERN 162 (166) T ss_dssp SEEEEEEEEEEC- T ss_pred CEEEEEEEEEECC T ss_conf 8699999999678 No 11 >3mc9_A ALR2269 protein; polypeptide transport associated, potra, outer bacterial MEM protein membrane transport, beta barrel biogenesis, membran; 2.20A {Nostoc SP} PDB: 3mc8_A Probab=99.67 E-value=2.6e-15 Score=116.05 Aligned_cols=152 Identities=14% Similarity=0.248 Sum_probs=105.6 Q ss_pred CCEEEEEEEEECCCCCCHHHHHH----HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 63246778750443110122221----11001221124456664310233334578888887542322100123101245 Q gi|254780772|r 192 VKAKINSIRFVGNKNYSHARLER----VISIRTSGYFSFGKTDVYSKERMSFDEEAIRAFYHDRGYAAVKVSSQVLFDKQ 267 (781) Q Consensus 192 ~~~~I~~I~f~Gn~~f~~~~L~~----~~~~k~~~~~~~~~~~~~~~~~l~~D~~~l~~~Y~~~GY~d~~V~~~~~~~~~ 267 (781) +++.|..|.|+||..+++.+|.. .|.+++ ++.|+++.++.|+++| | +-||| ..|+.. .... T Consensus 60 ~~v~i~eV~i~G~~~~~~~eLe~~i~~~i~~r~--------G~~~s~~~l~~di~~L---~-~tG~F-~~V~~~--~~~~ 124 (316) T 3mc9_A 60 PRVLVSEVLVRPQSGQLTPELETQVYNVIRTQP--------GRTTTRSQLQEDINAI---F-GTGFF-SNVQAS--PEDT 124 (316) T ss_dssp CCEEEEEEEEEESSSCCCHHHHHHHHHHCCCCT--------TSEECHHHHHHHHHHH---H-HTSCE-EEEEEE--EEEE T ss_pred CCEEEEEEEEEECCCCCCHHHHHHHHHHCCCCC--------CCCCCHHHHHHHHHHH---H-HCCCC-EEEEEE--EEEC T ss_conf 715789999980678888899999998601689--------9827999999999999---9-75991-158999--8746 Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCC-----CCCCHHHHHHHHHCCCCCEECCCCCCHHHHHCCCCCCCCCCCCCCCCC Q ss_conf 555410122022221000001233344-----455767777532116996211210000000000002344564201123 Q gi|254780772|r 268 KSGYVLIFQIDEGEIYTVGNISIQSTL-----QEIQKKTLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPFVRVKT 342 (781) Q Consensus 268 ~~~~~i~~~I~EG~~y~i~~i~i~g~~-----~~~~~~~l~~~~~~k~G~~~~~~~~~~~~~~i~~~y~~~GY~fa~v~~ 342 (781) ..++.|+|.|.|++. ++.|.|.|+. ..++.+.|++.+.+++|++|+...+++++++|.++|.++||.+|+|.+ T Consensus 125 ~~gv~l~~~v~e~p~--i~~i~i~Gn~~~~~~~ll~~~~l~~~~~~~~G~~~n~~~l~~~~~~I~~~Y~~~GY~~a~V~~ 202 (316) T 3mc9_A 125 PLGVRVSFIVQPNPV--LSKVEIQANPGTNVPSVLPQATADEIFRAQYGKILNLRDLQEGIKELTKRYQDQGYVLANVVG 202 (316) T ss_dssp TTEEEEEEEEEECCB--CCEEEEECCC----CCSSCTTHHHHHHGGGTTSBCCHHHHHHHHHHHHHHHHHTTCTTCEECS T ss_pred CCCEEEEEEEEECCE--EEEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEE T ss_conf 985599999987878--999999744334644448899999875004798158889999999999999764912689986 Q ss_pred CCCCCCCCCEEEEEEECCCCC Q ss_conf 322343440466554123332 Q gi|254780772|r 343 RINRDFAKRIVDIEYLIDQGS 363 (781) Q Consensus 343 ~~~~d~~~~~vdi~~~I~eg~ 363 (781) ....