HHsearch alignment for GI: 254780773 and conserved domain: cd00990
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.98 E-value=5.3e-10 Score=88.72 Aligned_cols=63 Identities=22% Similarity=0.391 Sum_probs=54.8
Q ss_pred CCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCCEEEECCC
Q ss_conf 200024567556530014566288887830454001111101467886316999658731310112
Q gi|254780773|r 120 PVVSNVSPASPAAIAGVKKGDCIISLDGITVSAFEEVAPYVRENPLHEISLVLYREHVGVLHLKVM 185 (349)
Q Consensus 120 p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~~dl~~~i~~~~g~~v~i~v~R~~~~~~~~~v~ 185 (349)
T Consensus 14 ~~V~~V~~~sPA~~AGl~~GD~IvaidG~~v~~~~~~~~--~~~~G~~v~l~v~R~g~-l~~~~vt 76 (80)
T cd00990 14 GKVTFVRDDSPADKAGLVAGDELVAVNGWRVDALQDRLK--EYQAGDPVELTVFRDDR-LIEVPLT 76 (80)
T ss_pred EEEEEECCCCHHHHCCCCCCCEEEEECCEEEHHHHHHHH--HCCCCCEEEEEEEECCE-EEEEEEE
T ss_conf 999998889969985999899999999999237899997--36998989999999999-9998999