RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780775|ref|YP_003065188.1| undecaprenyl diphosphate
synthase [Candidatus Liberibacter asiaticus str. psy62]
         (243 letters)



>gnl|CDD|184843 PRK14834, PRK14834, undecaprenyl pyrophosphate synthase;
           Provisional.
          Length = 249

 Score =  322 bits (827), Expect = 5e-89
 Identities = 128/236 (54%), Positives = 170/236 (72%)

Query: 7   SSSPPDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSIN 66
           + S P H+ IIMDGNGRWA ARGLPR AGHR G+E    +V AA E+GI  LT+FAFS  
Sbjct: 11  AMSVPRHVAIIMDGNGRWAKARGLPRAAGHRAGVEALRRVVRAAGELGIGYLTLFAFSSE 70

Query: 67  NWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRL 126
           NW RP SE+S+L  L++ F+++    L +N ++VRVIG R  L+ DI  +L EAE+ TR 
Sbjct: 71  NWSRPASEVSDLFGLLRLFIRRDLAELHRNGVRVRVIGERAGLEADICALLNEAEELTRN 130

Query: 127 NTGLNLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHDVDSSLIAKYLDTSDVPDPDLII 186
           NTGLNL IAFNY SRDEI+RA++ + +++  G +    +D+  I+  LDT+D+PDPDLII
Sbjct: 131 NTGLNLVIAFNYGSRDEIARAVRRLAREVAEGRLDPASIDAETISANLDTADIPDPDLII 190

Query: 187 RTGGEKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFGGLSKK 242
           RT GE+RLS+FLLWQ AYSE +F+P +WPDF +     A+ +Y  R+RRFGGL+ K
Sbjct: 191 RTSGEQRLSNFLLWQAAYSELLFVPIHWPDFDKAALEAAIEEYARRERRFGGLAAK 246


>gnl|CDD|184840 PRK14830, PRK14830, undecaprenyl pyrophosphate synthase;
           Provisional.
          Length = 251

 Score =  314 bits (807), Expect = 1e-86
 Identities = 114/229 (49%), Positives = 147/229 (64%)

Query: 11  PDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRR 70
           P HI IIMDGNGRWA  R LPR AGH+ G++   +I  AA+E+G+K LT++AFS  NW+R
Sbjct: 23  PKHIAIIMDGNGRWAKKRMLPRIAGHKAGMDTVKKITKAASELGVKVLTLYAFSTENWKR 82

Query: 71  PVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGL 130
           P  E+  L+ L   FL K    L +NN+KV VIG+   L +  L  L++A ++T+ NTGL
Sbjct: 83  PKDEVKFLMNLPVEFLDKFVPELIENNVKVNVIGDTDRLPEHTLRALEKAIEKTKNNTGL 142

Query: 131 NLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHDVDSSLIAKYLDTSDVPDPDLIIRTGG 190
            L  A NY  R EI  A+K I +D+  G +   D+   LI+ YL T  +PDPDL+IRT G
Sbjct: 143 ILNFALNYGGRAEIVSAVKEIAKDVLDGKLNPEDITEELISNYLMTKGLPDPDLLIRTSG 202

Query: 191 EKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFGGL 239
           E RLS+FLLWQ+AYSEF F    WPDF  E    A+  Y  R RRFGG+
Sbjct: 203 ELRLSNFLLWQLAYSEFYFTDVLWPDFDEEELLKAIKDYQSRQRRFGGV 251


>gnl|CDD|184845 PRK14836, PRK14836, undecaprenyl pyrophosphate synthase;
           Provisional.
          Length = 253

 Score =  262 bits (672), Expect = 5e-71
 Identities = 98/237 (41%), Positives = 140/237 (59%)

Query: 1   MVASMMSSSPPDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTI 60
           +     + + P HI IIMDGNGRWA  RG PR  GHR G+      +    E GI+ LT+
Sbjct: 5   IQMIPANENIPRHIAIIMDGNGRWAKRRGKPRVEGHRAGVRAVRRTIEFCLEKGIEMLTL 64

Query: 61  FAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEA 120
           FAFS  NW RP  E+S L++L    L +    L +N I+VR IG+R  L   +   ++ A
Sbjct: 65  FAFSSENWLRPADEVSALMELFLKALDREVDKLHRNGIRVRFIGDRSRLSPKLQERMEYA 124

Query: 121 EDQTRLNTGLNLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHDVDSSLIAKYLDTSDVP 180
           E  T  NT L L +A +Y  R +I  A + + +++ +G +   ++D +L+A++L  +D+P
Sbjct: 125 ERLTASNTRLILSLAVSYGGRWDIVTAARALAREVAAGKLAPDEIDEALLAQHLALADLP 184

Query: 181 DPDLIIRTGGEKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFG 237
           +PDL IRT GE R+S+FLLWQ+AY+E  F    WPDF  +    AL  Y  R+RRFG
Sbjct: 185 EPDLFIRTSGELRISNFLLWQLAYTELYFTDTLWPDFDAQELQQALEDYASRERRFG 241