+. ++. +.+.|.+|. T Consensus 203 ~~~~~~-~g~--v~l~V~eg~ 220 (316) T 3mc9_A 203 APQVSE-NGV--VTLQVAEGV 220 (316) T ss_dssp SCEECT-TSE--EEEEEECCE T ss_pred EEEECC-CCC--CEEEEEEEC T ss_conf 324246-655--215898511 No 12 >2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} Probab=99.50 E-value=1.1e-13 Score=105.49 Aligned_cols=167 Identities=12% Similarity=0.053 Sum_probs=127.7 Q ss_pred CCEEEEEEEECCCCEEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 84258898603663246778750443110122221110012211244566643102333345788888875423221001 Q gi|254780772|r 180 TTLNITYVIEEGVKAKINSIRFVGNKNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFDEEAIRAFYHDRGYAAVKVS 259 (781) Q Consensus 180 ~~v~i~~~I~EG~~~~I~~I~f~Gn~~f~~~~L~~~~~~k~~~~~~~~~~~~~~~~~l~~D~~~l~~~Y~~~GY~d~~V~ 259 (781) ....+...+++|+++.|+.|.|+|++.+++.+|..++.... +..++...+...+++|.++|+++||+.++|. T Consensus 45 ~~~~~~~~~~~g~~~~v~~i~~~g~~~~~~~~l~~~~~~~~--------G~~~~~~~l~~~~~~i~~~y~~~GY~~a~v~ 116 (554) T 2qdz_A 45 AAPARKPDATSGHTVTVHAVDLDFGVEGRLFDPAPLVQDYL--------NRPLDNEQLFLLVKALSAALYDRGYATSIVT 116 (554) T ss_dssp --------CBCCCSSSSCCEEEECCSSSCCCSCSTTSTTSS--------SSCBCSTTHHHHHHHHHHHHHHTTCTTCEEE T ss_pred CCCCCCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE T ss_conf 77754466888863899999984886589899998778625--------9846999999999999999997898468987 Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCH---HHHHHHHHCCCCCEECCCCCCHHHHHCCCCCCCCCCC Q ss_conf 2310124555541012202222100000123334445576---7777532116996211210000000000002344564 Q gi|254780772|r 260 SQVLFDKQKSGYVLIFQIDEGEIYTVGNISIQSTLQEIQK---KTLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERP 336 (781) Q Consensus 260 ~~~~~~~~~~~~~i~~~I~EG~~y~i~~i~i~g~~~~~~~---~~l~~~~~~k~G~~~~~~~~~~~~~~i~~~y~~~GY~ 336 (781) .+ ..+-....|++.|.|| +++.|.++|+.. ... ..+...+++++|++|+..++++.++.|.+ .|+ T Consensus 117 ~~---~q~~~~g~l~i~v~eG---~i~~i~i~g~~~-~~~~~~~~~~~~~~~~~g~~~~~~~le~~~~~l~~----~g~- 184 (554) T 2qdz_A 117 FV---PPGVVDGVLKLKVEWG---RIKGWLIDGKPL-EGTRDRMMVFSAMPGWQDKVLNVFDIDQAIYNINN----GGK- 184 (554) T ss_dssp EE---EEEEETTEEEEEEECC---EEEEEEETTEEC-CSHHHHHHHHHHSTTCTTCBCCHHHHHHHHHHHCS----SSE- T ss_pred EC---CCCCCCCEEEEEEEEC---EEEEEEEECCCC-CCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH----CCC- T ss_conf 12---4347686799999985---155689832555-67136666776476777884678899999998750----586- Q ss_pred CCCCCCCCCCCCCCCEEEEEEECCCCCCCEEE Q ss_conf 20112332234344046655412333220110 Q gi|254780772|r 337 FVRVKTRINRDFAKRIVDIEYLIDQGSPLYVK 368 (781) Q Consensus 337 fa~v~~~~~~d~~~~~vdi~~~I~eg~~~~i~ 368 (781) ++++... +....