HHsearch results for GI: 254780773 and protein with PDBid: 1fc6_A

>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Probab=97.53  E-value=0.00013  Score=50.09  Aligned_cols=59  Identities=27%  Similarity=0.455  Sum_probs=49.0

Q ss_pred             CCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCCC
Q ss_conf             2000245675565300145662888878304540--0111110146788631699965873
Q gi|254780773|r  120 PVVSNVSPASPAAIAGVKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHVG  178 (349)
Q Consensus       120 p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~~  178 (349)
                      ..+..+.++|||++||+++||+|+++||.++...  .+....++..++.++.+++.|....
T Consensus       101 ~~~~~~~~~spa~~agl~~Gd~i~~v~~~~~~~~~~~~~~~ll~g~~g~~v~l~~~~~~~~  161 (388)
T 1fc6_A          101 VVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGAP  161 (388)
T ss_dssp             EEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETTEE
T ss_pred             EEEEECCCCCCHHHCCCCCCCCEEEECCCEEEEEEHHHHHHHHCCCCCCEEEEEEEECCCC
T ss_conf             9999468999167668856762564068221230088899985377885599998204788