HHsearch alignment for GI: 254780773 and conserved domain: cd06161
>cd06161 S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation. SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB.
Probab=99.80 E-value=1.6e-18 Score=147.54 Aligned_cols=151 Identities=36% Similarity=0.639 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCHHEEEEECCCEEEEEEEEEECCEEECCCCCCCHHHHCCCCC
Q ss_conf 99999999999999733779999984975004553068311278605980799997711211100124455066503684
Q gi|254780773|r 7 FLLYTVSLIIIVVIHEFGHYMVARLCNIRVLSFSVGFGPELIGITSRSGVRWKVSLIPLGGYVSFSEDEKDMRSFFCAAP 86 (349)
Q Consensus 7 ~~~~~~~l~~~v~iHE~GH~~~Ar~~gv~V~~FsiGfgp~l~~~~~k~~t~y~i~~~PlGgyV~~~~~e~~~~~f~~~~~ 86 (349)
T Consensus 30 ~~~~~l~lf~sVl~HElgH~l~A~~~G~~v~~---------------------I~L~pfGG~a~~~~~~~--------~~ 80 (208)
T cd06161 30 GLLEALLLFLSVLLHELGHALVARRYGIRVRS---------------------ITLLPFGGVAELEEEPE--------TP 80 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC---------------------EEEEEEEEEEECCCCCC--------CH
T ss_conf 99999999999999999999999994998886---------------------58885012566367775--------78
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCC
Q ss_conf 21013421123332112211101110012333320002456755653001456628888783045400111110146788
Q gi|254780773|r 87 WKKILTVLAGPLANCVMAILFFTFFFYNTGVMKPVVSNVSPASPAAIAGVKKGDCIISLDGITVSAFEEVAPYVRENPLH 166 (349)
Q Consensus 87 ~~R~~i~~AGp~~N~ilA~iif~~~~~~~g~~~p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~~dl~~~i~~~~g~ 166 (349)
T Consensus 81 ~~e~~IalAGPl~nl~l~~~~~~l~~~~---------------------------------------------------- 108 (208)
T cd06161 81 KEEFVIALAGPLVSLLLAGLFYLLYLLL---------------------------------------------------- 108 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------------------------------------------
T ss_conf 8888999833488999999999999975----------------------------------------------------
Q ss_pred CCEEEEEECCCCEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCCC
Q ss_conf 63169996587313101121100565431000012203444432123334566888768988865542231000000025
Q gi|254780773|r 167 EISLVLYREHVGVLHLKVMPRLQDTVDRFGIKRQVPSVGISFSYDETKLHSRTVLQSFSRGLDEISSITRGFLGVLSSAF 246 (349)
Q Consensus 167 ~v~i~v~R~~~~~~~~~v~p~~~~~~~~~g~~~~~~~igi~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~l~ 246 (349)
T Consensus 109 -------------------~~----------------------------------------------------------- 110 (208)
T cd06161 109 -------------------PG----------------------------------------------------------- 110 (208)
T ss_pred -------------------CC-----------------------------------------------------------
T ss_conf -------------------66-----------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 54200224667301223334565305034789999999999999630647224369999999888278699999999999
Q gi|254780773|r 247 GKDTRLNQISGPVGIARIAKNFFDHGFNAYIAFLAMFSWAIGFMNLLPIPILDGGHLITFLLEMIRGKSLGVSVTRVITR 326 (349)
Q Consensus 247 ~g~~~~~~lsGPVgIa~~~~~~a~~G~~~~l~~~a~isi~Lg~~NlLPip~LDGG~i~~~~~E~i~gr~i~~~~~~~~~~ 326 (349)
T Consensus 111 ------~---~~--------------~~~~~~~~~~~Nl~l~~FNLlP~~PLDGGrilrall~~~~~~---~~at~~a~~ 164 (208)
T cd06161 111 ------G---GP--------------LSSLLEFLAQVNLILGLFNLLPALPLDGGRVLRALLWRRTGY---RRATRIAAR 164 (208)
T ss_pred ------C---CH--------------HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCH---HHHHHHHHH
T ss_conf ------4---16--------------999999999999999999828787886699999999986178---999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999
Q gi|254780773|r 327 MGLCIILFLFFLGIRN 342 (349)
Q Consensus 327 ~g~~ll~~l~i~~~~n 342 (349)
T Consensus 165 ~g~~~~~~l~~~g~~~ 180 (208)
T cd06161 165 IGQLFAILLVVLGLFL 180 (208)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999999999