RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780772|ref|YP_003065185.1| surface antigen (D15)
[Candidatus Liberibacter asiaticus str. psy62]
         (781 letters)



>gnl|CDD|163210 TIGR03303, OM_YaeT, outer membrane protein assembly complex, YaeT
           protein.  Members of this protein family are the YaeT
           protein of the YaeT/YfiO complex for assembling proteins
           into the outer membrane of Gram-negative bacteria. This
           protein is similar in sequence and function to a
           non-essential paralog, YtfM, that is also in the Omp85
           family. Members of this family typically have five
           tandem copies of the surface antigen variable number
           repeat (pfam07244), followed by an outer membrane
           beta-barrel domain (pfam01103), while the YtfM family
           typically has a single pfam07244 repeat.
          Length = 741

 Score =  566 bits (1460), Expect = e-161
 Identities = 251/748 (33%), Positives = 380/748 (50%), Gaps = 23/748 (3%)

Query: 47  IVRRIEIRGATNVGKEVILSRIPVVVGQSISDADLDHAVKNIYAMGYFSNVKIKIVDSVL 106
           +V+ I + G   V +  +L+ +PV VG +ISD  +D A+K +YA GYF +VKI+    VL
Sbjct: 2   VVKDIRVEGLQRVSEGTVLNYLPVKVGDTISDEKIDEAIKALYATGYFEDVKIEREGGVL 61

Query: 107 IIDLIERKIINHLFFSGNNNLKDDQLKMIVRS-RSAAAYDEDTVNADVHNIKQAYASIGY 165
           +I + ER IIN + FSGN  +K DQLK  +   +    ++   +  D   +K+ Y S G 
Sbjct: 62  VIKVKERPIINSIVFSGNKEIKKDQLKKALVGIKKGEIFNRAKLEKDEKALKEFYRSRGK 121

Query: 166 LNVMVKVQHHSISPTTLNITYVIEEGVKAKINSIRFVGNKNYSHARLERVISIRTSGYFS 225
            N  V+ +   +    +++ + I+EG KAKI  I FVGNK +S + L  V +++ S ++S
Sbjct: 122 YNAKVEAKVTPLPRNRVDLEFNIKEGKKAKIKKINFVGNKAFSDSELRDVFALKESNFWS 181

Query: 226 -FGKTDVYSKERMSFDEEAIRAFYHDRGYAAVKV-SSQVLFDKQKSGYVLIFQIDEGEIY 283
            F   D YSK+++  D E +R+FY +RGY   KV S+QV     K G  + + I EGE Y
Sbjct: 182 WFTGDDKYSKQKLEADLELLRSFYLNRGYLDFKVESTQVSITPDKKGVYITYNIKEGEQY 241

Query: 284 TVGNISIQSTLQEIQKKTLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPFVRVKTR 343
             G ++I+  L    ++ L  L++I+ G ++N  ++ +  + I          F  V  R
Sbjct: 242 KFGEVTIEGDLIGPDEE-LKKLLKIKKGEVFNRSKVTKIVKAIKDLLGEKGYAFANVNPR 300

Query: 344 INRDFAKRIVDIEYLIDQGSPLYVKRIEIEGNDQSYDSVIRRELELSEGDPINYSMIERA 403
              +   + VD+ + +D G  +YV+RI I GN ++ D VIRREL   EGD  + S I+R+
Sbjct: 301 PQINDENKTVDLTFKVDPGKRVYVRRINISGNTRTRDEVIRRELRQLEGDWYSLSKIKRS 360

Query: 404 KRRIMATGYFSEVNISQLPANDVSDYVILRVSVKQLSAGSVGIATNYEVDKGMGVEGHID 463
           KRR+   GYF  VNI  +P     D V L V VK+   GS+     Y    G+     I 
Sbjct: 361 KRRLERLGYFETVNIETVPVGS-PDQVDLNVKVKEQPTGSISFGVGYGSSSGLSFNASIS 419

Query: 464 DNNFFGQGYRARLAAGFGRHAVQNYTFSVEDPYFLGSPISAGFDLQKTH-----LEDGSL 518
           + NF G G R  L+A        +Y+ S  DPYF    +S GF +  +            
Sbjct: 420 ERNFLGTGNRLSLSANKSSL-STSYSLSFTDPYFTDDGVSLGFSIFYSETDRNYKNFSDY 478

