Query gi|254780775|ref|YP_003065188.1| undecaprenyl diphosphate synthase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 243
No_of_seqs 140 out of 2926
Neff 6.6
Searched_HMMs 39220
Date Sun May 29 18:50:45 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780775.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00055 uppS undecaprenyl di 100.0 0 0 679.5 19.2 228 10-237 1-237 (237)
2 cd00475 CIS_IPPS Cis (Z)-Isopr 100.0 0 0 613.9 21.3 221 11-231 1-221 (221)
3 PRK10240 undecaprenyl pyrophos 100.0 0 0 612.1 21.3 224 18-241 1-224 (229)
4 pfam01255 Prenyltransf Putativ 100.0 0 0 597.4 20.1 222 17-238 1-222 (222)
5 COG0020 UppS Undecaprenyl pyro 100.0 0 0 595.0 21.3 231 9-239 15-245 (245)
6 KOG1602 consensus 100.0 0 0 567.9 18.3 238 4-242 30-270 (271)
7 KOG2818 consensus 99.5 5.9E-14 1.5E-18 110.2 7.8 200 8-238 62-263 (263)
8 pfam01261 AP_endonuc_2 Xylose 85.0 3.6 9.3E-05 22.2 7.7 78 21-102 31-121 (201)
9 TIGR01503 MthylAspMut_E methyl 77.8 4.6 0.00012 21.5 4.5 109 50-188 173-287 (481)
10 cd00008 53EXOc 5'-3' exonuclea 75.8 2.4 6.1E-05 23.4 2.6 71 3-83 42-117 (240)
11 PRK13210 putative L-xylulose 5 74.6 7.9 0.0002 20.0 8.3 83 15-103 70-152 (284)
12 PRK05431 seryl-tRNA synthetase 72.3 6.4 0.00016 20.7 4.1 57 142-198 69-135 (422)
13 pfam11977 RNase_Zc3h12a Zc3h12 64.0 13 0.00034 18.6 5.8 67 15-86 4-72 (155)
14 KOG0207 consensus 63.5 7.9 0.0002 20.1 3.1 85 17-105 672-793 (951)
15 PRK02308 uvsE putative UV dama 63.3 14 0.00035 18.5 8.4 108 37-147 45-168 (316)
16 COG0172 SerS Seryl-tRNA synthe 59.7 11 0.00028 19.2 3.2 11 96-106 121-131 (429)
17 COG4865 Glutamate mutase epsil 59.7 11 0.00029 19.0 3.3 83 53-151 177-265 (485)
18 PRK11557 putative DNA-binding 57.7 17 0.00044 17.9 4.9 92 129-229 179-271 (282)
19 TIGR00514 accC acetyl-CoA carb 55.1 13 0.00033 18.7 3.0 21 41-61 12-32 (451)
20 smart00475 53EXOc 5'-3' exonuc 53.4 9.4 0.00024 19.6 2.0 71 3-84 41-117 (259)
21 PRK07625 consensus 51.5 22 0.00055 17.3 4.3 21 2-22 45-65 (922)
22 TIGR00539 hemN_rel putative ox 50.2 15 0.00038 18.3 2.6 29 39-67 171-199 (371)
23 KOG0013 consensus 48.3 14 0.00036 18.4 2.3 27 133-159 53-79 (231)
24 PRK01713 ornithine carbamoyltr 47.5 20 0.00052 17.5 3.0 103 96-218 155-279 (334)
25 pfam10980 DUF2787 Protein of u 46.3 16 0.0004 18.2 2.3 36 176-218 37-74 (128)
26 TIGR01931 cysJ sulfite reducta 45.6 20 0.00052 17.4 2.8 28 96-123 574-601 (628)
27 PRK03501 ppnK inorganic polyph 44.3 28 0.00071 16.6 4.0 19 40-58 16-34 (264)
28 cd00003 PNPsynthase Pyridoxine 44.2 28 0.00071 16.6 3.6 52 5-61 78-129 (234)
29 pfam04858 TH1 TH1 protein. TH1 44.1 9.6 0.00025 19.5 0.9 55 129-188 270-324 (582)
30 TIGR00417 speE spermidine synt 43.6 14 0.00036 18.5 1.7 66 4-102 69-136 (284)
31 KOG1620 consensus 42.7 26 0.00067 16.8 2.9 107 102-233 72-180 (284)
32 TIGR02275 DHB_AMP_lig 2,3-dihy 42.5 12 0.0003 19.0 1.1 70 118-191 137-211 (534)
33 pfam02739 5_3_exonuc_N 5'-3' e 41.3 20 0.0005 17.6 2.1 40 106-146 77-116 (169)
34 PRK02102 ornithine carbamoyltr 40.2 21 0.00055 17.3 2.2 91 96-204 154-256 (331)
35 TIGR01457 HAD-SF-IIA-hyp2 HAD- 38.8 21 0.00053 17.4 1.9 64 37-105 13-92 (251)
36 PRK07997 consensus 38.8 34 0.00086 16.0 3.7 20 2-21 46-65 (928)
37 smart00281 LamB Laminin B doma 38.0 35 0.00089 16.0 4.0 51 180-231 41-101 (127)
38 cd06204 CYPOR NADPH cytochrome 37.3 36 0.00091 15.9 5.7 11 43-53 92-102 (416)
39 smart00549 TAFH TAF homology. 35.4 34 0.00086 16.0 2.6 42 140-184 20-61 (92)
40 PRK09482 xni exonuclease IX; P 35.3 29 0.00073 16.5 2.2 55 3-61 39-104 (256)
41 PRK13209 L-xylulose 5-phosphat 35.0 39 0.00099 15.7 8.1 96 16-122 76-172 (283)
42 PRK11337 DNA-binding transcrip 34.3 40 0.001 15.6 4.1 90 128-228 187-279 (293)
43 cd00408 DHDPS-like Dihydrodipi 34.3 40 0.001 15.6 9.0 104 40-155 17-122 (281)
44 COG1246 ArgA N-acetylglutamate 33.4 31 0.00079 16.3 2.1 33 31-65 75-107 (153)
45 PRK09039 hypothetical protein; 33.2 41 0.0011 15.5 3.4 16 177-192 255-271 (343)
46 PRK05904 coproporphyrinogen II 32.6 42 0.0011 15.4 5.7 44 43-87 42-87 (353)
47 pfam05094 LEF-9 Late expressio 31.9 25 0.00065 16.8 1.5 35 160-201 84-119 (487)
48 COG0218 Predicted GTPase [Gene 31.5 27 0.00069 16.7 1.6 14 217-230 183-196 (200)
49 pfam10163 EnY2 Transcription f 31.4 43 0.0011 15.3 2.6 47 104-168 14-60 (86)
50 PTZ00339 UDP-N-acetylglucosami 30.6 46 0.0012 15.2 4.3 52 10-72 222-274 (499)
51 TIGR02401 trehalose_TreY malto 30.2 14 0.00037 18.4 -0.0 17 10-26 93-110 (971)
52 PRK03515 ornithine carbamoyltr 30.2 46 0.0012 15.2 4.7 88 96-202 155-256 (334)
53 pfam03851 UvdE UV-endonuclease 29.8 47 0.0012 15.1 8.8 110 36-149 39-166 (275)
54 PRK05265 pyridoxine 5'-phospha 29.7 47 0.0012 15.1 3.6 51 7-62 83-133 (240)
55 COG0635 HemN Coproporphyrinoge 29.3 48 0.0012 15.1 3.8 29 40-68 203-231 (416)
56 PRK08786 consensus 29.0 42 0.0011 15.4 2.2 18 4-22 43-60 (927)
57 cd03770 SR_TndX_transposase Se 28.8 49 0.0012 15.0 5.4 76 40-128 20-100 (140)
58 COG2056 Predicted permease [Ge 28.6 25 0.00064 16.9 1.0 46 3-57 112-157 (444)
59 TIGR01979 sufS cysteine desulf 28.4 39 0.001 15.6 2.0 44 182-227 113-162 (409)
60 PHA01748 hypothetical protein 28.0 51 0.0013 14.9 3.3 22 23-44 19-40 (60)
61 cd06200 SiR_like1 Cytochrome p 27.1 53 0.0013 14.8 4.6 25 96-120 201-225 (245)
62 cd03330 Macro_2 Macro domain, 27.0 53 0.0013 14.8 4.6 23 51-73 100-122 (133)
63 pfam01228 Gly_radical Glycine 26.8 53 0.0014 14.8 2.9 11 181-191 91-101 (106)
64 PRK08446 coproporphyrinogen II 26.8 53 0.0014 14.8 4.8 27 40-66 165-191 (351)
65 pfam07531 TAFH NHR1 homology t 26.2 54 0.0014 14.7 2.6 43 140-185 21-63 (96)
66 COG0641 AslB Arylsulfatase reg 26.0 55 0.0014 14.7 5.4 67 7-82 112-183 (378)
67 PRK11302 DNA-binding transcrip 25.6 56 0.0014 14.7 4.0 91 129-229 175-266 (284)
68 TIGR02471 sucr_syn_bact_C sucr 24.8 40 0.001 15.6 1.5 25 178-216 55-79 (241)
69 TIGR00020 prfB peptide chain r 24.2 14 0.00034 18.6 -1.0 10 23-32 160-169 (373)
70 PRK07556 consensus 24.0 60 0.0015 14.5 2.4 52 9-60 59-115 (977)
71 pfam03579 SHP Small hydrophobi 23.9 41 0.001 15.5 1.4 25 205-229 6-30 (64)
72 PRK13907 rnhA ribonuclease H; 23.9 56 0.0014 14.6 2.1 58 7-64 12-70 (128)
73 PRK07300 consensus 23.6 42 0.0011 15.5 1.4 22 1-22 47-68 (880)
74 PRK05755 DNA polymerase I; Pro 23.3 54 0.0014 14.8 1.9 58 2-62 44-109 (889)
75 TIGR02128 G6PI_arch bifunction 23.1 57 0.0014 14.6 2.0 22 130-151 73-95 (338)
76 cd06182 CYPOR_like NADPH cytoc 23.1 62 0.0016 14.3 5.9 24 97-120 214-237 (267)
77 PRK06294 coproporphyrinogen II 23.0 62 0.0016 14.3 5.5 30 39-68 168-197 (374)
78 COG4401 AroH Chorismate mutase 22.1 58 0.0015 14.5 1.9 33 138-170 14-47 (125)
79 PRK05929 consensus 21.9 66 0.0017 14.2 3.2 19 2-20 41-59 (870)
80 COG1717 RPL32 Ribosomal protei 21.8 66 0.0017 14.2 3.1 42 109-152 79-122 (133)
81 TIGR03280 methan_mark_11 putat 21.7 44 0.0011 15.3 1.2 47 109-155 170-216 (292)
82 cd02907 Macro_Af1521_BAL_like 21.6 67 0.0017 14.2 5.7 50 40-89 98-148 (175)
83 TIGR01803 CM-like chorismate m 21.6 18 0.00045 17.8 -0.9 29 6-34 38-66 (82)
84 PRK12771 putative glutamate sy 21.0 69 0.0018 14.1 5.0 52 8-79 264-316 (560)
85 pfam03041 Baculo_LEF-2 lef-2. 20.9 60 0.0015 14.4 1.7 59 92-153 37-99 (164)
86 PRK10975 TDP-fucosamine acetyl 20.4 54 0.0014 14.7 1.4 45 181-228 137-185 (231)
87 KOG0791 consensus 20.4 34 0.00086 16.1 0.3 39 195-233 239-286 (374)
88 TIGR02109 PQQ_syn_pqqE coenzym 20.2 71 0.0018 14.0 3.1 73 31-112 122-199 (363)
89 COG0731 Fe-S oxidoreductases [ 20.2 71 0.0018 14.0 4.0 39 9-64 78-116 (296)
90 pfam00052 Laminin_B Laminin B 20.1 72 0.0018 14.0 4.2 52 180-232 34-98 (135)
No 1
>TIGR00055 uppS undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2.5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) . This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts.; GO: 0016740 transferase activity, 0008152 metabolic process.
Probab=100.00 E-value=0 Score=679.50 Aligned_cols=228 Identities=41% Similarity=0.776 Sum_probs=225.6
Q ss_pred CCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHH--
Q ss_conf 882699984885189997599877989999999999999999769868999720233653230124888898886310--
Q gi|254780775|r 10 PPDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLK-- 87 (243)
Q Consensus 10 ~P~HIaiImDGNrRwAk~~gl~~~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~-- 87 (243)
+|+||||||||||||||++|+++..||++|+++|.+++.||.++||+.||+||||||||+||++||++||.|+...|+
T Consensus 1 ~P~HVa~IMDGNgRwAk~~~k~r~~GH~~G~~~l~~~l~~c~~~Gv~~lTlYAFS~ENw~RP~~EV~~LM~Lf~~~L~ei 80 (237)
T TIGR00055 1 VPKHVAIIMDGNGRWAKKKGKDRKYGHEAGVKSLRRILRWCADLGVECLTLYAFSTENWKRPKEEVDALMELFEKKLDEI 80 (237)
T ss_pred CCCEEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 98426787176169998538834455687789999999999866930575332100025797788999999999999997
Q ss_pred --HCCCCCCC-CCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf --00010000-283263138744510000235899987420254311589724881578998778764367648968778
Q gi|254780775|r 88 --KGFYSLKK-NNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGLNLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHD 164 (243)
Q Consensus 88 --~~~~~~~~-~~iki~~iGd~~~lp~~i~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~k~l~~~~~~~~~~~~~ 164 (243)
++...+.+ +|||||+|||++.||+.+++.|.++|+.|++|++++||||+|||||+||++|+|+++++++.|...+++
T Consensus 81 a~re~~~~~~l~nvR~RiiGd~s~l~~~Lq~~I~~~ee~T~~n~~~tl~iA~nYGGr~ei~~a~k~~~e~v~~g~~~~~~ 160 (237)
T TIGR00055 81 AEREVKELHKLYNVRIRIIGDLSLLSKELQEKIKKAEEDTKNNTDFTLNIAFNYGGRNEILHAVKQIAEKVKKGKLEPED 160 (237)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 47899853402380589985565689889999999997412788479998507898688999999987630026888644
Q ss_pred HHHHHHCCCCCCCCCC-C-CCEEEECCCCEECCCCCCCHHCC-CE-EEECCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 1155310113367877-6-52699457852133656401135-53-8863687888898999999999863005058
Q gi|254780775|r 165 VDSSLIAKYLDTSDVP-D-PDLIIRTGGEKRLSDFLLWQVAY-SE-FVFIPEYWPDFSRELFFHALNQYNLRDRRFG 237 (243)
Q Consensus 165 I~~~~i~~~L~~~~~p-~-pDLlIRTsGe~RLSnFllwq~~y-sE-l~F~~~lWPdf~~~dl~~~i~~y~~r~RrfG 237 (243)
|+++++.+||||.++| | ||||||||||+|||||||||+|| || |||+|+|||||+..||..||.+||+|.||||
T Consensus 161 Id~~~~~~hl~T~~lpf~n~DLLIRTSGe~RiSnFLLWQ~~y~Aerlyf~D~LWPdF~~~~f~~~~~~f~~R~rrFg 237 (237)
T TIGR00055 161 IDEETLEKHLYTAGLPFPNVDLLIRTSGEERISNFLLWQISYKAERLYFTDILWPDFDRQDFELAILDFQFRHRRFG 237 (237)
T ss_pred HHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 32888876543127888886613545874025788999887607257753454899998999999999862110269
No 2
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=100.00 E-value=0 Score=613.95 Aligned_cols=221 Identities=43% Similarity=0.787 Sum_probs=218.8
Q ss_pred CCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 82699984885189997599877989999999999999999769868999720233653230124888898886310000
Q gi|254780775|r 11 PDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGF 90 (243)
Q Consensus 11 P~HIaiImDGNrRwAk~~gl~~~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~ 90 (243)
|+|||||||||||||+++|++..+||++|++++.++++||.++||++|||||||+|||+||++||++||+|+..++++..
