BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780772|ref|YP_003065185.1| surface antigen (D15) [Candidatus Liberibacter asiaticus str. psy62] (781 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780772|ref|YP_003065185.1| surface antigen (D15) [Candidatus Liberibacter asiaticus str. psy62] Length = 781 Score = 1583 bits (4099), Expect = 0.0, Method: Compositional matrix adjust. Identities = 781/781 (100%), Positives = 781/781 (100%) Query: 1 MHKSTEDFRRIKRLLEKYFPRSFQMGFIILFYAIFGLSAVYGSNTSIVRRIEIRGATNVG 60 MHKSTEDFRRIKRLLEKYFPRSFQMGFIILFYAIFGLSAVYGSNTSIVRRIEIRGATNVG Sbjct: 1 MHKSTEDFRRIKRLLEKYFPRSFQMGFIILFYAIFGLSAVYGSNTSIVRRIEIRGATNVG 60 Query: 61 KEVILSRIPVVVGQSISDADLDHAVKNIYAMGYFSNVKIKIVDSVLIIDLIERKIINHLF 120 KEVILSRIPVVVGQSISDADLDHAVKNIYAMGYFSNVKIKIVDSVLIIDLIERKIINHLF Sbjct: 61 KEVILSRIPVVVGQSISDADLDHAVKNIYAMGYFSNVKIKIVDSVLIIDLIERKIINHLF 120 Query: 121 FSGNNNLKDDQLKMIVRSRSAAAYDEDTVNADVHNIKQAYASIGYLNVMVKVQHHSISPT 180 FSGNNNLKDDQLKMIVRSRSAAAYDEDTVNADVHNIKQAYASIGYLNVMVKVQHHSISPT Sbjct: 121 FSGNNNLKDDQLKMIVRSRSAAAYDEDTVNADVHNIKQAYASIGYLNVMVKVQHHSISPT 180 Query: 181 TLNITYVIEEGVKAKINSIRFVGNKNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFD 240 TLNITYVIEEGVKAKINSIRFVGNKNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFD Sbjct: 181 TLNITYVIEEGVKAKINSIRFVGNKNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFD 240 Query: 241 EEAIRAFYHDRGYAAVKVSSQVLFDKQKSGYVLIFQIDEGEIYTVGNISIQSTLQEIQKK 300 EEAIRAFYHDRGYAAVKVSSQVLFDKQKSGYVLIFQIDEGEIYTVGNISIQSTLQEIQKK Sbjct: 241 EEAIRAFYHDRGYAAVKVSSQVLFDKQKSGYVLIFQIDEGEIYTVGNISIQSTLQEIQKK 300 Query: 301 TLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPFVRVKTRINRDFAKRIVDIEYLID 360 TLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPFVRVKTRINRDFAKRIVDIEYLID Sbjct: 301 TLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPFVRVKTRINRDFAKRIVDIEYLID 360 Query: 361 QGSPLYVKRIEIEGNDQSYDSVIRRELELSEGDPINYSMIERAKRRIMATGYFSEVNISQ 420 QGSPLYVKRIEIEGNDQSYDSVIRRELELSEGDPINYSMIERAKRRIMATGYFSEVNISQ Sbjct: 361 QGSPLYVKRIEIEGNDQSYDSVIRRELELSEGDPINYSMIERAKRRIMATGYFSEVNISQ 420 Query: 421 LPANDVSDYVILRVSVKQLSAGSVGIATNYEVDKGMGVEGHIDDNNFFGQGYRARLAAGF 480 LPANDVSDYVILRVSVKQLSAGSVGIATNYEVDKGMGVEGHIDDNNFFGQGYRARLAAGF Sbjct: 421 LPANDVSDYVILRVSVKQLSAGSVGIATNYEVDKGMGVEGHIDDNNFFGQGYRARLAAGF 480 Query: 481 GRHAVQNYTFSVEDPYFLGSPISAGFDLQKTHLEDGSLDINDESAAVRMIVPITESISTS 540 GRHAVQNYTFSVEDPYFLGSPISAGFDLQKTHLEDGSLDINDESAAVRMIVPITESISTS Sbjct: 481 GRHAVQNYTFSVEDPYFLGSPISAGFDLQKTHLEDGSLDINDESAAVRMIVPITESISTS 540 Query: 541 FKYDLRFLQYGAISEKEKIPSIYTTLIEHGKFSSHSISQSIIYNTLDNPIVPRKGMLISS 600 FKYDLRFLQYGAISEKEKIPSIYTTLIEHGKFSSHSISQSIIYNTLDNPIVPRKGMLISS Sbjct: 541 FKYDLRFLQYGAISEKEKIPSIYTTLIEHGKFSSHSISQSIIYNTLDNPIVPRKGMLISS 600 Query: 601 SYDYAGFGGDSQYHRIGSRASYFYLLSDDSDIVGSLRFGYGCVIPSNKNLQLFDQFSVSS 660 