BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780773|ref|YP_003065186.1| zinc metallopeptidase
[Candidatus Liberibacter asiaticus str. psy62]
(349 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780773|ref|YP_003065186.1| zinc metallopeptidase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 349
Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/349 (100%), Positives = 349/349 (100%)
Query: 1 MFWLDCFLLYTVSLIIIVVIHEFGHYMVARLCNIRVLSFSVGFGPELIGITSRSGVRWKV 60
MFWLDCFLLYTVSLIIIVVIHEFGHYMVARLCNIRVLSFSVGFGPELIGITSRSGVRWKV
Sbjct: 1 MFWLDCFLLYTVSLIIIVVIHEFGHYMVARLCNIRVLSFSVGFGPELIGITSRSGVRWKV 60
Query: 61 SLIPLGGYVSFSEDEKDMRSFFCAAPWKKILTVLAGPLANCVMAILFFTFFFYNTGVMKP 120
SLIPLGGYVSFSEDEKDMRSFFCAAPWKKILTVLAGPLANCVMAILFFTFFFYNTGVMKP
Sbjct: 61 SLIPLGGYVSFSEDEKDMRSFFCAAPWKKILTVLAGPLANCVMAILFFTFFFYNTGVMKP 120
Query: 121 VVSNVSPASPAAIAGVKKGDCIISLDGITVSAFEEVAPYVRENPLHEISLVLYREHVGVL 180
VVSNVSPASPAAIAGVKKGDCIISLDGITVSAFEEVAPYVRENPLHEISLVLYREHVGVL
Sbjct: 121 VVSNVSPASPAAIAGVKKGDCIISLDGITVSAFEEVAPYVRENPLHEISLVLYREHVGVL 180
Query: 181 HLKVMPRLQDTVDRFGIKRQVPSVGISFSYDETKLHSRTVLQSFSRGLDEISSITRGFLG 240
HLKVMPRLQDTVDRFGIKRQVPSVGISFSYDETKLHSRTVLQSFSRGLDEISSITRGFLG
Sbjct: 181 HLKVMPRLQDTVDRFGIKRQVPSVGISFSYDETKLHSRTVLQSFSRGLDEISSITRGFLG 240
Query: 241 VLSSAFGKDTRLNQISGPVGIARIAKNFFDHGFNAYIAFLAMFSWAIGFMNLLPIPILDG 300
VLSSAFGKDTRLNQISGPVGIARIAKNFFDHGFNAYIAFLAMFSWAIGFMNLLPIPILDG
Sbjct: 241 VLSSAFGKDTRLNQISGPVGIARIAKNFFDHGFNAYIAFLAMFSWAIGFMNLLPIPILDG 300
Query: 301 GHLITFLLEMIRGKSLGVSVTRVITRMGLCIILFLFFLGIRNDIYGLMQ 349
GHLITFLLEMIRGKSLGVSVTRVITRMGLCIILFLFFLGIRNDIYGLMQ
Sbjct: 301 GHLITFLLEMIRGKSLGVSVTRVITRMGLCIILFLFFLGIRNDIYGLMQ 349
>gi|254780700|ref|YP_003065113.1| serine protease DO-like protease [Candidatus Liberibacter asiaticus
str. psy62]
Length = 489
Score = 30.4 bits (67), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 116 GVMKPVVSNVSPASPAAIAGVKKGDCIISLDGITVSAFEE-VAPYVRENPLHEISLVLYR 174
G +++ V SPA AG+K GD I LDG + + ++ V +P ++ + L +
Sbjct: 304 GTKGSLITAVVKESPADKAGMKVGDVICMLDGRIIKSHQDFVWQIASRSPKEQVKISLCK 363
Query: 175 E 175
E
Sbjct: 364 E 364
>gi|254781091|ref|YP_003065504.1| putative pyridoxal-phosphate-dependent aminotransferase protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 383
Score = 27.7 bits (60), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 28/170 (16%)
Query: 138 KGDCIISLDGITVSAFEEVAPYVREN-PLHEISLVLYREHVGVLHLKVMPRLQDTVDRFG 196
+G IS+D + +SA E A Y + P H+I + G++ ++ L D +++
Sbjct: 85 QGSHKISIDSLYISAIEHPAVYAGGHFPSHKIHKIPVLSK-GIVDIQA---LTDFLEQRN 140
Query: 197 IKRQVPSVGISFSYDETKLHSRTVLQSFSRGLDEISSITRGFLGVL-SSAFGKDTRLNQI 255
+P + + F +ET V+Q + EI+ I + + G+L A R+
Sbjct: 141 STCGIPMIAVMFVNNET-----GVIQP----IKEIAQIVKEYQGILVVDAVQAAGRI--- 188
Query: 256 SGPVGIARIAKNFF---DHGFNAYIAFLAM-FSWAIGFMNLLPIPILDGG 301
P+ I I +F H A + A+ F I LLP P+L GG
