BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780776|ref|YP_003065189.1| ribosome recycling factor [Candidatus Liberibacter asiaticus str. psy62] (186 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780776|ref|YP_003065189.1| ribosome recycling factor [Candidatus Liberibacter asiaticus str. psy62] gi|170785427|gb|ACB37708.1| ribosome recycling factor [Candidatus Liberibacter asiaticus] gi|254040453|gb|ACT57249.1| ribosome recycling factor [Candidatus Liberibacter asiaticus str. psy62] Length = 186 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 186/186 (100%), Positives = 186/186 (100%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV Sbjct: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA Sbjct: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK Sbjct: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 Query: 181 KEIMHF 186 KEIMHF Sbjct: 181 KEIMHF 186 >gi|315121993|ref|YP_004062482.1| ribosome recycling factor [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495395|gb|ADR51994.1| ribosome recycling factor [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 186 Score = 307 bits (786), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 157/186 (84%), Positives = 171/186 (91%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 MNQ IDL++IKDRM D ISFLKKDMMTLRTGRVS SMLDLVKV++YGS VPLNQVANVTV Sbjct: 1 MNQAIDLKSIKDRMNDAISFLKKDMMTLRTGRVSTSMLDLVKVDSYGSRVPLNQVANVTV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 L+PR L VSVWD MV+SVERGIH+SNLG NPIVEGQVLRIPVPETTEERRLALVKVAH Sbjct: 61 LDPRTLAVSVWDSSMVSSVERGIHDSNLGFNPIVEGQVLRIPVPETTEERRLALVKVAHN 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAEKSKISVRNIRRDGMD+LKKS+KSGK SED+ SLEND+QK+TD+TIK+IDSFFEEKK Sbjct: 121 YAEKSKISVRNIRRDGMDYLKKSKKSGKISEDIAESLENDVQKMTDATIKDIDSFFEEKK 180 Query: 181 KEIMHF 186 KEIM F Sbjct: 181 KEIMRF 186 >gi|86357537|ref|YP_469429.1| ribosome recycling factor [Rhizobium etli CFN 42] gi|190891610|ref|YP_001978152.1| ribosome recycling factor protein [Rhizobium etli CIAT 652] gi|123512098|sp|Q2K8Y4|RRF_RHIEC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238692538|sp|B3PYP5|RRF_RHIE6 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|86281639|gb|ABC90702.1| ribosome recycling factor protein [Rhizobium etli CFN 42] gi|190696889|gb|ACE90974.1| ribosome recycling factor protein [Rhizobium etli CIAT 652] gi|327189225|gb|EGE56404.1| ribosome recycling factor [Rhizobium etli CNPAF512] Length = 186 Score = 231 bits (589), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 112/186 (60%), Positives = 140/186 (75%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M++ ID++ +K RM +S K D+ +LRTGR S ++LD V +EAYGS VPLNQVAN+TV Sbjct: 1 MSEGIDIKELKRRMDGAVSAFKSDIASLRTGRASANILDPVTIEAYGSRVPLNQVANITV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPRML VSVWDK MV++VERGI ESNLGLNPIV+GQ LRIP+PE EERR +LVKVAH Sbjct: 61 PEPRMLTVSVWDKSMVSAVERGIRESNLGLNPIVDGQSLRIPLPELNEERRKSLVKVAHD 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAEKSK+++R++RRDGMD LKK+ K G +D + +QK+TD TI ID EK+ Sbjct: 121 YAEKSKVAIRHVRRDGMDGLKKAEKDGVIGQDESRAQSERVQKMTDETISEIDRLLGEKE 180 Query: 181 KEIMHF 186 KEIM Sbjct: 181 KEIMQV 186 >gi|116251980|ref|YP_767818.1| ribosome recycling factor [Rhizobium leguminosarum bv. viciae 3841] gi|241204507|ref|YP_002975603.1| ribosome recycling factor [Rhizobium leguminosarum bv. trifolii WSM1325] gi|166231215|sp|Q1MH51|RRF_RHIL3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|115256628|emb|CAK07716.1| putative ribosome recycling factor (ribosome releasing factor) [Rhizobium leguminosarum bv. viciae 3841] gi|240858397|gb|ACS56064.1| ribosome recycling factor [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 186 Score = 228 bits (582), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 112/186 (60%), Positives = 140/186 (75%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M++ ID++ +K RM IS K D+ +LRTGR S ++LD V VEAYGS +PLNQVAN+TV Sbjct: 1 MSEGIDIKELKRRMDGAISVFKGDIASLRTGRASANILDPVTVEAYGSRMPLNQVANITV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPRML VSVWDK MV++VERGI ESNLGLNPI++GQ LRIP+PE EERR +LVKVAH Sbjct: 61 PEPRMLSVSVWDKSMVSAVERGIRESNLGLNPIIDGQNLRIPLPELNEERRKSLVKVAHD 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAEKSK+++R++RRDGMD LKK+ K G +D + +QK+TD TI ID EK+ Sbjct: 121 YAEKSKVAIRHVRRDGMDGLKKAEKDGVIGQDESRAQSERVQKMTDETISEIDRLLGEKE 180 Query: 181 KEIMHF 186 KEIM Sbjct: 181 KEIMQV 186 >gi|209549185|ref|YP_002281102.1| ribosome recycling factor [Rhizobium leguminosarum bv. trifolii WSM2304] gi|226749935|sp|B5ZN86|RRF_RHILW RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|209534941|gb|ACI54876.1| ribosome recycling factor [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 186 Score = 228 bits (581), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 111/186 (59%), Positives = 139/186 (74%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M + ID++ +K RM +S K D+ +LRTGR S ++LD V +EAYGS +PLNQVAN+TV Sbjct: 1 MTEGIDIKELKRRMDGAVSAFKSDIASLRTGRASANILDPVTIEAYGSRMPLNQVANITV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPRML VSVWDK MV++VERGI ESNLGLNPIV+GQ LRIP+PE EERR +LVKVAH Sbjct: 61 PEPRMLSVSVWDKSMVSAVERGIRESNLGLNPIVDGQSLRIPLPELNEERRKSLVKVAHD 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAEKSK+++R++RRDGMD LKK+ K G +D + +QK+TD TI ID EK+ Sbjct: 121 YAEKSKVAIRHVRRDGMDGLKKAEKDGVIGQDEGRAQSERVQKMTDETISEIDRLLGEKE 180 Query: 181 KEIMHF 186 KEIM Sbjct: 181 KEIMQV 186 >gi|222085860|ref|YP_002544391.1| ribosome recycling factor [Agrobacterium radiobacter K84] gi|254809484|sp|B9JEX3|RRF_AGRRK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|221723308|gb|ACM26464.1| ribosome recycling factor [Agrobacterium radiobacter K84] Length = 186 Score = 228 bits (581), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 110/186 (59%), Positives = 140/186 (75%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M++ DL+ +K RM I+ K D+ +LRTGR S ++LD V +EAYGS +PLNQVAN+TV Sbjct: 1 MSEGTDLKELKRRMDGAIAAFKSDIASLRTGRASANILDPVTIEAYGSRMPLNQVANITV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPRML VSVWDK MV +VERGI ESNLGLNPI++GQ LRIP+PE EERR +LVKVAH Sbjct: 61 PEPRMLSVSVWDKSMVGAVERGIRESNLGLNPIIDGQNLRIPLPELNEERRRSLVKVAHE 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAEK+K+++R++RRDGMD LKK+ K G +D SL +QK+TD TI +ID +K+ Sbjct: 121 YAEKAKVAIRHVRRDGMDGLKKAEKDGDIGQDEGRSLSERVQKMTDETISDIDRLLVDKE 180 Query: 181 KEIMHF 186 KEIM Sbjct: 181 KEIMQV 186 >gi|218679110|ref|ZP_03527007.1| ribosome recycling factor [Rhizobium