Query gi|254780773|ref|YP_003065186.1| zinc metallopeptidase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 349 No_of_seqs 200 out of 3136 Neff 8.3 Searched_HMMs 23785 Date Tue May 31 15:36:00 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780773.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3b4r_A Putative zinc metallopr 99.8 7.7E-19 3.2E-23 148.2 13.6 71 9-110 42-112 (224) 2 2zpm_A Regulator of sigma E pr 99.5 7.7E-14 3.2E-18 113.7 6.4 86 118-209 4-89 (91) 3 3id1_A Regulator of sigma E pr 99.3 1.2E-12 5.2E-17 105.4 4.4 68 118-186 2-70 (95) 4 2pzd_A Serine protease HTRA2; 99.2 1.5E-11 6.4E-16 97.8 5.0 71 120-193 37-107 (113) 5 2p3w_A Probable serine proteas 99.2 2.9E-11 1.2E-15 95.9 5.4 71 119-192 36-106 (112) 6 2kl1_A YLBL protein; structure 99.2 3.4E-11 1.4E-15 95.4 5.7 68 120-189 7-75 (94) 7 2joa_A Serine protease HTRA1; 99.1 2.9E-11 1.2E-15 95.9 4.4 67 120-189 37-103 (105) 8 3i18_A LMO2051 protein; alpha- 99.1 7.7E-11 3.2E-15 93.0 6.4 81 120-209 9-90 (100) 9 2kjp_A Uncharacterized protein 99.1 3.6E-11 1.5E-15 95.3 4.6 66 121-188 4-70 (91) 10 1lcy_A HTRA2 serine protease; 99.1 7.3E-11 3.1E-15 93.2 5.7 66 121-189 259-324 (325) 11 2ytw_A Serine protease HTRA1; 99.1 8.6E-11 3.6E-15 92.7 4.9 67 120-189 50-116 (118) 12 2hga_A Conserved protein MTH13 99.1 1E-10 4.3E-15 92.1 4.6 66 120-187 27-93 (125) 13 1y8t_A Hypothetical protein RV 99.0 1.3E-10 5.4E-15 91.5 4.8 66 121-186 245-311 (324) 14 1te0_A Protease DEGS; two doma 98.9 7.3E-10 3.1E-14 86.3 4.5 64 121-185 247-311 (318) 15 2i4s_A General secretion pathw 98.9 1.4E-09 5.9E-14 84.3 4.8 63 121-184 40-103 (105) 16 1ky9_A Protease DO, DEGP, HTRA 98.9 1E-09 4.2E-14 85.3 4.0 65 121-186 289-354 (448) 17 2i6v_A General secretion pathw 98.8 2.2E-09 9.2E-14 83.0 4.4 63 121-184 22-85 (87) 18 2vz5_A TAX1-binding protein 3; 98.8 2.3E-09 9.7E-14 82.8 4.0 98 81-178 18-126 (139) 19 2vsv_A Rhophilin-2; scaffold p 98.7 7.1E-09 3E-13 79.4 4.8 63 116-178 42-106 (109) 20 2yuy_A RHO GTPase activating p 98.7 3.4E-09 1.4E-13 81.7 2.6 59 119-178 62-122 (126) 21 1ky9_A Protease DO, DEGP, HTRA 98.6 3.9E-09 1.6E-13 81.3 0.0 57 121-178 386-442 (448) 22 1wh1_A KIAA1095 protein; PDZ d 98.6 7.3E-08 3.1E-12 72.4 6.1 60 120-179 50-110 (124) 23 1p1d_A PDZ45, glutamate recept 98.6 3.9E-08 1.6E-12 74.3 4.1 86 89-176 8-98 (196) 24 1vae_A Rhophilin 2, rhophilin, 98.6 4E-08 1.7E-12 74.2 4.1 61 116-176 34-96 (111) 25 1w9e_A Syntenin 1; cell adhesi 98.5 6.7E-08 2.8E-12 72.7 4.9 60 119-178 28-89 (166) 26 2q3g_A PDZ and LIM domain prot 98.5 6.7E-08 2.8E-12 72.7 4.5 58 119-177 28-87 (89) 27 2pkt_A PDZ and LIM domain prot 98.5 7.6E-08 3.2E-12 72.4 4.5 58 120-178 29-88 (91) 28 2kom_A Partitioning defective 98.5 8.8E-08 3.7E-12 71.9 4.8 59 118-176 58-120 (121) 29 2pa1_A PDZ and LIM domain prot 98.5 1.1E-07 4.8E-12 71.1 5.3 57 119-176 27-85 (87) 30 1rgw_A ZAsp protein; PDZ, cyph 98.5 8.2E-08 3.5E-12 72.1 4.5 56 120-176 27-84 (85) 31 2eaq_A LIM domain only protein 98.5 3.7E-08 1.6E-12 74.5 2.7 60 118-177 28-90 (90) 32 2v90_A PDZ domain-containing p 98.5 7.2E-08 3E-12 72.5 4.1 61 118-179 30-92 (96) 33 2qt5_A Glutamate receptor-inte 98.5 7.6E-08 3.2E-12 72.3 4.1 59 118-177 33-94 (200) 34 3khf_A Microtubule-associated 98.5 9.2E-08 3.9E-12 71.8 4.5 57 120-177 36-94 (99) 35 2f5y_A Regulator of G-protein 98.5 1.2E-07 5.1E-12 70.9 4.9 61 116-177 22-84 (91) 36 2qt5_A Glutamate receptor-inte 98.5 1.1E-07 4.8E-12 71.1 4.7 57 120-177 137-196 (200) 37 1whd_A RGS3, regulator of G-pr 98.5 1.7E-07 7.3E-12 69.9 5.4 61 116-177 34-96 (100) 38 2w4f_A Protein LAP4; structura 98.5 1.1E-07 4.7E-12 71.2 4.2 56 121-177 37-94 (97) 39 3gsl_A Disks large homolog 4; 98.5 1.1E-07 4.5E-12 71.3 4.1 57 121-178 38-97 (196) 40 3ngh_A PDZ domain-containing p 98.5 7.3E-08 3.1E-12 72.5 3.2 59 118-177 26-86 (106) 41 2uzc_A Human pdlim5, PDZ and L 98.4 1.3E-07 5.6E-12 70.7 4.4 58 119-177 28-87 (88) 42 2ego_A General receptor for ph 98.4 1.1E-07 4.8E-12 71.1 3.8 55 120-175 39-95 (96) 43 1x5q_A LAP4 protein; PDZ domai 98.4 1.7E-07 7.4E-12 69.8 4.6 57 120-177 48-106 (110) 44 1p1d_A PDZ45, glutamate recept 98.4 1.7E-07 7E-12 70.0 4.4 57 120-177 137-196 (196) 45 2vsp_A PDZ domain-containing p 98.4 2.4E-07 1E-11 68.9 5.1 61 115-176 24-86 (91) 46 1g9o_A NHE-RF; PDZ domain, com 98.4 2E-07 8.4E-12 69.4 4.5 60 118-178 27-88 (91) 47 1t2m_A AF-6 protein; chromosom 98.4 1.8E-07 7.7E-12 69.7 4.2 57 121-178 35-94 (101) 48 1m5z_A GRIP, AMPA receptor int 98.4 2E-07 8.3E-12 69.5 4.4 56 119-175 33-90 (91) 49 2kjd_A Sodium/hydrogen exchang 98.4 1.7E-07 7.4E-12 69.8 4.0 58 119-177 34-93 (128) 50 2he4_A Na(+)/H(+) exchange reg 98.4 2.3E-07 9.6E-12 69.0 4.6 60 117-177 27-88 (90) 51 1q3o_A Shank1; PDZ, GKAP, pept 98.4 1.6E-07 6.8E-12 70.1 3.8 57 120-177 47-105 (109) 52 3k1r_A Harmonin; protein-prote 98.4 2.2E-07 9.3E-12 69.1 4.4 56 120-177 112-169 (192) 53 2fne_A Multiple PDZ domain pro 98.4 2.4E-07 1E-11 68.9 4.5 58 119-177 54-114 (117) 54 1wif_A RSGI RUH-020, riken cDN 98.4 2.5E-07 1.1E-11 68.7 4.6 60 119-178 50-113 (126) 55 1vb7_A PDZ and LIM domain 2; P 98.4 2.9E-07 1.2E-11 68.3 4.6 58 119-177 31-90 (94) 56 2vwr_A Ligand of NUMB protein 98.4 2.5E-07 1E-11 68.8 4.2 59 119-178 30-91 (95) 57 2iwn_A Multiple PDZ domain pro 98.4 2.1E-07 8.6E-12 69.4 3.7 57 120-177 35-94 (97) 58 2edz_A PDZ domain-containing p 98.4 1.7E-07 7.2E-12 69.9 3.3 59 118-177 38-98 (114) 59 2d90_A PDZ domain containing p 98.4 2.1E-07 9E-12 69.2 3.7 60 118-178 30-91 (102) 60 3l4f_D SH3 and multiple ankyri 98.4 2.9E-07 1.2E-11 68.3 4.4 57 120-177 67-125 (132) 61 3egg_C Spinophilin; PP1, serin 98.3 2.4E-07 1E-11 68.9 3.8 55 120-175 113-170 (170) 62 2eeh_A PDZ domain-containing p 98.3 3.9E-07 1.6E-11 67.4 4.8 56 120-177 38-95 (100) 63 2byg_A Channel associated prot 98.3 2.7E-07 1.1E-11 68.6 3.9 57 119-176 55-114 (117) 64 2rcz_A Tight junction protein 98.3 2.7E-07 1.1E-11 68.6 3.9 56 120-176 23-81 (81) 65 3cyy_A Tight junction protein 98.3 2.6E-07 1.1E-11 68.7 3.8 58 120-178 25-85 (92) 66 3e17_A Tight junction protein 98.3 1.7E-07 7.3E-12 69.9 2.9 57 120-177 23-82 (88) 67 3k50_A Putative S41 protease; 98.3 1.9E-06 7.8E-11 62.8 8.2 36 120-155 92-127 (403) 68 2eeg_A PDZ and LIM domain prot 98.3 4.6E-07 1.9E-11 66.9 5.0 58 119-177 33-92 (94) 69 1qau_A Neuronal nitric oxide s 98.3 4.6E-07 1.9E-11 67.0 5.0 59 119-177 27-88 (112) 70 2r4h_A Membrane-associated gua 98.3 2.6E-07 1.1E-11 68.7 3.7 58 119-177 50-110 (112) 71 1ihj_A INAD; intermolecular di 98.3 2.8E-07 1.2E-11 68.4 3.9 56 120-176 39-97 (98) 72 2fcf_A Multiple PDZ domain pro 98.3 3.3E-07 1.4E-11 67.9 4.3 57 120-177 41-100 (103) 73 2awx_A Synapse associated prot 98.3 3.4E-07 1.4E-11 67.9 4.3 57 120-177 35-94 (105) 74 1wha_A KIAA0147 protein, scrib 98.3 5E-07 2.1E-11 66.7 5.1 57 120-177 40-99 (105) 75 1wf7_A Enigma homologue protei 98.3 4.3E-07 1.8E-11 67.2 4.5 59 119-178 30-90 (103) 76 2jil_A GRIP1 protein, glutamat 98.3 3.7E-07 1.6E-11 67.6 4.2 58 120-178 34-94 (97) 77 1ueq_A Membrane associated gua 98.3 4.5E-07 1.9E-11 67.0 4.6 59 119-177 45-107 (123) 78 2fe5_A Presynaptic protein SAP 98.3 4.6E-07 1.9E-11 66.9 4.6 57 119-176 34-93 (94) 79 2i04_A Membrane-associated gua 98.3 4.4E-07 1.8E-11 67.1 4.4 55 120-174 27-85 (85) 80 1v5l_A PDZ and LIM domain 3; a 98.3 3.9E-07 1.6E-11 67.5 4.1 59 119-178 30-90 (103) 81 1d5g_A Human phosphatase HPTP1 98.3 4.6E-07 1.9E-11 66.9 4.4 57 120-177 35-94 (96) 82 1uew_A Membrane associated gua 98.3 2.9E-07 1.2E-11 68.3 3.4 58 119-177 44-104 (114) 83 2eei_A PDZ domain-containing p 98.3 3.7E-07 1.5E-11 67.6 3.6 62 116-178 30-93 (106) 84 2d92_A INAD-like protein; PDZ 98.3 4.2E-07 1.7E-11 67.2 3.8 57 120-176 46-105 (108) 85 2edv_A FERM and PDZ domain-con 98.3 7.4E-07 3.1E-11 65.5 5.0 60 116-177 29-90 (96) 86 2jxo_A Ezrin-radixin-moesin-bi 98.3 2.6E-07 1.1E-11 68.7 2.6 59 117-176 32-92 (98) 87 2iwq_A Multiple PDZ domain pro 98.3 4.8E-07 2E-11 66.8 3.9 56 120-176 61-119 (123) 88 2db5_A INAD-like protein; PDZ 98.3 7.1E-07 3E-11 65.6 4.8 58 119-177 55-116 (128) 89 2jik_A Synaptojanin-2 binding 98.3 6.4E-07 2.7E-11 66.0 4.5 59 119-178 38-99 (101) 90 1uf1_A KIAA1526 protein; PDZ d 98.3 5.9E-07 2.5E-11 66.2 4.3 56 120-177 48-105 (128) 91 2e7k_A Maguk P55 subfamily mem 98.3 7E-07 2.9E-11 65.7 4.6 57 119-176 30-88 (91) 92 2opg_A Multiple PDZ domain pro 98.3 8.3E-07 3.5E-11 65.2 5.0 59 119-178 31-92 (98) 93 1wfg_A Regulating synaptic mem 98.3 6.6E-07 2.8E-11 65.8 4.4 61 117-177 64-128 (131) 94 2dmz_A INAD-like protein; PDZ 98.3 7.2E-07 3E-11 65.6 4.6 58 120-178 48-108 (129) 95 2dlu_A INAD-like protein; PDZ 98.3 6E-07 2.5E-11 66.2 4.1 62 120-182 40-104 (111) 96 3gsl_A Disks large homolog 4; 98.3 9.7E-07 4.1E-11 64.7 5.1 58 120-178 132-192 (196) 97 3b76_A E3 ubiquitin-protein li 98.3 5.9E-07 2.5E-11 66.2 4.0 57 120-177 55-114 (118) 98 1uit_A Human discs large 5 pro 98.3 6.6E-07 2.8E-11 65.8 4.3 58 119-177 43-102 (117) 99 1u3b_A Amyloid beta A4 precurs 98.2 6.2E-07 2.6E-11 66.0 4.0 44 120-163 31-77 (185) 100 2koj_A Partitioning defective 98.2 8.2E-07 3.5E-11 65.2 4.6 61 118-178 39-103 (111) 101 1wf8_A Neurabin-I; PDZ domain, 98.2 5.7E-07 2.4E-11 66.3 3.8 57 120-177 42-101 (107) 102 2g5m_B Neurabin-2; spinophilin 98.2 1.1E-06 4.6E-11 64.3 5.1 57 120-177 37-96 (113) 103 2i1n_A Discs, large homolog 3; 98.2 7.3E-07 3.1E-11 65.5 4.2 57 120-177 36-95 (102) 104 2ejy_A 55 kDa erythrocyte memb 98.2 6.3E-07 2.6E-11 66.0 3.8 56 120-176 38-96 (97) 105 1u37_A Amyloid beta A4 precurs 98.2 8.2E-07 3.4E-11 65.2 4.3 56 119-174 30-89 (89) 106 1uez_A KIAA1526 protein; PDZ d 98.2 7E-07 2.9E-11 65.7 4.0 56 120-177 37-94 (101) 107 2o2t_A Multiple PDZ domain pro 98.2 6.9E-07 2.9E-11 65.7 3.9 56 120-176 51-110 (117) 108 1wi2_A Riken cDNA 2700099C19; 98.2 6.7E-07 2.8E-11 65.8 3.8 55 120-176 43-99 (104) 109 1y7n_A Amyloid beta A4 precurs 98.2 6.1E-07 2.6E-11 66.1 3.6 53 120-173 33-87 (90) 110 1u39_A Amyloid beta A4 precurs 98.2 4.6E-07 1.9E-11 67.0 2.9 54 119-173 23-78 (80) 111 2krg_A Na(+)/H(+) exchange reg 98.2 3.1E-07 1.3E-11 68.1 2.0 57 119-176 34-92 (216) 112 2iwo_A Multiple PDZ domain pro 98.2 7.3E-07 3.1E-11 65.6 3.9 58 120-178 55-115 (120) 113 2dls_A PDZ-rhogef, RHO guanine 98.2 1E-06 4.4E-11 64.5 4.6 58 118-177 29-88 (93) 114 1uhp_A Hypothetical protein KI 98.2 1.1E-06 4.5E-11 64.4 4.6 56 121-177 44-102 (107) 115 1ujd_A KIAA0559 protein; PDZ d 98.2 9.1E-07 3.8E-11 64.9 4.3 57 120-177 51-110 (117) 116 1i16_A Interleukin 16, LCF; cy 98.2 5.5E-07 2.3E-11 66.4 3.0 60 119-178 58-120 (130) 117 1um1_A KIAA1849 protein, RSGI 98.2 1.1E-06 4.5E-11 64.4 4.4 57 121-178 39-98 (110) 118 1b8q_A Protein (neuronal nitri 98.2 1.2E-06 5.1E-11 64.1 4.6 57 120-176 35-94 (127) 119 1qav_A Alpha-1 syntrophin (res 98.2 9.7E-07 4.1E-11 64.7 4.1 56 119-175 31-89 (90) 120 2qg1_A Multiple PDZ domain pro 98.2 9.9E-07 4.2E-11 64.7 4.0 58 119-177 30-90 (92) 121 2z17_A Pleckstrin homology SEC 98.2 4.2E-07 1.8E-11 67.2 2.0 53 119-172 49-103 (104) 122 1r6j_A Syntenin 1; PDZ, membra 98.2 8.5E-07 3.6E-11 65.1 3.6 53 121-174 26-80 (82) 123 2jre_A C60-1 PDZ domain peptid 98.2 8.2E-07 3.5E-11 65.2 3.3 56 120-176 46-104 (108) 124 2yub_A LIMK-2, LIM domain kina 98.2 1.5E-06 6.3E-11 63.4 4.7 58 119-177 45-106 (118) 125 1n7e_A AMPA receptor interacti 98.2 1.5E-06 6.3E-11 63.4 4.4 57 120-177 32-91 (97) 126 1kwa_A Hcask/LIN-2 protein; PD 98.2 1.1E-06 4.4E-11 64.5 3.5 57 119-176 26-85 (88) 127 2edp_A Fragment, shroom family 98.1 2.3E-06 9.7E-11 62.1 5.2 58 119-177 36-95 (100) 128 2ehr_A INAD-like protein; PDZ 98.1 1.2E-06 5.1E-11 64.0 3.8 57 120-177 52-111 (117) 129 2q9v_A Membrane-associated gua 98.1 5.8E-07 2.4E-11 66.3 2.1 56 120-175 29-88 (90) 130 1uju_A Scribble; PDZ domain, c 98.1 4.2E-07 1.8E-11 67.2 1.4 56 121-177 47-105 (111) 131 2gzv_A PRKCA-binding protein; 98.1 1.2E-06 5.2E-11 64.0 3.8 58 118-176 50-110 (114) 132 1q7x_A PDZ2B domain of PTP-BAS 98.1 1.3E-06 5.7E-11 63.7 3.9 56 121-177 45-103 (108) 133 2dm8_A INAD-like protein; PDZ 98.1 2.2E-06 9.2E-11 62.3 4.9 58 120-178 45-105 (116) 134 2qkv_A Inactivation-NO-after-p 98.1 1.3E-06 5.5E-11 63.8 3.7 57 119-176 32-91 (96) 135 1v6b_A Harmonin isoform A1; st 98.1 1.8E-06 7.4E-11 62.9 4.3 60 119-178 44-109 (118) 136 2eno_A Synaptojanin-2-binding 98.1 1.3E-06 5.6E-11 63.8 3.5 57 120-177 49-108 (120) 137 2kpk_A Membrane-associated gua 98.1 1.6E-06 6.6E-11 63.3 3.7 57 120-176 45-105 (129) 138 3kzd_A TIAM-1, T-lymphoma inva 98.1 1.9E-06 7.8E-11 62.7 4.1 52 120-174 37-90 (94) 139 2daz_A INAD-like protein; PDZ 98.1 1.4E-06 6E-11 63.6 3.4 60 119-179 52-114 (124) 140 2dc2_A GOPC, golgi associated 98.1 1.9E-06 8.2E-11 62.6 4.0 56 120-176 37-95 (103) 141 1k32_A Tricorn protease; prote 98.1 4.5E-06 1.9E-10 60.1 5.8 62 125-186 763-825 (1045) 142 2djt_A Unnamed protein product 98.1 1.3E-06 5.3E-11 63.9 2.9 56 120-176 40-98 (104) 143 1wfv_A Membrane associated gua 98.1 1.8E-06 7.5E-11 62.9 3.7 58 119-177 37-97 (103) 144 1um7_A Synapse-associated prot 98.1 3E-06 1.3E-10 61.3 4.8 59 118-177 39-100 (113) 145 1nf3_C PAR-6B; semi-CRIB motif 98.1 2.5E-06 1E-10 61.9 4.3 55 121-176 68-125 (128) 146 3i4w_A Disks large homolog 4; 98.1 2.3E-06 9.5E-11 62.2 4.1 59 118-177 35-96 (104) 147 3gge_A PDZ domain-containing p 98.1 4E-06 1.7E-10 60.5 5.1 61 117-177 27-91 (95) 148 1v62_A KIAA1719 protein; struc 98.1 2.4E-06 1E-10 62.0 3.9 59 119-178 43-104 (117) 149 1wg6_A Hypothetical protein (r 98.1 1.9E-06 8.1E-11 62.6 3.2 57 120-176 57-122 (127) 150 1x6d_A Interleukin-16; PDZ dom 98.0 2.6E-06 1.1E-10 61.8 3.8 57 119-175 43-102 (119) 151 1mfg_A ERB-B2 interacting prot 98.0 2.2E-06 9.3E-11 62.2 3.5 55 120-176 37-93 (95) 152 1tp5_A Presynaptic density pro 98.0 3E-06 1.3E-10 61.3 4.2 59 118-177 38-99 (119) 153 2yt7_A Amyloid beta A4 precurs 98.0 2.2E-06 9.1E-11 62.3 3.3 57 119-175 38-98 (101) 154 3hpk_A Protein interacting wit 98.0 3.1E-06 1.3E-10 61.2 4.1 59 119-178 46-107 (125) 155 2d8i_A T-cell lymphoma invasio 98.0 3.4E-06 1.4E-10 61.0 4.2 54 118-174 44-99 (114) 156 3cbz_A Dishevelled-2; PDZ doma 98.0 2.3E-06 9.9E-11 62.1 3.4 59 120-178 35-98 (108) 157 2dkr_A LIN-7 homolog B; LIN-7B 98.0 2.1E-06 8.8E-11 62.4 2.8 56 120-176 32-90 (93) 158 1uep_A Membrane associated gua 98.0 2.7E-06 1.1E-10 61.6 3.4 59 119-177 35-97 (103) 159 2h2b_A Tight junction protein 98.0 3.9E-06 1.6E-10 60.6 4.1 58 119-178 40-99 (107) 160 1va8_A Maguk P55 subfamily mem 98.0 3.4E-06 1.4E-10 61.0 3.5 57 119-176 49-108 (113) 161 1wi4_A Synip, syntaxin binding 98.0 4.8E-06 2E-10 59.9 4.2 57 120-176 43-105 (109) 162 2csj_A TJP2 protein; PDZ domai 98.0 4.2E-06 1.8E-10 60.3 3.7 56 120-177 48-105 (117) 163 1z87_A Alpha-1-syntrophin; pro 98.0 6.4E-06 2.7E-10 59.0 4.7 58 119-177 104-164 (263) 164 1v5q_A GRIP1 homolog, glutamat 97.9 5.5E-06 2.3E-10 59.5 3.9 55 119-174 46-103 (122) 165 1u3b_A Amyloid beta A4 precurs 97.9 9.9E-06 4.2E-10 57.8 5.1 59 118-177 112-172 (185) 166 1n7t_A 99-MER peptide of densi 97.9 4.6E-06 1.9E-10 60.1 3.3 54 121-176 46-101 (103) 167 2vph_A Tyrosine-protein phosph 97.9 7.6E-06 3.2E-10 58.5 4.1 58 119-176 31-95 (100) 168 1x5n_A Harmonin; PDZ domain, u 97.9 3.9E-06 1.6E-10 60.5 2.6 56 120-177 43-100 (114) 169 3o46_A Maguk P55 subfamily mem 97.9 6.1E-06 2.6E-10 59.2 3.4 57 119-176 29-88 (93) 170 1ufx_A KIAA1526 protein; PDZ d 97.9 3.7E-06 1.6E-10 60.7 2.2 59 118-176 32-97 (103) 171 1x45_A Amyloid beta (A4) precu 97.9 1.2E-05 4.9E-10 57.3 4.5 57 119-175 34-94 (98) 172 3bpu_A Membrane-associated gua 97.8 1.6E-05 6.7E-10 56.3 3.9 54 121-176 30-86 (88) 173 2cs5_A Tyrosine-protein phosph 97.7 2.7E-05 1.2E-09 54.7 4.3 56 119-174 42-104 (119) 174 1ujv_A Membrane associated gua 97.6 3.1E-05 1.3E-09 54.3 3.6 50 128-177 40-92 (96) 175 1fc6_A Photosystem II D1 prote 97.5 0.00013 5.4E-09 50.1 5.7 59 120-178 101-161 (388) 176 2qbw_A PDZ-fibronectin fusion 97.2 0.00031 1.3E-08 47.4 4.0 55 121-177 27-83 (195) 177 1w9e_A Syntenin 1; cell adhesi 96.4 0.0022 9.4E-08 41.5 3.7 54 120-174 109-164 (166) 178 2ce7_A Cell division protein F 93.9 0.019 8E-07 35.1 1.8 14 18-31 275-288 (476) 179 2di4_A Zinc protease, cell div 90.9 0.061 2.6E-06 31.6 1.2 67 17-102 18-86 (238) 180 1hv5_A Stromelysin 3; inhibiti 80.0 0.54 2.3E-05 25.1 1.4 11 49-60 8-18 (165) 181 1bqb_A Protein (aureolysin); h 79.9 0.69 2.9E-05 24.3 1.9 14 55-68 23-36 (301) 182 3ba0_A Macrophage metalloelast 74.6 1 4.3E-05 23.2 1.6 15 17-31 109-123 (365) 183 1eak_A 72 kDa type IV collagen 70.4 1.4 5.7E-05 22.3 1.4 31 29-62 68-99 (421) 184 1g9k_A Serralysin; beta jelly 68.1 2.1 8.7E-05 21.1 1.9 13 15-27 163-175 (463) 185 1kap_P Alkaline protease; calc 67.8 2.1 8.9E-05 21.0 1.9 13 15-27 179-191 (479) 186 2vqx_A Metalloproteinase; ther 67.3 2.2 9.2E-05 20.9 1.9 10 271-280 267-276 (341) 187 2o3e_A Neurolysin; thermolysin 65.9 2.4 0.0001 20.6 1.9 16 304-319 655-670 (678) 188 1ck7_A Protein (gelatinase A); 62.7 3 0.00013 19.9 1.9 12 16-27 369-380 (631) 189 1k7i_A PROC, secreted protease 62.3 3.1 0.00013 19.8 1.9 13 15-27 182-194 (479) 190 3ce2_A Putative peptidase; str 61.6 3 0.00013 19.9 1.8 12 258-269 425-436 (618) 191 3ahn_A Oligopeptidase, PZ pept 60.5 3.2 0.00014 19.7 1.8 12 136-147 264-275 (564) 192 3lq0_A Proastacin; metallopept 59.3 3 0.00013 20.0 1.4 14 135-148 103-116 (235) 193 1l6j_A Matrix metalloproteinas 58.1 3.2 0.00014 19.7 1.4 31 29-62 77-108 (425) 194 3lqb_A Hatching enzyme, LOC792 57.8 3.3 0.00014 19.7 1.4 15 132-146 73-87 (199) 195 1gyt_A Cytosol aminopeptidase; 53.2 2.1 8.9E-05 21.0 -0.2 25 126-151 323-347 (503) 196 2o36_A ThiMet oligopeptidase; 52.8 5.6 0.00024 18.1 1.9 20 300-319 635-654 (674) 197 2qr4_A Peptidase M3B, oligoend 52.0 6.9 0.00029 17.4 2.3 13 258-270 392-404 (587) 198 3nxq_A Angiotensin-converting 51.0 5.7 0.00024 18.0 1.8 10 151-160 259-268 (629) 199 3jru_B Probable cytosol aminop 49.6 2.6 0.00011 20.4 -0.2 27 124-151 313-339 (490) 200 2x96_A Angiotensin converting 47.1 7.2 0.0003 17.3 1.8 19 294-312 443-461 (598) 201 3h8g_F Cytosol aminopeptidase; 46.5 2.9 0.00012 20.0 -0.3 25 126-151 320-344 (497) 202 1tyg_B YJBS; alpha beta barrel 45.4 13 0.00053 15.6 3.0 45 133-177 13-60 (87) 203 3ij3_A Cytosol aminopeptidase; 44.9 3.5 0.00015 19.5 -0.1 28 123-151 300-327 (482) 204 3khi_A Putative metal-dependen 43.6 7.6 0.00032 17.2 1.4 15 146-160 126-140 (267) 205 3dte_A IRRE protein; radiotole 43.1 7.8 0.00033 17.1 1.4 11 20-30 101-111 (301) 206 3kr4_A M17 leucyl aminopeptida 42.6 3.9 0.00017 19.1 -0.2 28 123-151 344-371 (528) 207 3kzw_A Cytosol aminopeptidase; 42.1 3.9 0.00017 19.1 -0.2 26 125-151 335-360 (515) 208 1lam_A Leucine aminopeptidase; 41.6 3.8 0.00016 19.2 -0.3 27 124-151 301-327 (484) 209 1uze_A Angiotensin converting 41.6 9.9 0.00041 16.4 1.8 17 148-164 242-258 (589) 210 2hc9_A Leucine aminopeptidase 39.3 4.7 0.0002 18.6 -0.2 29 122-151 301-329 (491) 211 3hoa_A Thermostable carboxypep 37.5 14 0.00057 15.4 1.9 15 305-319 481-495 (509) 212 3dor_A Protein CT_858, CPAF; m 34.8 9.7 0.00041 16.4 0.8 21 133-153 107-127 (583) 213 3dwc_A TCMCP-1, metallocarboxy 34.4 16 0.00068 14.9 1.9 16 305-320 476-491 (505) 214 1ka2_A M32 carboxypeptidase; h 34.2 16 0.00069 14.8 1.9 16 305-320 474-489 (499) 215 1sat_A Serratia protease; para 34.0 18 0.00076 14.6 2.1 13 15-27 170-182 (471) 216 3hq2_A Bacillus subtilis M32 c 33.1 18 0.00074 14.6 1.9 16 305-320 471-486 (501) 217 1at0_A 17-hedgehog; developmen 29.7 22 0.00092 14.0 2.0 25 133-157 18-42 (145) 218 3o0w_A Calreticulin; jelly rol 23.7 25 0.0011 13.6 1.4 21 66-86 93-113 (273) 219 3ik0_A TS, tsase, thymidylate 22.2 30 0.0013 13.0 2.1 45 131-175 241-287 (316) 220 2g8o_A TS, tsase, thymidylate 20.0 33 0.0014 12.7 2.1 47 130-176 188-236 (264) No 1 >3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii} Probab=99.80 E-value=7.7e-19 Score=148.20 Aligned_cols=71 Identities=25% Similarity=0.535 Sum_probs=55.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCHHEEEEECCCEEEEEEEEEECCEEECCCCCCCHHHHCCCCCCC Q ss_conf 99999999999973377999998497500455306831127860598079999771121110012445506650368421 Q gi|254780773|r 9 LYTVSLIIIVVIHEFGHYMVARLCNIRVLSFSVGFGPELIGITSRSGVRWKVSLIPLGGYVSFSEDEKDMRSFFCAAPWK 88 (349) Q Consensus 9 ~~~~~l~~~v~iHE~GH~~~Ar~~gv~V~~FsiGfgp~l~~~~~k~~t~y~i~~~PlGgyV~~~~~e~~~~~f~~~~~~~ 88 (349) ...+.+.+.+++||+||+++||++|+++++ +..+|+||+.++.+ .++++ T Consensus 42 ~~~l~l~~sv~~HE~gH~~~a~~~G~~~~~---------------------i~l~pfGg~~~~~~----------~~~~~ 90 (224) T 3b4r_A 42 VLFILLFVSVVLHELGHSYVAKKYGVKIEK---------------------ILLLPIGGVAMMDK----------IPKEG 90 (224) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---------------------EEECSSSCBCCCCC----------CCSSS T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCC---------------------EEEEECHHHHCCCC----------CCCCC T ss_conf 999999999999999999999997995374---------------------77761112424656----------78400 Q ss_pred CHHHHHHHHHHHHHHHHHHCCC Q ss_conf 0134211233321122111011 Q gi|254780773|r 89 KILTVLAGPLANCVMAILFFTF 110 (349) Q Consensus 89 R~~i~~AGp~~N~ilA~iif~~ 110 (349) |+.|.+|||++|+++|.+.+.. T Consensus 91 ~~~ialAGPl~n~~la~~~~~~ 112 (224) T 3b4r_A 91 ELRIGIAGPLVSFIIGIVLLIV 112 (224) T ss_dssp HHHHHHHHHHHHHHHHHHHHHH T ss_pred CEEEEEECCHHHHHHHHHHHHH T ss_conf 3245532208899999999987 No 2 >2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A Probab=99.46 E-value=7.7e-14 Score=113.69 Aligned_cols=86 Identities=30% Similarity=0.499 Sum_probs=73.1 Q ss_pred CCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCCEEEECCCCCCCCCCCCCEE Q ss_conf 33200024567556530014566288887830454001111101467886316999658731310112110056543100 Q gi|254780773|r 118 MKPVVSNVSPASPAAIAGVKKGDCIISLDGITVSAFEEVAPYVRENPLHEISLVLYREHVGVLHLKVMPRLQDTVDRFGI 197 (349) Q Consensus 118 ~~p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~~dl~~~i~~~~g~~v~i~v~R~~~~~~~~~v~p~~~~~~~~~g~ 197 (349) .+|+|.+|.++|||++|||++||+|+++||+++++|+|++.+++.++++++++++.|+++ ..+++++|+..+..+ T Consensus 4 ~~pvV~~V~~~spA~~AGl~~GD~I~~ing~~i~~~~~~~~~i~~~~g~~v~l~v~R~g~-~~~~~v~~~~~~~~~---- 78 (91) T 2zpm_A 4 IEPVLENVQPNSAASXAGLQAGDRIVXVDGQPLTQWVTFVMLVRDNPGXSLALEIERQGS-PLSLTLIPESXPGNG---- 78 (91) T ss_dssp --CBCSEECTTSHHHHTTCCTTCEEEEETTEECCCHHHHHHHHHHCTTCCEEEEEEETTE-EEEEEECCEEECCSS---- T ss_pred CCCEEEEECCCCHHHHCCCCCCCEEEEECCEEECCHHHHHHHHHHCCCCCEEEEEEECCE-EEEEEEEEEEECCCC---- T ss_conf 689998999989377658999999999799884899999999983979938999999999-999999996676999---- Q ss_pred EEEEEECCCCCC Q ss_conf 001220344443 Q gi|254780773|r 198 KRQVPSVGISFS 209 (349) Q Consensus 198 ~~~~~~igi~~~ 209 (349) ...+++|+++. T Consensus 79 -~~~g~iGI~P~ 89 (91) T 2zpm_A 79 -XAIGFVGIEPX 89 (91) T ss_dssp -SCEEECCEECC T ss_pred -CEEEEEEEEEE T ss_conf -45999878767 No 3 >3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A Probab=99.30 E-value=1.2e-12 Score=105.38 Aligned_cols=68 Identities=21% Similarity=0.231 Sum_probs=57.3 Q ss_pred CCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCHHHHHH-CCCCCCCCCEEEEEECCCCEEEECCCC Q ss_conf 332000245675565300145662888878304540011111-014678863169996587313101121 Q gi|254780773|r 118 MKPVVSNVSPASPAAIAGVKKGDCIISLDGITVSAFEEVAPY-VRENPLHEISLVLYREHVGVLHLKVMP 186 (349) Q Consensus 118 ~~p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~~dl~~~-i~~~~g~~v~i~v~R~~~~~~~~~v~p 186 (349) .+|+|++|.++|||++|||++||+|++|||++|++|+|+... +...+++.+++++.|++.+. +.++++ T Consensus 2 vkPvV~~V~~~SpA~~AGl~~GD~I~sIng~~v~~~~d~~~~l~~~~~~~~i~i~v~r~~~~~-~~~~~l 70 (95) T 3id1_A 2 VRPVVGEIAANSIAAEAQIAPGTELKAVDGIETPDWDAVRLQLVDKIGDESTTITVAPFGSDQ-RRDVKL 70 (95) T ss_dssp CCCBEEEECTTSHHHHTTCCTTCEEEEETTEECSSHHHHHHHHHHTTTCSEEEEEEECTTCCC-CEEEEE T ss_pred CCCEEEEECCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHHCCCCCEEEEEEEECCCEE-EEEEEE T ss_conf 788784689979899869999999999999973999999998751389984899999999606-999998 No 4 >2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptide-binding module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4 Probab=99.18 E-value=1.5e-11 Score=97.84 Aligned_cols=71 Identities=27% Similarity=0.389 Sum_probs=62.5 Q ss_pred CCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCCEEEECCCCCCCCCCC Q ss_conf 20002456755653001456628888783045400111110146788631699965873131011211005654 Q gi|254780773|r 120 PVVSNVSPASPAAIAGVKKGDCIISLDGITVSAFEEVAPYVRENPLHEISLVLYREHVGVLHLKVMPRLQDTVD 193 (349) Q Consensus 120 p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~~dl~~~i~~~~g~~v~i~v~R~~~~~~~~~v~p~~~~~~~ 193 (349) .+|.+|.++|||++|||++||+|++|||++|.+++|+.+.++ +++++++++.|+++ ..+++++|+..+..+ T Consensus 37 v~V~~V~~~spA~~aGL~~GDvI~~ing~~V~~~~~l~~~l~--~~~~i~l~v~R~g~-~~~~~v~p~~~~~~g 107 (113) T 2pzd_A 37 VLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNAEDVYEAVR--TQSQLAVQIRRGRE-TLTLYVTPEVTEGGG 107 (113) T ss_dssp EEEEEEBTTSHHHHHTCCTTCEEEEETTEECCSHHHHHHHHH--HCSSEEEEEEETTE-EEEEEECCEEC---C T ss_pred EEEEEECCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHC--CCCEEEEEEEECCE-EEEEEEEEEEECCCC T ss_conf 899998999989985999887999999999689999999866--99879999999999-999999983746982 No 5 >2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein binding; 1.70A {Homo sapiens} Probab=99.16 E-value=2.9e-11 Score=95.94 Aligned_cols=71 Identities=23% Similarity=0.308 Sum_probs=62.1 Q ss_pred CCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCCEEEECCCCCCCCCC Q ss_conf 32000245675565300145662888878304540011111014678863169996587313101121100565 Q gi|254780773|r 119 KPVVSNVSPASPAAIAGVKKGDCIISLDGITVSAFEEVAPYVRENPLHEISLVLYREHVGVLHLKVMPRLQDTV 192 (349) Q Consensus 119 ~p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~~dl~~~i~~~~g~~v~i~v~R~~~~~~~~~v~p~~~~~~ 192 (349) ..+|.+|.|+|||++|||++||+|++|||++|++++|+.+.++. ++++++++.|+++ ..+++++|+..+.. T Consensus 36 Gv~V~~V~~~spA~~aGl~~GDiI~~ing~~v~~~~~l~~~i~~--~~~i~l~V~R~g~-~~~~~v~pe~~~g~ 106 (112) T 2p3w_A 36 GIYVQEVAPNSPSQRGGIQDGDIIVKVNGRPLVDSSELQEAVLT--ESPLLLEVRRGND-DLLFSIAPEVVMGG 106 (112) T ss_dssp SEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSHHHHHHHHHH--CSSEEEEEEETTE-EEEEEECCEEECTT T ss_pred CEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHC--CCCEEEEEEECCE-EEEEEEEEEEECCC T ss_conf 68999978999799869999989999999998899999999977--9979999999999-99999999888599 No 6 >2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein structure initiative; NMR {Geobacillus thermodenitrificans ng80-2} Probab=99.15 E-value=3.4e-11 Score=95.40 Aligned_cols=68 Identities=25% Similarity=0.409 Sum_probs=58.6 Q ss_pred CCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCC-CCCCCCEEEEEECCCCEEEECCCCCCC Q ss_conf 2000245675565300145662888878304540011111014-678863169996587313101121100 Q gi|254780773|r 120 PVVSNVSPASPAAIAGVKKGDCIISLDGITVSAFEEVAPYVRE-NPLHEISLVLYREHVGVLHLKVMPRLQ 189 (349) Q Consensus 120 p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~~dl~~~i~~-~~g~~v~i~v~R~~~~~~~~~v~p~~~ 189 (349) -+|.+|.++|||+ |||++||+|++|||+++.+++|+.++++. .+|+++++++.|+++ ..++++++... T Consensus 7 v~V~~V~~~spA~-agL~~GDvI~~ing~~v~s~~~l~~~i~~~~~g~~v~l~v~R~g~-~~~~~v~l~~~ 75 (94) T 2kl1_A 7 VYVMSVLPNMPAA-GRLEAGDRIAAIDGQPINTSEQIVSYVREKQAGDRVRVTFIRDRK-QHEAELVLKPF 75 (94) T ss_dssp EECCCCCTTSTTB-TTBCTTCEEEEETTBCCCCHHHHHHHHHHSCTTCCEEEEEEETTE-EEEEEECCCBC T ss_pred EEEEEECCCCCHH-HCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEEEEECCE-EEEEEEEEEEC T ss_conf 8999999999068-779998799971998179999999999738999989999999999-99999999980 No 7 >2joa_A Serine protease HTRA1; PDZ, beta-sandwich, cyclically-permuted, protein binding; NMR {Homo sapiens} Probab=99.13 E-value=2.9e-11 Score=95.92 Aligned_cols=67 Identities=25% Similarity=0.468 Sum_probs=59.6 Q ss_pred CCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCCEEEECCCCCCC Q ss_conf 2000245675565300145662888878304540011111014678863169996587313101121100 Q gi|254780773|r 120 PVVSNVSPASPAAIAGVKKGDCIISLDGITVSAFEEVAPYVRENPLHEISLVLYREHVGVLHLKVMPRLQ 189 (349) Q Consensus 120 p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~~dl~~~i~~~~g~~v~i~v~R~~~~~~~~~v~p~~~ 189 (349) .+|.+|.|+|||++|||++||+|++|||++|++++|+.+.++ +++++++++.|+++ ..+++++|+.. T Consensus 37 v~V~~V~~~spA~~aGL~~GDvI~~ing~~V~~~~~~~~~i~--~~~~v~l~v~R~g~-~~~l~v~p~~~ 103 (105) T 2joa_A 37 AYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDVSDVIK--RESTLNMVVRRGNE-DIMITVIPEEI 103 (105) T ss_dssp EEEEEECSSSHHHHHTCCTTCEECBCSSCBCCSHHHHHHHHH--HCSSEEEEEEETTE-EEEEEECCBCC T ss_pred EEEEEECCCCHHHHCCCCCCEEEEEECCEECCCHHHHHHHHH--CCCEEEEEEEECCE-EEEEEEEECCC T ss_conf 899997999969986999981999999999789999999971--89969999999999-99999995567 No 8 >3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A Probab=99.13 E-value=7.7e-11 Score=93.00 Aligned_cols=81 Identities=20% Similarity=0.272 Sum_probs=64.7 Q ss_pred CCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCC-CCCCCCEEEEEECCCCEEEECCCCCCCCCCCCCEEE Q ss_conf 2000245675565300145662888878304540011111014-678863169996587313101121100565431000 Q gi|254780773|r 120 PVVSNVSPASPAAIAGVKKGDCIISLDGITVSAFEEVAPYVRE-NPLHEISLVLYREHVGVLHLKVMPRLQDTVDRFGIK 198 (349) Q Consensus 120 p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~~dl~~~i~~-~~g~~v~i~v~R~~~~~~~~~v~p~~~~~~~~~g~~ 198 (349) -.