>gnl|CDD|129165 TIGR00055, uppS, undecaprenyl diphosphate synthase.  Alternate
           name: undecaprenyl pyrophosphate synthetase. Activity
           has been demonstrated experimentally for members of this
           family from Micrococcus luteus, E. coli, Haemophilus
           influenzae, and Streptococcus pneumoniae.
          Length = 226

 Score =  239 bits (612), Expect = 5e-64
 Identities = 93/225 (41%), Positives = 142/225 (63%)

Query: 13  HIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPV 72
           H+ IIMDGNGRWA  +G PR  GH+ G++    I+   A +G++ LT++AFS  NW+RP 
Sbjct: 2   HVAIIMDGNGRWAKKKGKPRAYGHKAGVKSLRRILRWCANLGVECLTLYAFSTENWKRPK 61

Query: 73  SEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGLNL 132
            E+  L++L +  L +    L + N+++R+IG+   L  ++   +K+AE+ T+ NT   L
Sbjct: 62  EEVDFLMELFEKKLDREVKELHRYNVRIRIIGDLSLLSKELQEKIKKAEEDTKNNTDFTL 121

Query: 133 FIAFNYSSRDEISRAIKNIFQDIESGSVCSHDVDSSLIAKYLDTSDVPDPDLIIRTGGEK 192
            IAFNY  R+EI  A+K I + ++SG +   D+D   + K+L T+++P  DL+IRT GE 
Sbjct: 122 NIAFNYGGRNEILHAVKQIAEKVKSGKLLPEDIDEETLNKHLYTANLPPVDLLIRTSGEM 181

Query: 193 RLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFG 237
           R+S+FLLWQ +Y+E  F    WPDF  + F  A+  +  R RRFG
Sbjct: 182 RISNFLLWQSSYAELYFTDILWPDFDPQDFELAILDFQFRHRRFG 226


>gnl|CDD|184842 PRK14833, PRK14833, undecaprenyl pyrophosphate synthase;
           Provisional.
          Length = 233

 Score =  233 bits (595), Expect = 4e-62
 Identities = 98/234 (41%), Positives = 144/234 (61%), Gaps = 5/234 (2%)

Query: 8   SSPPDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINN 67
            +   H+ IIMDGNGRWA  RG  R AGH+KG++   EI    A   ++ LT++AFS  N
Sbjct: 2   DNTLKHLAIIMDGNGRWAKLRGKARAAGHKKGVKTLREITIWCANHKLECLTLYAFSTEN 61

Query: 68  WRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRLN 127
           W+RP SE+  L+KL+K +LK    +  +NNI+ + IG+      ++   + + E+ TR  
Sbjct: 62  WKRPKSEVDFLMKLLKKYLKDERSTYLENNIRFKAIGDLEGFSKELRDTILQLEEDTRSF 121

Query: 128 TGLNLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHDVDSS--LIAKYLDTSDVPDPDLI 185
            G    +A NY S+DEISRA K +   +ES      +++S    I+  LDT+D+P+ DL+
Sbjct: 122 KGFTQVLALNYGSKDEISRAFKKL---LESPPSHIGELESLEEEISNCLDTADLPEVDLL 178

Query: 186 IRTGGEKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFGGL 239
           IRTGGE RLS+FLLWQ +Y+E  F P  WPDF+ +   + ++ +  R R+FGGL
Sbjct: 179 IRTGGEMRLSNFLLWQSSYAELFFTPILWPDFTPKDLENIISDFYKRVRKFGGL 232


>gnl|CDD|184846 PRK14838, PRK14838, undecaprenyl pyrophosphate synthase;
           Provisional.
          Length = 242

 Score =  232 bits (594), Expect = 5e-62
 Identities = 101/232 (43%), Positives = 146/232 (62%), Gaps = 2/232 (0%)

Query: 11  PDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRR 70
           P HI IIMDGNGRWA  RG  R  GH+ G E  + I   AA +G+K LT++ FS  NW R
Sbjct: 11  PQHIAIIMDGNGRWAKERGKERSFGHQAGAETVHIITEEAARLGVKFLTLYTFSTENWNR 70

Query: 71  PVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGL 130
           P  E++ L+ L+   +++   +  KNNI+ R+IG+   L +++   L E E+ T  NTG+
Sbjct: 71  PSDEVAALMSLLLDSIEE--ETFMKNNIRFRIIGDIAKLPEEVQERLNECEEHTAKNTGM 128

Query: 131 NLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHDVDSSLIAKYLDTSDVPDPDLIIRTGG 190
            L +A +YSSR EI+ A + I   +++G +   ++    I+++L T+ +PDPDL+IRTGG
Sbjct: 129 CLVLALSYSSRWEITEATRQIATLVQNGELNPEEITEESISEHLTTNFMPDPDLLIRTGG 188

Query: 191 EKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFGGLSKK 242
           E RLS++LLWQ AYSE  F   +WPDF  E    A+  Y  R+RRFG  S++
Sbjct: 189 EIRLSNYLLWQCAYSELYFCDTFWPDFDEEELCKAIYDYQKRERRFGKTSEQ 240