T Consensus 1 P~HiaiImDGNrRwA~~~g~~~~~Gh~~G~~~~~~i~~~~~~~gI~~lTvyafStEN~~R~~~Ev~~Lm~L~~~~l~~~~ 80 (221)
T cd00475 1 PKHVAFIMDGNRRWAKQRGMDRIEGHKAGAEKLRDILRWCLELGVKEVTLYAFSTENWKRPKEEVDFLMELFRDVLRRIL 80 (221)
T ss_pred CCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 98799963486999987799878999999999999999999859998999981177767769999999999999999989
Q ss_pred CCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 10000283263138744510000235899987420254311589724881578998778764367648968778115531
Q gi|254780775|r 91 YSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGLNLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHDVDSSLI 170 (243)
Q Consensus 91 ~~~~~~~iki~~iGd~~~lp~~i~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~k~l~~~~~~~~~~~~~I~~~~i 170 (243)
+.+.+++|||+|+||++.||+++++.+.++|+.|++|++++||||++||||+||++|+++++++++.+.+++++|+++.+
T Consensus 81 ~~~~~~~iri~~iG~~~~Lp~~l~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EIv~A~k~i~~~~~~~~~~~~~i~~~~~ 160 (221)
T cd00475 81 KELEKLGVRIRIIGDLSLLPESLQKEIKKAEEATKNNTGFTLNVAFNYGGRQEIIHAVREIAEKVKAGKLTPEDIDESTL 160 (221)
T ss_pred HHHHHCCEEEEEEECHHHCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99998897999994720089899999999997614898105999973698899999999999999808999678678887
Q ss_pred CCCCCCCCCCCCCEEEECCCCEECCCCCCCHHCCCEEEECCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 0113367877652699457852133656401135538863687888898999999999863
Q gi|254780775|r 171 AKYLDTSDVPDPDLIIRTGGEKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNL 231 (243)
Q Consensus 171 ~~~L~~~~~p~pDLlIRTsGe~RLSnFllwq~~ysEl~F~~~lWPdf~~~dl~~~i~~y~~ 231 (243)
.++||++++||||||||||||+|||||||||++||||||+|++||||+..||..||.+||+
T Consensus 161 ~~~L~~~~~p~pDLlIRTsGe~RLSnFLlwq~ayaEl~F~~~lWPdF~~~dl~~ai~~y~k 221 (221)
T cd00475 161 NKHLYTHDSPDPDLLIRTSGEQRLSNFLLWQSAYSELYFSDVLWPDFTFWDFLRALLDYQR 221 (221)
T ss_pred HHCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHCEEEEECCCCCCCCCHHHHHHHHHHHCC
T ss_conf 7407789999767788548961112405654414368977898877999999999999719
No 3
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=0 Score=612.13 Aligned_cols=224 Identities=38% Similarity=0.708 Sum_probs=221.8
Q ss_pred CCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 48851899975998779899999999999999997698689997202336532301248888988863100001000028
Q gi|254780775|r 18 MDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNN 97 (243)
Q Consensus 18 mDGNrRwAk~~gl~~~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~ 97 (243)
||||||||+++|+++..||++|++++.++++||.++||++|||||||+|||+||++||++||+|+..++++..+.+.+++
T Consensus 1 MDGNrRWAk~~gl~~~~GH~~G~~~l~~iv~~~~~~gI~~lTlyaFStENw~R~~~EV~~Lm~L~~~~l~~~~~~l~~~~ 80 (229)
T PRK10240 1 MDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRHN 80 (229)
T ss_pred CCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 98638999887998789999999999999999998699989999608766499979999999999999999999999879
Q ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 32631387445100002358999874202543115897248815789987787643676489687781155310113367
Q gi|254780775|r 98 IKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGLNLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHDVDSSLIAKYLDTS 177 (243)
Q Consensus 98 iki~~iGd~~~lp~~i~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~k~l~~~~~~~~~~~~~I~~~~i~~~L~~~ 177 (243)
|+|+||||++.||+++++.|.++|+.|++|++++||||+|||||+||++|+++++++++++.+.+++|+++.+.++|+++
T Consensus 81 iri~~iGd~~~Lp~~l~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~~~i~~~~~~~~~~~~~i~~~~~~~~l~~~ 160 (229)
T PRK10240 81 VRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHVCMH 160 (229)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHCCCCC
T ss_conf 48999644100675899999999997455886289997378877999999999999998378991331788876314667
Q ss_pred CCCCCCEEEECCCCEECCCCCCCHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 8776526994578521336564011355388636878888989999999998630050588465
Q gi|254780775|r 178 DVPDPDLIIRTGGEKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFGGLSK 241 (243)
Q Consensus 178 ~~p~pDLlIRTsGe~RLSnFllwq~~ysEl~F~~~lWPdf~~~dl~~~i~~y~~r~RrfG~~~~ 241 (243)
++||||||||||||+|||||||||++||||||+++|||||+..||..||.+|++|+|||||+.+
T Consensus 161 ~~p~pDLlIRTsGe~RLSnFLLwQ~ayaEl~F~~~lWPdF~~~dl~~al~~y~~R~RrfGg~~~ 224 (229)
T PRK10240 161 ELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRERRFGGTEP 224 (229)
T ss_pred CCCCCCEEEECCCCEECCCHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 8999675885488631243133223450488778888779999999999998543476899999
No 4
>pfam01255 Prenyltransf Putative undecaprenyl diphosphate synthase. Previously known as uncharacterized protein family UPF0015, a single member of this family has been identified as an undecaprenyl diphosphate synthase.
Probab=100.00 E-value=0 Score=597.36 Aligned_cols=222 Identities=50% Similarity=0.891 Sum_probs=219.6
Q ss_pred ECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 84885189997599877989999999999999999769868999720233653230124888898886310000100002
Q gi|254780775|r 17 IMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKN 96 (243)
Q Consensus 17 ImDGNrRwAk~~gl~~~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~ 96 (243)
|||||||||+++|++..+||++|++++.++++||.++||++|||||||+|||+||++||++||+|+.+++++..+.+.++
T Consensus 1 ImDGNrRwAk~~~l~~~~Gh~~G~~~~~~i~~~c~~~gI~~lTvyaFStEN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~ 80 (222)
T pfam01255 1 IMDGNRRWAKKRGLPRTEGHRAGAEALREILEWCLELGIKYLTLYAFSTENWKRPKEEVDFLMELLEEKLRRLLEDLHKN 80 (222)
T ss_pred CCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 98287999988799877999999999999999999869998972641787549998999999999999999999999986
Q ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCC
Q ss_conf 83263138744510000235899987420254311589724881578998778764367648968778115531011336
Q gi|254780775|r 97 NIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGLNLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHDVDSSLIAKYLDT 176 (243)
Q Consensus 97 ~iki~~iGd~~~lp~~i~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~k~l~~~~~~~~~~~~~I~~~~i~~~L~~ 176 (243)
+|+|+|+||++.||+++++.+.++|+.|++|++++||||++||||+||++|+++++++++++.+++++|+++.+.+|||+
T Consensus 81 ~iki~~iG~~~~Lp~~l~~~i~~~e~~T~~n~~~~lnia~~Yggr~EI~~Av~~i~~~~~~~~~~~~~i~~~~i~~~l~~ 160 (222)
T pfam01255 81 GVRVRVIGDLSLLPEDLRKAIEDAEEATKNNTGLTLNIALNYGGRDEIVDAVKRLAEDVKDGKLSPEDIDEEVIEKYLYT 160 (222)
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHCCCC
T ss_conf 93899952655689899999999999715788549999853797799999999999999818999212148999870767
Q ss_pred CCCCCCCEEEECCCCEECCCCCCCHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 78776526994578521336564011355388636878888989999999998630050588
Q gi|254780775|r 177 SDVPDPDLIIRTGGEKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFGG 238 (243)
Q Consensus 177 ~~~p~pDLlIRTsGe~RLSnFllwq~~ysEl~F~~~lWPdf~~~dl~~~i~~y~~r~RrfG~ 238 (243)
+++||||||||||||+|||||||||++||||||++++||||+..||..||.+|++|+||||+
T Consensus 161 ~~~p~~DLlIRTsGe~RLSnFllwQ~aysel~F~~~lWPdf~~~dl~~ai~~y~~r~RrfGk 222 (222)
T pfam01255 161 SDLPDPDLLIRTSGEKRLSNFLLWQSAYAELYFTDTLWPDFTKEDLLRAIRDYQSRERRFGK 222 (222)
T ss_pred CCCCCCCEEEECCCCHHCCCCHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 89999776885488401235202310472599778888769999999999999751155799
No 5
>COG0020 UppS Undecaprenyl pyrophosphate synthase [Lipid metabolism]
Probab=100.00 E-value=0 Score=594.99 Aligned_cols=231 Identities=47% Similarity=0.857 Sum_probs=228.7
Q ss_pred CCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 98826999848851899975998779899999999999999997698689997202336532301248888988863100
Q gi|254780775|r 9 SPPDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKK 88 (243)
Q Consensus 9 ~~P~HIaiImDGNrRwAk~~gl~~~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~ 88 (243)
++|+|||||||||||||+++|++...||+.|.+++.++++||.++||++||+||||+|||+||+.||++||+++..++.+
T Consensus 15 ~~p~HvaiImDGN~RwAk~~~~~r~~Gh~~G~~~~~~i~~~~~~lgik~ltlyafSteN~~Rp~~Ev~~lm~l~~~~l~~ 94 (245)
T COG0020 15 RLPRHVAIIMDGNRRWAKKRGLPRIEGHKAGAKALREILEWCLELGIKYLTLYAFSTENWKRPKEEVSFLMELFEKALRE 94 (245)
T ss_pred CCCCCEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 46351688756876799867997457788768999999999998198889999984664188989999999999999999
Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 00100002832631387445100002358999874202543115897248815789987787643676489687781155
Q gi|254780775|r 89 GFYSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGLNLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHDVDSS 168 (243)
Q Consensus 89 ~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~k~l~~~~~~~~~~~~~I~~~ 168 (243)
..+.+.+++|+++++|+++.||.+++..|..+|+.|++|+++.||+|+|||||+||++||++++++++.|.+++++|+++
T Consensus 95 ~~~~l~~~~v~v~~iG~~~~l~~~~~~~i~~~e~~t~~~~~~~l~~a~nYGGR~eI~~avr~ia~~v~~g~l~~~~I~e~ 174 (245)
T COG0020 95 ELKKLHKNGVRIRIIGDLSRLPEEVREAIEKAEEKTKNNTGLTLNIAVNYGGRDEIVDAVRKIAEDVAAGKLSPEDIDEE 174 (245)
T ss_pred HHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHCCHH
T ss_conf 88888666749999713021988999998999984457896599985378988999999999999987189896876899
Q ss_pred HHCCCCCCCCCCCCCEEEECCCCEECCCCCCCHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 31011336787765269945785213365640113553886368788889899999999986300505884
Q gi|254780775|r 169 LIAKYLDTSDVPDPDLIIRTGGEKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFGGL 239 (243)
Q Consensus 169 ~i~~~L~~~~~p~pDLlIRTsGe~RLSnFllwq~~ysEl~F~~~lWPdf~~~dl~~~i~~y~~r~RrfG~~ 239 (243)
.|.+||+++++||||||||||||+|||||||||++|||+||+|+|||||+..||.+||.+||+|+||||++
T Consensus 175 ~i~~~L~~~~~pdpDLlIRTsGe~RlSnFllWQ~aYsElyF~d~lWPdf~~~d~~~ai~~yq~R~rrfG~~ 245 (245)
T COG0020 175 LISSHLYTSGLPDPDLLIRTSGEQRLSNFLLWQSAYSELYFTDVLWPDFRREDLLRAIRDYQKRERRFGRV 245 (245)
T ss_pred HHHHHHCCCCCCCCCEEEECCCCCCCCCCHHHHHHHCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99975353579899889967883021254788887264885526689998999999999998461004699
No 6
>KOG1602 consensus
Probab=100.00 E-value=0 Score=567.91 Aligned_cols=238 Identities=38% Similarity=0.657 Sum_probs=228.7
Q ss_pred HHCCCCCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf 52068988269998488518999759987798999999999999999976986899972023365323012488889888
Q gi|254780775|r 4 SMMSSSPPDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIK 83 (243)
Q Consensus 4 ~~~~~~~P~HIaiImDGNrRwAk~~gl~~~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~ 83 (243)
.+..+|+|+||||||||||||||+.|+...+||++|+.++.++++||.++||++||+||||+|||+||++||+.||+|+.
T Consensus 30 ~~~~g~~P~HVaFIMDGNRR~AKk~~L~~~~GH~aGf~~l~~ile~C~~lGI~~vT~fAFSieNFkRs~eEVd~LM~L~~ 109 (271)
T KOG1602 30 LLARGPMPRHVAFIMDGNRRYAKKRGLETSEGHEAGFEALKEILELCKELGIKEVTVFAFSIENFKRSPEEVDGLMDLAL 109 (271)
T ss_pred HHHCCCCCCEEEEEECCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHHHCCCHHHHHHHHHHHH
T ss_conf 98548876417999628557787659985302677899999999999971972799898756640798899999999999
Q ss_pred HHHHHCC---CCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 6310000---1000028326313874451000023589998742025431158972488157899877876436764896
Q gi|254780775|r 84 SFLKKGF---YSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGLNLFIAFNYSSRDEISRAIKNIFQDIESGSV 160 (243)
Q Consensus 84 ~~l~~~~---~~~~~~~iki~~iGd~~~lp~~i~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~k~l~~~~~~~~~ 160 (243)
..+++.. +.+.++|+||+|+||++.||+++++.+.++|+.|++|++.+||||++|+||+||++||+.++..+++|..
T Consensus 110 ~k~~~~~~~~~~~~~~gvririiGdlslL~~~l~k~i~~ieE~Tknn~~~~L~vcf~Ytsr~EI~~a~r~~~~~~~~g~~ 189 (271)
T KOG1602 110 EKIERLLEQGEKLDKYGVRIRVIGDLSLLPESLRKAIKKIEEATKNNTRLILNVCFAYTSRDEILHAVRGIVKRVKDGDI 189 (271)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 99998888766676627079997663328999999999999986337843999994147689999999999975323888
Q ss_pred CHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEECCCCCCCHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 87781155310113367877652699457852133656401135538863687888898999999999863005058846
Q gi|254780775|r 161 CSHDVDSSLIAKYLDTSDVPDPDLIIRTGGEKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFGGLS 240 (243)
Q Consensus 161 ~~~~I~~~~i~~~L~~~~~p~pDLlIRTsGe~RLSnFllwq~~ysEl~F~~~lWPdf~~~dl~~~i~~y~~r~RrfG~~~ 240 (243)
.+ +|++..+.++||++..|+||||||||||+|||||||||+++|+++|.++|||||+..+|.+||.+||.+++++|+-+
T Consensus 190 ~~-~i~~~~~e~~l~~~~~p~pDLlIRTSGe~RLSnFllWQ~s~t~l~f~~~LWPefg~~~l~~aiLkfq~~~~~l~~~~ 268 (271)
T KOG1602 190 DV-DINLSDIEECLYTSDVPHPDLLIRTSGEDRLSNFLLWQTSETELFFADALWPEFGLWHLFWAILKFQRNQSYLGKRK 268 (271)
T ss_pred CC-CHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 72-11167898752247899977799758841478889987505479753003844568999999999999888874443
Q ss_pred CC
Q ss_conf 56
Q gi|254780775|r 241 KK 242 (243)
Q Consensus 241 ~~ 242 (243)
++
T Consensus 269 ~~ 270 (271)
T KOG1602 269 KL 270 (271)
T ss_pred CC
T ss_conf 16
No 7
>KOG2818 consensus
Probab=99.51 E-value=5.9e-14 Score=110.19 Aligned_cols=200 Identities=25% Similarity=0.277 Sum_probs=132.5
Q ss_pred CCCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 89882699984885189997599877989999999999999999769868999720233653230124888898886310
Q gi|254780775|r 8 SSPPDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLK 87 (243)
Q Consensus 8 ~~~P~HIaiImDGNrRwAk~~gl~~~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~ 87 (243)
.+.|+|+|.+- .+..+| .--+....+++.||...||+++++|.-=-- .+|...++ +..+.+.+.
T Consensus 62 ~k~p~hl~lvI-----------~~v~~~-~~~~~da~~~v~w~v~~gik~~~lyd~~g~-~~r~~~~~---~~~I~s~la 125 (263)
T KOG2818 62 KKGPKHLALVI-----------HPVEDG-EGSFSDASSIVFWAVTVGIKYLSLYDRVGI-KKRNMPVV---RDEIISHLA 125 (263)
T ss_pred HHCCHHHEEEE-----------EECCCC-CCEEHHHHHHHHHHHHHCCCEEEHHHHHHH-HCCCCHHH---HHHHHHHHH
T ss_conf 10441214788-----------750357-720020699999999863444427777877-51385899---999997646
Q ss_pred HCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCC--CCCHHHH
Q ss_conf 00010000283263138744510000235899987420254311589724881578998778764367648--9687781
Q gi|254780775|r 88 KGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGLNLFIAFNYSSRDEISRAIKNIFQDIESG--SVCSHDV 165 (243)
Q Consensus 88 ~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~k~l~~~~~~~--~~~~~~I 165 (243)
+-.- +..-.+-+. ..+.++ +. +. ..+..+.+-.-..-+||.-|++-++.+...+... ...+.+|
T Consensus 126 ~~~g-~~~~~~~~~-----~~~snD------~~-nQ-~~~~~L~~~~~s~~DGr~~i~Dl~r~i~~~~~~~~~~~~~~~i 191 (263)
T KOG2818 126 NYFG-LDEPTLAVT-----IKLSND------EP-NQ-EDKCKLGTHAISLEDGRMIIIDLTRLIQELCYLYELYRSETDI 191 (263)
T ss_pred HHCC-CCCCCCCCC-----CCCCCC------CC-CC-CCCCCHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 5357-788763156-----778887------75-65-5350112102102155189999999999878899872797643
Q ss_pred HHHHHCCCCCCCCCCCCCEEEECCCCEECCCCCCCHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 1553101133678776526994578521336564011355388636878888989999999998630050588
Q gi|254780775|r 166 DSSLIAKYLDTSDVPDPDLIIRTGGEKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFGG 238 (243)
Q Consensus 166 ~~~~i~~~L~~~~~p~pDLlIRTsGe~RLSnFllwq~~ysEl~F~~~lWPdf~~~dl~~~i~~y~~r~RrfG~ 238 (243)
+.+.+++-|..-..|+|||+|+.|-..-+++|+|||++.||++-.+.. =.++.++|.++|.+|+.|+.|-|+
T Consensus 192 tve~vds~l~e~~~PePdLll~fg~~~~l~GfpPWhiRltEf~~~p~~-~~~~~e~f~~~lr~ya~ce~RvGk 263 (263)
T KOG2818 192 TVETVDSELKEFVEPEPDLLLFFGPVLVLQGFPPWHIRLTEFTRKPSH-LCTSYETFFRALRKYADCEQRVGK 263 (263)
T ss_pred CHHHHHHHHHHCCCCCCCEEEEECCCHHHCCCCCCEEEEEEEEECCCC-CCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 199999999833799966056663620213789712687776766666-751099999999998545551479
No 8
>pfam01261 AP_endonuc_2 Xylose isomerase-like TIM barrel. This TIM alpha/beta barrel structure is found in xylose isomerase and in endonuclease IV (EC:3.1.21.2). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae.
Probab=85.02 E-value=3.6 Score=22.22 Aligned_cols=78 Identities=13% Similarity=0.095 Sum_probs=44.5
Q ss_pred CHHHHHHCCCCHH-------------HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 5189997599877-------------989999999999999999769868999720233653230124888898886310
Q gi|254780775|r 21 NGRWAAARGLPRC-------------AGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLK 87 (243)
Q Consensus 21 NrRwAk~~gl~~~-------------~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~ 87 (243)
=|++++++|+... .-.++..+.+.+.++.|..+|++.+.+...+.-+...+.+..+.+.+ .+.
T Consensus 31 l~~~~~~~gl~i~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~a~~lG~~~i~~~~g~~~~~~~~~~~~~~~~~----~l~ 106 (201)
T pfam01261 31 LKALLKEYGLEITSLNPSLGLLEPDEREREAALEALKRAIELAAALGAKVVVVHPGGALPGEDREEALDRLAE----SLN 106 (201)
T ss_pred HHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHH----HHH
T ss_conf 9999997099799997786545889899999999999999999973995899826887889999999999999----999
Q ss_pred HCCCCCCCCCCEEEE
Q ss_conf 000100002832631
Q gi|254780775|r 88 KGFYSLKKNNIKVRV 102 (243)
Q Consensus 88 ~~~~~~~~~~iki~~ 102 (243)
+..+.+.++|+.+.+
T Consensus 107 ~~~~~a~~~gi~i~i 121 (201)
T pfam01261 107 ELAELAEEYGVKLAL 121 (201)
T ss_pred HHHHHHHHCCEEEEE
T ss_conf 999988755738999
No 9
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit; InterPro: IPR006396 Glutamate mutase (methylaspartate mutase) catalyses the reversible interconversion of L-glutamate and L-threo-3-methylaspartate, the first step in the pathway of glutamate fermentation . Catalysis is initiated using the cobalamin cofactor. The E subunit is the catalytic subunit (MutE) . ; GO: 0016866 intramolecular transferase activity, 0031419 cobalamin binding, 0019670 anaerobic glutamate catabolic process.
