Query         gi|254780772|ref|YP_003065185.1| surface antigen (D15) [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 781
No_of_seqs    308 out of 3546
Neff          8.7 
Searched_HMMs 13730
Date          Wed Jun  1 07:41:22 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780772.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1x2ga1 d.224.1.3 (A:247-337)   69.2     1.1 8.3E-05   18.7   2.0   53  270-327    17-69  (91)
  2 d1vqza1 d.224.1.3 (A:242-329)   60.1     3.1 0.00022   15.9   2.8   12  351-362    16-27  (88)
  3 d2fnaa1 a.4.5.11 (A:284-356) H  59.4     2.2 0.00016   16.8   2.0   36   61-96     21-56  (73)
  4 d1qj8a_ f.4.1.1 (A:) Outer mem  55.3     3.8 0.00028   15.2   9.9   44  736-781   104-148 (148)
  5 d1txla_ b.60.1.4 (A:) Hypothet  29.7     9.5 0.00069   12.6   2.2   13  241-254    62-74  (188)
  6 d1p4ta_ f.4.1.1 (A:) Outer mem  28.3      10 0.00073   12.5   9.8   25  736-760   105-130 (155)
  7 d2saka_ d.15.5.1 (A:) Staphylo  21.1      13 0.00093   11.8   0.7   44  373-418    20-66  (121)
  8 d1t6sa1 a.4.5.60 (A:1-85) Segr  15.6      18  0.0013   10.8   1.8   40  120-163    16-55  (85)
  9 d2gcxa1 b.34.1.2 (A:1-75) Ferr  14.9      18  0.0013   10.9   0.2   18  404-421    23-40  (75)
 10 d1t16a_ f.4.3.4 (A:) Long-chai  12.9      22  0.0016   10.3   9.7  157  422-584   253-422 (427)

No 1  
>d1x2ga1 d.224.1.3 (A:247-337) Two-domain LplA, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=69.25  E-value=1.1  Score=18.67  Aligned_cols=53  Identities=19%  Similarity=0.361  Sum_probs=22.3

Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEECCCCCCHHHHHCC
Q ss_conf             5410122022221000001233344455767777532116996211210000000000
Q gi|254780772|r  270 GYVLIFQIDEGEIYTVGNISIQSTLQEIQKKTLLSLIRIRSGNLYNPQEIKESSEKIS  327 (781)
Q Consensus       270 ~~~i~~~I~EG~~y~i~~i~i~g~~~~~~~~~l~~~~~~k~G~~~~~~~~~~~~~~i~  327 (781)
                      .+.+.++|..|   +|.++.+.|+.  +....+..+-..-.|-+|+...+.+.++.+.
T Consensus        17 ~ve~~l~V~~G---~I~~~~i~gDf--l~~~~i~~le~~L~G~~y~~~~i~~~l~~~~   69 (91)
T d1x2ga1          17 GVELHFDVEKG---HITRAQVFTDS--LNPAPLEALAGRLQGCLYRADMLQQECEALL   69 (91)
T ss_dssp             EEEEEEEEETT---EEEEEEEEECC--SCCHHHHHHHHHHTTCBSSHHHHHHHHHHTG
T ss_pred             EEEEEEEEECC---EEEEEEEECCC--CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf             69999997279---89899998688--9927899999997699868999999999987


No 2  
>d1vqza1 d.224.1.3 (A:242-329) LplA-like protein SP1160, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=60.05  E-value=3.1  Score=15.87  Aligned_cols=12  Identities=8%  Similarity=0.063  Sum_probs=4.7

Q ss_pred             CEEEEEEECCCC
Q ss_conf             046655412333
Q gi|254780772|r  351 RIVDIEYLIDQG  362 (781)
Q Consensus       351 ~~vdi~~~I~eg  362 (781)
                      ++|++.++|..|
T Consensus        16 G~vev~l~V~~G   27 (88)
T d1vqza1          16 GKVEVFANVTES   27 (88)
T ss_dssp             EEEEEEEEEETT
T ss_pred             CEEEEEEEEECC
T ss_conf             679999998189


