RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780775|ref|YP_003065188.1| undecaprenyl diphosphate synthase [Candidatus Liberibacter asiaticus str. psy62] (243 letters) >gnl|CDD|184843 PRK14834, PRK14834, undecaprenyl pyrophosphate synthase; Provisional. Length = 249 Score = 322 bits (827), Expect = 5e-89 Identities = 128/236 (54%), Positives = 170/236 (72%) Query: 7 SSSPPDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSIN 66 + S P H+ IIMDGNGRWA ARGLPR AGHR G+E +V AA E+GI LT+FAFS Sbjct: 11 AMSVPRHVAIIMDGNGRWAKARGLPRAAGHRAGVEALRRVVRAAGELGIGYLTLFAFSSE 70 Query: 67 NWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRL 126 NW RP SE+S+L L++ F+++ L +N ++VRVIG R L+ DI +L EAE+ TR Sbjct: 71 NWSRPASEVSDLFGLLRLFIRRDLAELHRNGVRVRVIGERAGLEADICALLNEAEELTRN 130 Query: 127 NTGLNLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHDVDSSLIAKYLDTSDVPDPDLII 186 NTGLNL IAFNY SRDEI+RA++ + +++ G + +D+ I+ LDT+D+PDPDLII Sbjct: 131 NTGLNLVIAFNYGSRDEIARAVRRLAREVAEGRLDPASIDAETISANLDTADIPDPDLII 190 Query: 187 RTGGEKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFGGLSKK 242 RT GE+RLS+FLLWQ AYSE +F+P +WPDF + A+ +Y R+RRFGGL+ K Sbjct: 191 RTSGEQRLSNFLLWQAAYSELLFVPIHWPDFDKAALEAAIEEYARRERRFGGLAAK 246 >gnl|CDD|184840 PRK14830, PRK14830, undecaprenyl pyrophosphate synthase; Provisional. Length = 251 Score = 314 bits (807), Expect = 1e-86 Identities = 114/229 (49%), Positives = 147/229 (64%) Query: 11 PDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRR 70 P HI IIMDGNGRWA R LPR AGH+ G++ +I AA+E+G+K LT++AFS NW+R Sbjct: 23 PKHIAIIMDGNGRWAKKRMLPRIAGHKAGMDTVKKITKAASELGVKVLTLYAFSTENWKR 82 Query: 71 PVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGL 130 P E+ L+ L FL K L +NN+KV VIG+ L + L L++A ++T+ NTGL Sbjct: 83 PKDEVKFLMNLPVEFLDKFVPELIENNVKVNVIGDTDRLPEHTLRALEKAIEKTKNNTGL 142 Query: 131 NLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHDVDSSLIAKYLDTSDVPDPDLIIRTGG 190 L A NY R EI A+K I +D+ G + D+ LI+ YL T +PDPDL+IRT G Sbjct: 143 ILNFALNYGGRAEIVSAVKEIAKDVLDGKLNPEDITEELISNYLMTKGLPDPDLLIRTSG 202 Query: 191 EKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFGGL 239 E RLS+FLLWQ+AYSEF F WPDF E A+ Y R RRFGG+ Sbjct: 203 ELRLSNFLLWQLAYSEFYFTDVLWPDFDEEELLKAIKDYQSRQRRFGGV 251 >gnl|CDD|184845 PRK14836, PRK14836, undecaprenyl pyrophosphate synthase; Provisional. Length = 253 Score = 262 bits (672), Expect = 5e-71 Identities = 98/237 (41%), Positives = 140/237 (59%) Query: 1 MVASMMSSSPPDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTI 60 + + + P HI IIMDGNGRWA RG PR GHR G+ + E GI+ LT+ Sbjct: 5 IQMIPANENIPRHIAIIMDGNGRWAKRRGKPRVEGHRAGVRAVRRTIEFCLEKGIEMLTL 64 Query: 61 FAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEA 120 FAFS NW RP E+S L++L L + L +N I+VR IG+R L + ++ A Sbjct: 65 FAFSSENWLRPADEVSALMELFLKALDREVDKLHRNGIRVRFIGDRSRLSPKLQERMEYA 124 Query: 121 EDQTRLNTGLNLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHDVDSSLIAKYLDTSDVP 180 E T NT L L +A +Y R +I A + + +++ +G + ++D +L+A++L +D+P Sbjct: 125 ERLTASNTRLILSLAVSYGGRWDIVTAARALAREVAAGKLAPDEIDEALLAQHLALADLP 184 Query: 181 DPDLIIRTGGEKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFG 237 +PDL IRT GE R+S+FLLWQ+AY+E F WPDF + AL Y R+RRFG Sbjct: 185 EPDLFIRTSGELRISNFLLWQLAYTELYFTDTLWPDFDAQELQQALEDYASRERRFG 