etli CIAT 894] Length = 186 Score = 226 bits (577), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 110/186 (59%), Positives = 139/186 (74%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M++ ID++ +K RM +S K D+ +LRTGR S ++LD V +EAYGS +PLNQVAN+TV Sbjct: 1 MSEGIDIKELKRRMDGAVSAFKSDIASLRTGRASANILDPVTIEAYGSRMPLNQVANITV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPRML VSVWDK MV +V+RGI ESNLGLNPIV+GQ LRIP+PE EERR +LVKVAH Sbjct: 61 PEPRMLSVSVWDKSMVGAVDRGIRESNLGLNPIVDGQNLRIPLPELNEERRKSLVKVAHD 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAEKSK+++R++RRDGMD LKK+ K G +D + +QK+TD TI ID EK+ Sbjct: 121 YAEKSKVAIRHVRRDGMDGLKKAEKDGVIGQDEGRAQSERVQKMTDETISEIDRLLAEKE 180 Query: 181 KEIMHF 186 KEIM Sbjct: 181 KEIMQV 186 >gi|222148859|ref|YP_002549816.1| ribosome recycling factor [Agrobacterium vitis S4] gi|254809485|sp|B9JX30|RRF_AGRVS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|221735845|gb|ACM36808.1| ribosome recycling factor [Agrobacterium vitis S4] Length = 186 Score = 224 bits (572), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 111/186 (59%), Positives = 136/186 (73%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M IDL +IK RM I+ K D+ +LRTGR S ++LD V VEAYGS V LN VAN+TV Sbjct: 1 MTAGIDLNDIKRRMDGAINAFKSDLASLRTGRASANILDPVMVEAYGSRVALNTVANITV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPRML VS+WDK MV +V+R I ESNLGLNPIV+GQ LRIP+PE EERR +LVKVAH Sbjct: 61 PEPRMLGVSIWDKSMVGAVDRAIRESNLGLNPIVDGQNLRIPLPELNEERRKSLVKVAHG 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE SK+++R++RRDGMD LKK+ K G+ +D SL +QK+TD TI +ID EK+ Sbjct: 121 YAENSKVAIRHVRRDGMDSLKKAEKDGEIGKDDARSLSEKLQKMTDDTISDIDRLLAEKE 180 Query: 181 KEIMHF 186 KEIM Sbjct: 181 KEIMQV 186 >gi|15965251|ref|NP_385604.1| ribosome recycling factor [Sinorhizobium meliloti 1021] gi|307309274|ref|ZP_07588942.1| ribosome recycling factor [Sinorhizobium meliloti BL225C] gi|307317016|ref|ZP_07596457.1| ribosome recycling factor [Sinorhizobium meliloti AK83] gi|22001945|sp|Q92Q52|RRF_RHIME RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|15074431|emb|CAC46077.1| Probable ribosome recycling factor (ribosome releasing factor) [Sinorhizobium meliloti 1021] gi|306897104|gb|EFN27849.1| ribosome recycling factor [Sinorhizobium meliloti AK83] gi|306900275|gb|EFN30892.1| ribosome recycling factor [Sinorhizobium meliloti BL225C] Length = 186 Score = 222 bits (566), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 110/186 (59%), Positives = 137/186 (73%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M++ +DL+ +K RM I+ K D+ +LRTGR S ++LD V VEAYGS +PLNQVAN+TV Sbjct: 1 MSEGVDLKELKRRMDGAIAAFKHDIASLRTGRASANVLDPVTVEAYGSRMPLNQVANITV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E RML VSVWDK MV +VER I ESNLGLNPIV+GQ LRIP+PE EERR +LVKVAH Sbjct: 61 PESRMLSVSVWDKSMVGAVERAIRESNLGLNPIVDGQNLRIPLPELNEERRKSLVKVAHD 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAEKSK++VR++RRDGMD LKK+ K G+ +D + +QK+TD I ID EK+ Sbjct: 121 YAEKSKVAVRHVRRDGMDDLKKAEKDGEIGQDESRAQSERVQKMTDDVISEIDRLLAEKE 180 Query: 181 KEIMHF 186 KEIM Sbjct: 181 KEIMQV 186 >gi|150396353|ref|YP_001326820.1| ribosome recycling factor [Sinorhizobium medicae WSM419] gi|166231511|sp|A6U8K5|RRF_SINMW RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|150027868|gb|ABR59985.1| ribosome recycling factor [Sinorhizobium medicae WSM419] Length = 186 Score = 222 bits (565), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 110/186 (59%), Positives = 137/186 (73%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M++ +DL+ +K RM IS K D+ +LRTGR S ++LD V VEAYGS +PLNQVAN+TV Sbjct: 1 MSEGVDLKELKRRMDGAISAFKHDIASLRTGRASANVLDPVTVEAYGSRMPLNQVANITV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E RML VSVWDK MV +VER I ESNLGLNPIV+GQ LRIP+PE EERR +LVKVAH Sbjct: 61 PEARMLSVSVWDKSMVGAVERAIRESNLGLNPIVDGQNLRIPLPELNEERRKSLVKVAHD 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAEKSK++VR++RRDGMD LKK+ K G+ +D + +QK+TD I ID +K+ Sbjct: 121 YAEKSKVAVRHVRRDGMDDLKKAEKDGEIGQDESRAQSERVQKMTDDVISEIDRLLADKE 180 Query: 181 KEIMHF 186 KEIM Sbjct: 181 KEIMQV 186 >gi|325292740|ref|YP_004278604.1| Ribosome recycling factor [Agrobacterium sp. H13-3] gi|325060593|gb|ADY64284.1| Ribosome recycling factor [Agrobacterium sp. H13-3] Length = 185 Score = 221 bits (564), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 109/182 (59%), Positives = 134/182 (73%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 IDL +IK RM I+ K D+ +LRTGR S ++LD V +EAYGS VPLNQVAN+TV EPR Sbjct: 4 IDLNDIKRRMDGAINAFKSDIASLRTGRASANILDPVTIEAYGSRVPLNQVANITVPEPR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 ML V++WDK MV +V+R I ESNLGLNPIV+GQ LRIP+PE EERR +LVKVAH YAEK Sbjct: 64 MLGVNIWDKSMVNAVDRAIRESNLGLNPIVDGQNLRIPLPELNEERRKSLVKVAHDYAEK 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 SK+++R++RRDGMD LKK+ K G +D +QKITD TI I+ EK+KEIM Sbjct: 124 SKVAIRHVRRDGMDGLKKAEKDGDIGQDESRGQSEKVQKITDDTISEIERLLGEKEKEIM 183 Query: 185 HF 186 Sbjct: 184 QV 185 >gi|218459807|ref|ZP_03499898.1| ribosome recycling factor [Rhizobium etli Kim 5] Length = 177 Score = 220 bits (560), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 106/176 (60%), Positives = 133/176 (75%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M++ ID++ +K RM +S K D+ +LRTGR S ++LD V +EAYGS VPLNQVAN+TV Sbjct: 1 MSEGIDIKELKRRMDGAVSAFKSDIASLRTGRASANILDPVTIEAYGSRVPLNQVANITV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPRML VSVWDK MV++VERGI ESNLGLNPIV+GQ LRIP+PE EERR +LVKVAH Sbjct: 61 PEPRMLTVSVWDKSMVSAVERGIRESNLGLNPIVDGQSLRIPLPELNEERRKSLVKVAHD 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFF 176 YAEKSK+++R++RRDGMD LKK+ K G +D + +QK+TD TI ID Sbjct: 121 YAEKSKVAIRHVRRDGMDGLKKAEKDGVIGQDESRAQSERVQKMTDETISEIDRLL 176 >gi|15888703|ref|NP_354384.1| ribosome recycling factor [Agrobacterium tumefaciens str. C58] gi|22001938|sp|Q8UFM0|RRF_AGRT5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|15156443|gb|AAK87169.1| ribosome recycling factor [Agrobacterium tumefaciens str. C58] Length = 185 Score = 219 bits (558), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 106/182 (58%), Positives = 134/182 (73%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 IDL +IK RM I+ K D+ +LRTGR S ++LD V ++AYGS VPLNQVAN+TV EPR Sbjct: 4 IDLNDIKRRMDGAINAFKSDIASLRTGRASANILDPVTIDAYGSRVPLNQVANITVPEPR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 ML V++WDK MV +V+R I ESNLGLNPIV+GQ LRIP+PE EERR +LVKVAH Y+EK Sbjct: 64 MLGVNIWDKSMVNAVDRAIRESNLGLNPIVDGQNLRIPLPELNEERRKSLVKVAHEYSEK 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +K+++R++RRDGMD