RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780774|ref|YP_003065187.1| phosphatidate
cytidylyltransferase protein [Candidatus Liberibacter asiaticus str.
psy62]
         (269 letters)



>gnl|CDD|183240 PRK11624, cdsA, CDP-diglyceride synthase; Provisional.
          Length = 285

 Score = 90.5 bits (225), Expect = 4e-19
 Identities = 57/135 (42%), Positives = 74/135 (54%), Gaps = 16/135 (11%)

Query: 129 GCVIVFFVLSVVWATDIFAYFIGRFVGGPKIAPKISPRKTWSGSIGGLFCGVGVGVALLS 188
           G   + +V+ +VW  D  AY  G+  G  K+APK+SP KTW G IGGL        A++S
Sbjct: 150 GAWWLLYVMILVWGADSGAYMFGKLFGKHKLAPKVSPGKTWEGFIGGLATA-----AVIS 204

Query: 189 FFCANCFELALAVSILLSVS------CQLGDLFESYIKRYFGIKQSGWLLPGHGGVMDRV 242
           +       L +A   LL  S        LGDL ES  KR  GIK SG L+PGHGG++DR+
Sbjct: 205 WLFGMWAPLDVAPVTLLICSIVAALASVLGDLTESMFKREAGIKDSGHLIPGHGGILDRI 264

Query: 243 DGL-----VFSCFLM 252
           D L     VF+C L+
Sbjct: 265 DSLTAAVPVFACLLL 279


>gnl|CDD|178539 PLN02953, PLN02953, phosphatidate cytidylyltransferase.
          Length = 403

 Score = 74.7 bits (183), Expect = 3e-14
 Identities = 52/140 (37%), Positives = 71/140 (50%), Gaps = 4/140 (2%)

Query: 129 GCVIVFFVLSVVWATDIFAYFIGRFVGGPKIAPKISPRKTWSGSIGGLFCGVGVGVALLS 188
           G V      S V ATD FA+  G+  G   +   ISP+KTW G+  GL   + + + L  
Sbjct: 267 GLVATLISFSGVIATDTFAFLGGKAFGRTPLT-SISPKKTWEGTFVGLVGCIAITILLSK 325

Query: 189 FFC-ANCFELALAVSILLSVSCQLGDLFESYIKRYFGIKQSGWLLPGHGGVMDRVDGLVF 247
                     ++A   L       GDL ES IKR  G+K SG L+PGHGG++DRVD  +F
Sbjct: 326 SLSWPQSLFSSIAFGFLNFFGSVFGDLTESMIKRDAGVKDSGSLIPGHGGILDRVDSYIF 385

Query: 248 SCFLMSAISFFGIATEMIGV 267
           +  L  A SF   + ++ GV
Sbjct: 386 TGAL--AYSFIKTSLKLYGV 403


>gnl|CDD|178204 PLN02594, PLN02594, phosphatidate cytidylyltransferase.
          Length = 342

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 44/162 (27%), Positives = 60/162 (37%), Gaps = 52/162 (32%)

Query: 132 IVFFVL--SVVWATDIFAYFIGRFVG-GPKIAPKISPRKTWSG----------------- 171
           I +F+L  S++   DI AY  G F G  P I  K+SP+KTW G                 
Sbjct: 124 IFWFLLPASLIVINDIAAYLFGFFFGRTPLI--KLSPKKTWEGFIGASVTTLISAFYLAN 181

Query: 172 ---------------SIGGLFCGVG------------VGVALLSFFCANCFEL---ALAV 201
                          S G L C                      +   +   +   AL++
Sbjct: 182 IMGKFQWLTCPRKDLSTGWLECDPDPLFKPETYPLPGWIPRWFPWKEVSVLPVQWHALSL 241

Query: 202 SILLSVSCQLGDLFESYIKRYFGIKQSGWLLPGHGGVMDRVD 243
            +  S+    G  F S  KR F IK  G  +PGHGG+ DR+D
Sbjct: 242 GLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMD 283


>gnl|CDD|179720 PRK04032, PRK04032, hypothetical protein; Provisional.
          Length = 159

