HHsearch alignment for GI: 254780773 and conserved domain: cd06160
>cd06160 S2P-M50_like_2 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with additional putative N- and C-terminal transmembrane spanning regions, relative to the core protein, and no PDZ domains.
Probab=99.60 E-value=2.9e-14 Score=118.06 Aligned_cols=78 Identities=26% Similarity=0.433 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE-EEEECCCHHEEEEECCCEEEEEEEEEECCEEECCCCCCCHHHHCCCC
Q ss_conf 99999999999999733779999984975004-55306831127860598079999771121110012445506650368
Q gi|254780773|r 7 FLLYTVSLIIIVVIHEFGHYMVARLCNIRVLS-FSVGFGPELIGITSRSGVRWKVSLIPLGGYVSFSEDEKDMRSFFCAA 85 (349)
Q Consensus 7 ~~~~~~~l~~~v~iHE~GH~~~Ar~~gv~V~~-FsiGfgp~l~~~~~k~~t~y~i~~~PlGgyV~~~~~e~~~~~f~~~~ 85 (349)
T Consensus 33 gl~~al~l~~il~~HElGH~l~a~~~gv~~~~p~fiP~~~----------------lg~fGav~~~~~~~~--------~ 88 (183)
T cd06160 33 GLPFALALLAILGIHEMGHYLAARRHGVKASLPYFIPFPF----------------IGTFGAFIRMRSPIP--------N 88 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCC----------------HHHHHEEEECCCCCC--------C
T ss_conf 9999999999999999999999999399777603566620----------------231010234567898--------9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 42101342112333211221110
Q gi|254780773|r 86 PWKKILTVLAGPLANCVMAILFF 108 (349)
Q Consensus 86 ~~~R~~i~~AGp~~N~ilA~iif 108 (349)
T Consensus 89 ~~~~~~ia~aGPl~g~~~~~~~~ 111 (183)
T cd06160 89 RKALFDIALAGPLAGLLLALPVL 111 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89988998750888999999999