241 >gnl|CDD|129165 TIGR00055, uppS, undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae. Length = 226 Score = 239 bits (612), Expect = 5e-64 Identities = 93/225 (41%), Positives = 142/225 (63%) Query: 13 HIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPV 72 H+ IIMDGNGRWA +G PR GH+ G++ I+ A +G++ LT++AFS NW+RP Sbjct: 2 HVAIIMDGNGRWAKKKGKPRAYGHKAGVKSLRRILRWCANLGVECLTLYAFSTENWKRPK 61 Query: 73 SEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGLNL 132 E+ L++L + L + L + N+++R+IG+ L ++ +K+AE+ T+ NT L Sbjct: 62 EEVDFLMELFEKKLDREVKELHRYNVRIRIIGDLSLLSKELQEKIKKAEEDTKNNTDFTL 121 Query: 133 FIAFNYSSRDEISRAIKNIFQDIESGSVCSHDVDSSLIAKYLDTSDVPDPDLIIRTGGEK 192 IAFNY R+EI A+K I + ++SG + D+D + K+L T+++P DL+IRT GE Sbjct: 122 NIAFNYGGRNEILHAVKQIAEKVKSGKLLPEDIDEETLNKHLYTANLPPVDLLIRTSGEM 181 Query: 193 RLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFG 237 R+S+FLLWQ +Y+E F WPDF + F A+ + R RRFG Sbjct: 182 RISNFLLWQSSYAELYFTDILWPDFDPQDFELAILDFQFRHRRFG 226 >gnl|CDD|184842 PRK14833, PRK14833, undecaprenyl pyrophosphate synthase; Provisional. Length = 233 Score = 233 bits (595), Expect = 4e-62 Identities = 98/234 (41%), Positives = 144/234 (61%), Gaps = 5/234 (2%) Query: 8 SSPPDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINN 67 + H+ IIMDGNGRWA RG R AGH+KG++ EI A ++ LT++AFS N Sbjct: 2 DNTLKHLAIIMDGNGRWAKLRGKARAAGHKKGVKTLREITIWCANHKLECLTLYAFSTEN 61 Query: 68 WRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRLN 127 W+RP SE+ L+KL+K +LK + +NNI+ + IG+ ++ + + E+ TR Sbjct: 62 WKRPKSEVDFLMKLLKKYLKDERSTYLENNIRFKAIGDLEGFSKELRDTILQLEEDTRSF 121 Query: 128 TGLNLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHDVDSS--LIAKYLDTSDVPDPDLI 185 G +A NY S+DEISRA K + +ES +++S I+ LDT+D+P+ DL+ Sbjct: 122 KGFTQVLALNYGSKDEISRAFKKL---LESPPSHIGELESLEEEISNCLDTADLPEVDLL 178 Query: 186 IRTGGEKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFGGL 239 IRTGGE RLS+FLLWQ +Y+E F P WPDF+ + + ++ + R R+FGGL Sbjct: 179 IRTGGEMRLSNFLLWQSSYAELFFTPILWPDFTPKDLENIISDFYKRVRKFGGL 232 >gnl|CDD|184846 PRK14838, PRK14838, undecaprenyl pyrophosphate synthase; Provisional. Length = 242 Score = 232 bits (594), Expect = 5e-62 Identities = 101/232 (43%), Positives = 146/232 (62%), Gaps = 2/232 (0%) Query: 11 PDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRR 70 P HI IIMDGNGRWA RG R GH+ G E + I AA +G+K LT++ FS NW R Sbjct: 11 PQHIAIIMDGNGRWAKERGKERSFGHQAGAETVHIITEEAARLGVKFLTLYTFSTENWNR 70 Query: 71 PVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGL 130 P E++ L+ L+ +++ + KNNI+ R+IG+ L +++ L E E+ T NTG+ Sbjct: 71 PSDEVAALMSLLLDSIEE--ETFMKNNIRFRIIGDIAKLPEEVQERLNECEEHTAKNTGM 128 Query: 131 NLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHDVDSSLIAKYLDTSDVPDPDLIIRTGG 190 L +A +YSSR EI+ A + I +++G + ++ I+++L T+ +PDPDL+IRTGG Sbjct: 129 CLVLALSYSSRWEITEATRQIATLVQNGELNPEEITEESISEHLTTNFMPDPDLLIRTGG 188 Query: 191 EKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFGGLSKK 242 E RLS++LLWQ AYSE F +WPDF E A+ Y R+RRFG S++ Sbjct: 189 EIRLSNYLLWQCAYSELYFCDTFWPDFDEEELCKAIYDYQKRERRFGKTSEQ 240 >gnl|CDD|173300 PRK14839, PRK14839, undecaprenyl pyrophosphate synthase; Provisional. Length = 239 Score = 231 bits (590), Expect = 1e-61 Identities = 106/239 (44%), Positives = 143/239 (59%), Gaps = 10/239 (4%) Query: 1 MVASMMSSSPPDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTI 60 M +S+ S H+ IIMDGNGRWA ARGLPR AGHR G+E +V AA ++GI LT+ Sbjct: 1 MQSSLDRRSGL-HVAIIMDGNGRWATARGLPRLAGHRAGVEAIRRVVEAAPDLGIGTLTL 59 Query: 61 FAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEA 120 +AFS +NWRRP +E+ L++L++++L+ L +N +++ VIG R L D I + A Sbjct: 60 YAFSSDNWRRPAAEVGGLMRLLRAYLRNETERLARNGVRLTVIGRRDRLPDGIPEAIARA 119 Query: 121 EDQTRLNTGLNLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHDVDSSLIAKYLDTSDVP 180 E T L+L IA +YS+RD I A S + S L+ T D Sbjct: 120 EAATAGGDRLHLRIAVDYSARDAILAAA----AKALGPEGLSREAFSDLL-----TGDGG 170 Query: 181 DPDLIIRTGGEKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFGGL 239 D DL+IRTGGEKRLSDFLLW+ AY+E F WPDF + A+ ++ R+RRFGGL Sbjct: 171 DVDLLIRTGGEKRLSDFLLWESAYAELHFTDRMWPDFGADDLAAAVADFHGRERRFGGL 229 >gnl|CDD|184841 PRK14831, PRK14831, undecaprenyl pyrophosphate synthase; Provisional. Length = 249 Score = 228 bits (583), Expect = 1e-60 Identities = 90/229 (39%), Positives = 139/229 (60%) Query: 11 PDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRR 70 P H+ +IMDGNGRWA RGLPR GHR+G++ +++ + GI LT +AFS NW R Sbjct: 21 PKHVAVIMDGNGRWAKRRGLPRIMGHRRGVDALKDLLRCCKDWGIGALTAYAFSTENWSR 80 Query: 71 PVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGL 130 P+ E++ L+ L + L++ L + N+++R +G+ L + + + + T+ N G+ Sbjct: 81 PLEEVNFLMTLFERVLRRELEELMEENVRIRFVGDLDPLPKSLQEEISRSTELTKNNNGI 140 Query: 131 NLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHDVDSSLIAKYLDTSDVPDPDLIIRTGG 190 + + NY R EI +A + I Q ++ G + ++D +L L T+ + DPDL+IRT G Sbjct: 141 HFNVCTNYGGRQEIVQAARAIAQQVQQGELDPSEIDENLFESELYTAGIKDPDLLIRTSG 200 Query: 191 EKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFGGL 239 E R+S+FLLWQ+AY+E WPDF R+ F AL Y R+RRFGG+ Sbjct: 201 EMRISNFLLWQLAYAEIYVTDVLWPDFDRDEFHKALLDYQSRERRFGGV 249 >gnl|CDD|173293 PRK14832, PRK14832, undecaprenyl pyrophosphate synthase; Provisional. Length = 253 Score = 227 bits (580), Expect = 2e-60 Identities = 94/227 (41%), Positives = 142/227 (62%) Query: 11 PDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRR 70 P HI +IMDGNGRWA ++GLPR AGHR+G E++ + GIK LT +AFS NW+R Sbjct: 19 PQHIAVIMDGNGRWATSQGLPRIAGHRQGARTLKELLRCCKDWGIKALTAYAFSTENWQR 78 Query: 71 PVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGL 130 P+ E+ L+ L + L++ + + +++ IG+ +L + ++ + +T N + Sbjct: 79 PIEEVDFLMLLFERLLRRELAQMHREGVRISFIGDLSALPKSLQTEMERSMTETLNNQAI 138 Query: 131 NLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHDVDSSLIAKYLDTSDVPDPDLIIRTGG 190 + +A NY SR+EI+RA + + + ++ G + + V+ L+ ++L T+D P PDL+IRT G Sbjct: 139 HFTVAVNYGSRNEITRACRQVAELVQQGKLSADAVNEQLVEQHLYTADTPPPDLLIRTSG 198 Query: 191 EKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFG 237 E RLS+FLLWQ+AY+E F WPDF R F AL Y RDRRFG Sbjct: 199 EMRLSNFLLWQMAYTEMYFTDILWPDFDRAAFHQALLSYQKRDRRFG 245 >gnl|CDD|184839 PRK14829, PRK14829, undecaprenyl pyrophosphate synthase; Provisional. Length = 243 Score = 213 bits (545), Expect = 3e-56 Identities = 89/228 (39%), Positives = 136/228 (59%) Query: 11 PDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRR 70 P HI ++MDGNGRWA RGL R GH+ G V ++VA A E G+ L+++ FS NW+R Sbjct: 15 