+..++.+.+.+.++..+. T Consensus 185 ~~~v~l~--p~~~~g~~~~~v~v~~~~~~~~~ 214 (554) T 2qdz_A 185 TGNITIV--PADEYGYSYLDLQLQRRALPRVS 214 (554) T ss_dssp EEEEEEE--ECSSTTEEEEEEEEEECCSCEEE T ss_pred CEEEEEE--ECCCCCCCEEEEEEEECCCCCCC T ss_conf 2258986--07889852267898873555321 No 13 >2vh2_A FTSQ, cell division protein FTSQ; potra, cell cycle; 3.4A {Yersinia enterocolitica} Probab=96.40 E-value=0.0094 Score=33.86 Aligned_cols=71 Identities=11% Similarity=0.178 Sum_probs=59.8 Q ss_pred EEEEEEEECC-CCCCHHHHHHH-CCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEE-CCEEEEEEEECCEEE Q ss_conf 6858999665-00798899997-48789882688999999999996798003899986-998999999365365 Q gi|254780772|r 47 IVRRIEIRGA-TNVGKEVILSR-IPVVVGQSISDADLDHAVKNIYAMGYFSNVKIKIV-DSVLIIDLIERKIIN 117 (781) Q Consensus 47 ~i~~I~i~G~-~~i~~~~i~~~-~~~~~G~~~~~~~i~~~i~~l~~~g~F~~v~~~~~-~~~l~~~v~e~p~i~ 117 (781) -|++|.|+|+ +.++.+.|... .++..|..+=.-++.+.-++|-+.-+.++|+|... .+.|.|.|+|+-.|. T Consensus 27 ~I~~V~I~G~~~~~~~~~I~~al~~~~~~~ni~~ld~~~i~~~L~~~pwVk~a~V~R~~P~tL~I~V~Er~PvA 100 (255) T 2vh2_A 27 PLSKLVVTGERHYTTNDDIRQAILSLGAPGTFMTQDVNIIQQQIERLPWIQQASVRKQWPDELKIHLVEYVPFA 100 (255) T ss_dssp CCCEEEEESCCSSCCHHHHHHHHTTSCCSSTTTSCHHHHHHHHTSCCSSEEEEEEEEETTTEEEEEEEECCCCB T ss_pred CEEEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEECHHHHHHHHHCCCCEEEEEEEEECCCEEEEEEEEEEEEE T ss_conf 30499997886018999999998622589963998799999999708985799999967991799999877668 No 14 >2vh1_A FTSQ, cell division protein FTSQ; potra, membrane, septation, cell cycle, transmembrane, inner membrane; 2.7A {Escherichia coli} Probab=96.11 E-value=0.046 Score=29.39 Aligned_cols=71 Identities=14% Similarity=0.196 Sum_probs=52.1 Q ss_pred EEEEEEECCC-CCCHHHHHH-HCCCCCCCCCCHHHHHHHHHHHH-HCCCCCEEEEEEE-CCEEEEEEEECCEEEE Q ss_conf 8589996650-079889999-74878988268899999999999-6798003899986-9989999993653657 Q gi|254780772|r 48 VRRIEIRGAT-NVGKEVILS-RIPVVVGQSISDADLDHAVKNIY-AMGYFSNVKIKIV-DSVLIIDLIERKIINH 118 (781) Q Consensus 48 i~~I~i~G~~-~i~~~~i~~-~~~~~~G~~~~~~~i~~~i~~l~-~~g~F~~v~~~~~-~~~l~~~v~e~p~i~~ 118 (781) |++|.|+||. .++.+.|.. .+++..|..+-.-++.+.-++|- +..+.++|+|... .+.|.|.|+|+-.