Query: 519 DINDESAAVRMIVPITESISTSFKYDLRFLQYGAISEKEKIPSIYTTLIEH--GKFSSHS 576
                  ++ +  PITE +  S  Y     +   I       S  +  I+   GKF   S
Sbjct: 479 KTKTYGGSINLGYPITEYLRVSLGYG---YEQNKIKNSSDSDSSASYFIKEQGGKFIDSS 535

Query: 577 ISQSIIYNTLDNPIVPRKGMLISSSYDYAGFGGDSQYHRIGSRASYFYLLSDDSDIVGSL 636
           +S    Y+TLD+   P KG +   S ++AG GGD +Y+++   + Y+  LS + D V SL
Sbjct: 536 LSYGWSYDTLDSGYFPTKGSIQRLSQEFAGPGGDLKYYKLTYDSEYYIPLSKEDDWVLSL 595

Query: 637 RF--GYGCVIPSNKNLQLFDQFSVSSNYYLRGFAYKGIGPR--VDKKYAIGGKIYSSASA 692
           R   GYG      K+L  +++F       +RGF   GIGPR   D   +IGG   ++A+ 
Sbjct: 596 RGRLGYGNGY-GGKDLPFYERFYAGGIGSVRGFESNGIGPRDINDSGDSIGGNAMATANV 654

Query: 693 AVSFPMPLVPERAGLRGAFFVDSATLYANHVALGADKLEGNDSFWRVSTGVEIMWNSPLG 752
            + FP+P +PE  GLRG+ F D+  ++        D    +DS  R S GV + W SP+G
Sbjct: 655 ELIFPLPFLPEDNGLRGSVFFDAGNVWGTDQKKEGD--YSDDSSLRASVGVGLRWISPMG 712

Query: 753 MMGVYYGIPLRHREGDKIQQFGFRIGNR 780
            +   Y  PL+ ++GDK Q F F IG  
Sbjct: 713 PLRFSYAKPLKKKKGDKTQSFQFSIGTT 740


>gnl|CDD|182941 PRK11067, PRK11067, outer membrane protein assembly factor YaeT;
           Provisional.
          Length = 803

 Score =  271 bits (695), Expect = 4e-73
 Identities = 209/797 (26%), Positives = 353/797 (44%), Gaps = 60/797 (7%)

Query: 34  IFGLSAVYGSNTSIVRRIEIRGATNVGKEVILSRIPVVVGQSISDADLDHAVKNIYAMGY 93
           +F  + VYG+   +V+ I   G   V     L  +PV VG +++D D+ + ++ ++A G 
Sbjct: 12  LFSSATVYGAEGFVVKDIHFEGLQRVAVGAALLSMPVRVGDTVNDEDISNTIRALFATGN 71

Query: 94  FSNVKIKIVDSVLIIDLIERKIINHLFFSGNNNLKDDQLKMIVRS---RSAAAYDEDTVN 150
           F +V++    + L++ + ER  I  + FSGN ++KDD LK  + +   R   A D  T++
Sbjct: 72  FEDVRVLRDGNTLLVQVKERPTIASITFSGNKSVKDDMLKQNLEASGVRVGEALDRTTLS 131

Query: 151 ADVHNIKQAYASIGYLNVMVKVQHHSISPTTLNITYVIEEGVKAKINSIRFVGNKNYSHA 210
                ++  Y S+G  +  VK     +    +++  V  EGV AKI  I  VGN  +S  
Sbjct: 132 NIEKGLEDFYYSVGKYSASVKAVVTPLPRNRVDLKLVFTEGVSAKIQQINIVGNHAFSTD 191

Query: 211 RLERVISIRTS-GYFSFGKTDVYSKERMSFDEEAIRAFYHDRGYAAVKV-SSQVLFDKQK 268
            L     +R    +++      Y K++++ D E +R++Y DRGYA   + S+QV     K
Sbjct: 192 ELISRFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDK 251

