HHsearch results for GI: 254780773 and protein with PDBid: 2qt5_A

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=98.49  E-value=7.6e-08  Score=72.34  Aligned_cols=59  Identities=27%  Similarity=0.382  Sum_probs=49.8

Q ss_pred             CCCCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCC
Q ss_conf             332000245675565300-145662888878304540--011111014678863169996587
Q gi|254780773|r  118 MKPVVSNVSPASPAAIAG-VKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHV  177 (349)
Q Consensus       118 ~~p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~  177 (349)
                      ..++|.+|.|+|||++|| |++||+|++|||+++.++  ++....++. +++++++++.|+..
T Consensus        33 ~~~~V~~V~~~spA~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~-~~~~v~l~v~~~~~   94 (200)
T 2qt5_A           33 GKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKN-VGERVVLEVEYELP   94 (200)
T ss_dssp             SCSEEEEECTTSHHHHTTSCCTTCEEEEETTEECTTSCHHHHHHHHHT-CCSEEEEEEEEECC
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCCEECCCCHHHHHHHHHC-CCCCEEEEEECCCC
T ss_conf             897999989999789739987897987618966458968999999861-69818987640355