Probab=77.83 E-value=4.6 Score=21.54 Aligned_cols=109 Identities=17% Similarity=0.268 Sum_probs=72.4
Q ss_pred HHHCCCCEEEEEEC--CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEE--ECCCCC--CCCCCCHHHHHHHHHH
Q ss_conf 99769868999720--23365323012488889888631000010000283263--138744--5100002358999874
Q gi|254780775|r 50 AAEVGIKNLTIFAF--SINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVR--VIGNRL--SLDDDILCVLKEAEDQ 123 (243)
Q Consensus 50 ~~~~gI~~lTvyaf--S~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~--~iGd~~--~lp~~i~~~i~~~e~~ 123 (243)
-+..+|+|-.-|.+ |.+||+ ++++..=...++||+|+ .+|=+. +.|+.+-..|.=+|..
T Consensus 173 GIsYNiPY~k~~~Le~sl~~Wq---------------YvDRL~G~YeE~Gv~INREpFgPLTgTLvPP~iS~si~i~E~L 237 (481)
T TIGR01503 173 GISYNIPYAKSVTLEKSLEDWQ---------------YVDRLVGIYEERGVKINREPFGPLTGTLVPPSISNSIQIIEGL 237 (481)
T ss_pred CCCCCCCCCCCCCHHHHHHHCC---------------CEEECCCCEECCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 8210577653223888663124---------------0000113511176047335787664223506789999999999
Q ss_pred HCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEC
Q ss_conf 20254311589724881578998778764367648968778115531011336787765269945
Q gi|254780775|r 124 TRLNTGLNLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHDVDSSLIAKYLDTSDVPDPDLIIRT 188 (243)
Q Consensus 124 T~~n~~~~Lnia~~Yggr~EI~~A~k~l~~~~~~~~~~~~~I~~~~i~~~L~~~~~p~pDLlIRT 188 (243)
=+-..| +=||.++||----|+|=|-.+..- . +...+||.+.... |+-|=|
T Consensus 238 LA~eQG-Vk~itvGygq~Gnl~QDvAal~aL--------~----e~~~eYL~~ygy~--D~~vsT 287 (481)
T TIGR01503 238 LAAEQG-VKNITVGYGQVGNLTQDVAALRAL--------K----ELIQEYLDTYGYK--DVEVST 287 (481)
T ss_pred HHHHCC-CEEEEEEEECCCCHHHHHHHHHHH--------H----HHHHHHHHHCCCC--CEEEEE
T ss_conf 887649-217885011004348899999999--------9----9998640201832--116875
No 10
>cd00008 53EXOc 5'-3' exonuclease; T5 type 5'-3' exonuclease domains may co-occur with DNA polymerase I (Pol I) domains, or be part of Pol I containing complexes. They digest dsDNA and ssDNA, releasing mono-,di- and tri-nucleotides, as well as oligonucleotides, and have also been reported to possess RNase H activity. Also called 5' nuclease family, involved in structure-specific cleavage of flaps formed by Pol I activity (similar to mammalian flap endonuclease I, FEN-1). A single nucleic acid strand may be threaded through the 5' nuclease enzyme before cleavage occurs. The domain binds two divalent metal ions which are necessary for activity.
Probab=75.85 E-value=2.4 Score=23.39 Aligned_cols=71 Identities=18% Similarity=0.257 Sum_probs=41.4
Q ss_pred HHHCCCCCCCEEEEECCCCHHHHHHCCCCHHHHHHHH-----HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHH
Q ss_conf 3520689882699984885189997599877989999-----99999999999976986899972023365323012488
Q gi|254780775|r 3 ASMMSSSPPDHIGIIMDGNGRWAAARGLPRCAGHRKG-----IEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISE 77 (243)
Q Consensus 3 ~~~~~~~~P~HIaiImDGNrRwAk~~gl~~~~Gh~~G-----~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~ 77 (243)
..+...-.|.||+|+.||-+..-+..=.+...++++. ..-+..+.+++..+||+++..- ..|=+.
T Consensus 42 ~~l~~~~~p~~i~v~fD~~~~t~R~~l~p~YKanR~~~p~~l~~q~~~~~~~l~~~gi~~~~~~----------~~EADD 111 (240)
T cd00008 42 LKLIKEYKPTYVAVVFDAGGKTFRHELYPEYKANRKKMPEELREQIPLIKELLEALGIPVLEIE----------GYEADD 111 (240)
T ss_pred HHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEC----------CCCHHH
T ss_conf 9999865998899997289986238772887737899958999999999999997799789746----------843899
Q ss_pred HHHHHH
Q ss_conf 889888
Q gi|254780775|r 78 LVKLIK 83 (243)
Q Consensus 78 L~~l~~ 83 (243)
++.-+.
T Consensus 112 ~ia~la 117 (240)
T cd00008 112 VIGTLA 117 (240)
T ss_pred HHHHHH
T ss_conf 999999
No 11
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=74.64 E-value=7.9 Score=20.05 Aligned_cols=83 Identities=12% Similarity=0.233 Sum_probs=51.2
Q ss_pred EEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99848851899975998779899999999999999997698689997202336532301248888988863100001000
Q gi|254780775|r 15 GIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLK 94 (243)
Q Consensus 15 aiImDGNrRwAk~~gl~~~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~ 94 (243)
++-.++++++. -+-+-..--+++.+.+.+.+..|.++||++|.+-..-.- ..-+.++ -.+.+.+.+.+..+.+.
T Consensus 70 s~~~s~~~~~p--l~s~d~~~r~~~le~l~kaI~lA~~LGi~~I~l~g~dv~-~~~~~~~---~~~rf~e~l~~~~~~Ae 143 (284)
T PRK13210 70 SMCLSAHRRFP--FGSRDEATRERALEIMKKAIRLAQDLGIRTIQLAGYDVY-YEEKDEE---TRQRFIEGLAWAVEQAA 143 (284)
T ss_pred EEECCCCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCC-CCCCCHH---HHHHHHHHHHHHHHHHH
T ss_conf 64155666899--999898999999999999999999809978996887666-6869889---99999999999999999
Q ss_pred CCCCEEEEC
Q ss_conf 028326313
Q gi|254780775|r 95 KNNIKVRVI 103 (243)
Q Consensus 95 ~~~iki~~i 103 (243)
+++|.+-+=
T Consensus 144 ~~gV~L~iE 152 (284)
T PRK13210 144 AAQVMLAVE 152 (284)
T ss_pred HHCCEEEEE
T ss_conf 839989999
No 12
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=72.33 E-value=6.4 Score=20.65 Aligned_cols=57 Identities=21% Similarity=0.350 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCE----------EEECCCCEECCCCC
Q ss_conf 7899877876436764896877811553101133678776526----------99457852133656
Q gi|254780775|r 142 DEISRAIKNIFQDIESGSVCSHDVDSSLIAKYLDTSDVPDPDL----------IIRTGGEKRLSDFL 198 (243)
Q Consensus 142 ~EI~~A~k~l~~~~~~~~~~~~~I~~~~i~~~L~~~~~p~pDL----------lIRTsGe~RLSnFl 198 (243)
.++...++.+.++++.-.....++.++.-...+..|++|++|. +||+.|+.+--+|=
T Consensus 69 ~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~ll~IPNi~~~~VP~G~dE~dNv~I~~~G~~~~f~f~ 135 (422)
T PRK05431 69 EELIAEVKELKEEIKALEAELKELEAELEELLLSIPNLPHDSVPVGKDEDDNVEVRRWGEPREFDFE 135 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCC
T ss_conf 9999999999999999999999999999999984899888657889983022554203774445678
No 13
>pfam11977 RNase_Zc3h12a Zc3h12a-like Ribonuclease domain. This domain is found in the Zc3h12a protein which has shown to be a ribonuclease that controls the stability of a set of inflammatory genes. It has been suggested that this domain belongs to the PIN domain superfamily.
Probab=63.96 E-value=13 Score=18.61 Aligned_cols=67 Identities=22% Similarity=0.207 Sum_probs=45.0
Q ss_pred EEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC--CCCCHHHHHHHHHHHHHHH
Q ss_conf 99848851899975998779899999999999999997698689997202336--5323012488889888631
Q gi|254780775|r 15 GIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINN--WRRPVSEISELVKLIKSFL 86 (243)
Q Consensus 15 aiImDGNrRwAk~~gl~~~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN--~~R~~~Ev~~L~~l~~~~l 86 (243)
.||.||..= |..||.... --++.+...+.|..+.|.+.++||.-+.-. ...+..+-..|++|....+
T Consensus 4 ~IvIDGsNV-A~~hg~~~~----fs~~gI~~av~yf~~rGh~~i~vf~p~~r~~~~~~~~~~~~~L~~L~~~~~ 72 (155)
T pfam11977 4 PIVIDGSNV-AMSHGNKEF----FSCRGLLLAVDYFRKRGHEVITVFVPNWRYKARDGKVTDQHELERLIRLGL 72 (155)
T ss_pred EEEECCHHH-HHHCCCCCC----CCHHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCCCCCCHHHHHHHHHCCC
T ss_conf 189876488-887399984----508999999999998599459998937873177788877999999997897
No 14
>KOG0207 consensus
Probab=63.48 E-value=7.9 Score=20.05 Aligned_cols=85 Identities=18% Similarity=0.284 Sum_probs=46.3
Q ss_pred ECCCCHHHHHHCCCCHHHH-------HHHHHH-----------------------HHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 8488518999759987798-------999999-----------------------9999999999769868999720233
Q gi|254780775|r 17 IMDGNGRWAAARGLPRCAG-------HRKGIE-----------------------VFNEIVAAAAEVGIKNLTIFAFSIN 66 (243)
Q Consensus 17 ImDGNrRwAk~~gl~~~~G-------h~~G~~-----------------------~l~~ii~~~~~~gI~~lTvyafS~e 66 (243)
|+=||+||...+|.+..+- |.+|.. -....+.....+|| .++.++=|
T Consensus 672 i~iGN~~~~~r~~~~~~~~i~~~~~~~e~~g~tvv~v~vn~~l~gv~~l~D~vr~~a~~av~~Lk~~Gi---~v~mLTGD 748 (951)
T KOG0207 672 VLIGNKEWMSRNGCSIPDDILDALTESERKGQTVVYVAVNGQLVGVFALEDQVRPDAALAVAELKSMGI---KVVMLTGD 748 (951)
T ss_pred EEECHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEEEECCEEEEEEEECCCCCHHHHHHHHHHHHCCC---EEEEECCC
T ss_conf 863269999866998760577765567526846999998788999998344455327999999996583---38998478
Q ss_pred CCC--CC-HHHHHHHHHHHHHHHH----HCCCCCCCCCCEEEECCC
Q ss_conf 653--23-0124888898886310----000100002832631387
Q gi|254780775|r 67 NWR--RP-VSEISELVKLIKSFLK----KGFYSLKKNNIKVRVIGN 105 (243)
Q Consensus 67 N~~--R~-~~Ev~~L~~l~~~~l~----~~~~~~~~~~iki~~iGd 105 (243)
|++ |+ .++|. +-+..-+.+- +.+.++.+++-++-++||
T Consensus 749 n~~aA~svA~~VG-i~~V~aev~P~~K~~~Ik~lq~~~~~VaMVGD 793 (951)
T KOG0207 749 NDAAARSVAQQVG-IDNVYAEVLPEQKAEKIKEIQKNGGPVAMVGD 793 (951)
T ss_pred CHHHHHHHHHHHC-CCEEEECCCCHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 7899999998628-10477435833368999999854883799707
No 15
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=63.27 E-value=14 Score=18.53 Aligned_cols=108 Identities=17% Similarity=0.224 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC-CHHHHHHH--HHHHHHHHHHCCCCCCCCCCEEEEC-CCCCCC---
Q ss_conf 9999999999999997698689997202336532-30124888--8988863100001000028326313-874451---
Q gi|254780775|r 37 RKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRR-PVSEISEL--VKLIKSFLKKGFYSLKKNNIKVRVI-GNRLSL--- 109 (243)
Q Consensus 37 ~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R-~~~Ev~~L--~~l~~~~l~~~~~~~~~~~iki~~i-Gd~~~l--- 109 (243)
...+..+.++++||.+.||+ +|=+|++=+-- +..|+..+ ..-+...|.+--..++++|+|+.+= |-..-|
T Consensus 45 ~~Nl~~l~~il~~n~~~~I~---~fRlSS~l~P~~shp~~~~~~~~~~i~~~l~~iG~~ak~~~iRls~HPgqf~vL~S~ 121 (316)
T PRK02308 45 LSNLEDLLRILEYNIAHGIR---LYRLSSSLIPLASHPELVEWDYIEAFKEELRKIGALIKEHNMRLSFHPDQFVVLNSP 121 (316)
T ss_pred HHHHHHHHHHHHHHHHCCCE---EEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEECCCCCEECCCC
T ss_conf 99999999999999975970---899256636677773324585299999999999999998294586279762326899
Q ss_pred -CCCCHHHHHHHHHHHC--------CCCCCEEEEEECCCHHHHHHHH
Q ss_conf -0000235899987420--------2543115897248815789987
Q gi|254780775|r 110 -DDDILCVLKEAEDQTR--------LNTGLNLFIAFNYSSRDEISRA 147 (243)
Q Consensus 110 -p~~i~~~i~~~e~~T~--------~n~~~~Lnia~~Yggr~EI~~A 147 (243)
|+-+...|.+.+--.. ....+++.+--.||++++.++-
T Consensus 122 ~~~Vv~~si~dL~~Ha~~ld~mGl~~~~~i~IHigg~ygdk~~a~~r 168 (316)
T PRK02308 122 KPEVVENSIKDLEYHARLLDLMGIEDSSKINIHVGGAYGDKEKALER 168 (316)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHH
T ss_conf 88999999999999999999847998862899814766987899999
No 16
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=59.74 E-value=11 Score=19.17 Aligned_cols=11 Identities=36% Similarity=0.643 Sum_probs=5.5
Q ss_pred CCCEEEECCCC
Q ss_conf 28326313874
Q gi|254780775|r 96 NNIKVRVIGNR 106 (243)
Q Consensus 96 ~~iki~~iGd~ 106 (243)
.++-++..|..
T Consensus 121 ~n~~vr~~g~~ 131 (429)
T COG0172 121 DNVEVRRWGEP 131 (429)
T ss_pred CCEEEEEEECC
T ss_conf 65488997337
No 17
>COG4865 Glutamate mutase epsilon subunit [Amino acid transport and metabolism]
Probab=59.67 E-value=11 Score=19.04 Aligned_cols=83 Identities=17% Similarity=0.290 Sum_probs=49.7
Q ss_pred CCCCEEEEEEC--CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEE--ECCCCC--CCCCCCHHHHHHHHHHHCC
Q ss_conf 69868999720--23365323012488889888631000010000283263--138744--5100002358999874202
Q gi|254780775|r 53 VGIKNLTIFAF--SINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVR--VIGNRL--SLDDDILCVLKEAEDQTRL 126 (243)
Q Consensus 53 ~gI~~lTvyaf--S~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~--~iGd~~--~lp~~i~~~i~~~e~~T~~ 126 (243)
.+|++-+.|.+ |.|||+- |+-||.+ ..++||+|+ .+|-+. ..|+.+-..|.-+|-.-+-
T Consensus 177 yNiPy~k~~~Le~siE~WqY----VDRL~G~-----------YeE~Gi~INREpFgPLTgTLVPP~Is~sI~iiEgLLA~ 241 (485)
T COG4865 177 YNIPYAKRVTLEKSIEDWQY----VDRLMGM-----------YEEHGIRINREPFGPLTGTLVPPFISHSIAIIEGLLAL 241 (485)
T ss_pred ECCCCCCCCCHHHHHHHHHH----HHHHHHH-----------HHHCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 14755300207666888899----9998756-----------77427154365478876550686888799999999999
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHH
Q ss_conf 5431158972488157899877876
Q gi|254780775|r 127 NTGLNLFIAFNYSSRDEISRAIKNI 151 (243)
Q Consensus 127 n~~~~Lnia~~Yggr~EI~~A~k~l 151 (243)
..+ +-+|.++||--.-|++-+..+
T Consensus 242 eQG-VksitiGygQvGNltQDvAa~ 265 (485)
T COG4865 242 EQG-VKSITVGYGQVGNLTQDVAAI 265 (485)
T ss_pred HHC-CCEEEECCHHHCCHHHHHHHH
T ss_conf 837-622775101104278899999
No 18
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=57.71 E-value=17 Score=17.92 Aligned_cols=92 Identities=11% Similarity=0.089 Sum_probs=45.0
Q ss_pred CCEEEEEECCCHHH-HHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEECCCCCCCHHCCCEE
Q ss_conf 31158972488157-89987787643676489687781155310113367877652699457852133656401135538
Q gi|254780775|r 129 GLNLFIAFNYSSRD-EISRAIKNIFQDIESGSVCSHDVDSSLIAKYLDTSDVPDPDLIIRTGGEKRLSDFLLWQVAYSEF 207 (243)
Q Consensus 129 ~~~Lnia~~Yggr~-EI~~A~k~l~~~~~~~~~~~~~I~~~~i~~~L~~~~~p~pDLlIRTsGe~RLSnFllwq~~ysEl 207 (243)
.-.+-|+++|+|+. |++++++...+ .-...+ .|..+-.++-..-.|..+-|+.+......-..-+..+.+
T Consensus 179 ~~Dv~I~iS~sG~t~~~~~~~~~Ak~-~Ga~iI--------aIT~~~~spLa~~aD~~L~~~~~e~~~~~~~~~s~~a~l 249 (282)
T PRK11557 179 PDDLLLAISYSGERRELNLAADEALR-VGGKVL--------AITGFTPNALQQRASHCLYTIAEEQATRSAAISSTHAQG 249 (282)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHH-CCCEEE--------EECCCCCCCHHHHCCEEEEECCCCCCCCCCCHHHHHHHH
T ss_conf 99989998599997899999999998-799399--------972989981588699999847853101343439999999
Q ss_pred EECCCCCCCCCHHHHHHHHHHH
Q ss_conf 8636878888989999999998
Q gi|254780775|r 208 VFIPEYWPDFSRELFFHALNQY 229 (243)
Q Consensus 208 ~F~~~lWPdf~~~dl~~~i~~y 229 (243)
|-+|.|.--+-..|+..+....
