Query gi|254780774|ref|YP_003065187.1| phosphatidate cytidylyltransferase protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 269
No_of_seqs 184 out of 2275
Neff 8.3
Searched_HMMs 23785
Date Mon May 30 13:32:35 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780774.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b9w_A Ammonium transporter fa 89.9 0.97 4.1E-05 23.4 7.0 83 144-237 219-302 (407)
2 1u7g_A Probable ammonium trans 79.5 2.4 9.9E-05 21.0 4.6 66 162-237 255-320 (385)
3 2p97_A Hypothetical protein; p 50.5 6.3 0.00027 18.3 1.9 32 216-247 162-198 (201)
4 2xf4_A Hydroxyacylglutathione 45.1 5.8 0.00024 18.5 1.0 30 209-238 166-195 (210)
5 2zwr_A Metallo-beta-lactamase 40.8 9.4 0.00039 17.2 1.5 27 211-238 161-187 (207)
6 2gcu_A Putative hydroxyacylglu 38.7 9.6 0.0004 17.2 1.3 30 209-238 157-186 (245)
7 1bh9_B TAFII28; histone fold, 38.5 6.9 0.00029 18.0 0.6 28 208-235 47-74 (89)
8 2b2h_A AMT-1, ammonium transpo 35.9 20 0.00084 15.2 4.1 63 163-236 244-306 (399)
9 3hnn_A Putative diflavin flavo 34.8 13 0.00053 16.4 1.4 33 211-244 208-241 (262)
10 1jjt_A IMP-1 metallo beta-lact 32.7 5.5 0.00023 18.7 -0.7 33 210-242 172-204 (228)
11 3hd6_A Ammonium transporter RH 32.1 23 0.00096 14.8 6.1 53 194-246 307-362 (490)
12 2vw8_A PA1000, PQSE; quinolone 31.7 8.9 0.00037 17.4 0.2 29 211-240 200-228 (303)
13 1qh5_A Glyoxalase II, protein 31.4 12 0.00052 16.5 0.9 34 209-242 147-180 (260)
14 1mqo_A Beta-lactamase II; alph 28.3 10 0.00044 16.9 0.1 31 211-241 186-216 (227)
15 2fhx_A SPM-1; metallo-beta-lac 27.9 10 0.00042 17.0 -0.0 29 211-241 199-227 (246)
16 2gmn_A Metallo-beta-lactamase; 25.7 21 0.00087 15.1 1.3 33 211-245 200-232 (274)
17 1k07_A FEZ-1 beta-lactamase; m 24.5 22 0.00091 14.9 1.2 33 211-245 193-225 (263)
18 1ycg_A Nitric oxide reductase; 24.2 17 0.00072 15.6 0.6 37 209-245 200-238 (398)
19 1m2x_A Class B carbapenemase B 23.1 13 0.00053 16.4 -0.3 30 212-241 173-202 (223)
No 1
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transport protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=89.91 E-value=0.97 Score=23.36 Aligned_cols=83 Identities=13% Similarity=0.061 Sum_probs=57.9
Q ss_pred HHHHHHCCCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHH
Q ss_conf 10676300102345300002854024478899899999886421014665643013576678899988779-99999874
Q gi|254780774|r 144 DIFAYFIGRFVGGPKIAPKISPRKTWSGSIGGLFCGVGVGVALLSFFCANCFELALAVSILLSVSCQLGDL-FESYIKRY 222 (269)
Q Consensus 144 D~~AY~~G~~~Gk~kl~p~ISP~KT~EG~igG~i~s~i~~~~~~~~~~~~~~~~~i~l~~~~~i~~~~GDL-~eS~iKR~ 222 (269)
=..+++.-..+-| .|.|+--+-.|.++|+++-.-. ..+ .+++..+++|++.++.+..|-. .++.+||+
T Consensus 219 ~l~~~~~~~~~~~----gK~~~~~~~nG~LAGLVaITa~----~~~---v~p~~A~iIG~vag~i~~~~~~~l~~~l~~~ 287 (407)
T 3b9w_A 219 TLATYFLSALFHK----GKASIVDMANAALAGGVAIGSV----CNI---VGPVGAFVIGLLGGAISVVGFVFIQPMLESK 287 (407)
T ss_dssp HHHHHHHHHHHTT----TCCCHHHHHHHTTHHHHHHTTT----TTT---SCHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHCC----CCCCEEHHHHHHHHHHHHHCCC----CCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9998888765038----9744202122323432330666----675---7848999999877677777899999999861
Q ss_pred CCCCCCCCCCCCCCC
Q ss_conf 799854487998771
Q gi|254780774|r 223 FGIKQSGWLLPGHGG 237 (269)
Q Consensus 223 ~~vKDsg~llpGHGG 237 (269)
.++-|.-...|=||.