No 3  
>d2fnaa1 a.4.5.11 (A:284-356) Hypothetical protein SSO1545, C-terminal domain {Sulfolobus solfataricus [TaxId: 2287]}
Probab=59.37  E-value=2.2  Score=16.75  Aligned_cols=36  Identities=11%  Similarity=0.180  Sum_probs=29.6

Q ss_pred             HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf             889999748789882688999999999996798003
Q gi|254780772|r   61 KEVILSRIPVVVGQSISDADLDHAVKNIYAMGYFSN   96 (781)
Q Consensus        61 ~~~i~~~~~~~~G~~~~~~~i~~~i~~l~~~g~F~~   96 (781)
                      =+.|+..+..+.|.++++..++..+++|-++||...
T Consensus        21 Ws~IK~yle~~~G~~I~d~~ls~lL~nL~k~~~iek   56 (73)
T d2fnaa1          21 WSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIK   56 (73)
T ss_dssp             HHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEE
T ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEE
T ss_conf             999999999970887885899999999987576451


No 4  
>d1qj8a_ f.4.1.1 (A:) Outer membrane protein X (OMPX) {Escherichia coli [TaxId: 562]}
Probab=55.25  E-value=3.8  Score=15.24  Aligned_cols=44  Identities=14%  Similarity=0.160  Sum_probs=26.7

Q ss_pred             CEEEEEEEEEEEE-CCCCCEEEEEEEECCCCCCCEEEEEEEEEEECC
Q ss_conf             4247999999975-570015899887226778760258999641059
Q gi|254780772|r  736 FWRVSTGVEIMWN-SPLGMMGVYYGIPLRHREGDKIQQFGFRIGNRM  781 (781)
Q Consensus       736 ~~r~s~G~Glr~~-tP~Gpirld~a~pl~~~~~D~~~~f~FsiG~~f  781 (781)
                      ..-+.+|+|+.|. +|=--+|++|=+-  +-...+...|.+.+|-||
T Consensus       104 ~~g~~~G~Gvey~l~~n~~~~~eY~~~--~~~~~d~~~~~~Gv~YrF  148 (148)
T d1qj8a_         104 DYGFSYGAGLQFNPMENVALDFSYEQS--RIRSVDVGTWIAGVGYRF  148 (148)
T ss_dssp             EEEEEEEEEEEECSSTTEEEEEEEEEE--EETTEEEEEEEEEEEEEC
T ss_pred             CCCEEEEEEEEEEECCCEEEEEEEEEE--ECCCCEEEEEEEEEEEEC
T ss_conf             444469621799806887999999997--479943306999989889


No 5  
>d1txla_ b.60.1.4 (A:) Hypothetical protein YodA {Escherichia coli [TaxId: 562]}
Probab=29.73  E-value=9.5  Score=12.65  Aligned_cols=13  Identities=46%  Similarity=0.991  Sum_probs=7.0

Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             57888888754232
Q gi|254780772|r  241 EEAIRAFYHDRGYA  254 (781)
Q Consensus       241 ~~~l~~~Y~~~GY~  254 (781)
                      .+..+.+|.. ||.
T Consensus        62 ~eeyK~yY~~-gY~   74 (188)
T d1txla_          62 FAEIKDYYHK-GYA   74 (188)
T ss_dssp             HHHHHHHHHH-HHC
T ss_pred             HHHHHHHHHC-CCC
T ss_conf             9999999861-343


No 6  
>d1p4ta_ f.4.1.1 (A:) Outer membrane protein NspA {Neisseria meningitidis [TaxId: 487]}
Probab=28.30  E-value=10  Score=12.49  Aligned_cols=25  Identities=8%  Similarity=0.026  Sum_probs=14.6

