Query gi|254780772|ref|YP_003065185.1| surface antigen (D15) [Candidatus Liberibacter asiaticus str. psy62] Match_columns 781 No_of_seqs 308 out of 3546 Neff 8.7 Searched_HMMs 13730 Date Wed Jun 1 07:41:22 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780772.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1x2ga1 d.224.1.3 (A:247-337) 69.2 1.1 8.3E-05 18.7 2.0 53 270-327 17-69 (91) 2 d1vqza1 d.224.1.3 (A:242-329) 60.1 3.1 0.00022 15.9 2.8 12 351-362 16-27 (88) 3 d2fnaa1 a.4.5.11 (A:284-356) H 59.4 2.2 0.00016 16.8 2.0 36 61-96 21-56 (73) 4 d1qj8a_ f.4.1.1 (A:) Outer mem 55.3 3.8 0.00028 15.2 9.9 44 736-781 104-148 (148) 5 d1txla_ b.60.1.4 (A:) Hypothet 29.7 9.5 0.00069 12.6 2.2 13 241-254 62-74 (188) 6 d1p4ta_ f.4.1.1 (A:) Outer mem 28.3 10 0.00073 12.5 9.8 25 736-760 105-130 (155) 7 d2saka_ d.15.5.1 (A:) Staphylo 21.1 13 0.00093 11.8 0.7 44 373-418 20-66 (121) 8 d1t6sa1 a.4.5.60 (A:1-85) Segr 15.6 18 0.0013 10.8 1.8 40 120-163 16-55 (85) 9 d2gcxa1 b.34.1.2 (A:1-75) Ferr 14.9 18 0.0013 10.9 0.2 18 404-421 23-40 (75) 10 d1t16a_ f.4.3.4 (A:) Long-chai 12.9 22 0.0016 10.3 9.7 157 422-584 253-422 (427) No 1 >d1x2ga1 d.224.1.3 (A:247-337) Two-domain LplA, C-terminal domain {Escherichia coli [TaxId: 562]} Probab=69.25 E-value=1.1 Score=18.67 Aligned_cols=53 Identities=19% Similarity=0.361 Sum_probs=22.3 Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEECCCCCCHHHHHCC Q ss_conf 5410122022221000001233344455767777532116996211210000000000 Q gi|254780772|r 270 GYVLIFQIDEGEIYTVGNISIQSTLQEIQKKTLLSLIRIRSGNLYNPQEIKESSEKIS 327 (781) Q Consensus 270 ~~~i~~~I~EG~~y~i~~i~i~g~~~~~~~~~l~~~~~~k~G~~~~~~~~~~~~~~i~ 327 (781) .+.+.++|..| +|.++.+.|+. +....+..+-..-.|-+|+...+.+.++.+. T Consensus 17 ~ve~~l~V~~G---~I~~~~i~gDf--l~~~~i~~le~~L~G~~y~~~~i~~~l~~~~ 69 (91) T d1x2ga1 17 GVELHFDVEKG---HITRAQVFTDS--LNPAPLEALAGRLQGCLYRADMLQQECEALL 69 (91) T ss_dssp EEEEEEEEETT---EEEEEEEEECC--SCCHHHHHHHHHHTTCBSSHHHHHHHHHHTG T ss_pred EEEEEEEEECC---EEEEEEEECCC--CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHH T ss_conf 69999997279---89899998688--9927899999997699868999999999987 No 2 >d1vqza1 d.224.1.3 (A:242-329) LplA-like protein SP1160, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Probab=60.05 E-value=3.1 Score=15.87 Aligned_cols=12 Identities=8% Similarity=0.063 Sum_probs=4.7 Q ss_pred CEEEEEEECCCC Q ss_conf 046655412333 Q gi|254780772|r 351 RIVDIEYLIDQG 362 (781) Q Consensus 351 ~~vdi~~~I~eg 362 (781) ++|++.++|..