HHsearch alignment for GI: 254780775 and conserved domain: COG0020
>COG0020 UppS Undecaprenyl pyrophosphate synthase [Lipid metabolism].
Probab=100.00 E-value=0 Score=594.99 Aligned_cols=231 Identities=47% Similarity=0.857 Sum_probs=228.7
Q ss_pred CCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 98826999848851899975998779899999999999999997698689997202336532301248888988863100
Q gi|254780775|r 9 SPPDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKK 88 (243)
Q Consensus 9 ~~P~HIaiImDGNrRwAk~~gl~~~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~ 88 (243)
T Consensus 15 ~~p~HvaiImDGN~RwAk~~~~~r~~Gh~~G~~~~~~i~~~~~~lgik~ltlyafSteN~~Rp~~Ev~~lm~l~~~~l~~ 94 (245)
T COG0020 15 RLPRHVAIIMDGNRRWAKKRGLPRIEGHKAGAKALREILEWCLELGIKYLTLYAFSTENWKRPKEEVSFLMELFEKALRE 94 (245)
T ss_pred CCCCCEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 46351688756876799867997457788768999999999998198889999984664188989999999999999999
Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 00100002832631387445100002358999874202543115897248815789987787643676489687781155
Q gi|254780775|r 89 GFYSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGLNLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHDVDSS 168 (243)
Q Consensus 89 ~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~k~l~~~~~~~~~~~~~I~~~ 168 (243)
T Consensus 95 ~~~~l~~~~v~v~~iG~~~~l~~~~~~~i~~~e~~t~~~~~~~l~~a~nYGGR~eI~~avr~ia~~v~~g~l~~~~I~e~ 174 (245)
T COG0020 95 ELKKLHKNGVRIRIIGDLSRLPEEVREAIEKAEEKTKNNTGLTLNIAVNYGGRDEIVDAVRKIAEDVAAGKLSPEDIDEE 174 (245)
T ss_pred HHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHCCHH
T ss_conf 88888666749999713021988999998999984457896599985378988999999999999987189896876899
Q ss_pred HHCCCCCCCCCCCCCEEEECCCCEECCCCCCCHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 31011336787765269945785213365640113553886368788889899999999986300505884
Q gi|254780775|r 169 LIAKYLDTSDVPDPDLIIRTGGEKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFGGL 239 (243)
Q Consensus 169 ~i~~~L~~~~~p~pDLlIRTsGe~RLSnFllwq~~ysEl~F~~~lWPdf~~~dl~~~i~~y~~r~RrfG~~ 239 (243)
T Consensus 175 ~i~~~L~~~~~pdpDLlIRTsGe~RlSnFllWQ~aYsElyF~d~lWPdf~~~d~~~ai~~yq~R~rrfG~~ 245 (245)
T COG0020 175 LISSHLYTSGLPDPDLLIRTSGEQRLSNFLLWQSAYSELYFTDVLWPDFRREDLLRAIRDYQKRERRFGRV 245 (245)
T ss_pred HHHHHHCCCCCCCCCEEEECCCCCCCCCCHHHHHHHCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99975353579899889967883021254788887264885526689998999999999998461004699