HHsearch alignment for GI: 254780773 and conserved domain: cd00992

>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.

Probab=98.12  E-value=2.4e-06  Score=63.55  Aligned_cols=54  Identities=30%  Similarity=0.528  Sum_probs=46.1

Q ss_pred             CCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCC--CCHHHHHHCCCCCCCCCEEEE
Q ss_conf             3320002456755653001456628888783045--400111110146788631699
Q gi|254780773|r  118 MKPVVSNVSPASPAAIAGVKKGDCIISLDGITVS--AFEEVAPYVRENPLHEISLVL  172 (349)
Q Consensus       118 ~~p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~--s~~dl~~~i~~~~g~~v~i~v  172 (349)
T Consensus        26 ~~~~I~~v~~~s~A~~~~L~~GD~Il~INg~~v~~~~~~~v~~~l~~~~~-~v~L~V   81 (82)
T cd00992          26 GGIFVSRVEPGGPAERGGLRVGDRILEVNGVSVEGLTHEEAVELLKNSGD-EVTLTV   81 (82)
T ss_pred             CCEEEEEECCCCCHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCC-EEEEEE
T ss_conf             99999998689903434899999989899999999989999999984999-599998