Query: 269 SGYVLIFQIDEGEIYTVGNISIQSTL----QEIQKKTLLSLIRIRSGNLYNPQEIKESSE 324
            G  +   I EG+ Y +  + +   L     EI+K     L +I  G LYN  ++ +  +
Sbjct: 252 KGIYITVNITEGDQYKLSGVQVSGNLAGHSAEIEK-----LTKIEPGELYNGTKVTKMED 306

Query: 325 KISKYFFSGERPFVRVKTRINRDFAKRIVDIEYLIDQGSPLYVKRIEIEGNDQSYDSVIR 384
            I K        + RV+T+   + A + V +   +D G+  YV++I  EGND S D+V+R
Sbjct: 307 DIKKLLGRYGYAYPRVQTQPEINDADKTVKLHVNVDAGNRFYVRKIRFEGNDTSKDAVLR 366

Query: 385 RELELSEGDPINYSMIERAKRRIMATGYFSEVNISQLPANDVSDYVILRVSVKQLSAGSV 444
           RE+   EG  +   ++E+ K R+   G+F  V++         D V +   VK+ + GS 
Sbjct: 367 REMRQMEGAWLGSDLVEQGKERLNRLGFFETVDVDTQRVPGSPDQVDVVYKVKERNTGSF 426

Query: 445 GIATNYEVDKGMGVEGHIDDNNFFGQGYRARLAAGFGRHAVQNYT-FSVEDPYFLGSPIS 503
                Y  + G+  +  +  +N+ G G    +     ++  Q Y   SV DPYF    +S
Sbjct: 427 NFGVGYGTESGVSFQAGVQQDNWLGTGNSVGING--TKNDYQTYAELSVTDPYFTVDGVS 484

Query: 504 AGFDLQKTHLEDGSLDIND---ESAAVRMIV--PITE--SISTSFKY---DLRFLQ-YGA 552
            G  +     E    D++D   +S    + +  PI E  S+     Y    L  +Q   A
Sbjct: 485 LGGRIFYNDFEADDADLSDYTNKSYGTDVTLGFPINENNSLRAGLGYVHNSLSNMQPQVA 544

Query: 553 ISEKEKIPSIYTTLIEHGKFSSH--SISQSIIYNTLDNPIVPRKGMLISSSYDYAGFGGD 610
           +           +      F +   + +    YN LD    P  G  ++ +      G D
Sbjct: 545 MWRYLYSMGENPSSDSDNSFKTDDFTFNYGWTYNNLDRGYFPTAGNRVNLTGKVTIPGSD 604

Query: 611 SQYHRIGSRASYFYLLSDDSDIV--GSLRFGYGCVIPSNKNLQLFDQFSVSSNYYLRGFA 668
           ++Y+++    + +  L DD   V  G  R GYG  +   K +  ++ F    +  +RGF 
Sbjct: 605 NEYYKVTLDTAQYVPLDDDHKWVLLGRGRLGYGDGL-GGKEMPFYENFYAGGSSTVRGFQ 663

Query: 669 YKGIGPRV--------------DKKY-----AIGGKIYSSASAAVSFPMPLVPERAG--L 707
              IGP+                K       A+GG   + AS  +  P P + ++    +
Sbjct: 664 SNTIGPKAVYYPGQASNYTQDGAKDLCKSDDAVGGNAMAVASLELITPTPFISDKYANSV 723

Query: 708 RGAFFVDSATL----YANHVALGADKLE--GNDSFWRVSTGVEIMWNSPLGMMGVYYGIP 761
           R +FF D  T+    + N     A       + S  R+S G+ + W SPLG +   Y  P
Sbjct: 724 RTSFFWDMGTVWDTNWDNTAYTRAAGYPDYSDPSNIRMSAGIALQWMSPLGPLVFSYAQP 783

Query: 762 LRHREGDKIQQFGFRIG 778
            +  +GDK +QF F IG
Sbjct: 784 FKKYDGDKAEQFQFNIG 800


>gnl|CDD|148699 pfam07244, Surf_Ag_VNR, Surface antigen variable number repeat.
           This family is found primarily in bacterial surface
           antigens, normally as variable number repeats at the
           N-terminus. The C-terminus of these proteins is normally
           represented by pfam01103. The alignment centres on a
           -GY- or -GF- motif. Some members of this family are
           found in the mitochondria. It is predicted to have a
           mixed alpha/beta secondary structure.
          Length = 78

