HHsearch results for GI: 254780773 and protein with PDBid: 1v6b_A

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.13  E-value=1.8e-06  Score=62.93  Aligned_cols=60  Identities=30%  Similarity=0.302  Sum_probs=49.9

Q ss_pred             CCCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCC--CHHHHHHCCC---CCCCCCEEEEEECCCC
Q ss_conf             32000245675565300-14566288887830454--0011111014---6788631699965873
Q gi|254780773|r  119 KPVVSNVSPASPAAIAG-VKKGDCIISLDGITVSA--FEEVAPYVRE---NPLHEISLVLYREHVG  178 (349)
Q Consensus       119 ~p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s--~~dl~~~i~~---~~g~~v~i~v~R~~~~  178 (349)
                      ..+|.+|.++|||+++| |++||+|++|||+++.+  .+|..+.+++   +.+..+++++.|....
T Consensus        44 ~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~l~~a~~~~~~~v~l~v~r~pp~  109 (118)
T 1v6b_A           44 KVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCPPK  109 (118)
T ss_dssp             SEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCSEEEEEEECCCSC
T ss_pred             CEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCC
T ss_conf             999999899998998099987999999999998899799999999864347999899999838988