|.+|.++|||++| |++||+|++|||+++.+|+|+...++. ++|+++++++.|+++ ..++++++...+..+ T Consensus 9 v~V~~V~~~spA~~a-L~~GDvI~~Ing~~i~~~~dl~~~i~~~~~G~~v~l~v~R~g~-~~~~~v~l~~~~~~~----- 81 (100) T 3i18_A 9 VYVMSVKDDVPAADV-LHAGDLITEIDGNAFKSSQEFIDYIHSKKVGDTVKINYKHGDK-NEQADIKLTAIDKKG----- 81 (100) T ss_dssp EEEEEECTTSGGGGT-CCTTCEEEEETTBCCSSHHHHHHHHHTSCTTCEEEEEEEETTE-EEEEEEECEECSTTC----- T ss_pred EEEEEECCCCHHHHH-CCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCEEEEEEEECCE-EEEEEEEEEEECCCC----- T ss_conf 999998999968971-7779999994883379999999998568999899999999999-999999999948899----- Q ss_pred EEEEECCCCCC Q ss_conf 01220344443 Q gi|254780773|r 199 RQVPSVGISFS 209 (349) Q Consensus 199 ~~~~~igi~~~ 209 (349) .+.+|+... T Consensus 82 --~~~iGI~~~ 90 (100) T 3i18_A 82 --TPGIGITLV 90 (100) T ss_dssp --CEECSEEEG T ss_pred --CCEEEEEEE T ss_conf --848989997 No 9 >2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis} Probab=99.12 E-value=3.6e-11 Score=95.28 Aligned_cols=66 Identities=24% Similarity=0.334 Sum_probs=57.9 Q ss_pred CCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCC-CCCCCCEEEEEECCCCEEEECCCCCC Q ss_conf 000245675565300145662888878304540011111014-67886316999658731310112110 Q gi|254780773|r 121 VVSNVSPASPAAIAGVKKGDCIISLDGITVSAFEEVAPYVRE-NPLHEISLVLYREHVGVLHLKVMPRL 188 (349) Q Consensus 121 ~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~~dl~~~i~~-~~g~~v~i~v~R~~~~~~~~~v~p~~ 188 (349) +|.+|.++|||+ |||++||+|+++||+++.+++|+..+++. ++|+++++++.|+++ ..++++++.. T Consensus 4 ~V~~V~~~spA~-agL~~GD~I~~ing~~i~~~~~l~~~l~~~~~G~~v~l~v~R~g~-~~~~~v~l~~ 70 (91) T 2kjp_A 4 YASSVVENMPAK-GKIEVGDKIISADGKNYQSAEKLIDYISSKKAGDKVTLKIEREEK-EKRVTLTLKQ 70 (91) T ss_dssp SCCCCCCSSCCS-SCCCSSCEEEEETTBCCSSHHHHHHHHSSCCSSCEECEEEESSSC-EECCCEECCC T ss_pred EEEEECCCCCHH-HCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCEEEEEEEECCE-EEEEEEEEEE T ss_conf 999889999357-689999899993886489999999999748989999999999999-9999999998 No 10 >1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, IAP-binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1 Probab=99.11 E-value=7.3e-11 Score=93.15 Aligned_cols=66 Identities=27% Similarity=0.413 Sum_probs=58.7 Q ss_pred CCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCCEEEECCCCCCC Q ss_conf 000245675565300145662888878304540011111014678863169996587313101121100 Q gi|254780773|r 121 VVSNVSPASPAAIAGVKKGDCIISLDGITVSAFEEVAPYVRENPLHEISLVLYREHVGVLHLKVMPRLQ 189 (349) Q Consensus 121 ~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~~dl~~~i~~~~g~~v~i~v~R~~~~~~~~~v~p~~~ 189 (349) .|.+|.++|||++|||++||+|+++||++|.+..|+.+.+ ++++++++++.|+++ ..+++++++.. T Consensus 259 ~V~~V~~~spA~~AGL~~GDiI~~inG~~I~~~~~l~~~~--~~g~~v~l~V~R~g~-~~~l~Vtl~~~ 324 (325) T 1lcy_A 259 LIHKVILGSPAHRAGLRPGDVILAIGEQMVQNAEDVYEAV--RTQSQLAVQIRRGRE-TLTLYVTPEVT 324 (325) T ss_dssp EEEEECTTSHHHHHTCCTTCEEEEETTEECCSHHHHHHHH--TTCSSEEEEEEETTE-EEEEEECCEEC T ss_pred EEEEECCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHH--CCCCEEEEEEEECCE-EEEEEEEECCC T ss_conf 9999379996898699989999998999938999999975--589879999999999-99999972155 No 11 >2ytw_A Serine protease HTRA1; protein regulation, IGF-binding protein cleavage, peptidase, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=99.08 E-value=8.6e-11 Score=92.68 Aligned_cols=67 Identities=25% Similarity=0.468 Sum_probs=59.8 Q ss_pred CCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCCEEEECCCCCCC Q ss_conf 2000245675565300145662888878304540011111014678863169996587313101121100 Q gi|254780773|r 120 PVVSNVSPASPAAIAGVKKGDCIISLDGITVSAFEEVAPYVRENPLHEISLVLYREHVGVLHLKVMPRLQ 189 (349) Q Consensus 120 p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~~dl~~~i~~~~g~~v~i~v~R~~~~~~~~~v~p~~~ 189 (349) -+|.+|.++|||++|||++||+|++|||++|.+++|+.+.++ +++++.+++.|++. ..+++++|+.. T Consensus 50 v~V~~V~~~spA~~aGL~~GDvI~~ing~~V~~~~~~~~~l~--~g~~i~l~v~R~g~-~~~~~v~p~~~ 116 (118) T 2ytw_A 50 AYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDVSDVIK--RESTLNMVVRRGNE-DIMITVIPEEI 116 (118) T ss_dssp EEEEECCSSSTTTTTTCCSSCEEEEETTEECCSHHHHHHHHH--HSSSEEEEEEETTE-EEEEEECCEEE T ss_pred EEEEEECCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHC--CCCEEEEEEEECCE-EEEEEEEECCC T ss_conf 999997799958986888885889999999489999999864--89979999999999-99999996566 No 12 >2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6 Probab=99.06 E-value=1e-10 Score=92.11 Aligned_cols=66 Identities=20% Similarity=0.264 Sum_probs=57.1 Q ss_pred CCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCC-CCCCCCEEEEEECCCCEEEECCCCC Q ss_conf 2000245675565300145662888878304540011111014-6788631699965873131011211 Q gi|254780773|r 120 PVVSNVSPASPAAIAGVKKGDCIISLDGITVSAFEEVAPYVRE-NPLHEISLVLYREHVGVLHLKVMPR 187 (349) Q Consensus 120 p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~~dl~~~i~~-~~g~~v~i~v~R~~~~~~~~~v~p~ 187 (349) ..|.+|.++|||+.| |++||+|++|||++|.+|+|+.++++. +||+++++++.|++. ..++..+|+ T Consensus 27 v~V~~V~~~spA~~~-L~~GD~Ii~InG~~V~~~~dl~~~i~~~~pG~~V~l~v~R~~~-~v~l~~~p~ 93 (125) T 2hga_A 27 VQIDSVVPGSPASKV-LTPGLVIESINGMPTSNLTTYSAALKTISVGEVINITTDQGTF-HLKTGRNPN 93 (125) T ss_dssp EEEEEECSSSGGGGT-SCTTCEEEEETTEECSSHHHHHHHHTTCCTTCEEEEEETTEEE-EEECCBCSS T ss_pred EEEEEECCCCHHHHH-CCCCCEEEEECCEECCCHHHHHHHHHCCCCCCEEEEEEEECCE-EEEEEECCC T ss_conf 899998999958974-6899999986998758999999999728998989999999999-999985568 No 13 >1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis H37RV} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A Probab=99.05 E-value=1.3e-10 Score=91.48 Aligned_cols=66 Identities=23% Similarity=0.303 Sum_probs=57.0 Q ss_pred CCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCC-CCCCCCEEEEEECCCCEEEECCCC Q ss_conf 000245675565300145662888878304540011111014-678863169996587313101121 Q gi|254780773|r 121 VVSNVSPASPAAIAGVKKGDCIISLDGITVSAFEEVAPYVRE-NPLHEISLVLYREHVGVLHLKVMP 186 (349) Q Consensus 121 ~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~~dl~~~i~~-~~g~~v~i~v~R~~~~~~~~~v~p 186 (349) +|.+|.++|||++|||++||+|+++||++|++++|+.+.++. ++|+++++++.|++.+..+++++- T Consensus 245 ~V~~V~~~spa~~aGl~~GDiI~~i~g~~i~~~~~l~~~l~~~~~G~~v~l~v~R~~g~~~~~~v~l 311 (324) T 1y8t_A 245 KIVEVVAGGAAANAGVPKGVVVTKVDDRPINSADALVAAVRSKAPGATVALTFQDPSGGSRTVQVTL 311 (324) T ss_dssp EEEEECTTSTTTTTTCCTTCEEEEETTEECCSHHHHHHHHHTSCTTCEEEEEEECSSCCEEEEEEEC T ss_pred EEEEECCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHHCCCCCEEEEEEEECCCCEEEEEEEE T ss_conf 2456436970788799999999998998968999999999717988889999998999899999998 No 14 >1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha- beta protein, hydrolase; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A Probab=98.92 E-value=7.3e-10 Score=86.27 Aligned_cols=64 Identities=39% Similarity=0.483 Sum_probs=56.7 Q ss_pred CCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCC-CCCCCCEEEEEECCCCEEEECCC Q ss_conf 000245675565300145662888878304540011111014-67886316999658731310112 Q gi|254780773|r 121 VVSNVSPASPAAIAGVKKGDCIISLDGITVSAFEEVAPYVRE-NPLHEISLVLYREHVGVLHLKVM 185 (349) Q Consensus 121 ~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~~dl~~~i~~-~~g~~v~i~v~R~~~~~~~~~v~ 185 (349) .|.+|.++|||++||||+||+|+++||++|.+..|+.+.+.. ++|+++++++.|+++ ..+++++ T Consensus 247 ~V~~V~~~spA~~aGLk~GDiI~svnG~~I~~~~~l~~~l~~~~~G~~v~l~v~R~g~-~~~~~V~ 311 (318) T 1te0_A 247 VVNEVSPDGPAANAGIQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVVVMRDDK-QLTLQVT 311 (318) T ss_dssp EEEEECTTSTTTTTCCCTTCCEEEETTEECCCHHHHHHHHHTSCTTCEEEEEEESSSC-EEEEEEE T ss_pred EEEEECCCCCHHHCCCCCCCEEEEECCEECCCHHHHHHHHHHCCCCCEEEEEEEECCE-EEEEEEE T ss_conf 5665257992787899989999998999978999999999717998989999999999-9999999 No 15 >2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5 Probab=98.88 E-value=1.4e-09 Score=84.32 Aligned_cols=63 Identities=19% Similarity=0.285 Sum_probs=56.3 Q ss_pred CCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCC-CCCCCCEEEEEECCCCEEEECC Q ss_conf 000245675565300145662888878304540011111014-6788631699965873131011 Q gi|254780773|r 121 VVSNVSPASPAAIAGVKKGDCIISLDGITVSAFEEVAPYVRE-NPLHEISLVLYREHVGVLHLKV 184 (349) Q Consensus 121 ~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~~dl~~~i~~-~~g~~v~i~v~R~~~~~~~~~v 184 (349) .|..+.|+|||++|||++||+|++|||+++.+++|+...++. ++++++++++.|+|+ ..++++ T Consensus 40 ~V~~v~~~s~a~~aGl~~GDvI~~ing~~v~~~~~~~~~i~~~~~g~~v~l~v~R~g~-~~~i~v 103 (105) T 2i4s_A 40 RVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVERDGQ-QHDVYI 103 (105) T ss_dssp EEEECSCTHHHHHHTCCTTCEEEEETTEETTSTTHHHHHHHHHTTCSEEEEEEEETTE-EEEEEE T ss_pred EEECCCCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHHCCCCCEEEEEEEECCE-EEEEEE T ss_conf 9942899798998799989999998999948999999999837998989999999999-999999 No 16 >1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A Probab=98.88 E-value=1e-09 Score=85.32 Aligned_cols=65 Identities=34% Similarity=0.448 Sum_probs=57.4 Q ss_pred CCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCC-CCCCCCEEEEEECCCCEEEECCCC Q ss_conf 000245675565300145662888878304540011111014-678863169996587313101121 Q gi|254780773|r 121 VVSNVSPASPAAIAGVKKGDCIISLDGITVSAFEEVAPYVRE-NPLHEISLVLYREHVGVLHLKVMP 186 (349) Q Consensus 121 ~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~~dl~~~i~~-~~g~~v~i~v~R~~~~~~~~~v~p 186 (349) .|.+|.++|||++|||++||+|++|||++|.+|.|+...+.. .+++++++++.|+++ ..+++++. T Consensus 289 ~V~~V~~~spA~~aGL~~GDvIl~InG~~V~~~~dl~~~l~~~~~g~~v~l~v~R~g~-~~~~~V~l 354 (448) T 1ky9_A 289 FVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGK-QVNVNLEL 354 (448) T ss_dssp ECCCCTTCSSSTTTTCCTTCEECBSSSSBCCSSHHHHHHTTSSBTTCCCEEEEESSSC-EEECCCC- T ss_pred EEEEECCCCCHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCE-EEEEEEEE T ss_conf 5889888887343378888789964880548999986667643655543069994990-99999996 No 17 >2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5 Probab=98.83 E-value=2.2e-09 Score=82.96 Aligned_cols=63 Identities=19% Similarity=0.288 Sum_probs=56.2 Q ss_pred CCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCC-CCCCCCEEEEEECCCCEEEECC Q ss_conf 000245675565300145662888878304540011111014-6788631699965873131011 Q gi|254780773|r 121 VVSNVSPASPAAIAGVKKGDCIISLDGITVSAFEEVAPYVRE-NPLHEISLVLYREHVGVLHLKV 184 (349) Q Consensus 121 ~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~~dl~~~i~~-~~g~~v~i~v~R~~~~~~~~~v 184 (349) .|..+.++|||++|||++||+|+++||++|.+++|+...++. .+++++++++.|+|+. .++.+ T Consensus 22 ~v~~v~~~s~~~~aGl~~gDvI~~ing~~i~~~~~~~~~i~~~~~~~~v~l~v~R~g~~-~~i~v 85 (87) T 2i6v_A 22 RVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVERDGQQ-HDVYI 85 (87) T ss_dssp EEEECSCHHHHHHTTCCTTCEEEEETTEETTCHHHHHHHHHTGGGCSEEEEEEEETTEE-EEEEE T ss_pred EEECCCCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHHCCCCCEEEEEEEECCEE-EEEEE T ss_conf 99616899989987999899999999999889899999998379998799999999999-99999 No 18 >2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 3gj9_A 2kg2_A 3dj3_A Probab=98.81 E-value=2.3e-09 Score=82.81 Aligned_cols=98 Identities=16% Similarity=0.240 Sum_probs=68.5 Q ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC--------CCCCCC-CCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCC Q ss_conf 5036842101342112333211221110111--------001233-3320002456755653001456628888783045 Q gi|254780773|r 81 FFCAAPWKKILTVLAGPLANCVMAILFFTFF--------FYNTGV-MKPVVSNVSPASPAAIAGVKKGDCIISLDGITVS 151 (349) Q Consensus 81 f~~~~~~~R~~i~~AGp~~N~ilA~iif~~~--------~~~~g~-~~p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~ 151 (349) .+-.+.++|..+.-..+-.|--|+|-+--.. +..... ..-+|.+|.|+|||++|||++||+|++|||+++. T Consensus 18 ~~~~~~~~~v~~~~~~~~~~~~lGfsI~gg~~~~~~~~~~~~~~~~~gi~V~~V~~gspA~~~gL~~GD~Il~VNg~~v~ 97 (139) T 2vz5_A 18 LYFQSMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMT 97 (139) T ss_dssp ----CEEEEEEEECEEETTEEECSEEEEECTTSCGGGCSSCSSTTCCCEEEEEECTTSHHHHHTCCTTCEEEEETTEECT T ss_pred CCCCCCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEECCEECC T ss_conf 22268864899998145897841579953206776434445677998899999807995220679999999998998988 Q ss_pred CC--HHHHHHCCCCCCCCCEEEEEECCCC Q ss_conf 40--0111110146788631699965873 Q gi|254780773|r 152 AF--EEVAPYVRENPLHEISLVLYREHVG 178 (349) Q Consensus 152 s~--~dl~~~i~~~~g~~v~i~v~R~~~~ 178 (349) ++ ++..+.++..++..+.+++.|++.. T Consensus 98 ~~t~~e~v~~l~~~~~~~v~l~v~R~~~~ 126 (139) T 2vz5_A 98 MVTHDQARKRLTKRSEEVVRLLVTRQSLQ 126 (139) T ss_dssp TCCHHHHHHHHCCTTCSEEEEEEEECC-- T ss_pred CCCHHHHHHHHHHCCCCEEEEEEEECCCC T ss_conf 99999999999748999899999989976 No 19 >2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens} Probab=98.75 E-value=7.1e-09 Score=79.43 Aligned_cols=63 Identities=22% Similarity=0.283 Sum_probs=55.2 Q ss_pred CCCCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCCC Q ss_conf 33332000245675565300145662888878304540--0111110146788631699965873 Q gi|254780773|r 116 GVMKPVVSNVSPASPAAIAGVKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHVG 178 (349) Q Consensus 116 g~~~p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~~ 178 (349) +....+|.+|.|+|||++|||++||+|++|||+++.++ +++.+.++..++.+++++|.|..++ T Consensus 42 g~~~v~V~~V~~gs~A~~aGL~~GD~Il~INg~~v~~~t~~evv~~lr~~~~~~v~L~Vv~~~d~ 106 (109) T 2vsv_A 42 GNAPVQVHFLDPYCSASVAGAREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKVVSLLDE 106 (109) T ss_dssp SSSSCEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTSCEEEEEESCC-- T ss_pred CCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCEEEEEEECCCCC T ss_conf 99997999968999478477899999999999998999899999998778997489999787755 No 20 >2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=98.72 E-value=3.4e-09 Score=81.65 Aligned_cols=59 Identities=25% Similarity=0.365 Sum_probs=51.0 Q ss_pred CCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCCC Q ss_conf 32000245675565300145662888878304540--0111110146788631699965873 Q gi|254780773|r 119 KPVVSNVSPASPAAIAGVKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHVG 178 (349) Q Consensus 119 ~p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~~ 178 (349) ..+|.+|.++|||++|||++||+|++|||+++.++ +|+.+.++. ++++++++|.|.+.. T Consensus 62 gi~V~~V~~gspA~~aGL~~GD~Il~Ing~~v~~~~~~e~v~~i~~-~g~~v~L~V~r~~~~ 122 (126) T 2yuy_A 62 TIFVKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQN-SDTTLELSVMPKDSG 122 (126) T ss_dssp CCCBCCCCSSSHHHHHTCCSSCCCCEETTEECSSCCHHHHHHHHHT-CTTEEEEECCCCCCC T ss_pred CEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHC-CCCEEEEEEEECCCC T ss_conf 8899997999979986998899999999999889999999999877-999799999969989 No 21 >1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A Probab=98.60 E-value=3.9e-09 Score=81.25 Aligned_cols=57 Identities=32% Similarity=0.436 Sum_probs=51.9 Q ss_pred CCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCC Q ss_conf 0002456755653001456628888783045400111110146788631699965873 Q gi|254780773|r 121 VVSNVSPASPAAIAGVKKGDCIISLDGITVSAFEEVAPYVRENPLHEISLVLYREHVG 178 (349) Q Consensus 121 ~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~~dl~~~i~~~~g~~v~i~v~R~~~~ 178 (349) +|.+|.++|||++|||++||+|++|||++|++++|+.+.+++. ++.+.+++.|+++. T Consensus 386 vV~~V~~~S~A~~aGL~~GDvI~~Ing~~I~s~~d~~~~l~~~-~~~i~l~V~R~g~~ 442 (448) T 1ky9_A 386 VVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVLDSK-PSVLALNIQRGDST 442 (448) T ss_dssp ---------------------------------------------------------- T ss_pred EEEEECCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHCC-CCEEEEEEEECCEE T ss_conf 9999579998998699989999988999869999999999618-98589999989989 No 22 >1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Probab=98.58 E-value=7.3e-08 Score=72.44 Aligned_cols=60 Identities=30% Similarity=0.485 Sum_probs=54.2 Q ss_pred CCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCCE Q ss_conf 2000245675565300-14566288887830454001111101467886316999658731 Q gi|254780773|r 120 PVVSNVSPASPAAIAG-VKKGDCIISLDGITVSAFEEVAPYVRENPLHEISLVLYREHVGV 179 (349) Q Consensus 120 p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s~~dl~~~i~~~~g~~v~i~v~R~~~~~ 179 (349) -+|..|.|+|||+++| |++||+|++|||+++.++++....+...++..+.+.+.|..... T Consensus 50 i~V~~V~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~~~~l~~~~~~~v~l~v~r~~~~~ 110 (124) T 1wh1_A 50 IYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNREEAVALLTSEENKNFSLLIARPELQL 110 (124) T ss_dssp EEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCSHHHHHHHHTCSSCCSCCEEEEECSSCC T ss_pred EEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCHHHHHHHHHCCCCCEEEEEEEECCCCC T ss_conf 9999969999699759978899999999998889999999986089985999999289713 No 23 >1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Probab=98.56 E-value=3.9e-08 Score=74.33 Aligned_cols=86 Identities=21% Similarity=0.338 Sum_probs=60.1 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCCC--HHHHHHCCCC- Q ss_conf 013421123332112211101110-01233332000245675565300-145662888878304540--0111110146- Q gi|254780773|r 89 KILTVLAGPLANCVMAILFFTFFF-YNTGVMKPVVSNVSPASPAAIAG-VKKGDCIISLDGITVSAF--EEVAPYVREN- 163 (349) Q Consensus 89 R~~i~~AGp~~N~ilA~iif~~~~-~~~g~~~p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s~--~dl~~~i~~~- 163 (349) +-.++.++|..+|-+.+.- ..+ .......++|++|.|+|||++|| |++||+|++|||+++.++ ++..+.++.. T Consensus 8 ~~v~l~~~~~~glG~~i~g--g~~~~~~~~~~~~V~~V~p~spA~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~~~ 85 (196) T 1p1d_A 8 TEVVLTADPVTGFGIQLQG--SVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSS 85 (196) T ss_dssp EEEEEECBTTTBCCCEEEE--CSSCSSSCSCSEEEEECCTTSHHHHTSCCCSSCCEEEETTBCSTTSCHHHHHHHHHTCC T ss_pred EEEEEECCCCCCCCEEEEE--CCCCCCCCCCCCEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHCC T ss_conf 9999966999963889971--35677768889799998999978970899789999998998869988999999997459 Q ss_pred CCCCCEEEEEECC Q ss_conf 7886316999658 Q gi|254780773|r 164 PLHEISLVLYREH 176 (349) Q Consensus 164 ~g~~v~i~v~R~~ 176 (349) ....+.+++.++. T Consensus 86 ~~~~v~l~~~~~~ 98 (196) T 1p1d_A 86 ITSKVTLEIEFDV 98 (196) T ss_dssp SSSEEEEEEEECS T ss_pred CCEEEEEEEECCC T ss_conf 8549998751010 No 24 >1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1 Probab=98.55 E-value=4e-08 Score=74.24 Aligned_cols=61 Identities=25% Similarity=0.368 Sum_probs=52.9 Q ss_pred CCCCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECC Q ss_conf 33332000245675565300145662888878304540--01111101467886316999658 Q gi|254780773|r 116 GVMKPVVSNVSPASPAAIAGVKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREH 176 (349) Q Consensus 116 g~~~p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~ 176 (349) +....+|..|.++|||++|||++||+|++|||+++..+ +|+.+.++..+++.+++++.|.. T Consensus 34 g~~~v~V~~v~~gs~A~~aGL~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~~v~l~v~~~~ 96 (111) T 1vae_A 34 GNTPVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVSLL 96 (111) T ss_dssp SSSSCEECCCCTTSSHHHHHCCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEECEEEECEE T ss_pred CCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCEEEEEEECCC T ss_conf 999989999799997898499889999999999989998999999987689986899997877 No 25 >1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Probab=98.54 E-value=6.7e-08 Score=72.71 Aligned_cols=60 Identities=17% Similarity=0.349 Sum_probs=52.4 Q ss_pred CCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCCC Q ss_conf 32000245675565300145662888878304540--0111110146788631699965873 Q gi|254780773|r 119 KPVVSNVSPASPAAIAGVKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHVG 178 (349) Q Consensus 119 ~p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~~ 178 (349) ..+|.+|.|+|||++|||++||+|++|||+++.++ +++.+.++..++..+.+.+.|.... T Consensus 28 gi~V~~V~~~spA~~aGL~~GD~Il~INg~~v~~~~~~~v~~~l~~~~~~~v~~~~~~~~~~ 89 (166) T 1w9e_A 28 GIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRDRPFE 89 (166) T ss_dssp EEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEECCTTC T ss_pred CEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCEEEEEEEECCCC T ss_conf 89999989999899839988999999899886899899999987439996899999608964 No 26 >2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens} Probab=98.52 E-value=6.7e-08 Score=72.72 Aligned_cols=58 Identities=31% Similarity=0.399 Sum_probs=50.6 Q ss_pred CCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 32000245675565300145662888878304540--011111014678863169996587 Q gi|254780773|r 119 KPVVSNVSPASPAAIAGVKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 119 ~p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) ..+|..|.++|||+++||++||+|++|||+++.++ +|..+.++. +++++++++.|++. T Consensus 28 ~i~V~~v~~~s~A~~~gL~~GD~Il~VNg~~v~~~~~~e~~~ll~~-~~~~v~L~V~R~~~ 87 (89) T 2q3g_A 28 PLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEAQNKIRA-CGERLSLGLSRAIT 87 (89) T ss_dssp EEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHHT-CTTEEEEEEEEECC T ss_pred CCEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHC-CCCEEEEEEEECCC T ss_conf 8299997699978985999999999999999999989999999876-99989999997985 No 27 >2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consortium, SGC, unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A* Probab=98.51 E-value=7.6e-08 Score=72.36 Aligned_cols=58 Identities=28% Similarity=0.408 Sum_probs=49.6 Q ss_pred CCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCH--HHHHHCCCCCCCCCEEEEEECCCC Q ss_conf 20002456755653001456628888783045400--111110146788631699965873 Q gi|254780773|r 120 PVVSNVSPASPAAIAGVKKGDCIISLDGITVSAFE--EVAPYVRENPLHEISLVLYREHVG 178 (349) Q Consensus 120 p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~~--dl~~~i~~~~g~~v~i~v~R~~~~ 178 (349) .+|..|.|+|||+++||++||+|++|||+++.++. ++.+.++.. ++++++++.|++.+ T Consensus 29 v~V~~v~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~e~~~~l~~~-~~~v~L~V~R~~~~ 88 (91) T 2pkt_A 29 LAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEAQNRIKGC-TDNLTLTVARSEHE 88 (91) T ss_dssp EEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTC-SSEEEEEEEEECCC T ss_pred EEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEEECCCC T ss_conf 8999999999899879999999998999999999899999998779-98299999989925 No 28 >2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens} Probab=98.51 E-value=8.8e-08 Score=71.89 Aligned_cols=59 Identities=29% Similarity=0.500 Sum_probs=50.8 Q ss_pred CCCCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCC--CHHHHHHCCCCC-CCCCEEEEEECC Q ss_conf 332000245675565300-14566288887830454--001111101467-886316999658 Q gi|254780773|r 118 MKPVVSNVSPASPAAIAG-VKKGDCIISLDGITVSA--FEEVAPYVRENP-LHEISLVLYREH 176 (349) Q Consensus 118 ~~p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s--~~dl~~~i~~~~-g~~v~i~v~R~~ 176 (349) ...+|.+|.|+|||+++| |++||+|++|||+++.+ .+|+.+++++.+ +.++++++.|+. T Consensus 58 ~~i~V~~V~pgg~A~~~G~L~~GD~Il~VNG~~v~~~t~~ea~~lL~~~~~~~~v~L~V~R~~ 120 (121) T 2kom_A 58 APIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFRQE 120 (121) T ss_dssp CCEEEEEECTTSHHHHHTCCCSSSEEEEETTEECTTSCHHHHHHHHHHCCSSCEEEEEEEECC T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEEEEECCC T ss_conf 588999989999799719499899999999999789989999999971899898999997799 No 29 >2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.70A {Homo sapiens} Probab=98.51 E-value=1.1e-07 Score=71.15 Aligned_cols=57 Identities=23% Similarity=0.354 Sum_probs=49.9 Q ss_pred CCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECC Q ss_conf 32000245675565300145662888878304540--01111101467886316999658 Q gi|254780773|r 119 KPVVSNVSPASPAAIAGVKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREH 176 (349) Q Consensus 119 ~p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~ 176 (349) ..+|..|.|+|||+++||++||+|++|||+++.++ +|..+.++.. ++++++++.|+. T Consensus 27 ~v~V~~v~~gs~A~~~~L~~GD~Il~VNg~~v~~~~~~ev~~~l~~~-~~~v~L~v~R~~ 85 (87) T 2pa1_A 27 PIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQS-PSPLRLQLDRIT 85 (87) T ss_dssp EEEEEEECSSSHHHHTTCCTTCEEEEETTEESTTCCHHHHHHHHHTC-CSSEEEEEEECC T ss_pred CEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEEECC T ss_conf 97999988989799889999999999999999999899999998769-998999999369 No 30 >1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A Probab=98.50 E-value=8.2e-08 Score=72.10 Aligned_cols=56 Identities=23% Similarity=0.445 Sum_probs=49.0 Q ss_pred CCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCC--CHHHHHHCCCCCCCCCEEEEEECC Q ss_conf 200024567556530014566288887830454--001111101467886316999658 Q gi|254780773|r 120 PVVSNVSPASPAAIAGVKKGDCIISLDGITVSA--FEEVAPYVRENPLHEISLVLYREH 176 (349) Q Consensus 120 p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s--~~dl~~~i~~~~g~~v~i~v~R~~ 176 (349) .+|..|.++|||+++||++||+|++|||+++.+ .+|..+.++.+ ++++++++.|++ T Consensus 27 i~V~~v~~gs~A~~~gL~~GD~Il~INg~~v~~~s~~ev~~~i~~~-~~~v~L~v~R~~ 84 (85) T 1rgw_A 27 LTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSA-SYNLSLTLQKSK 84 (85) T ss_dssp CBEEEECTTSHHHHSSCCCCSBEEEETTEECTTCCHHHHHHHHTTC-SSCEEEEEESCC T ss_pred EEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEEECC T ss_conf 8999946999478688999999998999999999799999999759-997999999797 No 31 >2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens} Probab=98.50 E-value=3.7e-08 Score=74.48 Aligned_cols=60 Identities=18% Similarity=0.190 Sum_probs=51.5 Q ss_pred CCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCC--CCHHHHHHCCC-CCCCCCEEEEEECCC Q ss_conf 3320002456755653001456628888783045--40011111014-678863169996587 Q gi|254780773|r 118 MKPVVSNVSPASPAAIAGVKKGDCIISLDGITVS--AFEEVAPYVRE-NPLHEISLVLYREHV 177 (349) Q Consensus 118 ~~p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~--s~~dl~~~i~~-~~g~~v~i~v~R~~~ 177 (349) ...+|.+|.++|||+.|||++||+|++|||+++. +++++.+.++. ..+.++.+++.|+|+ T Consensus 28 ~g~~V~~v~~gspA~~~gL~~GD~Il~INg~~v~~~~~~e~~~~l~~~~~~~~l~l~v~R~Gk 90 (90) T 2eaq_A 28 PGIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHLVMDVRRYGK 90 (90) T ss_dssp TEEEEEEECTTSHHHHTTCCTTCEEEEETTEECCTTCHHHHHHHHHHHHHHTEEEEEEEEEC- T ss_pred CCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEEEEEECCC T ss_conf 999999978999799869999999999999998889999999999738999999999996979 No 32 >2v90_A PDZ domain-containing protein 3; alternative splicing, membrane, cytoplasm, protein-binding; 2.00A {Homo sapiens} Probab=98.50 E-value=7.2e-08 Score=72.49 Aligned_cols=61 Identities=23% Similarity=0.349 Sum_probs=50.5 Q ss_pred CCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCCCE Q ss_conf 332000245675565300145662888878304540--01111101467886316999658731 Q gi|254780773|r 118 MKPVVSNVSPASPAAIAGVKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHVGV 179 (349) Q Consensus 118 ~~p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~~~ 179 (349) ....|..|.++|||++|||++||+|++|||+++.+. ++..+.++. +++.+++++.|++.+. T Consensus 30 ~~~~V~~V~~gspA~~aGL~~GD~Il~Ing~~v~~~s~~~v~~~l~~-~~~~v~L~v~r~~~~~ 92 (96) T 2v90_A 30 PGQFLWEVDPGLPAKKAGMQAGDRLVAVAGESVEGLGHEETVSRIQG-QGSCVSLTVVDPEADR 92 (96) T ss_dssp EEEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHT-TTTEEEEEEECCCTTS T ss_pred CCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHC-CCCEEEEEEECCCCCE T ss_conf 89999997999989986999899999999999899999999999877-9897999998799772 No 33 >2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Probab=98.49 E-value=7.6e-08 Score=72.34 Aligned_cols=59 Identities=27% Similarity=0.382 Sum_probs=49.8 Q ss_pred CCCCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 332000245675565300-145662888878304540--011111014678863169996587 Q gi|254780773|r 118 MKPVVSNVSPASPAAIAG-VKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 118 ~~p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) ..++|.+|.|+|||++|| |++||+|++|||+++.++ ++....++. +++++++++.|+.. T Consensus 33 ~~~~V~~V~~~spA~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~-~~~~v~l~v~~~~~ 94 (200) T 2qt5_A 33 GKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKN-VGERVVLEVEYELP 94 (200) T ss_dssp SCSEEEEECTTSHHHHTTSCCTTCEEEEETTEECTTSCHHHHHHHHHT-CCSEEEEEEEEECC T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCCEECCCCHHHHHHHHHC-CCCCEEEEEECCCC T ss_conf 897999989999789739987897987618966458968999999861-69818987640355 No 34 >3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A Probab=98.49 E-value=9.2e-08 Score=71.77 Aligned_cols=57 Identities=30% Similarity=0.347 Sum_probs=47.7 Q ss_pred CCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCH--HHHHHCCCCCCCCCEEEEEECCC Q ss_conf 20002456755653001456628888783045400--11111014678863169996587 Q gi|254780773|r 120 PVVSNVSPASPAAIAGVKKGDCIISLDGITVSAFE--EVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 120 p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~~--dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) .+|..|.++|||++|||++||+|++|||+++.++. +..+.+++ +++++++++.