 Score = 51.5 bits (124), Expect = 8e-07
 Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 11/88 (12%)

Query: 194 AKINSIRFVGN-KNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFDEEAIRAFYHDRG 252
            KI  I   GN K      L R + ++          DV+++E++  D E +  +Y   G
Sbjct: 1   YKIKDINIEGNLKRTKDEVLRRELKLKEG--------DVFNREKLEEDIERLYDYYGALG 52

Query: 253 YAAVKVSSQVLFDKQKSGYVLIFQIDEG 280
           YA   V  +   +       L F +DEG
Sbjct: 53  YAFADVKVEP--EPDPKTVDLTFNVDEG 78



 Score = 50.4 bits (121), Expect = 2e-06
 Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 6/72 (8%)

Query: 366 YVKRIEIEGNDQSY-DSVIRRELELSEGDPINYSMIERAKRRI----MATGY-FSEVNIS 419
            +K I IEGN +   D V+RREL+L EGD  N   +E    R+     A GY F++V + 
Sbjct: 2   KIKDINIEGNLKRTKDEVLRRELKLKEGDVFNREKLEEDIERLYDYYGALGYAFADVKVE 61

Query: 420 QLPANDVSDYVI 431
             P     D   
Sbjct: 62  PEPDPKTVDLTF 73



 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 2/78 (2%)

Query: 115 IINHLFFSGNNN-LKDDQLKMIVRSRSAAAYDEDTVNADVHNIKQAYASIGYLNVMVKVQ 173
            I  +   GN    KD+ L+  ++ +    ++ + +  D+  +   Y ++GY    VKV+
Sbjct: 2   KIKDINIEGNLKRTKDEVLRRELKLKEGDVFNREKLEEDIERLYDYYGALGYAFADVKVE 61

Query: 174 HHSISPTTLNITYVIEEG 191
                P T+++T+ ++EG
Sbjct: 62  -PEPDPKTVDLTFNVDEG 78



 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 18/80 (22%), Positives = 45/80 (56%), Gaps = 2/80 (2%)

Query: 283 YTVGNISIQSTLQEIQKKTLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPFVRVKT 342
           Y + +I+I+  L+  + + L   ++++ G+++N ++++E  E++  Y+ +    F  VK 
Sbjct: 1   YKIKDINIEGNLKRTKDEVLRRELKLKEGDVFNREKLEEDIERLYDYYGALGYAFADVKV 60

Query: 343 RINRDFAKRIVDIEYLIDQG 362
               D   + VD+ + +D+G
Sbjct: 61  EPEPD--PKTVDLTFNVDEG 78


>gnl|CDD|130065 TIGR00992, 3a0901s03IAP75, chloroplast envelope protein
           translocase, IAP75 family.  Two families of proteins are
           involved in the chloroplast envelope import
           appartus.They are the three proteins of the outer
           membrane (TOC) and four proteins in the inner membrane
           (TIC). This family is specific for the TOC IAP75
           protein.
          Length = 718

 Score = 46.1 bits (109), Expect = 3e-05
 Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 9/144 (6%)

Query: 372 IEGNDQSYDSVIRREL--ELSEGDPINYSMIERAKRRIMATGYFSEVNISQLPANDVSDY 429
           +EGN +  D V+ REL  +L  GD  N    + A + I + G FS + ++  P       
Sbjct: 281 VEGNTR--DPVVTRELPKQLKPGDVFNIEAGKTALQNINSLGLFSNIEVNPRPDEMNEGE 338

Query: 430 VILRVSVKQLSAGSVGIATNYEVDKGMGVEGHIDDNNFFGQ-GYRARLAAGFGRHAVQNY 488
           +I+ + +K+L   S  ++T + +  G G    +  +   G   +  R   G  R    + 
Sbjct: 339 IIVEIKLKELEQKSAEVSTEWSIVPGRGGRPTLASSQPGGTITFEHRNLQGLNR----SL 394

Query: 489 TFSVEDPYFLGSPISAGFDLQKTH 512
             SV    FL       F ++ TH
Sbjct: 395 GGSVTTSNFLNPQDDLLFKVEYTH 418


>gnl|CDD|178683 PLN03138, PLN03138, Protein TOC75; Provisional.
          Length = 796