>gnl|CDD|173300 PRK14839, PRK14839, undecaprenyl pyrophosphate synthase;
           Provisional.
          Length = 239

 Score =  231 bits (590), Expect = 1e-61
 Identities = 106/239 (44%), Positives = 143/239 (59%), Gaps = 10/239 (4%)

Query: 1   MVASMMSSSPPDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTI 60
           M +S+   S   H+ IIMDGNGRWA ARGLPR AGHR G+E    +V AA ++GI  LT+
Sbjct: 1   MQSSLDRRSGL-HVAIIMDGNGRWATARGLPRLAGHRAGVEAIRRVVEAAPDLGIGTLTL 59

Query: 61  FAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEA 120
           +AFS +NWRRP +E+  L++L++++L+     L +N +++ VIG R  L D I   +  A
Sbjct: 60  YAFSSDNWRRPAAEVGGLMRLLRAYLRNETERLARNGVRLTVIGRRDRLPDGIPEAIARA 119

Query: 121 EDQTRLNTGLNLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHDVDSSLIAKYLDTSDVP 180
           E  T     L+L IA +YS+RD I  A              S +  S L+     T D  
Sbjct: 120 EAATAGGDRLHLRIAVDYSARDAILAAA----AKALGPEGLSREAFSDLL-----TGDGG 170

Query: 181 DPDLIIRTGGEKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFGGL 239
           D DL+IRTGGEKRLSDFLLW+ AY+E  F    WPDF  +    A+  ++ R+RRFGGL
Sbjct: 171 DVDLLIRTGGEKRLSDFLLWESAYAELHFTDRMWPDFGADDLAAAVADFHGRERRFGGL 229


>gnl|CDD|184841 PRK14831, PRK14831, undecaprenyl pyrophosphate synthase;
           Provisional.
          Length = 249

 Score =  228 bits (583), Expect = 1e-60
 Identities = 90/229 (39%), Positives = 139/229 (60%)

Query: 11  PDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRR 70
           P H+ +IMDGNGRWA  RGLPR  GHR+G++   +++    + GI  LT +AFS  NW R
Sbjct: 21  PKHVAVIMDGNGRWAKRRGLPRIMGHRRGVDALKDLLRCCKDWGIGALTAYAFSTENWSR 80

Query: 71  PVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGL 130
           P+ E++ L+ L +  L++    L + N+++R +G+   L   +   +  + + T+ N G+
Sbjct: 81  PLEEVNFLMTLFERVLRRELEELMEENVRIRFVGDLDPLPKSLQEEISRSTELTKNNNGI 140

Query: 131 NLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHDVDSSLIAKYLDTSDVPDPDLIIRTGG 190
           +  +  NY  R EI +A + I Q ++ G +   ++D +L    L T+ + DPDL+IRT G
Sbjct: 141 HFNVCTNYGGRQEIVQAARAIAQQVQQGELDPSEIDENLFESELYTAGIKDPDLLIRTSG 200

Query: 191 EKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFGGL 239
           E R+S+FLLWQ+AY+E       WPDF R+ F  AL  Y  R+RRFGG+
Sbjct: 201 EMRISNFLLWQLAYAEIYVTDVLWPDFDRDEFHKALLDYQSRERRFGGV 249


>gnl|CDD|173293 PRK14832, PRK14832, undecaprenyl pyrophosphate synthase;
           Provisional.
          Length = 253

 Score =  227 bits (580), Expect = 2e-60
 Identities = 94/227 (41%), Positives = 142/227 (62%)

Query: 11  PDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRR 70
           P HI +IMDGNGRWA ++GLPR AGHR+G     E++    + GIK LT +AFS  NW+R
Sbjct: 19  PQHIAVIMDGNGRWATSQGLPRIAGHRQGARTLKELLRCCKDWGIKALTAYAFSTENWQR 78

Query: 71  PVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGL 130
           P+ E+  L+ L +  L++    + +  +++  IG+  +L   +   ++ +  +T  N  +
Sbjct: 79  PIEEVDFLMLLFERLLRRELAQMHREGVRISFIGDLSALPKSLQTEMERSMTETLNNQAI 138

Query: 131 NLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHDVDSSLIAKYLDTSDVPDPDLIIRTGG 190
           +  +A NY SR+EI+RA + + + ++ G + +  V+  L+ ++L T+D P PDL+IRT G
Sbjct: 139 HFTVAVNYGSRNEITRACRQVAELVQQGKLSADAVNEQLVEQHLYTADTPPPDLLIRTSG 198

Query: 191 EKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFG 237
           E RLS+FLLWQ+AY+E  F    WPDF R  F  AL  Y  RDRRFG
Sbjct: 199 EMRLSNFLLWQMAYTEMYFTDILWPDFDRAAFHQALLSYQKRDRRFG 245


>gnl|CDD|184839 PRK14829, PRK14829, undecaprenyl pyrophosphate synthase;
           Provisional.
          Length = 243