T Consensus 250 ~iiD~L~~~~~~~~~e~~~e~l 271 (282)
T PRK11557 250 MLTDLLFMALIQQDLELAPERI 271 (282)
T ss_pred HHHHHHHHHHHHHCHHHHHHHH
T ss_conf 9999999999997889999999
No 19
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase; InterPro: IPR004549 This family represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase (6.4.1.2 from EC) is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase (6.3.4.14 from EC), and two subunits of carboxyl transferase in a 2:2 complex. In the first step of long-chain fatty acid synthesis, biotin carboxylase catalyses the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-coA. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase). In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.; GO: 0016874 ligase activity.
Probab=55.14 E-value=13 Score=18.69 Aligned_cols=21 Identities=29% Similarity=0.596 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHCCCCEEEEE
Q ss_conf 999999999997698689997
Q gi|254780775|r 41 EVFNEIVAAAAEVGIKNLTIF 61 (243)
Q Consensus 41 ~~l~~ii~~~~~~gI~~lTvy 61 (243)
|.-.+|++.|.++||++|-||
T Consensus 12 EIA~RIiRAC~ElGi~TVAVy 32 (451)
T TIGR00514 12 EIALRIIRACKELGIATVAVY 32 (451)
T ss_pred HHHHHHHHHHHHCCCCEEEEC
T ss_conf 678899998886498639860
No 20
>smart00475 53EXOc 5'-3' exonuclease.
Probab=53.38 E-value=9.4 Score=19.58 Aligned_cols=71 Identities=15% Similarity=0.303 Sum_probs=39.1
Q ss_pred HHHCCCCCCCEEEEECCCCH-HHHHHCCCCHHHHHHHH-----HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHH
Q ss_conf 35206898826999848851-89997599877989999-----9999999999997698689997202336532301248
Q gi|254780775|r 3 ASMMSSSPPDHIGIIMDGNG-RWAAARGLPRCAGHRKG-----IEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEIS 76 (243)
Q Consensus 3 ~~~~~~~~P~HIaiImDGNr-RwAk~~gl~~~~Gh~~G-----~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~ 76 (243)
..+...-.|.||+|+.||-+ .| +..=.|...+++.. ...+..+.+++..+||+.+..- .-|=+
T Consensus 41 ~~l~~~~~p~~i~v~fD~~~~~~-R~~i~p~YKanR~~~p~~l~~q~~~i~~~l~~~gi~~~~~~----------g~EAD 109 (259)
T smart00475 41 LKLIKEEKPTYVAVVFDAKGKTF-RHELYPEYKANRPKTPDELLEQIPLIKELLDALGIPVLEVE----------GYEAD 109 (259)
T ss_pred HHHHHHCCCCEEEEEEECCCCCC-HHHHCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECC----------CCCHH
T ss_conf 99998769977999981899865-14445555328999978999999999999997699876238----------85479
Q ss_pred HHHHHHHH
Q ss_conf 88898886
Q gi|254780775|r 77 ELVKLIKS 84 (243)
Q Consensus 77 ~L~~l~~~ 84 (243)
.++.-+..
T Consensus 110 DvIatla~ 117 (259)
T smart00475 110 DVIATLAK 117 (259)
T ss_pred HHHHHHHH
T ss_conf 99999999
No 21
>PRK07625 consensus
Probab=51.47 E-value=22 Score=17.28 Aligned_cols=21 Identities=14% Similarity=0.308 Sum_probs=13.6
Q ss_pred HHHHCCCCCCCEEEEECCCCH
Q ss_conf 135206898826999848851
Q gi|254780775|r 2 VASMMSSSPPDHIGIIMDGNG 22 (243)
Q Consensus 2 ~~~~~~~~~P~HIaiImDGNr 22 (243)
+-.+.....|.|+||..|.-+
T Consensus 45 L~kli~e~~P~~iavaFD~~~ 65 (922)
T PRK07625 45 LRRMRKDVSAEYSACVFDAKG 65 (922)
T ss_pred HHHHHHHCCCCEEEEEECCCC
T ss_conf 999998659988999971989
No 22
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase; InterPro: IPR004559 Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins called HemN (IPR004558 from INTERPRO). This family contains a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including Escherichia coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the Escherichia coli hemN family. The member of this family from Bacillus subtilis was shown to complement a hemF/hemN double mutant of Salmonella typhimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize haem de novo. ; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin biosynthetic process, 0005737 cytoplasm.
Probab=50.18 E-value=15 Score=18.34 Aligned_cols=29 Identities=21% Similarity=0.403 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 99999999999997698689997202336
Q gi|254780775|r 39 GIEVFNEIVAAAAEVGIKNLTIFAFSINN 67 (243)
Q Consensus 39 G~~~l~~ii~~~~~~gI~~lTvyafS~eN 67 (243)
-.+.+.+=++.++++.++++|+|++|.|-
T Consensus 171 tl~~l~~~l~~A~eL~~~H~S~Y~L~vEp 199 (371)
T TIGR00539 171 TLEELKEELKLALELDAEHLSVYALIVEP 199 (371)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEEECC
T ss_conf 48999999865531784511233234223
No 23
>KOG0013 consensus
Probab=48.29 E-value=14 Score=18.45 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=17.3
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 897248815789987787643676489
Q gi|254780775|r 133 FIAFNYSSRDEISRAIKNIFQDIESGS 159 (243)
Q Consensus 133 nia~~Yggr~EI~~A~k~l~~~~~~~~ 159 (243)
--|-+||||.||-+|.++.+.....+.
T Consensus 53 dTapAf~GrKEIWDaL~aa~ta~e~~d 79 (231)
T KOG0013 53 DTAPAFGGRKEIWDALHAAVTAAEEGD 79 (231)
T ss_pred HCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 505433780899999999999986266
No 24
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=47.47 E-value=20 Score=17.46 Aligned_cols=103 Identities=17% Similarity=0.355 Sum_probs=54.8
Q ss_pred CCCEEEECCCC-CCCCCCCHHHHHHHHHHHCCCCCCEEEEEEC--CCHHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHC
Q ss_conf 28326313874-4510000235899987420254311589724--881578998778764367648968-7781155310
Q gi|254780775|r 96 NNIKVRVIGNR-LSLDDDILCVLKEAEDQTRLNTGLNLFIAFN--YSSRDEISRAIKNIFQDIESGSVC-SHDVDSSLIA 171 (243)
Q Consensus 96 ~~iki~~iGd~-~~lp~~i~~~i~~~e~~T~~n~~~~Lnia~~--Yggr~EI~~A~k~l~~~~~~~~~~-~~~I~~~~i~ 171 (243)
.++++-++||. ...+...... .++ =++.+.+|-+ |.-.+++++-+++..++.- +.+. .++++
T Consensus 155 ~gl~ia~vGD~~nnv~~S~~~~------~~~--lG~~v~i~~P~~~~p~~~~~~~~~~~~~~~g-~~i~~~~d~~----- 220 (334)
T PRK01713 155 SEISYVYIGDARNNMGNSLLLI------GAK--LGMDVRICAPKALLPEDSLVEMCEKFAKESG-ARITVTDDID----- 220 (334)
T ss_pred CCEEEEEECCCCCCHHHHHHHH------HHH--CCCEEEEECCCCCCCCHHHHHHHHHHHHHCC-CEEEEEECHH-----
T ss_conf 6749999389754188999999------997--7997999889765878899999999999719-9089960788-----
Q ss_pred CCCCCCCCCCCCEEEE-----CC-----CCEECCCCCCCHHC--------CCEEEECCCCCCCCC
Q ss_conf 1133678776526994-----57-----85213365640113--------553886368788889
Q gi|254780775|r 172 KYLDTSDVPDPDLIIR-----TG-----GEKRLSDFLLWQVA--------YSEFVFIPEYWPDFS 218 (243)
Q Consensus 172 ~~L~~~~~p~pDLlIR-----Ts-----Ge~RLSnFllwq~~--------ysEl~F~~~lWPdf~ 218 (243)
..+++.|++-- .| -+.|+..|++||+. -....|.-+| |.+.
T Consensus 221 -----~a~~~aDvvytd~w~smg~~~~~~~er~~~~~~y~v~~elm~~~~~~~~~fmHcL-Pa~~ 279 (334)
T PRK01713 221 -----TAVKGVDFVHTDVWVSMGEPLETWGERIDLLMPYQVTPELMKRTGNPKVKFMHCL-PAFH 279 (334)
T ss_pred -----HHHCCCCEEEEEEEEECCCHHHHHHHHHHHHCCCEEHHHHHHHCCCCCCEEECCC-CCCC
T ss_conf -----8856786898766763664577788998775178362999975289992996888-6665
No 25
>pfam10980 DUF2787 Protein of unknown function (DUF2787). This bacterial family of proteins has no known function.
Probab=46.32 E-value=16 Score=18.18 Aligned_cols=36 Identities=19% Similarity=0.623 Sum_probs=24.8
Q ss_pred CCCCCCCCE-EEECCCCEECCCCCCCHHCC-CEEEECCCCCCCCC
Q ss_conf 678776526-99457852133656401135-53886368788889
Q gi|254780775|r 176 TSDVPDPDL-IIRTGGEKRLSDFLLWQVAY-SEFVFIPEYWPDFS 218 (243)
Q Consensus 176 ~~~~p~pDL-lIRTsGe~RLSnFllwq~~y-sEl~F~~~lWPdf~ 218 (243)
.++..|+.+ |.|++++ .||+.| |.+-++...+|++.
T Consensus 37 ~gG~HPVEI~l~r~~~~-------~W~i~yiTdFsY~G~~~peL~ 74 (128)
T pfam10980 37 RGGFHPVEIRLERENSE-------QWQIVYITDFSYVGGPYPELE 74 (128)
T ss_pred CCCCCCEEEEEEECCCC-------CEEEEEEEEECCCCCCCCCEE
T ss_conf 69937789999984899-------799999985521499986254
No 26
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component; InterPro: IPR010199 This entry describes an NADPH-dependent sulphite reductase flavoprotein subunit. Most members of the proteins of this entry are found in Cys biosynthesis gene clusters. The closest homologues are designated as subunits nitrate reductase.; GO: 0004783 sulfite reductase (NADPH) activity, 0000103 sulfate assimilation, 0019344 cysteine biosynthetic process.
Probab=45.60 E-value=20 Score=17.43 Aligned_cols=28 Identities=14% Similarity=0.248 Sum_probs=13.0
Q ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf 2832631387445100002358999874
Q gi|254780775|r 96 NNIKVRVIGNRLSLDDDILCVLKEAEDQ 123 (243)
Q Consensus 96 ~~iki~~iGd~~~lp~~i~~~i~~~e~~ 123 (243)
+|..|-|+||=..+-+|+.+.+-++...
T Consensus 574 ~GA~iYVCGDA~~MAKDVh~aLL~vi~~ 601 (628)
T TIGR01931 574 EGAHIYVCGDAKKMAKDVHQALLDVIAK 601 (628)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHHH
T ss_conf 8974898268201034799999999996
No 27
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=44.35 E-value=28 Score=16.58 Aligned_cols=19 Identities=21% Similarity=0.289 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHCCCCEE
Q ss_conf 9999999999997698689
Q gi|254780775|r 40 IEVFNEIVAAAAEVGIKNL 58 (243)
Q Consensus 40 ~~~l~~ii~~~~~~gI~~l 58 (243)
.++++.+.+...+.|++.+
T Consensus 16 ~e~~~~~~~~~~~~g~~~v 34 (264)
T PRK03501 16 VEKVKPLKKIAEENGFTVV 34 (264)
T ss_pred HHHHHHHHHHHHHCCCEEE
T ss_conf 9999999999998798884
No 28
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=44.25 E-value=28 Score=16.57 Aligned_cols=52 Identities=15% Similarity=0.382 Sum_probs=41.0
Q ss_pred HCCCCCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 206898826999848851899975998779899999999999999997698689997
Q gi|254780775|r 5 MMSSSPPDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIF 61 (243)
Q Consensus 5 ~~~~~~P~HIaiImDGNrRwAk~~gl~~~~Gh~~G~~~l~~ii~~~~~~gI~~lTvy 61 (243)
+...-.|.-|-++||.-.-+-.+.|+.... ..+.|.+++.-+.+.||+ +|+|
T Consensus 78 ia~~~kP~~vtLVPe~r~elTTegGld~~~----~~~~L~~~i~~lk~~~Ir-vSLF 129 (234)
T cd00003 78 IALEVKPHQVTLVPEKREELTTEGGLDVAG----QAEKLKPIIERLKDAGIR-VSLF 129 (234)
T ss_pred HHHHCCCCEEEECCCCCCCCCCCCCCCCCC----HHHHHHHHHHHHHHCCCE-EEEE
T ss_conf 999849987898788878641788926654----788999999999865982-7997
No 29
>pfam04858 TH1 TH1 protein. TH1 is a highly conserved but uncharacterized metazoan protein. No homologue has been identified in Caenorhabditis elegans. TH1 binds specifically to A-Raf kinase.
Probab=44.07 E-value=9.6 Score=19.52 Aligned_cols=55 Identities=24% Similarity=0.280 Sum_probs=35.4
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEC
Q ss_conf 311589724881578998778764367648968778115531011336787765269945
Q gi|254780775|r 129 GLNLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHDVDSSLIAKYLDTSDVPDPDLIIRT 188 (243)
Q Consensus 129 ~~~Lnia~~Yggr~EI~~A~k~l~~~~~~~~~~~~~I~~~~i~~~L~~~~~p~pDLlIRT 188 (243)
.-...+|++..... .+|+..+..-...+.++|.||+.-. .+|++.-|||.-+||.
T Consensus 270 ~t~i~laL~~~~~y--p~a~~al~smLs~~~lnp~Di~~L~---~~Yss~dpPpv~liR~ 324 (582)
T pfam04858 270 ATVITLALATSAVD--PQACYALADMLSRGALNPADITVLL---RMYTSSDPPPVDLIRH 324 (582)
T ss_pred CHHHHHHHHCCCCC--CHHHHHHHHHHCCCCCCHHHHHHHH---HHHCCCCCCCHHHHCC
T ss_conf 21789997236457--5699999998642899867799999---9706899896024238
No 30
>TIGR00417 speE spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (), spermine synthase () and putrescine N-methyltransferase () . The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain . The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) . ; GO: 0003824 catalytic activity.
Probab=43.61 E-value=14 Score=18.48 Aligned_cols=66 Identities=20% Similarity=0.452 Sum_probs=41.8
Q ss_pred HHCCCCCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHH-HHHHHH
Q ss_conf 5206898826999848851899975998779899999999999999997698689997202336532301248-888988
Q gi|254780775|r 4 SMMSSSPPDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEIS-ELVKLI 82 (243)
Q Consensus 4 ~~~~~~~P~HIaiImDGNrRwAk~~gl~~~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~-~L~~l~ 82 (243)
.|.+++.||||+||==|= -| .|+|++ +.-.|+.+|+- ||+ ....+.
T Consensus 69 pL~~H~NPk~VLvIGGGD------GG------------~lREV~---KH~sVE~~~lV------------dID~~VI~~s 115 (284)
T TIGR00417 69 PLFAHPNPKKVLVIGGGD------GG------------VLREVV---KHKSVEKATLV------------DIDEKVIELS 115 (284)
T ss_pred HHHCCCCCCEEEEEECCC------CC------------EEEEEE---ECCCCCEEEEE------------ECCHHHHHHH
T ss_conf 653689885478996388------84------------687887---55981679999------------7274789998
Q ss_pred HHHHHHCC-CCCCCCCCEEEE
Q ss_conf 86310000-100002832631
Q gi|254780775|r 83 KSFLKKGF-YSLKKNNIKVRV 102 (243)
Q Consensus 83 ~~~l~~~~-~~~~~~~iki~~ 102 (243)
+++|...- -.+.+.++++.+
T Consensus 116 rkyLP~~~~g~~dderv~~~i 136 (284)
T TIGR00417 116 RKYLPKLAAGSFDDERVDLAI 136 (284)
T ss_pred HHHCHHHHCCCCCCCEEEEEE
T ss_conf 882612105665888035898
No 31
>KOG1620 consensus
Probab=42.73 E-value=26 Score=16.75 Aligned_cols=107 Identities=19% Similarity=0.198 Sum_probs=60.4
Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHCCCCC-CEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 1387445100002358999874202543-115897248815789987787643676489687781155310113367877
Q gi|254780775|r 102 VIGNRLSLDDDILCVLKEAEDQTRLNTG-LNLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHDVDSSLIAKYLDTSDVP 180 (243)
Q Consensus 102 ~iGd~~~lp~~i~~~i~~~e~~T~~n~~-~~Lnia~~Yggr~EI~~A~k~l~~~~~~~~~~~~~I~~~~i~~~L~~~~~p 180 (243)
+.|.....+.......-.+|+.|....+ -+|.|=++=--..+.+..-| + .....+..+|..
T Consensus 72 ~~~~~~~~~~~~~~~fl~LEdlt~~~~~PcVLDlKmGtrq~~~dAS~eK---------------~-~~q~~Kc~~tTs-- 133 (284)
T KOG1620 72 LTGIYELVKDRVSAKFLLLEDLTSGYEKPCVLDLKMGTRQHGDDASEEK---------------R-ARQLAKCTQTTS-- 133 (284)
T ss_pred HCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCEECCCCCCHHH---------------H-HHHHHHHHCCCC--
T ss_conf 0345223666200111416888873568625786325354066558889---------------9-999877413564--
Q ss_pred CCCEEEECCCCEECCCCCCCHHCCCEEEECCCCCC-CCCHHHHHHHHHHHHHCC
Q ss_conf 65269945785213365640113553886368788-889899999999986300
Q gi|254780775|r 181 DPDLIIRTGGEKRLSDFLLWQVAYSEFVFIPEYWP-DFSRELFFHALNQYNLRD 233 (243)
Q Consensus 181 ~pDLlIRTsGe~RLSnFllwq~~ysEl~F~~~lWP-df~~~dl~~~i~~y~~r~ 233 (243)
++.| -||+++-.|+..-....|.+++|. ..+..++..|+..|-.+.