+... T Consensus 36 ~~V~~V~~gs~A~~aGl~~GD~Il~VNg~~v~~~~~~~~~~~l~~-~g~~v~L~v~~~~~ 94 (99) T 3khf_A 36 HVVWSVEDGSPAQEAGLRAGDLITHINGESVLGLVHMDVVELLLK-SGNKISLRTTALEN 94 (99) T ss_dssp EEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHH-SCSEEEEEEECSCS T ss_pred EEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHC-CCCEEEEEEECCCC T ss_conf 099898998946845537999999999989899999999999876-98979999993998 No 35 >2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1 Probab=98.48 E-value=1.2e-07 Score=70.93 Aligned_cols=61 Identities=26% Similarity=0.312 Sum_probs=52.1 Q ss_pred CCCCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 33332000245675565300145662888878304540--011111014678863169996587 Q gi|254780773|r 116 GVMKPVVSNVSPASPAAIAGVKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 116 g~~~p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) +....+|.+|.++|||+.|||++||+|++|||+++.++ +++.+.+++. ++++++++.|+.. T Consensus 22 ~~~~~~V~~V~~~s~A~~~GL~~GD~Il~INg~~v~~~~~~~v~~~i~~~-~~~v~l~v~r~~~ 84 (91) T 2f5y_A 22 CDSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSC-PSEIILLVWRMVP 84 (91) T ss_dssp CSSSCEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTC-SSEEEEEEEECC- T ss_pred CCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEEECCC T ss_conf 89997999989999799869977999999999997999999999998779-9979999998999 No 36 >2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Probab=98.48 E-value=1.1e-07 Score=71.12 Aligned_cols=57 Identities=28% Similarity=0.482 Sum_probs=49.7 Q ss_pred CCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 2000245675565300-145662888878304540--011111014678863169996587 Q gi|254780773|r 120 PVVSNVSPASPAAIAG-VKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 120 p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) .+|.+|.|+|||+++| |++||+|++|||+++.++ +|+.+.+++.+ +++++++.|+.. T Consensus 137 v~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~lk~~~-~~v~L~V~Rd~~ 196 (200) T 2qt5_A 137 VVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCG-QEATLLIEYDVS 196 (200) T ss_dssp EEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTC-SEEEEEEEEEEE T ss_pred EEEEECCCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHCC-CEEEEEEEECCC T ss_conf 899966699856733899999899989998989998999999998389-978999997997 No 37 >1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1 Probab=98.46 E-value=1.7e-07 Score=69.87 Aligned_cols=61 Identities=26% Similarity=0.331 Sum_probs=51.4 Q ss_pred CCCCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCH--HHHHHCCCCCCCCCEEEEEECCC Q ss_conf 333320002456755653001456628888783045400--11111014678863169996587 Q gi|254780773|r 116 GVMKPVVSNVSPASPAAIAGVKKGDCIISLDGITVSAFE--EVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 116 g~~~p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~~--dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) +....+|..|.++|||++|||++||+|++|||+++.++. ++.+.++.. +.++.+++.|... T Consensus 34 ~~~~~~V~~V~~~s~A~~aGL~~GD~Il~INg~~v~~~~~~ev~~~l~~~-~~~v~l~v~R~~~ 96 (100) T 1whd_A 34 CDSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSC-PSEIILLVWRVSG 96 (100) T ss_dssp CSSSCBCCBCCTTSHHHHHTCCSSCEEEEETTEECTTCCHHHHHHHHHHC-SSEEEEEEEECCS T ss_pred CCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEEECCC T ss_conf 89998999978999278679999999999999999999999999997679-9979999998998 No 38 >2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens} Probab=98.45 E-value=1.1e-07 Score=71.19 Aligned_cols=56 Identities=29% Similarity=0.496 Sum_probs=48.0 Q ss_pred CCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCHH--HHHHCCCCCCCCCEEEEEECCC Q ss_conf 00024567556530014566288887830454001--1111014678863169996587 Q gi|254780773|r 121 VVSNVSPASPAAIAGVKKGDCIISLDGITVSAFEE--VAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 121 ~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~~d--l~~~i~~~~g~~v~i~v~R~~~ 177 (349) .|.+|.|+|||+++||++||+|++|||.++.+.+. ....++. +++++++++.|+++ T Consensus 37 ~I~~v~~gs~A~~~gL~~GD~Il~Vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~~~ 94 (97) T 2w4f_A 37 FISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRG-AGTAVQMRVWRERE 94 (97) T ss_dssp EEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHT-SCSEEEEEEECCSS T ss_pred EEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHC-CCCEEEEEEEECCC T ss_conf 99998999978985999999999999999999999999999768-98989999998990 No 39 >3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 2ka9_A Probab=98.45 E-value=1.1e-07 Score=71.33 Aligned_cols=57 Identities=16% Similarity=0.307 Sum_probs=44.6 Q ss_pred CCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCCCHH--HHHHCCCCCCCCCEEEEEECCCC Q ss_conf 000245675565300-14566288887830454001--11110146788631699965873 Q gi|254780773|r 121 VVSNVSPASPAAIAG-VKKGDCIISLDGITVSAFEE--VAPYVRENPLHEISLVLYREHVG 178 (349) Q Consensus 121 ~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s~~d--l~~~i~~~~g~~v~i~v~R~~~~ 178 (349) +|.+|.|+|||++|| |++||+|++|||+++.++.+ ....++ +.++.+.+++.|.... T Consensus 38 ~V~~V~p~s~A~~aG~l~~GD~Il~VNG~~v~~~~~~~~~~~l~-~~~~~v~l~~~~~~~~ 97 (196) T 3gsl_A 38 FITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALK-EAGSIVRLYVMRRKPP 97 (196) T ss_dssp EEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHH-TSCSEEEEEEEEECCC T ss_pred EEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH-CCCCEEEEEEEECCCC T ss_conf 99998999817862999889999988995569989999999997-1798489998623698 No 40 >3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} Probab=98.45 E-value=7.3e-08 Score=72.45 Aligned_cols=59 Identities=22% Similarity=0.389 Sum_probs=50.1 Q ss_pred CCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 332000245675565300145662888878304540--011111014678863169996587 Q gi|254780773|r 118 MKPVVSNVSPASPAAIAGVKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 118 ~~p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) ...+|.+|.++|||+.|||++||+|++|||+++.++ +|+.+.++. +++++++++.|.+. T Consensus 26 ~g~~V~~V~~gspA~~~GL~~GD~I~~Ing~~v~~~~~~~~v~~l~~-~~~~v~l~V~~~~~ 86 (106) T 3ngh_A 26 DGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRK-SGNSVTLLVLDGDS 86 (106) T ss_dssp CSCEEECCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHHH-TTTEEEEEEECHHH T ss_pred CCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHC-CCCEEEEEEEECCC T ss_conf 99899998998979986998899999999999889999999999876-99979999996993 No 41 >2uzc_A Human pdlim5, PDZ and LIM domain 5; polymorphism, metal-binding, enigma homolog, phosphorylation, signaling protein, zinc, PDZ domain, acetylation; 1.5A {Homo sapiens} Probab=98.44 E-value=1.3e-07 Score=70.67 Aligned_cols=58 Identities=26% Similarity=0.388 Sum_probs=49.4 Q ss_pred CCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 32000245675565300145662888878304540--011111014678863169996587 Q gi|254780773|r 119 KPVVSNVSPASPAAIAGVKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 119 ~p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) ..+|..+.++|||+++||++||+|++|||+++.++ +|..+.++.. ++++++++.|+++ T Consensus 28 ~v~V~~v~~~~~A~~~gL~~GD~Il~INg~~v~~~t~~ea~~~l~~~-~~~v~L~V~R~~~ 87 (88) T 2uzc_A 28 PLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEAQNKIKGC-TGSLNMTLQRESD 87 (88) T ss_dssp EEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTC-CSEEEEEEECCCC T ss_pred CEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEEECCC T ss_conf 88999988999799869999989999999999999899999998769-9979999994797 No 42 >2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A Probab=98.43 E-value=1.1e-07 Score=71.12 Aligned_cols=55 Identities=27% Similarity=0.466 Sum_probs=47.5 Q ss_pred CCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCH--HHHHHCCCCCCCCCEEEEEEC Q ss_conf 20002456755653001456628888783045400--111110146788631699965 Q gi|254780773|r 120 PVVSNVSPASPAAIAGVKKGDCIISLDGITVSAFE--EVAPYVRENPLHEISLVLYRE 175 (349) Q Consensus 120 p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~~--dl~~~i~~~~g~~v~i~v~R~ 175 (349) ..|.+|.|+|||++|||++||+|++|||+++.++. ++.+.+++ +++++++++.|+ T Consensus 39 ~~V~~v~~~s~A~~~GL~~GD~I~~Ing~~v~~~~~~~~~~~i~~-~~~~v~L~v~rg 95 (96) T 2ego_A 39 TFVARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKA-SGNVLRLETLYG 95 (96) T ss_dssp EEEEEECTTCHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHH-TTTEEEEEEECC T ss_pred EEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHC-CCCEEEEEEEEC T ss_conf 899998999979985898899999999999889999999999876-999899999979 No 43 >1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Probab=98.43 E-value=1.7e-07 Score=69.84 Aligned_cols=57 Identities=28% Similarity=0.459 Sum_probs=49.3 Q ss_pred CCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 2000245675565300145662888878304540--011111014678863169996587 Q gi|254780773|r 120 PVVSNVSPASPAAIAGVKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 120 p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) .+|.+|.++|||+++||++||+|++|||+++.+. ++..+.++. +++++++++.|++. T Consensus 48 i~V~~V~~gs~A~~~gL~~GD~Il~VNg~~v~~~~~~~vv~~lk~-~~~~v~L~V~R~~~ 106 (110) T 1x5q_A 48 IFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRG-AGTAVQMRVWRESG 106 (110) T ss_dssp EEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHS-CCSEEEEEEEECSS T ss_pred EEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHC-CCCEEEEEEEECCC T ss_conf 899998899967975899999999999999899989999999877-99979999998998 No 44 >1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Probab=98.42 E-value=1.7e-07 Score=70.00 Aligned_cols=57 Identities=19% Similarity=0.363 Sum_probs=49.0 Q ss_pred CCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 2000245675565300-145662888878304540--011111014678863169996587 Q gi|254780773|r 120 PVVSNVSPASPAAIAG-VKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 120 p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) .+|.++.++|||+.+| |++||+|++|||+++.++ +++.+.+++. ++.+.+++.|+++ T Consensus 137 i~V~~v~~~s~A~~~G~L~~GD~Il~INg~~v~~~s~~~~~~~L~~~-~~~v~L~V~R~~d 196 (196) T 1p1d_A 137 LVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQC-EDLVKLKIRKDED 196 (196) T ss_dssp CEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHC-TTCEEEEEECCCC T ss_pred EEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEECCCC T ss_conf 77867517972665279988989998999998899999999999849-9979999983899 No 45 >2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A Probab=98.42 E-value=2.4e-07 Score=68.85 Aligned_cols=61 Identities=21% Similarity=0.446 Sum_probs=50.4 Q ss_pred CCCCCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCH--HHHHHCCCCCCCCCEEEEEECC Q ss_conf 2333320002456755653001456628888783045400--1111101467886316999658 Q gi|254780773|r 115 TGVMKPVVSNVSPASPAAIAGVKKGDCIISLDGITVSAFE--EVAPYVRENPLHEISLVLYREH 176 (349) Q Consensus 115 ~g~~~p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~~--dl~~~i~~~~g~~v~i~v~R~~ 176 (349) .+...++|.+|.++|||+++||++||+|++|||+++.++. |+.+.++..+ +++++++.+.. T Consensus 24 ~~~~~~~V~~V~~gspA~~~gl~~GD~Il~VnG~~v~~~~~~ev~~~l~~~~-~~v~L~V~~~~ 86 (91) T 2vsp_A 24 RGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSG-KNVTLLVCGKK 86 (91) T ss_dssp TTCSCCBC-CCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHTTSC-SEEEEEEEC-- T ss_pred ECCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEECCC T ss_conf 3899979999189898998699999999999999999998999999997599-96999998988 No 46 >1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A Probab=98.41 E-value=2e-07 Score=69.45 Aligned_cols=60 Identities=25% Similarity=0.449 Sum_probs=49.9 Q ss_pred CCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCCC Q ss_conf 332000245675565300145662888878304540--0111110146788631699965873 Q gi|254780773|r 118 MKPVVSNVSPASPAAIAGVKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHVG 178 (349) Q Consensus 118 ~~p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~~ 178 (349) ....|..|.|+|||+++||++||+|++|||+++.++ +|+.+.++.+ ++.+++++.|.+.+ T Consensus 27 ~~~~V~~V~~~s~A~~~Gl~~GD~Il~INg~~v~~~~~~ev~~li~~~-~~~v~L~V~~~~~~ 88 (91) T 1g9o_A 27 LGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAA-LNAVRLLVVDPETD 88 (91) T ss_dssp SSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTC-SSEEEEEEECCCCS T ss_pred CCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEECCCCC T ss_conf 997999988899699859998999999999999999899999999759-99799999899977 No 47 >1t2m_A AF-6 protein; chromosomal translocation, proto-oncogene, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2ain_A 1xz9_A 2exg_A* Probab=98.40 E-value=1.8e-07 Score=69.72 Aligned_cols=57 Identities=21% Similarity=0.344 Sum_probs=50.3 Q ss_pred CCCCCCCCCHHHHHH-CCCCCEEEEECCCCCC--CCHHHHHHCCCCCCCCCEEEEEECCCC Q ss_conf 000245675565300-1456628888783045--400111110146788631699965873 Q gi|254780773|r 121 VVSNVSPASPAAIAG-VKKGDCIISLDGITVS--AFEEVAPYVRENPLHEISLVLYREHVG 178 (349) Q Consensus 121 ~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~--s~~dl~~~i~~~~g~~v~i~v~R~~~~ 178 (349) .|.+|.|+|||+++| |++||+|++|||+++. +.+|..+.+++.+ .++++++.|.+.. T Consensus 35 ~I~~i~~gg~A~~~G~L~~GD~Il~INg~~v~~~s~~e~~~llk~~~-~~v~L~V~R~~~~ 94 (101) T 1t2m_A 35 YVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTS-SVVTLEVAKQGAL 94 (101) T ss_dssp EEEEECTTSHHHHHTCCCSSEEEEEETTEECTTCCHHHHHHHHHSCC-SEEEEEEEECCC- T ss_pred EEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEECCCC T ss_conf 99998999979975999999999999999988998999999998499-9699999938832 No 48 >1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 Probab=98.40 E-value=2e-07 Score=69.48 Aligned_cols=56 Identities=27% Similarity=0.526 Sum_probs=48.1 Q ss_pred CCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCH--HHHHHCCCCCCCCCEEEEEEC Q ss_conf 320002456755653001456628888783045400--111110146788631699965 Q gi|254780773|r 119 KPVVSNVSPASPAAIAGVKKGDCIISLDGITVSAFE--EVAPYVRENPLHEISLVLYRE 175 (349) Q Consensus 119 ~p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~~--dl~~~i~~~~g~~v~i~v~R~ 175 (349) ...|.+|.++|||+++||++||+|++|||+++.++. +....+++. ++++++++.|+ T Consensus 33 gv~V~~V~~g~~A~~~GL~~GD~Il~INg~~v~~~~~~~~~~~l~~~-~~~v~l~V~R~ 90 (91) T 1m5z_A 33 GVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAES-GNKLDLVISRN 90 (91) T ss_dssp CEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTS-TTEEEEEEEEC T ss_pred CEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEEEC T ss_conf 99999988999455271639999999999998999999999998769-99899999979 No 49 >2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens} Probab=98.39 E-value=1.7e-07 Score=69.84 Aligned_cols=58 Identities=22% Similarity=0.426 Sum_probs=48.9 Q ss_pred CCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 32000245675565300145662888878304540--011111014678863169996587 Q gi|254780773|r 119 KPVVSNVSPASPAAIAGVKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 119 ~p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) ..+|..|.++|||++|||++||+|++|||+++.++ +++.+.++. +++.+++++.|.+. T Consensus 34 gi~V~~V~~gspA~~agL~~GD~Il~VNg~~v~~~~~~e~v~~l~~-~~~~v~L~V~~~~~ 93 (128) T 2kjd_A 34 GQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRA-GGDETKLLVVDRET 93 (128) T ss_dssp SEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHT-TCSEEEEEEECHHH T ss_pred CEEEEEECCCCHHHHCCCCCCCEEEEECCEEECCCCHHHHHHHHHC-CCCEEEEEEECCCC T ss_conf 9899998998989986999899999979999678999999999976-98979999986786 No 50 >2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A Probab=98.39 E-value=2.3e-07 Score=69.03 Aligned_cols=60 Identities=25% Similarity=0.411 Sum_probs=50.3 Q ss_pred CCCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCH--HHHHHCCCCCCCCCEEEEEECCC Q ss_conf 33320002456755653001456628888783045400--11111014678863169996587 Q gi|254780773|r 117 VMKPVVSNVSPASPAAIAGVKKGDCIISLDGITVSAFE--EVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 117 ~~~p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~~--dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) ....+|..|.|+|||+++||++||+|++|||+++.+++ |+.+.++++ ++.+++++.|... T Consensus 27 ~~~~~V~~v~~g~~A~~~gl~~GD~Il~VNg~~v~~~~~~~v~~~lr~~-~~~v~l~V~~~~~ 88 (90) T 2he4_A 27 RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR-EDEARLLVVGPST 88 (90) T ss_dssp SSSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTSCHHHHHHHHTTS-SSEEEEEEECCCC T ss_pred CCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEECCCC T ss_conf 9999999989989799879999999999999998999899999998769-9979999989888 No 51 >1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A Probab=98.39 E-value=1.6e-07 Score=70.07 Aligned_cols=57 Identities=19% Similarity=0.287 Sum_probs=48.9 Q ss_pred CCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 2000245675565300145662888878304540--011111014678863169996587 Q gi|254780773|r 120 PVVSNVSPASPAAIAGVKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 120 p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) ..|..|.++|||++|||++||+|++|||+++.++ +++.+.+++. ++++++++.|... T Consensus 47 ~~V~~v~~g~~A~~aGL~~GD~Il~vng~~v~~~~~~~v~~~i~~~-~~~v~l~V~~~~~ 105 (109) T 1q3o_A 47 QYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQG-GNTLMVKVVMVTR 105 (109) T ss_dssp EEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHT-TTEEEEEEEEEEC T ss_pred EEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEEECCC T ss_conf 8999979999899849987999999999998999899999999829-9969999998998 No 52 >3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A Probab=98.39 E-value=2.2e-07 Score=69.14 Aligned_cols=56 Identities=23% Similarity=0.389 Sum_probs=48.6 Q ss_pred CCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 2000245675565300145662888878304540--011111014678863169996587 Q gi|254780773|r 120 PVVSNVSPASPAAIAGVKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 120 p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) .+|..|.|+|||+++||++||+|++|||+++.+. +++.+.++. +++++++|.|.+. T Consensus 112 i~V~~v~~g~~A~~~GL~~GD~Il~iNg~~v~~~~~~~~v~ll~~--~~~v~L~V~~~g~ 169 (192) T 3k1r_A 112 LFISHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVINLIRT--EKTVSIKVRHIGL 169 (192) T ss_dssp EEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHTS--SSEEEEEEEECCE T ss_pred EEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHCC--CCEEEEEEEECCC T ss_conf 799998999978974999999999999989999989999999708--9959999997998 No 53 >2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1 Probab=98.39 E-value=2.4e-07 Score=68.90 Aligned_cols=58 Identities=22% Similarity=0.388 Sum_probs=50.2 Q ss_pred CCCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 32000245675565300-145662888878304540--011111014678863169996587 Q gi|254780773|r 119 KPVVSNVSPASPAAIAG-VKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 119 ~p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) ...|.+|.|+|||+++| |++||+|++|||+++.++ +|+.+.+++.+ .++++++.|+++ T Consensus 54 ~i~V~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~t~~evv~ll~~~~-~~v~L~V~r~~e 114 (117) T 2fne_A 54 PIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTK-GTVTLMVLSSDE 114 (117) T ss_dssp EEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC-SSEEEEEEECSC T ss_pred CEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CCEEEEEECCCC T ss_conf 9899998789837861998889999999999988998999999997499-908999984898 No 54 >1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Probab=98.38 E-value=2.5e-07 Score=68.74 Aligned_cols=60 Identities=20% Similarity=0.259 Sum_probs=52.6 Q ss_pred CCCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCC--CHHHHHHCCCC-CCCCCEEEEEECCCC Q ss_conf 32000245675565300-14566288887830454--00111110146-788631699965873 Q gi|254780773|r 119 KPVVSNVSPASPAAIAG-VKKGDCIISLDGITVSA--FEEVAPYVREN-PLHEISLVLYREHVG 178 (349) Q Consensus 119 ~p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s--~~dl~~~i~~~-~g~~v~i~v~R~~~~ 178 (349) ..+|.+|.|++||+++| |++||+|++|||+.+.. .+|+.+.++.. ++..+++++.|+... T Consensus 50 ~i~V~~v~~~g~A~~~G~l~~GD~Il~INg~~v~~~~~~ev~~~lk~~~~g~~v~L~v~R~~~~ 113 (126) T 1wif_A 50 YLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYRGFLE 113 (126) T ss_dssp EEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCEEEEEEESSSSC T ss_pred CEEEEEECCCCHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEEEEEECCCC T ss_conf 5899998999979980999989999999999978998999999996799999899999949978 No 55 >1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Probab=98.37 E-value=2.9e-07 Score=68.30 Aligned_cols=58 Identities=22% Similarity=0.364 Sum_probs=50.1 Q ss_pred CCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCH--HHHHHCCCCCCCCCEEEEEECCC Q ss_conf 320002456755653001456628888783045400--11111014678863169996587 Q gi|254780773|r 119 KPVVSNVSPASPAAIAGVKKGDCIISLDGITVSAFE--EVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 119 ~p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~~--dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) ..+|..+.++|||+++||++||+|++|||+++.++. +..+.++. .++++++++.|++. T Consensus 31 ~~~V~~v~~~s~A~~~~L~~GD~Il~INg~~v~~~t~~~~~~li~~-~~~~v~L~V~R~~~ 90 (94) T 1vb7_A 31 PIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQ-SASPLRLQLDRSSG 90 (94) T ss_dssp EEECCCBCTTSSHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHT-CCSSEEEEEECCCC T ss_pred CEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHC-CCCEEEEEEEECCC T ss_conf 9699998587978977999999999899999999999999999877-99839999998998 No 56 >2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens} Probab=98.37 E-value=2.5e-07 Score=68.82 Aligned_cols=59 Identities=15% Similarity=0.203 Sum_probs=50.7 Q ss_pred CCCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCCC Q ss_conf 32000245675565300-145662888878304540--0111110146788631699965873 Q gi|254780773|r 119 KPVVSNVSPASPAAIAG-VKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHVG 178 (349) Q Consensus 119 ~p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~~ 178 (349) ..+|..+.|+|||+++| |++||+|++|||+++..+ ++..+.++.. ++.+++++.|++.. T Consensus 30 gi~I~~v~~g~~A~~~G~L~~GD~Il~VNg~~v~~~~~~~v~~~l~~~-~~~v~l~v~R~~~p 91 (95) T 2vwr_A 30 GVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQAS-GERVNLTIARPGKP 91 (95) T ss_dssp SEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHC-CSEEEEEEEEESCS T ss_pred CEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEECCCCC T ss_conf 999999899997998299999999999999994689999999999749-99699999839989 No 57 >2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens} Probab=98.36 E-value=2.1e-07 Score=69.36 Aligned_cols=57 Identities=25% Similarity=0.430 Sum_probs=50.1 Q ss_pred CCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 2000245675565300-145662888878304540--011111014678863169996587 Q gi|254780773|r 120 PVVSNVSPASPAAIAG-VKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 120 p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) .+|..|.|+|||+++| |++||+|++|||+++.+. ++..+.+++. +.++++++.|.++ T Consensus 35 i~V~~v~~gg~A~~~G~L~~GD~I~~INg~~v~~~t~~~~~~~lr~~-~~~v~l~v~R~~~ 94 (97) T 2iwn_A 35 IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT-GQTVLLTLMRRGE 94 (97) T ss_dssp CEEEEECTTCHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHTC-CSEEEEEEEEEEE T ss_pred EEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEEECCC T ss_conf 89999889996897399999999999999997899899999998769-9869999993899 No 58 >2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus} Probab=98.36 E-value=1.7e-07 Score=69.89 Aligned_cols=59 Identities=24% Similarity=0.410 Sum_probs=49.5 Q ss_pred CCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCH--HHHHHCCCCCCCCCEEEEEECCC Q ss_conf 3320002456755653001456628888783045400--11111014678863169996587 Q gi|254780773|r 118 MKPVVSNVSPASPAAIAGVKKGDCIISLDGITVSAFE--EVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 118 ~~p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~~--dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) ...+|.+|.++|||+++||++||+|++|||+++.++. ++.+.++. +++++++++.|.+. T Consensus 38 ~g~~V~~v~~gspA~~~Gl~~GD~Il~Ing~~v~~~~~~~~~~~lr~-~~~~v~l~v~~~~~ 98 (114) T 2edz_A 38 DGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRK-SGNSVTLLVLDGDS 98 (114) T ss_dssp CSCEEECCCTTCTTGGGTCCTTCEEEEESSSBCSSSCHHHHHHHHHH-TCSEEEEEEECHHH T ss_pred CCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHC-CCCEEEEEEEECCC T ss_conf 89999998998989985998899999999977420889999999877-98989999996997 No 59 >2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Probab=98.36 E-value=2.1e-07 Score=69.22 Aligned_cols=60 Identities=23% Similarity=0.519 Sum_probs=49.9 Q ss_pred CCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCH--HHHHHCCCCCCCCCEEEEEECCCC Q ss_conf 3320002456755653001456628888783045400--111110146788631699965873 Q gi|254780773|r 118 MKPVVSNVSPASPAAIAGVKKGDCIISLDGITVSAFE--EVAPYVRENPLHEISLVLYREHVG 178 (349) Q Consensus 118 ~~p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~~--dl~~~i~~~~g~~v~i~v~R~~~~ 178 (349) ...+|..|.++|||+++||++||+|++|||+++.++. |+.+.+++. ++.+++++.|...+ T Consensus 30 ~g~~V~~v~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~ev~~~i~~~-~~~v~l~V~~~~~~ 91 (102) T 2d90_A 30 KGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKG-GDQTTLLVLDKEAE 91 (102) T ss_dssp SSEEEECCCTTSTTTTTTCCTTCEEEEESSCBCTTSCHHHHHHHHHHS-TTEEEEEECSTTCC T ss_pred CCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEECCCCC T ss_conf 998999989999899869988999999999998999899999999749-99699999978984 No 60 >3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus} Probab=98.36 E-value=2.9e-07 Score=68.28 Aligned_cols=57 Identities=19% Similarity=0.275 Sum_probs=48.9 Q ss_pred CCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 2000245675565300145662888878304540--011111014678863169996587 Q gi|254780773|r 120 PVVSNVSPASPAAIAGVKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 120 p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) .+|..|.++|||+.|||++||+|++|||+++.++ ++..+.++. +++.+++++.|... T Consensus 67 ~~I~~V~~g~~A~~aGL~~GD~Il~VNg~~v~~~~~~~~v~~i~~-~~~~v~l~v~~~~~ 125 (132) T 3l4f_D 67 QYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQ-GGNTLMVKVVMVTR 125 (132) T ss_dssp EEEEEECTTSGGGGGTCCTTCEEEEESSSBCTTSCHHHHHHHHHH-TTTEEEEEEECCCC T ss_pred EEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHC-CCCEEEEEEEECCC T ss_conf 899996999979984998899999999989999989999999981-99969999998998 No 61 >3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synaptic density, glutametergic receptors, carbohydrate metabolism, cell cycle; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A Probab=98.35 E-value=2.4e-07 Score=68.85 Aligned_cols=55 Identities=20% Similarity=0.340 Sum_probs=49.5 Q ss_pred CCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCC--CHHHHHHCCCCCCCCCEEEEEEC Q ss_conf 2000245675565300-14566288887830454--00111110146788631699965 Q gi|254780773|r 120 PVVSNVSPASPAAIAG-VKKGDCIISLDGITVSA--FEEVAPYVRENPLHEISLVLYRE 175 (349) Q Consensus 120 p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s--~~dl~~~i~~~~g~~v~i~v~R~ 175 (349) -+|..|.++|||+.+| |++||+|++|||+++.+ .++...+++..+ .+++++|.|+ T Consensus 113 i~I~~V~~gg~A~~~G~L~~GD~Il~VNg~~l~~~s~~eav~~lr~~~-~~v~L~V~R~ 170 (170) T 3egg_C 113 IFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTK-GRVRFMIGRE 170 (170) T ss_dssp EEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBCHHHHHHHHHHCC-SEEEEEEEEC T ss_pred EEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEEC T ss_conf 899997999969984999889999999999888998999999998799-8699999969 No 62 >2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=98.35 E-value=3.9e-07 Score=67.42 Aligned_cols=56 Identities=21% Similarity=0.318 Sum_probs=48.8 Q ss_pred CCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCC--CHHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 200024567556530014566288887830454--0011111014678863169996587 Q gi|254780773|r 120 PVVSNVSPASPAAIAGVKKGDCIISLDGITVSA--FEEVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 120 p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s--~~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) .+|.+|.++|||+++||++||+|++|||+++.+ .+|+.+.++. +.++++++.|.+. T Consensus 38 v~V~~v~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~v~ll~~--~~~v~L~V~r~~~ 95 (100) T 2eeh_A 38 IFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTTMGSAVKVLTS--SSRLHMMVRRMGS 95 (100) T ss_dssp EEEEEECTTSHHHHHTCCSSCEEEEETTEECSSCCHHHHHHHHHS--CSSEEEEEEECSC T ss_pred EEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHC--CCEEEEEEEECCC T ss_conf 899998689967857999999999999999999989999998708--9959999998996 No 63 >2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genomics consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1 Probab=98.34 E-value=2.7e-07 Score=68.55 Aligned_cols=57 Identities=14% Similarity=0.264 Sum_probs=49.5 Q ss_pred CCCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCC--CHHHHHHCCCCCCCCCEEEEEECC Q ss_conf 32000245675565300-14566288887830454--001111101467886316999658 Q gi|254780773|r 119 KPVVSNVSPASPAAIAG-VKKGDCIISLDGITVSA--FEEVAPYVRENPLHEISLVLYREH 176 (349) Q Consensus 119 ~p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s--~~dl~~~i~~~~g~~v~i~v~R~~ 176 (349) ..