HHsearch alignment for GI: 254780773 and conserved domain: cd06164

>cd06164 S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation. In this subgroup, SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. It has been proposed tha
Probab=99.80  E-value=4.6e-18  Score=144.31  Aligned_cols=148  Identities=31%  Similarity=0.560  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCHHEEEEECCCEEEEEEEEEECCEEECCCCCCCHHHHCCCCCC
Q ss_conf             99999999999997337799999849750045530683112786059807999977112111001244550665036842
Q gi|254780773|r    8 LLYTVSLIIIVVIHEFGHYMVARLCNIRVLSFSVGFGPELIGITSRSGVRWKVSLIPLGGYVSFSEDEKDMRSFFCAAPW   87 (349)
Q Consensus         8 ~~~~~~l~~~v~iHE~GH~~~Ar~~gv~V~~FsiGfgp~l~~~~~k~~t~y~i~~~PlGgyV~~~~~e~~~~~f~~~~~~   87 (349)
T Consensus        46 ~~~a~~lf~sVllHElgHal~Ar~~G~~v~~---------------------I~L~~fGG~a~~~~~~~--------~p~   96 (227)
T cd06164          46 LAAALLLFASVLLHELGHSLVARRYGIPVRS---------------------ITLFLFGGVARLEREPE--------TPG   96 (227)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC---------------------EEEEEEEEEEECCCCCC--------CHH
T ss_conf             9999999999999999999999992998471---------------------78896351465258999--------967


Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCC
Q ss_conf             10134211233321122111011100123333200024567556530014566288887830454001111101467886
Q gi|254780773|r   88 KKILTVLAGPLANCVMAILFFTFFFYNTGVMKPVVSNVSPASPAAIAGVKKGDCIISLDGITVSAFEEVAPYVRENPLHE  167 (349)
Q Consensus        88 ~R~~i~~AGp~~N~ilA~iif~~~~~~~g~~~p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~~dl~~~i~~~~g~~  167 (349)
T Consensus        97 ~e~~Ia~AGPl~n~~l~~~~~~l~~~~~~---------------------------------------------------  125 (227)
T cd06164          97 QEFVIAIAGPLVSLVLALLFLLLSLALPG---------------------------------------------------  125 (227)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCC---------------------------------------------------
T ss_conf             77266440178999999999999987455---------------------------------------------------


Q ss_pred             CEEEEEECCCCEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCCCC
Q ss_conf             31699965873131011211005654310000122034444321233345668887689888655422310000000255
Q gi|254780773|r  168 ISLVLYREHVGVLHLKVMPRLQDTVDRFGIKRQVPSVGISFSYDETKLHSRTVLQSFSRGLDEISSITRGFLGVLSSAFG  247 (349)
Q Consensus       168 v~i~v~R~~~~~~~~~v~p~~~~~~~~~g~~~~~~~igi~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~l~~  247 (349)
T Consensus       126 ---------~~---------------------------------------------------------------------  127 (227)
T cd06164         126 ---------SG---------------------------------------------------------------------  127 (227)
T ss_pred             ---------CC---------------------------------------------------------------------
T ss_conf             ---------64---------------------------------------------------------------------


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             42002246673012233345653050347899999999999996306472243699999998882786999999999999
Q gi|254780773|r  248 KDTRLNQISGPVGIARIAKNFFDHGFNAYIAFLAMFSWAIGFMNLLPIPILDGGHLITFLLEMIRGKSLGVSVTRVITRM  327 (349)
Q Consensus       248 g~~~~~~lsGPVgIa~~~~~~a~~G~~~~l~~~a~isi~Lg~~NlLPip~LDGG~i~~~~~E~i~gr~i~~~~~~~~~~~  327 (349)
T Consensus       128 --------~~~--------------~~~~~~~l~~~Nl~l~~fNLLP~~PLDGGrilra~lw~~~g~~--~~at~~a~~~  183 (227)
T cd06164         128 --------AGP--------------LGVLLGYLALINLLLAVFNLLPAFPLDGGRVLRALLWRRTGDY--LKATRIAAWV  183 (227)
T ss_pred             --------CHH--------------HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCH--HHHHHHHHHH
T ss_conf             --------407--------------9999999999999999997387888870799999999995779--8999999999


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999999
Q gi|254780773|r  328 GLCIILFLFF  337 (349)
Q Consensus       328 g~~ll~~l~i  337 (349)
T Consensus       184 G~~~a~~l~~  193 (227)
T cd06164         184 GRGFAVLLII  193 (227)
T ss_pred             HHHHHHHHHH
T ss_conf             9999999999