SYDYAGFGGDSQYHRIGSRASYFYLLSDDSDIVGSLRFGYGCVIPSNKNLQLFDQFSVSS Sbjct: 601 SYDYAGFGGDSQYHRIGSRASYFYLLSDDSDIVGSLRFGYGCVIPSNKNLQLFDQFSVSS 660 Query: 661 NYYLRGFAYKGIGPRVDKKYAIGGKIYSSASAAVSFPMPLVPERAGLRGAFFVDSATLYA 720 NYYLRGFAYKGIGPRVDKKYAIGGKIYSSASAAVSFPMPLVPERAGLRGAFFVDSATLYA Sbjct: 661 NYYLRGFAYKGIGPRVDKKYAIGGKIYSSASAAVSFPMPLVPERAGLRGAFFVDSATLYA 720 Query: 721 NHVALGADKLEGNDSFWRVSTGVEIMWNSPLGMMGVYYGIPLRHREGDKIQQFGFRIGNR 780 NHVALGADKLEGNDSFWRVSTGVEIMWNSPLGMMGVYYGIPLRHREGDKIQQFGFRIGNR Sbjct: 721 NHVALGADKLEGNDSFWRVSTGVEIMWNSPLGMMGVYYGIPLRHREGDKIQQFGFRIGNR 780 Query: 781 M 781 M Sbjct: 781 M 781 >gi|254780331|ref|YP_003064744.1| 50S ribosomal protein L9 [Candidatus Liberibacter asiaticus str. psy62] Length = 179 Score = 28.1 bits (61), Expect = 0.57, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%) Query: 149 VNADVHNIKQAYASIGYLNVMVKVQHHSISPT-TLNITYVIEEGVKAKI 196 VN N+K S+G N+M+ + H +S T TLN+ EE VK I Sbjct: 122 VNRGQINLKSPIKSVGIHNIMISL-HADVSTTITLNVARSTEEMVKQDI 169 >gi|254780750|ref|YP_003065163.1| DNA mismatch repair protein [Candidatus Liberibacter asiaticus str. psy62] Length = 920 Score = 25.8 bits (55), Expect = 2.6, Method: Compositional matrix adjust. Identities = 13/42 (30%), Positives = 20/42 (47%) Query: 675 RVDKKYAIGGKIYSSASAAVSFPMPLVPERAGLRGAFFVDSA 716 +V+K A Y + V+ P PER ++ F+DSA Sbjct: 254 QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSA 295 >gi|254780936|ref|YP_003065349.1| hypothetical protein CLIBASIA_04175 [Candidatus Liberibacter asiaticus str. psy62] Length = 182 Score = 25.0 bits (53), Expect = 4.5, Method: Compositional matrix adjust. Identities = 11/19 (57%), Positives = 13/19 (68%) Query: 710 AFFVDSATLYANHVALGAD 728 A F+D A LYA+ ALG D Sbjct: 9 ALFIDGANLYASSKALGFD 27 >gi|254781171|ref|YP_003065584.1| hypothetical protein CLIBASIA_05390 [Candidatus Liberibacter asiaticus str. psy62] Length = 420 Score = 25.0 bits (53), Expect = 4.5, Method: Compositional matrix adjust. Identities = 13/34 (38%), Positives = 22/34 (64%) Query: 421 LPANDVSDYVILRVSVKQLSAGSVGIATNYEVDK 454 +P N V+ ++ +V L +GS+GIAT++ DK Sbjct: 134 IPNNVVAPFLESQVIGILLISGSIGIATHFITDK 167 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.320 0.138 0.390 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 510,678 Number of Sequences: 1233 Number of extensions: 22528 Number of successful extensions: 68 Number of sequences better than 100.0: 8 Number of HSP's better than 100.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 56 Number of HSP's gapped (non-prelim): 9 length of query: 781 length of database: 328,796 effective HSP length: 81 effective length of query: 700 effective length of database: 228,923 effective search space: 160246100 effective search space used: 160246100 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 42 (20.8 bits)