+|.+|.|+|||+++| |++||+|++|||+++.+ .+|..+.+++. ++++++++.|.. T Consensus 55 ~i~V~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~v~llr~~-~~~v~L~V~Rp~ 114 (117) T 2byg_A 55 SIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNT-SEVVYLKVGKPT 114 (117) T ss_dssp CEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTC-CSEEEEEEEEEE T ss_pred CEEEEEECCCCCHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEECCC T ss_conf 889999889975898199988999999999998899899999999728-996999995777 No 64 >2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylation, SH3 domain, protein bindin; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A Probab=98.34 E-value=2.7e-07 Score=68.59 Aligned_cols=56 Identities=20% Similarity=0.437 Sum_probs=48.1 Q ss_pred CCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCC--CHHHHHHCCCCCCCCCEEEEEECC Q ss_conf 2000245675565300-14566288887830454--001111101467886316999658 Q gi|254780773|r 120 PVVSNVSPASPAAIAG-VKKGDCIISLDGITVSA--FEEVAPYVRENPLHEISLVLYREH 176 (349) Q Consensus 120 p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s--~~dl~~~i~~~~g~~v~i~v~R~~ 176 (349) ..|..|.++|||+++| |++||+|++|||+++.. .++....+++. +..+++++.|++ T Consensus 23 i~I~~v~~~g~A~~~G~L~~GD~Il~vNg~~v~~~~~~~~~~~i~~~-~~~v~l~v~R~d 81 (81) T 2rcz_A 23 IFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERS-KGKLKMVVQRDE 81 (81) T ss_dssp EEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHHTS-TTEEEEEEEC-- T ss_pred EEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEEECC T ss_conf 89999899997998699989999999999998889899999998779-897999999696 No 65 >3cyy_A Tight junction protein ZO-1; protein-ligand complex, alternative splicing, cell junction, membrane, phosphoprotein, polymorphism; 2.40A {Homo sapiens} Probab=98.34 E-value=2.6e-07 Score=68.68 Aligned_cols=58 Identities=19% Similarity=0.421 Sum_probs=49.9 Q ss_pred CCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCC--CCHHHHHHCCCCCCCCCEEEEEECCCC Q ss_conf 2000245675565300-1456628888783045--400111110146788631699965873 Q gi|254780773|r 120 PVVSNVSPASPAAIAG-VKKGDCIISLDGITVS--AFEEVAPYVRENPLHEISLVLYREHVG 178 (349) Q Consensus 120 p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~--s~~dl~~~i~~~~g~~v~i~v~R~~~~ 178 (349) -+|.+|.++|||+++| |++||+|++|||+++. +.++..+.++.. +.++++++.|++.. T Consensus 25 v~V~~V~~~~~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~ll~~~-~~~v~l~v~r~~~~ 85 (92) T 3cyy_A 25 IFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERS-KGKLKMVVQRDERA 85 (92) T ss_dssp EEEEEECTTCHHHHSCCCCTTCEEEEETTEECTTCCHHHHHHHHHTT-TTEEEEEEEC---- T ss_pred EEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEEECCCC T ss_conf 89999899998998599989999999999997789999999998779-99899999999931 No 66 >3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens} Probab=98.34 E-value=1.7e-07 Score=69.86 Aligned_cols=57 Identities=18% Similarity=0.381 Sum_probs=48.9 Q ss_pred CCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 2000245675565300-145662888878304540--011111014678863169996587 Q gi|254780773|r 120 PVVSNVSPASPAAIAG-VKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 120 p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) ..|.+|.|+|||+++| |++||+|++|||+++.++ +|..+.+++.+ .++++++.|+-+ T Consensus 23 i~I~~V~~gg~A~~~G~L~~GD~Il~INg~~v~~~s~~ea~~~i~~~~-~~v~L~V~R~ie 82 (88) T 3e17_A 23 IFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSR-GKLQLVVLRDLE 82 (88) T ss_dssp EEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHTT-TEEEEEECCC-- T ss_pred EEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEECCC T ss_conf 899998999989983999989999999999988998999999998799-979999998981 No 67 >3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.00A {Bacteroides fragilis nctc 9343} Probab=98.34 E-value=1.9e-06 Score=62.76 Aligned_cols=36 Identities=33% Similarity=0.562 Sum_probs=32.1 Q ss_pred CCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCHH Q ss_conf 200024567556530014566288887830454001 Q gi|254780773|r 120 PVVSNVSPASPAAIAGVKKGDCIISLDGITVSAFEE 155 (349) Q Consensus 120 p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~~d 155 (349) -.|..|.|+|||++|||++||+|++|||+++..... T Consensus 92 ~~V~~V~~gsPA~~aGL~~GD~I~aInG~~v~~~~~ 127 (403) T 3k50_A 92 ALISYVVPGSPAEEAGLQRGHWIMMMNGDYITKKVE 127 (403) T ss_dssp EEEEEECTTSHHHHTTCCTTCEEEEETTBCBCTTTG T ss_pred EEEEEECCCCCHHHCCCCCCCEEEEECCEECCCCCH T ss_conf 999996489927875899899899989997445420 No 68 >2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=98.34 E-value=4.6e-07 Score=66.94 Aligned_cols=58 Identities=21% Similarity=0.253 Sum_probs=50.0 Q ss_pred CCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCC--CHHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 3200024567556530014566288887830454--0011111014678863169996587 Q gi|254780773|r 119 KPVVSNVSPASPAAIAGVKKGDCIISLDGITVSA--FEEVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 119 ~p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s--~~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) ..+|..|.+++||+++||++||+|++|||+++.+ .+|+.+.++.. ++++++++.|+.. T Consensus 33 ~~~V~~v~~g~~a~~~gL~~GD~Il~VNg~~v~~~s~~evv~ll~~~-~~~v~L~V~r~ps 92 (94) T 2eeg_A 33 PLTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKGC-HDHLTLSVSSGPS 92 (94) T ss_dssp CCEECCCCSSSHHHHTTCCTTCEEEEETTEETTTCCHHHHHHHHHTC-CSCEEEEEECCSS T ss_pred CEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEEECCC T ss_conf 97999977999899879999999998999999999899999999769-9849999992899 No 69 >1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B Probab=98.34 E-value=4.6e-07 Score=66.95 Aligned_cols=59 Identities=14% Similarity=0.278 Sum_probs=47.3 Q ss_pred CCCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 32000245675565300-145662888878304540--011111014678863169996587 Q gi|254780773|r 119 KPVVSNVSPASPAAIAG-VKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 119 ~p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) ..+|..|.++|||++|| |++||+|++|||+++..+ +|+.+.++..++......+.|+.. T Consensus 27 ~i~V~~i~~gspA~~aG~L~~GD~Il~INg~~v~~~~~~~v~~~l~~~~~~~~~~l~~~~~~ 88 (112) T 1qau_A 27 PVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPE 88 (112) T ss_dssp CEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSSEEEEEEECCT T ss_pred CEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEEEEECCC T ss_conf 99999989999899819996799999999999989989999999867999938999997999 No 70 >2r4h_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; transferase, structural genomics, structural genomics consortium, SGC; HET: HIS; 2.05A {Homo sapiens} Probab=98.34 E-value=2.6e-07 Score=68.67 Aligned_cols=58 Identities=21% Similarity=0.364 Sum_probs=49.9 Q ss_pred CCCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 32000245675565300-145662888878304540--011111014678863169996587 Q gi|254780773|r 119 KPVVSNVSPASPAAIAG-VKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 119 ~p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) ..+|..|.++|||+++| |++||+|++|||+++.+. +|..+.+++. ++++++++.|.+. T Consensus 50 ~i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~~~t~~evv~llk~~-~~~v~L~v~R~~~ 110 (112) T 2r4h_A 50 DLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNG-GRRVRLFLKRGET 110 (112) T ss_dssp CEEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHTT-TTEEEEEEECCEE T ss_pred CEEEEEECCCCHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEEECCC T ss_conf 999999868998998299999999998999999999799999998769-9839999996997 No 71 >1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1 Probab=98.34 E-value=2.8e-07 Score=68.39 Aligned_cols=56 Identities=30% Similarity=0.461 Sum_probs=48.8 Q ss_pred CCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCC--CCHHHHHHCCCCCCCCCEEEEEECC Q ss_conf 2000245675565300-1456628888783045--4001111101467886316999658 Q gi|254780773|r 120 PVVSNVSPASPAAIAG-VKKGDCIISLDGITVS--AFEEVAPYVRENPLHEISLVLYREH 176 (349) Q Consensus 120 p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~--s~~dl~~~i~~~~g~~v~i~v~R~~ 176 (349) -+|.+|.|+|||+++| |++||+|++|||+++. +.+|..+.+++. +.++++++.|.+ T Consensus 39 i~I~~v~~~g~A~~~g~L~~GD~Il~INg~~v~~~s~~~~~~li~~~-~~~v~L~V~r~d 97 (98) T 1ihj_A 39 IFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEA-DFKIELEIQTFD 97 (98) T ss_dssp EEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHHS-CSEEEEEEEEC- T ss_pred EEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEEECC T ss_conf 89999799997998099999999999999998899899999999879-996999999698 No 72 >2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, structural genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1 Probab=98.34 E-value=3.3e-07 Score=67.91 Aligned_cols=57 Identities=23% Similarity=0.390 Sum_probs=48.8 Q ss_pred CCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCC--CCHHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 2000245675565300-1456628888783045--40011111014678863169996587 Q gi|254780773|r 120 PVVSNVSPASPAAIAG-VKKGDCIISLDGITVS--AFEEVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 120 p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~--s~~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) -.|.+|.++|||+++| |++||+|++|||+++. +.++..+.+++ +++.+++++.|... T Consensus 41 i~V~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~l~~-~~~~v~L~v~r~~~ 100 (103) T 2fcf_A 41 IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRK-AGNPVVFMVQSIIS 100 (103) T ss_dssp EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT-CCSSEEEEEECCCC T ss_pred EEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHC-CCCEEEEEEEECCC T ss_conf 8999989999289729999899999999999889989999999984-89959999996776 No 73 >2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A Probab=98.33 E-value=3.4e-07 Score=67.88 Aligned_cols=57 Identities=14% Similarity=0.275 Sum_probs=49.2 Q ss_pred CCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCC--CHHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 2000245675565300-14566288887830454--0011111014678863169996587 Q gi|254780773|r 120 PVVSNVSPASPAAIAG-VKKGDCIISLDGITVSA--FEEVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 120 p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s--~~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) .+|.+|.|+|||+++| |++||+|++|||.++.+ .+|..+.+++. ++++++++.|... T Consensus 35 i~V~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~t~~eav~~lr~~-~~~v~L~V~R~~~ 94 (105) T 2awx_A 35 IYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNT-SDFVYLKVAKPTS 94 (105) T ss_dssp EEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHSC-CSEEEEEEECCCC T ss_pred EEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEECCCC T ss_conf 89999887981898499988999999999997899799999999818-9969999988877 No 74 >1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Probab=98.33 E-value=5e-07 Score=66.68 Aligned_cols=57 Identities=26% Similarity=0.415 Sum_probs=49.3 Q ss_pred CCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 2000245675565300-145662888878304540--011111014678863169996587 Q gi|254780773|r 120 PVVSNVSPASPAAIAG-VKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 120 p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) -+|.+|.|+|||+++| |++||+|++|||+++.++ +|..+.+++. .+++++++.|+.. T Consensus 40 i~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~l~~~-~~~v~l~v~R~~~ 99 (105) T 1wha_A 40 IFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAA-SPTIALLLEREAG 99 (105) T ss_dssp CEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSC-CSCEEEEEEECCC T ss_pred EEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEEECCC T ss_conf 89999899994797199888999999999997899899999999759-9849999998999 No 75 >1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Probab=98.32 E-value=4.3e-07 Score=67.17 Aligned_cols=59 Identities=22% Similarity=0.374 Sum_probs=50.1 Q ss_pred CCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCCC Q ss_conf 32000245675565300145662888878304540--0111110146788631699965873 Q gi|254780773|r 119 KPVVSNVSPASPAAIAGVKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHVG 178 (349) Q Consensus 119 ~p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~~ 178 (349) ..+|..|.+++||+++||++||+|++|||+++.++ +|..+.++.. ++++++++.|+... T Consensus 30 ~i~V~~v~~~~~a~~~~L~~GD~Il~INg~~v~~~t~~eav~~l~~~-~~~v~L~V~R~~~~ 90 (103) T 1wf7_A 30 PLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKAC-TGSLNMTLQRASAA 90 (103) T ss_dssp EEEECCCCTTCHHHHTTCCTTCBEEEETTEECSSCCHHHHHHHHHHC-SSEEEEEECCCSCC T ss_pred CEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEEECCCC T ss_conf 98999978999899869999999999999988999899999999849-99699999989977 No 76 >2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, alternative splicing; 1.5A {Homo sapiens} Probab=98.32 E-value=3.7e-07 Score=67.57 Aligned_cols=58 Identities=28% Similarity=0.483 Sum_probs=50.7 Q ss_pred CCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCCC Q ss_conf 2000245675565300-145662888878304540--0111110146788631699965873 Q gi|254780773|r 120 PVVSNVSPASPAAIAG-VKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHVG 178 (349) Q Consensus 120 p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~~ 178 (349) .+|..|.|+|||+++| |++||+|++|||.++.++ +|..+.++..+ +++++++.|+-.+ T Consensus 34 i~V~~i~~~s~A~~~g~L~~GD~Il~INg~~v~~~~~~e~~~~l~~~~-~~v~L~v~r~~~~ 94 (97) T 2jil_A 34 VVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCG-QEAALLIEYDVSE 94 (97) T ss_dssp EEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHSC-SEEEEEEEEECCC T ss_pred EEEEEECCCCHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEECCCC T ss_conf 999998999968970989899999999999978998999999998299-9699999978978 No 77 >1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Probab=98.32 E-value=4.5e-07 Score=66.99 Aligned_cols=59 Identities=27% Similarity=0.372 Sum_probs=51.3 Q ss_pred CCCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCCC--HHHHHHCCCC-CCCCCEEEEEECCC Q ss_conf 32000245675565300-145662888878304540--0111110146-78863169996587 Q gi|254780773|r 119 KPVVSNVSPASPAAIAG-VKKGDCIISLDGITVSAF--EEVAPYVREN-PLHEISLVLYREHV 177 (349) Q Consensus 119 ~p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s~--~dl~~~i~~~-~g~~v~i~v~R~~~ 177 (349) ..+|.+|.++|||+++| |++||+|++|||+++..+ +|+++.++.. ++.++++++.|... T Consensus 45 ~i~I~~v~~~g~A~~~g~L~~GD~Il~INg~~v~~~~~~e~~~~l~~~~~~~~v~L~v~R~~~ 107 (123) T 1ueq_A 45 FLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGYP 107 (123) T ss_dssp CCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEESCC T ss_pred CEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEEEEEECCC T ss_conf 889999889997998389988879999899672798899999999669999989999982998 No 78 >2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A Probab=98.31 E-value=4.6e-07 Score=66.93 Aligned_cols=57 Identities=12% Similarity=0.265 Sum_probs=49.5 Q ss_pred CCCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCC--CHHHHHHCCCCCCCCCEEEEEECC Q ss_conf 32000245675565300-14566288887830454--001111101467886316999658 Q gi|254780773|r 119 KPVVSNVSPASPAAIAG-VKKGDCIISLDGITVSA--FEEVAPYVRENPLHEISLVLYREH 176 (349) Q Consensus 119 ~p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s--~~dl~~~i~~~~g~~v~i~v~R~~ 176 (349) ..+|.+|.|+|||+++| |++||+|++|||+++.+ .+|..+.+++. ++++++++.|.+ T Consensus 34 ~i~V~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lr~~-~~~v~L~v~R~g 93 (94) T 2fe5_A 34 SIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNT-SDMVYLKVAKPG 93 (94) T ss_dssp CEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTC-CSEEEEEEECCC T ss_pred CEEEEEECCCCCHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEECCC T ss_conf 889999888976898199999999999999998899899999999739-996999998999 No 79 >2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus} Probab=98.31 E-value=4.4e-07 Score=67.10 Aligned_cols=55 Identities=24% Similarity=0.352 Sum_probs=48.7 Q ss_pred CCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCC--CHHHHHHCCCC-CCCCCEEEEEE Q ss_conf 2000245675565300-14566288887830454--00111110146-78863169996 Q gi|254780773|r 120 PVVSNVSPASPAAIAG-VKKGDCIISLDGITVSA--FEEVAPYVREN-PLHEISLVLYR 174 (349) Q Consensus 120 p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s--~~dl~~~i~~~-~g~~v~i~v~R 174 (349) ..|.++.|+|||+++| |++||+|++|||+++.+ .+|+.+.++.. ++.++++++.| T Consensus 27 i~V~~i~~~g~A~~~G~l~~GD~Il~VNg~~v~~~~~~ev~~~l~~~~~g~~v~L~v~R 85 (85) T 2i04_A 27 LQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCR 85 (85) T ss_dssp EEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCTTCEEEEEEEC T ss_pred EEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEEEEEC T ss_conf 99999889996998298989999999999998899699999999769998999999989 No 80 >1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Probab=98.31 E-value=3.9e-07 Score=67.46 Aligned_cols=59 Identities=22% Similarity=0.415 Sum_probs=50.1 Q ss_pred CCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCCC Q ss_conf 32000245675565300145662888878304540--0111110146788631699965873 Q gi|254780773|r 119 KPVVSNVSPASPAAIAGVKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHVG 178 (349) Q Consensus 119 ~p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~~ 178 (349) ..+|..|.+++||+.+||++||+|++|||+++.++ +|..+.+++. ++.+++++.|.+.. T Consensus 30 ~i~V~~v~~gs~A~~~gL~~GD~Il~VNg~~v~~~s~~eav~~l~~~-~~~v~L~v~R~~~~ 90 (103) T 1v5l_A 30 PLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAA-SYQLCLKIDRAETR 90 (103) T ss_dssp EEECSCBCTTSTTGGGTCCTTCBEEEETTEECSSCCHHHHHHHHTTC-CSEEECEECCCTTT T ss_pred CEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEEECCCC T ss_conf 96998978989789769999999999999985899899999998769-99799999989954 No 81 >1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A Probab=98.31 E-value=4.6e-07 Score=66.94 Aligned_cols=57 Identities=21% Similarity=0.411 Sum_probs=49.6 Q ss_pred CCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 2000245675565300-145662888878304540--011111014678863169996587 Q gi|254780773|r 120 PVVSNVSPASPAAIAG-VKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 120 p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) -+|..|.++|||+++| |++||+|++|||.++.++ ++..+.+++. ++.+++++.|+.. T Consensus 35 i~V~~v~~gs~A~~~g~l~~GD~Il~INg~~v~~~~~~e~v~~l~~~-~~~v~L~v~R~~~ 94 (96) T 1d5g_A 35 IYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNT-GQVVHLLLEKGQS 94 (96) T ss_dssp CEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHSC-CSEEEEEEECCSC T ss_pred EEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEECCCC T ss_conf 99999899998998399999999999999998899899999998779-9869999983898 No 82 >1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Probab=98.30 E-value=2.9e-07 Score=68.31 Aligned_cols=58 Identities=16% Similarity=0.339 Sum_probs=49.7 Q ss_pred CCCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCC--CHHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 32000245675565300-14566288887830454--0011111014678863169996587 Q gi|254780773|r 119 KPVVSNVSPASPAAIAG-VKKGDCIISLDGITVSA--FEEVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 119 ~p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s--~~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) ..+|..|.|+|||+++| |++||+|++|||+++.+ .+|+.+.++.. +.++++++.|... T Consensus 44 ~~~V~~v~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~~v~~llr~~-~~~v~L~v~r~~~ 104 (114) T 1uew_A 44 PHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKDA-GLSVTLRIIPQEE 104 (114) T ss_dssp SCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHHHHHT-TTEEEEEECCCSC T ss_pred CEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEEECCC T ss_conf 979999899997998599999999999999998899799999999779-9849999995897 No 83 >2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=98.29 E-value=3.7e-07 Score=67.63 Aligned_cols=62 Identities=24% Similarity=0.358 Sum_probs=49.8 Q ss_pred CCCCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCCC Q ss_conf 33332000245675565300145662888878304540--0111110146788631699965873 Q gi|254780773|r 116 GVMKPVVSNVSPASPAAIAGVKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHVG 178 (349) Q Consensus 116 g~~~p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~~ 178 (349) +....+|.+|.++|||++|||++||+|++|||+++.++ +++.+.++.. ++++++++.|...+ T Consensus 30 ~~~gi~I~~V~~gs~A~~aGL~~GD~Il~INg~~v~~~~~~ev~~~l~~~-~~~v~l~v~~~~~~ 93 (106) T 2eei_A 30 GKKGVYMTDITPQGVAMRAGVLADDHLIEVNGENVEDASHEEVVEKVKKS-GSRVMFLLVDKETD 93 (106) T ss_dssp SCCSCEECCCCTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHHHH-CSEEEEEECCTTTS T ss_pred CCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEECCCCC T ss_conf 89998999968999799779988999999999999999999999999769-99699999878977 No 84 >2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Probab=98.28 E-value=4.2e-07 Score=67.25 Aligned_cols=57 Identities=16% Similarity=0.266 Sum_probs=50.4 Q ss_pred CCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCC--CCHHHHHHCCCCCCCCCEEEEEECC Q ss_conf 2000245675565300-1456628888783045--4001111101467886316999658 Q gi|254780773|r 120 PVVSNVSPASPAAIAG-VKKGDCIISLDGITVS--AFEEVAPYVRENPLHEISLVLYREH 176 (349) Q Consensus 120 p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~--s~~dl~~~i~~~~g~~v~i~v~R~~ 176 (349) .+|.+|.++|||+++| |++||+|++|||+++. +.+|..+.++..+..++.+++.|.- T Consensus 46 i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~llk~~~~~~V~L~v~r~p 105 (108) T 2d92_A 46 IVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGICSGP 105 (108) T ss_dssp EEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHHHHSCSEEEEEEEECCC T ss_pred EEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCEEEEEEEECC T ss_conf 899998999958963999969999999999988998999999996289986999999489 No 85 >2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=98.28 E-value=7.4e-07 Score=65.53 Aligned_cols=60 Identities=18% Similarity=0.264 Sum_probs=49.5 Q ss_pred CCCCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCC--CHHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 3333200024567556530014566288887830454--0011111014678863169996587 Q gi|254780773|r 116 GVMKPVVSNVSPASPAAIAGVKKGDCIISLDGITVSA--FEEVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 116 g~~~p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s--~~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) +..+.+|..|.|+|||+ +||++||+|++|||+++.+ .+|..+.++.. ++.+++++.|... T Consensus 29 ~~~pi~V~~V~~gspA~-~~L~~GD~Il~INg~~v~~~s~~e~~~llk~~-~~~v~L~V~r~~~ 90 (96) T 2edv_A 29 ESLPLTVVAVTAGGSAH-GKLFPGDQILQMNNEPAEDLSWERAVDILREA-EDSLSITVVRCTS 90 (96) T ss_dssp SSSSCBCCCBCSSSSST-TTSCTTCBEEEESSCBSTTCCHHHHHHHHHHC-SSCEEEEEEECCC T ss_pred CCCCEEEEEECCCCCCC-CCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEEECCC T ss_conf 99997999989899000-27899999999999998899899999999759-9859999998959 No 86 >2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens} Probab=98.28 E-value=2.6e-07 Score=68.71 Aligned_cols=59 Identities=22% Similarity=0.410 Sum_probs=49.1 Q ss_pred CCCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCH--HHHHHCCCCCCCCCEEEEEECC Q ss_conf 33320002456755653001456628888783045400--1111101467886316999658 Q gi|254780773|r 117 VMKPVVSNVSPASPAAIAGVKKGDCIISLDGITVSAFE--EVAPYVRENPLHEISLVLYREH 176 (349) Q Consensus 117 ~~~p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~~--dl~~~i~~~~g~~v~i~v~R~~ 176 (349) .....|.+|.++|||++|||++||+|++|||+++.+.+ ++.+.++. .++.+++++.|.+ T Consensus 32 ~~g~~V~~v~~gspA~~~gL~~GD~Il~INg~~v~~~s~~~v~~lik~-~~~~v~l~V~~~~ 92 (98) T 2jxo_A 32 KPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRA-GGDETKLLVVDRE 92 (98) T ss_dssp SSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHT-TTTEEEEEECCHH T ss_pred CCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHC-CCCEEEEEEECCC T ss_conf 999899998899989987999999999999999889999999999877-9997999998888 No 87 >2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- virus interaction, structural genomics consortium, synaptosome; 1.80A {Homo sapiens} Probab=98.27 E-value=4.8e-07 Score=66.82 Aligned_cols=56 Identities=23% Similarity=0.377 Sum_probs=47.8 Q ss_pred CCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECC Q ss_conf 2000245675565300-145662888878304540--01111101467886316999658 Q gi|254780773|r 120 PVVSNVSPASPAAIAG-VKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREH 176 (349) Q Consensus 120 p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~ 176 (349) -.|.+|.|+|||+++| |++||+|++|||+++.++ +|..+.+++. ++++++++.|.- T Consensus 61 i~I~~V~~~s~A~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~l~~~-~~~v~l~V~r~~ 119 (123) T 2iwq_A 61 IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKA-GNPVVFMVQSII 119 (123) T ss_dssp EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHC-CSSEEEEEECCC T ss_pred EEEEEECCCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEEECC T ss_conf 89999899981787289989999999999998899999999999859-996999999677 No 88 >2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens} Probab=98.27 E-value=7.1e-07 Score=65.64 Aligned_cols=58 Identities=21% Similarity=0.373 Sum_probs=49.4 Q ss_pred CCCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCC---CCHHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 32000245675565300-1456628888783045---40011111014678863169996587 Q gi|254780773|r 119 KPVVSNVSPASPAAIAG-VKKGDCIISLDGITVS---AFEEVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 119 ~p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~---s~~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) .-+|.+|.|++||+++| |++||+|++|||+++. +.++..+.++..+ ..+++++.|+.. T Consensus 55 gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~t~~ea~~ll~~~~-~~v~L~v~r~~~ 116 (128) T 2db5_A 55 DIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQTT-GSLRLIVAREPV 116 (128) T ss_dssp EEEEECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSCHHHHHHHHHHCC-SEEEEEEEECCC T ss_pred CEEEEEECCCCHHHHHCCCCCCCEEEEECCEECCCCCCHHHHHHHHHHCC-CEEEEEEEECCC T ss_conf 88999978998044208999999999999999887999999999998089-959999985898 No 89 >2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A Probab=98.27 E-value=6.4e-07 Score=65.97 Aligned_cols=59 Identities=22% Similarity=0.341 Sum_probs=50.2 Q ss_pred CCCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCCC Q ss_conf 32000245675565300-145662888878304540--0111110146788631699965873 Q gi|254780773|r 119 KPVVSNVSPASPAAIAG-VKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHVG 178 (349) Q Consensus 119 ~p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~~ 178 (349) ..+|..|.|+|||+++| |++||+|++|||.++.+. ++..+.+++. +.++++++.|+.+. T Consensus 38 gi~V~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~lk~~-~~~v~L~V~R~~~~ 99 (101) T 2jik_A 38 GIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNA-GYAVSLRVQHRLES 99 (101) T ss_dssp CEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHTC-CSEEEEEEEEESCC T ss_pred CEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEEECCCC T ss_conf 979999899993897399999999999999998899899999999839-99799999958988 No 90 >1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Probab=98.27 E-value=5.9e-07 Score=66.18 Aligned_cols=56 Identities=21% Similarity=0.349 Sum_probs=48.2 Q ss_pred CCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCC--CHHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 200024567556530014566288887830454--0011111014678863169996587 Q gi|254780773|r 120 PVVSNVSPASPAAIAGVKKGDCIISLDGITVSA--FEEVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 120 p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s--~~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) -+|.+|.|++||+++||++||+|++|||+++.+ .+|+.+.++.+ .++.+++.|.+. T Consensus 48 v~V~~V~~g~~A~~~gl~~GD~Il~INg~~v~~~~~~~vv~~lr~~--~~v~l~V~~~~~ 105 (128) T 1uf1_A 48 IYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKSS--RHLILTVKDVGR 105 (128) T ss_dssp CEEEEECTTCHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHTTC--SEEEEEEECCSC T ss_pred EEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC--CCEEEEEEECCC T ss_conf 8999978999799759988989999999998899899999998579--948999997996 No 91 >2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=98.26 E-value=7e-07 Score=65.69 Aligned_cols=57 Identities=18% Similarity=0.269 Sum_probs=47.4 Q ss_pred CCCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCC-CCHHHHHHCCCCCCCCCEEEEEECC Q ss_conf 32000245675565300-1456628888783045-4001111101467886316999658 Q gi|254780773|r 119 KPVVSNVSPASPAAIAG-VKKGDCIISLDGITVS-AFEEVAPYVRENPLHEISLVLYREH 176 (349) Q Consensus 119 ~p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~-s~~dl~~~i~~~~g~~v~i~v~R~~ 176 (349) ..+|.+|.++|||+++| |++||+|++|||+++. +.+|+.+.++..+ .++++++.