HHsearch results for GI: 254780773 and protein with PDBid: 2yub_A

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.17  E-value=1.5e-06  Score=63.41  Aligned_cols=58  Identities=21%  Similarity=0.358  Sum_probs=49.5

Q ss_pred             CCCCCCCCCCCHHHH--HHCCCCCEEEEECCCCCC--CCHHHHHHCCCCCCCCCEEEEEECCC
Q ss_conf             320002456755653--001456628888783045--40011111014678863169996587
Q gi|254780773|r  119 KPVVSNVSPASPAAI--AGVKKGDCIISLDGITVS--AFEEVAPYVRENPLHEISLVLYREHV  177 (349)
Q Consensus       119 ~p~I~~V~~~spA~~--AGL~~GD~Il~InG~~V~--s~~dl~~~i~~~~g~~v~i~v~R~~~  177 (349)
                      ..+|.+|.|++||++  ++|++||+|++|||+++.  +.++..+.+++. ++.++++|.|+..
T Consensus        45 ~v~V~~v~~~g~A~~~~g~L~~GD~Il~VNg~~v~~~t~~~~~~ll~~~-~~~v~L~V~r~~~  106 (118)
T 2yub_A           45 TVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAIKQT-SQTLQLLIEHDPV  106 (118)
T ss_dssp             EEEEEECCTTTSCTTHHHHCCTTCCEEEESSSBTTTSCHHHHHHHHHCC-SSCEEEEEEECSS
T ss_pred             CEEEEEECCCCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEEECCC
T ss_conf             9899998899809788699999999999899988999899999999748-9969999997997