HHsearch alignment for GI: 254780773 and conserved domain: cd06164
>cd06164 S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation. In this subgroup, SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. It has been proposed tha
Probab=99.80 E-value=4.6e-18 Score=144.31 Aligned_cols=148 Identities=31% Similarity=0.560 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCHHEEEEECCCEEEEEEEEEECCEEECCCCCCCHHHHCCCCCC
Q ss_conf 99999999999997337799999849750045530683112786059807999977112111001244550665036842
Q gi|254780773|r 8 LLYTVSLIIIVVIHEFGHYMVARLCNIRVLSFSVGFGPELIGITSRSGVRWKVSLIPLGGYVSFSEDEKDMRSFFCAAPW 87 (349)
Q Consensus 8 ~~~~~~l~~~v~iHE~GH~~~Ar~~gv~V~~FsiGfgp~l~~~~~k~~t~y~i~~~PlGgyV~~~~~e~~~~~f~~~~~~ 87 (349)
T Consensus 46 ~~~a~~lf~sVllHElgHal~Ar~~G~~v~~---------------------I~L~~fGG~a~~~~~~~--------~p~ 96 (227)
T cd06164 46 LAAALLLFASVLLHELGHSLVARRYGIPVRS---------------------ITLFLFGGVARLEREPE--------TPG 96 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC---------------------EEEEEEEEEEECCCCCC--------CHH
T ss_conf 9999999999999999999999992998471---------------------78896351465258999--------967
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCC
Q ss_conf 10134211233321122111011100123333200024567556530014566288887830454001111101467886
Q gi|254780773|r 88 KKILTVLAGPLANCVMAILFFTFFFYNTGVMKPVVSNVSPASPAAIAGVKKGDCIISLDGITVSAFEEVAPYVRENPLHE 167 (349)
Q Consensus 88 ~R~~i~~AGp~~N~ilA~iif~~~~~~~g~~~p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~~dl~~~i~~~~g~~ 167 (349)
T Consensus 97 ~e~~Ia~AGPl~n~~l~~~~~~l~~~~~~--------------------------------------------------- 125 (227)
T cd06164 97 QEFVIAIAGPLVSLVLALLFLLLSLALPG--------------------------------------------------- 125 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCC---------------------------------------------------
T ss_conf 77266440178999999999999987455---------------------------------------------------
Q ss_pred CEEEEEECCCCEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCCCC
Q ss_conf 31699965873131011211005654310000122034444321233345668887689888655422310000000255
Q gi|254780773|r 168 ISLVLYREHVGVLHLKVMPRLQDTVDRFGIKRQVPSVGISFSYDETKLHSRTVLQSFSRGLDEISSITRGFLGVLSSAFG 247 (349)
Q Consensus 168 v~i~v~R~~~~~~~~~v~p~~~~~~~~~g~~~~~~~igi~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~l~~ 247 (349)
T Consensus 126 ---------~~--------------------------------------------------------------------- 127 (227)
T cd06164 126 ---------SG--------------------------------------------------------------------- 127 (227)
T ss_pred ---------CC---------------------------------------------------------------------
T ss_conf ---------64---------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 42002246673012233345653050347899999999999996306472243699999998882786999999999999
Q gi|254780773|r 248 KDTRLNQISGPVGIARIAKNFFDHGFNAYIAFLAMFSWAIGFMNLLPIPILDGGHLITFLLEMIRGKSLGVSVTRVITRM 327 (349)
Q Consensus 248 g~~~~~~lsGPVgIa~~~~~~a~~G~~~~l~~~a~isi~Lg~~NlLPip~LDGG~i~~~~~E~i~gr~i~~~~~~~~~~~ 327 (349)
T Consensus 128 --------~~~--------------~~~~~~~l~~~Nl~l~~fNLLP~~PLDGGrilra~lw~~~g~~--~~at~~a~~~ 183 (227)
T cd06164 128 --------AGP--------------LGVLLGYLALINLLLAVFNLLPAFPLDGGRVLRALLWRRTGDY--LKATRIAAWV 183 (227)
T ss_pred --------CHH--------------HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCH--HHHHHHHHHH
T ss_conf --------407--------------9999999999999999997387888870799999999995779--8999999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q gi|254780773|r 328 GLCIILFLFF 337 (349)
Q Consensus 328 g~~ll~~l~i 337 (349)
T Consensus 184 G~~~a~~l~~ 193 (227)
T cd06164 184 GRGFAVLLII 193 (227)
T ss_pred HHHHHHHHHH
T ss_conf 9999999999