 Score =  213 bits (545), Expect = 3e-56
 Identities = 89/228 (39%), Positives = 136/228 (59%)

Query: 11  PDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRR 70
           P HI ++MDGNGRWA  RGL R  GH+ G  V  ++VA A E G+  L+++ FS  NW+R
Sbjct: 15  PRHIAVVMDGNGRWATQRGLKRTEGHKAGEPVLFDVVAGAIEAGVPYLSLYTFSTENWKR 74

Query: 71  PVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGL 130
              E+  L+   +  + +    + +  ++VR  G R  L   ++  L+ AE+ T+ NT +
Sbjct: 75  SPDEVRFLMGFSRDVIHRRREQMDEWGVRVRWSGRRPRLWKSVIDELEAAEELTKNNTTM 134

Query: 131 NLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHDVDSSLIAKYLDTSDVPDPDLIIRTGG 190
           +L    NY  R EI+ A   I +++  G +    V   +I+ +L   D+PD DL +RT G
Sbjct: 135 DLVFCVNYGGRAEIADAAAAIAREVRDGKISGDRVTEKMISDHLYNPDMPDVDLFLRTSG 194

Query: 191 EKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFGG 238
           E+R S+FLLWQ AY+E  F+P+ +PDF R+  + A+++Y  RDRRFGG
Sbjct: 195 EQRTSNFLLWQSAYAELDFVPKLFPDFGRDDLWAAIDEYAHRDRRFGG 242


>gnl|CDD|173302 PRK14841, PRK14841, undecaprenyl pyrophosphate synthase;
           Provisional.
          Length = 233

 Score =  212 bits (542), Expect = 6e-56
 Identities = 103/229 (44%), Positives = 144/229 (62%), Gaps = 2/229 (0%)

Query: 11  PDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRR 70
           P H+ IIMDGNGRWA  RGLPR  GH++G EV +  V  + E+GIK LT F+FS  NW+R
Sbjct: 4   PQHVAIIMDGNGRWAKKRGLPRIKGHQRGAEVLHNTVKWSLELGIKYLTAFSFSTENWKR 63

Query: 71  PVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGL 130
           P  E+  L+ L    + +    L++  ++VR++G +  L + +L   +E E++T+    +
Sbjct: 64  PKEEVEFLMDLFVQMIDREMELLRRERVRVRILGRKEGLPEKVLKKWQEVEEKTKEFDRM 123

Query: 131 NLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHDVDSSLIAKYLDTSDVPDPDLIIRTGG 190
            L IAFNY  R EI  A+++I +D+  G     ++      +YL   DVPDPDLIIRT G
Sbjct: 124 TLVIAFNYGGRREILDAVESILKDVSQGK--KIELTEETFRQYLYLPDVPDPDLIIRTSG 181

Query: 191 EKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFGGL 239
           E RLS+FLLWQ AYSE  F  + WPDF++  F  A+  Y+ R+RRFGGL
Sbjct: 182 EMRLSNFLLWQSAYSELYFFKKLWPDFTKRDFLRAIESYSKRERRFGGL 230


>gnl|CDD|173301 PRK14840, PRK14840, undecaprenyl pyrophosphate synthase;
           Provisional.
          Length = 250

 Score =  210 bits (537), Expect = 2e-55
 Identities = 93/233 (39%), Positives = 131/233 (56%), Gaps = 4/233 (1%)

Query: 9   SPPDHIGIIMDGNGRW----AAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFS 64
           S P H+ IIMDGN RW             +GH  G +   +IV  A  +GI+ LT+FAFS
Sbjct: 17  SLPRHVAIIMDGNRRWYRKHEQFCQKRAISGHYYGAKSLPQIVDTALHLGIEVLTLFAFS 76

Query: 65  INNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQT 124
             N+ R   E++EL  L  S L      L +N I++R IG+   L  ++   +++A   T
Sbjct: 77  TENFSRSKEEVAELFSLFNSQLDSQLPYLHENEIRLRCIGDLSKLPQELQNNIEQASSAT 136

Query: 125 RLNTGLNLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHDVDSSLIAKYLDTSDVPDPDL 184
              + + L +A NY  +DE+ RA K + QD+ +  + S D+   LI+ YLDTS +PDPDL
Sbjct: 137 AHYSRMELVLAINYGGKDELVRAFKKLHQDLANKKISSDDISEELISSYLDTSGLPDPDL 196

Query: 185 IIRTGGEKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFG 237
           +IRTGGE R+S+FLLWQ+AY+E       WPDF+      A+  Y  R RR G
Sbjct: 197 LIRTGGEMRVSNFLLWQIAYTELYVTDVLWPDFTPNDLLEAIKTYQQRSRRGG 249


>gnl|CDD|173303 PRK14842, PRK14842, undecaprenyl pyrophosphate synthase;
           Provisional.
          Length = 241

 Score =  190 bits (484), Expect = 3e-49
 Identities = 89/236 (37%), Positives = 136/236 (57%), Gaps = 1/236 (0%)

