RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780774|ref|YP_003065187.1| phosphatidate
cytidylyltransferase protein [Candidatus Liberibacter asiaticus str.
psy62]
         (269 letters)



>d2e2aa_ a.7.2.1 (A:) Enzyme IIa from lactose specific PTS, IIa-lac
           {Lactococcus lactis [TaxId: 1358]}
          Length = 104

 Score = 26.1 bits (58), Expect = 3.5
 Identities = 5/19 (26%), Positives = 9/19 (47%)

Query: 251 LMSAISFFGIATEMIGVLK 269
           LM+ I    +   +I + K
Sbjct: 83  LMTTILLKDVIHHLIELYK 101


>d1mqoa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacillus cereus
           [TaxId: 1396]}
          Length = 221

 Score = 24.9 bits (53), Expect = 8.3
 Identities = 8/53 (15%), Positives = 16/53 (30%)

Query: 189 FFCANCFELALAVSILLSVSCQLGDLFESYIKRYFGIKQSGWLLPGHGGVMDR 241
                  +   A  +       + +   S        +    ++PGHG V D+
Sbjct: 158 LVGGCLVKSTSAKDLGNVADAYVNEWSTSIENVLKRYRNINAVVPGHGEVGDK 210


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.334    0.147    0.484 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,071,615
Number of extensions: 49560
Number of successful extensions: 266
Number of sequences better than 10.0: 1
Number of HSP's gapped: 259
Number of HSP's successfully gapped: 45
Length of query: 269
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 185
Effective length of database: 1,254,276
Effective search space: 232041060
Effective search space used: 232041060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 52 (24.0 bits)