T Consensus 134 ------~~LG-~Ri~GmqV~~~~~~~~~~~~k~~gr~~~~~g~~~al~~f~~~~ 180 (284)
T KOG1620 134 ------ASLG-VRICGMQVYEAENNSYVFRSKYYGRSLSVEGFRLALMRFFHNG 180 (284)
T ss_pred ------EEEC-EEEECCEEEECCCCEEEECCHHCCCCCCHHHHHHHHHHHHHCC
T ss_conf ------2315-2874408774367469952202062024465999999998452
No 32
>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase; InterPro: IPR011963 Siderophores are low molecular weight iron-chelating compounds synthesised by many bacteria to aid in the aquisition of this vital trace element . Proteins in this entry are adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores. These proteins belong to the AMP-binding family and are mostly thought to activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. One of these proteins, however, is believed to differ in function, activating salicylate rather than DHB. The crystal structure of 2,3-dihydroxybenzoate-AMP ligase (P40871 from SWISSPROT) from Bacillus subtilis has been examined . This protein is composed of a large N-terminal domain (~420 aa) and a more compact C-terminal domain (~110 aa), with an overall "hammer-and-anvil" fold similar to that of firefly luciferase . The active site is located in a deep compartment located at the interface of the domains, with a p-loop thought to be involved in catalysis located at the entrance to the cavity. Relatively little conformational change was observed during catalysis.; GO: 0008668 (23-dihydroxybenzoyl)adenylate synthase activity, 0019290 siderophore biosynthetic process.
Probab=42.45 E-value=12 Score=18.99 Aligned_cols=70 Identities=19% Similarity=0.134 Sum_probs=34.3
Q ss_pred HHHHHHHCCCCCCEEEEEEC-C-CHHHHHHHHHHHHHHH--HHCC-CCCHHHHHHHHHCCCCCCCCCCCCCEEEECCCC
Q ss_conf 99987420254311589724-8-8157899877876436--7648-968778115531011336787765269945785
Q gi|254780775|r 118 KEAEDQTRLNTGLNLFIAFN-Y-SSRDEISRAIKNIFQD--IESG-SVCSHDVDSSLIAKYLDTSDVPDPDLIIRTGGE 191 (243)
Q Consensus 118 ~~~e~~T~~n~~~~Lnia~~-Y-ggr~EI~~A~k~l~~~--~~~~-~~~~~~I~~~~i~~~L~~~~~p~pDLlIRTsGe 191 (243)
+-+++..++...+.+.|..+ - ....+--..+.....+ +.-. ...+++|. |- +|.=+...-|-||=||=-.
T Consensus 137 ~fa~~l~~~~p~l~~~~v~G~~~~~~~~~~~~l~~~~~~Pa~~~~a~~~~~eVA---FF-QLSGGsTGtPKLIPRTHnD 211 (534)
T TIGR02275 137 AFARQLKAKLPTLRNVIVAGRKIRVEDELFLWLESPAEEPAVKFEAPTKSDEVA---FF-QLSGGSTGTPKLIPRTHND 211 (534)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCEE---EE-ECCCCCCCCCCCCCCCCCC
T ss_conf 899999974796138885065137557101244242546576433588976478---88-7377745888778887543
No 33
>pfam02739 5_3_exonuc_N 5'-3' exonuclease, N-terminal resolvase-like domain.
Probab=41.31 E-value=20 Score=17.56 Aligned_cols=40 Identities=15% Similarity=0.186 Sum_probs=17.2
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHH
Q ss_conf 44510000235899987420254311589724881578998
Q gi|254780775|r 106 RLSLDDDILCVLKEAEDQTRLNTGLNLFIAFNYSSRDEISR 146 (243)
Q Consensus 106 ~~~lp~~i~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~ 146 (243)
|+..|+++...+..+.+....- ++...-.-+|-.=+=|..
T Consensus 77 R~~~p~~l~~Q~~~i~~~l~~~-gi~~~~~~g~EADDvIat 116 (169)
T pfam02739 77 RAKTPDELPPQIPLIKELLDAL-GIPVLEVPGYEADDVIGT 116 (169)
T ss_pred CCCCCHHHHHHHHHHHHHHHHC-EEEEEEECCCCHHHHHHH
T ss_conf 9999378999999999998750-144785248531567999
No 34
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=40.22 E-value=21 Score=17.30 Aligned_cols=91 Identities=19% Similarity=0.269 Sum_probs=49.4
Q ss_pred CCCEEEECCCC-CCCCCCCHHHHHHHHHHHCCCCCCEEEEEEC--CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC
Q ss_conf 28326313874-4510000235899987420254311589724--88157899877876436764896877811553101
Q gi|254780775|r 96 NNIKVRVIGNR-LSLDDDILCVLKEAEDQTRLNTGLNLFIAFN--YSSRDEISRAIKNIFQDIESGSVCSHDVDSSLIAK 172 (243)
Q Consensus 96 ~~iki~~iGd~-~~lp~~i~~~i~~~e~~T~~n~~~~Lnia~~--Yggr~EI~~A~k~l~~~~~~~~~~~~~I~~~~i~~ 172 (243)
.|.+|.++||. +..+........ .=++.+.+|-+ |.-.+++++-++++.++.-....-.+|+ .
T Consensus 154 ~gl~i~~vGD~~nnVa~S~~~~~~--------~lG~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~i~~~~d~-----~- 219 (331)
T PRK02102 154 KGLKLAYLGDGRNNMANSLLVGGA--------KLGMDVRICAPKSLWPEEELVAQAKEIAKETGAKITITEDV-----E- 219 (331)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH--------HCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCEEEEEECH-----H-
T ss_conf 677389978876424668999998--------55985999758644889799999999999829938999566-----6-
Q ss_pred CCCCCCCCCCCEEE-----EC----CCCEECCCCCCCHHCC
Q ss_conf 13367877652699-----45----7852133656401135
Q gi|254780775|r 173 YLDTSDVPDPDLII-----RT----GGEKRLSDFLLWQVAY 204 (243)
Q Consensus 173 ~L~~~~~p~pDLlI-----RT----sGe~RLSnFllwq~~y 204 (243)
..+++.|+|. .. .-+.|+..|..||+..
T Consensus 220 ----ea~~~aDVvytdvw~sm~~~~~~~~r~~~~~~y~v~~ 256 (331)
T PRK02102 220 ----EAVKGADVIYTDVWVSMGEEEKWEERIKLLKPYQVNM 256 (331)
T ss_pred ----HHHCCCCEEEEEHHHCCCHHHHHHHHHHHHCCCEECH
T ss_conf ----6633576565303322334777999998740763789
No 35
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457; InterPro: IPR006354 These sequences are all members of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences are all from the Gram-positive (low-GC) bacteria..
Probab=38.84 E-value=21 Score=17.40 Aligned_cols=64 Identities=27% Similarity=0.319 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHC---CCCEEEEEECCCCCCCCCHHHHHHHHHH-HH----------HHH--HHCCCCCCCCCCEE
Q ss_conf 99999999999999976---9868999720233653230124888898-88----------631--00001000028326
Q gi|254780775|r 37 RKGIEVFNEIVAAAAEV---GIKNLTIFAFSINNWRRPVSEISELVKL-IK----------SFL--KKGFYSLKKNNIKV 100 (243)
Q Consensus 37 ~~G~~~l~~ii~~~~~~---gI~~lTvyafS~eN~~R~~~Ev~~L~~l-~~----------~~l--~~~~~~~~~~~iki 100 (243)
.+|.+++.+-+.+.+++ +|+ |.|=|.|-.|+|+.|..++.- |. ..+ -+.+. -.+...++
T Consensus 13 Y~G~e~I~ea~~FV~~L~kr~~p----YLFVTNNstrtPe~Va~~L~snfdipat~e~VfT~smAta~y~~-~~k~~~~v 87 (251)
T TIGR01457 13 YKGKEKIEEAVEFVKELKKRDVP----YLFVTNNSTRTPESVAELLASNFDIPATKEQVFTASMATADYLA-DLKKEKSV 87 (251)
T ss_pred ECCCCCHHHHHHHHHHHHHCCCC----EEEEECCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH-HCCCCEEE
T ss_conf 35853016789999988647986----36872788888179999987516899972102344789999998-32880289
Q ss_pred EECCC
Q ss_conf 31387
Q gi|254780775|r 101 RVIGN 105 (243)
Q Consensus 101 ~~iGd 105 (243)
-+||.
T Consensus 88 yViGE 92 (251)
T TIGR01457 88 YVIGE 92 (251)
T ss_pred EEECC
T ss_conf 99823
No 36
>PRK07997 consensus
Probab=38.84 E-value=34 Score=16.04 Aligned_cols=20 Identities=20% Similarity=0.536 Sum_probs=12.3
Q ss_pred HHHHCCCCCCCEEEEECCCC
Q ss_conf 13520689882699984885
Q gi|254780775|r 2 VASMMSSSPPDHIGIIMDGN 21 (243)
Q Consensus 2 ~~~~~~~~~P~HIaiImDGN 21 (243)
+..+...-.|.||||..|.-
T Consensus 46 L~kli~~~~P~~iavaFD~~ 65 (928)
T PRK07997 46 LRSLIMQYKPTHAAVVFDAK 65 (928)
T ss_pred HHHHHHHCCCCEEEEEEECC
T ss_conf 99999864998799998088
No 37
>smart00281 LamB Laminin B domain.
Probab=38.00 E-value=35 Score=15.96 Aligned_cols=51 Identities=27% Similarity=0.391 Sum_probs=34.9
Q ss_pred CCCCEEEECCCCEECC-----CCCCCHHCCCEEEECCCCCCC-----CCHHHHHHHHHHHHH
Q ss_conf 7652699457852133-----656401135538863687888-----898999999999863
Q gi|254780775|r 180 PDPDLIIRTGGEKRLS-----DFLLWQVAYSEFVFIPEYWPD-----FSRELFFHALNQYNL 231 (243)
Q Consensus 180 p~pDLlIRTsGe~RLS-----nFllwq~~ysEl~F~~~lWPd-----f~~~dl~~~i~~y~~ 231 (243)
..||++|. |+..+|+ .+.+.+...-++-|.+..|+. .+++||..+|.+-+.
T Consensus 41 ~~pdViL~-Gng~~L~~~~~~~~~p~~~~~~~v~l~e~~w~~~~~~~~tR~~~m~vLanl~~ 101 (127)
T smart00281 41 SAPDVILE-GNGLRISHPAEGPPLPDELTTVEVRFREENWQYFGGRPVTREDLMMVLANLTA 101 (127)
T ss_pred CCCCEEEE-CCCEEEEEECCCCCCCCCCEEEEEEEEECCCEECCCCCCCHHHHHHHHHCCCE
T ss_conf 89889998-89999998457788999856999999967866479975599999998747767
No 38
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=37.34 E-value=36 Score=15.90 Aligned_cols=11 Identities=0% Similarity=0.223 Sum_probs=4.3
Q ss_pred HHHHHHHHHHC
Q ss_conf 99999999976
Q gi|254780775|r 43 FNEIVAAAAEV 53 (243)
Q Consensus 43 l~~ii~~~~~~ 53 (243)
+.+++.+|.++
T Consensus 92 lr~ll~~~lDl 102 (416)
T cd06204 92 YRTALRHYLDI 102 (416)
T ss_pred HHHHHHHHHHH
T ss_conf 99999973675
No 39
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=35.42 E-value=34 Score=16.04 Aligned_cols=42 Identities=19% Similarity=0.396 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCE
Q ss_conf 157899877876436764896877811553101133678776526
Q gi|254780775|r 140 SRDEISRAIKNIFQDIESGSVCSHDVDSSLIAKYLDTSDVPDPDL 184 (243)
Q Consensus 140 gr~EI~~A~k~l~~~~~~~~~~~~~I~~~~i~~~L~~~~~p~pDL 184 (243)
+..|+.+.|+.+++...++++++|+-...+... + ...|.|.|
T Consensus 20 ~~pe~~~~Vr~LV~~L~~~~i~~EeF~~~Lq~~-l--ns~pqP~l 61 (92)
T smart00549 20 SQPEVAERVRTLVLGLVNGTITAEEFTSRLQEA-L--NSPLQPYL 61 (92)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-H--CCCCCCHH
T ss_conf 970798999999999981887899999999998-6--59997212
No 40
>PRK09482 xni exonuclease IX; Provisional
Probab=35.33 E-value=29 Score=16.50 Aligned_cols=55 Identities=24% Similarity=0.384 Sum_probs=30.3
Q ss_pred HHHCCCCCCCEEEEECCCC--HH-HHHHCCCCHHHHHHHH--------HHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 3520689882699984885--18-9997599877989999--------9999999999997698689997
Q gi|254780775|r 3 ASMMSSSPPDHIGIIMDGN--GR-WAAARGLPRCAGHRKG--------IEVFNEIVAAAAEVGIKNLTIF 61 (243)
Q Consensus 3 ~~~~~~~~P~HIaiImDGN--rR-wAk~~gl~~~~Gh~~G--------~~~l~~ii~~~~~~gI~~lTvy 61 (243)
..+...--|.||+++.||- .+ |=+ ....+|+++ ...+.-+-+++..+||+.++.-
T Consensus 39 ~kli~~~~P~~i~v~fD~~~~~~~fR~----e~~~~YKanR~~~pd~L~~Q~~~i~~~l~~~gi~~~~~~ 104 (256)
T PRK09482 39 DKLIRHSQPTHAVAVFDGDERSSGWRH----QLLPDYKAGRKPMPEALAQGLPAIRAAFEELGIDSWLAD 104 (256)
T ss_pred HHHHHHCCCCEEEEEEECCCCCCCCHH----HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 999997199879999847998765377----764887609999998999999999999997799898357
No 41
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=34.97 E-value=39 Score=15.66 Aligned_cols=96 Identities=13% Similarity=0.262 Sum_probs=54.9
Q ss_pred EECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9848851899975998779899999999999999997698689997202336-532301248888988863100001000
Q gi|254780775|r 16 IIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINN-WRRPVSEISELVKLIKSFLKKGFYSLK 94 (243)
Q Consensus 16 iImDGNrRwAk~~gl~~~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN-~~R~~~Ev~~L~~l~~~~l~~~~~~~~ 94 (243)
+-.+++||+.-.. +-..--++|.+.+.+.+..|.++||+.+.+-.. +. +..+.+|-. +.+.+.+.+-.+.+.
T Consensus 76 ~cls~~~~~Pl~S--~D~~~R~~~~e~~~kaI~lA~~LGi~~I~lag~--dv~~~~~~~e~~---~~f~e~L~~~~~~A~ 148 (283)
T PRK13209 76 MCLSAHRRFPLGS--EDDAVRAQGLEIMRKAIQLAQDLGIRVIQLAGY--DVYYEEANNETR---RRFIDGLKESVEMAS 148 (283)
T ss_pred EECCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCC--CCCCCCCCHHHH---HHHHHHHHHHHHHHH
T ss_conf 3054555799999--799999999999999999999809998996887--667887859999---999999999999999
Q ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf 0283263138744510000235899987
Q gi|254780775|r 95 KNNIKVRVIGNRLSLDDDILCVLKEAED 122 (243)
Q Consensus 95 ~~~iki~~iGd~~~lp~~i~~~i~~~e~ 122 (243)
+++|.+-+ +.++......+.++.+
T Consensus 149 ~~gV~L~i----E~~~~~f~~t~~~~~~ 172 (283)
T PRK13209 149 RYSVTLAF----EIMDTPFMGSISKALG 172 (283)
T ss_pred HHCCEEEE----EECCHHHHCCHHHHHH
T ss_conf 85998999----4255343215999999
No 42
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=34.35 E-value=40 Score=15.59 Aligned_cols=90 Identities=9% Similarity=0.086 Sum_probs=42.3
Q ss_pred CCCEEEEEECCCHH-HHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEC--CCCCCCHHCC
Q ss_conf 43115897248815-78998778764367648968778115531011336787765269945785213--3656401135
Q gi|254780775|r 128 TGLNLFIAFNYSSR-DEISRAIKNIFQDIESGSVCSHDVDSSLIAKYLDTSDVPDPDLIIRTGGEKRL--SDFLLWQVAY 204 (243)
Q Consensus 128 ~~~~Lnia~~Yggr-~EI~~A~k~l~~~~~~~~~~~~~I~~~~i~~~L~~~~~p~pDLlIRTsGe~RL--SnFllwq~~y 204 (243)
+.-.+-|+++|+|+ .|++++++.. ++.-...+ .|..+-.++-..--|.++-|+-+... +..+ -+..
T Consensus 187 ~~~Dv~i~iS~sG~t~e~i~~~~~A-k~~Ga~vI--------~IT~~~~SpLa~~aD~vL~~~~~e~~~~~~~~--~sr~ 255 (293)
T PRK11337 187 QEGDVVLVVSHSGRTSDVKAAVELA-KQNGAKII--------CITHSYHSPIAKLADYIICSPAPETPLLGRNA--SARI 255 (293)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHH-HHCCCEEE--------EECCCCCCHHHHHCCEEEECCCCCCCCCCCCH--HHHH
T ss_conf 9998899981899988999999999-98799499--------97699998468958998864887644344445--9999
Q ss_pred CEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 538863687888898999999999
Q gi|254780775|r 205 SEFVFIPEYWPDFSRELFFHALNQ 228 (243)
Q Consensus 205 sEl~F~~~lWPdf~~~dl~~~i~~ 228 (243)
+.++-+|.|.--+-..+...+...
T Consensus 256 ~ql~viD~L~~~~~~~~~~~~~~~ 279 (293)
T PRK11337 256 LQLTLLDAFFVSVAQLNIEQAEIN 279 (293)
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHH
T ss_conf 999999999999999788999999
No 43
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=34.25 E-value=40 Score=15.58 Aligned_cols=104 Identities=14% Similarity=0.201 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHH
Q ss_conf 99999999999976986899972023365323012488889888631000010000283263138744510000235899
Q gi|254780775|r 40 IEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKE 119 (243)
Q Consensus 40 ~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~ 119 (243)
.+.+.+.++|+.+.|+.-+.+..-+-|.+.-+.+|...+++...+.... ++.+- .|--..-..+..+.+..