Query: 5   MMSSSPPDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFS 64
           +  S+ P HI +IMDGNGRWA ++G  R  GHR+G    + ++ A+ E G+KN++++AFS
Sbjct: 3   LFESTIPAHIAVIMDGNGRWAESQGKKRSEGHREGANAIDRLMDASLEYGLKNISLYAFS 62

Query: 65  INNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQT 124
             NW+RP++EI  +  L+  F++    ++    I++   G+R  L   +L  +  A  +T
Sbjct: 63  TENWKRPITEIRSIFGLLVEFIETRLDTIHARGIRIHHSGSRKKLTRTVLDKIDFAMAKT 122

Query: 125 RLNTGLNLFIAFNYSSRDEISRAIKNIFQDIESGSVC-SHDVDSSLIAKYLDTSDVPDPD 183
           + N  L +    NY S DE+ RA + +F   ++  V     +      K+L TS +P  D
Sbjct: 123 KKNKNLTVNFCLNYGSHDELLRAAQEVFLARKAKKVTLEKPLKEKEFEKFLYTSPLPPVD 182

Query: 184 LIIRTGGEKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFGGL 239
           L+IRT GE+RLS+FLLWQ AY+E  F    WPDF +     +L  Y  R R+FGGL
Sbjct: 183 LLIRTAGEQRLSNFLLWQSAYAELYFTDTLWPDFDKNSLVDSLKWYETRTRKFGGL 238


>gnl|CDD|173288 PRK14827, PRK14827, undecaprenyl pyrophosphate synthase;
           Provisional.
          Length = 296

 Score =  189 bits (481), Expect = 6e-49
 Identities = 87/227 (38%), Positives = 137/227 (60%)

Query: 11  PDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRR 70
           P+H+ I+MDGNGRWA  RGL R  GH+ G  V  +I   A E+GIK L+++AFS  NW+R
Sbjct: 68  PNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFSTENWKR 127

Query: 71  PVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGL 130
              E+  L+   +  +++   +L K  +++R +G+R  L   ++  L  AE+ T+ N  +
Sbjct: 128 SPEEVRFLMGFNRDVVRRRRDNLNKMGVRIRWVGSRPRLWRSVINELAIAEEMTKSNDVI 187

Query: 131 NLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHDVDSSLIAKYLDTSDVPDPDLIIRTGG 190
            +    NY  R EI+ A + I ++  +G +    +  S IA++L   D+PD DL +RT G
Sbjct: 188 TINYCVNYGGRTEITEATREIAREAAAGRLNPERITESTIARHLQRPDIPDVDLFLRTSG 247

Query: 191 EKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFG 237
           E+R S+F+LWQ AY+E++F  + WPD+ R   + A  +Y  R+RRFG
Sbjct: 248 EQRSSNFMLWQAAYAEYIFQDKLWPDYDRRDLWAACEEYASRNRRFG 294


>gnl|CDD|173298 PRK14837, PRK14837, undecaprenyl pyrophosphate synthase;
           Provisional.
          Length = 230

 Score =  185 bits (472), Expect = 7e-48
 Identities = 96/236 (40%), Positives = 143/236 (60%), Gaps = 10/236 (4%)

Query: 5   MMSSSPPDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFS 64
           M  +S P H+GIIMDGN RWA  +GL    GH++G++   EIV  + ++GIK L+++ FS
Sbjct: 1   MNKNSLPSHVGIIMDGNRRWALKKGLSFFEGHKEGLKRAKEIVKHSLKLGIKYLSLYVFS 60

Query: 65  INNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQT 124
             NW R  SEI  L+ LI  +L   F   KKNNIK+ V G+  SL +++   +K+A   T
Sbjct: 61  TENWNRTDSEIEHLMFLIADYLSSEFNFYKKNNIKIIVSGDIESLSEEVKKSIKDAISFT 120

Query: 125 RLNTGLNLFIAFNYSSRDEISRAIKNIFQ---DIESGSVCSHDVDSSLIAKYLDTSDVPD 181
           +   GL L +A NY  R+EI RA+K       D+E+       ++ ++ +K+LD  ++PD
Sbjct: 121 KNFDGLVLNLAINYGGRNEIVRAVKKFLSSGLDLET-------LNENVFSKFLDNPELPD 173

Query: 182 PDLIIRTGGEKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFG 237
            DL+IRTGG+ R+S+FLLW++AY EF+F    WP++    +   L  +  R R FG
Sbjct: 174 LDLLIRTGGDMRISNFLLWRIAYCEFIFSNVLWPEYYVNHYSKDLECFKNRKRNFG 229


>gnl|CDD|182326 PRK10240, PRK10240, undecaprenyl pyrophosphate synthase;
           Provisional.
          Length = 229

 Score =  180 bits (457), Expect = 3e-46
 Identities = 86/221 (38%), Positives = 135/221 (61%)

Query: 18  MDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISE 77
           MDGNGRWA  +G  R  GH+ G +     V+ AA  GI+ LT++AFS  NW RP  E+S 
Sbjct: 1   MDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSA 60