LKK+ K G +D +QK+TD TI ID EK+KEIM Sbjct: 124 AKVAIRHVRRDGMDGLKKAEKDGDIGQDESRGQSEKVQKMTDDTISEIDRLLAEKEKEIM 183 Query: 185 HF 186 Sbjct: 184 QV 185 >gi|163760886|ref|ZP_02167965.1| ribosome recycling factor [Hoeflea phototrophica DFL-43] gi|162281930|gb|EDQ32222.1| ribosome recycling factor [Hoeflea phototrophica DFL-43] Length = 186 Score = 219 bits (557), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 107/186 (57%), Positives = 136/186 (73%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ D + +K RM I+ K D+ +LRTGR S ++LD V VEAYGS VPLNQVANVTV Sbjct: 1 MSDAADSKELKRRMDGAINAFKSDIASLRTGRASANVLDPVMVEAYGSKVPLNQVANVTV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPRML VSVWDK+MV +V+RGI E+NLGLNPIV+GQ LRIP+PE EERR +LVKV+H Sbjct: 61 PEPRMLGVSVWDKQMVGAVDRGIREANLGLNPIVDGQNLRIPLPELNEERRKSLVKVSHT 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE +++++RN+RRDGMD LKK+ K G S+D + +QK+TD I ID +K+ Sbjct: 121 YAENARVAIRNVRRDGMDTLKKAEKDGDISQDDSRRESDQVQKMTDEMISEIDRLLVDKE 180 Query: 181 KEIMHF 186 KEIM Sbjct: 181 KEIMQV 186 >gi|227821900|ref|YP_002825870.1| ribosome recycling factor [Sinorhizobium fredii NGR234] gi|254809525|sp|C3MBQ5|RRF_RHISN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|227340899|gb|ACP25117.1| ribosome recycling factor [Sinorhizobium fredii NGR234] Length = 186 Score = 218 bits (556), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 107/186 (57%), Positives = 136/186 (73%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M++ ++L+ +K RM I+ K D+ +LRTGR S ++LD V VEAYGS +PLNQVAN+ V Sbjct: 1 MSEGVELKELKRRMDGAIAAFKHDIASLRTGRASANVLDPVTVEAYGSRMPLNQVANIMV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPRML VSVWDK MV +V+R I ESNLGLNPI++GQ LRIP+PE EERR +LVKVAH Sbjct: 61 PEPRMLSVSVWDKTMVGAVDRAIRESNLGLNPIIDGQNLRIPLPELNEERRKSLVKVAHD 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAEKSK++VR++RRDGMD LKK+ K G +D + +QK+TD I ID EK+ Sbjct: 121 YAEKSKVAVRHVRRDGMDGLKKAEKDGDIGQDESRAQSERVQKMTDEVISEIDRLLAEKE 180 Query: 181 KEIMHF 186 KEIM Sbjct: 181 KEIMQV 186 >gi|90419595|ref|ZP_01227505.1| ribosome recycling factor [Aurantimonas manganoxydans SI85-9A1] gi|90336532|gb|EAS50273.1| ribosome recycling factor [Aurantimonas manganoxydans SI85-9A1] Length = 185 Score = 210 bits (535), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 103/182 (56%), Positives = 129/182 (70%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 +DL +K RM I+ LK D+ LRTGR SPS+LD + V+AYGS +PLNQVANV+V EPR Sbjct: 4 MDLNELKRRMDGAITSLKSDLTGLRTGRASPSLLDPIYVDAYGSKMPLNQVANVSVPEPR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ V+VWDK+MV VER I ESNLGLNPI +G LRIP+PE E+RR LVKVAH YAE Sbjct: 64 MVTVTVWDKQMVGKVERAIRESNLGLNPITDGATLRIPLPELNEQRRKELVKVAHQYAEG 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +K++VR++RRDGM+ LKK K G +D + +QK+TD TI IDS K+ EIM Sbjct: 124 AKVAVRHVRRDGMETLKKLEKDGDIGQDESRQQSDRVQKMTDETISEIDSALAVKEAEIM 183 Query: 185 HF 186 Sbjct: 184 QV 185 >gi|118590008|ref|ZP_01547412.1| ribosome releasing factor [Stappia aggregata IAM 12614] gi|118437505|gb|EAV44142.1| ribosome releasing factor [Stappia aggregata IAM 12614] Length = 187 Score = 208 bits (530), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 96/179 (53%), Positives = 132/179 (73%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 +DL ++K RM +S LK + LRTGR S SM+D + VEAYG +P+NQVA V+V EPR Sbjct: 6 VDLDDLKRRMQGALSVLKTEFAGLRTGRASSSMMDPITVEAYGQSMPINQVATVSVPEPR 65 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 ML V VWDK MV++VE+ I ESNLGLNP+V+G +LR+P+PE +ERR L+KVAH YAE+ Sbjct: 66 MLAVQVWDKSMVSAVEKAIRESNLGLNPVVDGMLLRLPIPELNQERRQELIKVAHKYAEQ 125 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +K+S+R++RRDGMD KK+ K G S+D +++QK+TD I +DS E+K++EI Sbjct: 126 AKVSIRHVRRDGMDAAKKAEKDGDISQDDSRVASDEVQKLTDQMIAEVDSMLEKKEQEI 184 >gi|298291819|ref|YP_003693758.1| ribosome recycling factor [Starkeya novella DSM 506] gi|296928330|gb|ADH89139.1| ribosome recycling factor [Starkeya novella DSM 506] Length = 187 Score = 208 bits (530), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 99/180 (55%), Positives = 135/180 (75%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 ID+ ++K RM I+ LK+++ LRTGR S S+L+ ++V+AYGSH+PLNQVA+V V EPR Sbjct: 6 IDIADLKRRMQGAIAVLKQELSGLRTGRASASLLEPIQVDAYGSHMPLNQVASVNVPEPR 65 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 +L V VWD+ MVA+VE+ I ESNLGLNP EGQVLR+ +PE T++RR LVKVAH YAE Sbjct: 66 LLSVQVWDRGMVAAVEKAIRESNLGLNPQTEGQVLRVRIPELTQDRRQELVKVAHKYAEA 125 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++SVR++RRDG+D LKK+ K G+ S D + L + +QK TD +I ID K+KEI+ Sbjct: 126 ARVSVRHVRRDGLDALKKAEKDGEMSSDDLDRLADQVQKATDQSITEIDQTLSTKEKEIL 185 >gi|254469349|ref|ZP_05082754.1| ribosome recycling factor [Pseudovibrio sp. JE062] gi|211961184|gb|EEA96379.1| ribosome recycling factor [Pseudovibrio sp. JE062] Length = 185 Score = 205 bits (521), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 97/179 (54%), Positives = 131/179 (73%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 +D ++ RM I+ LK + LRTGR S SMLD + V+AYG+ +P+NQVA V+V EPR Sbjct: 4 LDYDDLDRRMNGAITALKHEFAGLRTGRASASMLDTISVDAYGAPMPINQVATVSVPEPR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 ML V VWDK MVA+ E+ I ES+LGLNP+V+GQ+LR+P+PE EERR LVKVAH YAE+ Sbjct: 64 MLSVQVWDKSMVAATEKAIRESSLGLNPVVDGQILRLPIPELNEERRQELVKVAHKYAEQ 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +KI+ R++RRDGMD +KK K+G+ SED S + +QK+TD I +DS +K++EI Sbjct: 124 AKIAARHVRRDGMDTIKKLEKAGEMSEDDARSASDMVQKMTDDIIGEVDSVLAKKEQEI 182 >gi|254504672|ref|ZP_05116823.1| ribosome recycling factor [Labrenzia alexandrii DFL-11] gi|222440743|gb|EEE47422.1| ribosome recycling factor [Labrenzia alexandrii DFL-11] Length = 187 Score = 204 bits (519), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 93/179 (51%), Positives = 131/179 (73%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 +DL ++K RM +S LK D LRTGR S SMLD + V+AYG +PL+QV V+V EPR Sbjct: 6 VDLDDLKRRMQGALSSLKTDFSGLRTGRASASMLDPISVDAYGQSMPLSQVGTVSVPEPR 65 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ + VWDK MVA+VE+ I ESNLGLNP+V+GQ+LR+P+PE +ERR L+KVAH YAE+ Sbjct: 66 MVAIQVWDKSMVAAVEKAIRESNLGLNPVVDGQLLRLPIPELNQERRQELIKVAHKYAEQ 125 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +K+++R++RRDGMD KK+ K G+ S+D +++QK+TD I +D+ +K+ EI Sbjct: 126 AKVAIRHVRRDGMDDAKKAEKDGEISQDDSRVASDEVQKLTDGMIGEVDAMLAKKEAEI 184 >gi|260459217|ref|ZP_05807472.1| ribosome recycling factor [Mesorhizobium opportunistum WSM2075] gi|259034771|gb|EEW36027.1| ribosome recycling