RPSBLAST alignment of GI: 254780775 and protein with PDBid: 2d2r
>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A Length = 245
Score = 213 bits (543), Expect = 3e-56
Identities = 88/245 (35%), Positives = 140/245 (57%), Gaps = 10/245 (4%)
Query: 5 MMSS---------SPPDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGI 55
M+S+ S H+ IIMDGNGRWA + R GH+KG++ +I A +
Sbjct: 1 MLSATQPLSEKLDSTLKHLAIIMDGNGRWAKLKNKARAYGHKKGVKTLKDITIWCANHKL 60
Query: 56 KNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILC 115
+ LT++AFS NW+RP SE+ L+K++K +LK + NNI+ R IG+ ++
Sbjct: 61 ECLTLYAFSTENWKRPKSEVDFLMKMLKKYLKDERSTYLDNNIRFRAIGDLEGFSKELRD 120
Query: 116 VLKEAEDQTRLNTGLNLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHDVDSSLIAKYLD 175
+ + E+ TR +A NY S++E+SRA K++ + S +++ + LD
Sbjct: 121 TILQLENDTRHFKDFTQVLALNYGSKNELSRAFKSLLESPPSNISLLESLENEIS-NRLD 179
Query: 176 TSDVPDPDLIIRTGGEKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRR 235
T ++P+ DL++RTGGE RLS+FLLWQ +Y+E F P WPDF+ + + ++ + R R+
Sbjct: 180 TRNLPEVDLLLRTGGEMRLSNFLLWQSSYAELFFTPILWPDFTPKDLENIISDFYKRVRK 239
Query: 236 FGGLS 240
FG L
Sbjct: 240 FGELK 244