BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780775|ref|YP_003065188.1| undecaprenyl diphosphate synthase [Candidatus Liberibacter asiaticus str. psy62] (243 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780775|ref|YP_003065188.1| undecaprenyl diphosphate synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 243 Score = 498 bits (1281), Expect = e-143, Method: Compositional matrix adjust. Identities = 243/243 (100%), Positives = 243/243 (100%) Query: 1 MVASMMSSSPPDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTI 60 MVASMMSSSPPDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTI Sbjct: 1 MVASMMSSSPPDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTI 60 Query: 61 FAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEA 120 FAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEA Sbjct: 61 FAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEA 120 Query: 121 EDQTRLNTGLNLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHDVDSSLIAKYLDTSDVP 180 EDQTRLNTGLNLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHDVDSSLIAKYLDTSDVP Sbjct: 121 EDQTRLNTGLNLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHDVDSSLIAKYLDTSDVP 180 Query: 181 DPDLIIRTGGEKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFGGLS 240 DPDLIIRTGGEKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFGGLS Sbjct: 181 DPDLIIRTGGEKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFGGLS 240 Query: 241 KKG 243 KKG Sbjct: 241 KKG 243 >gi|254780454|ref|YP_003064867.1| DNA polymerase III subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 385 Score = 25.0 bits (53), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 10/62 (16%) Query: 100 VRVIGNRLSLDDDILCVLKEAEDQTRLNTGLNLF-------IAFNYSSRDEISRAIKNIF 152 VR+ +LSL D LC+ + D + +N++ I FNY EI I NI Sbjct: 281 VRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI---IDNIS 337 Query: 153 QD 154 D Sbjct: 338 SD 339 >gi|254780952|ref|YP_003065365.1| DNA helicase II [Candidatus Liberibacter asiaticus str. psy62] Length = 685 Score = 23.1 bits (48), Expect = 4.1, Method: Compositional matrix adjust. Identities = 10/31 (32%), Positives = 19/31 (61%) Query: 141 RDEISRAIKNIFQDIESGSVCSHDVDSSLIA 171 R +I ++++N +DI + CS +D + IA Sbjct: 476 RPQIRQSLQNFVKDIRRWNNCSKKMDPAPIA 506 >gi|254780971|ref|YP_003065384.1| phosphoribosylformylglycinamidine synthase subunit I [Candidatus Liberibacter asiaticus str. psy62] Length = 219 Score = 23.1 bits (48), Expect = 5.1, Method: Compositional matrix adjust. Identities = 10/26 (38%), Positives = 15/26 (57%) Query: 165 VDSSLIAKYLDTSDVPDPDLIIRTGG 190 + S I + +D+PD DLI+ GG Sbjct: 25 IGQSPILVWQSDTDIPDVDLIVIPGG 50 >gi|254780486|ref|YP_003064899.1| 8-amino-7-oxononanoate synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 381 Score = 22.3 bits (46), Expect = 8.8, Method: Compositional matrix adjust. Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 3/37 (8%) Query: 34 AGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRR 70 A R+GI N A A + N+ FA +IN WR+ Sbjct: 125 ASIREGI---NSGKAQAIAIPHNNINSFAENINKWRK 158 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.322 0.139 0.413 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 159,356 Number of Sequences: 1233 Number of extensions: 6610 Number of successful extensions: 20 Number of sequences better than 100.0: 8 Number of HSP's better than 100.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 13 Number of HSP's gapped (non-prelim): 8 length of query: 243 length of database: 328,796 effective HSP length: 72 effective length of query: 171 effective length of database: 240,020 effective search space: 41043420 effective search space used: 41043420 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 37 (18.9 bits)