T Consensus 288 l~iDD~~gv~~vHg~ 302 (407)
T 3b9w_A 288 AKTIDTCGVHNLHGL 302 (407)
T ss_dssp SCCCCTTCHHHHTTH
T ss_pred CCCCCCCCCCHHHHH
T ss_conf 899898880087149
No 2
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia channnel, membrane protein, RH protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=79.52 E-value=2.4 Score=20.95 Aligned_cols=66 Identities=20% Similarity=0.152 Sum_probs=44.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 0285402447889989999988642101466564301357667889998877999999874799854487998771
Q gi|254780774|r 162 KISPRKTWSGSIGGLFCGVGVGVALLSFFCANCFELALAVSILLSVSCQLGDLFESYIKRYFGIKQSGWLLPGHGG 237 (269)
Q Consensus 162 ~ISP~KT~EG~igG~i~s~i~~~~~~~~~~~~~~~~~i~l~~~~~i~~~~GDL~eS~iKR~~~vKDsg~llpGHGG 237 (269)
|.|+-.+.+|.++|++...-. . ....++..+++|.+.++.+..+ ...+||+.++.|.-+..|=||.
T Consensus 255 k~~~~~~~nG~LaGlVaita~----~---~~v~p~~A~iiG~vag~i~~~~---~~~l~~~~~iDD~~~~~~vHg~ 320 (385)
T 1u7g_A 255 LPSLLGACSGAIAGLVGVTPA----C---GYIGVGGALIIGVVAGLAGLWG---VTMLKRLLRVDDPCDVFGVHGV 320 (385)
T ss_dssp SCCHHHHHHHHHHHHHHHTTT----T---TTSCHHHHHHHHHHHHHHHHHH---HHHHHHHHCSCCGGGHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCC----C---CCCCCHHHHHHHHHHHHHHHHH---HHHHHHHCCCCCCCCEEEECCH
T ss_conf 988899850124432002566----6---7758179999998889999999---9999871776688875612004
No 3
>2p97_A Hypothetical protein; putative metal-dependent hydrolase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.157.1.12
Probab=50.55 E-value=6.3 Score=18.28 Aligned_cols=32 Identities=25% Similarity=0.345 Sum_probs=23.6
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCH-----HHHHHHHHH
Q ss_conf 99998747998544879987716-----762647999
Q gi|254780774|r 216 ESYIKRYFGIKQSGWLLPGHGGV-----MDRVDGLVF 247 (269)
Q Consensus 216 eS~iKR~~~vKDsg~llpGHGGi-----lDR~Ds~l~ 247 (269)
.+.+||-....|.-.++||||.. -+|++.++-
T Consensus 162 ~~sl~~l~~l~~~~~i~pgHG~pi~~~~~~~~~~l~~ 198 (201)
T 2p97_A 162 VASVRRLAALEKVEAVLVGDGWSVFRDGRDRLKELVA 198 (201)
T ss_dssp HHHHHHHHTCTTCCEEEESBBCCBCSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCEEECCCCCHHHCCHHHHHHHHHH
T ss_conf 9999999617999699958997320699999999998
No 4
>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica}
Probab=45.11 E-value=5.8 Score=18.54 Aligned_cols=30 Identities=17% Similarity=0.409 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCH
Q ss_conf 988779999998747998544879987716
Q gi|254780774|r 209 CQLGDLFESYIKRYFGIKQSGWLLPGHGGV 238 (269)
Q Consensus 209 ~~~GDL~eS~iKR~~~vKDsg~llpGHGGi 238 (269)
+-..|+.+|.-++-....|-=.++||||-.
