RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780772|ref|YP_003065185.1| surface antigen (D15)
[Candidatus Liberibacter asiaticus str. psy62]
         (781 letters)



>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding
           family A member 1 (APBA1, X11) {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 85

 Score = 29.4 bits (66), Expect = 0.98
 Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 6/74 (8%)

Query: 35  FGLSAVYGSNTSIVRRIEIRG------ATNVGKEVILSRIPVVVGQSISDADLDHAVKNI 88
            G+  V     SI+  + I        A   GK  I  +I  + G S+    L      I
Sbjct: 12  LGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSII 71

Query: 89  YAMGYFSNVKIKIV 102
             +   S VK+ IV
Sbjct: 72  KGLKNQSRVKLNIV 85


>d1nlsa_ b.29.1.1 (A:) Concanavalin A {Jack bean (Canavalia
           ensiformis) [TaxId: 3823]}
          Length = 237

 Score = 26.4 bits (58), Expect = 9.6
 Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 6/99 (6%)

Query: 573 SSHSISQSIIYNTLDNPIVPRKGMLIS--SSYDYAGF----GGDSQYHRIGSRASYFYLL 626
               +S  + Y   D+  V     L +    +   G     G   + + I S +    L 
Sbjct: 57  VDKRLSAVVSYPNADSATVSYDVDLDNVLPEWVRVGLSASTGLYKETNTILSWSFTSKLK 116

Query: 627 SDDSDIVGSLRFGYGCVIPSNKNLQLFDQFSVSSNYYLR 665
           S+ +    +L F +       K+L L    +  ++  L 
Sbjct: 117 SNSTHETNALHFMFNQFSKDQKDLILQGDATTGTDGNLE 155


>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 111

 Score = 26.1 bits (57), Expect = 9.6
 Identities = 10/68 (14%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 35  FGLSAVYGSNTSIVRRIEIRGATNVGKEVILSRIPVVVGQSISDADLDHAVKNIYAMGYF 94
            G + + G+    V  ++   + ++        I  + G       +   +K + + G  
Sbjct: 28  LGFT-LRGNTPVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGG- 85

Query: 95  SNVKIKIV 102
             V++K+V
Sbjct: 86  EEVEMKVV 93


>d1zbxb1 d.339.1.1 (B:485-613) Regulatory protein SIR1 {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 129

 Score = 26.3 bits (58), Expect = 9.9
 Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 101 IVDSVLIIDLIERKIINHLFFSGNNNLKDDQLKMI 135
           + D  LI DL E K IN         LKD Q  MI
Sbjct: 12  VADGFLI-DLAEEKPINPKDPRLLTLLKDHQRAMI 45


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.138    0.390 

Gapped
Lambda     K      H
   0.267   0.0676    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,924,819
Number of extensions: 143143
Number of successful extensions: 392
Number of sequences better than 10.0: 1
Number of HSP's gapped: 392
Number of HSP's successfully gapped: 11
Length of query: 781
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 689
Effective length of database: 1,144,436
Effective search space: 788516404
Effective search space used: 788516404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.8 bits)