BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780772|ref|YP_003065185.1| surface antigen (D15)
[Candidatus Liberibacter asiaticus str. psy62]
         (781 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780772|ref|YP_003065185.1| surface antigen (D15) [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 781

 Score = 1583 bits (4099), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 781/781 (100%), Positives = 781/781 (100%)

Query: 1   MHKSTEDFRRIKRLLEKYFPRSFQMGFIILFYAIFGLSAVYGSNTSIVRRIEIRGATNVG 60
           MHKSTEDFRRIKRLLEKYFPRSFQMGFIILFYAIFGLSAVYGSNTSIVRRIEIRGATNVG
Sbjct: 1   MHKSTEDFRRIKRLLEKYFPRSFQMGFIILFYAIFGLSAVYGSNTSIVRRIEIRGATNVG 60

Query: 61  KEVILSRIPVVVGQSISDADLDHAVKNIYAMGYFSNVKIKIVDSVLIIDLIERKIINHLF 120
           KEVILSRIPVVVGQSISDADLDHAVKNIYAMGYFSNVKIKIVDSVLIIDLIERKIINHLF
Sbjct: 61  KEVILSRIPVVVGQSISDADLDHAVKNIYAMGYFSNVKIKIVDSVLIIDLIERKIINHLF 120

Query: 121 FSGNNNLKDDQLKMIVRSRSAAAYDEDTVNADVHNIKQAYASIGYLNVMVKVQHHSISPT 180
           FSGNNNLKDDQLKMIVRSRSAAAYDEDTVNADVHNIKQAYASIGYLNVMVKVQHHSISPT
Sbjct: 121 FSGNNNLKDDQLKMIVRSRSAAAYDEDTVNADVHNIKQAYASIGYLNVMVKVQHHSISPT 180

Query: 181 TLNITYVIEEGVKAKINSIRFVGNKNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFD 240
           TLNITYVIEEGVKAKINSIRFVGNKNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFD
Sbjct: 181 TLNITYVIEEGVKAKINSIRFVGNKNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFD 240

Query: 241 EEAIRAFYHDRGYAAVKVSSQVLFDKQKSGYVLIFQIDEGEIYTVGNISIQSTLQEIQKK 300
           EEAIRAFYHDRGYAAVKVSSQVLFDKQKSGYVLIFQIDEGEIYTVGNISIQSTLQEIQKK
Sbjct: 241 EEAIRAFYHDRGYAAVKVSSQVLFDKQKSGYVLIFQIDEGEIYTVGNISIQSTLQEIQKK 300

Query: 301 TLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPFVRVKTRINRDFAKRIVDIEYLID 360
           TLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPFVRVKTRINRDFAKRIVDIEYLID
Sbjct: 301 TLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPFVRVKTRINRDFAKRIVDIEYLID 360

Query: 361 QGSPLYVKRIEIEGNDQSYDSVIRRELELSEGDPINYSMIERAKRRIMATGYFSEVNISQ 420
           QGSPLYVKRIEIEGNDQSYDSVIRRELELSEGDPINYSMIERAKRRIMATGYFSEVNISQ
Sbjct: 361 QGSPLYVKRIEIEGNDQSYDSVIRRELELSEGDPINYSMIERAKRRIMATGYFSEVNISQ 420

Query: 421 LPANDVSDYVILRVSVKQLSAGSVGIATNYEVDKGMGVEGHIDDNNFFGQGYRARLAAGF 480
           LPANDVSDYVILRVSVKQLSAGSVGIATNYEVDKGMGVEGHIDDNNFFGQGYRARLAAGF
Sbjct: 421 LPANDVSDYVILRVSVKQLSAGSVGIATNYEVDKGMGVEGHIDDNNFFGQGYRARLAAGF 480

Query: 481 GRHAVQNYTFSVEDPYFLGSPISAGFDLQKTHLEDGSLDINDESAAVRMIVPITESISTS 540
           GRHAVQNYTFSVEDPYFLGSPISAGFDLQKTHLEDGSLDINDESAAVRMIVPITESISTS
Sbjct: 481 GRHAVQNYTFSVEDPYFLGSPISAGFDLQKTHLEDGSLDINDESAAVRMIVPITESISTS 540