Query: 78  LVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGLNLFIAFN 137
           L++L    L     SL ++N+++R+IG+    +  +   ++++E  T  NTGL L IA N
Sbjct: 61  LMELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAAN 120

Query: 138 YSSRDEISRAIKNIFQDIESGSVCSHDVDSSLIAKYLDTSDVPDPDLIIRTGGEKRLSDF 197
           Y  R +I + ++ + + ++ G++    +D  ++ +++   ++   DL+IRTGGE R+S+F
Sbjct: 121 YGGRWDIVQGVRQLAEQVQQGNLQPDQIDEEMLNQHICMHELAPVDLVIRTGGEHRISNF 180

Query: 198 LLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFGG 238
           LLWQ+AY+E  F    WPDF  + F  ALN +  R+RRFGG
Sbjct: 181 LLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRERRFGG 221


>gnl|CDD|184844 PRK14835, PRK14835, undecaprenyl pyrophosphate synthase;
           Provisional.
          Length = 275

 Score =  180 bits (457), Expect = 4e-46
 Identities = 92/236 (38%), Positives = 133/236 (56%), Gaps = 12/236 (5%)

Query: 11  PDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRR 70
           P H+G+I+DGN R+A A GL R  GH  G++   E++    E+GI  +TI+ FS +N+ R
Sbjct: 42  PRHLGLILDGNRRFARALGLQREMGHEFGVQKAYEVLEWCLELGIPTVTIWVFSTDNFSR 101

Query: 71  PVSEISELVKLIKSFLKKGF-----YSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTR 125
             +E+  L+ L   F ++         +  N ++VR IG        +L  L+E E++T 
Sbjct: 102 SPAEVETLMNL---FEREARRMAVDPRIHANRVRVRAIGRHDGFPPKVLEALEELEERTE 158

Query: 126 LNTGLNLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHDVDSSL----IAKYLDTSDVPD 181
            + G+ L IA  Y  R+EI  A+K++  +  +      +V + L    I+ +L T+ VPD
Sbjct: 159 GHEGMLLNIAVGYGGREEIVDAVKSLLLEAAATGKSPEEVAAELTPEHISAHLYTAGVPD 218

Query: 182 PDLIIRTGGEKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFG 237
           PD IIRT GE RLS FLLWQ AYSE+ F   YWP F +  F  AL  Y  R+RRFG
Sbjct: 219 PDFIIRTSGEIRLSGFLLWQSAYSEYYFCDVYWPGFRKVDFLRALRDYQGRERRFG 274


>gnl|CDD|184838 PRK14828, PRK14828, undecaprenyl pyrophosphate synthase;
           Provisional.
          Length = 256

 Score =  174 bits (442), Expect = 3e-44
 Identities = 83/233 (35%), Positives = 125/233 (53%), Gaps = 8/233 (3%)

Query: 11  PDHIGIIMDGNGRWAAARGLPRCA-GHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWR 69
           P H+GII+DGN RWA   G    + GHR G     E +    E  +  +T++  S +N  
Sbjct: 27  PGHVGIIVDGNRRWARKAGFTDVSQGHRAGAAKIGEFLGWCDETDVNVVTLYLLSTDNLG 86

Query: 70  RPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTG 129
           RP  E++ L+ +I+  +++          +VR +G+   L       LKEAE+ T  N G
Sbjct: 87  RPSEELNPLLDIIEDVVRQ---LAPDGRWRVRHVGSLDLLPAPSANRLKEAEEATVGNDG 143

Query: 130 LNLFIAFNYSSRDEISRAIKNIFQD--IESGSV--CSHDVDSSLIAKYLDTSDVPDPDLI 185
           + + +A  Y  R EI  A++++  +   +  S+   +  V    I+ +L T   PDPDL+
Sbjct: 144 IKVNVAVGYGGRQEIVDAVRSLLTEHKDKGTSIDELAESVTVDAISTHLYTGGQPDPDLV 203

Query: 186 IRTGGEKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFGG 238
           IRT GE+RLS F+LWQ A+SE+ F   YWP F +  F  AL  Y+ R+RRFG 
Sbjct: 204 IRTSGEQRLSGFMLWQSAHSEYYFCETYWPAFRKVDFLRALRDYSQRERRFGK 256


>gnl|CDD|185571 PTZ00349, PTZ00349, dehydrodolichyl diphosphate synthetase;
           Provisional.
          Length = 322

 Score = 78.1 bits (192), Expect = 2e-15
 Identities = 47/136 (34%), Positives = 79/136 (58%), Gaps = 3/136 (2%)

Query: 13  HIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPV 72
           HI IIMDGN R+A  +GL    GH  G +   +I+    ++ IK L++F+FS+ N+ R  
Sbjct: 22  HISIIMDGNRRFAKEKGLHSAIGHFMGSKALIQIIEICIKLKIKILSVFSFSLLNYNRSP 81

Query: 73  SEISELVKL-IKSFLKKGFYS--LKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTG 129
            EI  L  L +   + + F+   +K N IK+++IGN   ++D    ++ + E++T     
Sbjct: 82  EEIHFLFYLNLLILINEDFFFKFIKDNKIKIKIIGNLSYINDAYRKIIHDIEEKTENFDN 141