|.. T Consensus 1 l~~i~V~Gn~~~~~~e~I~~~l~~~~~~~~~~~~d~~~l~~~le~~~p~Vk~a~V~r~~P~~l~I~V~Er~Pva~ 75 (220) T 2vh1_A 1 MSKLVLTGERHYTRNDDIRQSILALGEPGTFMTQDVNIIQTQIEQRLPWIKQVSVRKQWPDELKIHLVEYVPIAR 75 (220) T ss_dssp -CEEEEESCCSSCCHHHHHHHHHTTSCTTCGGGSCHHHHHHHHHHHCTTEEEEEEEEETTTEEEEEEEECCEEEE T ss_pred CCEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEECHHHHHHHHHHCCCCEEEEEEEEECCCEEEEEEEEEEEEEE T ss_conf 958999699742899999998752057997145189999999874299377999999589808999996045899 No 15 >3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid, ATP-binding, cytoplasm, nucleotide-binding, transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A* 3a7a_A* 1x2g_A* Probab=56.80 E-value=4.8 Score=16.14 Aligned_cols=56 Identities=11% Similarity=0.185 Sum_probs=32.4 Q ss_pred CCCCEEEEEEECCCCCCCEEECCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHH Q ss_conf 344046655412333220110033334320033210010010000000123444566677 Q gi|254780772|r 348 FAKRIVDIEYLIDQGSPLYVKRIEIEGNDQSYDSVIRRELELSEGDPINYSMIERAKRRI 407 (781) Q Consensus 348 ~~~~~vdi~~~I~eg~~~~i~~I~I~GN~~T~d~VIrrel~~~~Gd~~~~~~i~~s~~~L 407 (781) ...+++.+.+.|..|. |.+|.|.|-.-..+ .|..--..-.|.+|+...+.+....+ T Consensus 259 ~~~g~v~v~~~v~~G~---I~~~~i~gD~~~~~-~~~~l~~~L~G~~~~~~~i~~~l~~~ 314 (337) T 3a7r_A 259 FTWGGVELHFDVEKGH---ITRAQVFTDSLNPA-PLEALAGRLQGCLYRADMLQQECEAL 314 (337) T ss_dssp ETTEEEEEEEEEETTE---EEEEEEEECCSCCH-HHHHHHHHTTTCBSSHHHHHHHHHHT T ss_pred CCCCEEEEEEEEECCE---EEEEEEECCCCCCH-HHHHHHHHHCCCCCCHHHHHHHHHHH T ss_conf 6785499999985999---99999976778721-49999998779988999999999998 No 16 >2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} PDB: 3a7u_A Probab=41.19 E-value=11 Score=13.83 Aligned_cols=25 Identities=12% Similarity=0.169 Sum_probs=16.4 Q ss_pred CCCCEEEEEEECCCCCCCEEECCCCCCC Q ss_conf 3440466554123332201100333343 Q gi|254780772|r 348 FAKRIVDIEYLIDQGSPLYVKRIEIEGN 375 (781) Q Consensus 348 ~~~~~vdi~~~I~eg~~~~i~~I~I~GN 375 (781) ...+++++.+.|..|. |.++.|.|. T Consensus 265 ~~~g~i~v~l~v~~G~---I~~~~i~gd 289 (347) T 2e5a_A 265 QSHVEIKVFIDVKNGR---IEVCNIEAP 289 (347) T ss_dssp -CEEEEEEEEEEETTE---EEEEEEECC T ss_pred CCCEEEEEEEEEECCE---EEEEEEEEC T ss_conf 6745899999996999---999999942 No 17 >1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Probab=37.26 E-value=11 Score=13.82 Aligned_cols=17 Identities=18% Similarity=0.294 Sum_probs=10.0 Q ss_pred CHHHHHHHC-CCCCCCCC Q ss_conf 988999974-87898826 Q gi|254780772|r 60 GKEVILSRI-PVVVGQSI 76 (781) Q Consensus 60 ~~~~i~~~~-~~~~G~~~ 76 (781) +.++|...+ ..+|||.