HHsearch results for GI: 254780775 and protein with PDBid: 2d2r_A
>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase, transferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A
Probab=100.00 E-value=0 Score=610.07 Aligned_cols=233 Identities=37% Similarity=0.680 Sum_probs=223.0
Q ss_pred CCCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 89882699984885189997599877989999999999999999769868999720233653230124888898886310
Q gi|254780775|r 8 SSPPDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLK 87 (243)
Q Consensus 8 ~~~P~HIaiImDGNrRwAk~~gl~~~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~ 87 (243)
.+.|+|||||||||||||+++|++..+||++|++++.+++.||.++||++|||||||+|||+||++||+.||+|+..++.
T Consensus 13 ~~~~~HiaiImDGNrRwAk~~g~~~~~Gh~~G~~~l~~i~~~c~~~gI~~lTvYafS~eN~kR~~~Ev~~L~~L~~~~l~ 92 (245)
T 2d2r_A 13 DSTLKHLAIIMDGNGRWAKLKNKARAYGHKKGVKTLKDITIWCANHKLECLTLYAFSTENWKRPKSEVDFLMKMLKKYLK 92 (245)
T ss_dssp -CCCCEEEEECCCHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTTCSEEEEECC----------CHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 89999899943586999988799778999999999999999999779988997740687768888999999999999876
Q ss_pred HCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 00010000283263138744510000235899987420254311589724881578998778764367648968778115
Q gi|254780775|r 88 KGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGLNLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHDVDS 167 (243)
Q Consensus 88 ~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~k~l~~~~~~~~~~~~~I~~ 167 (243)
...+.+.+++|+|+++||++.||.++++.+..+|+.|++|++++||||++||||+||++||+++++++..+...+ ++++
T Consensus 93 ~~~~~~~~~~iri~~iG~~~~lp~~l~~~i~~~e~~T~~n~~~~Lnia~~YgGr~EIv~Avk~i~~~~~~~~~~~-~~~~ 171 (245)
T 2d2r_A 93 DERSTYLDNNIRFRAIGDLEGFSKELRDTILQLENDTRHFKDFTQVLALNYGSKNELSRAFKSLLESPPSNISLL-ESLE 171 (245)
T ss_dssp HHHHHHHHTTCEEEEESCGGGSCHHHHHHHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHSCCTTGGGC-SCCH
T ss_pred HHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCH-HHHH
T ss_conf 655442126749998636545773665544456764047754342245346878999999999997220124737-7665
Q ss_pred HHHCCCCCCCCCCCCCEEEECCCCEECCCCCCCHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 53101133678776526994578521336564011355388636878888989999999998630050588465
Q gi|254780775|r 168 SLIAKYLDTSDVPDPDLIIRTGGEKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFGGLSK 241 (243)
Q Consensus 168 ~~i~~~L~~~~~p~pDLlIRTsGe~RLSnFllwq~~ysEl~F~~~lWPdf~~~dl~~~i~~y~~r~RrfG~~~~ 241 (243)
+.+.++|++++.||||||||||||+|||||||||++||||||++++||||+..||..||.+|++|+|||||++.
T Consensus 172 ~~~~~~l~~~~~pdpDLlIRTsGe~RLSnFLlwQ~aysEl~F~~~~WPdf~~~dl~~al~~y~~r~RrfGk~~~ 245 (245)
T 2d2r_A 172 NEISNRLDTRNLPEVDLLLRTGGEMRLSNFLLWQSSYAELFFTPILWPDFTPKDLENIISDFYKRVRKFGELKA 245 (245)
T ss_dssp HHHHTTSTTTTSCCCSEEEECSSCCCCTTSSTTTTTTCEEEECCSCGGGCCHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHCCCCCCCCCCEEEECCCCEECCCCHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 57776456689989887574599612345113211244589778888769999999999999862276899889