BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780775|ref|YP_003065188.1| undecaprenyl diphosphate
synthase [Candidatus Liberibacter asiaticus str. psy62]
         (243 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780775|ref|YP_003065188.1| undecaprenyl diphosphate synthase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 243

 Score =  498 bits (1281), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 243/243 (100%), Positives = 243/243 (100%)

Query: 1   MVASMMSSSPPDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTI 60
           MVASMMSSSPPDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTI
Sbjct: 1   MVASMMSSSPPDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTI 60

Query: 61  FAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEA 120
           FAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEA
Sbjct: 61  FAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEA 120

Query: 121 EDQTRLNTGLNLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHDVDSSLIAKYLDTSDVP 180
           EDQTRLNTGLNLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHDVDSSLIAKYLDTSDVP
Sbjct: 121 EDQTRLNTGLNLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHDVDSSLIAKYLDTSDVP 180

Query: 181 DPDLIIRTGGEKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFGGLS 240
           DPDLIIRTGGEKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFGGLS
Sbjct: 181 DPDLIIRTGGEKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFGGLS 240

Query: 241 KKG 243
           KKG
Sbjct: 241 KKG 243


>gi|254780454|ref|YP_003064867.1| DNA polymerase III subunit beta [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 385

 Score = 25.0 bits (53), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 10/62 (16%)

Query: 100 VRVIGNRLSLDDDILCVLKEAEDQTRLNTGLNLF-------IAFNYSSRDEISRAIKNIF 152
           VR+   +LSL  D LC+  +  D  +    +N++       I FNY    EI   I NI 
Sbjct: 281 VRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI---IDNIS 337

Query: 153 QD 154
            D
Sbjct: 338 SD 339


>gi|254780952|ref|YP_003065365.1| DNA helicase II [Candidatus Liberibacter asiaticus str. psy62]
          Length = 685

 Score = 23.1 bits (48), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 10/31 (32%), Positives = 19/31 (61%)

Query: 141 RDEISRAIKNIFQDIESGSVCSHDVDSSLIA 171
           R +I ++++N  +DI   + CS  +D + IA
Sbjct: 476 RPQIRQSLQNFVKDIRRWNNCSKKMDPAPIA 506


>gi|254780971|ref|YP_003065384.1| phosphoribosylformylglycinamidine synthase subunit I [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 219

 Score = 23.1 bits (48), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 165 VDSSLIAKYLDTSDVPDPDLIIRTGG 190
           +  S I  +   +D+PD DLI+  GG
Sbjct: 25  IGQSPILVWQSDTDIPDVDLIVIPGG 50


>gi|254780486|ref|YP_003064899.1| 8-amino-7-oxononanoate synthase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 381

 Score = 22.3 bits (46), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 3/37 (8%)

Query: 34  AGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRR 70
           A  R+GI   N   A A  +   N+  FA +IN WR+
Sbjct: 125 ASIREGI---NSGKAQAIAIPHNNINSFAENINKWRK 158


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.322    0.139    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 159,356
Number of Sequences: 1233
Number of extensions: 6610
Number of successful extensions: 20
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 8
length of query: 243
length of database: 328,796
effective HSP length: 72
effective length of query: 171
effective length of database: 240,020
effective search space: 41043420
effective search space used: 41043420
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 37 (18.9 bits)