HHsearch alignment for GI: 254780776 and conserved domain: cd00520

>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=100.00  E-value=0  Score=391.39  Aligned_cols=178  Identities=44%  Similarity=0.734  Sum_probs=176.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCC
Q ss_conf             89999999999999999975313888896782450788558642399876512057838989965967899999996317
Q gi|254780776|r    7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHES   86 (186)
Q Consensus         7 l~~~~~~m~~~i~~l~~el~~irtGrasp~lld~i~V~~~g~~~pL~~lA~Is~~~~~~l~I~~~D~~~ik~I~kAI~~s   86 (186)
T Consensus         2 l~~~~~~m~k~i~~l~~~~~~irtGrasp~lld~i~V~~yg~~~pL~~lA~Is~~~~~~l~I~~~D~~~v~~I~kAI~~s   81 (179)
T cd00520           2 LKEAKEKMEKSLEALKEELNKIRTGRANPALLDSITVEYYGAPTPLNQLASISVPEPRTIVINPFDKSAIKAIEKAILNS   81 (179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCEEEEECCCCCCHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCC
T ss_conf             27899999999999999997643178997880875885489966699997610688776887507855599999998407


Q ss_pred             CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             88998454773478861555689999999999998889999999999999999998753589997899888999999999
Q gi|254780776|r   87 NLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITD  166 (186)
Q Consensus        87 ~l~l~p~~dg~~I~i~iP~lT~E~R~~lvK~~k~~~E~~K~~iR~iR~~~~~~ikk~~k~~~iseD~~~~~~~~iq~lt~  166 (186)
T Consensus        82 ~l~l~P~~dg~~Iri~iP~lT~E~R~~l~K~ak~~~E~aK~~iR~iR~~~~~~ikk~~k~~~iseD~~k~~~~~iqkltd  161 (179)
T cd00520          82 DLGLNPNNDGAVIRVNLPPLTEERRKELVKDAKKIAEEAKVAIRNIRRDANDKIKKLEKEKEISEDEVKKAEEDLQKLTD  161 (179)
T ss_pred             CCCCCCEECCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf             99976223687667369989999999999999999999999999999999999987663389987688899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999998874
Q gi|254780776|r  167 STIKNIDSFFEEKKKEIM  184 (186)
Q Consensus       167 ~~~~~id~~~~~Kekell  184 (186)
T Consensus       162 ~~~~~id~~~~~Kekeil  179 (179)
T cd00520         162 EYIKKIDELLKSKEKELL  179 (179)
T ss_pred             HHHHHHHHHHHHHHHHHC
T ss_conf             999999999999988539