+ T Consensus 30 ~~~tiq~Ai~~a~PGDtI 47 (506) T 1dbg_A 30 SNETLYQVVKEVKPGGLV 47 (506) T ss_dssp SHHHHHHHHHHCCTTCEE T ss_pred CHHHHHHHHHCCCCCCEE T ss_conf 858999999708999999 No 18 >1vqz_A Lipoate-protein ligase, putative; NP_345629.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.99A {Streptococcus pneumoniae TIGR4} SCOP: d.224.1.3 d.104.1.3 Probab=34.24 E-value=13 Score=13.23 Aligned_cols=61 Identities=18% Similarity=0.294 Sum_probs=32.8 Q ss_pred CCCCEEEEEEECCCCCCCEEECCCCCCCCCCCCCCCHHHC-CCCCCCHHHHHHHHHHHHHHHHHHCC Q ss_conf 3440466554123332201100333343200332100100-10000000123444566677651012 Q gi|254780772|r 348 FAKRIVDIEYLIDQGSPLYVKRIEIEGNDQSYDSVIRREL-ELSEGDPINYSMIERAKRRIMATGYF 413 (781) Q Consensus 348 ~~~~~vdi~~~I~eg~~~~i~~I~I~GN~~T~d~VIrrel-~~~~Gd~~~~~~i~~s~~~L~~lg~F 413 (781) ...+++++.+.|..|. |.+|.|.|---..+. + .++ ....|-.|+...+.+....+.-..+| T Consensus 266 ~~~G~v~v~~~v~~g~---I~~i~i~gDf~~~~~-~-~~l~~~L~G~~~~~~~i~~~l~~~~~~~~~ 327 (341) T 1vqz_A 266 FTSGKVEVFANVTESK---IQDIKIYGDFFGIED-V-AAVEDVLRGVKYEREDVLKALKTIDITRYF 327 (341) T ss_dssp ETTEEEEEEEEEETTE---EEEEEEEESCCCSSC-T-HHHHHHHTTCBSSHHHHHHHHTTSCGGGTS T ss_pred CCCCEEEEEEEEECCE---EEEEEEECCCCCHHH-H-HHHHHHHCCCCCCHHHHHHHHHHCCHHHHH T ss_conf 2685699999994799---999999877887345-9-999998679988899999999734477776 No 19 >1p4t_A Outer membrane protein NSPA; beta barrel; HET: CXE; 2.55A {Neisseria meningitidis} SCOP: f.4.1.1 Probab=31.29 E-value=16 Score=12.82 Aligned_cols=26 Identities=8% Similarity=0.045 Sum_probs=14.5 Q ss_pred CCEEEEEEEEEEEE-CCCCCEEEEEEE Q ss_conf 64247999999975-570015899887 Q gi|254780772|r 735 SFWRVSTGVEIMWN-SPLGMMGVYYGI 760 (781) Q Consensus 735 ~~~r~s~G~Glr~~-tP~Gpirld~a~ 760 (781) ..+...+|+|+.|. +|--.++++|-| T Consensus 104 ~~~~~~~g~G~~y~~~~~~~~~~ey~y 130 (155) T 1p4t_A 104 TSIGLGVLTGVSYAVTPNVDLDAGYRY 130 (155) T ss_dssp CEEEEEEEEEEEEEEETTEEEEEEEEE T ss_pred CEEEEEEEEEEEEEECCCEEEEEEEEE T ss_conf 506047511499971789999999999 No 20 >2k4v_A Uncharacterized protein PA1076; structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} Probab=30.58 E-value=9 Score=14.36 Aligned_cols=20 Identities=35% Similarity=0.642 Sum_probs=15.7 Q ss_pred CHHHCCCCCCCHHHHHHHHH Q ss_conf 00100100000001234445 Q gi|254780772|r 383 IRRELELSEGDPINYSMIER 402 (781) Q Consensus 383 Irrel~~~~Gd~~~~~~i~~ 402 (781) ||.+|.++|||+.+...