Q ss_pred             CEEEEEEEEEEEE-CCCCCEEEEEEE
Q ss_conf             4247999999975-570015899887
Q gi|254780772|r  736 FWRVSTGVEIMWN-SPLGMMGVYYGI  760 (781)
Q Consensus       736 ~~r~s~G~Glr~~-tP~Gpirld~a~  760 (781)
                      .+.+.+|+|+.|. +|--.++++|-|
T Consensus       105 ~~~~~~g~G~~y~lt~n~~~~~eyry  130 (155)
T d1p4ta_         105 SIGLGVLTGVSYAVTPNVDLDAGYRY  130 (155)
T ss_dssp             EEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred             CEEEEEEEEEEEEECCCEEEEEEEEE
T ss_conf             36258998999993599899999999


No 7  
>d2saka_ d.15.5.1 (A:) Staphylokinase {Staphylococcus aureus [TaxId: 1280]}
Probab=21.06  E-value=13  Score=11.79  Aligned_cols=44  Identities=23%  Similarity=0.294  Sum_probs=25.2

Q ss_pred             CCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHH-HHHHH--HCCCCCCC
Q ss_conf             343200332100100100000001234445666-77651--01234453
Q gi|254780772|r  373 EGNDQSYDSVIRRELELSEGDPINYSMIERAKR-RIMAT--GYFSEVNI  418 (781)
Q Consensus       373 ~GN~~T~d~VIrrel~~~~Gd~~~~~~i~~s~~-~L~~l--g~F~~V~i  418 (781)
                      .||....++.+  ++++++|+.++...|.+-.+ .|...  +-|+-|.+
T Consensus        20 ~g~~il~P~Y~--ei~l~~G~tl~k~eil~~Vq~~idas~~~~fkvV~~   66 (121)
T d2saka_          20 KGNELLSPHYV--EFPIKPGTTLTKEKIEYYVEWALDATAYKEFRVVEL   66 (121)
T ss_dssp             TCCEEEEEEEE--EEECCTTCEECHHHHHHHHHHHHTTSTTTTCEEEEE
T ss_pred             CCCEEECCCCE--EEECCCCCEECHHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf             99889555207--886476846369999999998743310463578851


No 8  
>d1t6sa1 a.4.5.60 (A:1-85) Segregation and condensation protein B, ScpB {Chlorobium tepidum [TaxId: 1097]}
Probab=15.61  E-value=18  Score=10.80  Aligned_cols=40  Identities=15%  Similarity=0.346  Sum_probs=21.8

Q ss_pred             EEECCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             99565436988998873005786379999999999999999972
Q gi|254780772|r  120 FFSGNNNLKDDQLKMIVRSRSAAAYDEDTVNADVHNIKQAYASI  163 (781)
Q Consensus       120 ~~~Gn~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~i~~~y~~~  163 (781)
                      .|...+-++.++|.+.++    ...++..+.+....|++.|.+.
T Consensus        16 LFas~~Pls~~~L~~~l~----~~~~~~~i~~~l~~L~~~y~~~   55 (85)
T d1t6sa1          16 IFSSEEPVNLQTLSQITA----HKFTPSELQEAVDELNRDYEAT   55 (85)
T ss_dssp             HHHCSSCBCHHHHHHHTT----CCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCCCCHHHHHHHHC----CCCCHHHHHHHHHHHHHHHHCC
T ss_conf             995489989999999875----5899999999999999998507


No 9  
>d2gcxa1 b.34.1.2 (A:1-75) Ferrous iron transport protein A, FeoA {Klebsiella pneumoniae [TaxId: 573]}
Probab=14.86  E-value=18  Score=10.86  Aligned_cols=18  Identities=6%  Similarity=0.396  Sum_probs=10.1

Q ss_pred             HHHHHHHHCCCCCCCCCC
Q ss_conf             667765101234453325
Q gi|254780772|r  404 KRRIMATGYFSEVNISQL  421 (781)
Q Consensus       404 ~~~L~~lg~F~~V~i~~~  421 (781)
                      ++||..+|+.....++..
T Consensus        23 ~~RL~~mGl~pG~~V~v~   40 (75)
T d2gcxa1          23 RQKLLSLGMLPGSSFHVV   40 (75)
T ss_dssp             HHHHTTTTCCSSEEEEEC
T ss_pred             HHHHHHCCCCCCCEEEEE
T ss_conf             999997699999899999


