RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780774|ref|YP_003065187.1| phosphatidate cytidylyltransferase protein [Candidatus Liberibacter asiaticus str. psy62] (269 letters) >gnl|CDD|183240 PRK11624, cdsA, CDP-diglyceride synthase; Provisional. Length = 285 Score = 90.5 bits (225), Expect = 4e-19 Identities = 57/135 (42%), Positives = 74/135 (54%), Gaps = 16/135 (11%) Query: 129 GCVIVFFVLSVVWATDIFAYFIGRFVGGPKIAPKISPRKTWSGSIGGLFCGVGVGVALLS 188 G + +V+ +VW D AY G+ G K+APK+SP KTW G IGGL A++S Sbjct: 150 GAWWLLYVMILVWGADSGAYMFGKLFGKHKLAPKVSPGKTWEGFIGGLATA-----AVIS 204 Query: 189 FFCANCFELALAVSILLSVS------CQLGDLFESYIKRYFGIKQSGWLLPGHGGVMDRV 242 + L +A LL S LGDL ES KR GIK SG L+PGHGG++DR+ Sbjct: 205 WLFGMWAPLDVAPVTLLICSIVAALASVLGDLTESMFKREAGIKDSGHLIPGHGGILDRI 264 Query: 243 DGL-----VFSCFLM 252 D L VF+C L+ Sbjct: 265 DSLTAAVPVFACLLL 279 >gnl|CDD|178539 PLN02953, PLN02953, phosphatidate cytidylyltransferase. Length = 403 Score = 74.7 bits (183), Expect = 3e-14 Identities = 52/140 (37%), Positives = 71/140 (50%), Gaps = 4/140 (2%) Query: 129 GCVIVFFVLSVVWATDIFAYFIGRFVGGPKIAPKISPRKTWSGSIGGLFCGVGVGVALLS 188 G V S V ATD FA+ G+ G + ISP+KTW G+ GL + + + L Sbjct: 267 GLVATLISFSGVIATDTFAFLGGKAFGRTPLT-SISPKKTWEGTFVGLVGCIAITILLSK 325 Query: 189 FFC-ANCFELALAVSILLSVSCQLGDLFESYIKRYFGIKQSGWLLPGHGGVMDRVDGLVF 247 ++A L GDL ES IKR G+K SG L+PGHGG++DRVD +F Sbjct: 326 SLSWPQSLFSSIAFGFLNFFGSVFGDLTESMIKRDAGVKDSGSLIPGHGGILDRVDSYIF 385 Query: 248 SCFLMSAISFFGIATEMIGV 267 + L A SF + ++ GV Sbjct: 386 TGAL--AYSFIKTSLKLYGV 403 >gnl|CDD|178204 PLN02594, PLN02594, phosphatidate cytidylyltransferase. Length = 342 Score = 50.4 bits (121), Expect = 4e-07 Identities = 44/162 (27%), Positives = 60/162 (37%), Gaps = 52/162 (32%) Query: 132 IVFFVL--SVVWATDIFAYFIGRFVG-GPKIAPKISPRKTWSG----------------- 171 I +F+L S++ DI AY G F G P I K+SP+KTW G Sbjct: 124 IFWFLLPASLIVINDIAAYLFGFFFGRTPLI--KLSPKKTWEGFIGASVTTLISAFYLAN 181 Query: 172 ---------------SIGGLFCGVG------------VGVALLSFFCANCFEL---ALAV 201 S G L C + + + AL++ Sbjct: 182 IMGKFQWLTCPRKDLSTGWLECDPDPLFKPETYPLPGWIPRWFPWKEVSVLPVQWHALSL 241 Query: 202 SILLSVSCQLGDLFESYIKRYFGIKQSGWLLPGHGGVMDRVD 243 + S+ G F S KR F IK G +PGHGG+ DR+D Sbjct: 242 GLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMD 283 >gnl|CDD|179720 PRK04032, PRK04032, hypothetical protein; Provisional. Length = 159 Score = 49.1 bits (118), Expect = 1e-06 Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 2/63 (3%) Query: 167 KTWSGSIGGLFCGVGVGVALLSFFCANCFEL--ALAVSILLSVSCQLGDLFESYIKRYFG 224 KTW G IGG+ G VG+ A L A+ ++ LLS LGD+ S+IKR G Sbjct: 37 KTWRGLIGGILFGTLVGLIQNLLVPAYIGALGVAIILAFLLSFGALLGDMLGSFIKRRLG 96 Query: 225 IKQ 227 +++ Sbjct: 97 LER 99 >gnl|CDD|179117 PRK00770, PRK00770, deoxyhypusine synthase-like