T Consensus 17 ~~~~~~~i~~l~~~Gv~gi~v~G~tGE~~~Ls~~Er~~l~~~~~~~~~~--------~~pvi-~gv~~~s~~~~~~~a~~ 87 (281)
T cd00408 17 LDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAG--------RVPVI-AGVGANSTREAIELARH 87 (281)
T ss_pred HHHHHHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHHHHHCCC--------CCEEE-EECCCCCHHHHHHHHHH
T ss_conf 9999999999997699989968545243138999999999999998089--------85099-95787889999999999
Q ss_pred HHHHHCCCCCCEEEEEECC--CHHHHHHHHHHHHHHHH
Q ss_conf 9874202543115897248--81578998778764367
Q gi|254780775|r 120 AEDQTRLNTGLNLFIAFNY--SSRDEISRAIKNIFQDI 155 (243)
Q Consensus 120 ~e~~T~~n~~~~Lnia~~Y--ggr~EI~~A~k~l~~~~ 155 (243)
+++. .-...+-+.-.| .+.++|++-.+.+++.+
T Consensus 88 a~~~---Gad~i~v~pP~y~~~~~~~i~~~~~~i~~~~ 122 (281)
T cd00408 88 AEEA---GADGVLVVPPYYNKPSQEGIVAHFKAVADAS 122 (281)
T ss_pred HHHC---CCCEEEECCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 9975---9998998799777899999999999998555
No 44
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=33.39 E-value=31 Score=16.29 Aligned_cols=33 Identities=30% Similarity=0.648 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 87798999999999999999976986899972023
Q gi|254780775|r 31 PRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSI 65 (243)
Q Consensus 31 ~~~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~ 65 (243)
|...|+-.|..-+..++.-|.++||+ ++|+++|
T Consensus 75 pd~r~~G~G~~Ll~~~~~~Ar~~gi~--~~f~LTt 107 (153)
T COG1246 75 PDYRGSGRGERLLERLLADARELGIK--ELFVLTT 107 (153)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHCCCC--EEEEEEC
T ss_conf 87638870899999999998874970--1343314
No 45
>PRK09039 hypothetical protein; Validated
Probab=33.20 E-value=41 Score=15.48 Aligned_cols=16 Identities=19% Similarity=0.686 Sum_probs=9.6
Q ss_pred CCCC-CCCEEEECCCCE
Q ss_conf 7877-652699457852
Q gi|254780775|r 177 SDVP-DPDLIIRTGGEK 192 (243)
Q Consensus 177 ~~~p-~pDLlIRTsGe~ 192 (243)
+++| ++|=+||--|++
T Consensus 255 ~~Ip~~i~wilrVeGHT 271 (343)
T PRK09039 255 KEIPPEINWVLRVDGHT 271 (343)
T ss_pred HHCCCCCCCEEEEECCC
T ss_conf 63750146137750457
No 46
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=32.57 E-value=42 Score=15.41 Aligned_cols=44 Identities=18% Similarity=0.160 Sum_probs=18.6
Q ss_pred HHHHHHHHHHCCC-CEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9999999997698-68999720-233653230124888898886310
Q gi|254780775|r 43 FNEIVAAAAEVGI-KNLTIFAF-SINNWRRPVSEISELVKLIKSFLK 87 (243)
Q Consensus 43 l~~ii~~~~~~gI-~~lTvyaf-S~eN~~R~~~Ev~~L~~l~~~~l~ 87 (243)
+.++..+....+. +.-|+|-= -|=+ -=|++++..|+..+...+.
T Consensus 42 ~~el~~~~~~~~~~~i~TIyfGGGTPS-lL~~~~l~~ll~~i~~~~~ 87 (353)
T PRK05904 42 LKNIKMHIKNFKIKQFKTIYLGGGTPN-CLNDQLLDILLSTIKPYVD 87 (353)
T ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCH-HCCHHHHHHHHHHHHHHCC
T ss_conf 999999987647995448998998602-0899999999999997638
No 47
>pfam05094 LEF-9 Late expression factor 9 (LEF-9). Late expression factor 9 (LEF-9) is one of the primary components of RNA polymerase produced by baculoviruses. LEF-9 is homologous to the largest beta-subunit of prokaryotic DNA-directed RNA polymerase.
Probab=31.90 E-value=25 Score=16.83 Aligned_cols=35 Identities=34% Similarity=0.656 Sum_probs=15.7
Q ss_pred CCHHHHHHHHHCCCCCCCCCCC-CCEEEECCCCEECCCCCCCH
Q ss_conf 6877811553101133678776-52699457852133656401
Q gi|254780775|r 160 VCSHDVDSSLIAKYLDTSDVPD-PDLIIRTGGEKRLSDFLLWQ 201 (243)
Q Consensus 160 ~~~~~I~~~~i~~~L~~~~~p~-pDLlIRTsGe~RLSnFllwq 201 (243)
+-..|+.+..|-+.|-+....| .|-|| |.||.||.
T Consensus 84 ivvTdl~~nVFlkKLKtnkfTD~idyLI-------LPnFilWD 119 (487)
T pfam05094 84 VVVTDLPSNVFLKKLKTNKFTDDINYLI-------LPNFILWD 119 (487)
T ss_pred EEEEECCCHHHHHHHCCCCCCCCCCEEE-------ECCCCCCC
T ss_conf 8994074024567741577656565576-------63400014
No 48
>COG0218 Predicted GTPase [General function prediction only]
Probab=31.50 E-value=27 Score=16.65 Aligned_cols=14 Identities=0% Similarity=-0.123 Sum_probs=7.4
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 89899999999986
Q gi|254780775|r 217 FSRELFFHALNQYN 230 (243)
Q Consensus 217 f~~~dl~~~i~~y~ 230 (243)
++.+++..+|..+-
T Consensus 183 ~Gi~~l~~~i~~~~ 196 (200)
T COG0218 183 KGIDELKAKILEWL 196 (200)
T ss_pred CCHHHHHHHHHHHH
T ss_conf 48999999999986
No 49
>pfam10163 EnY2 Transcription factor e(y)2. EnY2 is a small transcription factor which is combined in a complex with the TAFII40 protein. The protein is conserved from paramecium to humans.
Probab=31.42 E-value=43 Score=15.34 Aligned_cols=47 Identities=17% Similarity=0.213 Sum_probs=29.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 87445100002358999874202543115897248815789987787643676489687781155
Q gi|254780775|r 104 GNRLSLDDDILCVLKEAEDQTRLNTGLNLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHDVDSS 168 (243)
Q Consensus 104 Gd~~~lp~~i~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~k~l~~~~~~~~~~~~~I~~~ 168 (243)
|+.+.|.+-++..+.++ |+++||-+.|+.+.++.-...++.+++-..
T Consensus 14 Ge~e~lk~lL~~rL~Ec------------------GW~Devk~~~r~~i~~~~~~~~t~d~L~~~ 60 (86)
T pfam10163 14 GEYERIKELLRQRLVEC------------------GWRDEVKQLCREIIKEKGIDNLNFDDLYDV 60 (86)
T ss_pred CCHHHHHHHHHHHHHHC------------------CCHHHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 77999999999888888------------------639999999999998707789999999999
No 50
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=30.63 E-value=46 Score=15.21 Aligned_cols=52 Identities=23% Similarity=0.232 Sum_probs=36.0
Q ss_pred CCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC-CCCH
Q ss_conf 88269998488518999759987798999999999999999976986899972023365-3230
Q gi|254780775|r 10 PPDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNW-RRPV 72 (243)
Q Consensus 10 ~P~HIaiImDGNrRwAk~~gl~~~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~-~R~~ 72 (243)
.|.+||.=+|||+=|=+...-+ |++ ..++..-.+.||+|+.+| +.||- .|+.
T Consensus 222 ~~~~i~~aPdGNGG~y~AL~~s---g~~------~~iL~dm~~rGI~yi~~~--~VDN~L~kva 274 (499)
T PTZ00339 222 SRGSLCTAPGGNGDVFKALAKC---SEF------MSILDKLEKLGIKYVQII--SIDNILAKVA 274 (499)
T ss_pred CCCCEEECCCCCHHHHHHHHHC---CCH------HHHHHHHHHCCCEEEEEE--EECCCCCCCC
T ss_conf 8880687789963899998862---431------127999997498699999--8653332467
No 51
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase; InterPro: IPR012767 This enzyme, formally named (1->4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis..
Probab=30.23 E-value=14 Score=18.40 Aligned_cols=17 Identities=24% Similarity=0.593 Sum_probs=11.8
Q ss_pred CCCEEEEE-CCCCHHHHH
Q ss_conf 88269998-488518999
Q gi|254780775|r 10 PPDHIGII-MDGNGRWAA 26 (243)
Q Consensus 10 ~P~HIaiI-mDGNrRwAk 26 (243)
+|||+|+= +-.|+.|--
T Consensus 93 VPNHma~~~p~~N~WW~D 110 (971)
T TIGR02401 93 VPNHMAVHEPEQNAWWWD 110 (971)
T ss_pred CCCHHHCCCCCCCCCHHH
T ss_conf 576244077888875689
No 52
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=30.22 E-value=46 Score=15.16 Aligned_cols=88 Identities=20% Similarity=0.315 Sum_probs=46.7
Q ss_pred CCCEEEECCCC-CCCCCCCHHHHHHHHHHHCCCCCCEEEEEECC--CHHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHC
Q ss_conf 28326313874-45100002358999874202543115897248--81578998778764367648968-7781155310
Q gi|254780775|r 96 NNIKVRVIGNR-LSLDDDILCVLKEAEDQTRLNTGLNLFIAFNY--SSRDEISRAIKNIFQDIESGSVC-SHDVDSSLIA 171 (243)
Q Consensus 96 ~~iki~~iGd~-~~lp~~i~~~i~~~e~~T~~n~~~~Lnia~~Y--ggr~EI~~A~k~l~~~~~~~~~~-~~~I~~~~i~ 171 (243)
.+++|-++||. +.....+.... ..-++.+.+|.+- .-..+++..+++.++..- +.+. .+++ .
T Consensus 155 ~~lkia~vGD~~nnv~~Sl~~~~--------~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~g-~~i~~~~d~-----~ 220 (334)
T PRK03515 155 NEMTLAYAGDARNNMGNSLLEAA--------ALTGLDLRLVAPKACWPEAALVTECQALAQKNG-GNITLTEDI-----A 220 (334)
T ss_pred CCEEEEEECCCCCCHHHHHHHHH--------HHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHC-CCEEEECCH-----H
T ss_conf 66489995787654589999999--------854974999779756888789999999999719-918996045-----6
Q ss_pred CCCCCCCCCCCCEEEE-----CC--C---CEECCCCCCCHH
Q ss_conf 1133678776526994-----57--8---521336564011
Q gi|254780775|r 172 KYLDTSDVPDPDLIIR-----TG--G---EKRLSDFLLWQV 202 (243)
Q Consensus 172 ~~L~~~~~p~pDLlIR-----Ts--G---e~RLSnFllwq~ 202 (243)
+ .+.+.|+|.- .| . +.|+.-|-.||+
T Consensus 221 e-----a~~~aDviytd~w~smg~~~~~~~er~~~~~~y~v 256 (334)
T PRK03515 221 E-----GVKGADFIYTDVWVSMGEPKEKWAERIALLRDYQV 256 (334)
T ss_pred H-----HHCCCCEEEEEHHHHCCCHHHHHHHHHHHHHCCEE
T ss_conf 5-----51578788730213223246668989876125252
No 53
>pfam03851 UvdE UV-endonuclease UvdE.
Probab=29.76 E-value=47 Score=15.11 Aligned_cols=110 Identities=9% Similarity=0.144 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC---CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEC-CCCCCC--
Q ss_conf 999999999999999976986899972023365---32301248888988863100001000028326313-874451--
Q gi|254780775|r 36 HRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNW---RRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVI-GNRLSL-- 109 (243)
Q Consensus 36 h~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~---~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~i-Gd~~~l-- 109 (243)
-..-+..+.++++||.+.||+ +|=+|++=| .-|..+.+ +...+...|.+--..+.++++|+.+= |-..-|
T Consensus 39 ~l~Nl~~l~~il~~n~~~~I~---~yRiSS~lfP~~shp~~~~~-~~~~~~~~l~~iG~~a~~~~~Rls~HPgqf~vL~S 114 (275)
T pfam03851 39 GKQNLRNLIRLLHYNIAHGIR---LYRLSSSLFPLASHPDVGWK-YETFAAPELREAGELAKEHGHRLTFHPGQFTVLNS 114 (275)
T ss_pred HHHHHHHHHHHHHHHHHCCCC---EEEECCCCCCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHCCCEEEECCCCCEECCC
T ss_conf 999999999999988875976---69814020466778423620-48999999999999999829558748997221699
Q ss_pred --CCCCHHHHHHHHHHHC----------CCCCCEEEEEECCCHHHHHHHHHH
Q ss_conf --0000235899987420----------254311589724881578998778
Q gi|254780775|r 110 --DDDILCVLKEAEDQTR----------LNTGLNLFIAFNYSSRDEISRAIK 149 (243)
Q Consensus 110 --p~~i~~~i~~~e~~T~----------~n~~~~Lnia~~Yggr~EI~~A~k 149 (243)
|+-+...|.+.+--.. ....+++-+--.||++.+.++-..
T Consensus 115 ~~~~Vv~~si~dL~~Ha~~ld~mgl~~~~~~~inIH~gg~ygdk~~~~~Rf~ 166 (275)
T pfam03851 115 PRPEVTESAIRDMAYHYRLLDGMGLAERPDAVLIIHVGGAFGGKEATLERFH 166 (275)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHH
T ss_conf 9889999999998669999998089976673478732676698889999999
No 54
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=29.66 E-value=47 Score=15.10 Aligned_cols=51 Identities=14% Similarity=0.347 Sum_probs=37.3
Q ss_pred CCCCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 68988269998488518999759987798999999999999999976986899972
Q gi|254780775|r 7 SSSPPDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFA 62 (243)
Q Consensus 7 ~~~~P~HIaiImDGNrRwAk~~gl~~~~Gh~~G~~~l~~ii~~~~~~gI~~lTvya 62 (243)
..-.|.-|-++||--.-+-..+|+... +..+.|.+++.-+.+.||+ +|+|.
T Consensus 83 ~~~kP~qvtLVPe~r~e~TTegGld~~----~~~~~L~~~i~~lk~~gIr-vSLFi 133 (240)
T PRK05265 83 LEIKPHQVTLVPEKREELTTEGGLDVA----GQFDKLKPAIARLKDAGIR-VSLFI 133 (240)
T ss_pred HHCCCCEEEECCCCCCCCCCCCCCCCC----CHHHHHHHHHHHHHHCCCE-EEEEE
T ss_conf 984998599888998862678893776----5789999999999865981-79972
No 55
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=29.32 E-value=48 Score=15.06 Aligned_cols=29 Identities=24% Similarity=0.455 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 99999999999976986899972023365
Q gi|254780775|r 40 IEVFNEIVAAAAEVGIKNLTIFAFSINNW 68 (243)
Q Consensus 40 ~~~l~~ii~~~~~~gI~~lTvyafS~eN~ 68 (243)
.+.+.+.++..+++++.+||+|.+..+.+
T Consensus 203 ~~~~~~~l~~a~~l~pdhis~y~L~~~p~ 231 (416)
T COG0635 203 LESLKEDLEQALELGPDHLSLYSLAIEPG 231 (416)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEEEECCC
T ss_conf 99999999999834998786462686588
No 56
>PRK08786 consensus
Probab=28.95 E-value=42 Score=15.42 Aligned_cols=18 Identities=17% Similarity=0.519 Sum_probs=12.2
Q ss_pred HHCCCCCCCEEEEECCCCH
Q ss_conf 5206898826999848851
Q gi|254780775|r 4 SMMSSSPPDHIGIIMDGNG 22 (243)
Q Consensus 4 ~~~~~~~P~HIaiImDGNr 22 (243)
.+... -|.|+||..|.-+
T Consensus 43 kl~~e-~p~~~~v~fD~~~ 60 (927)
T PRK08786 43 ATLKE-RPAYVAFVVDAPG 60 (927)
T ss_pred HHHHH-CCCEEEEEEECCC
T ss_conf 99987-8898999996959
No 57
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=28.79 E-value=49 Score=15.01 Aligned_cols=76 Identities=21% Similarity=0.253 Sum_probs=47.8
Q ss_pred HHHH-HHHHHHHHHCCCCEEEEEE---CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHH
Q ss_conf 9999-9999999976986899972---02336532301248888988863100001000028326313874451000023
Q gi|254780775|r 40 IEVF-NEIVAAAAEVGIKNLTIFA---FSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILC 115 (243)
Q Consensus 40 ~~~l-~~ii~~~~~~gI~~lTvya---fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~iGd~~~lp~~i~~ 115 (243)
.+.. ..+-.||...|...+-+|. .|--+.+||.- . .|+ ..+.+.++.+-++=+++.|.-+..+
T Consensus 20 i~~Q~~~~~~~a~~~g~~vv~~y~D~g~SG~~~~Rp~~--~---~ml--------~~~~~g~~d~vlv~~ldRl~R~~~~ 86 (140)
T cd03770 20 IENQKAILEEYAKENGLENIRHYIDDGFSGTTFDRPGF--N---RMI--------EDIEAGKIDIVIVKDMSRLGRNYLK 86 (140)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCHHH--H---HHH--------HHHHCCCCCEEEEEECCHHCCCHHH
T ss_conf 99999999999998899698999846867763358889--9---999--------9998699758999858343367799
Q ss_pred HHHHHHHH-HCCCC
Q ss_conf 58999874-20254
Q gi|254780775|r 116 VLKEAEDQ-TRLNT 128 (243)
Q Consensus 116 ~i~~~e~~-T~~n~ 128 (243)
.+..++.. .+.+-
T Consensus 87 ~~~~~~~l~~~~gv 100 (140)
T cd03770 87 VGLYMEILFPKKGV 100 (140)
T ss_pred HHHHHHHHHHHCCC
T ss_conf 99999999876793
No 58
>COG2056 Predicted permease [General function prediction only]
Probab=28.57 E-value=25 Score=16.87 Aligned_cols=46 Identities=20% Similarity=0.236 Sum_probs=25.4
Q ss_pred HHHCCCCCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 3520689882699984885189997599877989999999999999999769868
Q gi|254780775|r 3 ASMMSSSPPDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKN 57 (243)
Q Consensus 3 ~~~~~~~~P~HIaiImDGNrRwAk~~gl~~~~Gh~~G~~~l~~ii~~~~~~gI~~ 57 (243)
+....+-+|-|||||| -=+|..----.-.+-=++.+..+...|...