T Consensus 166 ~d~~~~~~sl~~~l~~l~~~~~v~PGHG~~ 195 (210)
T 2xf4_A 166 GDHTQLIDAIKRKLLPLGDDVTFIPGHGPL 195 (210)
T ss_dssp CCHHHHHHHHHHHTGGGCTTCEEEESSSCC
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 999999999999997089983998999986
No 5
>2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A {Thermus thermophilus} PDB: 2zzi_A
Probab=40.77 E-value=9.4 Score=17.21 Aligned_cols=27 Identities=33% Similarity=0.543 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCH
Q ss_conf 8779999998747998544879987716
Q gi|254780774|r 211 LGDLFESYIKRYFGIKQSGWLLPGHGGV 238 (269)
Q Consensus 211 ~GDL~eS~iKR~~~vKDsg~llpGHGGi 238 (269)
..++.+| ++|-....+.-.++||||..
T Consensus 161 ~~~~~~s-l~kl~~l~~~~~i~PGHG~~ 187 (207)
T 2zwr_A 161 PKALFAS-LKRLLSLPPETRVHPGHGPG 187 (207)
T ss_dssp HHHHHHH-HHHHTTSCTTCEEEESBSCC
T ss_pred HHHHHHH-HHHHHCCCCCEEEECCCCCC
T ss_conf 9999999-99997589986999999986
No 6
>2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic encephalopathy, ETHE1, structural genomics, protein structure initiative; 1.48A {Arabidopsis thaliana}
Probab=38.72 E-value=9.6 Score=17.15 Aligned_cols=30 Identities=20% Similarity=0.326 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCH
Q ss_conf 988779999998747998544879987716
Q gi|254780774|r 209 CQLGDLFESYIKRYFGIKQSGWLLPGHGGV 238 (269)
Q Consensus 209 ~~~GDL~eS~iKR~~~vKDsg~llpGHGGi 238 (269)
+-..+|.+|.-||-....|--.+.||||--
T Consensus 157 g~~~~l~~sl~~~l~~Lp~~t~i~pGH~~~ 186 (245)
T 2gcu_A 157 GSSDQLYESVHSQIFTLPKDTLIYPAHDYK 186 (245)
T ss_dssp CCHHHHHHHHHHHTTTSCTTCEEEESBCSS
T ss_pred CCHHHHHHHHHHHHHCCCCCEEEECCCCCC
T ss_conf 869999999986754599517997787887
No 7
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=38.55 E-value=6.9 Score=18.04 Aligned_cols=28 Identities=18% Similarity=0.164 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 9988779999998747998544879987
Q gi|254780774|r 208 SCQLGDLFESYIKRYFGIKQSGWLLPGH 235 (269)
Q Consensus 208 ~~~~GDL~eS~iKR~~~vKDsg~llpGH 235 (269)
=-++||++|-+..=.-.-+|.|.|.|-|
T Consensus 47 KvFvGEiVE~A~~V~~~~~e~gPL~P~H 74 (89)
T 1bh9_B 47 KVFVGEVVEEALDVCEKWGEMPPLQPKH 74 (89)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSSCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf 9999999999999999735789999489
No 8
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=35.94 E-value=20 Score=15.17 Aligned_cols=63 Identities=21% Similarity=0.163 Sum_probs=38.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 28540244788998999998864210146656430135766788999887799999987479985448799877
Q gi|254780774|r 163 ISPRKTWSGSIGGLFCGVGVGVALLSFFCANCFELALAVSILLSVSCQLGDLFESYIKRYFGIKQSGWLLPGHG 236 (269)
Q Consensus 163 ISP~KT~EG~igG~i~s~i~~~~~~~~~~~~~~~~~i~l~~~~~i~~~~GDL~eS~iKR~~~vKDsg~llpGHG 236 (269)
-||-.+.+|.++|++... .-..+ ..++..+++|++.++....+- .+|++.++-|.-+..|=||
T Consensus 244 ~~~~~~~nG~LaGLVaIT----a~~~~---v~p~~A~iiG~iag~i~~~~~----~~~~~lkIDD~v~a~~vHg 306 (399)
T 2b2h_A 244 PGSLGIVSGAIAGLAAIT----PAAGF---VDVKGAIVIGLVAGIVCYLAM----DFRIKKKIDESLDAWAIHG 306 (399)