+++ T Consensus 102 IR~KL~~kpGdpV~~ehle~ 121 (125) T 2k4v_A 102 IRAKLHAHPGEPVDLERIIR 121 (125) T ss_dssp HHHHHHSSCCCCCTHHHHHC T ss_pred HHHHCCCCCCCCCCHHHHHC T ss_conf 99980899999878756430 No 21 >1orm_A Outer membrane protein X; OMPX, trosy, DHPC, detergents, lipids, micelles; NMR {Escherichia coli} SCOP: f.4.1.1 PDB: 1q9f_A 1q9g_A 1qj8_A* 1qj9_A Probab=30.48 E-value=3.6 Score=16.95 Aligned_cols=18 Identities=17% Similarity=0.359 Sum_probs=7.1 Q ss_pred EEEEEEECCCCEEEEECC Q ss_conf 245542025430235404 Q gi|254780772|r 526 AVRMIVPITESISTSFKY 543 (781) Q Consensus 526 ~~~~~~~~~~~~~~~~~~ 543 (781) ++++.+.+++++.+.+.| T Consensus 110 G~Gvey~lt~n~~~~~eY 127 (148) T 1orm_A 110 GAGLQFNPMENVALDFSY 127 (148) T ss_dssp CCCCCCCCSSSCBCCCCC T ss_pred ECEEEEEECCCEEEEEEE T ss_conf 130899865887999999 No 22 >3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Probab=29.51 E-value=17 Score=12.62 Aligned_cols=25 Identities=8% Similarity=0.267 Sum_probs=12.3 Q ss_pred HHHHHHHHHHHHCCCCCEEEEEEEC Q ss_conf 9999999999967980038999869 Q gi|254780772|r 79 ADLDHAVKNIYAMGYFSNVKIKIVD 103 (781) Q Consensus 79 ~~i~~~i~~l~~~g~F~~v~~~~~~ 103 (781) ..+.+++++|+..+.|+||.+..++ T Consensus 19 ~~l~~~l~~l~~~~~~sDv~i~~~~ 43 (172) T 3htm_A 19 CRLADELGGLWENSRFTDCCLCVAG 43 (172) T ss_dssp CCHHHHHHHHHHHTCSCCEEEEETT T ss_pred HHHHHHHHHHHHCCCCCEEEEEECC T ss_conf 8899999999848998018999999 No 23 >3h0d_A CTSR; protein DNA complex, winged HTH domain, 4-helix bundle, DNA tandem repeat, transcription/DNA complex; HET: DNA; 2.40A {Bacillus stearothermophilus} Probab=23.98 E-value=21 Score=11.98 Aligned_cols=10 Identities=40% Similarity=0.780 Sum_probs=4.4 Q ss_pred HHHHHHHHHH Q ss_conf 8888754232 Q gi|254780772|r 245 RAFYHDRGYA 254 (781) Q Consensus 245 ~~~Y~~~GY~ 254 (781) +.|=..+||+ T Consensus 47 TRFT~e~GY~ 56 (155) T 3h0d_A 47 TRFTLERGYI 56 (155) T ss_dssp HHSSGGGTEE T ss_pred CCCCCCCCEE T ss_conf 6646988848 No 24 >2sak_A Staphylokinase; plasminogen activation, fibrinolysis, hydrolase, plasminogen activator; 1.80A {Staphylococcus aureus} SCOP: d.15.5.1 PDB: 1bui_C* Probab=20.99 E-value=22 Score=11.78 Aligned_cols=44 Identities=23% Similarity=0.294 Sum_probs=25.2 Q ss_pred CCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHH-HHHHH--HCCCCCCC Q ss_conf 343200332100100100000001234445666-77651--01234453 Q gi|254780772|r 373 EGNDQSYDSVIRRELELSEGDPINYSMIERAKR-RIMAT--GYFSEVNI 418 (781) Q Consensus 373 ~GN~~T~d~VIrrel~~~~Gd~~~~~~i~~s~~-~L~~l--g~F~~V~i 418 (781) .||....++.+ ++++++|+.++...|.+-.+ .|... +-|+-|.