No 10 
>d1t16a_ f.4.3.4 (A:) Long-chain fatty acid transport protein FadL {Escherichia coli [TaxId: 562]}
Probab=12.88  E-value=22  Score=10.31  Aligned_cols=157  Identities=8%  Similarity=-0.036  Sum_probs=0.0

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCC------CCCCCCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf             4435654310233221122111111111223321100000111233------3234422003787411221111345411
Q gi|254780772|r  422 PANDVSDYVILRVSVKQLSAGSVGIATNYEVDKGMGVEGHIDDNNF------FGQGYRARLAAGFGRHAVQNYTFSVEDP  495 (781)
Q Consensus       422 ~~~~~~~~vdl~i~v~E~~tg~~~~g~gys~~~g~~~~~~~~~~Nl------~G~G~~l~l~~~~~~~~~~~~~~s~~~P  495 (781)
                      .....+.......+..-+-+..+++|+.|.-...+.+.+.+...++      ................-.-...+..--=
T Consensus       253 ~~~~~~~~~~~~~~~~~~lP~~~~~G~~~~~~~~~~l~~d~~~~~ws~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e  332 (427)
T d1t16a_         253 PIPTATGGATQSGYLTLNLPEMWEVSGYNRVDPQWAIHYSLAYTSWSQFQQLKATSTSGDTLFQKHEGFKDAYRIALGTT  332 (427)
T ss_dssp             SSCCCCTTCCEEEEEEEEECCEEEEEEEEEEETTEEEEEEEEEECGGGCCEEEEECTTSCEEEEEECCCCCEEEEEEEEE
T ss_pred             CCCCCCCCCCCCCEEEECCCCEEEEEEEEEECCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEE
T ss_conf             44444444355531356578589999999725651688721321110001333345777533322335331489998789


Q ss_pred             CCCCCCCCCCCCCCCC-------CCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCEEEEEEECCCCCCCCCHHHHHHHC
Q ss_conf             2357775431001111-------333333432333202455420254302354041257764014675442011122101
Q gi|254780772|r  496 YFLGSPISAGFDLQKT-------HLEDGSLDINDESAAVRMIVPITESISTSFKYDLRFLQYGAISEKEKIPSIYTTLIE  568 (781)
Q Consensus       496 ~~~~~~~s~~~~~~~~-------~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  568 (781)
                      |-....+++...+.+.       ......-+..+..+++++++++.+.+.+.++|.+.+.+      .............
T Consensus       333 y~~~~~l~lR~Gy~y~~~~~~~~~~~~~~p~~~~~~~s~G~~~~~~~~~~id~a~~y~~~~------~~~~~~~~~~~~~  406 (427)
T d1t16a_         333 YYYDDNWTFRTGIAFDDSPVPAQNRSISIPDQDRFWLSAGTTYAFNKDASVDVGVSYMHGQ------SVKINEGPYQFES  406 (427)
T ss_dssp             ECCSSSEEEEEEEEEECCSSCTTTCCSSSCCCCEEEEEEEEEEESSSSEEEEEEEEEEEEC------CEEEEETTEEEEE
T ss_pred             EEECCCEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEEEEEECC------CCCCCCCCCEEEE
T ss_conf             9835669999999974677776554643467898899988989848986999999999747------5310267300478


Q ss_pred             CCCCEEEEEEEEECCC
Q ss_conf             5850246788432155
Q gi|254780772|r  569 HGKFSSHSISQSIIYN  584 (781)
Q Consensus       569 ~~~~~~~~i~~~l~~d  584 (781)
                      ........+++++.++
T Consensus       407 ~~~~~~~~~~~~y~F~  422 (427)
T d1t16a_         407 EGKAWLFGTNFNYAFH  422 (427)
T ss_dssp             EEEEEEEEEEEEEECC
T ss_pred             EEEEEEEEEEEEEEEC
T ss_conf             8789999999999958


Done!