Query: 130 LNLFIAFNYSSRDEIS 145
           + L I F+Y+SR+E+S
Sbjct: 142 ILLNIFFSYTSRNEMS 157



 Score = 65.8 bits (160), Expect = 1e-11
 Identities = 30/61 (49%), Positives = 44/61 (72%), Gaps = 1/61 (1%)

Query: 172 KYLDTSDVPDPDLIIRTGGEKRLSDFLLWQVA-YSEFVFIPEYWPDFSRELFFHALNQYN 230
           K L TSD+P P+++IRT GEKRLSDF+L+Q++ ++E  FI EYWP F+   F + +  Y 
Sbjct: 246 KKLLTSDLPPPNILIRTSGEKRLSDFMLYQISEFTEIYFINEYWPIFNFLQFIYIILHYT 305

Query: 231 L 231
           +
Sbjct: 306 I 306


>gnl|CDD|130646 TIGR01584, citF, citrate lyase, alpha subunit.  This is a model of
           the alpha subunit of the holoenzyme citrate lyase (EC
           4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC
           4.1.3.34), and acyl carrier protein subunits in a
           stoichiometric relationship of 6:6:6. Citrate lyase is
           an enzyme which converts citrate to oxaloacetate. In
           bacteria, this reaction is involved in citrate
           fermentation. The alpha subunit catalyzes the reaction
           Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The
           seed contains an experimentally characterized member
           from Lactococcus lactis subsp. lactis. The model covers
           both Gram positive and Gram negative bacteria. It is
           quite robust with queries scoring either quite well or
           quite poorly against the model. There are currently no
           hits in between the noise cutoff and trusted cutoff.
          Length = 492

 Score = 29.8 bits (67), Expect = 0.61
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 6/56 (10%)

Query: 37  RKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYS 92
           R+G  V N ++   A++G K+LT+   S+ +   P      LV+ IK  +  G  S
Sbjct: 53  REGDYVVNMVMRIIADMGFKDLTLAPSSLTSVHDP------LVEHIKKGVVTGITS 102


>gnl|CDD|107029 PHA01351, PHA01351, putative minor structural protein.
          Length = 1070

 Score = 29.1 bits (65), Expect = 1.1
 Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 23/104 (22%)

Query: 53  VGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDD 112
           +G  +  I A    N    +  I   +  I+S  KKG+ SL +   + + IG        
Sbjct: 557 LGFDSAIISALIYENQVEQL--IKFQLNNIESLAKKGYLSLDEIKKQFKAIG-------- 606

Query: 113 ILCVLKEAEDQTRLNTGLNLFIAFNYSSRDEISRAIKNIFQDIE 156
              ++KE ED          FI F Y+   +IS  +  +   + 
Sbjct: 607 ---IIKEYEDA---------FINF-YNQELQISAFLTILKSQLR 637


>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 288

 Score = 27.8 bits (61), Expect = 2.7
 Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 18/135 (13%)

Query: 41  EVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKV 100
           ++F E V      G +N   F        +  +E  E+V L   F +K  + L    ++ 
Sbjct: 96  QLFEETVLKDVAFGPQN---FGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRR 152

Query: 101 RVIGNRLSLDDDILCVLKEAEDQTRLNTGLNLFIAFNYSSRDEISRAIKNIFQDIESGSV 160
             I   L+++ ++L VL E         GL+        +R E+ +  ++I Q  ++  +
Sbjct: 153 VAIAGILAMEPEVL-VLDEP------TAGLDP------KARIEMMQLFESIHQSGQTVVL 199

Query: 161 CSHDVDSSLIAKYLD 175
            +H +D   +A Y D
Sbjct: 200 VTHLMDD--VADYAD 212


>gnl|CDD|182059 PRK09752, PRK09752, adhesin; Provisional.
          Length = 1250

 Score = 27.3 bits (60), Expect = 3.8
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 5/47 (10%)

Query: 155 IESGSVCSHDVDSSLIAKYLDTSDVPDPDLIIRTGGEKRLSDFLLWQ 201
           ++ G+V S + D++ +    D     DP  I+  GG   LSDF  WQ
Sbjct: 466 VDDGAVLSLEGDAADLRALQD-----DPQSIVLNGGVLDLSDFSTWQ 507


>gnl|CDD|179527 PRK03011, PRK03011, butyrate kinase; Provisional.
          Length = 358

 Score = 27.0 bits (61), Expect = 4.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 215 PDFSRELFFHALNQ 228
           P+  R+  FHALNQ
Sbjct: 145 PEIERKSIFHALNQ 158


>gnl|CDD|181709 PRK09224, PRK09224, threonine dehydratase; Reviewed.
          Length = 504

 Score = 27.0 bits (61), Expect = 4.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)

Query: 142 DEISRAIKNIFQDIES 157
           DEI  AIK++F+D  S
Sbjct: 258 DEICAAIKDVFEDTRS 273


>gnl|CDD|178713 PLN03169, PLN03169, chalcone synthase family protein; Provisional.
          Length = 391