PRHIAVVMDGNGRWATQRGLKRTEGHKAGEPVLFDVVAGAIEAGVPYLSLYTFSTENWKR 74 Query: 71 PVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGL 130 E+ L+ + + + + + ++VR G R L ++ L+ AE+ T+ NT + Sbjct: 75 SPDEVRFLMGFSRDVIHRRREQMDEWGVRVRWSGRRPRLWKSVIDELEAAEELTKNNTTM 134 Query: 131 NLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHDVDSSLIAKYLDTSDVPDPDLIIRTGG 190 +L NY R EI+ A I +++ G + V +I+ +L D+PD DL +RT G Sbjct: 135 DLVFCVNYGGRAEIADAAAAIAREVRDGKISGDRVTEKMISDHLYNPDMPDVDLFLRTSG 194 Query: 191 EKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFGG 238 E+R S+FLLWQ AY+E F+P+ +PDF R+ + A+++Y RDRRFGG Sbjct: 195 EQRTSNFLLWQSAYAELDFVPKLFPDFGRDDLWAAIDEYAHRDRRFGG 242 >gnl|CDD|173302 PRK14841, PRK14841, undecaprenyl pyrophosphate synthase; Provisional. Length = 233 Score = 212 bits (542), Expect = 6e-56 Identities = 103/229 (44%), Positives = 144/229 (62%), Gaps = 2/229 (0%) Query: 11 PDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRR 70 P H+ IIMDGNGRWA RGLPR GH++G EV + V + E+GIK LT F+FS NW+R Sbjct: 4 PQHVAIIMDGNGRWAKKRGLPRIKGHQRGAEVLHNTVKWSLELGIKYLTAFSFSTENWKR 63 Query: 71 PVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGL 130 P E+ L+ L + + L++ ++VR++G + L + +L +E E++T+ + Sbjct: 64 PKEEVEFLMDLFVQMIDREMELLRRERVRVRILGRKEGLPEKVLKKWQEVEEKTKEFDRM 123 Query: 131 NLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHDVDSSLIAKYLDTSDVPDPDLIIRTGG 190 L IAFNY R EI A+++I +D+ G ++ +YL DVPDPDLIIRT G Sbjct: 124 TLVIAFNYGGRREILDAVESILKDVSQGK--KIELTEETFRQYLYLPDVPDPDLIIRTSG 181 Query: 191 EKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFGGL 239 E RLS+FLLWQ AYSE F + WPDF++ F A+ Y+ R+RRFGGL Sbjct: 182 EMRLSNFLLWQSAYSELYFFKKLWPDFTKRDFLRAIESYSKRERRFGGL 230 >gnl|CDD|173301 PRK14840, PRK14840, undecaprenyl pyrophosphate synthase; Provisional. Length = 250 Score = 210 bits (537), Expect = 2e-55 Identities = 93/233 (39%), Positives = 131/233 (56%), Gaps = 4/233 (1%) Query: 9 SPPDHIGIIMDGNGRW----AAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFS 64 S P H+ IIMDGN RW +GH G + +IV A +GI+ LT+FAFS Sbjct: 17 SLPRHVAIIMDGNRRWYRKHEQFCQKRAISGHYYGAKSLPQIVDTALHLGIEVLTLFAFS 76 Query: 65 INNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQT 124 N+ R E++EL L S L L +N I++R IG+ L ++ +++A T Sbjct: 77 TENFSRSKEEVAELFSLFNSQLDSQLPYLHENEIRLRCIGDLSKLPQELQNNIEQASSAT 136 Query: 125 RLNTGLNLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHDVDSSLIAKYLDTSDVPDPDL 184 + + L +A NY +DE+ RA K + QD+ + + S D+ LI+ YLDTS +PDPDL Sbjct: 137 AHYSRMELVLAINYGGKDELVRAFKKLHQDLANKKISSDDISEELISSYLDTSGLPDPDL 196 Query: 185 IIRTGGEKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFG 237 +IRTGGE R+S+FLLWQ+AY+E WPDF+ A+ Y R RR G Sbjct: 197 LIRTGGEMRVSNFLLWQIAYTELYVTDVLWPDFTPNDLLEAIKTYQQRSRRGG 249 >gnl|CDD|173303 PRK14842, PRK14842, undecaprenyl pyrophosphate synthase; Provisional. Length = 241 Score = 190 bits (484), Expect = 3e-49 Identities = 89/236 (37%), Positives = 136/236 (57%), Gaps = 1/236 (0%) Query: 5 MMSSSPPDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFS 64 + S+ P HI +IMDGNGRWA ++G R GHR+G + ++ A+ E G+KN++++AFS Sbjct: 3 LFESTIPAHIAVIMDGNGRWAESQGKKRSEGHREGANAIDRLMDASLEYGLKNISLYAFS 62 Query: 65 INNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQT 124 NW+RP++EI + L+ F++ ++ I++ G+R