 Score = 33.3 bits (76), Expect = 0.25
 Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 4/88 (4%)

Query: 372 IEGNDQSYDSVIRREL--ELSEGDPINYSMIERAKRRIMATGYFSEVNISQLPANDVSDY 429
           +EGN Q    +I REL  +L +G   N    ++A R I +   FS + ++  P       
Sbjct: 359 VEGNTQ--LPIIDRELPKQLRQGHIFNIEAGKQALRNINSLALFSNIEVNPRPDEKNEGG 416

Query: 430 VILRVSVKQLSAGSVGIATNYEVDKGMG 457
           +++ + +K+L   S  ++T + +  G G
Sbjct: 417 IVVEIKLKELEPKSAEVSTEWSIVPGRG 444


>gnl|CDD|184070 PRK13473, PRK13473, gamma-aminobutyraldehyde dehydrogenase;
           Provisional.
          Length = 475

 Score = 31.8 bits (73), Expect = 0.61
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 17/61 (27%)

Query: 48  VRRIEIRGATNVGKEVILS--------------RIPVVVGQSISDADLDHAVKNIYAMGY 93
           VR + + G+   GK V+ +              + PV+V     DADLD  V+ I   GY
Sbjct: 217 VRMVSLTGSIATGKHVLSAAADSVKRTHLELGGKAPVIV---FDDADLDAVVEGIRTFGY 273

Query: 94  F 94
           +
Sbjct: 274 Y 274


>gnl|CDD|173541 PTZ00348, PTZ00348, tyrosyl-tRNA synthetase; Provisional.
          Length = 682

 Score = 30.6 bits (69), Expect = 1.7
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 7/56 (12%)

Query: 109 DLIERK----IINHLFFSGNNNLKDDQLKMIVRSRSAAAYDEDTVNADVHNIKQAY 160
           DLI RK    I++H   +G   LK  Q KM      +A + EDT       I+QAY
Sbjct: 197 DLIGRKLKPVILSHHMLAG---LKQGQAKMSKSDPDSAIFMEDTEEDVARKIRQAY 249


>gnl|CDD|132488 TIGR03447, mycothiol_MshC, cysteine--1-D-myo-inosityl
           2-amino-2-deoxy-alpha-D-glucopyranoside ligase.  Members
           of this protein family are MshC,
           l-cysteine:1-D-myo-inosityl
           2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an
           enzyme that uses ATP to ligate a Cys residue to a
           mycothiol precursor molecule, in the second to last step
           in mycothiol biosynthesis. This enzyme shows
           considerable homology to Cys--tRNA ligases, and many
           instances are misannotated as such. Mycothiol is found
           in Mycobacterium tuberculosis, Corynebacterium
           glutamicum, Streptomyces coelicolor, and various other
           members of the Actinobacteria. Mycothiol is an analog to
           glutathione.
          Length = 411

 Score = 30.1 bits (68), Expect = 2.2
 Identities = 34/127 (26%), Positives = 50/127 (39%), Gaps = 16/127 (12%)

Query: 460 GHIDDNNFFGQGYRARLAAGFGRHAVQNYTFSVEDPYFLGSPISAGFDLQKTHLEDGSLD 519
           GH      F    R    AG   H VQN T  V+DP F       G D +    E G+  
Sbjct: 53  GHAATYLTFDLVNRVWRDAGHRVHYVQNVT-DVDDPLF-ERAERDGVDWR----ELGTSQ 106

Query: 520 IN---DESAAVRMIVP-----ITESISTSFKYDLRFLQYGA--ISEKEKIPSIYTTLIEH 569
           I+   ++  A+R++ P       ESI    +   + L  GA    E  + P +Y ++   
Sbjct: 107 IDLFREDMEALRVLPPRDYIGAVESIDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIEAT 166

Query: 570 GKFSSHS 576
            +F   S
Sbjct: 167 EQFGYES 173


>gnl|CDD|177917 PLN02278, PLN02278, succinic semialdehyde dehydrogenase.
          Length = 498

 Score = 29.7 bits (67), Expect = 2.8
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 17/62 (27%)

