HHsearch results for GI: 254780773 and protein with PDBid: 2d90_A

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.36  E-value=2.1e-07  Score=69.22  Aligned_cols=60  Identities=23%  Similarity=0.519  Sum_probs=49.9

Q ss_pred             CCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCH--HHHHHCCCCCCCCCEEEEEECCCC
Q ss_conf             3320002456755653001456628888783045400--111110146788631699965873
Q gi|254780773|r  118 MKPVVSNVSPASPAAIAGVKKGDCIISLDGITVSAFE--EVAPYVRENPLHEISLVLYREHVG  178 (349)
Q Consensus       118 ~~p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~~--dl~~~i~~~~g~~v~i~v~R~~~~  178 (349)
                      ...+|..|.++|||+++||++||+|++|||+++.++.  |+.+.+++. ++.+++++.|...+
T Consensus        30 ~g~~V~~v~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~ev~~~i~~~-~~~v~l~V~~~~~~   91 (102)
T 2d90_A           30 KGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKG-GDQTTLLVLDKEAE   91 (102)
T ss_dssp             SSEEEECCCTTSTTTTTTCCTTCEEEEESSCBCTTSCHHHHHHHHHHS-TTEEEEEECSTTCC
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEECCCCC
T ss_conf             998999989999899869988999999999998999899999999749-99699999978984