L +L + A +T Sbjct: 63 TENWKRPITEIRSIFGLLVEFIETRLDTIHARGIRIHHSGSRKKLTRTVLDKIDFAMAKT 122 Query: 125 RLNTGLNLFIAFNYSSRDEISRAIKNIFQDIESGSVC-SHDVDSSLIAKYLDTSDVPDPD 183 + N L + NY S DE+ RA + +F ++ V + K+L TS +P D Sbjct: 123 KKNKNLTVNFCLNYGSHDELLRAAQEVFLARKAKKVTLEKPLKEKEFEKFLYTSPLPPVD 182 Query: 184 LIIRTGGEKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFGGL 239 L+IRT GE+RLS+FLLWQ AY+E F WPDF + +L Y R R+FGGL Sbjct: 183 LLIRTAGEQRLSNFLLWQSAYAELYFTDTLWPDFDKNSLVDSLKWYETRTRKFGGL 238 >gnl|CDD|173288 PRK14827, PRK14827, undecaprenyl pyrophosphate synthase; Provisional. Length = 296 Score = 189 bits (481), Expect = 6e-49 Identities = 87/227 (38%), Positives = 137/227 (60%) Query: 11 PDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRR 70 P+H+ I+MDGNGRWA RGL R GH+ G V +I A E+GIK L+++AFS NW+R Sbjct: 68 PNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFSTENWKR 127 Query: 71 PVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGL 130 E+ L+ + +++ +L K +++R +G+R L ++ L AE+ T+ N + Sbjct: 128 SPEEVRFLMGFNRDVVRRRRDNLNKMGVRIRWVGSRPRLWRSVINELAIAEEMTKSNDVI 187 Query: 131 NLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHDVDSSLIAKYLDTSDVPDPDLIIRTGG 190 + NY R EI+ A + I ++ +G + + S IA++L D+PD DL +RT G Sbjct: 188 TINYCVNYGGRTEITEATREIAREAAAGRLNPERITESTIARHLQRPDIPDVDLFLRTSG 247 Query: 191 EKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFG 237 E+R S+F+LWQ AY+E++F + WPD+ R + A +Y R+RRFG Sbjct: 248 EQRSSNFMLWQAAYAEYIFQDKLWPDYDRRDLWAACEEYASRNRRFG 294 >gnl|CDD|173298 PRK14837, PRK14837, undecaprenyl pyrophosphate synthase; Provisional. Length = 230 Score = 185 bits (472), Expect = 7e-48 Identities = 96/236 (40%), Positives = 143/236 (60%), Gaps = 10/236 (4%) Query: 5 MMSSSPPDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFS 64 M +S P H+GIIMDGN RWA +GL GH++G++ EIV + ++GIK L+++ FS Sbjct: 1 MNKNSLPSHVGIIMDGNRRWALKKGLSFFEGHKEGLKRAKEIVKHSLKLGIKYLSLYVFS 60 Query: 65 INNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQT 124 NW R SEI L+ LI +L F KKNNIK+ V G+ SL +++ +K+A T Sbjct: 61 TENWNRTDSEIEHLMFLIADYLSSEFNFYKKNNIKIIVSGDIESLSEEVKKSIKDAISFT 120 Query: 125 RLNTGLNLFIAFNYSSRDEISRAIKNIFQ---DIESGSVCSHDVDSSLIAKYLDTSDVPD 181 + GL L +A NY R+EI RA+K D+E+ ++ ++ +K+LD ++PD Sbjct: 121 KNFDGLVLNLAINYGGRNEIVRAVKKFLSSGLDLET-------LNENVFSKFLDNPELPD 173 Query: 182 PDLIIRTGGEKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFG 237 DL+IRTGG+ R+S+FLLW++AY EF+F WP++ + L + R R FG Sbjct: 174 LDLLIRTGGDMRISNFLLWRIAYCEFIFSNVLWPEYYVNHYSKDLECFKNRKRNFG 229 >gnl|CDD|182326 PRK10240, PRK10240, undecaprenyl pyrophosphate synthase; Provisional. Length = 229 Score = 180 bits (457), Expect = 3e-46 Identities = 86/221 (38%), Positives = 135/221 (61%) Query: 18 MDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISE 77 MDGNGRWA +G R GH+ G + V+ AA GI+ LT++AFS NW RP E+S Sbjct: 1 MDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSA 60 Query: 78 LVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGLNLFIAFN 137 L++L L SL ++N+++R+IG+ + + ++++E T NTGL L IA N Sbjct: 61 LMELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAAN 120 Query: 138 YSSRDEISRAIKNIFQDIESGSVCSHDVDSSLIAKYLDTSDVPDPDLIIRTGGEKRLSDF 197 Y R +I + ++ + + ++ G++ +D ++ +++ ++ DL+IRTGGE R+S+F Sbjct: 121 