| T Consensus 16 G~vev~l~V~~G 27 (88) T d1vqza1 16 GKVEVFANVTES 27 (88) T ss_dssp EEEEEEEEEETT T ss_pred CEEEEEEEEECC T ss_conf 679999998189 No 3 >d2fnaa1 a.4.5.11 (A:284-356) Hypothetical protein SSO1545, C-terminal domain {Sulfolobus solfataricus [TaxId: 2287]} Probab=59.37 E-value=2.2 Score=16.75 Aligned_cols=36 Identities=11% Similarity=0.180 Sum_probs=29.6 Q ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCE Q ss_conf 889999748789882688999999999996798003 Q gi|254780772|r 61 KEVILSRIPVVVGQSISDADLDHAVKNIYAMGYFSN 96 (781) Q Consensus 61 ~~~i~~~~~~~~G~~~~~~~i~~~i~~l~~~g~F~~ 96 (781) =+.|+..+..+.|.++++..++..+++|-++||... T Consensus 21 Ws~IK~yle~~~G~~I~d~~ls~lL~nL~k~~~iek 56 (73) T d2fnaa1 21 WSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIK 56 (73) T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEE T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEE T ss_conf 999999999970887885899999999987576451 No 4 >d1qj8a_ f.4.1.1 (A:) Outer membrane protein X (OMPX) {Escherichia coli [TaxId: 562]} Probab=55.25 E-value=3.8 Score=15.24 Aligned_cols=44 Identities=14% Similarity=0.160 Sum_probs=26.7 Q ss_pred CEEEEEEEEEEEE-CCCCCEEEEEEEECCCCCCCEEEEEEEEEEECC Q ss_conf 4247999999975-570015899887226778760258999641059 Q gi|254780772|r 736 FWRVSTGVEIMWN-SPLGMMGVYYGIPLRHREGDKIQQFGFRIGNRM 781 (781) Q Consensus 736 ~~r~s~G~Glr~~-tP~Gpirld~a~pl~~~~~D~~~~f~FsiG~~f 781 (781) ..-+.+|+|+.|. +|=--+|++|=+- +-...+...|.+.+|-|| T Consensus 104 ~~g~~~G~Gvey~l~~n~~~~~eY~~~--~~~~~d~~~~~~Gv~YrF 148 (148) T d1qj8a_ 104 DYGFSYGAGLQFNPMENVALDFSYEQS--RIRSVDVGTWIAGVGYRF 148 (148) T ss_dssp EEEEEEEEEEEECSSTTEEEEEEEEEE--EETTEEEEEEEEEEEEEC T ss_pred CCCEEEEEEEEEEECCCEEEEEEEEEE--ECCCCEEEEEEEEEEEEC T ss_conf 444469621799806887999999997--479943306999989889 No 5 >d1txla_ b.60.1.4 (A:) Hypothetical protein YodA {Escherichia coli [TaxId: 562]} Probab=29.73 E-value=9.5 Score=12.65 Aligned_cols=13 Identities=46% Similarity=0.991 Sum_probs=7.0 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 57888888754232 Q gi|254780772|r 241 EEAIRAFYHDRGYA 254 (781) Q Consensus 241 ~~~l~~~Y~~~GY~ 254 (781) .+..+.+|.. ||. T Consensus 62 ~eeyK~yY~~-gY~ 74 (188) T d1txla_ 62 FAEIKDYYHK-GYA 74 (188) T ss_dssp HHHHHHHHHH-HHC T ss_pred HHHHHHHHHC-CCC T ss_conf 9999999861-343 No 6 >d1p4ta_ f.4.1.1 (A:) Outer membrane protein NspA {Neisseria meningitidis [TaxId: 487]} Probab=28.30 E-value=10 Score=12.49 Aligned_cols=25 Identities=8% Similarity=0.026 Sum_probs=14.6 Q ss_pred CEEEEEEEEEEEE-CCCCCEEEEEEE Q ss_conf 4247999999975-570015899887 Q gi|254780772|r 736 FWRVSTGVEIMWN-SPLGMMGVYYGI 760 (781) Q Consensus 736 ~~r~s~G~Glr~~-tP~Gpirld~a~ 760 (781) .