Query: 541 FKYDLRFLQYGAISEKEKIPSIYTTLIEHGKFSSHSISQSIIYNTLDNPIVPRKGMLISS 600
           FKYDLRFLQYGAISEKEKIPSIYTTLIEHGKFSSHSISQSIIYNTLDNPIVPRKGMLISS
Sbjct: 541 FKYDLRFLQYGAISEKEKIPSIYTTLIEHGKFSSHSISQSIIYNTLDNPIVPRKGMLISS 600

Query: 601 SYDYAGFGGDSQYHRIGSRASYFYLLSDDSDIVGSLRFGYGCVIPSNKNLQLFDQFSVSS 660
           SYDYAGFGGDSQYHRIGSRASYFYLLSDDSDIVGSLRFGYGCVIPSNKNLQLFDQFSVSS
Sbjct: 601 SYDYAGFGGDSQYHRIGSRASYFYLLSDDSDIVGSLRFGYGCVIPSNKNLQLFDQFSVSS 660

Query: 661 NYYLRGFAYKGIGPRVDKKYAIGGKIYSSASAAVSFPMPLVPERAGLRGAFFVDSATLYA 720
           NYYLRGFAYKGIGPRVDKKYAIGGKIYSSASAAVSFPMPLVPERAGLRGAFFVDSATLYA
Sbjct: 661 NYYLRGFAYKGIGPRVDKKYAIGGKIYSSASAAVSFPMPLVPERAGLRGAFFVDSATLYA 720

Query: 721 NHVALGADKLEGNDSFWRVSTGVEIMWNSPLGMMGVYYGIPLRHREGDKIQQFGFRIGNR 780
           NHVALGADKLEGNDSFWRVSTGVEIMWNSPLGMMGVYYGIPLRHREGDKIQQFGFRIGNR
Sbjct: 721 NHVALGADKLEGNDSFWRVSTGVEIMWNSPLGMMGVYYGIPLRHREGDKIQQFGFRIGNR 780

Query: 781 M 781
           M
Sbjct: 781 M 781


>gi|254780331|ref|YP_003064744.1| 50S ribosomal protein L9 [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 179

 Score = 28.1 bits (61), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 149 VNADVHNIKQAYASIGYLNVMVKVQHHSISPT-TLNITYVIEEGVKAKI 196
           VN    N+K    S+G  N+M+ + H  +S T TLN+    EE VK  I
Sbjct: 122 VNRGQINLKSPIKSVGIHNIMISL-HADVSTTITLNVARSTEEMVKQDI 169


>gi|254780750|ref|YP_003065163.1| DNA mismatch repair protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 920

 Score = 25.8 bits (55), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 13/42 (30%), Positives = 20/42 (47%)

Query: 675 RVDKKYAIGGKIYSSASAAVSFPMPLVPERAGLRGAFFVDSA 716
           +V+K  A     Y   +  V+ P    PER  ++   F+DSA
Sbjct: 254 QVEKTAAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSA 295


>gi|254780936|ref|YP_003065349.1| hypothetical protein CLIBASIA_04175 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 182

 Score = 25.0 bits (53), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 11/19 (57%), Positives = 13/19 (68%)

Query: 710 AFFVDSATLYANHVALGAD 728
           A F+D A LYA+  ALG D
Sbjct: 9   ALFIDGANLYASSKALGFD 27


>gi|254781171|ref|YP_003065584.1| hypothetical protein CLIBASIA_05390 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 420

 Score = 25.0 bits (53), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 22/34 (64%)

Query: 421 LPANDVSDYVILRVSVKQLSAGSVGIATNYEVDK 454
           +P N V+ ++  +V    L +GS+GIAT++  DK
Sbjct: 134 IPNNVVAPFLESQVIGILLISGSIGIATHFITDK 167


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.320    0.138    0.390 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 510,678
Number of Sequences: 1233
Number of extensions: 22528
Number of successful extensions: 68
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 56
Number of HSP's gapped (non-prelim): 9
length of query: 781
length of database: 328,796
effective HSP length: 81
effective length of query: 700
effective length of database: 228,923
effective search space: 160246100
effective search space used: 160246100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 42 (20.8 bits)