YGGRWDIVQGVRQLAEQVQQGNLQPDQIDEEMLNQHICMHELAPVDLVIRTGGEHRISNF 180 Query: 198 LLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFGG 238 LLWQ+AY+E F WPDF + F ALN + R+RRFGG Sbjct: 181 LLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRERRFGG 221 >gnl|CDD|184844 PRK14835, PRK14835, undecaprenyl pyrophosphate synthase; Provisional. Length = 275 Score = 180 bits (457), Expect = 4e-46 Identities = 92/236 (38%), Positives = 133/236 (56%), Gaps = 12/236 (5%) Query: 11 PDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRR 70 P H+G+I+DGN R+A A GL R GH G++ E++ E+GI +TI+ FS +N+ R Sbjct: 42 PRHLGLILDGNRRFARALGLQREMGHEFGVQKAYEVLEWCLELGIPTVTIWVFSTDNFSR 101 Query: 71 PVSEISELVKLIKSFLKKGF-----YSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTR 125 +E+ L+ L F ++ + N ++VR IG +L L+E E++T Sbjct: 102 SPAEVETLMNL---FEREARRMAVDPRIHANRVRVRAIGRHDGFPPKVLEALEELEERTE 158 Query: 126 LNTGLNLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHDVDSSL----IAKYLDTSDVPD 181 + G+ L IA Y R+EI A+K++ + + +V + L I+ +L T+ VPD Sbjct: 159 GHEGMLLNIAVGYGGREEIVDAVKSLLLEAAATGKSPEEVAAELTPEHISAHLYTAGVPD 218 Query: 182 PDLIIRTGGEKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFG 237 PD IIRT GE RLS FLLWQ AYSE+ F YWP F + F AL Y R+RRFG Sbjct: 219 PDFIIRTSGEIRLSGFLLWQSAYSEYYFCDVYWPGFRKVDFLRALRDYQGRERRFG 274 >gnl|CDD|184838 PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional. Length = 256 Score = 174 bits (442), Expect = 3e-44 Identities = 83/233 (35%), Positives = 125/233 (53%), Gaps = 8/233 (3%) Query: 11 PDHIGIIMDGNGRWAAARGLPRCA-GHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWR 69 P H+GII+DGN RWA G + GHR G E + E + +T++ S +N Sbjct: 27 PGHVGIIVDGNRRWARKAGFTDVSQGHRAGAAKIGEFLGWCDETDVNVVTLYLLSTDNLG 86 Query: 70 RPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTG 129 RP E++ L+ +I+ +++ +VR +G+ L LKEAE+ T N G Sbjct: 87 RPSEELNPLLDIIEDVVRQ---LAPDGRWRVRHVGSLDLLPAPSANRLKEAEEATVGNDG 143 Query: 130 LNLFIAFNYSSRDEISRAIKNIFQD--IESGSV--CSHDVDSSLIAKYLDTSDVPDPDLI 185 + + +A Y R EI A++++ + + S+ + V I+ +L T PDPDL+ Sbjct: 144 IKVNVAVGYGGRQEIVDAVRSLLTEHKDKGTSIDELAESVTVDAISTHLYTGGQPDPDLV 203 Query: 186 IRTGGEKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFGG 238 IRT GE+RLS F+LWQ A+SE+ F YWP F + F AL Y+ R+RRFG Sbjct: 204 IRTSGEQRLSGFMLWQSAHSEYYFCETYWPAFRKVDFLRALRDYSQRERRFGK 256 >gnl|CDD|185571 PTZ00349, PTZ00349, dehydrodolichyl diphosphate synthetase; Provisional. Length = 322 Score = 78.1 bits (192), Expect = 2e-15 Identities = 47/136 (34%), Positives = 79/136 (58%), Gaps = 3/136 (2%) Query: 13 HIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPV 72 HI IIMDGN R+A +GL GH G + +I+ ++ IK L++F+FS+ N+ R Sbjct: 22 HISIIMDGNRRFAKEKGLHSAIGHFMGSKALIQIIEICIKLKIKILSVFSFSLLNYNRSP 81 Query: 73 SEISELVKL-IKSFLKKGFYS--LKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTG 129 EI L L + + + F+ +K N IK+++IGN ++D ++ + E++T Sbjct: 82 EEIHFLFYLNLLILINEDFFFKFIKDNKIKIKIIGNLSYINDAYRKIIHDIEEKTENFDN 141 Query: 130 LNLFIAFNYSSRDEIS 145 + L I F+Y+SR+E+S Sbjct: 142 ILLNIFFSYTSRNEMS 157 Score = 65.8 bits (160), Expect = 1e-11 Identities = 30/61 (49%), Positives = 44/61 (72%), Gaps = 1/61 (1%) Query: 172 KYLDTSDVPDPDLIIRTGGEKRLSDFLLWQVA-YSEFVFIPEYWPDFSRELFFHALNQYN 230 K L TSD+P P+++IRT