protein; Provisional. Length = 384 Score = 30.9 bits (70), Expect = 0.37 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 3/78 (3%) Query: 72 MIITGFFKSAFFLLMLYSFIDWMISIMKN--RAFWRALGV-VYSGLPSIALSSLRGDDAK 128 M GF SA L+ FIDW+IS N ALG+ +++G P + LR + Sbjct: 62 MTPAGFGVSALAPLIEAGFIDWIISTGANLYHDLHYALGLPLFAGHPFVDDVKLREEGII 121 Query: 129 GCVIVFFVLSVVWATDIF 146 + F V+ TD F Sbjct: 122 RIYDIIFDYDVLLETDAF 139 >gnl|CDD|185362 PRK15465, pabB, aminodeoxychorismate synthase subunit I; Provisional. Length = 453 Score = 29.1 bits (65), Expect = 1.3 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 10/48 (20%) Query: 142 ATDIF--AYFIGRFVGGPK-----IAPKISP--RKTWSGSIGGL-FCG 179 A+D+ A+ G G PK I ++ P R W GSIG L FCG Sbjct: 354 ASDLLRAAFPGGSITGAPKVRAMEIIDELEPQRRNAWCGSIGYLSFCG 401 >gnl|CDD|184507 PRK14101, PRK14101, bifunctional glucokinase/RpiR family transcriptional regulator; Provisional. Length = 638 Score = 28.7 bits (64), Expect = 1.6 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 9/54 (16%) Query: 142 ATDIFAYFIGRFVGGPKIAPKISPRKTWSGSIGGLFCGVGVGVALLSFFCANCF 195 A + F +G F G +A + G++GG++ G GV L F + F Sbjct: 248 AVECFCAILGTFAG--NLALTL-------GALGGIYIGGGVVPKLGELFTRSSF 292 >gnl|CDD|150534 pfam09874, DUF2101, Predicted membrane protein (DUF2101). This domain, found in various hypothetical archaeal proteins, has no known function. Length = 206 Score = 28.6 bits (64), Expect = 1.7 Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 2/53 (3%) Query: 60 ILGLFTFFLVFF--MIITGFFKSAFFLLMLYSFIDWMISIMKNRAFWRALGVV 110 I+ L FL+ +I+ + +L ++MI R F+ + + Sbjct: 45 IISLVYVFLISILILILAALLYFLYLRYILIRNREFMIDFEAYRFFYLGVSTI 97 >gnl|CDD|131843 TIGR02796, tolQ, TolQ protein. TolQ is one of the essential components of the Tol-Pal system. Together with TolR, it harnesses protonmotive force to energize TolA, which spans the periplasm to reach the complex of TolB and Pal at the outer member. The tol-pal system proves to be important for maintaining outer membrane integrity. Gene pairs similar to the TolQ and TolR gene pair often number several per genome, but this model describes specificially TolQ per se, as found in tol-pal operons. A close homolog, excluded from this model, is ExbB of the ExbB/ExbD/TonB protein complex, which powers transport of siderophores and vitamin B12 across the bacterial outer membrane. The Tol-Pal system is exploited by colicin and filamentous phage DNA to enter the cell. It is also implicated in pathogenesis in several bacterial species. Length = 215 Score = 28.0 bits (63), Expect = 2.7 Identities = 11/28 (39%), Positives = 13/28 (46%) Query: 79 KSAFFLLMLYSFIDWMISIMKNRAFWRA 106 K +L+L S I W I K F RA Sbjct: 14 KLVMLILLLASIISWAIIFQKFFIFRRA 41 >gnl|CDD|179519 PRK02983, lysS, lysyl-tRNA