RPSBLAST alignment of GI: 254780775 and protein with PDBid: 2d2r

>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A Length = 245
 Score =  213 bits (543), Expect = 3e-56
 Identities = 88/245 (35%), Positives = 140/245 (57%), Gaps = 10/245 (4%)

Query: 5   MMSS---------SPPDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGI 55
           M+S+         S   H+ IIMDGNGRWA  +   R  GH+KG++   +I    A   +
Sbjct: 1   MLSATQPLSEKLDSTLKHLAIIMDGNGRWAKLKNKARAYGHKKGVKTLKDITIWCANHKL 60

Query: 56  KNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILC 115
           + LT++AFS  NW+RP SE+  L+K++K +LK    +   NNI+ R IG+      ++  
Sbjct: 61  ECLTLYAFSTENWKRPKSEVDFLMKMLKKYLKDERSTYLDNNIRFRAIGDLEGFSKELRD 120

Query: 116 VLKEAEDQTRLNTGLNLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHDVDSSLIAKYLD 175
            + + E+ TR        +A NY S++E+SRA K++ +   S       +++ +    LD
Sbjct: 121 TILQLENDTRHFKDFTQVLALNYGSKNELSRAFKSLLESPPSNISLLESLENEIS-NRLD 179

Query: 176 TSDVPDPDLIIRTGGEKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRR 235
           T ++P+ DL++RTGGE RLS+FLLWQ +Y+E  F P  WPDF+ +   + ++ +  R R+
Sbjct: 180 TRNLPEVDLLLRTGGEMRLSNFLLWQSSYAELFFTPILWPDFTPKDLENIISDFYKRVRK 239

Query: 236 FGGLS 240
           FG L 
Sbjct: 240 FGELK 244