 Score = 49.1 bits (118), Expect = 1e-06
 Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 167 KTWSGSIGGLFCGVGVGVALLSFFCANCFEL--ALAVSILLSVSCQLGDLFESYIKRYFG 224
           KTW G IGG+  G  VG+       A    L  A+ ++ LLS    LGD+  S+IKR  G
Sbjct: 37  KTWRGLIGGILFGTLVGLIQNLLVPAYIGALGVAIILAFLLSFGALLGDMLGSFIKRRLG 96

Query: 225 IKQ 227
           +++
Sbjct: 97  LER 99


>gnl|CDD|179117 PRK00770, PRK00770, deoxyhypusine synthase-like protein;
           Provisional.
          Length = 384

 Score = 30.9 bits (70), Expect = 0.37
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 3/78 (3%)

Query: 72  MIITGFFKSAFFLLMLYSFIDWMISIMKN--RAFWRALGV-VYSGLPSIALSSLRGDDAK 128
           M   GF  SA   L+   FIDW+IS   N       ALG+ +++G P +    LR +   
Sbjct: 62  MTPAGFGVSALAPLIEAGFIDWIISTGANLYHDLHYALGLPLFAGHPFVDDVKLREEGII 121

Query: 129 GCVIVFFVLSVVWATDIF 146
               + F   V+  TD F
Sbjct: 122 RIYDIIFDYDVLLETDAF 139


>gnl|CDD|185362 PRK15465, pabB, aminodeoxychorismate synthase subunit I;
           Provisional.
          Length = 453

 Score = 29.1 bits (65), Expect = 1.3
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 10/48 (20%)

Query: 142 ATDIF--AYFIGRFVGGPK-----IAPKISP--RKTWSGSIGGL-FCG 179
           A+D+   A+  G   G PK     I  ++ P  R  W GSIG L FCG
Sbjct: 354 ASDLLRAAFPGGSITGAPKVRAMEIIDELEPQRRNAWCGSIGYLSFCG 401


>gnl|CDD|184507 PRK14101, PRK14101, bifunctional glucokinase/RpiR family
           transcriptional regulator; Provisional.
          Length = 638

 Score = 28.7 bits (64), Expect = 1.6
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 9/54 (16%)

Query: 142 ATDIFAYFIGRFVGGPKIAPKISPRKTWSGSIGGLFCGVGVGVALLSFFCANCF 195
           A + F   +G F G   +A  +       G++GG++ G GV   L   F  + F
Sbjct: 248 AVECFCAILGTFAG--NLALTL-------GALGGIYIGGGVVPKLGELFTRSSF 292


>gnl|CDD|150534 pfam09874, DUF2101, Predicted membrane protein (DUF2101).  This
           domain, found in various hypothetical archaeal proteins,
           has no known function.
          Length = 206

 Score = 28.6 bits (64), Expect = 1.7
 Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 60  ILGLFTFFLVFF--MIITGFFKSAFFLLMLYSFIDWMISIMKNRAFWRALGVV 110
           I+ L   FL+    +I+       +   +L    ++MI     R F+  +  +
Sbjct: 45  IISLVYVFLISILILILAALLYFLYLRYILIRNREFMIDFEAYRFFYLGVSTI 97


>gnl|CDD|131843 TIGR02796, tolQ, TolQ protein.  TolQ is one of the essential
           components of the Tol-Pal system. Together with TolR, it
           harnesses protonmotive force to energize TolA, which
           spans the periplasm to reach the complex of TolB and Pal
           at the outer member. The tol-pal system proves to be
           important for maintaining outer membrane integrity. Gene
           pairs similar to the TolQ and TolR gene pair often
           number several per genome, but this model describes
           specificially TolQ per se, as found in tol-pal operons.
           A close homolog, excluded from this model, is ExbB of
           the ExbB/ExbD/TonB protein complex, which powers
           transport of siderophores and vitamin B12 across the
           bacterial outer membrane. The Tol-Pal system is
           exploited by colicin and filamentous phage DNA to enter
           the cell. It is also implicated in pathogenesis in
           several bacterial species.
          Length = 215

 Score = 28.0 bits (63), Expect = 2.7
 Identities = 11/28 (39%), Positives = 13/28 (46%)

Query: 79  KSAFFLLMLYSFIDWMISIMKNRAFWRA 106
           K    +L+L S I W I   K   F RA
Sbjct: 14  KLVMLILLLASIISWAIIFQKFFIFRRA 41