+.. T Consensus 30 ~i~V~~v~~gspA~~~G~L~~GD~Il~VNg~~v~~~~~ev~~ll~~~~-~~v~L~v~~~p 88 (91) T 2e7k_A 30 ELVIARILHGGMVAQQGLLHVGDIIKEVNGQPVGSDPRALQELLRNAS-GSVILKILSGP 88 (91) T ss_dssp SEEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCHHHHHHHHHTCC-SSBCEEEECCS T ss_pred CEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCHHHHHHHHHCCC-CCEEEEEECCC T ss_conf 599999789998998787766999999999987898999999986698-96999998289 No 92 >2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens} Probab=98.26 E-value=8.3e-07 Score=65.18 Aligned_cols=59 Identities=24% Similarity=0.446 Sum_probs=50.0 Q ss_pred CCCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCC--CHHHHHHCCCCCCCCCEEEEEECCCC Q ss_conf 32000245675565300-14566288887830454--00111110146788631699965873 Q gi|254780773|r 119 KPVVSNVSPASPAAIAG-VKKGDCIISLDGITVSA--FEEVAPYVRENPLHEISLVLYREHVG 178 (349) Q Consensus 119 ~p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s--~~dl~~~i~~~~g~~v~i~v~R~~~~ 178 (349) ..+|..+.|+|||+++| |++||+|++|||+++.+ .+|..+.+++. .+.+++++.|+... T Consensus 31 ~~~V~~i~~~g~A~~~g~L~~GD~Il~INg~~v~~~~~~ev~~ll~~~-~~~v~L~v~r~~~~ 92 (98) T 2opg_A 31 AIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQT-PQRVRLTLYRDEAP 92 (98) T ss_dssp SEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTC-CSEEEEEEEECSSC T ss_pred CEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEEECCCC T ss_conf 999999778997998299999999999999999899899999999759-98699999818999 No 93 >1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A Probab=98.26 E-value=6.6e-07 Score=65.84 Aligned_cols=61 Identities=26% Similarity=0.424 Sum_probs=51.9 Q ss_pred CCCCCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCC--CHHHHHHCCCC-CCCCCEEEEEECCC Q ss_conf 3332000245675565300-14566288887830454--00111110146-78863169996587 Q gi|254780773|r 117 VMKPVVSNVSPASPAAIAG-VKKGDCIISLDGITVSA--FEEVAPYVREN-PLHEISLVLYREHV 177 (349) Q Consensus 117 ~~~p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s--~~dl~~~i~~~-~g~~v~i~v~R~~~ 177 (349) ....+|..|.|+|||+++| |++||+|++|||+++.. .+|+.+.++.. ++..+++++.|... T Consensus 64 ~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~~~v~L~v~R~~p 128 (131) T 1wfg_A 64 RLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRSGP 128 (131) T ss_dssp CEEEEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTCCHHHHHHHHHHTSSSSEEEEEEEEECS T ss_pred CCCEEEEEECCCCHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHHCCCCCEEEEEEEECCC T ss_conf 87879999899998998399777999999999997899899999999828999989999982798 No 94 >2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Probab=98.26 E-value=7.2e-07 Score=65.58 Aligned_cols=58 Identities=26% Similarity=0.409 Sum_probs=49.8 Q ss_pred CCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCC--CHHHHHHCCCCCCCCCEEEEEECCCC Q ss_conf 2000245675565300-14566288887830454--00111110146788631699965873 Q gi|254780773|r 120 PVVSNVSPASPAAIAG-VKKGDCIISLDGITVSA--FEEVAPYVRENPLHEISLVLYREHVG 178 (349) Q Consensus 120 p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s--~~dl~~~i~~~~g~~v~i~v~R~~~~ 178 (349) -+|..|.++|||+++| |++||+|++|||+.+.+ .+|..+.+++. ++.+++++.|.... T Consensus 48 i~I~~i~~gs~A~~~g~L~~GD~Il~VNg~~v~~~~~~e~v~~lr~~-~~~v~L~v~r~~~~ 108 (129) T 2dmz_A 48 IYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRNA-GQVVHLTLVRRKTS 108 (129) T ss_dssp EEEEEECTTSHHHHHTCCCSSCBEEEETTBCCTTCCHHHHHHHHHHC-CSSEEEEEEEESSS T ss_pred EEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEEECCCC T ss_conf 89999789996897399998999999999998899899999999738-99599999968988 No 95 >2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Probab=98.26 E-value=6e-07 Score=66.17 Aligned_cols=62 Identities=26% Similarity=0.456 Sum_probs=51.4 Q ss_pred CCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCC--CCHHHHHHCCCCCCCCCEEEEEECCCCEEEE Q ss_conf 2000245675565300-1456628888783045--4001111101467886316999658731310 Q gi|254780773|r 120 PVVSNVSPASPAAIAG-VKKGDCIISLDGITVS--AFEEVAPYVRENPLHEISLVLYREHVGVLHL 182 (349) Q Consensus 120 p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~--s~~dl~~~i~~~~g~~v~i~v~R~~~~~~~~ 182 (349) -+|.+|.++|||+.+| |++||+|++|||..+. +.+|+.+.+++. ++++.+++.|+....... T Consensus 40 i~V~~v~~~g~A~~~g~L~~GD~Il~INg~~v~~~~~~~v~~llk~~-~~~v~l~v~r~~~~~~~~ 104 (111) T 2dlu_A 40 VVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNC-GNSVRMLVARDPAGDISV 104 (111) T ss_dssp BEEEEECTTSSHHHHTCCCSSCEEEEESSCCCTTSCHHHHHHHHHHH-CSEEEEEEEESCTTCCCC T ss_pred EEEEEEECCCCHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEEECCCCCCCC T ss_conf 89999937982898699868999999999997899899999999759-985999999799776764 No 96 >3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 2ka9_A Probab=98.25 E-value=9.7e-07 Score=64.71 Aligned_cols=58 Identities=14% Similarity=0.260 Sum_probs=50.1 Q ss_pred CCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCCC Q ss_conf 2000245675565300-145662888878304540--0111110146788631699965873 Q gi|254780773|r 120 PVVSNVSPASPAAIAG-VKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHVG 178 (349) Q Consensus 120 p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~~ 178 (349) .+|.+|.++|||+++| |++||+|++|||+++.++ +|..+.++..+ +.+.+++.|.+.. T Consensus 132 v~V~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~lk~~~-~~v~L~V~R~~~~ 192 (196) T 3gsl_A 132 IYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTY-DVVYLKVAKPSNA 192 (196) T ss_dssp EEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCBHHHHHHHHHSCC-EEEEEEEEEESCC T ss_pred EEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEECCCCC T ss_conf 299998279958976999989999999999988999999999997599-8699999869987 No 97 >3b76_A E3 ubiquitin-protein ligase LNX; PDZ, peptide, bound ligand, domain, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.75A {Homo sapiens} Probab=98.25 E-value=5.9e-07 Score=66.20 Aligned_cols=57 Identities=21% Similarity=0.361 Sum_probs=48.6 Q ss_pred CCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCC--CHHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 2000245675565300-14566288887830454--0011111014678863169996587 Q gi|254780773|r 120 PVVSNVSPASPAAIAG-VKKGDCIISLDGITVSA--FEEVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 120 p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s--~~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) ..|.+|.|+|||+++| |++||+|++|||+++.. .+++.+.+++. ++++++++.|..+ T Consensus 55 i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~eav~ll~~~-~~~v~L~V~r~~~ 114 (118) T 3b76_A 55 IYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRT-SSSIVLKALEVKE 114 (118) T ss_dssp EEEEEECTTSHHHHHCSSCTTCEEEEETTEEGGGSCHHHHHHHHHSC-CSEEEEEEEEEEE T ss_pred EEEEEECCCCHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEEECCC T ss_conf 89999899995786199888999999999998899899999999729-9909999998999 No 98 >1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Probab=98.25 E-value=6.6e-07 Score=65.84 Aligned_cols=58 Identities=21% Similarity=0.291 Sum_probs=49.0 Q ss_pred CCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 32000245675565300145662888878304540--011111014678863169996587 Q gi|254780773|r 119 KPVVSNVSPASPAAIAGVKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 119 ~p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) ..+|..|.++|||+++||++||+|++|||.++.++ ++....+++ +++.+++++.|+.. T Consensus 43 gi~V~~v~~gs~A~~~gL~~GD~Il~VNg~~v~~~~~~~~~~~l~~-~~~~v~l~v~~~~~ 102 (117) T 1uit_A 43 GIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQARLIIGQ-QCDTITILAQYNPH 102 (117) T ss_dssp CEEEEEECTTSHHHHHTCCTTCEECEETTEETTTCCHHHHHHHTTS-CCSEEEEEECCCSC T ss_pred CEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHC-CCCEEEEEEEECCC T ss_conf 9999998999968987999999999999999889999999999877-99849999999994 No 99 >1u3b_A Amyloid beta A4 precursor protein-binding, family A, member 1; X11S/mints, PDZ domain, scaffold protein, protein trafficking, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 2yt8_A Probab=98.25 E-value=6.2e-07 Score=66.05 Aligned_cols=44 Identities=20% Similarity=0.453 Sum_probs=26.2 Q ss_pred CCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCCCH--HHHHHCCCC Q ss_conf 2000245675565300-1456628888783045400--111110146 Q gi|254780773|r 120 PVVSNVSPASPAAIAG-VKKGDCIISLDGITVSAFE--EVAPYVREN 163 (349) Q Consensus 120 p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s~~--dl~~~i~~~ 163 (349) .+|.+|.|+|||+++| |++||+|++|||+++.+++ ++...++.. T Consensus 31 ~~V~~V~~~s~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~~~~~ 77 (185) T 1u3b_A 31 VIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGL 77 (185) T ss_dssp EEEEEECSSSHHHHHSSCCTTCEEEEETTEECTTSCHHHHHHHHHHT T ss_pred EEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHH T ss_conf 89999799997896289977879998899586898899999987740 No 100 >2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A Probab=98.25 E-value=8.2e-07 Score=65.20 Aligned_cols=61 Identities=28% Similarity=0.483 Sum_probs=51.3 Q ss_pred CCCCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCCC--HHHHHHCCCCC-CCCCEEEEEECCCC Q ss_conf 332000245675565300-145662888878304540--01111101467-88631699965873 Q gi|254780773|r 118 MKPVVSNVSPASPAAIAG-VKKGDCIISLDGITVSAF--EEVAPYVRENP-LHEISLVLYREHVG 178 (349) Q Consensus 118 ~~p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s~--~dl~~~i~~~~-g~~v~i~v~R~~~~ 178 (349) ...+|.+|.|+|||+++| |++||+|++|||+++.++ +|..+.+++.+ ...+++++.|.... T Consensus 39 ~~i~V~~v~~~g~A~~~G~l~~GD~Il~INg~~v~~~t~~e~~~ll~~~~~~~~v~l~v~r~~~~ 103 (111) T 2koj_A 39 APIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQEEA 103 (111) T ss_dssp SCEEEEEECSSSHHHHHCSSCTTCEEEEETTEECTTSCHHHHHHHHHHCCCSSEEEEEEEECCCC T ss_pred CCEEEEEECCCCHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHHCCCCCEEEEEEECCCCC T ss_conf 58899998999958971999999999999999988999999999998189999899999828989 No 101 >1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1 Probab=98.25 E-value=5.7e-07 Score=66.28 Aligned_cols=57 Identities=25% Similarity=0.369 Sum_probs=49.5 Q ss_pred CCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCC--CHHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 2000245675565300-14566288887830454--0011111014678863169996587 Q gi|254780773|r 120 PVVSNVSPASPAAIAG-VKKGDCIISLDGITVSA--FEEVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 120 p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s--~~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) ..|..|.|+|||+++| |++||+|++|||+++.+ .+|+.+.++..+ .++++++.|+.. T Consensus 42 i~V~~v~~gg~A~~~G~l~~GD~Il~INg~~v~~~s~~ev~~~i~~~~-~~v~l~v~r~~~ 101 (107) T 1wf8_A 42 IFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTK-GNVRFVIGREKP 101 (107) T ss_dssp EEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHHCC-SEEEEEEEEECC T ss_pred EEEEEECCCCHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEECCC T ss_conf 899997889828981999999999999999988998999999987699-859999997999 No 102 >2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus} Probab=98.24 E-value=1.1e-06 Score=64.33 Aligned_cols=57 Identities=19% Similarity=0.337 Sum_probs=49.3 Q ss_pred CCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 2000245675565300-145662888878304540--011111014678863169996587 Q gi|254780773|r 120 PVVSNVSPASPAAIAG-VKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 120 p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) ..|..|.|+|||+++| |++||+|++|||.++.++ ++..+.++..+ .++.+++.|... T Consensus 37 i~I~~v~~gg~A~~~g~l~~GD~Il~VNg~~v~~~~~~~vv~~l~~~~-~~v~L~v~r~~~ 96 (113) T 2g5m_B 37 IFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTK-GRVRFMIGRERP 96 (113) T ss_dssp EEEEECCTTSHHHHHTCSCTTCBEEEETTEECSSCCHHHHHHHHHHSC-SSCEEEEEECCC T ss_pred EEEEEEECCCCCCCCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEECCC T ss_conf 999998189751204898989999999999978997999999987699-859999996898 No 103 >2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genomics, structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A Probab=98.24 E-value=7.3e-07 Score=65.54 Aligned_cols=57 Identities=21% Similarity=0.428 Sum_probs=48.9 Q ss_pred CCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCC--CHHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 2000245675565300-14566288887830454--0011111014678863169996587 Q gi|254780773|r 120 PVVSNVSPASPAAIAG-VKKGDCIISLDGITVSA--FEEVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 120 p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s--~~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) .+|.+|.++|||+++| |++||+|++|||.++.+ .++..+.++.. +..+++++.|+.. T Consensus 36 i~I~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~~v~~~l~~~-~~~v~L~v~R~~~ 95 (102) T 2i1n_A 36 IFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEA-GPVVRLVVRRRQP 95 (102) T ss_dssp EEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHS-CSEEEEEEEEECC T ss_pred EEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEEECCC T ss_conf 89999778997997499999989999999998899899999999738-9969999996998 No 104 >2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A Probab=98.23 E-value=6.3e-07 Score=66.02 Aligned_cols=56 Identities=20% Similarity=0.326 Sum_probs=48.6 Q ss_pred CCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCC--CCHHHHHHCCCCCCCCCEEEEEECC Q ss_conf 2000245675565300-1456628888783045--4001111101467886316999658 Q gi|254780773|r 120 PVVSNVSPASPAAIAG-VKKGDCIISLDGITVS--AFEEVAPYVRENPLHEISLVLYREH 176 (349) Q Consensus 120 p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~--s~~dl~~~i~~~~g~~v~i~v~R~~ 176 (349) .+|.++.++|||+++| |++||+|++|||+++. +.+|+.+.+++.+ .++++++.|.. T Consensus 38 i~V~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~s~~ev~~llk~~~-~~v~L~I~p~~ 96 (97) T 2ejy_A 38 CTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETK-GMISLKVIPNQ 96 (97) T ss_dssp EEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSCSHHHHHHHHHCC-EEEEEEEECCC T ss_pred EEEEEECCCCHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CCEEEEEEECC T ss_conf 999998999989980998789999999999958999999999997699-96999999698 No 105 >1u37_A Amyloid beta A4 precursor protein-binding, family A, member 1; X11S/mints, PDZ domain, scaffold protein, protein trafficking, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1u38_A Probab=98.23 E-value=8.2e-07 Score=65.23 Aligned_cols=56 Identities=20% Similarity=0.417 Sum_probs=47.9 Q ss_pred CCCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCC--CHHHHHHCCCCC-CCCCEEEEEE Q ss_conf 32000245675565300-14566288887830454--001111101467-8863169996 Q gi|254780773|r 119 KPVVSNVSPASPAAIAG-VKKGDCIISLDGITVSA--FEEVAPYVRENP-LHEISLVLYR 174 (349) Q Consensus 119 ~p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s--~~dl~~~i~~~~-g~~v~i~v~R 174 (349) ..+|.+|.|+|||+++| |++||+|++|||+++.+ .+|..+.+++.+ +..+++++.| T Consensus 30 ~i~I~~v~~gs~A~~~G~l~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~~~v~L~v~R 89 (89) T 1u37_A 30 TVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRVKLNIVR 89 (89) T ss_dssp SCEEEEECTTSHHHHHTCCCSSCEEEEETTEECTTSCHHHHHHHHHTCSSSSEEEEEEEC T ss_pred CEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEEEEEC T ss_conf 999999899996796198999999999999998899899999999739999899999989 No 106 >1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Probab=98.23 E-value=7e-07 Score=65.68 Aligned_cols=56 Identities=23% Similarity=0.350 Sum_probs=47.1 Q ss_pred CCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 2000245675565300145662888878304540--011111014678863169996587 Q gi|254780773|r 120 PVVSNVSPASPAAIAGVKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 120 p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) .+|..|.++|||+++||++||+|++|||+++.++ ++..+.++..+ ++.+++.|.+. T Consensus 37 i~V~~v~~gs~A~~~gL~~GD~Il~VNg~~v~~~~~~~~~~llk~~~--~~~l~V~~~~~ 94 (101) T 1uez_A 37 IYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALKGSK--KLVLSVYSAGR 94 (101) T ss_dssp EEEEEECTTSHHHHHTCCSSCCEEEETTEECSSCCHHHHHHHSSSSS--SCCEEECCCCC T ss_pred EEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCC--CEEEEEEECCC T ss_conf 89999899995786699889999999999999998999999986799--79999998997 No 107 >2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} Probab=98.23 E-value=6.9e-07 Score=65.75 Aligned_cols=56 Identities=20% Similarity=0.355 Sum_probs=48.4 Q ss_pred CCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCC---CCHHHHHHCCCCCCCCCEEEEEECC Q ss_conf 2000245675565300-1456628888783045---4001111101467886316999658 Q gi|254780773|r 120 PVVSNVSPASPAAIAG-VKKGDCIISLDGITVS---AFEEVAPYVRENPLHEISLVLYREH 176 (349) Q Consensus 120 p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~---s~~dl~~~i~~~~g~~v~i~v~R~~ 176 (349) -.|.+|.++|||+++| |++||+|++|||+++. +.++..+.+++. ++++++++.|.. T Consensus 51 i~I~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~a~~~lk~~-~~~v~L~v~R~~ 110 (117) T 2o2t_A 51 IFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKA-KDTVQLVIARGS 110 (117) T ss_dssp EEECCCCTTSHHHHHCCCCTTCEEEEETTEECCTTSCHHHHHHHHHHC-CSEEEEEEESSC T ss_pred EEEEEECCCCCHHHHCCCCCCCEEEEECCEECCCCCCHHHHHHHHHCC-CCEEEEEEEECC T ss_conf 899997889828982999899999999999977798999999999739-995999998489 No 108 >1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Probab=98.23 E-value=6.7e-07 Score=65.83 Aligned_cols=55 Identities=22% Similarity=0.360 Sum_probs=46.4 Q ss_pred CCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECC Q ss_conf 2000245675565300145662888878304540--01111101467886316999658 Q gi|254780773|r 120 PVVSNVSPASPAAIAGVKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREH 176 (349) Q Consensus 120 p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~ 176 (349) .+|..|.++|||+++||++||+|++|||+++.+. ++..+.++.. .+++++|.|.. T Consensus 43 i~V~~V~~~s~A~~~GL~~GD~Il~VNg~~v~~~~~~ea~~llk~~--~~v~l~V~~~~ 99 (104) T 1wi2_A 43 IFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKTA--REISMRVRFFS 99 (104) T ss_dssp CEEEEECTTSHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHHHS--SSEEEEEECCC T ss_pred EEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC--CEEEEEEEECC T ss_conf 8999989999168689999999999999999999799999998669--93899999788 No 109 >1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1 Probab=98.22 E-value=6.1e-07 Score=66.11 Aligned_cols=53 Identities=23% Similarity=0.363 Sum_probs=44.7 Q ss_pred CCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEE Q ss_conf 2000245675565300145662888878304540--01111101467886316999 Q gi|254780773|r 120 PVVSNVSPASPAAIAGVKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLY 173 (349) Q Consensus 120 p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~ 173 (349) ..|.+|.|+|||+++||++||+|++|||+++.++ +++.+.++.. +.++++++. T Consensus 33 ~~I~~V~~gs~A~~~gL~~GD~Il~INg~~v~~~t~~~~~~~l~~~-~~~v~L~v~ 87 (90) T 1y7n_A 33 GIICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNA-VGEIHMKTM 87 (90) T ss_dssp TEEEEECTTSHHHHHTCCSSCEEEEETTEECTTSCHHHHHHHHHHC-CEEEEEEEE T ss_pred CEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEE T ss_conf 4997988999799879999999999999997999899999998759-997999997 No 110 >1u39_A Amyloid beta A4 precursor protein-binding, family A, member 1; X11S/mints, PDZ domain, scaffold protein, protein trafficking, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1 Probab=98.22 E-value=4.6e-07 Score=66.97 Aligned_cols=54 Identities=22% Similarity=0.339 Sum_probs=45.6 Q ss_pred CCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEE Q ss_conf 32000245675565300145662888878304540--01111101467886316999 Q gi|254780773|r 119 KPVVSNVSPASPAAIAGVKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLY 173 (349) Q Consensus 119 ~p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~ 173 (349) ...|.+|.++|||+++||++||+|++|||+++.++ +++.+.++..+ .++++++. T Consensus 23 ~~~V~~V~~gs~A~~~gL~~GD~Il~VNg~~v~~~s~~~~~~ll~~~~-~~v~l~v~ 78 (80) T 1u39_A 23 NGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAV-GEIHMKTM 78 (80) T ss_dssp TTEEEEECTTSTHHHHTCCTTEEECEETTEEGGGSCHHHHHHHHHTCC-EEEEEEEE T ss_pred CCEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEE T ss_conf 999999679998998699999999999999979997999999986698-98999997 No 111 >2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens} Probab=98.22 E-value=3.1e-07 Score=68.14 Aligned_cols=57 Identities=23% Similarity=0.464 Sum_probs=48.2 Q ss_pred CCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCC--CHHHHHHCCCCCCCCCEEEEEECC Q ss_conf 3200024567556530014566288887830454--001111101467886316999658 Q gi|254780773|r 119 KPVVSNVSPASPAAIAGVKKGDCIISLDGITVSA--FEEVAPYVRENPLHEISLVLYREH 176 (349) Q Consensus 119 ~p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s--~~dl~~~i~~~~g~~v~i~v~R~~ 176 (349) ...|..|.++|||+++||++||+|++|||+++.+ .+|.+..++.. +++++++|.|.. T Consensus 34 gi~V~~V~~gspA~~~GL~~GD~Il~INg~~v~~~t~~eav~llr~~-~~~v~L~V~r~~ 92 (216) T 2krg_A 34 GQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAG-GDETKLLVVDRE 92 (216) T ss_dssp SCBEEEECTTSHHHHHTCCTTCBCCEETTEECTTCCTHHHHHHHHHH-CSEEEEEECCHH T ss_pred CEEEEEECCCCHHHHCCCCCCCEEEEECCEEECCCCHHHHHHHHHCC-CCEEEEEEECCC T ss_conf 98999979999899839998999999799984899999999999759-996899998887 No 112 >2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A Probab=98.22 E-value=7.3e-07 Score=65.56 Aligned_cols=58 Identities=14% Similarity=0.237 Sum_probs=50.5 Q ss_pred CCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCC--CCHHHHHHCCCCCCCCCEEEEEECCCC Q ss_conf 2000245675565300-1456628888783045--400111110146788631699965873 Q gi|254780773|r 120 PVVSNVSPASPAAIAG-VKKGDCIISLDGITVS--AFEEVAPYVRENPLHEISLVLYREHVG 178 (349) Q Consensus 120 p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~--s~~dl~~~i~~~~g~~v~i~v~R~~~~ 178 (349) ..|.+|.|+|||+++| |++||+|++|||+++. +.+|+.+.++..+ .++++++.|+++. T Consensus 55 i~V~~V~~gg~A~~~G~L~~GD~Il~VNG~~v~~~t~~evv~llk~~~-~~v~l~V~r~~~~ 115 (120) T 2iwo_A 55 IFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNAS-GSIEMQVVAGGDV 115 (120) T ss_dssp EEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCBHHHHHHHHHHCC-SEEEEEEECCTTS T ss_pred EEEEEECCCCHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEECCCC T ss_conf 899998999978983899999999999999988998999999997289-9599999969988 No 113 >2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A Probab=98.22 E-value=1e-06 Score=64.48 Aligned_cols=58 Identities=31% Similarity=0.401 Sum_probs=47.3 Q ss_pred CCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 332000245675565300145662888878304540--011111014678863169996587 Q gi|254780773|r 118 MKPVVSNVSPASPAAIAGVKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 118 ~~p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) ...+|..|.++|||+.|||++||+|++|||+++.++ +++.+.++. +.++.+++.|... T Consensus 29 ~~~~V~~V~~~spA~~aGL~~GD~Il~VNg~~v~~~~~~~v~~ll~~--~~~~~l~v~~~~~ 88 (93) T 2dls_A 29 RIVLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSSHLEVVKLIKS--GAYVALTLLGSSS 88 (93) T ss_dssp SSCEEEEECSSSTTTTTTCCSSCEEEEETTEECSSSCHHHHHHHHTS--SSEEEEEEECCCC T ss_pred CCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHCC--CCEEEEEEEECCC T ss_conf 99899997899989986998899999999999899999999998738--9919999998998 No 114 >1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Probab=98.22 E-value=1.1e-06 Score=64.43 Aligned_cols=56 Identities=23% Similarity=0.354 Sum_probs=48.2 Q ss_pred CCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCC--CHHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 000245675565300-14566288887830454--0011111014678863169996587 Q gi|254780773|r 121 VVSNVSPASPAAIAG-VKKGDCIISLDGITVSA--FEEVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 121 ~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s--~~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) +|.+|.++|||+++| |++||+|++|||+++.. .+|..+.+++. ++++++++.|... T Consensus 44 ~V~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~eav~~l~~~-~~~v~l~v~r~~~ 102 (107) T 1uhp_A 44 FVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTA-KEPIVVQVLRRTS 102 (107) T ss_dssp EEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHHHHC-CSSEEEEEEECCS T ss_pred EEEEECCCCHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHHC-CCCEEEEEEECCC T ss_conf 9999899997898499999999999999998899899999999809-9929999997999 No 115 >1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Probab=98.21 E-value=9.1e-07 Score=64.91 Aligned_cols=57 Identities=18% Similarity=0.405 Sum_probs=49.2 Q ss_pred CCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCC--CHHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 2000245675565300-14566288887830454--0011111014678863169996587 Q gi|254780773|r 120 PVVSNVSPASPAAIAG-VKKGDCIISLDGITVSA--FEEVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 120 p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s--~~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) .+|..|.++|||+++| |++||+|++|||+++.. .+|+.+.+++.+ .++++++.|+.. T Consensus 51 i~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~t~~ev~~~i~~~~-~~v~L~v~r~~~ 110 (117) T 1ujd_A 51 AYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQS-GEAEICVRLDLN 110 (117) T ss_dssp EEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHSCCS-SCEEEEEESSCC T ss_pred EEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEECCC T ss_conf 899998999948984999999999999999978997999999998399-959999997999 No 116 >1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2 Probab=98.21 E-value=5.5e-07 Score=66.43 Aligned_cols=60 Identities=17% Similarity=0.276 Sum_probs=52.2 Q ss_pred CCCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCC--CCHHHHHHCCCCCCCCCEEEEEECCCC Q ss_conf 32000245675565300-1456628888783045--400111110146788631699965873 Q gi|254780773|r 119 KPVVSNVSPASPAAIAG-VKKGDCIISLDGITVS--AFEEVAPYVRENPLHEISLVLYREHVG 178 (349) Q Consensus 119 ~p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~--s~~dl~~~i~~~~g~~v~i~v~R~~~~ 178 (349) ..+|..|.|+|||+++| |++||+|++|||+++. +.+|+.+.++..+...+.+++.|.... T Consensus 58 ~i~V~~V~~gg~A~~~G~l~~GD~Il~INg~~v~~~t~~e~v~~lr~~~~~~v~L~v~r~~~~ 120 (130) T 1i16_A 58 PLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSLQ 120 (130) T ss_dssp CCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSCSSEEEEEEEEESSC T ss_pred CEEEEEECCCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCEEEEEEECCCCC T ss_conf 879999899981798289987899999999998899799999999718997599999748988 No 117 >1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Probab=98.20 E-value=1.1e-06 Score=64.42 Aligned_cols=57 Identities=21% Similarity=0.450 Sum_probs=49.0 Q ss_pred CCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCC--CHHHHHHCCCCCCCCCEEEEEECCCC Q ss_conf 000245675565300-14566288887830454--00111110146788631699965873 Q gi|254780773|r 121 VVSNVSPASPAAIAG-VKKGDCIISLDGITVSA--FEEVAPYVRENPLHEISLVLYREHVG 178 (349) Q Consensus 121 ~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s--~~dl~~~i~~~~g~~v~i~v~R~~~~ 178 (349) +|..|.++|||+++| |++||+|++|||+++.+ .+|..+.++.. ++++.+++.|.+.+ T Consensus 39 ~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~~~~ev~~~lk~~-~~~v~l~v~r~~~~ 98 (110) T 1um1_A 39 YIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHG-GKKMRFLVAKSDVE 98 (110) T ss_dssp EEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTC-CSEEEEEEECCCHH T ss_pred EEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEEECCCC T ss_conf 9999899997998199999999999999997899899999999829-99699999939987 No 118 >1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1 Probab=98.20 E-value=1.2e-06 Score=64.05 Aligned_cols=57 Identities=14% Similarity=0.321 Sum_probs=44.6 Q ss_pred CCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCC--CHHHHHHCCCCCCCCCEEEEEECC Q ss_conf 2000245675565300-14566288887830454--001111101467886316999658 Q gi|254780773|r 120 PVVSNVSPASPAAIAG-VKKGDCIISLDGITVSA--FEEVAPYVRENPLHEISLVLYREH 176 (349) Q Consensus 120 p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s--~~dl~~~i~~~~g~~v~i~v~R~~ 176 (349) -+|.+|.++|||+++| |++||+|++|||.++.+ .+|..+.+++.++......+.|.. T Consensus 35 i~V~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~s~~ea~~~l~~~~~~~~l~l~~r~~ 94 (127) T 1b8q_A 35 VIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGP 94 (127) T ss_dssp EEECCCSSSSSHHHHSSCCTTTCCCEETTEECSSSCHHHHHHHHHSCCSSCEEEEEECCC T ss_pred EEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCEEEEEEEECC T ss_conf 999997999989983999999899998999988996999999997299976999999399 No 119 >1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein/oxidoreductase complex; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A Probab=98.20 E-value=9.7e-07 Score=64.70 Aligned_cols=56 Identities=20% Similarity=0.249 Sum_probs=47.5 Q ss_pred CCCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEEC Q ss_conf 32000245675565300-145662888878304540--0111110146788631699965 Q gi|254780773|r 119 KPVVSNVSPASPAAIAG-VKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYRE 175 (349) Q Consensus 119 ~p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~ 175 (349) ..+|.+|.|+|||+++| |++||+|++|||+++.+. +|..+.+++. ++++++++.