+.+.+|+|+.|. +|--.++++|-| T Consensus 105 ~~~~~~g~G~~y~lt~n~~~~~eyry 130 (155) T d1p4ta_ 105 SIGLGVLTGVSYAVTPNVDLDAGYRY 130 (155) T ss_dssp EEEEEEEEEEEEEEETTEEEEEEEEE T ss_pred CEEEEEEEEEEEEECCCEEEEEEEEE T ss_conf 36258998999993599899999999 No 7 >d2saka_ d.15.5.1 (A:) Staphylokinase {Staphylococcus aureus [TaxId: 1280]} Probab=21.06 E-value=13 Score=11.79 Aligned_cols=44 Identities=23% Similarity=0.294 Sum_probs=25.2 Q ss_pred CCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHH-HHHHH--HCCCCCCC Q ss_conf 343200332100100100000001234445666-77651--01234453 Q gi|254780772|r 373 EGNDQSYDSVIRRELELSEGDPINYSMIERAKR-RIMAT--GYFSEVNI 418 (781) Q Consensus 373 ~GN~~T~d~VIrrel~~~~Gd~~~~~~i~~s~~-~L~~l--g~F~~V~i 418 (781) .||....++.+ ++++++|+.++...|.+-.+ .|... +-|+-|.+ T Consensus 20 ~g~~il~P~Y~--ei~l~~G~tl~k~eil~~Vq~~idas~~~~fkvV~~ 66 (121) T d2saka_ 20 KGNELLSPHYV--EFPIKPGTTLTKEKIEYYVEWALDATAYKEFRVVEL 66 (121) T ss_dssp TCCEEEEEEEE--EEECCTTCEECHHHHHHHHHHHHTTSTTTTCEEEEE T ss_pred CCCEEECCCCE--EEECCCCCEECHHHHHHHHHHHHHHHHCCCEEEEEC T ss_conf 99889555207--886476846369999999998743310463578851 No 8 >d1t6sa1 a.4.5.60 (A:1-85) Segregation and condensation protein B, ScpB {Chlorobium tepidum [TaxId: 1097]} Probab=15.61 E-value=18 Score=10.80 Aligned_cols=40 Identities=15% Similarity=0.346 Sum_probs=21.8 Q ss_pred EEECCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHC Q ss_conf 99565436988998873005786379999999999999999972 Q gi|254780772|r 120 FFSGNNNLKDDQLKMIVRSRSAAAYDEDTVNADVHNIKQAYASI 163 (781) Q Consensus 120 ~~~Gn~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~i~~~y~~~ 163 (781) .|...+-++.++|.+.++ ...++..+.+....|++.|.+. T Consensus 16 LFas~~Pls~~~L~~~l~----~~~~~~~i~~~l~~L~~~y~~~ 55 (85) T d1t6sa1 16 IFSSEEPVNLQTLSQITA----HKFTPSELQEAVDELNRDYEAT 55 (85) T ss_dssp HHHCSSCBCHHHHHHHTT----CCCCHHHHHHHHHHHHHHHHHH T ss_pred HHHCCCCCCHHHHHHHHC----CCCCHHHHHHHHHHHHHHHHCC T ss_conf 995489989999999875----5899999999999999998507 No 9 >d2gcxa1 b.34.1.2 (A:1-75) Ferrous iron transport protein A, FeoA {Klebsiella pneumoniae [TaxId: 573]} Probab=14.86 E-value=18 Score=10.86 Aligned_cols=18 Identities=6% Similarity=0.396 Sum_probs=10.1 Q ss_pred HHHHHHHHCCCCCCCCCC Q ss_conf 667765101234453325 Q gi|254780772|r 404 KRRIMATGYFSEVNISQL 421 (781) Q Consensus 404 ~~~L~~lg~F~~V~i~~~ 421 (781) ++||..+|+.....