HHsearch alignment for GI: 254780776 and conserved domain: pfam01765
>pfam01765 RRF Ribosome recycling factor. The ribosome recycling factor (RRF / ribosome release factor) dissociates the ribosome from the mRNA after termination of translation, and is essential bacterial growth. Thus ribosomes are "recycled" and ready for another round of protein synthesis.
Probab=100.00 E-value=0 Score=374.15 Aligned_cols=165 Identities=50% Similarity=0.810 Sum_probs=163.5
Q ss_pred HHHHHHHHCCCCCCCHHHHCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCEE
Q ss_conf 99999753138888967824507885586423998765120578389899659678999999963178899845477347
Q gi|254780776|r 20 FLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVL 99 (186)
Q Consensus 20 ~l~~el~~irtGrasp~lld~i~V~~~g~~~pL~~lA~Is~~~~~~l~I~~~D~~~ik~I~kAI~~s~l~l~p~~dg~~I 99 (186)
T Consensus 1 ~l~~~l~~irtGrasp~lld~i~V~~yg~~~pL~~lA~Isv~~~~~l~I~~~D~~~v~~I~kAI~~s~LglnP~~dg~~I 80 (165)
T pfam01765 1 ALKKELSKIRTGRANPSLLDNIRVDYYGSPTPLNQLASISVPEARTLLITPWDKSLIKAIEKAILASDLGLNPQNDGQVI 80 (165)
T ss_pred CHHHHHHHCCCCCCCHHHHCCEEEEECCCCCCHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCEE
T ss_conf 94778632536889978848869856899765899853027898879987342443799999998579997877478778
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88615556899999999999988899999999999999999987535899978998889999999999999999999999
Q gi|254780776|r 100 RIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 (186)
Q Consensus 100 ~i~iP~lT~E~R~~lvK~~k~~~E~~K~~iR~iR~~~~~~ikk~~k~~~iseD~~~~~~~~iq~lt~~~~~~id~~~~~K 179 (186)
T Consensus 81 rv~iP~lT~E~R~~lvK~~k~~~E~aKv~iR~iR~~~~~~iKk~~~~~~iseD~~k~~~~~iq~ltd~~~~~id~~~~~K 160 (165)
T pfam01765 81 RIPIPPLTEERRKELVKQAKKLAEEAKVAIRNIRRDANDKLKKLEKDKEISEDEVKKAEKEIQKLTDKYIKKIDELLKKK 160 (165)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98589888999999999999999999999999999999999876504999877888999999999999999999999999
Q ss_pred HHHHH
Q ss_conf 98874
Q gi|254780776|r 180 KKEIM 184 (186)
Q Consensus 180 ekell 184 (186)
T Consensus 161 ekeil 165 (165)
T pfam01765 161 EKELM 165 (165)
T ss_pred HHHHC
T ss_conf 98639