HHsearch results for GI: 254780773 and protein with PDBid: 1v5q_A
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=97.94 E-value=5.5e-06 Score=59.50 Aligned_cols=55 Identities=27% Similarity=0.525 Sum_probs=44.7
Q ss_pred CCCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCC--CHHHHHHCCCCCCCCCEEEEEE
Q ss_conf 32000245675565300-14566288887830454--0011111014678863169996
Q gi|254780773|r 119 KPVVSNVSPASPAAIAG-VKKGDCIISLDGITVSA--FEEVAPYVRENPLHEISLVLYR 174 (349)
Q Consensus 119 ~p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s--~~dl~~~i~~~~g~~v~i~v~R 174 (349)
..+|..|.|+|||+++| |++||+|++|||+++.+ .+|+.+.+++.+ +...+++.+
T Consensus 46 ~i~V~~i~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~e~~~~l~~~~-~~~~l~l~~ 103 (122)
T 1v5q_A 46 PPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSS-ITSKVTLEI 103 (122)
T ss_dssp CCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHHT-TTTCEEEEE
T ss_pred CEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHCC-CCEEEEEEE
T ss_conf 9499998999979970998789999999999999997999999998189-950899999