BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780775|ref|YP_003065188.1| undecaprenyl diphosphate
synthase [Candidatus Liberibacter asiaticus str. psy62]
(243 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780775|ref|YP_003065188.1| undecaprenyl diphosphate synthase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 243
Score = 498 bits (1281), Expect = e-143, Method: Compositional matrix adjust.
Identities = 243/243 (100%), Positives = 243/243 (100%)
Query: 1 MVASMMSSSPPDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTI 60
MVASMMSSSPPDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTI
Sbjct: 1 MVASMMSSSPPDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTI 60
Query: 61 FAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEA 120
FAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEA
Sbjct: 61 FAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEA 120
Query: 121 EDQTRLNTGLNLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHDVDSSLIAKYLDTSDVP 180
EDQTRLNTGLNLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHDVDSSLIAKYLDTSDVP
Sbjct: 121 EDQTRLNTGLNLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHDVDSSLIAKYLDTSDVP 180
Query: 181 DPDLIIRTGGEKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFGGLS 240
DPDLIIRTGGEKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFGGLS
Sbjct: 181 DPDLIIRTGGEKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFGGLS 240
Query: 241 KKG 243
KKG
Sbjct: 241 KKG 243
>gi|254780454|ref|YP_003064867.1| DNA polymerase III subunit beta [Candidatus Liberibacter asiaticus
str. psy62]
Length = 385
Score = 25.0 bits (53), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 10/62 (16%)
Query: 100 VRVIGNRLSLDDDILCVLKEAEDQTRLNTGLNLF-------IAFNYSSRDEISRAIKNIF 152
VR+ +LSL D LC+ + D + +N++ I FNY EI I NI
Sbjct: 281 VRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI---IDNIS 337
Query: 153 QD 154
D
Sbjct: 338 SD 339
>gi|254780952|ref|YP_003065365.1| DNA helicase II [Candidatus Liberibacter asiaticus str. psy62]
Length = 685
Score = 23.1 bits (48), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 141 RDEISRAIKNIFQDIESGSVCSHDVDSSLIA 171
R +I ++++N +DI + CS +D + IA
Sbjct: 476 RPQIRQSLQNFVKDIRRWNNCSKKMDPAPIA 506
>gi|254780971|ref|YP_003065384.1| phosphoribosylformylglycinamidine synthase subunit I [Candidatus
Liberibacter asiaticus str. psy62]
Length = 219
Score = 23.1 bits (48), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 165 VDSSLIAKYLDTSDVPDPDLIIRTGG 190
+ S I + +D+PD DLI+ GG
Sbjct: 25 IGQSPILVWQSDTDIPDVDLIVIPGG 50
>gi|254780486|ref|YP_003064899.1| 8-amino-7-oxononanoate synthase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 381
Score = 22.3 bits (46), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 34 AGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRR 70
A R+GI N A A + N+ FA +IN WR+
Sbjct: 125 ASIREGI---NSGKAQAIAIPHNNINSFAENINKWRK 158
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.322 0.139 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 159,356
Number of Sequences: 1233
Number of extensions: 6610
Number of successful extensions: 20
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 8
length of query: 243
length of database: 328,796
effective HSP length: 72
effective length of query: 171
effective length of database: 240,020
effective search space: 41043420
effective search space used: 41043420
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 37 (18.9 bits)