+ T Consensus 20 ~g~~il~P~Y~--ei~l~~G~tl~k~eil~~Vq~~idas~~~~fkvV~~ 66 (121) T 2sak_A 20 KGNELLSPHYV--EFPIKPGTTLTKEKIEYYVEWALDATAYKEFRVVEL 66 (121) T ss_dssp TCCEEEEEEEE--EEECCTTCEECHHHHHHHHHHHHTTSTTTTCEEEEE T ss_pred CCCEEECCCCE--EEECCCCCEECHHHHHHHHHHHHHHHHCCCEEEEEC T ss_conf 99889555207--886476846369999999998743310463578851 No 25 >1c76_A Staphylokinase, SAK; beta-grAsp family, hydrolase; 2.25A {Staphylococcus aureus} SCOP: d.15.5.1 PDB: 1c77_A 1c78_A 1c79_A 1ssn_A Probab=20.62 E-value=24 Score=11.60 Aligned_cols=44 Identities=23% Similarity=0.294 Sum_probs=25.7 Q ss_pred CCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHH-HHHHH--HCCCCCCC Q ss_conf 343200332100100100000001234445666-77651--01234453 Q gi|254780772|r 373 EGNDQSYDSVIRRELELSEGDPINYSMIERAKR-RIMAT--GYFSEVNI 418 (781) Q Consensus 373 ~GN~~T~d~VIrrel~~~~Gd~~~~~~i~~s~~-~L~~l--g~F~~V~i 418 (781) .||....++.+ ++++.+|+.++...|.+-.+ .|... +-|+-|.+ T Consensus 35 ~g~~il~P~Y~--ei~L~~G~tltkeeil~~Vq~~idas~~~~fkvV~~ 81 (136) T 1c76_A 35 KGNELLSPHYV--EFPIKPGTTLTKEKIEYYVEWALDATAYKEFRVVEL 81 (136) T ss_dssp TCCEEECCCCE--EEECCTTCEECHHHHHHHHHHHHTTSTTTTEEEEEE T ss_pred CCCEEECCCCE--EEECCCCCEECHHHHHHHHHHHHHHHHCCCEEEEEC T ss_conf 99889545207--886476846269999999998643310463478851 No 26 >2rdq_A 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II)/alpha-ketoglutarate dependent...; double stranded barrel helix, dioxygenase; HET: AKG; 1.31A {Streptomyces avermitilis} PDB: 2rdn_A* 2rdr_A* 2rds_A* Probab=20.48 E-value=24 Score=11.53 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=19.8 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 6643102333345788888875423221 Q gi|254780772|r 229 TDVYSKERMSFDEEAIRAFYHDRGYAAV 256 (781) Q Consensus 229 ~~~~~~~~l~~D~~~l~~~Y~~~GY~d~ 256 (781) .+.++-..+..|.+.|+++|+++||+=+ T Consensus 9 ~~~~d~~~~~~d~~~l~~~f~~~Gyvvi 36 (288) T 2rdq_A 9 GDYTDCTPLLGDRAALDSFYEEHGYLFL 36 (288) T ss_dssp BCCCCCGGGTTCHHHHHHHHHHHSEEEE T ss_pred CCCCCCCCCCCCHHHHHHHHHHCCEEEC T ss_conf 6744478889999999999984998983 No 27 >1txl_A Metal-binding protein YODA; E.coli, structural genomics, NEW fold, PSI, protein structure initiative; 1.70A {Escherichia coli} SCOP: b.60.1.4 PDB: 1s7d_A 1oej_A 1oee_A 1oek_A Probab=20.04 E-value=25 Score=11.47 Aligned_cols=11 Identities=45% Similarity=1.217 Sum_probs=4.3 Q ss_pred HHHHHHHHHHHH Q ss_conf 788888875423 Q gi|254780772|r 242 EAIRAFYHDRGY 253 (781) Q Consensus 242 ~~l~~~Y~~~GY 253 (781) +..+.+|.. || T Consensus 90 eeyK~yY~~-gY 100 (215) T 1txl_A 90 AEIKDYYHK-GY 100 (215) T ss_dssp HHHHHHHHH-HH T ss_pred HHHHHHHHC-CC T ss_conf 999999862-34 Done!