|- T Consensus 31 ~i~V~~v~~g~~A~~~G~L~~GD~Il~VNg~~v~~~t~~~~~~~l~~~-~~~v~L~v~~~ 89 (90) T 1qav_A 31 PILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKT-GKEVVLEVKYM 89 (90) T ss_dssp EEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTC-CSEEEEEEEEC T ss_pred CEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEEEE T ss_conf 999999999997998299998999999999999999899999999808-99599999992 No 120 >2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens} Probab=98.19 E-value=9.9e-07 Score=64.65 Aligned_cols=58 Identities=24% Similarity=0.299 Sum_probs=49.6 Q ss_pred CCCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 32000245675565300-145662888878304540--011111014678863169996587 Q gi|254780773|r 119 KPVVSNVSPASPAAIAG-VKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 119 ~p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) ..+|.+|.++|||+++| |++||+|++|||+++..+ ++..+.+++.+ +++++++.|... T Consensus 30 ~i~V~~v~~gg~A~~~g~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~-~~v~l~V~R~~~ 90 (92) T 2qg1_A 30 GVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSL-GTVTLEVGRIST 90 (92) T ss_dssp SCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC-SEEEEEEECCCC T ss_pred CEEEEEECCCCHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEECCCC T ss_conf 9999998999978984999999999999999978999999999997799-969999990687 No 121 >2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens} Probab=98.18 E-value=4.2e-07 Score=67.21 Aligned_cols=53 Identities=21% Similarity=0.491 Sum_probs=45.0 Q ss_pred CCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEE Q ss_conf 32000245675565300145662888878304540--0111110146788631699 Q gi|254780773|r 119 KPVVSNVSPASPAAIAGVKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVL 172 (349) Q Consensus 119 ~p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v 172 (349) ..+|..|.++|||+++||++||+|++|||+++.++ +++.+.++.+ ++++++++ T Consensus 49 ~~~V~~V~~gs~A~~~gl~~GD~Il~VNg~~v~~~~~~~~~~~i~~~-~~~v~L~v 103 (104) T 2z17_A 49 FTLICKIQEDSPAHCAGLQAGDVLANINGVSTEGFTYKQVVDLIRSS-GNLLTIET 103 (104) T ss_dssp CEEEEEECTTSHHHHHTCCTTCBCCEETTEECTTCCHHHHHHHHHHT-TTEEEEEC T ss_pred CEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEE T ss_conf 86999989999899868988999999999998999999999999769-89799998 No 122 >1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A Probab=98.18 E-value=8.5e-07 Score=65.10 Aligned_cols=53 Identities=15% Similarity=0.267 Sum_probs=44.7 Q ss_pred CCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEE Q ss_conf 000245675565300145662888878304540--011111014678863169996 Q gi|254780773|r 121 VVSNVSPASPAAIAGVKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYR 174 (349) Q Consensus 121 ~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R 174 (349) .|.+|.++|||+++||++||+|++|||+++.++ +++.+.+++. ++++++++.. T Consensus 26 ~I~~V~~gs~A~~~Gl~~GD~Il~VNg~~v~~~t~~~~~~ll~~~-~~~v~L~V~p 80 (82) T 1r6j_A 26 KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTS-GTVVTITIMP 80 (82) T ss_dssp EEEEECTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHHHS-CSEEEEEEEE T ss_pred EEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEEC T ss_conf 998988999899839998999999999997899899999999729-9979999974 No 123 >2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic} Probab=98.17 E-value=8.2e-07 Score=65.20 Aligned_cols=56 Identities=27% Similarity=0.439 Sum_probs=48.4 Q ss_pred CCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCC--CHHHHHHCCCCCCCCCEEEEEECC Q ss_conf 2000245675565300-14566288887830454--001111101467886316999658 Q gi|254780773|r 120 PVVSNVSPASPAAIAG-VKKGDCIISLDGITVSA--FEEVAPYVRENPLHEISLVLYREH 176 (349) Q Consensus 120 p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s--~~dl~~~i~~~~g~~v~i~v~R~~ 176 (349) .+|.+|.++|||+++| |++||+|++|||+++.+ .++..+.++. ++.++++++.|.. T Consensus 46 i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~lk~-~~~~v~L~v~R~~ 104 (108) T 2jre_A 46 IYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLRN-AGNPVRLLLIRRL 104 (108) T ss_dssp CEEEEECTTSHHHHHSSCCSSEEEEEETTEECTTSCHHHHHHHHHH-HCSEEEEEEEECC T ss_pred EEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHC-CCCEEEEEEEECC T ss_conf 8999989999689629999999999999999889989999999975-9984899999478 No 124 >2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Probab=98.17 E-value=1.5e-06 Score=63.41 Aligned_cols=58 Identities=21% Similarity=0.358 Sum_probs=49.5 Q ss_pred CCCCCCCCCCCHHHH--HHCCCCCEEEEECCCCCC--CCHHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 320002456755653--001456628888783045--40011111014678863169996587 Q gi|254780773|r 119 KPVVSNVSPASPAAI--AGVKKGDCIISLDGITVS--AFEEVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 119 ~p~I~~V~~~spA~~--AGL~~GD~Il~InG~~V~--s~~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) ..+|.+|.|++||++ ++|++||+|++|||+++. +.++..+.+++. ++.++++|.|+.. T Consensus 45 ~v~V~~v~~~g~A~~~~g~L~~GD~Il~VNg~~v~~~t~~~~~~ll~~~-~~~v~L~V~r~~~ 106 (118) T 2yub_A 45 TVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAIKQT-SQTLQLLIEHDPV 106 (118) T ss_dssp EEEEEECCTTTSCTTHHHHCCTTCCEEEESSSBTTTSCHHHHHHHHHCC-SSCEEEEEEECSS T ss_pred CEEEEEECCCCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEEECCC T ss_conf 9899998899809788699999999999899988999899999999748-9969999997997 No 125 >1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A Probab=98.15 E-value=1.5e-06 Score=63.39 Aligned_cols=57 Identities=14% Similarity=0.269 Sum_probs=49.7 Q ss_pred CCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 2000245675565300-145662888878304540--011111014678863169996587 Q gi|254780773|r 120 PVVSNVSPASPAAIAG-VKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 120 p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) .+|.+|.++|||+++| |++||+|++|||+++.+. +|..+.+++. ++++++++.|... T Consensus 32 v~V~~i~~gg~A~~~G~l~~GD~Il~VNg~~v~~~~~~ev~~llk~~-~~~v~L~v~r~~~ 91 (97) T 1n7e_A 32 IIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMA-GETVTLKIKKQTD 91 (97) T ss_dssp CEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTC-CSEEEEEEECCCC T ss_pred EEEEEECCCCCHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEEECCC T ss_conf 99999889984431499998999999999997899899999999759-9859999988999 No 126 >1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1 Probab=98.15 E-value=1.1e-06 Score=64.45 Aligned_cols=57 Identities=21% Similarity=0.327 Sum_probs=46.7 Q ss_pred CCCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCC--CHHHHHHCCCCCCCCCEEEEEECC Q ss_conf 32000245675565300-14566288887830454--001111101467886316999658 Q gi|254780773|r 119 KPVVSNVSPASPAAIAG-VKKGDCIISLDGITVSA--FEEVAPYVRENPLHEISLVLYREH 176 (349) Q Consensus 119 ~p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s--~~dl~~~i~~~~g~~v~i~v~R~~ 176 (349) ..+|.+|.++|||+++| |++||+|++|||+++.+ .+++.+.++..+ .++++++.... T Consensus 26 ~~~I~~v~~gg~A~~~G~l~~GD~Il~INg~~v~~~~~~ev~~ll~~~~-~~v~L~v~ps~ 85 (88) T 1kwa_A 26 HCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMR-GSITFKIVPSY 85 (88) T ss_dssp GEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCC-EEEEEEEECCC T ss_pred CEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CCEEEEEEECC T ss_conf 8999997899979983999889999999999977998999999997699-96999998477 No 127 >2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=98.15 E-value=2.3e-06 Score=62.12 Aligned_cols=58 Identities=17% Similarity=0.373 Sum_probs=48.5 Q ss_pred CCCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCC-CHHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 32000245675565300-14566288887830454-0011111014678863169996587 Q gi|254780773|r 119 KPVVSNVSPASPAAIAG-VKKGDCIISLDGITVSA-FEEVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 119 ~p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s-~~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) ..+|..|.+++||+.+| |++||+|++|||+++.. .+|..+.+++. ++++++++.|... T Consensus 36 ~~~V~~v~~~g~A~~~g~L~~GD~Il~VNg~~v~~~~~e~v~lik~~-~~~v~L~V~R~~~ 95 (100) T 2edp_A 36 PLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGSRQEALILIKGS-FRILKLIVRRRNS 95 (100) T ss_dssp EEEECCCCTTSHHHHHTSCCTTCEEEEETTEECCSCSHHHHHHHHTC-CSSCEEEEEECCC T ss_pred CEEEEEECCCCCHHHHCCCCCCCEEEEECCEECCCCHHHHHHHHHHC-CCEEEEEEECCCC T ss_conf 88999931898879839998899999999998427899999999808-9929999970998 No 128 >2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Probab=98.15 E-value=1.2e-06 Score=64.03 Aligned_cols=57 Identities=18% Similarity=0.313 Sum_probs=48.9 Q ss_pred CCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 2000245675565300-145662888878304540--011111014678863169996587 Q gi|254780773|r 120 PVVSNVSPASPAAIAG-VKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 120 p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) -+|.+|.++|||+++| |++||+|++|||+.+.+. +|+.+.+++ .+++++++|.|... T Consensus 52 v~I~~v~~~s~A~~~g~l~~GD~Il~VNg~~v~~~t~~evv~~ir~-~~~~v~l~V~~~~~ 111 (117) T 2ehr_A 52 IFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKN-AGNPVVFIVQSLSS 111 (117) T ss_dssp EEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTCCHHHHHHHHHT-SCSSEEEEECCBSC T ss_pred EEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHC-CCCEEEEEEEECCC T ss_conf 8999989999799819998899999999999779989999999986-99849999998999 No 129 >2q9v_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; Cys Ser mutant, structural genomics consortium, SGC, transferase; 2.00A {Homo sapiens} Probab=98.15 E-value=5.8e-07 Score=66.26 Aligned_cols=56 Identities=21% Similarity=0.389 Sum_probs=47.9 Q ss_pred CCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCCC--HHHHHHCCCCC-CCCCEEEEEEC Q ss_conf 2000245675565300-145662888878304540--01111101467-88631699965 Q gi|254780773|r 120 PVVSNVSPASPAAIAG-VKKGDCIISLDGITVSAF--EEVAPYVRENP-LHEISLVLYRE 175 (349) Q Consensus 120 p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s~--~dl~~~i~~~~-g~~v~i~v~R~ 175 (349) .+|.+|.|+|||+++| |++||+|++|||+++.+. +|..+.+++.+ ..++++++.|. T Consensus 29 v~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~t~~ev~~~l~~~~~~~~v~L~V~r~ 88 (90) T 2q9v_A 29 IYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVNLTVRQT 88 (90) T ss_dssp EEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEEC T ss_pred EEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHCCCCCEEEEEEEEC T ss_conf 899999899989975997899999999999989998999999998589998899999952 No 130 >1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 Probab=98.14 E-value=4.2e-07 Score=67.20 Aligned_cols=56 Identities=16% Similarity=0.303 Sum_probs=48.0 Q ss_pred CCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 000245675565300-145662888878304540--011111014678863169996587 Q gi|254780773|r 121 VVSNVSPASPAAIAG-VKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 121 ~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) +|..|.|+|||+++| |++||+|++|||+++.++ +|..+.+++. ++.+++++.|... T Consensus 47 ~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~t~~e~v~~l~~~-~~~v~L~V~r~~~ 105 (111) T 1uju_A 47 FISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSV-GDTLTVLVCDGFE 105 (111) T ss_dssp EEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHHHSSC-SSEEEECCCCCCC T ss_pred EEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEEECCC T ss_conf 9999899996897599998989999999998899899999999728-9949999998999 No 131 >2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structural genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A Probab=98.14 E-value=1.2e-06 Score=63.97 Aligned_cols=58 Identities=26% Similarity=0.352 Sum_probs=48.2 Q ss_pred CCCCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCC--CCHHHHHHCCCCCCCCCEEEEEECC Q ss_conf 332000245675565300-1456628888783045--4001111101467886316999658 Q gi|254780773|r 118 MKPVVSNVSPASPAAIAG-VKKGDCIISLDGITVS--AFEEVAPYVRENPLHEISLVLYREH 176 (349) Q Consensus 118 ~~p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~--s~~dl~~~i~~~~g~~v~i~v~R~~ 176 (349) ...+|.+|.++|||+++| |++||+|++|||+++. +.+|+.+.++..+ .++++++.|.. T Consensus 50 ~~i~V~~v~~gg~A~~~g~L~~GD~Il~VNg~~v~~~s~~ev~~llk~~~-~~v~L~~~r~~ 110 (114) T 2gzv_A 50 PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK-GEVTIHYNKLQ 110 (114) T ss_dssp CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC-SEEEEEEECCC T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CCEEEEEEEEE T ss_conf 99899998899989986999999999999999978997999999997599-80999999532 No 132 >1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 Probab=98.14 E-value=1.3e-06 Score=63.72 Aligned_cols=56 Identities=21% Similarity=0.447 Sum_probs=48.2 Q ss_pred CCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCC--CHHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 000245675565300-14566288887830454--0011111014678863169996587 Q gi|254780773|r 121 VVSNVSPASPAAIAG-VKKGDCIISLDGITVSA--FEEVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 121 ~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s--~~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) .|..|.++|||+++| |++||+|++|||+++.+ .+|..+.+++. ++.+.+++.|+.. T Consensus 45 ~V~~v~~gg~A~~~G~l~~GD~Il~INg~~v~~~~~~~~v~~lk~~-~~~v~L~v~R~~~ 103 (108) T 1q7x_A 45 YVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNT-GQVVHLLLEKGQS 103 (108) T ss_dssp BEEEECTTSTHHHHTCCCSSCEEEEETTEECBSCTTSHHHHHHHHT-TSEEEEEEECCCC T ss_pred EEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEEECCC T ss_conf 9999899996997399989999999999998899899999998769-9869999998989 No 133 >2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Probab=98.14 E-value=2.2e-06 Score=62.26 Aligned_cols=58 Identities=28% Similarity=0.464 Sum_probs=49.1 Q ss_pred CCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCCC Q ss_conf 2000245675565300-145662888878304540--0111110146788631699965873 Q gi|254780773|r 120 PVVSNVSPASPAAIAG-VKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHVG 178 (349) Q Consensus 120 p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~~ 178 (349) .+|..|.++|||+++| |++||+|++|||+++..+ +|..+.+++. .+.+++++.|+... T Consensus 45 i~V~~I~~gs~A~~~G~L~~GD~Il~INg~~v~~~t~~ea~~~ik~~-~~~v~L~V~r~~~~ 105 (116) T 2dm8_A 45 IVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQT-PQKVRLVVYRDEAH 105 (116) T ss_dssp EECCCCCSSSHHHHHTCCCTTCEEEEETTEECSSSCHHHHHHHHHTC-CSEEEEEEECCSSC T ss_pred EEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEEECCCC T ss_conf 89999899997998299999999999999998899899999999749-98599999968866 No 134 >2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A Probab=98.13 E-value=1.3e-06 Score=63.83 Aligned_cols=57 Identities=12% Similarity=0.243 Sum_probs=48.8 Q ss_pred CCCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECC Q ss_conf 32000245675565300-145662888878304540--01111101467886316999658 Q gi|254780773|r 119 KPVVSNVSPASPAAIAG-VKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREH 176 (349) Q Consensus 119 ~p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~ 176 (349) ...|.+|.++|||+++| |++||+|++|||+++.++ +++.+.++..++ ++++++.|.. T Consensus 32 gi~V~~v~~~~~A~~~g~L~~GD~Il~INg~~v~~~~~~~v~~ll~~~~~-~v~L~v~R~~ 91 (96) T 2qkv_A 32 GCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKGANG-KVSMEVTRPK 91 (96) T ss_dssp SEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCSS-EEEEEEECCC T ss_pred CEEEEEECCCCHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCC-EEEEEEECCC T ss_conf 88999988999899809998899999999999779989999999977998-5999998389 No 135 >1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1 Probab=98.13 E-value=1.8e-06 Score=62.93 Aligned_cols=60 Identities=30% Similarity=0.302 Sum_probs=49.9 Q ss_pred CCCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCC--CHHHHHHCCC---CCCCCCEEEEEECCCC Q ss_conf 32000245675565300-14566288887830454--0011111014---6788631699965873 Q gi|254780773|r 119 KPVVSNVSPASPAAIAG-VKKGDCIISLDGITVSA--FEEVAPYVRE---NPLHEISLVLYREHVG 178 (349) Q Consensus 119 ~p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s--~~dl~~~i~~---~~g~~v~i~v~R~~~~ 178 (349) ..+|.+|.++|||+++| |++||+|++|||+++.+ .+|..+.+++ +.+..+++++.|.... T Consensus 44 ~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~l~~a~~~~~~~v~l~v~r~pp~ 109 (118) T 1v6b_A 44 KVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCPPK 109 (118) T ss_dssp SEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCSEEEEEEECCCSC T ss_pred CEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCC T ss_conf 999999899998998099987999999999998899799999999864347999899999838988 No 136 >2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=98.12 E-value=1.3e-06 Score=63.76 Aligned_cols=57 Identities=23% Similarity=0.376 Sum_probs=49.2 Q ss_pred CCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 2000245675565300-145662888878304540--011111014678863169996587 Q gi|254780773|r 120 PVVSNVSPASPAAIAG-VKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 120 p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) .+|..|.++|||+++| |++||+|++|||+++.++ +++.+.+++.+ .++++++.|+.. T Consensus 49 i~V~~V~~gg~A~~~g~l~~GD~Il~VNg~~v~~~~~~e~~~~ik~~~-~~v~L~v~r~~~ 108 (120) T 2eno_A 49 IYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAG-YAVSLRVQHRLQ 108 (120) T ss_dssp EEEEEECSSSHHHHSCCSCTTCEEEEETTEECCSCCHHHHHHHHHHHC-SEEEEEEEEEEE T ss_pred EEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEECCC T ss_conf 799998899969973999999999999999988997999999997389-859999997887 No 137 >2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A Probab=98.11 E-value=1.6e-06 Score=63.25 Aligned_cols=57 Identities=23% Similarity=0.322 Sum_probs=49.7 Q ss_pred CCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCCC--HHHHHHCCCC-CCCCCEEEEEECC Q ss_conf 2000245675565300-145662888878304540--0111110146-7886316999658 Q gi|254780773|r 120 PVVSNVSPASPAAIAG-VKKGDCIISLDGITVSAF--EEVAPYVREN-PLHEISLVLYREH 176 (349) Q Consensus 120 p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s~--~dl~~~i~~~-~g~~v~i~v~R~~ 176 (349) .+|.+|.++|||+++| |++||+|++|||+++..+ ++.++.++.. .+..+++++.|.. T Consensus 45 i~V~~v~~gg~A~~~g~l~~GD~Il~INg~~v~~~t~~eav~~lr~~~~g~~v~L~v~R~~ 105 (129) T 2kpk_A 45 LQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRGY 105 (129) T ss_dssp EEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTEEEEEEEEECS T ss_pred EEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEEEEEECC T ss_conf 8999966998699858998898999999998789989999999967999998999999499 No 138 >3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A Probab=98.11 E-value=1.9e-06 Score=62.75 Aligned_cols=52 Identities=19% Similarity=0.354 Sum_probs=41.6 Q ss_pred CCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEE Q ss_conf 2000245675565300145662888878304540--011111014678863169996 Q gi|254780773|r 120 PVVSNVSPASPAAIAGVKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYR 174 (349) Q Consensus 120 p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R 174 (349) -+|..|.++|||+++||++||+|++|||+++.+. +++...+++. ...+++.+ T Consensus 37 i~V~~V~~gs~A~~~GL~~GD~Il~INg~~v~~~~~~~~~~ll~~~---~~~Ltv~~ 90 (94) T 3kzd_A 37 LYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQP---SLGLLVRT 90 (94) T ss_dssp EEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHHSS---EEEEEEEE T ss_pred EEEEEECCCCHHHHHCCCCCCEEEEECCEECCCCCHHHHHHHHHCC---CCEEEEEE T ss_conf 8999989999889818847899999999998999999999998669---97799997 No 139 >2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Probab=98.10 E-value=1.4e-06 Score=63.55 Aligned_cols=60 Identities=20% Similarity=0.424 Sum_probs=50.7 Q ss_pred CCCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCC--CHHHHHHCCCCCCCCCEEEEEECCCCE Q ss_conf 32000245675565300-14566288887830454--001111101467886316999658731 Q gi|254780773|r 119 KPVVSNVSPASPAAIAG-VKKGDCIISLDGITVSA--FEEVAPYVRENPLHEISLVLYREHVGV 179 (349) Q Consensus 119 ~p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s--~~dl~~~i~~~~g~~v~i~v~R~~~~~ 179 (349) ...|..|.|+|||+++| |++||+|++|||..+.. .+|+.+.++.. ++++++++.|+.... T Consensus 52 ~i~V~~v~~~s~A~~~g~l~~GD~Il~INg~~v~~~~~~~v~~~lk~~-~~~v~L~v~r~~~~~ 114 (124) T 2daz_A 52 SIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTA-PSKVKLVFIRNEDAV 114 (124) T ss_dssp CEEEEEECTTSHHHHHTCCCTTCEECEESSCBCTTSCHHHHHHHHHHS-CSEEEEEEEECTTHH T ss_pred CEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEEECCCCC T ss_conf 989999899998998499975068999999998899899999999759-986999999799887 No 140 >2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens} Probab=98.10 E-value=1.9e-06 Score=62.62 Aligned_cols=56 Identities=21% Similarity=0.439 Sum_probs=47.5 Q ss_pred CCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECC Q ss_conf 2000245675565300-145662888878304540--01111101467886316999658 Q gi|254780773|r 120 PVVSNVSPASPAAIAG-VKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREH 176 (349) Q Consensus 120 p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~ 176 (349) .+|..|.++|||+++| |++||+|++|||+++.++ +|+.+.++++ +.++++++..-. T Consensus 37 i~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~~~~~e~v~llk~~-~~~v~l~V~~~~ 95 (103) T 2dc2_A 37 ILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQ-RGEIEFEVVYVA 95 (103) T ss_dssp EEEEEECTTSHHHHHTCCCSSEEEEEETTEESTTSCHHHHHHHHHHC-CSEEEEEEEECC T ss_pred EEEEEECCCCCHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCCEEEEEEECC T ss_conf 99999889973774399988999999999997899899999999718-990999999877 No 141 >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* Probab=98.09 E-value=4.5e-06 Score=60.08 Aligned_cols=62 Identities=21% Similarity=0.131 Sum_probs=52.7 Q ss_pred CCCCCHHHHHHCCC-CCEEEEECCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCCEEEECCCC Q ss_conf 45675565300145-662888878304540011111014678863169996587313101121 Q gi|254780773|r 125 VSPASPAAIAGVKK-GDCIISLDGITVSAFEEVAPYVRENPLHEISLVLYREHVGVLHLKVMP 186 (349) Q Consensus 125 V~~~spA~~AGL~~-GD~Il~InG~~V~s~~dl~~~i~~~~g~~v~i~v~R~~~~~~~~~v~p 186 (349) +.+.|||++||+++ ||+|++|||+++.+-.+....++..+++++++++.|.+.+..++++.+ T Consensus 763 ~~~~sPa~~~g~~~~Gd~i~~ing~~~~~~~~~~~~l~~~~g~~v~l~~~~~~~~~~~~~~~~ 825 (1045) T 1k32_A 763 EGEKSPIFEYGIDPTGYLIEDIDGETVGAGSNIYRVLSEKAGTSARIRLSGKGGDKRDLMIDI 825 (1045) T ss_dssp TTCBCGGGGGTCCCTTCEEEEETTEECBTTBCHHHHHHTTTTSEEEEEEECSSSCEEEEEEEC T ss_pred CCCCCHHHHCCCCCCCCEEEEECCEECCCCCCHHHHHCCCCCCEEEEEEECCCCCCEEEEEEE T ss_conf 556990787688868989999899988576547787367789779999987999740599962 No 142 >2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=98.09 E-value=1.3e-06 Score=63.91 Aligned_cols=56 Identities=20% Similarity=0.372 Sum_probs=48.4 Q ss_pred CCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECC Q ss_conf 2000245675565300-145662888878304540--01111101467886316999658 Q gi|254780773|r 120 PVVSNVSPASPAAIAG-VKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREH 176 (349) Q Consensus 120 p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~ 176 (349) -+|..|.++|||+++| |++||+|++|||+++.++ +|+.+.+++. ++++++++.|.. T Consensus 40 i~V~~V~~gs~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~ll~~~-~~~v~L~v~r~~ 98 (104) T 2djt_A 40 LAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAG-GPQLHLVIRRPL 98 (104) T ss_dssp CEEEEECTTCHHHHHCSCCTTCBEEEETTEECTTCCHHHHHHHHHHT-CSEEEEEECCCC T ss_pred EEEEEECCCCHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEECCC T ss_conf 89999889996998199999999999999998899899999999758-997999998699 No 143 >1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1 Probab=98.09 E-value=1.8e-06 Score=62.88 Aligned_cols=58 Identities=21% Similarity=0.354 Sum_probs=49.8 Q ss_pred CCCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 32000245675565300-145662888878304540--011111014678863169996587 Q gi|254780773|r 119 KPVVSNVSPASPAAIAG-VKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 119 ~p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) .++|..|.++|||+++| |++||+|++|||+++.++ +++.+.+++.+ +++++++.|... T Consensus 37 ~~~V~~v~~gg~A~~~g~l~~GD~Il~INg~~v~~~s~~~v~~~l~~~~-~~v~l~v~R~~~ 97 (103) T 1wfv_A 37 DLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGG-RRVRLLLKRGTG 97 (103) T ss_dssp EEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHHC-SEECEEEECTTC T ss_pred CEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEECCC T ss_conf 9899998389958852898999999999999998997999999997389-969999998999 No 144 >1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Probab=98.09 E-value=3e-06 Score=61.33 Aligned_cols=59 Identities=22% Similarity=0.407 Sum_probs=49.7 Q ss_pred CCCCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCC--CCHHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 332000245675565300-1456628888783045--40011111014678863169996587 Q gi|254780773|r 118 MKPVVSNVSPASPAAIAG-VKKGDCIISLDGITVS--AFEEVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 118 ~~p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~--s~~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) ...+|..|.++|||+++| |++||+|++|||..+. +.+|+.+.+++. ++.+++++.|+.+ T Consensus 39 ~g~~V~~v~~~g~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~llk~~-~~~v~l~v~~~~~ 100 (113) T 1um7_A 39 EGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRA-GQSVTIVAQYRPE 100 (113) T ss_dssp CCCBCCCBCSSSHHHHTTCCCTTCEEEEESSCBCTTCCHHHHHHHHHSC-CSEEEEEEECCHH T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEEECCC T ss_conf 9989999878998998297999999999999998899899999999808-9959999998983 No 145 >1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 1ry4_A 1x8s_A 1rzx_A Probab=98.08 E-value=2.5e-06 Score=61.91 Aligned_cols=55 Identities=20% Similarity=0.413 Sum_probs=46.4 Q ss_pred CCCCCCCCCHHHHHH-CCCCCEEEEECCCCCC--CCHHHHHHCCCCCCCCCEEEEEECC Q ss_conf 000245675565300-1456628888783045--4001111101467886316999658 Q gi|254780773|r 121 VVSNVSPASPAAIAG-VKKGDCIISLDGITVS--AFEEVAPYVRENPLHEISLVLYREH 176 (349) Q Consensus 121 ~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~--s~~dl~~~i~~~~g~~v~i~v~R~~ 176 (349) +|..|.++|||+.+| |++||+|++|||+++. +.+++.+.+++.+ ..++++|.+.+ T Consensus 68 ~V~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~-~~v~l~V~p~~ 125 (128) T 1nf3_C 68 FISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANS-RNLIITVRPAN 125 (128) T ss_dssp EEEEECTTCHHHHHTCCCTTCEEEEETTEESTTCCHHHHHHHHHHTT-TSEEEEEECCC T ss_pred EEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEECC T ss_conf 99998999989984999999999999999977997999999998399-95999997067 No 146 >3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A Probab=98.08 E-value=2.3e-06 Score=62.17 Aligned_cols=59 Identities=20% Similarity=0.378 Sum_probs=49.2 Q ss_pred CCCCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 332000245675565300-145662888878304540--011111014678863169996587 Q gi|254780773|r 118 MKPVVSNVSPASPAAIAG-VKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 118 ~~p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) ...+|..+.++|||+.+| |++||+|++|||.++.++ +|+.+.+++ +++.+++++.|+-+ T Consensus 35 ~~v~V~~v~~~g~A~~~G~l~~GD~Il~VNg~~v~~~~~~ev~~ll~~-~~~~v~L~v~~~p~ 96 (104) T 3i4w_A 35 EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKN-AGQTVTIIAQYKPE 96 (104) T ss_dssp CCEEEEEECTTSHHHHHCCCCTTEEEEEETTEECTTCCHHHHHHHHHT-SCSEEEEEEEECHH T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHC-CCCEEEEEEEECCC T ss_conf 997999989999899749899999999989946589989999999983-99919999998984 No 147 >3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consortium, SGC, cytoplasm, polymorphism, protein binding; 2.60A {Homo sapiens} Probab=98.07 E-value=4e-06 Score=60.46 Aligned_cols=61 Identities=16% Similarity=0.194 Sum_probs=49.8 Q ss_pred CCCCCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCCC--HHHHHHCCCCC-CCCCEEEEEECCC Q ss_conf 3332000245675565300-145662888878304540--01111101467-8863169996587 Q gi|254780773|r 117 VMKPVVSNVSPASPAAIAG-VKKGDCIISLDGITVSAF--EEVAPYVRENP-LHEISLVLYREHV 177 (349) Q Consensus 117 ~~~p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s~--~dl~~~i~~~~-g~~v~i~v~R~~~ 177 (349) .-..+|..|.|+|||+++| |++||+|++|||+++..+ +|+.+.+++.| +.++++.+.|... T Consensus 27 ~~~~~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~t~~ev~~~Lk~~~~~~~~~l~l~~p~k 91 (95) T 3gge_A 27 VGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTMKLIEPKK 91 (95) T ss_dssp SSCCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCTTCEEEEEEEEECS T ss_pred CCEEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEEEEECCCC T ss_conf 84099999899997998299999999999999998899799999999769999789999937886 No 148 >1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Probab=98.06 E-value=2.4e-06 Score=62.00 Aligned_cols=59 Identities=20% Similarity=0.359 Sum_probs=49.5 Q ss_pred CCCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCC--CCHHHHHHCCCCCCCCCEEEEEECCCC Q ss_conf 32000245675565300-1456628888783045--400111110146788631699965873 Q gi|254780773|r 119 KPVVSNVSPASPAAIAG-VKKGDCIISLDGITVS--AFEEVAPYVRENPLHEISLVLYREHVG 178 (349) Q Consensus 119 ~p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~--s~~dl~~~i~~~~g~~v~i~v~R~~~~ 178 (349) ..