T Consensus 112 a~~SQNliPVHIAFIP---------ilIPPLL~lfn~LkiDRR~vAc~ltFGL~a 157 (444)
T COG2056 112 ACFSQNLIPVHIAFIP---------ILIPPLLSLFNKLKIDRRLVACVLTFGLTA 157 (444)
T ss_pred HHHCCCCCCEEEEEEH---------HHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9950785302443002---------002189999887334678888886314566
No 59
>TIGR01979 sufS cysteine desulfurases, SufS subfamily; InterPro: IPR010970 Cysteine desulphurases are pyridoxal-phosphate enzymes which catalyse the removal of sulphur from L-cysteine to form L-alanine and elemental sulphur. These enzymes have been shown to play an important role in the biosynthesis of iron-sulphur clusters, thionucleosides in tRNA, thiamine, biotin, lipoate and molydopterin This entry represents a subfamily of NifS-related cysteine desulphurases that are often involved in iron-sulphur cluster formation, which is needed for nitrogen fixation and other vital functions . Many of these enzymes, in addition to cysteine desulphurase activity, also show selenocysteine lyase activity where L-selenocysteine is converted to L-alanine and selenide . Some of these enzymes are much more specific for selenocysteine than cysteine and are thus believed to function in selenium metabolism rather than sulphur metabolism. Structural studies of the E. coli and Synechocystis enzymes indicate that they are homodimers which show a similar fold to other members of the alpha family of pyridoxal-phosphate enzymes .; GO: 0030170 pyridoxal phosphate binding, 0031071 cysteine desulfurase activity, 0006534 cysteine metabolic process.
Probab=28.44 E-value=39 Score=15.61 Aligned_cols=44 Identities=23% Similarity=0.311 Sum_probs=24.9
Q ss_pred CCEEEECCCCEECCCCCCCHHC----CCEEEECCCCCCC--CCHHHHHHHHH
Q ss_conf 5269945785213365640113----5538863687888--89899999999
Q gi|254780775|r 182 PDLIIRTGGEKRLSDFLLWQVA----YSEFVFIPEYWPD--FSRELFFHALN 227 (243)
Q Consensus 182 pDLlIRTsGe~RLSnFllwq~~----ysEl~F~~~lWPd--f~~~dl~~~i~ 227 (243)
=|-|+=|==|- =||+.|||.. -|.|=|++.. || +..++|...|.
T Consensus 113 GDeIv~s~mEH-HaNiVPWQ~l~~r~GA~lk~~~l~-~~G~ld~~~l~~~~~ 162 (409)
T TIGR01979 113 GDEIVISEMEH-HANIVPWQLLAERTGATLKFIPLD-DDGTLDLDDLEELLT 162 (409)
T ss_pred CCEEEECCHHH-HCCHHHHHHHHHHHCCEEEEEECC-CCCEEEHHHHHHHHH
T ss_conf 88798401110-012147999997609878997448-876051888998832
No 60
>PHA01748 hypothetical protein
Probab=27.95 E-value=51 Score=14.91 Aligned_cols=22 Identities=36% Similarity=0.453 Sum_probs=14.6
Q ss_pred HHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 8999759987798999999999
Q gi|254780775|r 23 RWAAARGLPRCAGHRKGIEVFN 44 (243)
Q Consensus 23 RwAk~~gl~~~~Gh~~G~~~l~ 44 (243)
|||-++|+++++.-++.++++.
T Consensus 19 rYAik~~lnRSEaIRkAIe~mV 40 (60)
T PHA01748 19 RYAIKHKLNRSEAIRKAIEKLV 40 (60)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999947778899999999999
No 61
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=27.06 E-value=53 Score=14.81 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=10.8
Q ss_pred CCCEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 2832631387445100002358999
Q gi|254780775|r 96 NNIKVRVIGNRLSLDDDILCVLKEA 120 (243)
Q Consensus 96 ~~iki~~iGd~~~lp~~i~~~i~~~ 120 (243)
+|..|-++|+...+++++.+.+.++
T Consensus 201 ~ga~iyVCG~~~~Ma~~V~~aL~~I 225 (245)
T cd06200 201 EGAAIYVCGSLQGMAPGVDAVLDEI 225 (245)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHH
T ss_conf 7949999899416579999999999
No 62
>cd03330 Macro_2 Macro domain, Unknown family 2. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a stand-alone macro domain.
Probab=27.04 E-value=53 Score=14.81 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=7.7
Q ss_pred HHCCCCEEEEEECCCCCCCCCHH
Q ss_conf 97698689997202336532301
Q gi|254780775|r 51 AEVGIKNLTIFAFSINNWRRPVS 73 (243)
Q Consensus 51 ~~~gI~~lTvyafS~eN~~R~~~ 73 (243)
.+.+++.+.+=++|+-++.=|++
T Consensus 100 ~~~~~~SIA~P~igtG~~g~p~~ 122 (133)
T cd03330 100 DELGIESVAFPAMGTGVGGLPKE 122 (133)
T ss_pred HHCCCCEEEECCCCCCCCCCCHH
T ss_conf 98599889988603678788989
No 63
>pfam01228 Gly_radical Glycine radical.
Probab=26.81 E-value=53 Score=14.79 Aligned_cols=11 Identities=45% Similarity=0.758 Sum_probs=9.6
Q ss_pred CCCEEEECCCC
Q ss_conf 65269945785
Q gi|254780775|r 181 DPDLIIRTGGE 191 (243)
Q Consensus 181 ~pDLlIRTsGe 191 (243)
-|||+||.+|.
T Consensus 91 y~~L~vRVsGY 101 (106)
T pfam01228 91 YPDLTVRVSGY 101 (106)
T ss_pred CCCEEEEECCC
T ss_conf 69869980400
No 64
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=26.80 E-value=53 Score=14.78 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 999999999999769868999720233
Q gi|254780775|r 40 IEVFNEIVAAAAEVGIKNLTIFAFSIN 66 (243)
Q Consensus 40 ~~~l~~ii~~~~~~gI~~lTvyafS~e 66 (243)
.+.+.+-++.+.++++.++|+|.++.|
T Consensus 165 ~e~~~~~l~~~~~l~p~HiS~Y~L~ie 191 (351)
T PRK08446 165 KKLLKEELKLAKELPITHLSAYALTIE 191 (351)
T ss_pred HHHHHHHHHHHHCCCCCEEECCCCEEC
T ss_conf 999999999997489697974230446
No 65
>pfam07531 TAFH NHR1 homology to TAF. This corresponds to the region NHR1 that is conserved between the product of the nervy gene in Drosophila and the human mtg8b protein, which is hypothesized to be a transcription factor.
Probab=26.23 E-value=54 Score=14.72 Aligned_cols=43 Identities=19% Similarity=0.419 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCEE
Q ss_conf 1578998778764367648968778115531011336787765269
Q gi|254780775|r 140 SRDEISRAIKNIFQDIESGSVCSHDVDSSLIAKYLDTSDVPDPDLI 185 (243)
Q Consensus 140 gr~EI~~A~k~l~~~~~~~~~~~~~I~~~~i~~~L~~~~~p~pDLl 185 (243)
.-.||.+.|+.+++...++++++++-...+... + ...|.|.++
T Consensus 21 ~~pe~~~~Vr~LV~~L~~~~i~~EeF~~~Lq~~-l--ns~pqP~lv 63 (96)
T pfam07531 21 QSPEVGERVRTLVLGLVDGKLEAEEFTSKLQEA-L--NSSPQPYLV 63 (96)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-H--CCCCCCCHH
T ss_conf 882588999999999980887899999999998-6--699983019
No 66
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=26.02 E-value=55 Score=14.70 Aligned_cols=67 Identities=16% Similarity=0.062 Sum_probs=44.3
Q ss_pred CCCCCCEEEEECCCC-----HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 689882699984885-----189997599877989999999999999999769868999720233653230124888898
Q gi|254780775|r 7 SSSPPDHIGIIMDGN-----GRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKL 81 (243)
Q Consensus 7 ~~~~P~HIaiImDGN-----rRwAk~~gl~~~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l 81 (243)
...+ +|+|=.||= +|=-.++|.+. ++++.+-+++..+.+|+..+.+....+|+..+.+..++|...
T Consensus 112 ~~~~--~IgISiDGp~eihD~~R~~~~GkgT-------fd~i~~~i~~L~~~~v~~~~~~vv~~~n~~~~~ei~~~l~~~ 182 (378)
T COG0641 112 EHDF--LIGISIDGPEEIHDKYRVTKSGKGT-------FDRVMKGLELLQAHGVDFNTLTVVNRQNVLHPEEIYHFLKSE 182 (378)
T ss_pred HCCC--EEEEECCCCHHHHCCCCCCCCCCCC-------HHHHHHHHHHHHHCCCCEEEEEEECHHHHHCHHHHHHHHHHC
T ss_conf 5296--6999666817761110357899856-------999999999999758846999997644530799999999973
Q ss_pred H
Q ss_conf 8
Q gi|254780775|r 82 I 82 (243)
Q Consensus 82 ~ 82 (243)
.
T Consensus 183 g 183 (378)
T COG0641 183 G 183 (378)
T ss_pred C
T ss_conf 7
No 67
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=25.64 E-value=56 Score=14.65 Aligned_cols=91 Identities=4% Similarity=0.009 Sum_probs=44.5
Q ss_pred CCEEEEEECCCHHH-HHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEECCCCCCCHHCCCEE
Q ss_conf 31158972488157-89987787643676489687781155310113367877652699457852133656401135538
Q gi|254780775|r 129 GLNLFIAFNYSSRD-EISRAIKNIFQDIESGSVCSHDVDSSLIAKYLDTSDVPDPDLIIRTGGEKRLSDFLLWQVAYSEF 207 (243)
Q Consensus 129 ~~~Lnia~~Yggr~-EI~~A~k~l~~~~~~~~~~~~~I~~~~i~~~L~~~~~p~pDLlIRTsGe~RLSnFllwq~~ysEl 207 (243)
.-.+-|+++|+|+. |++++++... +.-...+ -|+ +. .+|-..--|.++.++...-...+-..-+..+.+
T Consensus 175 ~~Dvvi~iS~sG~t~e~i~~~~~Ak-~~ga~vI---aIT-----~~-~SpLa~~AD~~L~~~~~e~~~~~~~~~sriaql 244 (284)
T PRK11302 175 DGDVVVLISHTGRTKSLVELAQLAR-ENGATVI---GIT-----AA-GSPLAREATLALTLDVPEDTDIYMPMVSRIAQL 244 (284)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH-HCCCCEE---EEC-----CC-CCHHHHHCCEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 9888999737999879999999999-8799589---977-----99-981488689889846776540110469999999
Q ss_pred EECCCCCCCCCHHHHHHHHHHH
Q ss_conf 8636878888989999999998
Q gi|254780775|r 208 VFIPEYWPDFSRELFFHALNQY 229 (243)
Q Consensus 208 ~F~~~lWPdf~~~dl~~~i~~y 229 (243)
+-+|.|.-.+-..+...+-...
T Consensus 245 ~viD~L~~~~~~~~~~~~~~~l 266 (284)
T PRK11302 245 TVIDVLATGFTLRRGAKFRDNL 266 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999998249999999
No 68
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain; InterPro: IPR012821 Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by IPR012822 from INTERPRO..
Probab=24.83 E-value=40 Score=15.58 Aligned_cols=25 Identities=36% Similarity=0.684 Sum_probs=15.7
Q ss_pred CCCCCCEEEECCCCEECCCCCCCHHCCCEEEECCCCCCC
Q ss_conf 877652699457852133656401135538863687888
Q gi|254780775|r 178 DVPDPDLIIRTGGEKRLSDFLLWQVAYSEFVFIPEYWPD 216 (243)
Q Consensus 178 ~~p~pDLlIRTsGe~RLSnFllwq~~ysEl~F~~~lWPd 216 (243)
.+|.||++|=.= -||+|+-+.+=||
T Consensus 55 ~lP~Pdvl~a~~--------------GtEi~Y~~~l~~D 79 (241)
T TIGR02471 55 NLPSPDVLIARV--------------GTEIYYGPELQPD 79 (241)
T ss_pred CCCCCHHHHHHC--------------CCEEEECCCCCCC
T ss_conf 797860221104--------------6414425567767
No 69
>TIGR00020 prfB peptide chain release factor 2; InterPro: IPR004374 In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a superfamily IPR000352 from INTERPRO of RF-1, RF-2, mitochondrial, RF-H, etc proteins.; GO: 0016149 translation release factor activity codon specific, 0006415 translational termination, 0005737 cytoplasm.
Probab=24.25 E-value=14 Score=18.58 Aligned_cols=10 Identities=50% Similarity=0.979 Sum_probs=5.2
Q ss_pred HHHHHCCCCH
Q ss_conf 8999759987
Q gi|254780775|r 23 RWAAARGLPR 32 (243)
Q Consensus 23 RwAk~~gl~~ 32 (243)
|||.++|...
T Consensus 160 RWAE~rgykv 169 (373)
T TIGR00020 160 RWAERRGYKV 169 (373)
T ss_pred HHHHCCCCEE
T ss_conf 7641057513
No 70
>PRK07556 consensus
Probab=24.02 E-value=60 Score=14.46 Aligned_cols=52 Identities=17% Similarity=0.261 Sum_probs=23.3
Q ss_pred CCCCEEEEECCCCHHHHHHCCCCHHHHHHHH----HH-HHHHHHHHHHHCCCCEEEE
Q ss_conf 9882699984885189997599877989999----99-9999999999769868999
Q gi|254780775|r 9 SPPDHIGIIMDGNGRWAAARGLPRCAGHRKG----IE-VFNEIVAAAAEVGIKNLTI 60 (243)
Q Consensus 9 ~~P~HIaiImDGNrRwAk~~gl~~~~Gh~~G----~~-~l~~ii~~~~~~gI~~lTv 60 (243)
..|.||||..|.-+.=-+..=.+...+|+.- .. -+--|-+++..+||+.+++
T Consensus 59 ~~p~~iavaFD~~~~TFRhe~y~~YKA~R~~~PedL~~Qip~i~e~l~algIp~l~~ 115 (977)
T PRK07556 59 DVPTHLAVIFDYSSKTFRNEIYPQYKANRPAPPEDLIPQFPLIREATRAFNLPCIEK 115 (977)
T ss_pred CCCCEEEEEEECCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 799889999808899601222056527999998899999999999999879988546
No 71
>pfam03579 SHP Small hydrophobic protein. The small hydrophobic integral membrane protein, SH (previously designated 1A) is found to have a variety of glycosylated forms. This protein is a component of the mature virion.
Probab=23.90 E-value=41 Score=15.50 Aligned_cols=25 Identities=16% Similarity=0.513 Sum_probs=18.0
Q ss_pred CEEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 5388636878888989999999998
Q gi|254780775|r 205 SEFVFIPEYWPDFSRELFFHALNQY 229 (243)
Q Consensus 205 sEl~F~~~lWPdf~~~dl~~~i~~y 229 (243)
+-+-|+.+.||-|+..+....|-.|
T Consensus 6 ~~IEFtskFW~YFTL~~Milti~~f 30 (64)
T pfam03579 6 ITIEFTSKFWPYFTLVHMILTIISF 30 (64)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 8977323332699999999999999
No 72
>PRK13907 rnhA ribonuclease H; Provisional
Probab=23.86 E-value=56 Score=14.63 Aligned_cols=58 Identities=12% Similarity=0.120 Sum_probs=41.1
Q ss_pred CCCCCCEEEEECCCCHH-HHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 68988269998488518-99975998779899999999999999997698689997202
Q gi|254780775|r 7 SSSPPDHIGIIMDGNGR-WAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFS 64 (243)
Q Consensus 7 ~~~~P~HIaiImDGNrR-wAk~~gl~~~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS 64 (243)
.+|=|.-+|++..+... ......+....-|.+=+..++.-++.|.+.|+..|.+|.=|
T Consensus 12 gNPG~ag~Gv~i~~~~~~~~~~~~lg~~TNN~AEy~Ali~gL~~a~~~~~~~l~i~~DS 70 (128)
T PRK13907 12 GNPGPSGAGVFIKGVQPAVQLSLPLGTMSNHEAEYHALLAALKYCTEHNYNIVSFRTDS 70 (128)
T ss_pred CCCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf 99977069999990986799986148755779999999999999997699879998221
No 73
>PRK07300 consensus
Probab=23.58 E-value=42 Score=15.46 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=17.1
Q ss_pred CHHHHCCCCCCCEEEEECCCCH
Q ss_conf 9135206898826999848851
Q gi|254780775|r 1 MVASMMSSSPPDHIGIIMDGNG 22 (243)
Q Consensus 1 l~~~~~~~~~P~HIaiImDGNr 22 (243)
|+..+...-.|.||||+.|.-+
T Consensus 47 mL~kli~~~~P~~iavaFD~~~ 68 (880)
T PRK07300 47 MLDHMMKRVQPTHVLVAFDAGK 68 (880)
T ss_pred HHHHHHHHCCCCEEEEEEECCC
T ss_conf 9999998649988999996959
No 74
>PRK05755 DNA polymerase I; Provisional
Probab=23.31 E-value=54 Score=14.75 Aligned_cols=58 Identities=17% Similarity=0.259 Sum_probs=29.8
Q ss_pred HHHHCCCCCCCEEEEECCCCHHHHHHCCCCHHHHHHHH--------HHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 13520689882699984885189997599877989999--------99999999999976986899972
Q gi|254780775|r 2 VASMMSSSPPDHIGIIMDGNGRWAAARGLPRCAGHRKG--------IEVFNEIVAAAAEVGIKNLTIFA 62 (243)
Q Consensus 2 ~~~~~~~~~P~HIaiImDGNrRwAk~~gl~~~~Gh~~G--------~~~l~~ii~~~~~~gI~~lTvya 62 (243)
+-.+...-.|.||||..|.-+.=-+. .....|+++ ..-+.-+-+++..+||+.+++=.
T Consensus 44 l~~~~~~~~p~~~~v~fD~~~~tfR~---~~y~~YKa~R~~~P~~l~~Q~~~i~~~l~~~gi~~~~~~g 109 (889)
T PRK05755 44 LLKLLKDEKPTHIAVAFDAKGKTFRH---ELYPEYKANRPPMPEDLREQIPLLREALEALGIPLLEVEG 109 (889)
T ss_pred HHHHHHHCCCCEEEEEECCCCCCCCC---CCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 99999862998899996398996352---1055642799999989999999999999987998864689
No 75
>TIGR02128 G6PI_arch bifunctional phosphoglucose/phosphomannose isomerase; InterPro: IPR011857 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyzes the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals . Three classes of PMI have been defined . These bifunctional isomerases form a distinct phylogenetic cluster within the larger phosphoglucose isomerase (PGI) superfamily . They show relatively low sequence identity to other PGIs, but contain similar structural elements and show almost complete conservation of the catalytic residues in the active site, indicating they use a similar catalytic mechanism . The family appears to have originated in the archaea, with the bacterial proteins being acquired through horizontal transfer.; GO: 0004347 glucose-6-phosphate isomerase activity, 0004476 mannose-6-phosphate isomerase activity.