>gnl|CDD|179519 PRK02983, lysS, lysyl-tRNA synthetase; Provisional.
          Length = 1094

 Score = 27.2 bits (61), Expect = 4.9
 Identities = 27/175 (15%), Positives = 58/175 (33%), Gaps = 24/175 (13%)

Query: 21  LISWIGGIWFRLWTMVMSLCIYYEWKIITGSVSLSLSEKILGLFTFFLVFFMII-----T 75
              W  G+     +++ S+     W I      +          +    F + +      
Sbjct: 13  AAGWTVGV-IATLSLLASVSPLLRWIIRVPREFVDDYLFNFPDTSLAWAFVLALLAAALR 71

Query: 76  GFFKSAFFLLMLYSFIDWMISIMKNRAFWRALGVVYSGLPSIALSSLRGDDAKGCVIVFF 135
              ++A+++L+ Y  +  ++++        AL  +     +              V V  
Sbjct: 72  RRKRAAWWVLLAYLVLAALLNV--------ALLALGVNTAAETFGENSLSIIGFAVHVVA 123

Query: 136 VLSVVWATDIFAYFIGRFVGGPKIAPKISPRKTWSGSIGGLFCGVGVGVALLSFF 190
           ++ +V A   F   + R           + RK  +  +GGL  G+ VG  L+  F
Sbjct: 124 IVLLVLARREFPARVRR----------GALRKALAVLVGGLAVGILVGWGLVELF 168


>gnl|CDD|130208 TIGR01138, cysM, cysteine synthase B.  Alternate name:
           O-acetylserine (thiol)-lyase.
          Length = 290

 Score = 26.8 bits (59), Expect = 6.1
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 7/45 (15%)

Query: 175 GLFCGVGVGVALLSFFCANCFELA--LAVSILLSVSCQLGDLFES 217
           G+FCGV  G A+     A    LA  L  ++++++ C  GD + S
Sbjct: 247 GIFCGVSSGGAV-----AAALRLARELPDAVVVAIICDRGDRYLS 286


>gnl|CDD|178732 PLN03190, PLN03190, aminophospholipid translocase; Provisional.
          Length = 1178

 Score = 26.8 bits (59), Expect = 6.6
 Identities = 15/58 (25%), Positives = 34/58 (58%), Gaps = 3/58 (5%)

Query: 71  FMIITGFFKSAFFLLMLYSFIDWM-ISIMKNRAFWRAL--GVVYSGLPSIALSSLRGD 125
           +MI+  F+++A F+L+L+ ++ +   ++      W ++   V+Y+ LP+I +  L  D
Sbjct: 935 YMILYNFYRNAVFVLVLFWYVLFTCFTLTTAINEWSSVLYSVIYTALPTIVVGILDKD 992


>gnl|CDD|185297 PRK15399, PRK15399, lysine decarboxylase LdcC; Provisional.
          Length = 713

 Score = 26.6 bits (59), Expect = 7.2
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 182 VGVALLSFFCANCFELALAVSILLSVSCQLGDLF---------ESYIKRYFGIKQS 228
           VG     FF  N  +  +++S+      +LG L          E YI R FG +QS
Sbjct: 163 VGCLFYDFFGGNTLKADVSISV-----TELGSLLDHTGPHLEAEEYIARTFGAEQS 213


>gnl|CDD|181736 PRK09263, PRK09263, anaerobic ribonucleoside triphosphate
           reductase; Provisional.
          Length = 711

 Score = 26.4 bits (59), Expect = 7.4
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)

Query: 107 LGVVYSGLPSIALSSLRGDDAK 128
           LGVV   LP IAL + +GD+ K
Sbjct: 407 LGVVTLNLPRIALEA-KGDEDK 427


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.334    0.147    0.484 

Gapped
Lambda     K      H
   0.267   0.0744    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,538,050
Number of extensions: 299763
Number of successful extensions: 1497
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1470
Number of HSP's successfully gapped: 134
Length of query: 269
Length of database: 5,994,473
Length adjustment: 92
Effective length of query: 177
Effective length of database: 4,006,537
Effective search space: 709157049
Effective search space used: 709157049
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 56 (25.3 bits)