 Score = 27.0 bits (60), Expect = 5.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)

Query: 65  INNWRRPVSEISELV 79
           I  W RPVS+I+ LV
Sbjct: 118 IKEWGRPVSDITHLV 132


>gnl|CDD|182086 PRK09802, PRK09802, DNA-binding transcriptional regulator AgaR;
           Provisional.
          Length = 269

 Score = 26.7 bits (59), Expect = 5.7
 Identities = 18/64 (28%), Positives = 29/64 (45%)

Query: 72  VSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGLN 131
           V+++S L  +    ++     L+K  I VR  G  L  D     V    ED++ LNT + 
Sbjct: 34  VNDLSALYGVSTVTIRNDLAFLEKQGIAVRAYGGALICDSTTPSVEPSVEDKSALNTAMK 93

Query: 132 LFIA 135
             +A
Sbjct: 94  RSVA 97


>gnl|CDD|182952 PRK11086, PRK11086, sensory histidine kinase DcuS; Provisional.
          Length = 542

 Score = 26.8 bits (60), Expect = 5.7
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 4/50 (8%)

Query: 73  SEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEAED 122
            EI  L+  IKS +  GF   K +    R +G  L + +D    L ++ D
Sbjct: 382 EEIGSLLGKIKSPVIAGFLLGKISRA--RELGITLIISED--SQLPDSGD 427


>gnl|CDD|149338 pfam08221, HTH_9, RNA polymerase III subunit RPC82
          helix-turn-helix domain.  This family consists of
          several DNA-directed RNA polymerase III polypeptides
          which are related to the Saccharomyces cerevisiae RPC82
          protein. RNA polymerase C (III) promotes the
          transcription of tRNA and 5S RNA genes. In
          Saccharomyces cerevisiae, the enzyme is composed of 15
          subunits, ranging from 160 to about 10 kDa. This region
          is a probably DNA-binding helix-turn-helix.
          Length = 62

 Score = 26.4 bits (59), Expect = 6.4
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 10/58 (17%)

Query: 41 EVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNI 98
          E F E+VA           + +  +   R  + EI +L KL    +KK    L ++N 
Sbjct: 9  EHFGEVVAK----------VVSTLLRKGRLTLREIVKLTKLSLDQVKKSLVVLIQHNC 56


>gnl|CDD|131061 TIGR02006, IscS, cysteine desulfurase IscS.  This model represents
           IscS, one of several cysteine desulfurases from a larger
           protein family designated (misleadingly, in this case)
           class V aminotransferases. IscS is one of at least 6
           enzymes characteristic of the IscSUA-hscAB-fsx system of
           iron-sulfur cluster assembly. Scoring almost as well as
           proteobacterial sequences included in the model are
           mitochondrial cysteine desulfurases, apparently from an
           analogous system in eukaryotes. The sulfur, taken from
           cysteine, may be used in other systems as well, such as
           tRNA base modification and biosynthesis of other
           cofactors.
          Length = 402

 Score = 26.3 bits (58), Expect = 7.1
 Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 10/79 (12%)

Query: 107 LSLDDDILCVLKEAEDQTRLNTGL------NLFIAFNYSSRDEISRAIKNIFQDIESGSV 160
           L+L D +L  +K  E +  LN  L      NL ++FNY   + +  A+K++   + SGS 
Sbjct: 269 LALRDRLLNGIKSIE-EVYLNGDLEHRVPGNLNVSFNYVEGESLIMALKDL--AVSSGSA 325

Query: 161 C-SHDVDSSLIAKYLDTSD 178
           C S  ++ S + + L  +D
Sbjct: 326 CTSASLEPSYVLRALGIND 344


>gnl|CDD|171533 PRK12483, PRK12483, threonine dehydratase; Reviewed.
          Length = 521

 Score = 26.3 bits (58), Expect = 7.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 140 SRDEISRAIKNIFQDIES 157
           S DE+  AIK+I+ D  S
Sbjct: 273 STDELCAAIKDIYDDTRS 290


>gnl|CDD|173106 PRK14643, PRK14643, hypothetical protein; Provisional.
          Length = 164

 Score = 26.0 bits (57), Expect = 9.9
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 93  LKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGLNLFIAFNYSSRDEISRAIKNI 151
           L+  N+KV  I N    ++D++ +L   ED  + N  L+  I     + D +S  I   
Sbjct: 19  LEVLNLKVYEINNLKEFENDMIQIL--VEDILQANKPLDFDILI--KANDLVSNKIDQF 73


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.322    0.139    0.413 

Gapped
Lambda     K      H
   0.267   0.0761    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,144,676
Number of extensions: 270075
Number of successful extensions: 649
Number of sequences better than 10.0: 1
Number of HSP's gapped: 632
Number of HSP's successfully gapped: 48
Length of query: 243
Length of database: 5,994,473
Length adjustment: 91
Effective length of query: 152
Effective length of database: 4,028,145
Effective search space: 612278040
Effective search space used: 612278040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.3 bits)