HHsearch results for GI: 254780773 and protein with PDBid: 1u3b_A
>1u3b_A Amyloid beta A4 precursor protein-binding, family A, member 1; X11S/mints, PDZ domain, scaffold protein, protein trafficking, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 2yt8_A
Probab=97.93 E-value=9.9e-06 Score=57.75 Aligned_cols=59 Identities=20% Similarity=0.304 Sum_probs=50.8
Q ss_pred CCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCC
Q ss_conf 332000245675565300145662888878304540--011111014678863169996587
Q gi|254780773|r 118 MKPVVSNVSPASPAAIAGVKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHV 177 (349)
Q Consensus 118 ~~p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349)
..+.+..+.++|||+.+||++||+|++|||+++.++ +++.+.+++++ .++++++.+...
T Consensus 112 ~~~~v~~v~~g~~A~~~gL~~GD~Il~VNG~~v~~~s~~e~~~ll~~~~-~~v~l~V~p~~~ 172 (185)
T 1u3b_A 112 QNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAV-GEIHMKTMPAAM 172 (185)
T ss_dssp ETTEEEEECTTSHHHHHTCCTTEEEEEETTEECTTSCHHHHHHHHHTCC-EEEEEEEEECSC
T ss_pred CCCEEEEEECCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHHCC-CEEEEEEEECCH
T ss_conf 5965996525885765789989999999998998999999999998199-959999950614