RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780774|ref|YP_003065187.1| phosphatidate
cytidylyltransferase protein [Candidatus Liberibacter asiaticus str.
psy62]
(269 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 39.9 bits (93), Expect = 6e-04
Identities = 38/254 (14%), Positives = 65/254 (25%), Gaps = 110/254 (43%)
Query: 50 GSVSLSLSEKILGLFTFFLVFFMIITGFFKSAF--------FLLMLYSFIDWMISIMKN- 100
G VS + +G F L + F++ + L D + K
Sbjct: 66 GYVSSLVEPSKVGQFDQVL---NLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL 122
Query: 101 -RAFWRALGVVYSGLPSIALSSL----RGDDAKGCVIVFFVLSVVWATDIFAYFIGRFVG 155
+ + A + + S+L +A+ + A F G
Sbjct: 123 IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQ----------------LVAIF-----G 161
Query: 156 GPKIAPKISPRKTWSGSIGGLFCGVGVGVALLSFFCANCF-ELA--------LAVSILLS 206
G G+ + F EL L ++
Sbjct: 162 G-------------QGNTD------------------DYFEELRDLYQTYHVLVGDLIKF 190
Query: 207 VSCQLGDL------FESYIKRYFGIKQSGWL-----LPGHGGVMDRVDGLVFSCFLMSA- 254
+ L +L E + I + WL P D +L+S
Sbjct: 191 SAETLSELIRTTLDAEKVFTQGLNILE--WLENPSNTPD-------KD------YLLSIP 235
Query: 255 ISFFGIATEMIGVL 268
IS +IGV+
Sbjct: 236 ISC-----PLIGVI 244
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump,
ATP-binding, hydrogen ION transport, hydrolase, ION
transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Length = 885
Score = 32.1 bits (72), Expect = 0.12
Identities = 27/224 (12%), Positives = 65/224 (29%), Gaps = 22/224 (9%)
Query: 1 MLQELKWRIVTGLVMACSFILISWIGGIWFRLWTMVMSLCIYYEWKIITGSVSLSLSEKI 60
M + + + + F+LI+ I F + +++ + + + S
Sbjct: 642 MKNYTIYAVSITIRIVFGFMLIALIWEFDFSAFMVLIIAILNDGTIMTISKDRVKPSPTP 701
Query: 61 LGLFTFFLVFFMIITGFFKSAFFLLMLYSFIDWMISIMKNRAFWRALGVVYSGLPSIALS 120
+ ++ G +++ ++ FW A + + +
Sbjct: 702 DSWKLKEIFATGVVLGGYQAIMTVIF----------------FWAAHKTDFFS-DTFGVR 744
Query: 121 SLRGDDAKGCVIVFFVLSVVWATDIFAYFIGRFVGGPKIAPKISPRKTWSGSIGGLFCGV 180
S+R ++ + V+ +S++ IF + + + I L +
Sbjct: 745 SIRDNNHELMGAVYLQVSIISQALIFVTRSRSWS----FVERPGALLMIAFLIAQLIATL 800
Query: 181 GVGVALLSFFCANCFELALA-VSILLSVSCQLGDLFESYIKRYF 223
A F A V L S+ + RY
Sbjct: 801 IAVYANWEFAKIRGIGWGWAGVIWLYSIVTYFPLDVFKFAIRYI 844
>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+,
K+-ATPase, P-type ATPase, membrane protein, hydrolase,
aluminium fluoride, ATP-binding; 6.50A {Sus scrofa}
Length = 290
Score = 28.7 bits (64), Expect = 1.2
Identities = 7/31 (22%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 63 LFTFFLVFFMIITGFFKSAFFLLMLYSFIDW 93
+ +++ F+++++G F A + +L ID
Sbjct: 40 ISLYYVAFYVVMSGIF--ALCIYVLMRTIDP 68
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type
ATPase, membrane protein, hydrolase, aluminium fluoride,
ATP-binding; 6.50A {Sus scrofa} PDB: 1iwc_A 1iwf_A
Length = 1034
Score = 28.2 bits (62), Expect = 2.2
Identities = 16/167 (9%), Positives = 39/167 (23%), Gaps = 15/167 (8%)
Query: 5 LKWRIVTGLVMACSFILISWIGGIWFRLWTMVMSLCIYYEWKIITGSVSLSLSEKILGLF 64
+ + + + W ++ + + +W+ +
Sbjct: 860 AAYSYFQIGAIQSFAGFTDYFTAMAQEGWFPLLCVGLRPQWENHHLQDLQDSYGQEWTFG 919
Query: 65 TFFLVFFMIITGFFKSAFFLLMLYSFI-------DWMISIMKNRAFWRALG--------V 109