+|..|.++|||+++| |++||+|++|||+++. +.+++.+.+++.+ +++++++.|.... T Consensus 43 ~i~V~~V~~~s~A~~~g~L~~GD~Il~INg~~v~~~~~~ev~~ll~~~~-~~v~l~v~~~~~~ 104 (117) T 1v62_A 43 VITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASIS-EKVRLEILPVPQS 104 (117) T ss_dssp EEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSCS-SEEEEEECCBTTB T ss_pred CEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CCEEEEEEECCCC T ss_conf 8899998889989984999728899999999988998999999998399-9489999969977 No 149 >1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A Probab=98.05 E-value=1.9e-06 Score=62.64 Aligned_cols=57 Identities=21% Similarity=0.285 Sum_probs=48.3 Q ss_pred CCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCC--CHHHHHHCCCC------CCCCCEEEEEECC Q ss_conf 2000245675565300-14566288887830454--00111110146------7886316999658 Q gi|254780773|r 120 PVVSNVSPASPAAIAG-VKKGDCIISLDGITVSA--FEEVAPYVREN------PLHEISLVLYREH 176 (349) Q Consensus 120 p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s--~~dl~~~i~~~------~g~~v~i~v~R~~ 176 (349) .+|..|.++|||+++| |++||+|++|||+++.+ .+|..+.++++ ...++++++.|.. T Consensus 57 i~V~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~evv~~lr~a~~~~~~~~~~V~L~V~R~~ 122 (127) T 1wg6_A 57 IFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRS 122 (127) T ss_dssp EEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHHHHHHHTCEEEEEEEECS T ss_pred EEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEECC T ss_conf 899998999808755997769999999999988998999999998644345777887999993279 No 150 >1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2 Probab=98.05 E-value=2.6e-06 Score=61.78 Aligned_cols=57 Identities=19% Similarity=0.360 Sum_probs=45.4 Q ss_pred CCCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEEC Q ss_conf 32000245675565300-145662888878304540--0111110146788631699965 Q gi|254780773|r 119 KPVVSNVSPASPAAIAG-VKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYRE 175 (349) Q Consensus 119 ~p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~ 175 (349) ..+|.+|.++|||+++| |++||+|++|||+++.++ +|..+.++..+.....+.+.|. T Consensus 43 ~i~I~~V~~gs~A~~~g~l~~GD~Il~VNg~~v~~~s~~~v~~~lr~~~~~~~l~v~~~~ 102 (119) T 1x6d_A 43 VITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTRK 102 (119) T ss_dssp SCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSSSEEEEEEEC T ss_pred CEEEEEECCCCCHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCEEEEEEEEC T ss_conf 889999879987765099889999999999987799799999999738997699999827 No 151 >1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A Probab=98.05 E-value=2.2e-06 Score=62.24 Aligned_cols=55 Identities=24% Similarity=0.423 Sum_probs=47.0 Q ss_pred CCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECC Q ss_conf 2000245675565300145662888878304540--01111101467886316999658 Q gi|254780773|r 120 PVVSNVSPASPAAIAGVKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREH 176 (349) Q Consensus 120 p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~ 176 (349) -+|..|.|+|||+.+ |++||+|++|||+++.++ +|..+.+++. ++++++++.|+- T Consensus 37 i~I~~v~~gg~A~~~-L~~GD~Il~VNg~~v~~~t~~~av~~l~~~-~~~v~L~V~R~~ 93 (95) T 1mfg_A 37 IFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHGQAVSLLKTF-QNTVELIIVREV 93 (95) T ss_dssp EEEEEECTTSTTTTT-CCTTCEEEEETTEECTTCBHHHHHHHHHHC-CSEEEEEEEEEC T ss_pred EEEEEECCCCHHHHC-CCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEEEEC T ss_conf 999997899947964-889999999999998899899999999819-997999999967 No 152 >1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A Probab=98.05 E-value=3e-06 Score=61.30 Aligned_cols=59 Identities=20% Similarity=0.375 Sum_probs=49.2 Q ss_pred CCCCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 332000245675565300-145662888878304540--011111014678863169996587 Q gi|254780773|r 118 MKPVVSNVSPASPAAIAG-VKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 118 ~~p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) ...+|..|.++|||+++| |++||+|++|||+.+.+. ++..+.++.. ++.+++++.|+.+ T Consensus 38 ~gi~V~~V~~~g~A~~~G~L~~GD~Il~INg~~v~~~s~~e~~~ll~~~-~~~v~L~v~~~~~ 99 (119) T 1tp5_A 38 EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNA-GQTVTIIAQYKPE 99 (119) T ss_dssp CCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTS-CSEEEEEEEECHH T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEEECCC T ss_conf 9989999778998998398999999999999898899899999999859-9969999998984 No 153 >2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens} Probab=98.04 E-value=2.2e-06 Score=62.30 Aligned_cols=57 Identities=21% Similarity=0.411 Sum_probs=47.1 Q ss_pred CCCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCC--CCHHHHHHCCCC-CCCCCEEEEEEC Q ss_conf 32000245675565300-1456628888783045--400111110146-788631699965 Q gi|254780773|r 119 KPVVSNVSPASPAAIAG-VKKGDCIISLDGITVS--AFEEVAPYVREN-PLHEISLVLYRE 175 (349) Q Consensus 119 ~p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~--s~~dl~~~i~~~-~g~~v~i~v~R~ 175 (349) ..+|.+|.++|||+++| |++||+|++|||+++. +.+|..+.++.. .+..+++++.|. T Consensus 38 ~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~~~v~l~v~~~ 98 (101) T 2yt7_A 38 TAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLSIVHC 98 (101) T ss_dssp CEEEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTSCHHHHHHHHHHTTTSSEEEEEECCC T ss_pred CEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEEEEECC T ss_conf 9999998999989983999879999999999988998999999997499999899999838 No 154 >3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A Probab=98.04 E-value=3.1e-06 Score=61.21 Aligned_cols=59 Identities=25% Similarity=0.352 Sum_probs=49.4 Q ss_pred CCCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCCC Q ss_conf 32000245675565300-145662888878304540--0111110146788631699965873 Q gi|254780773|r 119 KPVVSNVSPASPAAIAG-VKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHVG 178 (349) Q Consensus 119 ~p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~~ 178 (349) ..+|..|.++|||+++| |++||+|++|||+++.++ ++..+.++.. +.++++++.|...+ T Consensus 46 ~i~V~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~llk~~-~~~v~l~i~r~~~~ 107 (125) T 3hpk_A 46 CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV-KGEVTIHYNKLQAD 107 (125) T ss_dssp SEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHS-CSEEEEEEEEECSC T ss_pred CEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEEECCCC T ss_conf 889999779998997699998999999999998999899999999809-99099999988999 No 155 >2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=98.04 E-value=3.4e-06 Score=60.97 Aligned_cols=54 Identities=19% Similarity=0.347 Sum_probs=42.1 Q ss_pred CCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEE Q ss_conf 332000245675565300145662888878304540--011111014678863169996 Q gi|254780773|r 118 MKPVVSNVSPASPAAIAGVKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYR 174 (349) Q Consensus 118 ~~p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R 174 (349) ..-+|..|.++|||+++||++||+|++|||+++.+. +++.+.+++. .+.+++.+ T Consensus 44 ~~i~V~~V~~gs~A~~~GL~~GD~Il~VNg~~v~~~~~~~~~~ll~~~---~~~l~v~~ 99 (114) T 2d8i_A 44 RRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQP---SLGLLVRT 99 (114) T ss_dssp EEEEEEECCTTSSHHHHTCCTTCCEEEESSCBGGGCCHHHHHHHHTSS---EEEEEEEE T ss_pred CCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC---CCEEEEEE T ss_conf 588999989999899838989999999999998999999999998579---97799998 No 156 >3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A Probab=98.04 E-value=2.3e-06 Score=62.06 Aligned_cols=59 Identities=14% Similarity=0.286 Sum_probs=48.2 Q ss_pred CCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCC--CHHHHHHCCCCC--CCCCEEEEEECCCC Q ss_conf 2000245675565300-14566288887830454--001111101467--88631699965873 Q gi|254780773|r 120 PVVSNVSPASPAAIAG-VKKGDCIISLDGITVSA--FEEVAPYVRENP--LHEISLVLYREHVG 178 (349) Q Consensus 120 p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s--~~dl~~~i~~~~--g~~v~i~v~R~~~~ 178 (349) -+|..|.|+|||+++| |++||+|++|||+++.. .++..+.++... ...+.+++.|.... T Consensus 35 i~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~l~~~s~~ea~~~lr~~~~~~~~v~l~v~r~~~~ 98 (108) T 3cbz_A 35 IYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGPIVLTVAKSGGG 98 (108) T ss_dssp EEEEEECTTSHHHHHCCCCTTCEEEEETTEETTSCCHHHHHHHHHHHHTSSSCEEEEEECCCC- T ss_pred EEEEEECCCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCC T ss_conf 9999989998278809996999999999999889989999999985556897199999707999 No 157 >2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=98.01 E-value=2.1e-06 Score=62.40 Aligned_cols=56 Identities=25% Similarity=0.433 Sum_probs=47.3 Q ss_pred CCCCCCCCCCHHHH-HHCCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECC Q ss_conf 20002456755653-00145662888878304540--01111101467886316999658 Q gi|254780773|r 120 PVVSNVSPASPAAI-AGVKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREH 176 (349) Q Consensus 120 p~I~~V~~~spA~~-AGL~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~ 176 (349) .+|..|.++|||++ ++|++||+|++|||+++.++ +|+.+.+++.+ .++++++.|+- T Consensus 32 ~~V~~v~~~g~A~~~g~l~~GD~Il~INg~~v~~~~~~ev~~~l~~~~-~~v~L~v~r~P 90 (93) T 2dkr_A 32 IYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQ-GSVKLVVRSGP 90 (93) T ss_dssp CEEEEECTTSHHHHHCCCCTTCBEEEETTEECTTSCHHHHHHHHHHCC-SEEEEEECCCC T ss_pred EEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEECC T ss_conf 899998999979974999989999999999989998999999998299-92999999089 No 158 >1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Probab=98.01 E-value=2.7e-06 Score=61.64 Aligned_cols=59 Identities=20% Similarity=0.336 Sum_probs=50.0 Q ss_pred CCCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCC--CHHHHHHCCCCC-CCCCEEEEEECCC Q ss_conf 32000245675565300-14566288887830454--001111101467-8863169996587 Q gi|254780773|r 119 KPVVSNVSPASPAAIAG-VKKGDCIISLDGITVSA--FEEVAPYVRENP-LHEISLVLYREHV 177 (349) Q Consensus 119 ~p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s--~~dl~~~i~~~~-g~~v~i~v~R~~~ 177 (349) ..+|..|.++|||+.+| |++||+|++|||+++.+ .+|..+.++..+ +..+++++.|+.. T Consensus 35 ~i~V~~v~~~~~A~~~g~L~~GD~Il~VNg~~v~~~~~~e~~~llr~~~~~~~v~l~v~r~~~ 97 (103) T 1uep_A 35 PILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRKVL 97 (103) T ss_dssp CCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEEECC T ss_pred CEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEEEEEECCC T ss_conf 899999899992897699988999999999996899799999999739999989999975899 No 159 >2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesion; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A Probab=98.00 E-value=3.9e-06 Score=60.56 Aligned_cols=58 Identities=17% Similarity=0.333 Sum_probs=48.6 Q ss_pred CCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCC--CHHHHHHCCCCCCCCCEEEEEECCCC Q ss_conf 3200024567556530014566288887830454--00111110146788631699965873 Q gi|254780773|r 119 KPVVSNVSPASPAAIAGVKKGDCIISLDGITVSA--FEEVAPYVRENPLHEISLVLYREHVG 178 (349) Q Consensus 119 ~p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s--~~dl~~~i~~~~g~~v~i~v~R~~~~ 178 (349) ...|..|.++|||+ ++|++||+|++|||+++.+ .+|..+.++++ ++.+++++.|.... T Consensus 40 ~i~I~~v~~gs~a~-~~l~~GD~Il~INg~~v~~~s~~e~~~llr~~-~~~v~L~V~R~~~~ 99 (107) T 2h2b_A 40 SIVISDVLKGGPAE-GQLQENDRVAMVNGVSMDNVEHAFAVQQLRKS-GKNAKITIRRKKGG 99 (107) T ss_dssp CEEEEEECTTSTTB-TTBCTTCEEEEETTEECTTCCHHHHHHHHHTC-CSEEEEEEEEESCC T ss_pred CEEEEEECCCCHHH-CCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEEECCCC T ss_conf 88999978899778-38998999999999999999899999999828-99799999973789 No 160 >1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Probab=97.99 E-value=3.4e-06 Score=60.97 Aligned_cols=57 Identities=19% Similarity=0.408 Sum_probs=48.4 Q ss_pred CCCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCCCH--HHHHHCCCCCCCCCEEEEEECC Q ss_conf 32000245675565300-1456628888783045400--1111101467886316999658 Q gi|254780773|r 119 KPVVSNVSPASPAAIAG-VKKGDCIISLDGITVSAFE--EVAPYVRENPLHEISLVLYREH 176 (349) Q Consensus 119 ~p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s~~--dl~~~i~~~~g~~v~i~v~R~~ 176 (349) ..+|..|.++|||+.+| |++||+|++|||+++..+. ++.+.++..+ .++++++.+.. T Consensus 49 ~i~V~~v~~gg~A~~~g~l~~GD~Il~Ing~~v~~~~~~~v~~ll~~~~-~~v~l~v~~~~ 108 (113) T 1va8_A 49 SVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMH-GTLTFVLIPSS 108 (113) T ss_dssp SEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC-EEEEEEEECCC T ss_pred CEEEEEECCCCHHHHCCCCCCCCEEEEECCCEECCCCHHHHHHHHHCCC-CCEEEEEEECC T ss_conf 8999997899979981899749999999991777996999999985699-92999998799 No 161 >1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1 Probab=97.98 E-value=4.8e-06 Score=59.93 Aligned_cols=57 Identities=21% Similarity=0.367 Sum_probs=45.3 Q ss_pred CCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCC--CHHHHHHCCCCCC---CCCEEEEEECC Q ss_conf 2000245675565300-14566288887830454--0011111014678---86316999658 Q gi|254780773|r 120 PVVSNVSPASPAAIAG-VKKGDCIISLDGITVSA--FEEVAPYVRENPL---HEISLVLYREH 176 (349) Q Consensus 120 p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s--~~dl~~~i~~~~g---~~v~i~v~R~~ 176 (349) -+|..|.++|||+.+| |++||+|++|||+++.. .+|..+.+++.++ .++++.+.|.+ T Consensus 43 i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~llk~~~~~~~~~v~~~~~~s~ 105 (109) T 1wi4_A 43 VYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIRSG 105 (109) T ss_dssp EEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCSSSSCEEEEEECCC T ss_pred EEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHCCCCCCCEEEEEEEECC T ss_conf 999997899979986987789999999999988997999999998777998867999987279 No 162 >2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1 Probab=97.97 E-value=4.2e-06 Score=60.33 Aligned_cols=56 Identities=20% Similarity=0.322 Sum_probs=46.7 Q ss_pred CCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 2000245675565300145662888878304540--011111014678863169996587 Q gi|254780773|r 120 PVVSNVSPASPAAIAGVKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 120 p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) -+|..|.++|||+ ++|++||+|++|||+++.++ ++..+.+++. ++.+++++.|+.. T Consensus 48 i~I~~v~~gs~A~-~~L~~GD~Il~INg~~v~~~~~~evv~~lr~~-~~~v~l~V~r~~~ 105 (117) T 2csj_A 48 IVISDVLPGGPAD-GLLQENDRVVMVNGTPMEDVLHSFAVQQLRKS-GKIAAIVVKRPRK 105 (117) T ss_dssp CEEEEECTTSSHH-HHBCTTCEEEEESSCBCBTCCHHHHHHHHHHS-CSEEEEEEEEEEE T ss_pred EEEEEECCCCCHH-CCCCCCCEEEEECCEECCCCCHHHHHHHHHHC-CCEEEEEEEECCC T ss_conf 8998989998100-38999999999999999899899999999808-9969999997898 No 163 >1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} Probab=97.97 E-value=6.4e-06 Score=59.04 Aligned_cols=58 Identities=19% Similarity=0.233 Sum_probs=49.2 Q ss_pred CCCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 32000245675565300-145662888878304540--011111014678863169996587 Q gi|254780773|r 119 KPVVSNVSPASPAAIAG-VKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 119 ~p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) ..+|..|.++|||+++| |++||+|++|||.++.++ +++.+.++.. ++.+++++.|... T Consensus 104 ~i~i~~v~~~~~a~~~g~l~~GD~il~vng~~~~~~~~~~~~~~l~~~-~~~v~l~v~~~~~ 164 (263) T 1z87_A 104 PILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKT-GKEVVLEVKYMKE 164 (263) T ss_dssp EEEEEECCTTSHHHHCTTCCSSCEEEEESSCBCTTSCHHHHHHHHHHC-CSCCCEEEECCSS T ss_pred CEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHC-CCEEEEEEEECCC T ss_conf 869999899997897089999999999899678899599999999858-9978899996787 No 164 >1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Probab=97.94 E-value=5.5e-06 Score=59.50 Aligned_cols=55 Identities=27% Similarity=0.525 Sum_probs=44.7 Q ss_pred CCCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCC--CHHHHHHCCCCCCCCCEEEEEE Q ss_conf 32000245675565300-14566288887830454--0011111014678863169996 Q gi|254780773|r 119 KPVVSNVSPASPAAIAG-VKKGDCIISLDGITVSA--FEEVAPYVRENPLHEISLVLYR 174 (349) Q Consensus 119 ~p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s--~~dl~~~i~~~~g~~v~i~v~R 174 (349) ..+|..|.|+|||+++| |++||+|++|||+++.+ .+|+.+.+++.+ +...+++.+ T Consensus 46 ~i~V~~i~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~e~~~~l~~~~-~~~~l~l~~ 103 (122) T 1v5q_A 46 PPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSS-ITSKVTLEI 103 (122) T ss_dssp CCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHHT-TTTCEEEEE T ss_pred CEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHCC-CCEEEEEEE T ss_conf 9499998999979970998789999999999999997999999998189-950899999 No 165 >1u3b_A Amyloid beta A4 precursor protein-binding, family A, member 1; X11S/mints, PDZ domain, scaffold protein, protein trafficking, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 2yt8_A Probab=97.93 E-value=9.9e-06 Score=57.75 Aligned_cols=59 Identities=20% Similarity=0.304 Sum_probs=50.8 Q ss_pred CCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 332000245675565300145662888878304540--011111014678863169996587 Q gi|254780773|r 118 MKPVVSNVSPASPAAIAGVKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 118 ~~p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) ..+.+..+.++|||+.+||++||+|++|||+++.++ +++.+.+++++ .++++++.+... T Consensus 112 ~~~~v~~v~~g~~A~~~gL~~GD~Il~VNG~~v~~~s~~e~~~ll~~~~-~~v~l~V~p~~~ 172 (185) T 1u3b_A 112 QNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAV-GEIHMKTMPAAM 172 (185) T ss_dssp ETTEEEEECTTSHHHHHTCCTTEEEEEETTEECTTSCHHHHHHHHHTCC-EEEEEEEEECSC T ss_pred CCCEEEEEECCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHHCC-CEEEEEEEECCH T ss_conf 5965996525885765789989999999998998999999999998199-959999950614 No 166 >1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A Probab=97.93 E-value=4.6e-06 Score=60.07 Aligned_cols=54 Identities=24% Similarity=0.447 Sum_probs=46.3 Q ss_pred CCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECC Q ss_conf 000245675565300145662888878304540--01111101467886316999658 Q gi|254780773|r 121 VVSNVSPASPAAIAGVKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREH 176 (349) Q Consensus 121 ~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~ 176 (349) +|..|.|+|||+.+ |++||+|++|||+++.++ +|..+.+++. ++++++++.|+- T Consensus 46 ~V~~V~~gg~A~~~-L~~GD~Il~VNg~~v~~~~~~eav~~l~~~-~~~v~L~V~R~~ 101 (103) T 1n7t_A 46 FVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHGQAVSLLKTF-QNTVELIIVREV 101 (103) T ss_dssp ECCCBSSSSTTSSS-CCTTCEEEEETTEECSSCCHHHHHHHHHHC-CSEEEEEEECCC T ss_pred EEEEECCCCHHHHC-CCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEEEEC T ss_conf 99997899946716-689999999999998899799999999728-997999999966 No 167 >2vph_A Tyrosine-protein phosphatase non-receptor type 4; PTPN4, ptpmeg, hydrolase, cytoplasm, cytoskeleton, megakaryocyte, dephosphorylation; 1.90A {Homo sapiens} Probab=97.91 E-value=7.6e-06 Score=58.55 Aligned_cols=58 Identities=21% Similarity=0.481 Sum_probs=45.1 Q ss_pred CCCCCCCCCCCHHHHH--HCCCCCEEEEECCCCCCC--CHHHHHHCCCCC---CCCCEEEEEECC Q ss_conf 3200024567556530--014566288887830454--001111101467---886316999658 Q gi|254780773|r 119 KPVVSNVSPASPAAIA--GVKKGDCIISLDGITVSA--FEEVAPYVRENP---LHEISLVLYREH 176 (349) Q Consensus 119 ~p~I~~V~~~spA~~A--GL~~GD~Il~InG~~V~s--~~dl~~~i~~~~---g~~v~i~v~R~~ 176 (349) ..+|..|.++|||+++ ||++||+|++|||.++.+ .+|..+++++.. ..++.+++.|+. T Consensus 31 ~~~V~~V~~~s~A~~~~g~L~~GD~Il~INg~~v~~~~~~~~~~~lr~~~~~~~~~v~l~v~~~~ 95 (100) T 2vph_A 31 PVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPNA 95 (100) T ss_dssp EEEEEEECTTSHHHHSSSCCCTTCEEEEETTEECTTCCHHHHHHHHHCGGGCBTTBEEEEEECCS T ss_pred CEEEEEECCCCHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHHCCCCCCCEEEEEECCCC T ss_conf 99999988999789852899999999999999989998999999998668889739999992897 No 168 >1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A Probab=97.90 E-value=3.9e-06 Score=60.54 Aligned_cols=56 Identities=21% Similarity=0.420 Sum_probs=45.5 Q ss_pred CCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 2000245675565300145662888878304540--011111014678863169996587 Q gi|254780773|r 120 PVVSNVSPASPAAIAGVKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 120 p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) .+|..|.++|||+++||++||+|++|||+++.++ ++..+.++.. ..+.+++.|... T Consensus 43 i~V~~V~~~s~A~~~gl~~GD~Il~VNg~~v~~~~~~~~~~llr~~--~~~~l~v~~~~~ 100 (114) T 1x5n_A 43 IFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSS--RSLTISIVAAAG 100 (114) T ss_dssp EEEEEECTTSTTTTTTCCTTCEEEEETTEETTSCCTTHHHHHHHHC--SSEEEEECSSTT T ss_pred EEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC--CCEEEEEEECCC T ss_conf 8999984899788579999999999999998999899999998689--987999998988 No 169 >3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} Probab=97.89 E-value=6.1e-06 Score=59.18 Aligned_cols=57 Identities=19% Similarity=0.333 Sum_probs=46.7 Q ss_pred CCCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECC Q ss_conf 32000245675565300-145662888878304540--01111101467886316999658 Q gi|254780773|r 119 KPVVSNVSPASPAAIAG-VKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREH 176 (349) Q Consensus 119 ~p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~ 176 (349) ..+|.++.++|||+++| |++||+|++|||+++..+ +|..+.++..+ .++++.+.+.. T Consensus 29 ~~~I~~i~~gg~A~~~G~l~~GD~Il~INg~~v~~~t~~e~~~~lk~~~-~~v~L~i~p~~ 88 (93) T 3o46_A 29 AIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQ-GAITFKIIPGS 88 (93) T ss_dssp CEEEEEECTTSHHHHHTCCCTTCEEEEETTEESTTSCHHHHHHHHHHCC-EEEEEEEECC- T ss_pred CEEEEEECCCCHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CCEEEEEEECC T ss_conf 8999998899858970997679999999999988998999999997699-91999996088 No 170 >1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Probab=97.88 E-value=3.7e-06 Score=60.70 Aligned_cols=59 Identities=20% Similarity=0.322 Sum_probs=45.8 Q ss_pred CCCCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCCC--HHHHHHCCCC----CCCCCEEEEEECC Q ss_conf 332000245675565300-145662888878304540--0111110146----7886316999658 Q gi|254780773|r 118 MKPVVSNVSPASPAAIAG-VKKGDCIISLDGITVSAF--EEVAPYVREN----PLHEISLVLYREH 176 (349) Q Consensus 118 ~~p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s~--~dl~~~i~~~----~g~~v~i~v~R~~ 176 (349) ..++|.+|.++|||+++| |++||+|++|||+++.+. +|..+.+++. ..+++++.+.+.+ T Consensus 32 ~~~~I~~v~~gg~A~~~G~L~~GD~Il~INg~~v~~~s~~e~~~ll~~a~~~~~~~~v~l~v~~~~ 97 (103) T 1ufx_A 32 PLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYIDFLVTEFN 97 (103) T ss_dssp SSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSSCSEEEEEECCCC T ss_pred CCEEEEEECCCCCHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHHCCCCCCCEEEEEEECCC T ss_conf 999999984895042259998899999999999889979999999998647787767999997999 No 171 >1x45_A Amyloid beta (A4) precursor protein-binding, family A, member 1 (X11); PDZ domain, neuron-specific XII protein, adapter protein XII alpha; NMR {Homo sapiens} SCOP: b.36.1.1 Probab=97.87 E-value=1.2e-05 Score=57.26 Aligned_cols=57 Identities=18% Similarity=0.369 Sum_probs=45.4 Q ss_pred CCCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCC--CHHHHHHCCCCCC-CCCEEEEEEC Q ss_conf 32000245675565300-14566288887830454--0011111014678-8631699965 Q gi|254780773|r 119 KPVVSNVSPASPAAIAG-VKKGDCIISLDGITVSA--FEEVAPYVRENPL-HEISLVLYRE 175 (349) Q Consensus 119 ~p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s--~~dl~~~i~~~~g-~~v~i~v~R~ 175 (349) ..+|.++.++|||+.+| |++||+|++|||+++.+ .+|..+.++..+. ..+.+++.|+ T Consensus 34 ~i~I~~v~~gg~A~~~G~l~~GD~Il~INg~~v~~~t~~~~~~~l~~~~~~~~v~l~i~~~ 94 (98) T 1x45_A 34 TVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRVKLNIVSG 94 (98) T ss_dssp CCEEEEECTTCHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTCSEEEEEEECC T ss_pred CEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEEEEECC T ss_conf 9999998999989972999999999999999988998999999997399984899999669 No 172 >3bpu_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; zinc, structural genomics consortium, SGC, alternative splicing; 1.60A {Homo sapiens} Probab=97.77 E-value=1.6e-05 Score=56.31 Aligned_cols=54 Identities=24% Similarity=0.402 Sum_probs=43.1 Q ss_pred CCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCC--HHHHHHCCCC-CCCCCEEEEEECC Q ss_conf 000245675565300145662888878304540--0111110146-7886316999658 Q gi|254780773|r 121 VVSNVSPASPAAIAGVKKGDCIISLDGITVSAF--EEVAPYVREN-PLHEISLVLYREH 176 (349) Q Consensus 121 ~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~--~dl~~~i~~~-~g~~v~i~v~R~~ 176 (349) ++..+.+ +|+.+||++||+|++|||+++..+ +++.+.+++. +++++++++.|+. T Consensus 30 ~v~~v~~--~~a~~~l~~GD~Il~INg~~v~~~~~~e~v~~ir~~~~~~~v~l~V~R~~ 86 (88) T 3bpu_A 30 RVKQIVD--SPRSRGLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVTLLVQRQT 86 (88) T ss_dssp EEEECCC----CCTTCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEEEC T ss_pred EEEECCC--HHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEEEEEECC T ss_conf 9986379--38984999899999999999789989999999973999899999999789 No 173 >2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Probab=97.71 E-value=2.7e-05 Score=54.70 Aligned_cols=56 Identities=21% Similarity=0.521 Sum_probs=42.9 Q ss_pred CCCCCCCCCCCHHHHH--HCCCCCEEEEECCCCCCCC--HHHHHHCCCCC-CCC--CEEEEEE Q ss_conf 3200024567556530--0145662888878304540--01111101467-886--3169996 Q gi|254780773|r 119 KPVVSNVSPASPAAIA--GVKKGDCIISLDGITVSAF--EEVAPYVRENP-LHE--ISLVLYR 174 (349) Q Consensus 119 ~p~I~~V~~~spA~~A--GL~~GD~Il~InG~~V~s~--~dl~~~i~~~~-g~~--v~i~v~R 174 (349) ..+|..|.++|||+++ +|++||+|++|||+++.++ +|..+.++..+ ... +.+.+.+ T Consensus 42 ~v~V~~i~~gs~A~~~~g~L~~GD~Il~INg~~v~~~~~~ea~~~lk~~~~~~~~~v~l~vr~ 104 (119) T 2cs5_A 42 PVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRP 104 (119) T ss_dssp EEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHHHHCCSSCEEEEEEC T ss_pred CEEEEEECCCCHHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHCCCCCCCEEEEEECC T ss_conf 999999837975565105898898999999999999989999999985788897289999878 No 174 >1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1 Probab=97.63 E-value=3.1e-05 Score=54.34 Aligned_cols=50 Identities=22% Similarity=0.288 Sum_probs=41.7 Q ss_pred CCHHHHHHCCCCCEEEEECCCCCCC--CHHHHHHCCCC-CCCCCEEEEEECCC Q ss_conf 7556530014566288887830454--00111110146-78863169996587 Q gi|254780773|r 128 ASPAAIAGVKKGDCIISLDGITVSA--FEEVAPYVREN-PLHEISLVLYREHV 177 (349) Q Consensus 128 ~spA~~AGL~~GD~Il~InG~~V~s--~~dl~~~i~~~-~g~~v~i~v~R~~~ 177 (349) .+|+..++|++||+|++|||+++.. .+|..+.+++. +++++++++.|+.. T Consensus 40 ~~~~~~~~L~~GD~Il~VNg~~v~~~t~~evv~~lr~~~~g~~v~L~v~R~~~ 92 (96) T 1ujv_A 40 LDIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRGSG 92 (96) T ss_dssp SCGGGSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEEEEEECCSS T ss_pred ECCCCCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEEEEEECCC T ss_conf 28110478899999999999996899899999999729999989999987998 No 175 >1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A Probab=97.53 E-value=0.00013 Score=50.09 Aligned_cols=59 Identities=27% Similarity=0.455 Sum_probs=49.0 Q ss_pred CCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCCC Q ss_conf 2000245675565300145662888878304540--0111110146788631699965873 Q gi|254780773|r 120 PVVSNVSPASPAAIAGVKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHVG 178 (349) Q Consensus 120 p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~~ 178 (349) ..+..+.++|||++||+++||+|+++||.++... .+....++..++.++.+++.|.... T Consensus 101 ~~~~~~~~~spa~~agl~~Gd~i~~v~~~~~~~~~~~~~~~ll~g~~g~~v~l~~~~~~~~ 161 (388) T 1fc6_A 101 VVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGAP 161 (388) T ss_dssp EEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETTEE T ss_pred EEEEECCCCCCHHHCCCCCCCCEEEECCCEEEEEEHHHHHHHHCCCCCCEEEEEEEECCCC T ss_conf 9999468999167668856762564068221230088899985377885599998204788 No 176 >2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A Probab=97.15 E-value=0.00031 Score=47.41 Aligned_cols=55 Identities=24% Similarity=0.419 Sum_probs=44.9 Q ss_pred CCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 000245675565300145662888878304540--011111014678863169996587 Q gi|254780773|r 121 VVSNVSPASPAAIAGVKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 121 ~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) .|..|.+++||+.+ |++||+|++|||..+.++ ++....++.. +..+.+++.|+.. T Consensus 27 ~v~~v~~~~~a~~~-l~~gD~i~~vn~~~~~~~~~~~a~~~~~~~-~~~~~l~v~r~~~ 83 (195) T 2qbw_A 27 FVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHGQAVSLLKTF-QNTVELIIVREVG 83 (195) T ss_dssp EEEEECTTSTTTTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHC-CSEEEEEEEEECS T ss_pred EEEEECCCCHHHHC-CCCCCEEEEECCEEEEEEHHHHHHHHHHCC-CCEEEEEEEECCC T ss_conf 99994899946844-678999999999597860288999998607-9768999972256 No 177 >1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Probab=96.41 E-value=0.0022 Score=41.50 Aligned_cols=54 Identities=15% Similarity=0.255 Sum_probs=43.2 Q ss_pred CCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCH--HHHHHCCCCCCCCCEEEEEE Q ss_conf 20002456755653001456628888783045400--11111014678863169996 Q gi|254780773|r 120 PVVSNVSPASPAAIAGVKKGDCIISLDGITVSAFE--EVAPYVRENPLHEISLVLYR 174 (349) Q Consensus 120 p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~~--dl~~~i~~~~g~~v~i~v~R 174 (349) ..