BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780774|ref|YP_003065187.1| phosphatidate
cytidylyltransferase protein [Candidatus Liberibacter asiaticus str.
psy62]
         (269 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780774|ref|YP_003065187.1| phosphatidate cytidylyltransferase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 269

 Score =  525 bits (1351), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 269/269 (100%), Positives = 269/269 (100%)

Query: 1   MLQELKWRIVTGLVMACSFILISWIGGIWFRLWTMVMSLCIYYEWKIITGSVSLSLSEKI 60
           MLQELKWRIVTGLVMACSFILISWIGGIWFRLWTMVMSLCIYYEWKIITGSVSLSLSEKI
Sbjct: 1   MLQELKWRIVTGLVMACSFILISWIGGIWFRLWTMVMSLCIYYEWKIITGSVSLSLSEKI 60

Query: 61  LGLFTFFLVFFMIITGFFKSAFFLLMLYSFIDWMISIMKNRAFWRALGVVYSGLPSIALS 120
           LGLFTFFLVFFMIITGFFKSAFFLLMLYSFIDWMISIMKNRAFWRALGVVYSGLPSIALS
Sbjct: 61  LGLFTFFLVFFMIITGFFKSAFFLLMLYSFIDWMISIMKNRAFWRALGVVYSGLPSIALS 120

Query: 121 SLRGDDAKGCVIVFFVLSVVWATDIFAYFIGRFVGGPKIAPKISPRKTWSGSIGGLFCGV 180
           SLRGDDAKGCVIVFFVLSVVWATDIFAYFIGRFVGGPKIAPKISPRKTWSGSIGGLFCGV
Sbjct: 121 SLRGDDAKGCVIVFFVLSVVWATDIFAYFIGRFVGGPKIAPKISPRKTWSGSIGGLFCGV 180

Query: 181 GVGVALLSFFCANCFELALAVSILLSVSCQLGDLFESYIKRYFGIKQSGWLLPGHGGVMD 240
           GVGVALLSFFCANCFELALAVSILLSVSCQLGDLFESYIKRYFGIKQSGWLLPGHGGVMD
Sbjct: 181 GVGVALLSFFCANCFELALAVSILLSVSCQLGDLFESYIKRYFGIKQSGWLLPGHGGVMD 240

Query: 241 RVDGLVFSCFLMSAISFFGIATEMIGVLK 269
           RVDGLVFSCFLMSAISFFGIATEMIGVLK
Sbjct: 241 RVDGLVFSCFLMSAISFFGIATEMIGVLK 269


>gi|254781033|ref|YP_003065446.1| HemY domain-containing protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 492

 Score = 29.3 bits (64), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 24  WIGGIWFRLWTMVMSLCIYYEWKIITGSVSLSLSEKI 60
           ++  +W  L  +  +LC Y+EWKI T S     SE I
Sbjct: 400 YLSSVWLPLSPISKTLC-YFEWKIPTKSPEYISSENI 435


>gi|254781206|ref|YP_003065619.1| hypothetical protein CLIBASIA_05565 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1246

 Score = 25.0 bits (53), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 54  LSLSEKIL-GLFTFFLVFFMIITGFFKSAFFLLMLYSFIDWMISIMKNRAFW 104
           +S SEKIL G +TF  +  + +   F S++  L    + DW  + +K   +W
Sbjct: 806 ISGSEKILQGDYTFPPLSSLDVQSKFDSSYSKLFEIFYGDWTNNAIKEERYW 857


>gi|254780799|ref|YP_003065212.1| DNA translocase FtsK [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 806

 Score = 22.3 bits (46), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 6  KWRIVTGLVMACSFILISWIGGIW 29
          K +IV GL++ C+   I+   G W
Sbjct: 25 KMKIVAGLILLCTVFAITLALGTW 48


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.334    0.147    0.484 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 174,164
Number of Sequences: 1233
Number of extensions: 7183
Number of successful extensions: 42
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 36
Number of HSP's gapped (non-prelim): 11
length of query: 269
length of database: 328,796
effective HSP length: 72
effective length of query: 197
effective length of database: 240,020
effective search space: 47283940
effective search space used: 47283940
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 37 (18.9 bits)