HHsearch results for GI: 254780773 and protein with PDBid: 1fc6_A
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Probab=97.53 E-value=0.00013 Score=50.09 Aligned_cols=59 Identities=27% Similarity=0.455 Sum_probs=49.0
Q ss_pred CCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCCC
Q ss_conf 2000245675565300145662888878304540--0111110146788631699965873
Q gi|254780773|r 120 PVVSNVSPASPAAIAGVKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHVG 178 (349)
Q Consensus 120 p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~~ 178 (349)
..+..+.++|||++||+++||+|+++||.++... .+....++..++.++.+++.|....
T Consensus 101 ~~~~~~~~~spa~~agl~~Gd~i~~v~~~~~~~~~~~~~~~ll~g~~g~~v~l~~~~~~~~ 161 (388)
T 1fc6_A 101 VVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGAP 161 (388)
T ss_dssp EEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHCCCCCCCCEEEECCCEEEEEEHHHHHHHHCCCCCCEEEEEEEECCCC
T ss_conf 9999468999167668856762564068221230088899985377885599998204788