synthetase; Provisional. Length = 1094 Score = 27.2 bits (61), Expect = 4.9 Identities = 27/175 (15%), Positives = 58/175 (33%), Gaps = 24/175 (13%) Query: 21 LISWIGGIWFRLWTMVMSLCIYYEWKIITGSVSLSLSEKILGLFTFFLVFFMII-----T 75 W G+ +++ S+ W I + + F + + Sbjct: 13 AAGWTVGV-IATLSLLASVSPLLRWIIRVPREFVDDYLFNFPDTSLAWAFVLALLAAALR 71 Query: 76 GFFKSAFFLLMLYSFIDWMISIMKNRAFWRALGVVYSGLPSIALSSLRGDDAKGCVIVFF 135 ++A+++L+ Y + ++++ AL + + V V Sbjct: 72 RRKRAAWWVLLAYLVLAALLNV--------ALLALGVNTAAETFGENSLSIIGFAVHVVA 123 Query: 136 VLSVVWATDIFAYFIGRFVGGPKIAPKISPRKTWSGSIGGLFCGVGVGVALLSFF 190 ++ +V A F + R + RK + +GGL G+ VG L+ F Sbjct: 124 IVLLVLARREFPARVRR----------GALRKALAVLVGGLAVGILVGWGLVELF 168 >gnl|CDD|130208 TIGR01138, cysM, cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase. Length = 290 Score = 26.8 bits (59), Expect = 6.1 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 7/45 (15%) Query: 175 GLFCGVGVGVALLSFFCANCFELA--LAVSILLSVSCQLGDLFES 217 G+FCGV G A+ A LA L ++++++ C GD + S Sbjct: 247 GIFCGVSSGGAV-----AAALRLARELPDAVVVAIICDRGDRYLS 286 >gnl|CDD|178732 PLN03190, PLN03190, aminophospholipid translocase; Provisional. Length = 1178 Score = 26.8 bits (59), Expect = 6.6 Identities = 15/58 (25%), Positives = 34/58 (58%), Gaps = 3/58 (5%) Query: 71 FMIITGFFKSAFFLLMLYSFIDWM-ISIMKNRAFWRAL--GVVYSGLPSIALSSLRGD 125 +MI+ F+++A F+L+L+ ++ + ++ W ++ V+Y+ LP+I + L D Sbjct: 935 YMILYNFYRNAVFVLVLFWYVLFTCFTLTTAINEWSSVLYSVIYTALPTIVVGILDKD 992 >gnl|CDD|185297 PRK15399, PRK15399, lysine decarboxylase LdcC; Provisional. Length = 713 Score = 26.6 bits (59), Expect = 7.2 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 14/56 (25%) Query: 182 VGVALLSFFCANCFELALAVSILLSVSCQLGDLF---------ESYIKRYFGIKQS 228 VG FF N + +++S+ +LG L E YI R FG +QS Sbjct: 163 VGCLFYDFFGGNTLKADVSISV-----TELGSLLDHTGPHLEAEEYIARTFGAEQS 213 >gnl|CDD|181736 PRK09263, PRK09263, anaerobic ribonucleoside triphosphate reductase; Provisional. Length = 711 Score = 26.4 bits (59), Expect = 7.4 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%) Query: 107 LGVVYSGLPSIALSSLRGDDAK 128 LGVV LP IAL + +GD+ K Sbjct: 407 LGVVTLNLPRIALEA-KGDEDK 427 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.334 0.147 0.484 Gapped Lambda K H 0.267 0.0744 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 4,538,050 Number of extensions: 299763 Number of successful extensions: 1497 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1470 Number of HSP's successfully gapped: 134 Length of query: 269 Length of database: 5,994,473 Length adjustment: 92 Effective length of query: 177 Effective length of database: 4,006,537 Effective search space: 709157049 Effective search space used: 709157049 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.5 bits) S2: 56 (25.3 bits)