HHsearch alignment for GI: 254780773 and conserved domain: COG3480
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms].
Probab=98.56 E-value=2.3e-07 Score=70.52 Aligned_cols=153 Identities=19% Similarity=0.244 Sum_probs=87.1
Q ss_pred CCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCC-CCCCCCEEEEEECCCCEEEECCCCCCCCCCCCCEEEE
Q ss_conf 000245675565300145662888878304540011111014-6788631699965873131011211005654310000
Q gi|254780773|r 121 VVSNVSPASPAAIAGVKKGDCIISLDGITVSAFEEVAPYVRE-NPLHEISLVLYREHVGVLHLKVMPRLQDTVDRFGIKR 199 (349)
Q Consensus 121 ~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~~dl~~~i~~-~~g~~v~i~v~R~~~~~~~~~v~p~~~~~~~~~g~~~ 199 (349)
T Consensus 133 yv~~v~~~~~~~gk-l~~gD~i~avdg~~f~s~~e~i~~v~~~k~Gd~VtI~~~r~~~~~~~~~~tl~~~~~~g~~giGI 211 (342)
T COG3480 133 YVLSVIDNSPFKGK-LEAGDTIIAVDGEPFTSSDELIDYVSSKKPGDEVTIDYERHNETPEIVTITLIKNDDNGKAGIGI 211 (342)
T ss_pred EEEECCCCCCHHCE-ECCCCEEEEECCEECCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEEEEEECCCCCCEEEE
T ss_conf 99971478631022-32687688558944578899999985468897699999951698726899999604688641215
Q ss_pred EEEECC-----CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCC--CCCCCCCCCCCCCCH-HHHHHHHHHHC
Q ss_conf 122034-----4443212333456688876898886554223100000002--554200224667301-22333456530
Q gi|254780773|r 200 QVPSVG-----ISFSYDETKLHSRTVLQSFSRGLDEISSITRGFLGVLSSA--FGKDTRLNQISGPVG-IARIAKNFFDH 271 (349)
Q Consensus 200 ~~~~ig-----i~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~l--~~g~~~~~~lsGPVg-Ia~~~~~~a~~ 271 (349)
T Consensus 212 sl~d~~~v~~~~~V~~~~~~IGGPSAGLMFSL~Iy--~qlt~~DL~~-g~~IAGTGTI~~DG~VG~IGGI~qKvvAA~~A 288 (342)
T COG3480 212 SLVDAPEVWAPPDVDFNTENIGGPSAGLMFSLAIY--DQLTKGDLTG-GRFIAGTGTIEVDGKVGPIGGIDQKVVAAAKA 288 (342)
T ss_pred EEECCCCCCCCCCEEEECCCCCCCCHHHEEEHHHH--HHCCCCCCCC-CEEEECCEEECCCCCCCCCCCHHHHHHHHHHC
T ss_conf 86347654568726751244799754333529888--6405311358-66984111334688335745476776778765
Q ss_pred CHHHHH
Q ss_conf 503478
Q gi|254780773|r 272 GFNAYI 277 (349)
Q Consensus 272 G~~~~l 277 (349)
T Consensus 289 GA~vFf 294 (342)
T COG3480 289 GADVFF 294 (342)
T ss_pred CCCEEE
T ss_conf 985998