factor [Mesorhizobium opportunistum WSM2075] Length = 184 Score = 204 bits (519), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 95/177 (53%), Positives = 129/177 (72%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 ++K RM I+ K D+ +LRTGR S ++LD ++V+AYG+ +P+NQVANVTV EPRM+ V Sbjct: 7 DLKRRMDGAIAAFKHDLASLRTGRASSNLLDAIQVQAYGTTMPINQVANVTVPEPRMISV 66 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 SVWDK MV++V+R I ESNLG NPIV+G LRIP+PE E+RR LVK++H YAE ++++ Sbjct: 67 SVWDKSMVSAVDRAIRESNLGFNPIVDGTNLRIPLPELNEQRRKELVKISHGYAENARVA 126 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 R++RRDGMD LKK+ K G SED + +QK+TD TI ID +K+ EIM Sbjct: 127 ARHVRRDGMDFLKKAEKDGDISEDDHRKRSDQVQKLTDETISTIDHLLSDKEAEIMQ 183 >gi|13470840|ref|NP_102409.1| ribosome recycling factor [Mesorhizobium loti MAFF303099] gi|22001948|sp|Q98MB8|RRF_RHILO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|14021583|dbj|BAB48195.1| ribosome releasing factor [Mesorhizobium loti MAFF303099] Length = 184 Score = 203 bits (516), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 94/177 (53%), Positives = 128/177 (72%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 ++K RM I+ K D+ +LRTGR S ++LD ++V+AYG+ +P+NQVANVTV EPRM+ V Sbjct: 7 DLKRRMDGAIAAFKHDLASLRTGRASSNLLDAIQVQAYGTTMPINQVANVTVPEPRMISV 66 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 S+WDK MV +V+R I ESNLG NPIV+G LRIP+PE E+RR LVK++H YAE ++++ Sbjct: 67 SIWDKSMVGAVDRAIRESNLGFNPIVDGTNLRIPLPELNEQRRKELVKISHGYAENARVA 126 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 R++RRDGMD LKK+ K G SED + +QK+TD TI ID +K+ EIM Sbjct: 127 ARHVRRDGMDFLKKAEKDGVISEDDQRKRSDQVQKLTDETISTIDHLLSDKEAEIMQ 183 >gi|319783668|ref|YP_004143144.1| ribosome recycling factor [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169556|gb|ADV13094.1| ribosome recycling factor [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 184 Score = 203 bits (516), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 94/177 (53%), Positives = 128/177 (72%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 ++K RM I+ K D+ +LRTGR S ++LD ++V+AYG+ +P+NQVANV+V EPRM+ V Sbjct: 7 DLKRRMDGAIAAFKHDLASLRTGRASSNLLDAIQVQAYGTTMPINQVANVSVPEPRMISV 66 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 SVWDK MV +V+R I ESNLG NPIV+G LRIP+PE E+RR LVK++H YAE ++++ Sbjct: 67 SVWDKSMVGAVDRAIRESNLGFNPIVDGTNLRIPLPELNEQRRKELVKISHTYAENARVA 126 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 R++RRDGMD LKK+ K G SED + +QK+TD TI ID +K+ EIM Sbjct: 127 ARHVRRDGMDFLKKAEKDGDISEDDQRKRSDQVQKLTDETISTIDHLLSDKEAEIMQ 183 >gi|75676047|ref|YP_318468.1| ribosome recycling factor [Nitrobacter winogradskyi Nb-255] gi|123613278|sp|Q3SRH5|RRF_NITWN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|74420917|gb|ABA05116.1| ribosome recycling factor [Nitrobacter winogradskyi Nb-255] Length = 187 Score = 202 bits (513), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 101/180 (56%), Positives = 129/180 (71%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D+ ++K RM LK ++ LRTGR S SMLD V+V+AYGSH+PLNQVA ++V EPR Sbjct: 6 FDIGDLKRRMQGATQSLKHELGGLRTGRASSSMLDPVQVDAYGSHMPLNQVATISVPEPR 65 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 +L V VWDK MV +VE+ I +SNLGL+P EGQVLR+ +PE EERR LVKVAH YAE Sbjct: 66 LLSVQVWDKSMVKAVEKAIVDSNLGLSPATEGQVLRLRIPELNEERRKELVKVAHKYAEA 125 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +K++VR++RRDG+D LKK K+ + SED L ND+QK TDS I ID K+KEI+ Sbjct: 126 AKVAVRHVRRDGLDTLKKLEKNHEISEDDEKRLANDVQKATDSVISEIDQLLAGKEKEIL 185 >gi|154248356|ref|YP_001419314.1| ribosome recycling factor [Xanthobacter autotrophicus Py2] gi|238686805|sp|A7INR3|RRF_XANP2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|154162441|gb|ABS69657.1| ribosome recycling factor [Xanthobacter autotrophicus Py2] Length = 187 Score = 202 bits (513), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 96/181 (53%), Positives = 129/181 (71%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 D+ ++K RM + L+ ++ LRTGR S S+LD + +EAYG+ +PLNQVA V+V E Sbjct: 5 TFDMSDLKRRMQGAVGVLRDELGGLRTGRASASLLDPITIEAYGARMPLNQVATVSVPEA 64 Query: 64 RMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAE 123 R+L V VWD+ MV++VE+ I +SNLGLNP EGQVLR+ +PE +ERR LVKVAH YAE Sbjct: 65 RLLSVQVWDRGMVSAVEKAIRDSNLGLNPNTEGQVLRLRIPELNQERRQELVKVAHKYAE 124 Query: 124 KSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +K++VR++RRDGMDHLKK K G+ S D + L D+QK TD TI ID +K+KEI Sbjct: 125 AAKVAVRHVRRDGMDHLKKVEKDGEMSSDDLDRLSKDVQKATDETIAEIDQTLAQKEKEI 184 Query: 184 M 184 + Sbjct: 185 L 185 >gi|49474293|ref|YP_032335.1| ribosome recycling factor [Bartonella quintana str. Toulouse] gi|60390253|sp|Q6FZN3|RRF_BARQU RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|49239797|emb|CAF26187.1| Ribosome recycling factor [Bartonella quintana str. Toulouse] Length = 186 Score = 202 bits (513), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 100/186 (53%), Positives = 131/186 (70%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 MN + + ++K RM IS + ++ LRTGR S S+L+ + VEAYGS V +NQVAN++V Sbjct: 1 MNVLSIMDDLKRRMDGAISAFQHELGGLRTGRASASLLEPLTVEAYGSVVHINQVANISV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPRML VSVWDK MV +VER I +S LGLNPI +G LRIP+PE EERR LVK+AH Sbjct: 61 PEPRMLSVSVWDKTMVGAVERAIRDSGLGLNPITDGMNLRIPLPELNEERRKELVKIAHQ 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE+++++ R++RRDGMD+LKK K G+ S+D L +QK+TD TI NID K+ Sbjct: 121 YAEQARVATRHVRRDGMDNLKKLEKEGEISQDEAHGLSEKVQKLTDETIANIDKILAVKE 180 Query: 181 KEIMHF 186 EIMH Sbjct: 181 SEIMHV 186 >gi|83858385|ref|ZP_00951907.1| ribosome releasing factor [Oceanicaulis alexandrii HTCC2633] gi|83853208|gb|EAP91060.1| ribosome releasing factor [Oceanicaulis alexandrii HTCC2633] Length = 185 Score = 201 bits (512), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 94/181 (51%), Positives = 127/181 (70%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D+++I+ RM I LKK+ LRTGR S S+LD +KVEAYG+ P+NQV NV+V EPR Sbjct: 4 FDIKDIERRMDGAIDALKKEFGGLRTGRASASLLDPIKVEAYGALTPINQVGNVSVPEPR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ +SVWDK + +VE+ I S+LGLNP+ EG+ LRIP+P EERR L K A AYAE Sbjct: 64 MITISVWDKNLAGAVEKAIRNSSLGLNPVSEGETLRIPIPPLNEERRNELAKTAGAYAEN 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++I+VRN+RRDGMD LK+ K G+ SED L + IQK+TD+ + ID+ + K++EI Sbjct: 124 ARIAVRNVRRDGMDQLKRDEKDGEISEDQHKKLADQIQKLTDAKVSAIDALLKTKQEEIT 183 Query: 185 H 185 Sbjct: 184 Q 184 >gi|307942145|ref|ZP_07657496.1| ribosome recycling factor [Roseibium sp. TrichSKD4] gi|307774431|gb|EFO33641.1| ribosome