HHsearch alignment for GI: 254780773 and conserved domain: cd00987
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.99 E-value=5.4e-10 Score=88.68 Aligned_cols=63 Identities=32% Similarity=0.526 Sum_probs=56.1
Q ss_pred CCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCC-CCCCCEEEEEECCCCEEEEC
Q ss_conf 20002456755653001456628888783045400111110146-78863169996587313101
Q gi|254780773|r 120 PVVSNVSPASPAAIAGVKKGDCIISLDGITVSAFEEVAPYVREN-PLHEISLVLYREHVGVLHLK 183 (349)
Q Consensus 120 p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~~dl~~~i~~~-~g~~v~i~v~R~~~~~~~~~ 183 (349)
T Consensus 26 v~V~~V~~~spA~~aGl~~GDiI~~ing~~i~~~~~~~~~l~~~~~g~~v~~~v~R~g~~-~~~~ 89 (90)
T cd00987 26 VLVASVDPGSPAAKAGLKPGDVILAVNGKPVKSVADLRRALAELKPGDKVTLTVLRGGKE-LTVT 89 (90)
T ss_pred EEEEEECCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHHCCCCCEEEEEEEECCEE-EEEE
T ss_conf 999998999959982999998999999999389999999998269998799999999999-9978