++.. T Consensus 23 ~~RL~~mGl~pG~~V~v~ 40 (75) T d2gcxa1 23 RQKLLSLGMLPGSSFHVV 40 (75) T ss_dssp HHHHTTTTCCSSEEEEEC T ss_pred HHHHHHCCCCCCCEEEEE T ss_conf 999997699999899999 No 10 >d1t16a_ f.4.3.4 (A:) Long-chain fatty acid transport protein FadL {Escherichia coli [TaxId: 562]} Probab=12.88 E-value=22 Score=10.31 Aligned_cols=157 Identities=8% Similarity=-0.036 Sum_probs=0.0 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCC------CCCCCCCCEEEEEEECCCCEEEEEEEEC Q ss_conf 4435654310233221122111111111223321100000111233------3234422003787411221111345411 Q gi|254780772|r 422 PANDVSDYVILRVSVKQLSAGSVGIATNYEVDKGMGVEGHIDDNNF------FGQGYRARLAAGFGRHAVQNYTFSVEDP 495 (781) Q Consensus 422 ~~~~~~~~vdl~i~v~E~~tg~~~~g~gys~~~g~~~~~~~~~~Nl------~G~G~~l~l~~~~~~~~~~~~~~s~~~P 495 (781) .....+.......+..-+-+..+++|+.|.-...+.+.+.+...++ ................-.-...+..--= T Consensus 253 ~~~~~~~~~~~~~~~~~~lP~~~~~G~~~~~~~~~~l~~d~~~~~ws~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e 332 (427) T d1t16a_ 253 PIPTATGGATQSGYLTLNLPEMWEVSGYNRVDPQWAIHYSLAYTSWSQFQQLKATSTSGDTLFQKHEGFKDAYRIALGTT 332 (427) T ss_dssp SSCCCCTTCCEEEEEEEEECCEEEEEEEEEEETTEEEEEEEEEECGGGCCEEEEECTTSCEEEEEECCCCCEEEEEEEEE T ss_pred CCCCCCCCCCCCCEEEECCCCEEEEEEEEEECCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEE T ss_conf 44444444355531356578589999999725651688721321110001333345777533322335331489998789 Q ss_pred CCCCCCCCCCCCCCCC-------CCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCEEEEEEECCCCCCCCCHHHHHHHC Q ss_conf 2357775431001111-------333333432333202455420254302354041257764014675442011122101 Q gi|254780772|r 496 YFLGSPISAGFDLQKT-------HLEDGSLDINDESAAVRMIVPITESISTSFKYDLRFLQYGAISEKEKIPSIYTTLIE 568 (781) Q Consensus 496 ~~~~~~~s~~~~~~~~-------~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (781) |-....+++...+.+. ......-+..+..+++++++++.+.+.+.++|.+.+.+ ............. T Consensus 333 y~~~~~l~lR~Gy~y~~~~~~~~~~~~~~p~~~~~~~s~G~~~~~~~~~~id~a~~y~~~~------~~~~~~~~~~~~~ 406 (427) T d1t16a_ 333 YYYDDNWTFRTGIAFDDSPVPAQNRSISIPDQDRFWLSAGTTYAFNKDASVDVGVSYMHGQ------SVKINEGPYQFES 406 (427) T ss_dssp ECCSSSEEEEEEEEEECCSSCTTTCCSSSCCCCEEEEEEEEEEESSSSEEEEEEEEEEEEC------CEEEEETTEEEEE T ss_pred EEECCCEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEEEEEECC------CCCCCCCCCEEEE T ss_conf 9835669999999974677776554643467898899988989848986999999999747------5310267300478 Q ss_pred CCCCEEEEEEEEECCC Q ss_conf 5850246788432155 Q gi|254780772|r 569 HGKFSSHSISQSIIYN 584 (781) Q Consensus 569 ~~~~~~~~i~~~l~~d 584 (781) ........+++++.++ T Consensus 407 ~~~~~~~~~~~~y~F~ 422 (427) T d1t16a_ 407 EGKAWLFGTNFNYAFH 422 (427) T ss_dssp EEEEEEEEEEEEEECC T ss_pred EEEEEEEEEEEEEEEC T ss_conf 8789999999999958 Done!