T ss_dssp CCHHHHHHHHHHHHHHHT----TTTTT---CCHHHHHHHHHHHHHHHHHHH----HHHHHTTCCCTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHEEC----CCCCC---CCCHHHHHHHHHHHHHHHHHH----HHHHHHCCCCCCCEEEECC
T ss_conf 878876532232344030----45134---673799998988764267888----8888856777445043200
No 9
>3hnn_A Putative diflavin flavoprotein A 5; PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, NSR435A, DFA5; 1.80A {Nostoc SP}
Probab=34.81 E-value=13 Score=16.43 Aligned_cols=33 Identities=15% Similarity=0.180 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCHHH-HHHH
Q ss_conf 877999999874799854487998771676-2647
Q gi|254780774|r 211 LGDLFESYIKRYFGIKQSGWLLPGHGGVMD-RVDG 244 (269)
Q Consensus 211 ~GDL~eS~iKR~~~vKDsg~llpGHGGilD-R~Ds 244 (269)
......+.++|-.+. |--.+.||||.+++ ..+.
T Consensus 208 ~~~~~~~sL~~l~~L-~~~~I~PgHGpvi~~~~~~ 241 (262)
T 3hnn_A 208 HAIHVEAALEKISDL-QVRLYAVGHGPLVRTSLIA 241 (262)
T ss_dssp GHHHHHHHHHHHTTS-CCSEEEESSSSEESTTHHH
T ss_pred CHHHHHHHHHHHHCC-CCCEEECCCCCHHHCCHHH
T ss_conf 499999999998789-9899995798245369999
No 10
>1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A
Probab=32.68 E-value=5.5 Score=18.66 Aligned_cols=33 Identities=15% Similarity=0.062 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
Q ss_conf 887799999987479985448799877167626
Q gi|254780774|r 210 QLGDLFESYIKRYFGIKQSGWLLPGHGGVMDRV 242 (269)
Q Consensus 210 ~~GDL~eS~iKR~~~vKDsg~llpGHGGilDR~ 242 (269)
...+..+|.=+-..-..|.-.++||||...||-
T Consensus 172 ~~~~~~~sl~~l~~~~~~~~~viPgHG~~~~~~ 204 (228)
T 1jjt_A 172 NIEAWPKSAKLLKSKYGKAKLVVPSHSEVGDAS 204 (228)
T ss_dssp CTTTHHHHHHHHHHHTTTCSEEEESSSCCBCTH
T ss_pred CHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHH
T ss_conf 999999999999964899839990988435989
No 11
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=32.14 E-value=23 Score=14.79 Aligned_cols=53 Identities=19% Similarity=0.301 Sum_probs=39.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHH-HHHHHHHHCCCCCCCCCCCCCC--CHHHHHHHHH
Q ss_conf 643013576678899988779-9999987479985448799877--1676264799
Q gi|254780774|r 194 CFELALAVSILLSVSCQLGDL-FESYIKRYFGIKQSGWLLPGHG--GVMDRVDGLV 246 (269)
Q Consensus 194 ~~~~~i~l~~~~~i~~~~GDL-~eS~iKR~~~vKDsg~llpGHG--GilDR~Ds~l 246 (269)
.++..+++|++.++.+..|-- ....+||+.++-|.-+..|=|| |++--+=.-+
T Consensus 307 ~P~~A~iIG~iaG~i~~~g~~~l~~~l~~~l~IDD~~gv~~vHg~~Gi~G~l~~gi 362 (490)
T 3hd6_A 307 MPYGALIIGFVCGIISTLGFVYLTPFLESRLHIQDTCGINNLHGIPGIIGGIVGAV 362 (490)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCTTCHHHHTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 87999999999999987789999999998588889898637511899999999999
No 12
>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A*
Probab=31.71 E-value=8.9 Score=17.36 Aligned_cols=29 Identities=31% Similarity=0.599 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
Q ss_conf 877999999874799854487998771676
Q gi|254780774|r 211 LGDLFESYIKRYFGIKQSGWLLPGHGGVMD 240 (269)
Q Consensus 211 ~GDL~eS~iKR~~~vKDsg~llpGHGGilD 240 (269)
..+..+| ++|-...+|--.+.||||++..