+..+..+++|+.+++++||+|++|||+++.++. ++.+.++. ++..++++|.- T Consensus 109 ~~~~~~~~~~~~~~~~~~~Gd~il~iNg~~~~~~~~~~v~~ll~~-~~~~v~l~V~p 164 (166) T 1w9e_A 109 GKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILST-SGTVVTITIMP 164 (166) T ss_dssp TEEEEECTTSHHHHTTCCSSEEEEEETTEECTTCCHHHHHHHHHH-SCSEEEEEEEE T ss_pred CCCCEEEECCHHHCCCCCCCEEHHEECCEECCCCCHHHHHHHHHC-CCCEEEEEEEC T ss_conf 852101310012215664240013058942389999999999986-99869999972 No 178 >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Probab=93.90 E-value=0.019 Score=35.08 Aligned_cols=14 Identities=36% Similarity=0.664 Sum_probs=5.0 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99973377999998 Q gi|254780773|r 18 VVIHEFGHYMVARL 31 (349) Q Consensus 18 v~iHE~GH~~~Ar~ 31 (349) +.+||.||.++|-+ T Consensus 275 iA~HEAGHAvva~l 288 (476) T 2ce7_A 275 IAYHEAGHAVVSTV 288 (476) T ss_dssp HHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHH T ss_conf 31799999999997 No 179 >2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1 Probab=90.93 E-value=0.061 Score=31.61 Aligned_cols=67 Identities=27% Similarity=0.288 Sum_probs=37.8 Q ss_pred HHHHHHHHHHHHHHHHC--CEEEEEEEECCCHHEEEEECCCEEEEEEEEEECCEEECCCCCCCHHHHCCCCCCCCHHHHH Q ss_conf 99997337799999849--7500455306831127860598079999771121110012445506650368421013421 Q gi|254780773|r 17 IVVIHEFGHYMVARLCN--IRVLSFSVGFGPELIGITSRSGVRWKVSLIPLGGYVSFSEDEKDMRSFFCAAPWKKILTVL 94 (349) Q Consensus 17 ~v~iHE~GH~~~Ar~~g--v~V~~FsiGfgp~l~~~~~k~~t~y~i~~~PlGgyV~~~~~e~~~~~f~~~~~~~R~~i~~ 94 (349) .+.+||.||.++|-+++ -+|.+=+|- .++. . .|++.+..++ +...........++.+++ T Consensus 18 ~iA~HEAGHAvva~~l~~~~~v~kvsI~---------prg~--------~-~g~~~~~~~~-~~~~~tk~~l~~~i~v~L 78 (238) T 2di4_A 18 KIAIHEAGHALMGLVSDDDDKVHKISII---------PRGM--------A-LGVTQQLPIE-DKHIYDKKDLYNKILVLL 78 (238) T ss_dssp HHHHHHHHHHHHHHHCSSCCCCCCEECC-----------------------------------CCCCBHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEEE---------CCCC--------C-CCCEEECCCC-CCCCCCHHHHHHHHHHHH T ss_conf 9999999999999981788971279994---------4776--------6-7745546841-124365999999999998 Q ss_pred HHHHHHHH Q ss_conf 12333211 Q gi|254780773|r 95 AGPLANCV 102 (349) Q Consensus 95 AGp~~N~i 102 (349) ||-.+--+ T Consensus 79 gGraAE~~ 86 (238) T 2di4_A 79 GGRAAEEV 86 (238) T ss_dssp HHHHHHHH T ss_pred HHHHHHHH T ss_conf 77666610 No 180 >1hv5_A Stromelysin 3; inhibition, phosphinic inhibitor, hydrolase; HET: CPS RXP; 2.60A {Mus musculus} SCOP: d.92.1.11 Probab=80.00 E-value=0.54 Score=25.07 Aligned_cols=11 Identities=0% Similarity=0.392 Sum_probs=5.0 Q ss_pred EEEECCCEEEEE Q ss_conf 786059807999 Q gi|254780773|r 49 GITSRSGVRWKV 60 (349) Q Consensus 49 ~~~~k~~t~y~i 60 (349) +|. |....|++ T Consensus 8 kW~-~~~lTY~~ 18 (165) T 1hv5_A 8 RWE-KTDLTYRI 18 (165) T ss_dssp EEE-ECEEEEEE T ss_pred CCC-CCEEEEEE T ss_conf 489-98379999 No 181 >1bqb_A Protein (aureolysin); hydrolase, metalloproteinase; 1.72A {Staphylococcus aureus} SCOP: d.92.1.2 Probab=79.89 E-value=0.69 Score=24.32 Aligned_cols=14 Identities=7% Similarity=0.050 Sum_probs=5.7 Q ss_pred CEEEEEEEEEECCE Q ss_conf 80799997711211 Q gi|254780773|r 55 GVRWKVSLIPLGGY 68 (349) Q Consensus 55 ~t~y~i~~~PlGgy 68 (349) ++.|.+.--+-|+- T Consensus 23 ~~~y~l~d~~~~~~ 36 (301) T 1bqb_A 23 DGGFSLEDLTHQGK 36 (301) T ss_dssp TTEEESEECSSSSC T ss_pred CCEEEEEECCCCCC T ss_conf 99899987798983 No 182 >3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A Probab=74.64 E-value=1 Score=23.15 Aligned_cols=15 Identities=27% Similarity=0.505 Sum_probs=8.8 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 999973377999998 Q gi|254780773|r 17 IVVIHEFGHYMVARL 31 (349) Q Consensus 17 ~v~iHE~GH~~~Ar~ 31 (349) .|++||+||.+--+. T Consensus 109 ~v~~HEiGHaLGL~H 123 (365) T 3ba0_A 109 LTAVHEIGHSLGLGH 123 (365) T ss_dssp HHHHHHHHHHHTCCC T ss_pred EEEEEHHHHHCCCCC T ss_conf 775101322205788 No 183 >1eak_A 72 kDa type IV collagenase; hydrolyse, matrix metalloproteinase, gelatinase A; 2.66A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1ks0_A 1cxw_A Probab=70.43 E-value=1.4 Score=22.30 Aligned_cols=31 Identities=6% Similarity=0.061 Sum_probs=14.6 Q ss_pred HHHHCCE-EEEEEEECCCHHEEEEECCCEEEEEEE Q ss_conf 9984975-004553068311278605980799997 Q gi|254780773|r 29 ARLCNIR-VLSFSVGFGPELIGITSRSGVRWKVSL 62 (349) Q Consensus 29 Ar~~gv~-V~~FsiGfgp~l~~~~~k~~t~y~i~~ 62 (349) ..+|||. |..+...-+ --+|. |....|++.- T Consensus 68 ~PRCG~pD~~~~~~~~~--~~kW~-k~~lTy~i~~ 99 (421) T 1eak_A 68 KPRCGNPDVANYNFFPR--KPKWD-KNQITYRIIG 99 (421) T ss_dssp SCBCSSCSSCSSCCSSC--CCCCS-SSEEEEEECC T ss_pred CCCCCCCCCCCCCCCCC--CCCCC-CCCCEEEEEC T ss_conf 89989977544566788--99888-7863058615 No 184 >1g9k_A Serralysin; beta jelly roll, hydrolase; 1.96A {Pseudomonas} SCOP: b.80.7.1 d.92.1.6 PDB: 1o0q_A 1o0t_A 1om6_A 1om7_A 1om8_A 1omj_A 1h71_P Probab=68.07 E-value=2.1 Score=21.05 Aligned_cols=13 Identities=31% Similarity=0.424 Sum_probs=9.3 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999997337799 Q gi|254780773|r 15 IIIVVIHEFGHYM 27 (349) Q Consensus 15 ~~~v~iHE~GH~~ 27 (349) ...+++||.||.+ T Consensus 163 ~~~t~lHEIGHAL 175 (463) T 1g9k_A 163 GRQTLTHEIGHTL 175 (463) T ss_dssp HHHHHHHHHHHHH T ss_pred CEEEEEEHHHHHH T ss_conf 1245200111120 No 185 >1kap_P Alkaline protease; calcium binding protein, zinc metalloprotease; 1.64A {Pseudomonas aeruginosa PAO1} SCOP: b.80.7.1 d.92.1.6 PDB: 1jiw_P 1akl_A Probab=67.76 E-value=2.1 Score=20.98 Aligned_cols=13 Identities=31% Similarity=0.424 Sum_probs=9.6 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999997337799 Q gi|254780773|r 15 IIIVVIHEFGHYM 27 (349) Q Consensus 15 ~~~v~iHE~GH~~ 27 (349) ...+++||+||.+ T Consensus 179 ~~~tllHEIGHAL 191 (479) T 1kap_P 179 GRQTLTHEIGHTL 191 (479) T ss_dssp HHHHHHHHHHHHH T ss_pred CHHEEHHHHHHHH T ss_conf 2100010132440 No 186 >2vqx_A Metalloproteinase; thermolysin-like structure, zinc, protease, hydrolase, metalloprotease; 1.82A {Serratia proteamaculans} Probab=67.32 E-value=2.2 Score=20.88 Aligned_cols=10 Identities=20% Similarity=0.348 Sum_probs=4.2 Q ss_pred CCHHHHHHHH Q ss_conf 0503478999 Q gi|254780773|r 271 HGFNAYIAFL 280 (349) Q Consensus 271 ~G~~~~l~~~ 280 (349) .|+.+-.+++ T Consensus 267 SGI~N~afYl 276 (341) T 2vqx_A 267 SGIPNRAFYL 276 (341) T ss_dssp THHHHHHHHH T ss_pred CHHHHHHHHH T ss_conf 3088899999 No 187 >2o3e_A Neurolysin; thermolysin-like domain, substrate-binding channel, hydrolase; 2.20A {Rattus norvegicus} PDB: 1i1i_P Probab=65.93 E-value=2.4 Score=20.62 Aligned_cols=16 Identities=6% Similarity=-0.120 Sum_probs=6.8 Q ss_pred HHHHHHHHHCCCCCHH Q ss_conf 9999988827869999 Q gi|254780773|r 304 ITFLLEMIRGKSLGVS 319 (349) Q Consensus 304 ~~~~~E~i~gr~i~~~ 319 (349) ...+++..+||+++.. T Consensus 655 ~~~~~~~F~GR~p~~~ 670 (678) T 2o3e_A 655 GMDMLQNFLQREPNQK 670 (678) T ss_dssp HHHHHHHHHTSCCCSH T ss_pred HHHHHHHHCCCCCCHH T ss_conf 9999998459999838 No 188 >1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A Probab=62.74 E-value=3 Score=19.92 Aligned_cols=12 Identities=50% Similarity=0.949 Sum_probs=6.6 Q ss_pred HHHHHHHHHHHH Q ss_conf 999997337799 Q gi|254780773|r 16 IIVVIHEFGHYM 27 (349) Q Consensus 16 ~~v~iHE~GH~~ 27 (349) +.|++||+||-+ T Consensus 369 ~~VAaHEiGHsL 380 (631) T 1ck7_A 369 FLVAAHAFGHAM 380 (631) T ss_dssp HHHHHHHHHHHH T ss_pred CEEEEEEECCCC T ss_conf 124317602444 No 189 >1k7i_A PROC, secreted protease C; metalloprotease, hydrolase; 1.59A {Erwinia chrysanthemi} SCOP: b.80.7.1 d.92.1.6 PDB: 1k7g_A 1k7q_A 1go8_P 3hbv_P 3hda_P 3hbu_P 1go7_P 3hb2_P Probab=62.34 E-value=3.1 Score=19.84 Aligned_cols=13 Identities=31% Similarity=0.373 Sum_probs=9.4 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999997337799 Q gi|254780773|r 15 IIIVVIHEFGHYM 27 (349) Q Consensus 15 ~~~v~iHE~GH~~ 27 (349) ...+++||.||.+ T Consensus 182 ~~~t~lHEIGHAL 194 (479) T 1k7i_A 182 GRQTFTHEIGHAL 194 (479) T ss_dssp HHHHHHHHHHHHH T ss_pred CCEEEEEEHHHHC T ss_conf 2103331023333 No 190 >3ce2_A Putative peptidase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.60A {Chlamydophila abortus S26} Probab=61.57 E-value=3 Score=19.92 Aligned_cols=12 Identities=33% Similarity=0.473 Sum_probs=5.3 Q ss_pred CCHHHHHHHHHH Q ss_conf 301223334565 Q gi|254780773|r 258 PVGIARIAKNFF 269 (349) Q Consensus 258 PVgIa~~~~~~a 269 (349) |...+.++++.. T Consensus 425 ~~~~aE~~S~~~ 436 (618) T 3ce2_A 425 PIFLAEIASTLN 436 (618) T ss_dssp CGGGTTHHHHHH T ss_pred CCHHHHHHHHHH T ss_conf 708999977667 No 191 >3ahn_A Oligopeptidase, PZ peptidase A; hydrolase; HET: 3A1; 1.80A {Geobacillus SP} PDB: 3ahm_A* 2h1n_A 2h1j_A Probab=60.50 E-value=3.2 Score=19.71 Aligned_cols=12 Identities=17% Similarity=0.002 Sum_probs=5.9 Q ss_pred CCCCCEEEEECC Q ss_conf 145662888878 Q gi|254780773|r 136 VKKGDCIISLDG 147 (349) Q Consensus 136 L~~GD~Il~InG 147 (349) ++++|.-..++. T Consensus 264 l~~wD~~~~~~~ 275 (564) T 3ahn_A 264 LKYYDEAFVFPT 275 (564) T ss_dssp CCTTTTTCCCTT T ss_pred HHHCCCCCCCCC T ss_conf 322234477851 No 192 >3lq0_A Proastacin; metallopeptidase, zymogen activation, proenzyme, protease, Z disulfide bond, hydrolase, metal-binding, metalloprotease,; 1.45A {Astacus astacus} PDB: 1iab_A 1iaa_A 1ast_A 1iac_A 1iad_A 1iae_A 1qji_A* 1qjj_A Probab=59.31 E-value=3 Score=19.95 Aligned_cols=14 Identities=29% Similarity=0.299 Sum_probs=6.0 Q ss_pred HCCCCCEEEEECCC Q ss_conf 01456628888783 Q gi|254780773|r 135 GVKKGDCIISLDGI 148 (349) Q Consensus 135 GL~~GD~Il~InG~ 148 (349) |-+.|-.-+++++. T Consensus 103 G~~gg~Q~vsl~~~ 116 (235) T 3lq0_A 103 GRISGAQQVSLQAN 116 (235) T ss_dssp SCCSSEEEEEECTT T ss_pred CCCCCCEEEEECCC T ss_conf 50188145882799 No 193 >1l6j_A Matrix metalloproteinase-9; twisted beta sheet flanked by helices, hydrolase; 2.50A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 Probab=58.08 E-value=3.2 Score=19.72 Aligned_cols=31 Identities=10% Similarity=0.125 Sum_probs=14.1 Q ss_pred HHHHCCE-EEEEEEECCCHHEEEEECCCEEEEEEE Q ss_conf 9984975-004553068311278605980799997 Q gi|254780773|r 29 ARLCNIR-VLSFSVGFGPELIGITSRSGVRWKVSL 62 (349) Q Consensus 29 Ar~~gv~-V~~FsiGfgp~l~~~~~k~~t~y~i~~ 62 (349) ..+|||. |.+++..-|.. +|+ |....|++.- T Consensus 77 ~PRCGvpD~~~~~~~~~~~--kW~-k~~lTy~i~n 108 (425) T 1l6j_A 77 TPRCGVPDLGRFQTFEGDL--KWH-HHNITYWIQN 108 (425) T ss_dssp SCBCSSCSSSCSSCCSSCS--SCC-SSEEEEEECC T ss_pred CCCCCCCCCCCCCCCCCCC--CCC-CCCCEEEEEC T ss_conf 8988998733234567899--876-7884389850 No 194 >3lqb_A Hatching enzyme, LOC792177 protein; hydrolase, metalloprotease, astacin, metal- protease; 1.10A {Danio rerio} Probab=57.84 E-value=3.3 Score=19.67 Aligned_cols=15 Identities=27% Similarity=0.499 Sum_probs=9.1 Q ss_pred HHHHCCCCCEEEEEC Q ss_conf 530014566288887 Q gi|254780773|r 132 AIAGVKKGDCIISLD 146 (349) Q Consensus 132 ~~AGL~~GD~Il~In 146 (349) ...|-+.|...+++. T Consensus 73 S~VG~~~g~Q~i~l~ 87 (199) T 3lqb_A 73 SAIGRTGGKQVVSLN 87 (199) T ss_dssp ECSSCCSSEEEEEEC T ss_pred ECCCCCCCCEEEEEC T ss_conf 536711894269979 No 195 >1gyt_A Cytosol aminopeptidase; hydrolase, DNA recombination; 2.5A {Escherichia coli} SCOP: c.56.5.3 c.50.1.1 Probab=53.19 E-value=2.1 Score=20.99 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=16.8 Q ss_pred CCCCHHHHHHCCCCCEEEEECCCCCC Q ss_conf 56755653001456628888783045 Q gi|254780773|r 126 SPASPAAIAGVKKGDCIISLDGITVS 151 (349) Q Consensus 126 ~~~spA~~AGL~~GD~Il~InG~~V~ 151 (349) .+|+|...| .+|||+|++-||+.|+ T Consensus 323 ~EN~~~~~a-~~pgDvi~~~~Gktve 347 (503) T 1gyt_A 323 CENMPGGRA-YRPGDVLTTMSGQTVE 347 (503) T ss_dssp EEECCSTTC-CCTTCEEECTTSCEEE T ss_pred HHCCCCCCC-CCCCCEEEECCCCEEE T ss_conf 012778889-9898867816997899 No 196 >2o36_A ThiMet oligopeptidase; thermolysin-like domain, substrate-binding channel, hydrolase; 1.95A {Homo sapiens} PDB: 1s4b_P Probab=52.84 E-value=5.6 Score=18.05 Aligned_cols=20 Identities=15% Similarity=0.194 Sum_probs=9.5 Q ss_pred HHHHHHHHHHHHHCCCCCHH Q ss_conf 36999999988827869999 Q gi|254780773|r 300 GGHLITFLLEMIRGKSLGVS 319 (349) Q Consensus 300 GG~i~~~~~E~i~gr~i~~~ 319 (349) |++=...++|..+||+++.. T Consensus 635 gs~~~~e~~~~flGr~p~~~ 654 (674) T 2o36_A 635 GSEDASAMLRRFLGRDPKQD 654 (674) T ss_dssp GGSCHHHHHHHHHSSCCCSH T ss_pred CCCCHHHHHHHHCCCCCCHH T ss_conf 98289999998359999816 No 197 >2qr4_A Peptidase M3B, oligoendopeptidase F; structural genomics, PSI-2, protein structure initiative; 2.50A {Enterococcus faecium DO} Probab=51.99 E-value=6.9 Score=17.42 Aligned_cols=13 Identities=23% Similarity=0.215 Sum_probs=5.3 Q ss_pred CCHHHHHHHHHHH Q ss_conf 3012233345653 Q gi|254780773|r 258 PVGIARIAKNFFD 270 (349) Q Consensus 258 PVgIa~~~~~~a~ 270 (349) |...+.+.++..+ T Consensus 392 ~~d~vE~pSq~~E 404 (587) T 2qr4_A 392 SIFLAEIASTTNE 404 (587) T ss_dssp -CHHHHHHHHHHH T ss_pred CHHHHHHHHHHHH T ss_conf 6378779899999 No 198 >3nxq_A Angiotensin-converting enzyme; dicarboxy zinc metallopeptidase, hydrolase, hydrolase-hydrol inhibitor complex; HET: RX4 NAG FUC BMA P6G PG4; 1.99A {Homo sapiens} PDB: 2c6n_A* 2c6f_A* Probab=51.04 E-value=5.7 Score=17.99 Aligned_cols=10 Identities=20% Similarity=0.428 Sum_probs=3.5 Q ss_pred CCCHHHHHHC Q ss_conf 5400111110 Q gi|254780773|r 151 SAFEEVAPYV 160 (349) Q Consensus 151 ~s~~dl~~~i 160 (349) ..|+...+.. T Consensus 259 ~~w~~~~~l~ 268 (629) T 3nxq_A 259 QSWENIYDMV 268 (629) T ss_dssp CCCGGGHHHH T ss_pred CCCCCCCCCC T ss_conf 0000003445 No 199 >3jru_B Probable cytosol aminopeptidase; bacterial blight, XOO0834, PEPA, xanthomonas oryzae PV. ORYZ KACC10331, hydrolase, manganese; 2.60A {Xanthomonas oryzae PV} Probab=49.58 E-value=2.6 Score=20.36 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=19.8 Q ss_pred CCCCCCHHHHHHCCCCCEEEEECCCCCC Q ss_conf 2456755653001456628888783045 Q gi|254780773|r 124 NVSPASPAAIAGVKKGDCIISLDGITVS 151 (349) Q Consensus 124 ~V~~~spA~~AGL~~GD~Il~InG~~V~ 151 (349) ...+|.|...| .+|||+|++-||+.|+ T Consensus 313 ~~~EN~~~~~a-~~pgDvi~~~~GktvE 339 (490) T 3jru_B 313 PAVENAIDGNA-YRPSDVITSMSGKTIE 339 (490) T ss_dssp EEEEECCSTTC-CCTTCEEECTTSCEEE T ss_pred EHHHCCCCCCC-CCCCCEEECCCCCEEE T ss_conf 50123778888-8998854626896554 No 200 >2x96_A Angiotensin converting enzyme; hydrolase, ACE inhibitor, zinc metallopeptidase; HET: RX3 EPE NAG BMA MAN; 1.85A {Drosophila melanogaster} PDB: 2x8z_A* 2x90_A* 2x91_A* 2x8y_A* 2x97_A* 2xhm_A* 2x94_A* 2x92_A* 2x93_A* 2x95_A* 1j36_A* 1j37_A* 1j38_A Probab=47.11 E-value=7.2 Score=17.31 Aligned_cols=19 Identities=5% Similarity=-0.164 Sum_probs=7.5 Q ss_pred CCCCCCHHHHHHHHHHHHH Q ss_conf 6472243699999998882 Q gi|254780773|r 294 PIPILDGGHLITFLLEMIR 312 (349) Q Consensus 294 Pip~LDGG~i~~~~~E~i~ 312 (349) +++|-|--.....+.+... T Consensus 443 ~~~~~~~~~~w~~l~~~~~ 461 (598) T 2x96_A 443 EVDKANWNCAFWKLRDEYS 461 (598) T ss_dssp CSCGGGHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHC T ss_conf 9998999999999999856 No 201 >3h8g_F Cytosol aminopeptidase; cytoplasm, hydrolase, manganese, metal-bindi protease; HET: BES; 1.50A {Pseudomonas putida} PDB: 3h8e_A 3h8f_A* Probab=46.48 E-value=2.9 Score=20.04 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=16.6 Q ss_pred CCCCHHHHHHCCCCCEEEEECCCCCC Q ss_conf 56755653001456628888783045 Q gi|254780773|r 126 SPASPAAIAGVKKGDCIISLDGITVS 151 (349) Q Consensus 126 ~~~spA~~AGL~~GD~Il~InG~~V~ 151 (349) .+|.|...| .+|||+|.+-||+.|+ T Consensus 320 ~eN~~~~~a-~~pgdvi~~~~G~tve 344 (497) T 3h8g_F 320 AENMPSGGA-TRPGDIVTTMSGQTVE 344 (497) T ss_dssp EEECCSTTS-CCTTEEEECTTSCEEE T ss_pred EECCCCCCC-CCCCCEEECCCCCEEE T ss_conf 202778888-8999832768998898 No 202 >1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, biosynthetic protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2 Probab=45.44 E-value=13 Score=15.61 Aligned_cols=45 Identities=16% Similarity=0.234 Sum_probs=29.8 Q ss_pred HHHCCCCCEEEEECCCCCCCCH---HHHHHCCCCCCCCCEEEEEECCC Q ss_conf 3001456628888783045400---11111014678863169996587 Q gi|254780773|r 133 IAGVKKGDCIISLDGITVSAFE---EVAPYVRENPLHEISLVLYREHV 177 (349) Q Consensus 133 ~AGL~~GD~Il~InG~~V~s~~---dl~~~i~~~~g~~v~i~v~R~~~ 177 (349) .+|=..|..++.+||++.+--+ .+.++++...-++-.+.++.|++ T Consensus 13 ~~g~~~g~~~I~vNGk~~~~~~~~~Tl~~LL~~l~~~~~~vAVevN~e 60 (87) T 1tyg_B 13 SSGHIGGRHMLQLNGKDVKWKKDTGTIQDLLASYQLENKIVIVERNKE 60 (87) T ss_dssp ---------CEEETTEEECCSSSCCBHHHHHHHTTCTTSCCEEEETTE T ss_pred CCCCCCCEEEEEECCEEEECCCCCCCHHHHHHHCCCCCCEEEEEECCE T ss_conf 255518819999999898868888639999987699998599999999 No 203 >3ij3_A Cytosol aminopeptidase; PEPB, peptidase M17 family, IDP01962, cytoplasm, hydrolase, manganese, metal-binding, protease, structural genomics; HET: PGE PG4; 1.80A {Coxiella burnetii} Probab=44.95 E-value=3.5 Score=19.50 Aligned_cols=28 Identities=11% Similarity=0.116 Sum_probs=21.2 Q ss_pred CCCCCCCHHHHHHCCCCCEEEEECCCCCC Q ss_conf 02456755653001456628888783045 Q gi|254780773|r 123 SNVSPASPAAIAGVKKGDCIISLDGITVS 151 (349) Q Consensus 123 ~~V~~~spA~~AGL~~GD~Il~InG~~V~ 151 (349) --..+|+|...| .+|||+|.+-||+.|+ T Consensus 300 ~p~~EN~~~~~a-~rPgDVi~~~~G~tvE 327 (482) T 3ij3_A 300 IPAVENAIGSRS-YRPGDVVQTRARKTIE 327 (482) T ss_dssp EEEEEECCSTTC-CCTTCEEECTTSCEEE T ss_pred EEHHHCCCCCCC-CCCCCEEECCCCCEEE T ss_conf 852532889888-8898867846886755 No 204 >3khi_A Putative metal-dependent hydrolase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.95A {Klebsiella pneumoniae subsp} PDB: 3dl1_A Probab=43.56 E-value=7.6 Score=17.17 Aligned_cols=15 Identities=13% Similarity=0.220 Sum_probs=9.9 Q ss_pred CCCCCCCCHHHHHHC Q ss_conf 783045400111110 Q gi|254780773|r 146 DGITVSAFEEVAPYV 160 (349) Q Consensus 146 nG~~V~s~~dl~~~i 160 (349) +|.-|-||+|+..-. T Consensus 126 ~G~VvLSW~dv~~g~ 140 (267) T 3khi_A 126 QGPVVLNWLDIQDSF 140 (267) T ss_dssp CSCEEEEHHHHHHHT T ss_pred CCEEEEEHHHHHHCC T ss_conf 980898879965104 No 205 >3dte_A IRRE protein; radiotolerance, gene regulation, metallopeptidase; 2.60A {Deinococcus deserti} PDB: 3dti_A 3dtk_A Probab=43.11 E-value=7.8 Score=17.09 Aligned_cols=11 Identities=27% Similarity=0.498 Sum_probs=5.1 Q ss_pred HHHHHHHHHHH Q ss_conf 97337799999 Q gi|254780773|r 20 IHEFGHYMVAR 30 (349) Q Consensus 20 iHE~GH~~~Ar 30 (349) -||+||++.-+ T Consensus 101 AHELgH~~Lh~ 111 (301) T 3dte_A 101 AHEISHALLLG 111 (301) T ss_dssp HHHHHHHHHHH T ss_pred HHHHHHHHHHC T ss_conf 99999999604 No 206 >3kr4_A M17 leucyl aminopeptidase; protease, hydrolase; HET: BES 1PE; 2.00A {Plasmodium falciparum} PDB: 3kqz_A* 3kqx_A* 3kr5_A* Probab=42.55 E-value=3.9 Score=19.12 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=21.8 Q ss_pred CCCCCCCHHHHHHCCCCCEEEEECCCCCC Q ss_conf 02456755653001456628888783045 Q gi|254780773|r 123 SNVSPASPAAIAGVKKGDCIISLDGITVS 151 (349) Q Consensus 123 ~~V~~~spA~~AGL~~GD~Il~InG~~V~ 151 (349) ....+|.|...| .+|||+|.+-||+.|+ T Consensus 344 ~~~~EN~~~~~a-~~pgDVi~~~~GkTvE 371 (528) T 3kr4_A 344 SAVCENMVSKNS-YRPGDIITASNGKTIE 371 (528) T ss_dssp EEEEEECCSTTS-CCTTCEEECTTSCEEE T ss_pred EHHHHHCCCCCC-CCCCCEEECCCCCEEE T ss_conf 335440679988-7899832616996798 No 207 >3kzw_A Cytosol aminopeptidase; cytoplasm, hydrolase, manganese, metal-binding, protease, structural genomics; 2.70A {Staphylococcus aureus subsp} Probab=42.12 E-value=3.9 Score=19.12 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=19.6 Q ss_pred CCCCCHHHHHHCCCCCEEEEECCCCCC Q ss_conf 456755653001456628888783045 Q gi|254780773|r 125 VSPASPAAIAGVKKGDCIISLDGITVS 151 (349) Q Consensus 125 V~~~spA~~AGL~~GD~Il~InG~~V~ 151 (349) ..+|.|...| .+|||+|.+-||+.|+ T Consensus 335 ~~eN~~~~~a-~~pgdvi~~~~GktvE 360 (515) T 3kzw_A 335 CAENMINEAS-MKPDDVFTALSGETVE 360 (515) T ss_dssp EEEECCCTTC-CCTTCEEECTTSCEEE T ss_pred HHHCCCCCCC-CCCCCEEECCCCCEEE T ss_conf 1120788888-8899867817998899 No 208 >1lam_A Leucine aminopeptidase; exopeptidase, metallopeptidase, hydrolase (alpha-aminoacylpeptide); 1.60A {Bos taurus} SCOP: c.56.5.3 c.50.1.1 PDB: 1lan_A 1lcp_A* 1lap_A 1bpn_A 1bpm_A 1bll_E 2j9a_A* 2ewb_A* Probab=41.64 E-value=3.8 Score=19.21 Aligned_cols=27 Identities=26% Similarity=0.397 Sum_probs=19.3 Q ss_pred CCCCCCHHHHHHCCCCCEEEEECCCCCC Q ss_conf 2456755653001456628888783045 Q gi|254780773|r 124 NVSPASPAAIAGVKKGDCIISLDGITVS 151 (349) Q Consensus 124 ~V~~~spA~~AGL~~GD~Il~InG~~V~ 151 (349) ...+|+|...| .+|||+|.+-||+.|+ T Consensus 301 ~~~eN~~~~~a-~~pgDvi~~~~G~tvE 327 (484) T 1lam_A 301 PLCENMPSGKA-NKPGDVVRARNGKTIQ 327 (484) T ss_dssp EEEEECCSTTS-CCTTEEEECTTSCEEE T ss_pred EEEECCCCCCC-CCCCCEEECCCCCEEE T ss_conf 73523678888-8899778846995423 No 209 >1uze_A Angiotensin converting enzyme; metalloprotease, inhibitor, enalaprilat, zinc dependant peptidase, anti-hypertensive drug; HET: EAL; 1.82A {Homo sapiens} SCOP: d.92.1.5 PDB: 1o8a_A* 1o86_A* 1uzf_A* 2oc2_A* 2iux_A* 2iul_A* 3bkk_A* 3bkl_A* 3l3n_A* Probab=41.63 E-value=9.9 Score=16.37 Aligned_cols=17 Identities=12% Similarity=0.202 Sum_probs=7.9 Q ss_pred CCCCCCHHHHHHCCCCC Q ss_conf 30454001111101467 Q gi|254780773|r 148 ITVSAFEEVAPYVRENP 164 (349) Q Consensus 148 ~~V~s~~dl~~~i~~~~ 164 (349) .....|+...+.....| T Consensus 242 ~~~~~wd~~~~l~~~~p 258 (589) T 1uze_A 242 MWAQTWSNIYDLVVPFP 258 (589) T ss_dssp TTSSCCGGGHHHHCSCT T ss_pred HHHCCCCCCCCCCCCCC T ss_conf 65257420046556776 No 210 >2hc9_A Leucine aminopeptidase 1; zinc, carbonate, structural genomics, PSI, protein structure initiative; 1.85A {Caenorhabditis elegans} PDB: 2hb6_A Probab=39.27 E-value=4.7 Score=18.57 Aligned_cols=29 Identities=31% Similarity=0.277 Sum_probs=23.3 Q ss_pred CCCCCCCCHHHHHHCCCCCEEEEECCCCCC Q ss_conf 002456755653001456628888783045 Q gi|254780773|r 122 VSNVSPASPAAIAGVKKGDCIISLDGITVS 151 (349) Q Consensus 122 I~~V~~~spA~~AGL~~GD~Il~InG~~V~ 151 (349) +--..+|.|...| .+|||+|.+-||+.|+ T Consensus 301 ilpl~EN~ig~~A-~rPgDVit~~nGkTVE 329 (491) T 2hc9_A 301 CLCIVENNVSPIA-NKPDDIIKMLSGKTVE 329 (491) T ss_dssp EEEEEEECCSTTS-CCTTCEEECTTSCEEE T ss_pred EEEEEECCCCCCC-CCCCCEEECCCCCEEE T ss_conf 9877635778888-8888877868997777 No 211 >3hoa_A Thermostable carboxypeptidase 1; proline-rich loop, hydrolase; 2.10A {Thermus thermophilus HB27} PDB: 1wgz_A Probab=37.47 E-value=14 Score=15.42 Aligned_cols=15 Identities=20% Similarity=0.388 Sum_probs=10.4 Q ss_pred HHHHHHHHCCCCCHH Q ss_conf 999988827869999 Q gi|254780773|r 305 TFLLEMIRGKSLGVS 319 (349) Q Consensus 305 ~~~~E~i~gr~i~~~ 319 (349) -.++|.++|++++++ T Consensus 481 ~eLi~~~tGe~l~~~ 495 (509) T 3hoa_A 481 RVLVERVTGEAPSAR 495 (509) T ss_dssp HHHHHHHHSSCCCSH T ss_pred HHHHHHHHCCCCCHH T ss_conf 999999849999879 No 212 >3dor_A Protein CT_858, CPAF; mature CPAF, dimer, transferase; 2.20A {Chlamydia trachomatis} PDB: 3dpm_A* 3dpn_A 3dja_A Probab=34.81 E-value=9.7 Score=16.43 Aligned_cols=21 Identities=24% Similarity=0.517 Sum_probs=14.0 Q ss_pred HHHCCCCCEEEEECCCCCCCC Q ss_conf 300145662888878304540 Q gi|254780773|r 133 IAGVKKGDCIISLDGITVSAF 153 (349) Q Consensus 133 ~AGL~~GD~Il~InG~~V~s~ 153 (349) ..++++|++|++|||+++..| T Consensus 107 ~~~~~~gs~I~sING~~~~~~ 127 (583) T 3dor_A 107 SSEIRVGDELLEVDGAPVQDV 127 (583) T ss_dssp CCSSCTTCEEEEETTEEHHHH T ss_pred CCCCCCCCEEEEECCCCHHHH T ss_conf 002468975788989599999 No 213 >3dwc_A TCMCP-1, metallocarboxypeptidase; cowrin family of metallocarboxypeptidases, hydrolase; 2.10A {Trypanosoma cruzi} Probab=34.43 E-value=16 Score=14.88 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=11.8 Q ss_pred HHHHHHHHCCCCCHHH Q ss_conf 9999888278699999 Q gi|254780773|r 305 TFLLEMIRGKSLGVSV 320 (349) Q Consensus 305 ~~~~E~i~gr~i~~~~ 320 (349) -.++|.++||+++.+. T Consensus 476 ~ell~~~tG~~~~~~~ 491 (505) T 3dwc_A 476 DELLRQATGETLNPEH 491 (505) T ss_dssp HHHHHHHHSSSCCTHH T ss_pred HHHHHHHHCCCCCHHH T ss_conf 9999997599998699 No 214 >1ka2_A M32 carboxypeptidase; hexxh motif, M32 family, metallopeptidase; 2.20A {Pyrococcus furiosus} SCOP: d.92.1.5 PDB: 1k9x_A 1ka4_A Probab=34.17 E-value=16 Score=14.84 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=10.7 Q ss_pred HHHHHHHHCCCCCHHH Q ss_conf 9999888278699999 Q gi|254780773|r 305 TFLLEMIRGKSLGVSV 320 (349) Q Consensus 305 ~~~~E~i~gr~i~~~~ 320 (349) ..++|.++|++++++. T Consensus 474 ~ell~~~TGe~l~~~~ 489 (499) T 1ka2_A 474 KELLKKAIGEDMDAEY 489 (499) T ss_dssp HHHHHHHHSSCCCTHH T ss_pred HHHHHHHHCCCCCHHH T ss_conf 9999998689999899 No 215 >1sat_A Serratia protease; parallel beta helix, parallel beta roll, hydrolase (serine protease); 1.75A {Serratia marcescens} SCOP: b.80.7.1 d.92.1.6 PDB: 1af0_A 1smp_A 1srp_A Probab=33.99 E-value=18 Score=14.57 Aligned_cols=13 Identities=31% Similarity=0.373 Sum_probs=9.3 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999997337799 Q gi|254780773|r 15 IIIVVIHEFGHYM 27 (349) Q Consensus 15 ~~~v~iHE~GH~~ 27 (349) ...+.+||.||.+ T Consensus 170 g~~t~~HEIGHAL 182 (471) T 1sat_A 170 GRQTFTHEIGHAL 182 (471) T ss_dssp HHHHHHHHHHHHH T ss_pred CCCCCCCCCCCCC T ss_conf 5302033002334 No 216 >3hq2_A Bacillus subtilis M32 carboxypeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc; 2.90A {Bacillus subtilis} Probab=33.08 E-value=18 Score=14.64 Aligned_cols=16 Identities=19% Similarity=0.241 Sum_probs=12.0 Q ss_pred HHHHHHHHCCCCCHHH Q ss_conf 9999888278699999 Q gi|254780773|r 305 TFLLEMIRGKSLGVSV 320 (349) Q Consensus 305 ~~~~E~i~gr~i~~~~ 320 (349) -.++|.++|++++.+. T Consensus 471 ~el~~~~tGe~l~~~~ 486 (501) T 3hq2_A 471 LDIIKDATGEELNVRY 486 (501) T ss_dssp HHHHHHHHSSSCCHHH T ss_pred HHHHHHHHCCCCCHHH T ss_conf 9999998599999899 No 217 >1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1 Probab=29.70 E-value=22 Score=13.98 Aligned_cols=25 Identities=20% Similarity=0.403 Sum_probs=14.9 Q ss_pred HHHCCCCCEEEEECCCCCCCCHHHH Q ss_conf 3001456628888783045400111 Q gi|254780773|r 133 IAGVKKGDCIISLDGITVSAFEEVA 157 (349) Q Consensus 133 ~AGL~~GD~Il~InG~~V~s~~dl~ 157 (349) ..-|+.||++.+.|+..-....... T Consensus 18 I~dl~~GD~V~~~d~~~~~~~~~~~ 42 (145) T 1at0_A 18 LGELSIGDRVLSMTANGQAVYSEVI 42 (145) T ss_dssp GGGCCTTCEEEEECTTSCEEEEEEE T ss_pred HHHCCCCCEEEEEECCCCEEEEEEE T ss_conf 1542689999997079958888999 No 218 >3o0w_A Calreticulin; jelly roll fold, chaperone, carbohydrate binding, calcium BI; HET: MAN GLC; 1.95A {Mus musculus} PDB: 3o0v_A* 3o0x_A* Probab=23.70 E-value=25 Score=13.56 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=9.0 Q ss_pred CCEEECCCCCCCHHHHCCCCC Q ss_conf 211100124455066503684 Q gi|254780773|r 66 GGYVSFSEDEKDMRSFFCAAP 86 (349) Q Consensus 66 GgyV~~~~~e~~~~~f~~~~~ 86 (349) |||+|+-+++.++..|...++ T Consensus 93 GaYiKLl~~~~~~~~f~~~Tp 113 (273) T 3o0w_A 93 GGYVKLFPSGLDQKDMHGDSE 113 (273) T ss_dssp ECCEEEECTTCCGGGCCTTSC T ss_pred CEEEEECCCCCCHHHCCCCCC T ss_conf 258870377687645478987 No 219 >3ik0_A TS, tsase, thymidylate synthase; transferase, nucleotide synthase, methyltransferase, nucleot biosynthesis; HET: 7C1 UMP; 2.10A {Lactobacillus casei} PDB: 1lcb_A* 1lce_A* 1lca_A* 1thy_A* 1tsl_A* 1tsm_A* 2tdm_A* 3bnz_A* 3byx_A* 3bz0_A* 3c06_A* 3c0a_A* 1nje_A* 3ijz_A* 3ik1_A* 4tms_A 1tsy_A* 1tsz_A 1tdb_A* 1tda_A* ... Probab=22.23 E-value=30 Score=13.04 Aligned_cols=45 Identities=16% Similarity=0.296 Sum_probs=27.0 Q ss_pred HHHHHCCCCCEEEEECCCCCCC--CHHHHHHCCCCCCCCCEEEEEEC Q ss_conf 6530014566288887830454--00111110146788631699965 Q gi|254780773|r 131 AAIAGVKKGDCIISLDGITVSA--FEEVAPYVRENPLHEISLVLYRE 175 (349) Q Consensus 131 A~~AGL~~GD~Il~InG~~V~s--~~dl~~~i~~~~g~~v~i~v~R~ 175 (349) |...|+++|+.+..+.+..|.+ ++.+.+.++..|-..-++.+.++ T Consensus 241 A~~~gl~~G~~~~~~gd~HIY~~h~~~v~~qL~R~p~~~P~l~i~~~ 287 (316) T 3ik0_A 241 AHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPD 287 (316) T ss_dssp HHHHTCEEEEEEEEEEEEEEETTSHHHHHHHTTSCCCCCCEEEECTT T ss_pred HHHCCCCCCEEEEEEEEEEEEHHHHHHHHHHHCCCCCCCCEEEECCC T ss_conf 98609830448996103586274799999984779999985797999 No 220 >2g8o_A TS, tsase, thymidylate synthase; methyltransferase, DUMP, antifolate, high-resolution, ternary complex, beta sheet, alpha/beta protein; HET: CXM UMP CB3; 1.30A {Escherichia coli} SCOP: d.117.1.1 PDB: 1aob_A* 1f4c_A* 1f4e_A* 1f4f_A* 1jtq_A* 1jtu_A* 1jut_A* 1kce_A* 1kzi_A* 1tls_A* 1tsn_A* 1f4b_A* 2bbq_A* 2ftq_A* 2a9w_A* 2kce_A* 3b9h_A* 3bhl_A* 3bhr_A* 3tms_A ... Probab=20.02 E-value=33 Score=12.73 Aligned_cols=47 Identities=13% Similarity=0.177 Sum_probs=27.3 Q ss_pred HHHHHHCCCCCEEEEECCCCCCC--CHHHHHHCCCCCCCCCEEEEEECC Q ss_conf 56530014566288887830454--001111101467886316999658 Q gi|254780773|r 130 PAAIAGVKKGDCIISLDGITVSA--FEEVAPYVRENPLHEISLVLYREH 176 (349) Q Consensus 130 pA~~AGL~~GD~Il~InG~~V~s--~~dl~~~i~~~~g~~v~i~v~R~~ 176 (349) -|...|+++|+-+-.+.+.-|.+ ++++.+.++..|-..-++.+.++- T Consensus 188 iA~~~gl~~G~~~~~~gd~HIY~~h~~~v~~ql~r~p~~~P~l~i~~~~ 236 (264) T 2g8o_A 188 MAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIKRKP 236 (264) T ss_dssp HHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHHHTSCCCCCCEEEECCCC T ss_pred HHHHHCCCCCEEEEECCEEEEEHHHHHHHHHHHCCCCCCCCEEEECCCC T ss_conf 9998707564589850305864646899999837799999877968997 Done!