Query: 47  IVRRIEIRGATNVGKEVI------LSRI--------PVVVGQSISDADLDHAVKNIYAMG 92
            VR+I   G+T VGK+++      + R+        P +V     DADLD AVK   A  
Sbjct: 239 KVRKITFTGSTAVGKKLMAGAAATVKRVSLELGGNAPFIV---FDDADLDVAVKGALASK 295

Query: 93  YF 94
           + 
Sbjct: 296 FR 297


>gnl|CDD|149506 pfam08478, POTRA_1, POTRA domain, FtsQ-type.  FtsQ/DivIB bacterial
           division proteins (pfam03799) contain an N-terminal
           POTRA domain (for polypeptide-transport-associated
           domain). This is found in different types of proteins,
           usually associated with a transmembrane beta-barrel.
           FtsQ/DivIB may have chaperone-like roles, which has also
           been postulated for the POTRA domain in other contexts.
          Length = 67

 Score = 29.4 bits (67), Expect = 3.1
 Identities = 14/67 (20%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 48  VRRIEIRGATNVGKEVILSRIPVVVGQSISDADLDHAVKNIYAMGYFSNVKI-KIVDSVL 106
           +R++E+ G  +V  E I   + +  G S    DL+     +  + +  +  + +   + L
Sbjct: 1   IRQVEVSGNKHVSAEEIRKALGIQKGTSFFSVDLNAIEDRLEKLPWIKSASVRRQWPNTL 60

Query: 107 IIDLIER 113
            I ++ER
Sbjct: 61  EIRVVER 67


>gnl|CDD|131337 TIGR02284, TIGR02284, conserved hypothetical protein.  Members of
           this protein family are found mostly in the
           Proteobacteria, although one member is found in the the
           marine planctomycete Pirellula sp. strain 1. The
           function is unknown.
          Length = 139

 Score = 29.4 bits (66), Expect = 3.2
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 7/57 (12%)

Query: 109 DLIERKIINHLFF-SGNNNLKDDQLKMIVRSRSAAAYDEDTVNADVHNIKQAYASIG 164
           DLIE  I     F      +KD +L  + R  +         +A V  ++Q  AS+G
Sbjct: 7   DLIEISIDGKDGFEESAEEVKDPELATLFRRIA------GEKSAIVSELQQVVASLG 57


>gnl|CDD|185597 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
          Length = 651

 Score = 29.6 bits (67), Expect = 3.4
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 1   MHKSTEDFRRIKRLLEKYFPRSFQMGFII 29
           M KS ++F  I++ L KY  R  ++ F++
Sbjct: 316 MSKSLKNFITIRQALSKYTARQIRLLFLL 344


>gnl|CDD|183848 PRK13024, PRK13024, bifunctional preprotein translocase subunit
          SecD/SecF; Reviewed.
          Length = 755

 Score = 29.4 bits (67), Expect = 3.6
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 9/68 (13%)

Query: 26 GFIILFYAIFGLSAVYG-SNTSIVRRI----EIRGATNVGKEVILSRIPVVVGQSISDAD 80
           ++I F  +  L  +Y  S   + + I    +++G    G EV+L   P   G+      
Sbjct: 5  RWVIFFLTLLLLIGIYYASPKFVTKNINLGLDLQG----GFEVLLEVSPADKGKKADREA 60

Query: 81 LDHAVKNI 88
          LD  V+ +
Sbjct: 61 LDSTVEVL 68


>gnl|CDD|150150 pfam09381, Porin_OmpG, Outer membrane protein G (OmpG).  Porins are
           channel proteins in the outer membrane of gram negative
           bacteria which mediate the uptake of molecules required
           for growth and survival. Escherichia coli OmpG forms a
           14 stranded beta-barrel and in contrast to most porins,
           appears to function as a monomer. The central pore of
           OmpG is wider than other E. coli porins and it is
           speculated that it may form a non-specific channel for
           the transport of larger oligosaccharides.
          Length = 280

 Score = 29.3 bits (65), Expect = 3.9
 Identities = 14/47 (29%), Positives = 24/47 (51%)

Query: 443 SVGIATNYEVDKGMGVEGHIDDNNFFGQGYRARLAAGFGRHAVQNYT 489
           +V +  NY +++G  ++   ++  F  Q  RA L    G H+V  YT
Sbjct: 164 TVALRVNYYLERGFNMDDSRNNGEFSTQEIRAYLPLTLGNHSVTPYT 210