Probab=23.11 E-value=57 Score=14.60 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=12.5
Q ss_pred CEEEEEECCCHH-HHHHHHHHHH
Q ss_conf 115897248815-7899877876
Q gi|254780775|r 130 LNLFIAFNYSSR-DEISRAIKNI 151 (243)
Q Consensus 130 ~~Lnia~~Yggr-~EI~~A~k~l 151 (243)
-.+-||++|+|- .|=+.|+..+
T Consensus 73 ~~~lIAvSYSGNT~ETl~~~e~A 95 (338)
T TIGR02128 73 KTLLIAVSYSGNTEETLSAVEEA 95 (338)
T ss_pred CEEEEEEECCCCHHHHHHHHHHH
T ss_conf 51799986178668999999999
No 76
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=23.05 E-value=62 Score=14.34 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=9.6
Q ss_pred CCEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 832631387445100002358999
Q gi|254780775|r 97 NIKVRVIGNRLSLDDDILCVLKEA 120 (243)
Q Consensus 97 ~iki~~iGd~~~lp~~i~~~i~~~ 120 (243)
+..|-+.|+...+++++.+.+.++
T Consensus 214 ~a~iYvCG~~~~M~~~V~~~l~~i 237 (267)
T cd06182 214 GAHIYVCGDAKSMAKDVEDALVKI 237 (267)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHH
T ss_conf 979999788321068999999999
No 77
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=23.02 E-value=62 Score=14.34 Aligned_cols=30 Identities=13% Similarity=0.293 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 999999999999976986899972023365
Q gi|254780775|r 39 GIEVFNEIVAAAAEVGIKNLTIFAFSINNW 68 (243)
Q Consensus 39 G~~~l~~ii~~~~~~gI~~lTvyafS~eN~ 68 (243)
..+.+.+-++.+.++++.+||+|.+..|-+
T Consensus 168 t~~~~~~~l~~~~~l~p~hiS~Y~L~iep~ 197 (374)
T PRK06294 168 SLSDFIMDLHQALTLPITHISLYNLTIDPH 197 (374)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEEEEECCC
T ss_conf 889999999999734967455555576589
No 78
>COG4401 AroH Chorismate mutase [Amino acid transport and metabolism]
Probab=22.10 E-value=58 Score=14.52 Aligned_cols=33 Identities=27% Similarity=0.404 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHHHHHHHH-CCCCCHHHHHHHHH
Q ss_conf 8815789987787643676-48968778115531
Q gi|254780775|r 138 YSSRDEISRAIKNIFQDIE-SGSVCSHDVDSSLI 170 (243)
Q Consensus 138 Yggr~EI~~A~k~l~~~~~-~~~~~~~~I~~~~i 170 (243)
-..-.||.+|++.+.+++. .+..+|+|+..-.|
T Consensus 14 ~nt~eeI~~at~eLl~~i~~~N~~~pedv~sv~~ 47 (125)
T COG4401 14 SNTEEEILDATKELLEEIEEENITDPEDVVSVIL 47 (125)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEE
T ss_conf 7887999999999999999835898345226888
No 79
>PRK05929 consensus
Probab=21.92 E-value=66 Score=14.20 Aligned_cols=19 Identities=16% Similarity=0.480 Sum_probs=14.9
Q ss_pred HHHHCCCCCCCEEEEECCC
Q ss_conf 1352068988269998488
Q gi|254780775|r 2 VASMMSSSPPDHIGIIMDG 20 (243)
Q Consensus 2 ~~~~~~~~~P~HIaiImDG 20 (243)
+-.+...-.|.|+|+..|+
T Consensus 41 L~kll~~~~p~~~avaFD~ 59 (870)
T PRK05929 41 LNKLIKEFSPEYMVAVFDG 59 (870)
T ss_pred HHHHHHHCCCCEEEEEEEC
T ss_conf 9999986599889999879
No 80
>COG1717 RPL32 Ribosomal protein L32E [Translation, ribosomal structure and biogenesis]
Probab=21.76 E-value=66 Score=14.18 Aligned_cols=42 Identities=17% Similarity=0.128 Sum_probs=22.5
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCEEEEEECCCH--HHHHHHHHHHHH
Q ss_conf 10000235899987420254311589724881--578998778764
Q gi|254780775|r 109 LDDDILCVLKEAEDQTRLNTGLNLFIAFNYSS--RDEISRAIKNIF 152 (243)
Q Consensus 109 lp~~i~~~i~~~e~~T~~n~~~~Lnia~~Ygg--r~EI~~A~k~l~ 152 (243)
+-+-++.-++++|..+..+. ..-||-+-|. |.||+..++.+-
T Consensus 79 ~~~VlV~Nv~dLe~ldp~~~--aarIAs~VG~rKR~eI~~rA~elG 122 (133)
T COG1717 79 YEEVLVHNVKDLEKLDPETQ--AARIASTVGARKRIEILERARELG 122 (133)
T ss_pred CCEEEEECHHHHHHCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 60235516888742380467--999997641778999999999829
No 81
>TIGR03280 methan_mark_11 putative methanogenesis marker protein 11. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=21.68 E-value=44 Score=15.28 Aligned_cols=47 Identities=15% Similarity=0.259 Sum_probs=34.5
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 10000235899987420254311589724881578998778764367
Q gi|254780775|r 109 LDDDILCVLKEAEDQTRLNTGLNLFIAFNYSSRDEISRAIKNIFQDI 155 (243)
Q Consensus 109 lp~~i~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~k~l~~~~ 155 (243)
|+..+.+.-....++|.|+....+.+|+.=+-..++.+.+++++++.
T Consensus 170 l~H~ivQL~P~~P~KT~NCvss~lefAv~p~~~~~L~~~~~~~l~~~ 216 (292)
T TIGR03280 170 LDHTTVQLYPGNPNKTQNCVSVVLEFAVYPEYKEKLAREFKKLLKEY 216 (292)
T ss_pred EEEEEEEECCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 30289983489985446842799998566663899999999999861
No 82
>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. The macro domains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macro domain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward Appr-1"-p. Also included in this family are the N-terminal (or first) macro domains
Probab=21.64 E-value=67 Score=14.16 Aligned_cols=50 Identities=22% Similarity=0.357 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHH-HHHHHHHHHC
Q ss_conf 9999999999997698689997202336532301248888-9888631000
Q gi|254780775|r 40 IEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELV-KLIKSFLKKG 89 (243)
Q Consensus 40 ~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~-~l~~~~l~~~ 89 (243)
.+.+.+.++.|.+.|++.+.+=++|+.++.=|+++...+| +-+.+|++..
T Consensus 98 ~~~~~~~L~~A~~~~~~SIAfPaigtG~~g~p~~~aa~i~~~~i~~fl~~~ 148 (175)
T cd02907 98 KKAILNSLRKAEELGLRSIAIPAISSGIFGFPLERCVETIVEAVKEFLETK 148 (175)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999859978997751345668898999999999999999978
No 83
>TIGR01803 CM-like chorismate mutase related enzymes; InterPro: IPR008241 Isochorismate pyruvate-lyase (IPL; PchB) catalyses the second reaction in the pyochelin biosynthetic pathway of Pseudomonas aeruginosa, conversion of isochorismate to salicylate plus pyruvate (following the initial PchA-dependent conversion of chorismate to isochorismate) . This enzyme can also carry out the chorismate mutase (CM) reaction, but with a low catalytic efficiency. It is unlikely that PchB plays a significant role in aromatic amino acid biosynthesis. This enzyme is a stand-alone version of a chorismate mutase domain of the AroQ class. The three types of CM are AroQ class, Prokaryotic type (e.g., IPR008239 from INTERPRO and others); AroQ class, Eukaryotic type (IPR008238 from INTERPRO); and AroH class (IPR008243 from INTERPRO). They fall into two structural folds (AroQ class and AroH class) which are completely unrelated . The two types of the AroQ structural class (the Escherichia coli CM dimer and the yeast CM monomer) can be structurally superimposed, and the topology of the four-helix bundle forming the active site is conserved . The PchB-type of chorismate mutase domain, while sharing conserved residues and the predicted secondary structure with the other subgroups of the AroQ class (Prokaryotic type), has isochorismate pyruvate-lyase (IPL) as a primary catalytic activity. PchB can still use the same active site either for the IPL or for the CM reaction. It has been suggested that PchB was derived from an AroQ-class CM by a gene duplication event followed by selection for efficient IPL function in the course of the evolution of the pyochelin siderophore pathway, with only residual CM activity remaining. It can be further speculated that contemporary CMs may already possess (weak) IPL activity . For additional information please see , , ..
Probab=21.63 E-value=18 Score=17.84 Aligned_cols=29 Identities=21% Similarity=0.374 Sum_probs=24.2
Q ss_pred CCCCCCCEEEEECCCCHHHHHHCCCCHHH
Q ss_conf 06898826999848851899975998779
Q gi|254780775|r 6 MSSSPPDHIGIIMDGNGRWAAARGLPRCA 34 (243)
Q Consensus 6 ~~~~~P~HIaiImDGNrRwAk~~gl~~~~ 34 (243)
.+-+.|.=||=+..--+|||.++|+....
T Consensus 38 ~~~~~P~RvA~v~~naaR~A~e~GlDp~F 66 (82)
T TIGR01803 38 VKIDAPERVAEVKENAARYAAELGLDPDF 66 (82)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 67887346898628777667863899889
No 84
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=20.97 E-value=69 Score=14.07 Aligned_cols=52 Identities=15% Similarity=0.220 Sum_probs=34.8
Q ss_pred CCCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEE-EECCCCCCCCCHHHHHHHH
Q ss_conf 89882699984885189997599877989999999999999999769868999-7202336532301248888
Q gi|254780775|r 8 SSPPDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTI-FAFSINNWRRPVSEISELV 79 (243)
Q Consensus 8 ~~~P~HIaiImDGNrRwAk~~gl~~~~Gh~~G~~~l~~ii~~~~~~gI~~lTv-yafS~eN~~R~~~Ev~~L~ 79 (243)
-++.++|+||=.|| +-.+..+.+..+|.+.||+ |--+.+++--.++|++.-.
T Consensus 264 ~~~Gk~VvVIGGGn--------------------tAmD~artA~RlGa~~V~ivyrr~~~~MpA~~~Ei~~A~ 316 (560)
T PRK12771 264 PKLGKRVVVIGGGN--------------------TAMDAARTARRLGAEEVVIVYRRTREEMPAHAFEIDDAL 316 (560)
T ss_pred CCCCCEEEEECCCC--------------------HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHH
T ss_conf 55688689989982--------------------289999999973897699983144202899989998787
No 85
>pfam03041 Baculo_LEF-2 lef-2. The lef-2 gene (for late expression factor 2) from baculovirus is required for expression of late genes. This gene has been shown to be specifically required for expression from the vp39 and polh promoters. LEF-1 is a DNA primase and there is some evidence to suggest that LEF-2 may bind to both DNA and LEF-1.
Probab=20.91 E-value=60 Score=14.42 Aligned_cols=59 Identities=17% Similarity=0.281 Sum_probs=34.4
Q ss_pred CCCCCCCEEEECCCCC--CCCCCCHHHHHHHHHHHCCCCCCEEEEEEC--CCHHHHHHHHHHHHHH
Q ss_conf 0000283263138744--510000235899987420254311589724--8815789987787643
Q gi|254780775|r 92 SLKKNNIKVRVIGNRL--SLDDDILCVLKEAEDQTRLNTGLNLFIAFN--YSSRDEISRAIKNIFQ 153 (243)
Q Consensus 92 ~~~~~~iki~~iGd~~--~lp~~i~~~i~~~e~~T~~n~~~~Lnia~~--Yggr~EI~~A~k~l~~ 153 (243)
.+...|..|++.|-+. +++...... +.+... ...+-.-|+||. .++|++|+++.++...
T Consensus 37 ~F~~gG~~v~vsG~rL~~Ll~~~~~~~--~~~~~~-~~~ks~kNVCFk~~~~~r~~vi~~l~~~l~ 99 (164)
T pfam03041 37 VFEPGGLYVRVSGLRLYNLLKNPPTFE--ESPSVN-FSKKSKRNVCFKDCSGGRKSVIDKLRKLLN 99 (164)
T ss_pred EECCCCEEEEEECHHHHHHHHCCCCCC--HHHHHH-HHCCHHHCEEHHHHCCCHHHHHHHHHHHCC
T ss_conf 352698899997657999986699631--133222-100214243516524478999999998668
No 86
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=20.39 E-value=54 Score=14.72 Aligned_cols=45 Identities=18% Similarity=0.269 Sum_probs=24.6
Q ss_pred CCCEEEE-CCCCEECCCCCCCH-HC--CCEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 6526994-57852133656401-13--5538863687888898999999999
Q gi|254780775|r 181 DPDLIIR-TGGEKRLSDFLLWQ-VA--YSEFVFIPEYWPDFSRELFFHALNQ 228 (243)
Q Consensus 181 ~pDLlIR-TsGe~RLSnFllwq-~~--ysEl~F~~~lWPdf~~~dl~~~i~~ 228 (243)
+.=||++ .+|+ +.+|.-.. +. -+-+.-.- -.|++...-+-.+|..
T Consensus 137 ~~cLv~~~~~g~--i~GFvtlr~l~~~~a~IgLlA-V~P~~rG~GiG~~Lm~ 185 (231)
T PRK10975 137 HQCLILRDATGQ--IRGFVSLRELNDTDARIGLLA-VFPGAQGRGIGAELMQ 185 (231)
T ss_pred CEEEEEECCCCC--EEEEEEEEECCCCCCEEEEEE-ECCCCCCCCHHHHHHH
T ss_conf 568999868997--789999985279863788988-9830127988999999
No 87
>KOG0791 consensus
Probab=20.37 E-value=34 Score=16.06 Aligned_cols=39 Identities=23% Similarity=0.253 Sum_probs=21.1
Q ss_pred CCCCCCHHC--CCEEEECCCCCCCCCHH-------HHHHHHHHHHHCC
Q ss_conf 365640113--55388636878888989-------9999999986300
Q gi|254780775|r 195 SDFLLWQVA--YSEFVFIPEYWPDFSRE-------LFFHALNQYNLRD 233 (243)
Q Consensus 195 SnFllwq~~--ysEl~F~~~lWPdf~~~-------dl~~~i~~y~~r~ 233 (243)
.+|++-+.. --...|--.-||||+.- .|.+++.++-.+.
T Consensus 239 r~~~l~~~~~sr~ir~f~y~~wPd~gvp~~~~sl~~f~~~~r~~~~~~ 286 (374)
T KOG0791 239 REFRLNYAGESRKIRHFHYTAWPDFGVPSSTESLLQFVRMVRQSLDTS 286 (374)
T ss_pred EEEEEECCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 777630135652057898840335678887134899999998650557
No 88
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E; InterPro: IPR011843 This entry describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.; GO: 0051539 4 iron 4 sulfur cluster binding, 0018189 pyrroloquinoline quinone biosynthetic process.
Probab=20.24 E-value=71 Score=13.98 Aligned_cols=73 Identities=21% Similarity=0.224 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECC----CC
Q ss_conf 87798999999999999999976986899972023365323012488889888631000010000283263138----74
Q gi|254780775|r 31 PRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIG----NR 106 (243)
Q Consensus 31 ~~~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~iG----d~ 106 (243)
.++-|+|.+.+.=.++.+|..+.|+.-+-=++.=.+|..+ |..+.+|..+.=-+.++-+ ...|+| ++
T Consensus 122 ~~iaG~k~A~~~Kl~~A~~v~~~g~PltLN~V~HR~Ni~~----i~~~i~La~~L~AdrvE~A-----~~QyYGWA~~NR 192 (363)
T TIGR02109 122 DRIAGLKNAFEQKLAVARAVKAAGLPLTLNFVLHRHNIDQ----IPEIIELAIELGADRVELA-----TTQYYGWALLNR 192 (363)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHCCCCEEEEHCCCCCHHHH----HHHHHHHHHHCCCCEEEEE-----EECCHHHHHHHH
T ss_conf 6412502589999999999996189817602002420213----6789999986389848887-----402022567745
Q ss_pred C-CCCCC
Q ss_conf 4-51000
Q gi|254780775|r 107 L-SLDDD 112 (243)
Q Consensus 107 ~-~lp~~ 112 (243)
. +||..
T Consensus 193 ~aLlPt~ 199 (363)
T TIGR02109 193 AALLPTR 199 (363)
T ss_pred HHCCCCH
T ss_conf 4248988
No 89
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=20.23 E-value=71 Score=13.97 Aligned_cols=39 Identities=28% Similarity=0.514 Sum_probs=26.6
Q ss_pred CCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 98826999848851899975998779899999999999999997698689997202
Q gi|254780775|r 9 SPPDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFS 64 (243)
Q Consensus 9 ~~P~HIaiImDGNrRwAk~~gl~~~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS 64 (243)
--|.||||-.+| -|.. +..|-++++.+.+.|.. |+|..|
T Consensus 78 ~~pd~vtis~~G---------EPTL------y~~L~elI~~~k~~g~~--~tflvT 116 (296)
T COG0731 78 TEPDHVTISLSG---------EPTL------YPNLGELIEEIKKRGKK--TTFLVT 116 (296)
T ss_pred CCCCEEEEECCC---------CCCC------CCCHHHHHHHHHHCCCC--EEEEEE
T ss_conf 788779993798---------8334------64889999999860795--089993
No 90
>pfam00052 Laminin_B Laminin B (Domain IV).
Probab=20.07 E-value=72 Score=13.95 Aligned_cols=52 Identities=27% Similarity=0.392 Sum_probs=32.0
Q ss_pred CCCCEEEECCCCEECCCCCCCHHC--------CCEEEECCCCC-----CCCCHHHHHHHHHHHHHC
Q ss_conf 765269945785213365640113--------55388636878-----888989999999998630
Q gi|254780775|r 180 PDPDLIIRTGGEKRLSDFLLWQVA--------YSEFVFIPEYW-----PDFSRELFFHALNQYNLR 232 (243)
Q Consensus 180 p~pDLlIRTsGe~RLSnFllwq~~--------ysEl~F~~~lW-----Pdf~~~dl~~~i~~y~~r 232 (243)
+.||++| +|+..+|+-+..-|-. --.+-|.+..| |..+++||..+|.+-+..
T Consensus 34 ~~pdViL-~Gng~~l~~~~~~~~~~~~~~~~~~~~v~l~E~~w~~~~~~~vtR~~~m~vLanl~~i 98 (135)
T pfam00052 34 SEPDVIL-KGNGLRLSVPYRAQGNSLPSEVRVKYVVRLHENFWDFQWVPEATREDFMSVLANLTAI 98 (135)
T ss_pred CCCCEEE-ECCCEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCEE
T ss_conf 8898999-8899899998124887789987079999986466464889988999999998588669
Done!