T Consensus 200 ~~~~~~s-l~rl~~l~~~~~i~PgHG~~~~ 228 (303)
T 2vw8_A 200 MEAYLES-LERLQRLPTLLQLIPGHGGLLR 228 (303)
T ss_dssp HHHHHHH-HHHHHTSSCCSEEEESSSCEEE
T ss_pred HHHHHHH-HHHHHCCCCCCEEECCCCCCCC
T ss_conf 9999999-9999768999899999997338
No 13
>1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase); metallo-hydrolase; HET: GTT GBP; 1.45A {Homo sapiens} SCOP: d.157.1.2 PDB: 1qh3_A*
Probab=31.44 E-value=12 Score=16.46 Aligned_cols=34 Identities=6% Similarity=0.128 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
Q ss_conf 9887799999987479985448799877167626
Q gi|254780774|r 209 CQLGDLFESYIKRYFGIKQSGWLLPGHGGVMDRV 242 (269)
Q Consensus 209 ~~~GDL~eS~iKR~~~vKDsg~llpGHGGilDR~ 242 (269)
+-..++.+|..||-...-|.-.+.||||.-.+-.
T Consensus 147 g~~~~l~~si~~~l~~Lpd~t~vypGH~y~~~n~ 180 (260)
T 1qh5_A 147 GTADEMCKALLEVLGRLPPDTRVYCGHEYTINNL 180 (260)
T ss_dssp CCHHHHHHHHHTTTTTSCTTCEEEESBCCHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCH
T ss_conf 9989998999889852997637952666765546
No 14
>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 2bfz_A 2bg6_A 2bga_A ...
Probab=28.26 E-value=10 Score=16.94 Aligned_cols=31 Identities=23% Similarity=0.315 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
Q ss_conf 8779999998747998544879987716762
Q gi|254780774|r 211 LGDLFESYIKRYFGIKQSGWLLPGHGGVMDR 241 (269)
Q Consensus 211 ~GDL~eS~iKR~~~vKDsg~llpGHGGilDR 241 (269)
..+..+|.=|-..-..|.-.++||||-+.||
T Consensus 186 ~~~~~~sl~~l~~~~~~~~~vvPgHG~~~~~ 216 (227)
T 1mqo_A 186 VNEWSTSIENVLKRYRNINAVVPGHGEVGDK 216 (227)
T ss_dssp HHHHHHHHHHHHHHCCSCSEEEESSSCCBCT
T ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCCCCCH
T ss_conf 9999999999983379998999598966898
No 15
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistance, structure, hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa}
Probab=27.94 E-value=10 Score=17.03 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
Q ss_conf 8779999998747998544879987716762
Q gi|254780774|r 211 LGDLFESYIKRYFGIKQSGWLLPGHGGVMDR 241 (269)
Q Consensus 211 ~GDL~eS~iKR~~~vKDsg~llpGHGGilDR 241 (269)
..+..+| ++|-.+.+ .-.++||||.+.+|
T Consensus 199 ~~~~~~s-L~~l~~l~-~~~l~pGHG~~~~~ 227 (246)
T 2fhx_A 199 VKAWPDS-ARRLKKFD-AKIVIPGHGEWGGP 227 (246)
T ss_dssp TTTHHHH-HHHGGGSC-CSEEEESBSCCBST
T ss_pred HHHHHHH-HHHHHCCC-CCEEEECCCCCCCH
T ss_conf 9999999-99997799-49999499998999
No 16
>2gmn_A Metallo-beta-lactamase; hydrolase; 1.40A {Bradyrhizobium japonicum usda 110} SCOP: d.157.1.1
Probab=25.72 E-value=21 Score=15.05 Aligned_cols=33 Identities=15% Similarity=0.058 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 87799999987479985448799877167626479
Q gi|254780774|r 211 LGDLFESYIKRYFGIKQSGWLLPGHGGVMDRVDGL 245 (269)
Q Consensus 211 ~GDL~eS~iKR~~~vKDsg~llpGHGGilDR~Ds~ 245 (269)
..|.. +.++|-.+. |...++||||+..|..+..
