HHsearch alignment for GI: 254780776 and conserved domain: cd00520
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=100.00 E-value=0 Score=391.39 Aligned_cols=178 Identities=44% Similarity=0.734 Sum_probs=176.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCC
Q ss_conf 89999999999999999975313888896782450788558642399876512057838989965967899999996317
Q gi|254780776|r 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHES 86 (186)
Q Consensus 7 l~~~~~~m~~~i~~l~~el~~irtGrasp~lld~i~V~~~g~~~pL~~lA~Is~~~~~~l~I~~~D~~~ik~I~kAI~~s 86 (186)
T Consensus 2 l~~~~~~m~k~i~~l~~~~~~irtGrasp~lld~i~V~~yg~~~pL~~lA~Is~~~~~~l~I~~~D~~~v~~I~kAI~~s 81 (179)
T cd00520 2 LKEAKEKMEKSLEALKEELNKIRTGRANPALLDSITVEYYGAPTPLNQLASISVPEPRTIVINPFDKSAIKAIEKAILNS 81 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCEEEEECCCCCCHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCC
T ss_conf 27899999999999999997643178997880875885489966699997610688776887507855599999998407
Q ss_pred CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 88998454773478861555689999999999998889999999999999999998753589997899888999999999
Q gi|254780776|r 87 NLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITD 166 (186)
Q Consensus 87 ~l~l~p~~dg~~I~i~iP~lT~E~R~~lvK~~k~~~E~~K~~iR~iR~~~~~~ikk~~k~~~iseD~~~~~~~~iq~lt~ 166 (186)
T Consensus 82 ~l~l~P~~dg~~Iri~iP~lT~E~R~~l~K~ak~~~E~aK~~iR~iR~~~~~~ikk~~k~~~iseD~~k~~~~~iqkltd 161 (179)
T cd00520 82 DLGLNPNNDGAVIRVNLPPLTEERRKELVKDAKKIAEEAKVAIRNIRRDANDKIKKLEKEKEISEDEVKKAEEDLQKLTD 161 (179)
T ss_pred CCCCCCEECCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99976223687667369989999999999999999999999999999999999987663389987688899999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999998874
Q gi|254780776|r 167 STIKNIDSFFEEKKKEIM 184 (186)
Q Consensus 167 ~~~~~id~~~~~Kekell 184 (186)
T Consensus 162 ~~~~~id~~~~~Kekeil 179 (179)
T cd00520 162 EYIKKIDELLKSKEKELL 179 (179)
T ss_pred HHHHHHHHHHHHHHHHHC
T ss_conf 999999999999988539