HHsearch results for GI: 254780775 and protein with PDBid: 2d2r_A

>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase, transferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A
Probab=100.00  E-value=0  Score=610.07  Aligned_cols=233  Identities=37%  Similarity=0.680  Sum_probs=223.0

Q ss_pred             CCCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             89882699984885189997599877989999999999999999769868999720233653230124888898886310
Q gi|254780775|r    8 SSPPDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLK   87 (243)
Q Consensus         8 ~~~P~HIaiImDGNrRwAk~~gl~~~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~   87 (243)
                      .+.|+|||||||||||||+++|++..+||++|++++.+++.||.++||++|||||||+|||+||++||+.||+|+..++.
T Consensus        13 ~~~~~HiaiImDGNrRwAk~~g~~~~~Gh~~G~~~l~~i~~~c~~~gI~~lTvYafS~eN~kR~~~Ev~~L~~L~~~~l~   92 (245)
T 2d2r_A           13 DSTLKHLAIIMDGNGRWAKLKNKARAYGHKKGVKTLKDITIWCANHKLECLTLYAFSTENWKRPKSEVDFLMKMLKKYLK   92 (245)
T ss_dssp             -CCCCEEEEECCCHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTTCSEEEEECC----------CHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             89999899943586999988799778999999999999999999779988997740687768888999999999999876


Q ss_pred             HCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf             00010000283263138744510000235899987420254311589724881578998778764367648968778115
Q gi|254780775|r   88 KGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGLNLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHDVDS  167 (243)
Q Consensus        88 ~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~k~l~~~~~~~~~~~~~I~~  167 (243)
                      ...+.+.+++|+|+++||++.||.++++.+..+|+.|++|++++||||++||||+||++||+++++++..+...+ ++++
T Consensus        93 ~~~~~~~~~~iri~~iG~~~~lp~~l~~~i~~~e~~T~~n~~~~Lnia~~YgGr~EIv~Avk~i~~~~~~~~~~~-~~~~  171 (245)
T 2d2r_A           93 DERSTYLDNNIRFRAIGDLEGFSKELRDTILQLENDTRHFKDFTQVLALNYGSKNELSRAFKSLLESPPSNISLL-ESLE  171 (245)
T ss_dssp             HHHHHHHHTTCEEEEESCGGGSCHHHHHHHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHSCCTTGGGC-SCCH
T ss_pred             HHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCH-HHHH
T ss_conf             655442126749998636545773665544456764047754342245346878999999999997220124737-7665


Q ss_pred             HHHCCCCCCCCCCCCCEEEECCCCEECCCCCCCHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             53101133678776526994578521336564011355388636878888989999999998630050588465
Q gi|254780775|r  168 SLIAKYLDTSDVPDPDLIIRTGGEKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFGGLSK  241 (243)
Q Consensus       168 ~~i~~~L~~~~~p~pDLlIRTsGe~RLSnFllwq~~ysEl~F~~~lWPdf~~~dl~~~i~~y~~r~RrfG~~~~  241 (243)
                      +.+.++|++++.||||||||||||+|||||||||++||||||++++||||+..||..||.+|++|+|||||++.
T Consensus       172 ~~~~~~l~~~~~pdpDLlIRTsGe~RLSnFLlwQ~aysEl~F~~~~WPdf~~~dl~~al~~y~~r~RrfGk~~~  245 (245)
T 2d2r_A          172 NEISNRLDTRNLPEVDLLLRTGGEMRLSNFLLWQSSYAELFFTPILWPDFTPKDLENIISDFYKRVRKFGELKA  245 (245)
T ss_dssp             HHHHTTSTTTTSCCCSEEEECSSCCCCTTSSTTTTTTCEEEECCSCGGGCCHHHHHHHHHHHHHHCC-------
T ss_pred             HHHHHHCCCCCCCCCCEEEECCCCEECCCCHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             57776456689989887574599612345113211244589778888769999999999999862276899889