>gnl|CDD|162254 TIGR01213, TIGR01213, conserved hypothetical protein TIGR01213.
           Members of this family show twilight-zone similarity to
           several predicted RNA pseudouridine synthases. All
           trusted members of this family are archaeal. Several
           eukaryotic homologs lack N-terminal homology including
           two CXXC motifs.
          Length = 388

 Score = 29.3 bits (66), Expect = 4.0
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 316 PQEIKESSEKISKYFFSGERPFVRVKTRINRDFAKRIVD-IEYLIDQGSPLYVKRIEIEG 374
           P ++ E  E+I K F SG      +K   NR+  K  V      +D   P  V  +E E 
Sbjct: 92  PPDVIELEEEIRKEFGSGGGE--SIKREFNREVGKLFVKRTGKEVDFERPDLVIMVEFEY 149


>gnl|CDD|162158 TIGR01015, hmgA, homogentisate 1,2-dioxygenase.  Missing in human
           disease alkaptonuria.
          Length = 429

 Score = 29.0 bits (65), Expect = 4.6
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)

Query: 539 TSFKYDL-RFLQYGAISEKEKIPSIYTTL 566
             +KYDL RF    ++S     PSI+T L
Sbjct: 269 VPYKYDLKRFNVINSVSFDHPDPSIFTVL 297


>gnl|CDD|177778 PLN00184, PLN00184, aquaporin NIP1; Provisional.
          Length = 296

 Score = 28.8 bits (64), Expect = 4.9
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 7/62 (11%)

Query: 21  RSFQMGFIILFYAIFGLSAVYGSNTSIVRRIEIRGATNVGKEVILSRIPVVVGQSISDAD 80
           ++F M FI+ FY +F +S V   N +I    E+ G   +G  V+L+   V++   +S A 
Sbjct: 179 QAFVMEFIVTFYLMFIISGVATDNRAIG---ELAGLA-IGSTVLLN---VLIAAPVSSAS 231

Query: 81  LD 82
           ++
Sbjct: 232 MN 233


>gnl|CDD|117056 pfam08479, POTRA_2, POTRA domain, ShlB-type.  The POTRA domain (for
           polypeptide-transport-associated domain) is found
           towards the N-terminus of ShlB family proteins
           (pfam03865). ShlB is important in the secretion and
           activation of the haemolysin ShlA. It has been
           postulated that the POTRA domain has a chaperone-like
           function over ShlA; it may fold back into the C-terminal
           beta-barrel channel.
          Length = 76

 Score = 28.3 bits (64), Expect = 8.7
 Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 8/73 (10%)

Query: 48  VRRIEIRGATNVGKEVILSRIPVVVGQSISDADLDHAVKNI----YAMGY-FSNVKI--- 99
           ++ IE+ G T +    + + +   +G+ +  ADL+   K +       GY  S V +   
Sbjct: 3   IKGIELEGNTLLPPADLAALLQPYLGRCLGLADLNQLAKALTNAYIERGYVTSRVYLPPQ 62

Query: 100 KIVDSVLIIDLIE 112
            + D VL + ++E
Sbjct: 63  DLSDGVLRLTVLE 75


>gnl|CDD|180212 PRK05702, flhB, flagellar biosynthesis protein FlhB; Reviewed.
          Length = 359

 Score = 28.2 bits (64), Expect = 8.8
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 5/32 (15%)

Query: 383 IRRELELSEGDP-----INYSMIERAKRRIMA 409
           ++ E + SEGDP     I     E A+RR+MA
Sbjct: 227 VKDEHKQSEGDPEVKGRIRQLQREMARRRMMA 258


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.320    0.138    0.390 

Gapped
Lambda     K      H
   0.267   0.0677    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 12,943,707
Number of extensions: 877139
Number of successful extensions: 1655
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1614
Number of HSP's successfully gapped: 41
Length of query: 781
Length of database: 5,994,473
Length adjustment: 101
Effective length of query: 680
Effective length of database: 3,812,065
Effective search space: 2592204200
Effective search space used: 2592204200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.4 bits)