+ T FF S + I + +NR A+ +
Sbjct: 920 QRLYQQYTCYTVFFISIEMCQIADVLIRKTRRLSAFQQGFFRNRILVIAIVFQVCIGCFL 979
Query: 110 VYSGLPSIALSSLRGDDAKGCVIVFFVLSVVWATDIFAYFIGRFVGG 156
Y + + V + F L + +I + G
Sbjct: 980 CYCPGMPNIFNFMPIRFQWWLVPMPFGLLIFVYDEIRKLGVRCCPGS 1026
>2r9r_B Paddle chimera voltage gated potassium channel KV1.2-KV2.1; voltage
sensor, voltage dependent, ION channel, shaker, membrane
protein; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB:
2a79_B*
Length = 514
Score = 27.5 bits (60), Expect = 3.1
Identities = 17/123 (13%), Positives = 41/123 (33%), Gaps = 7/123 (5%)
Query: 29 WFRLWTMVMSLCIYYEWKIITGSVSLSLSEKILGLFTFFLVFFMIITGFFKSAFFLLMLY 88
+++ ++ L I+ + G L + K L+FF+ I S+
Sbjct: 307 VVQIFRIMRILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEA 366
Query: 89 SFIDWMISIMKNRAFWRALGVVYSGLPSIALSSLRGDDAKGCVIVFFVLSVVWATDIFAY 148
D + + +W + + G + +++ G K + + V+ A
Sbjct: 367 DERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGG---KIVGSLCAIAGVL----TIAL 419
Query: 149 FIG 151
+
Sbjct: 420 PVP 422
>3kdp_B Sodium/potassium-transporting ATPase subunit beta-1; alpha
helical, heterotrimeric membrane protein complex, ATP-
binding, hydrolase, ION transport; HET: CLR; 3.50A {Sus
scrofa}
Length = 286
Score = 26.9 bits (59), Expect = 5.4
Identities = 5/31 (16%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 63 LFTFFLVFFMIITGFFKSAFFLLMLYSFIDW 93
+ F+++F+ + G F + ++ I
Sbjct: 18 ILLFYVIFYGCLAGIF--IGTIQVMLLTISE 46
>2zxe_B Na+,K+-ATPase beta subunit; membrane protein, ION pump, ATPase,
K+ binding, haloacid dehydrogenease superfamily,
phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus
acanthias} PDB: 3a3y_B* 3b8e_B*
Length = 305
Score = 26.8 bits (59), Expect = 5.5
Identities = 7/30 (23%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 63 LFTFFLVFFMIITGFFKSAFFLLMLYSFID 92
+F F+L+F+ + G F + +L +
Sbjct: 36 IFLFYLIFYGCLAGIF--IGTIQVLLLTLS 63
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward
rectifier, potassium channel, selectivity filter, metal
transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Length = 321
Score = 26.4 bits (58), Expect = 7.2
Identities = 9/91 (9%), Positives = 26/91 (28%), Gaps = 5/91 (5%)
Query: 4 ELKWRIVTGLVMACSFILISWIGGIWFRLWTMVMSLCI-----YYEWKIITGSVSLSLSE 58
+LKWR + +L + ++ + + + + + T +
Sbjct: 39 DLKWRWFFVSLAVLFLLLNTAFATLYMLGSAPIANQFPAGFGGAFFFSVETLATVGYGDM 98
Query: 59 KILGLFTFFLVFFMIITGFFKSAFFLLMLYS 89
++ ++ I G A +
Sbjct: 99 HPQTVYAHWIATLEIFVGMSSIALATGCAFI 129
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.334 0.147 0.484
Gapped
Lambda K H
0.267 0.0497 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,446,093
Number of extensions: 111068
Number of successful extensions: 545
Number of sequences better than 10.0: 1
Number of HSP's gapped: 533
Number of HSP's successfully gapped: 69
Length of query: 269
Length of database: 5,693,230
Length adjustment: 91
Effective length of query: 178
Effective length of database: 3,487,026
Effective search space: 620690628
Effective search space used: 620690628
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 56 (25.9 bits)