HHsearch alignment for GI: 254780776 and conserved domain: TIGR00496

>TIGR00496 frr ribosome recycling factor; InterPro: IPR002661 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth . Thus ribosomes are 'recycled' and ready for another round of protein synthesis.; GO: 0006412 translation.
Probab=100.00  E-value=0  Score=433.94  Aligned_cols=176  Identities=47%  Similarity=0.751  Sum_probs=174.2

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCHHHHCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECC-HHHHHHHHHHHHCCCCC
Q ss_conf             99999999999999753138888967824507885586423998765120578389899659-67899999996317889
Q gi|254780776|r   11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD-KEMVASVERGIHESNLG   89 (186)
Q Consensus        11 ~~~m~~~i~~l~~el~~irtGrasp~lld~i~V~~~g~~~pL~~lA~Is~~~~~~l~I~~~D-~~~ik~I~kAI~~s~l~   89 (186)
T Consensus         1 k~~M~K~~~al~~~~~tiRTGR~~p~llD~i~VeYYG~~TPL~qLa~i~~~dar~l~I~PfD~k~~~~~IE~aI~~adLG   80 (177)
T TIGR00496         1 KEKMDKSIQALKRELSTIRTGRANPSLLDRILVEYYGARTPLNQLASITVPDARTLVIKPFDVKSLINAIEKAILRADLG   80 (177)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCHHHCCEEEEECCCCCHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf             91567999998645644202467800017104651588203452140101898567763022225306899999860688


Q ss_pred             CCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             98454773478861555689999999999998889999999999999999998753589997899888999999999999
Q gi|254780776|r   90 LNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTI  169 (186)
Q Consensus        90 l~p~~dg~~I~i~iP~lT~E~R~~lvK~~k~~~E~~K~~iR~iR~~~~~~ikk~~k~~~iseD~~~~~~~~iq~lt~~~~  169 (186)
T Consensus        81 l~P~~DG~~IR~~~PplT~ErRke~~K~aKk~~E~~kvavRNvRrDand~vKkleKd~eisED~~~~~~e~iQK~TD~yi  160 (177)
T TIGR00496        81 LNPNNDGEVIRINFPPLTEERRKELVKVAKKIAEQAKVAVRNVRRDANDKVKKLEKDKEISEDEERKLQEEIQKITDEYI  160 (177)
T ss_pred             CCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHEEEEEEEHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             77778876210258898746678778887643210133552002647889998524788880045655778742648888


Q ss_pred             HHHHHHHHHHHHHHHCC
Q ss_conf             99999999999887449
Q gi|254780776|r  170 KNIDSFFEEKKKEIMHF  186 (186)
Q Consensus       170 ~~id~~~~~Kekell~~  186 (186)
T Consensus       161 kkid~~~~~KE~ei~~v  177 (177)
T TIGR00496       161 KKIDEILKDKEKEILEV  177 (177)
T ss_pred             HHHHHHHHHHHHHHHCC
T ss_conf             99999999889987229