HHsearch alignment for GI: 254780775 and conserved domain: TIGR00055
>TIGR00055 uppS undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2.5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) . This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts.; GO: 0016740 transferase activity, 0008152 metabolic process.
Probab=100.00 E-value=0 Score=679.50 Aligned_cols=228 Identities=41% Similarity=0.776 Sum_probs=225.6
Q ss_pred CCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHH--
Q ss_conf 882699984885189997599877989999999999999999769868999720233653230124888898886310--
Q gi|254780775|r 10 PPDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLK-- 87 (243)
Q Consensus 10 ~P~HIaiImDGNrRwAk~~gl~~~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~-- 87 (243)
T Consensus 1 ~P~HVa~IMDGNgRwAk~~~k~r~~GH~~G~~~l~~~l~~c~~~Gv~~lTlYAFS~ENw~RP~~EV~~LM~Lf~~~L~ei 80 (237)
T TIGR00055 1 VPKHVAIIMDGNGRWAKKKGKDRKYGHEAGVKSLRRILRWCADLGVECLTLYAFSTENWKRPKEEVDALMELFEKKLDEI 80 (237)
T ss_pred CCCEEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 98426787176169998538834455687789999999999866930575332100025797788999999999999997
Q ss_pred --HCCCCCCC-CCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf --00010000-283263138744510000235899987420254311589724881578998778764367648968778
Q gi|254780775|r 88 --KGFYSLKK-NNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGLNLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHD 164 (243)
Q Consensus 88 --~~~~~~~~-~~iki~~iGd~~~lp~~i~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~k~l~~~~~~~~~~~~~ 164 (243)
T Consensus 81 a~re~~~~~~l~nvR~RiiGd~s~l~~~Lq~~I~~~ee~T~~n~~~tl~iA~nYGGr~ei~~a~k~~~e~v~~g~~~~~~ 160 (237)
T TIGR00055 81 AEREVKELHKLYNVRIRIIGDLSLLSKELQEKIKKAEEDTKNNTDFTLNIAFNYGGRNEILHAVKQIAEKVKKGKLEPED 160 (237)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 47899853402380589985565689889999999997412788479998507898688999999987630026888644
Q ss_pred HHHHHHCCCCCCCCCC-C-CCEEEECCCCEECCCCCCCHHCC-CE-EEECCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 1155310113367877-6-52699457852133656401135-53-8863687888898999999999863005058
Q gi|254780775|r 165 VDSSLIAKYLDTSDVP-D-PDLIIRTGGEKRLSDFLLWQVAY-SE-FVFIPEYWPDFSRELFFHALNQYNLRDRRFG 237 (243)
Q Consensus 165 I~~~~i~~~L~~~~~p-~-pDLlIRTsGe~RLSnFllwq~~y-sE-l~F~~~lWPdf~~~dl~~~i~~y~~r~RrfG 237 (243)
T Consensus 161 Id~~~~~~hl~T~~lpf~n~DLLIRTSGe~RiSnFLLWQ~~y~Aerlyf~D~LWPdF~~~~f~~~~~~f~~R~rrFg 237 (237)
T TIGR00055 161 IDEETLEKHLYTAGLPFPNVDLLIRTSGEERISNFLLWQISYKAERLYFTDILWPDFDRQDFELAILDFQFRHRRFG 237 (237)
T ss_pred HHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 32888876543127888886613545874025788999887607257753454899998999999999862110269