GEKRLSDF+L+Q++ ++E FI EYWP F+ F + + Y Sbjct: 246 KKLLTSDLPPPNILIRTSGEKRLSDFMLYQISEFTEIYFINEYWPIFNFLQFIYIILHYT 305 Query: 231 L 231 + Sbjct: 306 I 306 >gnl|CDD|130646 TIGR01584, citF, citrate lyase, alpha subunit. This is a model of the alpha subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The seed contains an experimentally characterized member from Lactococcus lactis subsp. lactis. The model covers both Gram positive and Gram negative bacteria. It is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in between the noise cutoff and trusted cutoff. Length = 492 Score = 29.8 bits (67), Expect = 0.61 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 6/56 (10%) Query: 37 RKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYS 92 R+G V N ++ A++G K+LT+ S+ + P LV+ IK + G S Sbjct: 53 REGDYVVNMVMRIIADMGFKDLTLAPSSLTSVHDP------LVEHIKKGVVTGITS 102 >gnl|CDD|107029 PHA01351, PHA01351, putative minor structural protein. Length = 1070 Score = 29.1 bits (65), Expect = 1.1 Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 23/104 (22%) Query: 53 VGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDD 112 +G + I A N + I + I+S KKG+ SL + + + IG Sbjct: 557 LGFDSAIISALIYENQVEQL--IKFQLNNIESLAKKGYLSLDEIKKQFKAIG-------- 606 Query: 113 ILCVLKEAEDQTRLNTGLNLFIAFNYSSRDEISRAIKNIFQDIE 156 ++KE ED FI F Y+ +IS + + + Sbjct: 607 ---IIKEYEDA---------FINF-YNQELQISAFLTILKSQLR 637 >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 288 Score = 27.8 bits (61), Expect = 2.7 Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 18/135 (13%) Query: 41 EVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKV 100 ++F E V G +N F + +E E+V L F +K + L ++ Sbjct: 96 QLFEETVLKDVAFGPQN---FGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRR 152 Query: 101 RVIGNRLSLDDDILCVLKEAEDQTRLNTGLNLFIAFNYSSRDEISRAIKNIFQDIESGSV 160 I L+++ ++L VL E GL+ +R E+ + ++I Q ++ + Sbjct: 153 VAIAGILAMEPEVL-VLDEP------TAGLDP------KARIEMMQLFESIHQSGQTVVL 199 Query: 161 CSHDVDSSLIAKYLD 175 +H +D +A Y D Sbjct: 200 VTHLMDD--VADYAD 212 >gnl|CDD|182059 PRK09752, PRK09752, adhesin; Provisional. Length = 1250 Score = 27.3 bits (60), Expect = 3.8 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Query: 155 IESGSVCSHDVDSSLIAKYLDTSDVPDPDLIIRTGGEKRLSDFLLWQ 201 ++ G+V S + D++ + D DP I+ GG LSDF WQ Sbjct: 466 VDDGAVLSLEGDAADLRALQD-----DPQSIVLNGGVLDLSDFSTWQ 507 >gnl|CDD|179527 PRK03011, PRK03011, butyrate kinase; Provisional. Length = 358 Score = 27.0 bits (61), Expect = 4.1 Identities = 8/14 (57%), Positives = 10/14 (71%) Query: 215 PDFSRELFFHALNQ 228 P+ R+ FHALNQ Sbjct: 145 PEIERKSIFHALNQ 158 >gnl|CDD|181709 PRK09224, PRK09224, threonine dehydratase; Reviewed. Length = 504 Score = 27.0 bits (61), Expect = 4.9 Identities = 9/16 (56%), Positives = 12/16 (75%) Query: 142 DEISRAIKNIFQDIES 157 DEI AIK++F+D S Sbjct: 258 DEICAAIKDVFEDTRS 273 >gnl|CDD|178713 PLN03169, PLN03169, chalcone synthase family protein; Provisional. Length = 391 Score = 27.0 bits (60), Expect = 5.2 Identities = 9/15 (60%), Positives = 11/15 (73%) Query: 65 INNWRRPVSEISELV 79 I W RPVS+I+ LV Sbjct: 118 IKEWGRPVSDITHLV 132 >gnl|CDD|182086 PRK09802, PRK09802, DNA-binding transcriptional regulator AgaR; Provisional. Length = 269 Score = 