Sbjct: 189 --PLSIEEIKADFLIISSHKLGAPVGAGALVFREDI----LLPSPLLRGG 232
>gi|254780617|ref|YP_003065030.1| F0F1 ATP synthase subunit alpha [Candidatus Liberibacter asiaticus
str. psy62]
Length = 509
Score = 25.8 bits (55), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/77 (20%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 216 HSRTVLQSFSRGLDEISSITRGFLGVLSSAFGKDTRLNQISGPVGIARIAKNFFDHGFNA 275
R+ + F + L++ +++ + V S++ D Q+ P + + F D+G++A
Sbjct: 208 QKRSSVARFVKALEDRGALSYSIVVVASAS---DPAPMQLLAPFAGCAMGEYFRDNGYHA 264
Query: 276 YIAFLAMFSWAIGFMNL 292
IA+ + A+ + L
Sbjct: 265 LIAYDDLQKHAVAYRQL 281
>gi|254780716|ref|YP_003065129.1| 6-phosphogluconate dehydrogenase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 475
Score = 24.3 bits (51), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 77/197 (39%), Gaps = 32/197 (16%)
Query: 71 FSEDEKDMRSFFCAAPW--KKILTVLAGPLANCVMA--ILFFTFFFYNTGVMKPVVSNVS 126
+ ++ K M+SFF + K L N + A IL FT F+ G S
Sbjct: 294 YRDESKKMQSFFNPSSHFPLKCFDSFVKDLENALYASTILSFTQGFWVIGKSSEKYS--W 351
Query: 127 PASPAAIAGVKKGDCIISLDGITVSAFEEVAPYVRENP--LHEISLVLYREHVGVLHLKV 184
S A IA + + CII ++ + E+P + +++ E V K
Sbjct: 352 SLSLATIARIWRAGCII-----RSQILNDIVKSLTEDPSSTNLLNIPSISEKVK----KT 402
Query: 185 MPRLQD---TVDRFGIKRQVPSVGISFSYDETKLHSRTVLQSFSRGLDEISSITRGFLGV 241
+P L+ T G VPS+ + SY +T +H RG + R F G
Sbjct: 403 IPSLRRIVVTCTENGYP--VPSLSAALSYFDTFIH--------DRGTANLIQAQRDFFG- 451
Query: 242 LSSAFGKDTRLNQISGP 258
S F + ++++ GP
Sbjct: 452 -SHGFDRKDKISEPHGP 467
>gi|254780655|ref|YP_003065068.1| transketolase [Candidatus Liberibacter asiaticus str. psy62]
Length = 673
Score = 23.5 bits (49), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 102 VMAILFFTFFFYNTGVMKPVVSNVSPASPAAIAGVKKG-DCIISLDG 147
V+++ F FF + + + SP A AG+++G D I DG
Sbjct: 589 VVSVPCFELFFEQSDSYRAQIIGSSPIKIAIEAGLRQGWDAFIGSDG 635
>gi|254780615|ref|YP_003065028.1| F0F1 ATP synthase subunit beta [Candidatus Liberibacter asiaticus
str. psy62]
Length = 478
Score = 22.7 bits (47), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 145 LDGITV--SAFEEVAPYVRENPLHEISLVLYREHVGVLHLKVMPRLQDTVDRF 195
LD TV E Y +PL S +L + VG H V R+Q+ + R+
Sbjct: 334 LDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRY 386
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.330 0.145 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 227,582
Number of Sequences: 1233
Number of extensions: 9830
Number of successful extensions: 36
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 31
Number of HSP's gapped (non-prelim): 13
length of query: 349
length of database: 328,796
effective HSP length: 75
effective length of query: 274
effective length of database: 236,321
effective search space: 64751954
effective search space used: 64751954
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 39 (19.6 bits)