T Consensus 200 ~~~~~-~sl~~l~~l-~~d~vipgHg~~~~~~~~~ 232 (274)
T 2gmn_A 200 VDDYR-ATFAKAKAM-KIDVLLGPHPEVYGMQAKR 232 (274)
T ss_dssp HHHHH-HHHHHHHHS-CCSEEECSSGGGTTHHHHH
T ss_pred HHHHH-HHHHHHHCC-CCCEEECCCCCCCCHHHHH
T ss_conf 99999-999999769-9999988989754738999
No 17
>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER assymmetric UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A
Probab=24.45 E-value=22 Score=14.93 Aligned_cols=33 Identities=24% Similarity=0.286 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 87799999987479985448799877167626479
Q gi|254780774|r 211 LGDLFESYIKRYFGIKQSGWLLPGHGGVMDRVDGL 245 (269)
Q Consensus 211 ~GDL~eS~iKR~~~vKDsg~llpGHGGilDR~Ds~ 245 (269)
..|+.+| ++|-.+.++. -++||||+..|-.+.+
T Consensus 193 ~~~~~~s-l~~l~~l~~~-~vi~gHg~~~~~~~~~ 225 (263)
T 1k07_A 193 AEDYKHS-IKVLESMRCD-IFLGSHAGMFDLKNKY 225 (263)
T ss_dssp HHHHHHH-HHHHHTBCCS-EEEESBHHHHTHHHHH
T ss_pred HHHHHHH-HHHHHCCCCC-EEEECCCCCCCHHHHH
T ss_conf 9999999-9999789939-9990989832658899
No 18
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=24.21 E-value=17 Score=15.57 Aligned_cols=37 Identities=14% Similarity=0.211 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHCCCC-CCCCCCCCCCCHHH-HHHHH
Q ss_conf 988779999998747998-54487998771676-26479
Q gi|254780774|r 209 CQLGDLFESYIKRYFGIK-QSGWLLPGHGGVMD-RVDGL 245 (269)
Q Consensus 209 ~~~GDL~eS~iKR~~~vK-Dsg~llpGHGGilD-R~Ds~ 245 (269)
+...+-..+.+||-.... |--.+.||||.+++ +.+.+
T Consensus 200 ~~~~~~~~~~L~~l~~L~l~i~~I~PgHGpv~~~~~~~~ 238 (398)
T 1ycg_A 200 MPFSNLITKKLDEIQKINLAIKTIAPSHGIIWRKDPGRI 238 (398)
T ss_dssp GGGHHHHHHHHHHHHHTTCCCSEEEESSSCBBCSCHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCCEEEECCCCHHHCCHHHH
T ss_conf 687899999999998659982499708986320699999
No 19
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1
Probab=23.14 E-value=13 Score=16.43 Aligned_cols=30 Identities=17% Similarity=0.213 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
Q ss_conf 779999998747998544879987716762
Q gi|254780774|r 212 GDLFESYIKRYFGIKQSGWLLPGHGGVMDR 241 (269)
Q Consensus 212 GDL~eS~iKR~~~vKDsg~llpGHGGilDR 241 (269)
-|..+|.=|.....-|.-.++||||...|+
T Consensus 173 ~~~~~sl~~l~~~~~~~~~viPgHG~~~~~ 202 (223)
T 1m2x_A 173 NDWTQSVHNIQQKFSGAQYVVAGHDDWKDQ 202 (223)
T ss_dssp HHHHHHHHHHHHHTTTCSEEEESBSCCCST
T ss_pred HHHHHHHHHHHHHCCCCCEEECCCCCCCCH
T ss_conf 999999999970079997999798985898
Done!