HHsearch alignment for GI: 254780773 and conserved domain: cd06161

>cd06161 S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation. SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB.
Probab=99.80  E-value=1.6e-18  Score=147.54  Aligned_cols=151  Identities=36%  Similarity=0.639  Sum_probs=110.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCHHEEEEECCCEEEEEEEEEECCEEECCCCCCCHHHHCCCCC
Q ss_conf             99999999999999733779999984975004553068311278605980799997711211100124455066503684
Q gi|254780773|r    7 FLLYTVSLIIIVVIHEFGHYMVARLCNIRVLSFSVGFGPELIGITSRSGVRWKVSLIPLGGYVSFSEDEKDMRSFFCAAP   86 (349)
Q Consensus         7 ~~~~~~~l~~~v~iHE~GH~~~Ar~~gv~V~~FsiGfgp~l~~~~~k~~t~y~i~~~PlGgyV~~~~~e~~~~~f~~~~~   86 (349)
T Consensus        30 ~~~~~l~lf~sVl~HElgH~l~A~~~G~~v~~---------------------I~L~pfGG~a~~~~~~~--------~~   80 (208)
T cd06161          30 GLLEALLLFLSVLLHELGHALVARRYGIRVRS---------------------ITLLPFGGVAELEEEPE--------TP   80 (208)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC---------------------EEEEEEEEEEECCCCCC--------CH
T ss_conf             99999999999999999999999994998886---------------------58885012566367775--------78


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCC
Q ss_conf             21013421123332112211101110012333320002456755653001456628888783045400111110146788
Q gi|254780773|r   87 WKKILTVLAGPLANCVMAILFFTFFFYNTGVMKPVVSNVSPASPAAIAGVKKGDCIISLDGITVSAFEEVAPYVRENPLH  166 (349)
Q Consensus        87 ~~R~~i~~AGp~~N~ilA~iif~~~~~~~g~~~p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~~dl~~~i~~~~g~  166 (349)
T Consensus        81 ~~e~~IalAGPl~nl~l~~~~~~l~~~~----------------------------------------------------  108 (208)
T cd06161          81 KEEFVIALAGPLVSLLLAGLFYLLYLLL----------------------------------------------------  108 (208)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------------------------------------------
T ss_conf             8888999833488999999999999975----------------------------------------------------


Q ss_pred             CCEEEEEECCCCEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCCC
Q ss_conf             63169996587313101121100565431000012203444432123334566888768988865542231000000025
Q gi|254780773|r  167 EISLVLYREHVGVLHLKVMPRLQDTVDRFGIKRQVPSVGISFSYDETKLHSRTVLQSFSRGLDEISSITRGFLGVLSSAF  246 (349)
Q Consensus       167 ~v~i~v~R~~~~~~~~~v~p~~~~~~~~~g~~~~~~~igi~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~l~  246 (349)
T Consensus       109 -------------------~~-----------------------------------------------------------  110 (208)
T cd06161         109 -------------------PG-----------------------------------------------------------  110 (208)
T ss_pred             -------------------CC-----------------------------------------------------------
T ss_conf             -------------------66-----------------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf             54200224667301223334565305034789999999999999630647224369999999888278699999999999
Q gi|254780773|r  247 GKDTRLNQISGPVGIARIAKNFFDHGFNAYIAFLAMFSWAIGFMNLLPIPILDGGHLITFLLEMIRGKSLGVSVTRVITR  326 (349)
Q Consensus       247 ~g~~~~~~lsGPVgIa~~~~~~a~~G~~~~l~~~a~isi~Lg~~NlLPip~LDGG~i~~~~~E~i~gr~i~~~~~~~~~~  326 (349)
T Consensus       111 ------~---~~--------------~~~~~~~~~~~Nl~l~~FNLlP~~PLDGGrilrall~~~~~~---~~at~~a~~  164 (208)
T cd06161         111 ------G---GP--------------LSSLLEFLAQVNLILGLFNLLPALPLDGGRVLRALLWRRTGY---RRATRIAAR  164 (208)
T ss_pred             ------C---CH--------------HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCH---HHHHHHHHH
T ss_conf             ------4---16--------------999999999999999999828787886699999999986178---999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999
Q gi|254780773|r  327 MGLCIILFLFFLGIRN  342 (349)
Q Consensus       327 ~g~~ll~~l~i~~~~n  342 (349)
T Consensus       165 ~g~~~~~~l~~~g~~~  180 (208)
T cd06161         165 IGQLFAILLVVLGLFL  180 (208)
T ss_pred             HHHHHHHHHHHHHHHH
T ss_conf             9999999999999999