RPSBLAST alignment of GI: 254780773 and protein with PDBid: 1lcy
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, IAP-binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1 Length = 325
Score = 52.6 bits (125), Expect = 1e-07
Identities = 27/130 (20%), Positives = 52/130 (40%), Gaps = 3/130 (2%)
Query: 47 LIGITSRSGVRWKVSLIPLGGYVSFSED-EKDMRSFFCAAPWKKILTVLAGPLANCVMAI 105
+IG+ + IP F EK S + ++ + V+ L+ ++A
Sbjct: 184 VIGVNTMKVTAGISFAIPSDRLREFLHRGEKKNSSSGISGSQRRYIGVMMLTLSPSILAE 243
Query: 106 LFFTFFFYNTGVMKPVVSNVSPASPAAIAGVKKGDCIISLDGITVSAFEEVAPYVRENPL 165
L + ++ V SPA AG++ GD I+++ V E+V VR
Sbjct: 244 LQLREPSFPDVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNAEDVYEAVRTQS- 302
Query: 166 HEISLVLYRE 175
++++ + R
Sbjct: 303 -QLAVQIRRG 311