HHsearch alignment for GI: 254780773 and conserved domain: PRK09681
>PRK09681 putative type II secretion protein GspC; Provisional.
Probab=96.94 E-value=0.0011 Score=45.17 Aligned_cols=58 Identities=21% Similarity=0.377 Sum_probs=45.1
Q ss_pred CCCCCH---HHHHHCCCCCEEEEECCCCCCCCHHHHHHCCC-CCCCCCEEEEEECCCCEEEEC
Q ss_conf 456755---65300145662888878304540011111014-678863169996587313101
Q gi|254780773|r 125 VSPASP---AAIAGVKKGDCIISLDGITVSAFEEVAPYVRE-NPLHEISLVLYREHVGVLHLK 183 (349)
Q Consensus 125 V~~~sp---A~~AGL~~GD~Il~InG~~V~s~~dl~~~i~~-~~g~~v~i~v~R~~~~~~~~~ 183 (349)
T Consensus 254 l~PGkd~~lF~~~Glq~gDlavsiNG~dLtDp~~a~~~~~~l~~ate~~ltVeRdGq~-~~I~ 315 (319)
T PRK09681 254 VKPGADRSLFDASGFKEGDIAIALNQQDFTDPRAMIALMRQLPSMDSIQLTVLRKGAR-YDIS 315 (319)
T ss_pred ECCCCCHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCEEEEEEEECCEE-EEEE
T ss_conf 2799888999972999888889826966789899999999600071558999979968-9999