26.7 bits (59), Expect = 5.7 Identities = 18/64 (28%), Positives = 29/64 (45%) Query: 72 VSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGLN 131 V+++S L + ++ L+K I VR G L D V ED++ LNT + Sbjct: 34 VNDLSALYGVSTVTIRNDLAFLEKQGIAVRAYGGALICDSTTPSVEPSVEDKSALNTAMK 93 Query: 132 LFIA 135 +A Sbjct: 94 RSVA 97 >gnl|CDD|182952 PRK11086, PRK11086, sensory histidine kinase DcuS; Provisional. Length = 542 Score = 26.8 bits (60), Expect = 5.7 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 4/50 (8%) Query: 73 SEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEAED 122 EI L+ IKS + GF K + R +G L + +D L ++ D Sbjct: 382 EEIGSLLGKIKSPVIAGFLLGKISRA--RELGITLIISED--SQLPDSGD 427 >gnl|CDD|149338 pfam08221, HTH_9, RNA polymerase III subunit RPC82 helix-turn-helix domain. This family consists of several DNA-directed RNA polymerase III polypeptides which are related to the Saccharomyces cerevisiae RPC82 protein. RNA polymerase C (III) promotes the transcription of tRNA and 5S RNA genes. In Saccharomyces cerevisiae, the enzyme is composed of 15 subunits, ranging from 160 to about 10 kDa. This region is a probably DNA-binding helix-turn-helix. Length = 62 Score = 26.4 bits (59), Expect = 6.4 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 10/58 (17%) Query: 41 EVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNI 98 E F E+VA + + + R + EI +L KL +KK L ++N Sbjct: 9 EHFGEVVAK----------VVSTLLRKGRLTLREIVKLTKLSLDQVKKSLVVLIQHNC 56 >gnl|CDD|131061 TIGR02006, IscS, cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. Length = 402 Score = 26.3 bits (58), Expect = 7.1 Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 10/79 (12%) Query: 107 LSLDDDILCVLKEAEDQTRLNTGL------NLFIAFNYSSRDEISRAIKNIFQDIESGSV 160 L+L D +L +K E + LN L NL ++FNY + + A+K++ + SGS Sbjct: 269 LALRDRLLNGIKSIE-EVYLNGDLEHRVPGNLNVSFNYVEGESLIMALKDL--AVSSGSA 325 Query: 161 C-SHDVDSSLIAKYLDTSD 178 C S ++ S + + L +D Sbjct: 326 CTSASLEPSYVLRALGIND 344 >gnl|CDD|171533 PRK12483, PRK12483, threonine dehydratase; Reviewed. Length = 521 Score = 26.3 bits (58), Expect = 7.8 Identities = 9/18 (50%), Positives = 12/18 (66%) Query: 140 SRDEISRAIKNIFQDIES 157 S DE+ AIK+I+ D S Sbjct: 273 STDELCAAIKDIYDDTRS 290 >gnl|CDD|173106 PRK14643, PRK14643, hypothetical protein; Provisional. Length = 164 Score = 26.0 bits (57), Expect = 9.9 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 4/59 (6%) Query: 93 LKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGLNLFIAFNYSSRDEISRAIKNI 151 L+ N+KV I N ++D++ +L ED + N L+ I + D +S I Sbjct: 19 LEVLNLKVYEINNLKEFENDMIQIL--VEDILQANKPLDFDILI--KANDLVSNKIDQF 73 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.322 0.139 0.413 Gapped Lambda K H 0.267 0.0761 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 4,144,676 Number of extensions: 270075 Number of successful extensions: 649 Number of sequences better than 10.0: 1 Number of HSP's gapped: 632 Number of HSP's successfully gapped: 48 Length of query: 243 Length of database: 5,994,473 Length adjustment: 91 Effective length of query: 152 Effective length of database: 4,028,145 Effective search space: 612278040 Effective search space used: 612278040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 56 (25.3 bits)