recycling factor [Roseibium sp. TrichSKD4] Length = 187 Score = 201 bits (512), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 91/179 (50%), Positives = 131/179 (73%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 +DL ++ RM +S LK + LRTGR S SMLD + V+AYG +PLNQV V V EPR Sbjct: 6 VDLDDLSRRMQGALSVLKTEFSGLRTGRASASMLDPISVDAYGQSMPLNQVGTVNVPEPR 65 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ + VWDK MV++VE+ I ESNLGLNP+V+GQ+LR+P+PE +ERR L+KVAH YAE+ Sbjct: 66 MVAIQVWDKGMVSAVEKAIRESNLGLNPVVDGQLLRLPIPELNQERRQELIKVAHKYAEQ 125 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +K+++R++RRDGMD KK+ K G S+D + +++QK+TD+ I +D+ +K++EI Sbjct: 126 AKVAIRHVRRDGMDTAKKAEKDGDISQDDLHVASDEVQKLTDAKIAEVDTMLAKKEQEI 184 >gi|23010622|ref|ZP_00051247.1| COG0233: Ribosome recycling factor [Magnetospirillum magnetotacticum MS-1] Length = 187 Score = 201 bits (510), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 95/182 (52%), Positives = 129/182 (70%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 DL +IK RM +S L KD+ +LRTGR +PS+LD ++VEAYG+ +P+ QVA V+V EPR Sbjct: 6 FDLGDIKRRMQGAVSSLSKDLGSLRTGRATPSLLDPIQVEAYGASMPMAQVATVSVPEPR 65 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 +L +SVWD+ MV +VE+ I ES+LGLNP+ EGQ +R+ +PE E+RR +VKVAH YAE+ Sbjct: 66 LLSISVWDRSMVTNVEKAIRESDLGLNPMTEGQTIRLRIPEMNEQRRKEMVKVAHKYAEE 125 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++++VR++RRDG+D LKK K G SED D+QK TD I ID K+KEIM Sbjct: 126 ARVAVRHVRRDGLDILKKLEKDGAISEDDEKRQAGDVQKATDDAIAEIDGVLASKEKEIM 185 Query: 185 HF 186 Sbjct: 186 QV 187 >gi|328543714|ref|YP_004303823.1| ribosome-recycling factor [polymorphum gilvum SL003B-26A1] gi|326413458|gb|ADZ70521.1| Ribosome-recycling factor [Polymorphum gilvum SL003B-26A1] Length = 173 Score = 201 bits (510), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 92/170 (54%), Positives = 125/170 (73%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M +S LK ++ LRTGR S SM+D + V AYG +P+NQVA V+V EPRM+ V VWDK Sbjct: 1 MQGALSVLKTELAGLRTGRASSSMMDAIVVNAYGQSMPINQVATVSVPEPRMVAVQVWDK 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 MV +VER I ESNLGLNP+V+GQ+LR+P+PE +ERR L+KVAH YAE++K+++R++R Sbjct: 61 SMVGAVERAIRESNLGLNPVVDGQLLRLPIPELNQERRQELIKVAHKYAEQAKVAIRHVR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 RDGMD +KK K G S+D +D+QK+TD I +DS E+K++EI Sbjct: 121 RDGMDMIKKLEKDGAISQDDSRVAADDVQKLTDREIAEVDSMLEKKQQEI 170 >gi|121602369|ref|YP_988895.1| ribosome recycling factor [Bartonella bacilliformis KC583] gi|48474236|sp|Q8RT64|RRF_BARBK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|18920725|gb|AAL82407.1|AF469610_3 ribosome recycling factor [Bartonella bacilliformis] gi|120614546|gb|ABM45147.1| ribosome recycling factor [Bartonella bacilliformis KC583] Length = 186 Score = 200 bits (509), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 97/179 (54%), Positives = 128/179 (71%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + ++K RM IS K ++ LRTGR S S+L+ + VEAYGS VP+ QVAN++VLEPRML Sbjct: 7 MDDLKRRMDGAISAFKHELSGLRTGRASASLLEPLTVEAYGSVVPIKQVANISVLEPRML 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VSVWDK MV +VER I + GLNPIV+G LRIP+PE EERR LVK+AH YAE+++ Sbjct: 67 SVSVWDKTMVGAVERAIRDCGFGLNPIVDGMNLRIPLPELNEERRKELVKIAHQYAEQAR 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +++R++RRDGMD+LKK K G+ S+D SL +QK+TD I +ID K+ EIM Sbjct: 127 VAIRHVRRDGMDNLKKLEKEGEISQDEARSLSEKVQKLTDDAIADIDKILIMKETEIMQ 185 >gi|110633737|ref|YP_673945.1| ribosome recycling factor [Mesorhizobium sp. BNC1] gi|123353709|sp|Q11IJ5|RRF_MESSB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|110284721|gb|ABG62780.1| ribosome recycling factor [Chelativorans sp. BNC1] Length = 186 Score = 200 bits (508), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 93/184 (50%), Positives = 130/184 (70%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M ID +++ R I+ K D+ +LRTGR S ++LD + V+AYG+ +P+NQVA V+V Sbjct: 1 MPDGIDFKDLHRRFDGAIAAFKHDIASLRTGRASANLLDPIHVDAYGASMPVNQVATVSV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPRM+ VSVWD+ +V +V+R I E+NLG NPIVEG LRIP+PE EERR LVK+AH Sbjct: 61 PEPRMISVSVWDQSLVGAVDRAIREANLGFNPIVEGSTLRIPLPELNEERRKELVKIAHQ 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE ++++ R++RRDGM+HLKK+ K G+ S+D + +QK+TD TI ID EK+ Sbjct: 121 YAEHARVAARHVRRDGMEHLKKAEKDGEISQDEARVQSDRVQKMTDETIAAIDKLLAEKE 180 Query: 181 KEIM 184 EI+ Sbjct: 181 VEIL 184 >gi|85716993|ref|ZP_01047956.1| ribosome recycling factor [Nitrobacter sp. Nb-311A] gi|85696195|gb|EAQ34090.1| ribosome recycling factor [Nitrobacter sp. Nb-311A] Length = 187 Score = 199 bits (507), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 99/180 (55%), Positives = 128/180 (71%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D+ ++K RM LK ++ LRTGR S SMLD V+V+AYGSH+PLNQVA ++V EPR Sbjct: 6 FDIGDLKRRMQGATQSLKHELGGLRTGRASASMLDPVQVDAYGSHMPLNQVATISVPEPR 65 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 +L V VWDK MV +VE+ I +SNLGL+P EGQVLR+ +PE EERR LVKVAH YAE Sbjct: 66 LLSVQVWDKSMVKAVEKAIVDSNLGLSPATEGQVLRLRIPELNEERRKELVKVAHKYAEA 125 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +K++VR++RRDG+D LKK K+ + SED L N++QK TD I ID K+KEI+ Sbjct: 126 AKVAVRHVRRDGLDTLKKLEKTHEISEDDEKRLANEVQKATDGVISEIDQLLAGKEKEIL 185 >gi|114704873|ref|ZP_01437781.1| ribosome releasing factor [Fulvimarina pelagi HTCC2506] gi|114539658|gb|EAU42778.1| ribosome releasing factor [Fulvimarina pelagi HTCC2506] Length = 185 Score = 199 bits (505), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 93/181 (51%), Positives = 125/181 (69%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D ++K RM I K D+ LRTGR SP++LD V V+AYG+ +P+NQVAN++V EPR Sbjct: 4 FDFDDLKRRMDGAIQSFKGDLAGLRTGRASPNLLDPVMVDAYGTQMPVNQVANISVPEPR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 ++ V+VWDK+MV VER I ESNLGLNP+ +G LRIP+PE E+RR LVKVA YAE+ Sbjct: 64 LVSVTVWDKQMVGKVERAIRESNLGLNPVTDGTTLRIPLPELNEQRRKELVKVAQQYAEQ 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +K++VR++RRDGMD LKK K G +D + +QK+TD + ID K++EIM Sbjct: 124 AKVAVRHVRRDGMDSLKKMEKDGDIGQDDNRQMSERVQKMTDDAVSEIDRTLATKEQEIM 183 Query: 185 H 185 Sbjct: 184 Q 184 >gi|49475413|ref|YP_033454.1| ribosome recycling factor [Bartonella henselae str. Houston-1] gi|60390254|sp|Q6G5C6|RRF_BARHE RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|49238219|emb|CAF27429.1| Ribosome recycling factor [Bartonella henselae str. Houston-1] Length = 186 Score = 198 bits (504), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 97/180 (53%), Positives = 127/180 (70%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + ++K RM IS K ++ LRTGR S S+L+ + VEAYGS V +NQVAN++V EPRML Sbjct: 7 MDDLKRRMHGAISAFKHELGGLRTGRASASLLEPLTVEAYGSVVHINQVANISVPEPRML 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VSVWDK MV +VER I +S LGLNPI +G LRIP+PE EERR LVK+AH YAE+++ Sbjct: 67 SVSVWDKTMVGAVERAIRDSGLGLNPITDGMNLRIPLPELNEERRKELVKIAHQYAEQAR 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++ R++RRDGMD+LKK K G+ +D L +QK+TD TI +ID K+ EIMH Sbjct: 127 VATRHVRRDGMDNLKKLEKEGEIGQDEAHGLSEKVQKLTDETIADIDKILAVKESEIMHV 186 >gi|316933924|ref|YP_004108906.1| ribosome recycling factor [Rhodopseudomonas palustris DX-1] gi|315601638|gb|ADU44173.1| ribosome recycling factor [Rhodopseudomonas palustris DX-1] Length = 186 Score = 198 bits (504), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 97/184 (52%), Positives = 132/184 (71%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ D+ +K RM LK ++ LRTGR S SML+ V+V+AYGSH+PLNQVA V+V Sbjct: 1 MSDKFDINELKRRMQGAAQSLKHELGGLRTGRASASMLEPVQVDAYGSHMPLNQVATVSV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPR++ V VWDK MV +VE+GI +SNLGL+P EGQV+R+ +PE EERR LVKVAH Sbjct: 61 PEPRLISVQVWDKSMVKAVEKGIVDSNLGLSPATEGQVIRLRIPELNEERRKELVKVAHK 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE ++++VR++RRDG+D +KK K+ + SED L+ ++QK TD+TI ID K+ Sbjct: 121 YAEAARVAVRHVRRDGLDTIKKLEKAHEISEDDQKRLDTEVQKATDATIGEIDQLLANKE 180 Query: 181 KEIM 184 KEI+ Sbjct: 181 KEIL 184 >gi|27379969|ref|NP_771498.1| ribosome recycling factor [Bradyrhizobium japonicum USDA 110] gi|34924950|sp|Q89KP6|RRF_BRAJA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|27353122|dbj|BAC50123.1| ribosome recycling factor [Bradyrhizobium japonicum USDA 110] Length = 188 Score = 198 bits (503), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 98/180 (54%), Positives = 128/180 (71%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 DL +K RM + LK ++ LRTGR S SMLD V+VEAYGSH+PLNQ+A V+V EPR Sbjct: 7 FDLNEVKRRMQGAVQSLKHELGGLRTGRASASMLDPVQVEAYGSHMPLNQLATVSVPEPR 66 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 ++ V VWDK MV +VE+ I +SNLGL+P EGQVLR+ +PE EERR LVKVAH YAE Sbjct: 67 LISVQVWDKSMVKAVEKAIVDSNLGLSPATEGQVLRLRIPELNEERRKELVKVAHKYAEA 126 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +K++ R++RRDG+D LKK K+ + SED +++QK+TD TI ID K+KEI+ Sbjct: 127 AKVAARHVRRDGLDVLKKLEKNHEMSEDDQKRHADEVQKVTDGTIAEIDQLLAAKEKEIL 186 >gi|240850307|ref|YP_002971700.1| ribosome recycling factor [Bartonella grahamii as4aup] gi|240267430|gb|ACS51018.1| ribosome recycling factor [Bartonella grahamii as4aup] Length = 186 Score = 198 bits (503), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 98/186 (52%), Positives = 130/186 (69%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 MN + ++K RM I+ K ++ LRTGR S S+L+ + VE+YGS V +NQVAN++V Sbjct: 1 MNVTSIMDDLKRRMDGAITAFKHELGGLRTGRASASLLEPLTVESYGSVVHINQVANISV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPRML VSVWDK MV +VER I +S LGLNPI +G LRIP+PE EERR LVK+AH Sbjct: 61 PEPRMLSVSVWDKTMVGAVERAIRDSGLGLNPITDGTNLRIPLPELNEERRKELVKIAHH 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE+++++ R++RRDGMD+LKK K G+ +D SL +QK+TD TI +ID K+ Sbjct: 121 YAEQARVATRHVRRDGMDNLKKLEKDGEIGQDEAHSLSEKVQKLTDETIADIDKILAVKE 180 Query: 181 KEIMHF 186 EIMH Sbjct: 181 SEIMHV 186 >gi|94496939|ref|ZP_01303513.1| ribosome recycling factor [Sphingomonas sp. SKA58] gi|94423615|gb|EAT08642.1| ribosome recycling factor [Sphingomonas sp. SKA58] Length = 185 Score = 197 bits (502), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 94/179 (52%), Positives = 125/179 (69%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 D +++ RM + LK D+ LRTGR + +LD V VE YG+H+PLNQVA V+ EPRM Sbjct: 5 DKADLERRMAGAVESLKGDLTGLRTGRANVQLLDPVTVEVYGAHMPLNQVATVSAPEPRM 64 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 L V VWDK V ++ I + LGLNPIV+GQ LR+P+P+ TEERR L K+A YAE + Sbjct: 65 LSVQVWDKSNVGPCDKAIRSAGLGLNPIVDGQTLRLPIPDLTEERRKELAKLASKYAEGA 124 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++VRN+RRDGMD+LK K G+ SED LE ++QK+TDSTI +IDS K+KEI+ Sbjct: 125 RVAVRNVRRDGMDNLKADEKKGEISEDERKRLETEVQKLTDSTIADIDSVTSAKEKEIL 183 >gi|319408398|emb|CBI82053.1| Ribosome recycling factor [Bartonella schoenbuchensis R1] Length = 186 Score = 197 bits (501), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 96/185 (51%), Positives = 129/185 (69%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 MN + ++K RM +S K ++ LRTGR S S+L+ + VEAYGS VP+ QVAN++V Sbjct: 1 MNVTSMMDDLKRRMDGAVSAFKHELSGLRTGRASASLLEPLTVEAYGSTVPIQQVANISV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPRML VSVWDK MV +VER I +S LG NPI +G LRIP+PE EERR LVK+AH Sbjct: 61 PEPRMLSVSVWDKTMVGAVERAIRDSGLGFNPITDGMNLRIPIPELNEERRKELVKIAHQ 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE+++++ R++RRDGMD+LKK K G+ S+D +L +QK+TD TI +ID K+ Sbjct: 121 YAEQARVAARHVRRDGMDNLKKLEKEGEISQDESRNLSEKVQKLTDETITDIDKILGVKE 180 Query: 181 KEIMH 185 +IM Sbjct: 181 ADIMQ 185 >gi|163868104|ref|YP_001609308.1| ribosome recycling factor [Bartonella tribocorum CIP 105476] gi|189044045|sp|A9ISK9|RRF_BART1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|161017755|emb|CAK01313.1| Ribosome recycling factor [Bartonella tribocorum CIP 105476] Length = 186 Score = 197 bits (500), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 98/185 (52%), Positives = 129/185 (69%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 MN + ++K RM I K ++ LRTGR S S+L+ + VE+YGS V +NQVAN++V Sbjct: 1 MNVASIMDDLKRRMDGAIVAFKHELGGLRTGRASASLLEPLTVESYGSVVHINQVANISV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPRML VSVWDK MV +VER I +S LGLNPI +G LRIP+PE EERR LVK+AH Sbjct: 61 PEPRMLFVSVWDKTMVGAVERAIRDSGLGLNPITDGTNLRIPLPELNEERRKELVKIAHH 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE+++++ R++RRDGMD+LKK K G+ +D SL +QK+TD TI +ID K+ Sbjct: 121 YAEQARVATRHVRRDGMDNLKKLEKDGEIGQDEAHSLSEKVQKLTDETIADIDKILAVKE 180 Query: 181 KEIMH 185 EIMH Sbjct: 181 SEIMH 185 >gi|302383605|ref|YP_003819428.1| ribosome recycling factor [Brevundimonas subvibrioides ATCC 15264] gi|302194233|gb|ADL01805.1| ribosome recycling factor [Brevundimonas subvibrioides ATCC 15264] Length = 185 Score = 197 bits (500), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 96/181 (53%), Positives = 126/181 (69%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 DL+ +DRM ++ LK++ LRTGR + +LD V+V+AYGS PLN VA ++V EPRM Sbjct: 5 DLKTYRDRMDRAVTSLKEEFQGLRTGRANAGLLDPVQVQAYGSTSPLNAVAAISVPEPRM 64 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 + VSVWDK MV VE+ I + LGLNPIV+GQ LRIPVP TEERR L K+A YAE+ Sbjct: 65 ISVSVWDKSMVGPVEKAIRAAGLGLNPIVDGQTLRIPVPPLTEERRKELAKLAGKYAEQQ 124 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 KI+VRN+RRD D LKK+ K+G+ S+D +E ++QK TD+ IK ID + K+ EIM Sbjct: 125 KIAVRNVRRDANDDLKKAEKAGEISQDDQKKMETEVQKDTDAAIKRIDETLKTKEVEIMQ 184 Query: 186 F 186 Sbjct: 185 V 185 >gi|319899040|ref|YP_004159133.1| Ribosome recycling factor [Bartonella clarridgeiae 73] gi|319403004|emb|CBI76559.1| Ribosome recycling factor [Bartonella clarridgeiae 73] Length = 186 Score = 197 bits (500), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 98/186 (52%), Positives = 129/186 (69%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ + + ++K RM IS + ++ +LRTGR S S+L+ + VEAYGS VP+NQVAN++V Sbjct: 1 MDITLIMDDLKRRMEGAISSFRHELGSLRTGRASASLLEHLTVEAYGSVVPINQVANISV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E RML VSVWDK M+ VER I +S LGLNPI EG LRIP+PE EERR LVK+AH Sbjct: 61 PESRMLSVSVWDKTMIGVVERAIRDSGLGLNPITEGMNLRIPLPELNEERRKELVKIAHQ 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE+++IS R++RRDGMD+LKK K G+ +D SL +QK+TD T+ ID K+ Sbjct: 121 YAEQARISARHVRRDGMDNLKKLEKEGEIGQDEARSLSEKVQKLTDETVAEIDKILVLKE 180 Query: 181 KEIMHF 186 EIM Sbjct: 181 TEIMQV 186 >gi|170749846|ref|YP_001756106.1| ribosome recycling factor [Methylobacterium radiotolerans JCM 2831] gi|190360252|sp|B1LTQ4|RRF_METRJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|170656368|gb|ACB25423.1| ribosome recycling factor [Methylobacterium radiotolerans JCM 2831] Length = 187 Score = 197 bits (500), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 93/181 (51%), Positives = 127/181 (70%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 DL +IK RM ++ L KD+ +LRTGR +PS+LD ++V+AYGS +P+ QVA V+V EPR Sbjct: 6 FDLNDIKRRMQGAVASLSKDLGSLRTGRATPSLLDPIQVDAYGSMMPMAQVATVSVPEPR 65 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 +L +SVWD+ MV +VE+ I ES+LGLNP EGQ +R+ +PE E+RR +VKVAH Y E+ Sbjct: 66 LLSISVWDRSMVTAVEKAIRESDLGLNPQTEGQTIRLRIPEMNEQRRKEMVKVAHKYTEE 125 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++++VR++RRDG+DHLKK K SED D+QK TD I ID K+KEIM Sbjct: 126 ARVAVRHVRRDGLDHLKKLLKDSAISEDDEKRQATDVQKATDQYIAEIDGVLASKEKEIM 185 Query: 185 H 185 Sbjct: 186 Q 186 >gi|188581299|ref|YP_001924744.1| ribosome recycling factor [Methylobacterium populi BJ001] gi|238692901|sp|B1ZLC8|RRF_METPB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|179344797|gb|ACB80209.1| ribosome recycling factor [Methylobacterium populi BJ001] Length = 187 Score = 197 bits (500), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 93/182 (51%), Positives = 128/182 (70%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 DL +IK RM +S L KD+ +LRTGR +PS+LD ++VEAYG+ +P+ QVA V+V EPR Sbjct: 6 FDLGDIKRRMQGAVSSLSKDLGSLRTGRATPSLLDPIQVEAYGASMPMAQVATVSVPEPR 65 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 +L +SVWD+ MV +VE+ I ES+LGLNP+ EGQ +R+ +PE E+RR +VKVAH Y E+ Sbjct: 66 LLSISVWDRSMVTNVEKAIRESDLGLNPMTEGQTIRLRIPEMNEQRRKEMVKVAHKYTEE 125 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++++VR++RRDG+D LKK K G SED ++QK TD I ID K+KEIM Sbjct: 126 ARVAVRHVRRDGLDILKKLEKDGAISEDDEKRQAGEVQKATDDAIAEIDGVLASKEKEIM 185 Query: 185 HF 186 Sbjct: 186 QV 187 >gi|39935984|ref|NP_948260.1| ribosome recycling factor [Rhodopseudomonas palustris CGA009] gi|192291637|ref|YP_001992242.1| ribosome recycling factor [Rhodopseudomonas palustris TIE-1] gi|47116997|sp|P61309|RRF_RHOPA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|229564263|sp|B3Q7K1|RRF_RHOPT RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|39649838|emb|CAE28360.1| ribosome releasing factor [Rhodopseudomonas palustris CGA009] gi|192285386|gb|ACF01767.1| ribosome recycling factor [Rhodopseudomonas palustris TIE-1] Length = 186 Score = 196 bits (499), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 96/184 (52%), Positives = 131/184 (71%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ D+ +K RM LK ++ LRTGR S SML+ V+V+AYGSH+PLNQVA V+V Sbjct: 1 MSDKFDVNELKRRMQGAAQSLKHELGGLRTGRASASMLEPVQVDAYGSHMPLNQVATVSV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPR++ V VWDK MV +VE+GI +SNLGL+P EGQV+R+ +PE EERR LVKVAH Sbjct: 61 PEPRLISVQVWDKSMVKAVEKGIVDSNLGLSPATEGQVIRLRIPELNEERRKELVKVAHK 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE ++++VR++RRDG+D +KK K+ + SED L+ ++QK TD+ I ID K+ Sbjct: 121 YAEAARVAVRHVRRDGLDTIKKLEKAHEISEDDQKRLDQEVQKATDAAIAEIDQLLANKE 180 Query: 181 KEIM 184 KEI+ Sbjct: 181 KEIL 184 >gi|295689595|ref|YP_003593288.1| ribosome recycling factor [Caulobacter segnis ATCC 21756] gi|295431498|gb|ADG10670.1| ribosome recycling factor [Caulobacter segnis ATCC 21756] Length = 188 Score = 196 bits (499), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 97/180 (53%), Positives = 125/180 (69%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +DRM ++ LK++ +LRTGR S S+LD V VEAYGS PLN VA+V+V EPR + Sbjct: 9 LSRYRDRMDKAVAALKEEFGSLRTGRASASLLDQVMVEAYGSTTPLNAVASVSVPEPRQI 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VSVWD+ +V SVE+ I S LGLNP+VEGQ LRIP+P TEERR L K+A YAE+ K Sbjct: 69 NVSVWDRGVVVSVEKAIRASGLGLNPVVEGQNLRIPIPPLTEERRRDLQKIAGKYAEQQK 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I+VRN+RRD D LKK+ K G +ED +E ++QK+TD IK ID + K++EIM Sbjct: 129 IAVRNVRRDANDDLKKAEKDGAIAEDERKKMETEVQKLTDEAIKRIDEALKTKEQEIMQV 188 >gi|92117244|ref|YP_576973.1| ribosome recycling factor [Nitrobacter hamburgensis X14] gi|91800138|gb|ABE62513.1| ribosome recycling factor [Nitrobacter hamburgensis X14] Length = 194 Score = 196 bits (499), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 98/180 (54%), Positives = 127/180 (70%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D+ +K RM I LK ++ LRTGR + SML+ V+VEAYGSH+PLNQVA ++V E R Sbjct: 13 FDINELKRRMQGAIQSLKHELGGLRTGRAAASMLEPVQVEAYGSHMPLNQVATISVPESR 72 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 +L V VWDK MV +VE+ I +SNLGL+P EGQVLR+ +PE EERR LVKVAH YAE Sbjct: 73 LLSVQVWDKSMVKAVEKAIVDSNLGLSPATEGQVLRLRIPELNEERRKELVKVAHKYAEA 132 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +K++VR++RRDG+D +KK K+ + SED L ND+QK TD I ID K+KEI+ Sbjct: 133 AKVAVRHVRRDGLDTIKKLEKNHEISEDDEKRLANDVQKATDGVISEIDELLAGKEKEIL 192 >gi|319407371|emb|CBI81022.1| Ribosome recycling factor [Bartonella sp. 1-1C] Length = 186 Score = 196 bits (498), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 99/185 (53%), Positives = 130/185 (70%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ + + ++K RM IS K ++ +LRTGR S S+L+ + VEAYGS VP+NQVANV+V Sbjct: 1 MDITLIMDDLKRRMEGAISSFKHELGSLRTGRASASLLEHLTVEAYGSVVPINQVANVSV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E RML VSVWDK MV +VER I +S LGLNPI +G LRIP+PE EERR LVK+A+ Sbjct: 61 PESRMLSVSVWDKTMVGAVERAIRDSGLGLNPITDGVNLRIPLPELNEERRKELVKIAYQ 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 Y E+++I+ R++RRDGMD+LKK K GK +D SL +QK+TD+TI ID K+ Sbjct: 121 YTEQARIAARHVRRDGMDNLKKLEKEGKIGQDEARSLSEKVQKLTDTTIAEIDKILVLKE 180 Query: 181 KEIMH 185 EIM Sbjct: 181 TEIMQ 185 >gi|146341066|ref|YP_001206114.1| ribosome recycling factor [Bradyrhizobium sp. ORS278] gi|190360236|sp|A4YVG3|RRF_BRASO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|146193872|emb|CAL77889.1| Ribosome recycling factor (Ribosome-releasing factor) (RRF) [Bradyrhizobium sp. ORS278] Length = 187 Score = 196 bits (498), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 96/180 (53%), Positives = 128/180 (71%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 DL +K RM LK ++ LRTGR S SM++ V+VEAYGSH+PLNQ+A V+V EPR Sbjct: 6 FDLNELKRRMQGATQALKHELGGLRTGRASASMVEPVQVEAYGSHMPLNQLATVSVPEPR 65 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 +L V VWD+ MV +VE+ I +SNLGL+P EGQV+R+ +PE +ERR LVKVAH YAE+ Sbjct: 66 LLSVQVWDRSMVKAVEKAIVDSNLGLSPATEGQVIRLRIPELNQERRKELVKVAHKYAEQ 125 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++++VR++RRDG+D LKK K+ + SED L D+QK TDS I ID K+KEI+ Sbjct: 126 ARVAVRHVRRDGLDTLKKLEKNHEMSEDDQERLAGDVQKATDSVISEIDQLLAAKEKEIL 185 >gi|163851510|ref|YP_001639553.1| ribosome recycling factor [Methylobacterium extorquens PA1] gi|218530317|ref|YP_002421133.1| ribosome recycling factor [Methylobacterium chloromethanicum CM4] gi|240138677|ref|YP_002963149.1| Ribosome recycling factor (Ribosome releasing factor) (RRF) [Methylobacterium extorquens AM1] gi|254561273|ref|YP_003068368.1| Ribosome recycling factor [Methylobacterium extorquens DM4] gi|238687348|sp|A9W4H6|RRF_METEP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|254809519|sp|B7KZH3|RRF_METC4 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|163663115|gb|ABY30482.1| ribosome recycling factor [Methylobacterium extorquens PA1] gi|218522620|gb|ACK83205.1| ribosome recycling factor [Methylobacterium chloromethanicum CM4] gi|240008646|gb|ACS39872.1| Ribosome recycling factor (Ribosome releasing factor) (RRF) [Methylobacterium extorquens AM1] gi|254268551|emb|CAX24508.1| Ribosome recycling factor (Ribosome releasing factor) (RRF) [Methylobacterium extorquens DM4] Length = 187 Score = 196 bits (498), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 93/182 (51%), Positives = 128/182 (70%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 DL +IK RM +S L KD+ +LRTGR +PS+LD ++VEAYGS +P+ QVA V+V EPR Sbjct: 6 FDLGDIKRRMQGAVSSLSKDLGSLRTGRATPSLLDPIQVEAYGSSMPMAQVATVSVPEPR 65 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 +L +SVWD+ MV +VE+ I ES+LGLNP+ EGQ +R+ +PE E+RR +VKVAH Y E+ Sbjct: 66 LLSISVWDRSMVTNVEKAIRESDLGLNPMTEGQTIRLRIPEMNEQRRKEMVKVAHKYTEE 125 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++++VR++RRDG+D LKK K G S+D ++QK TD I ID K+KEIM Sbjct: 126 ARVAVRHVRRDGLDILKKLEKDGAISQDDEKRQAAEVQKATDDAINEIDGVLASKEKEIM 185 Query: 185 HF 186 Sbjct: 186 QV 187 >gi|16126163|ref|NP_420727.1| ribosome recycling factor [Caulobacter crescentus CB15] gi|221234934|ref|YP_002517370.1| ribosome recycling factor [Caulobacter crescentus NA1000] gi|22001950|sp|Q9A706|RRF_CAUCR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|254809500|sp|B8GWS0|RRF_CAUCN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|13423373|gb|AAK23895.1| ribosome recycling factor [Caulobacter crescentus CB15] gi|220964106|gb|ACL95462.1| ribosome Recycling factor (RRF) [Caulobacter crescentus NA1000] Length = 188 Score = 195 bits (496), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 98/180 (54%), Positives = 124/180 (68%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +DRM +S LK++ +LRTGR S S+LD V VEAYGS PLN VA+V+V EPR + Sbjct: 9 LSRYRDRMDKAVSALKEEFGSLRTGRASASLLDQVMVEAYGSTTPLNAVASVSVPEPRQI 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VSVWD+ +V SVE+ I S LGLNP+VEGQ LRIP+P TEERR L K+A YAE+ K Sbjct: 69 NVSVWDRGVVVSVEKAIRASGLGLNPVVEGQNLRIPIPPLTEERRRDLQKIAGKYAEQQK 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I+VRN+RRD D LKK+ K G +ED +E ++QK+TD IK ID + K+ EIM Sbjct: 129 IAVRNVRRDANDDLKKAEKDGAIAEDERKKMETEVQKMTDDAIKRIDEALKTKEHEIMQV 188 >gi|90423939|ref|YP_532309.1| ribosome recycling factor [Rhodopseudomonas palustris BisB18] gi|122476317|sp|Q215E6|RRF_RHOPB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|90105953|gb|ABD87990.1| ribosome recycling factor [Rhodopseudomonas palustris BisB18] Length = 187 Score = 195 bits (496), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 95/180 (52%), Positives = 129/180 (71%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D+ +K RM LK ++ LRTGR + SML+ V+VEAYGSH+PLNQ+A V+V EPR Sbjct: 6 FDINELKRRMQGATQSLKHELGGLRTGRAAASMLEPVQVEAYGSHMPLNQLATVSVPEPR 65 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 +L V VWD+ MV +VE+ I +SNLGL+P EGQVLR+ +PE EERR LVKVAH YAE Sbjct: 66 LLSVQVWDRSMVKAVEKAIVDSNLGLSPATEGQVLRLRIPELNEERRKELVKVAHKYAEA 125 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++++VR++RRDG+D LKK K+ + SED L +++QK TD+TI +D K+KEI+ Sbjct: 126 TRVAVRHVRRDGLDTLKKLEKNSEISEDDQERLAHEVQKATDATILEVDQLLAAKEKEIL 185 >gi|23502037|ref|NP_698164.1| ribosome recycling factor [Brucella suis 1330] gi|62290072|ref|YP_221865.1| ribosome recycling factor [Brucella abortus bv. 1 str. 9-941] gi|82699998|ref|YP_414572.1| ribosome recycling factor [Brucella melitensis biovar Abortus 2308] gi|148560306|ref|YP_001259077.1| ribosome recycling factor [Brucella ovis ATCC 25840] gi|161619110|ref|YP_001592997.1| ribosome recycling factor [Brucella canis ATCC 23365] gi|163843423|ref|YP_001627827.1| ribosome recycling factor [Brucella suis ATCC 23445] gi|189024311|ref|YP_001935079.1| ribosome recycling factor [Brucella abortus S19] gi|237815578|ref|ZP_04594575.1| ribosome recycling factor [Brucella abortus str. 2308 A] gi|254689382|ref|ZP_05152636.1| ribosome recycling factor [Brucella abortus bv. 6 str. 870] gi|254693866|ref|ZP_05155694.1| ribosome recycling factor [Brucella abortus bv. 3 str. Tulya] gi|254697517|ref|ZP_05159345.1| ribosome recycling factor [Brucella abortus bv. 2 str. 86/8/59] gi|254701900|ref|ZP_05163728.1| ribosome recycling factor [Brucella suis bv. 5 str. 513] gi|254704445|ref|ZP_05166273.1| ribosome recycling factor [Brucella suis bv. 3 str. 686] gi|254706659|ref|ZP_05168487.1| ribosome recycling factor [Brucella pinnipedialis M163/99/10] gi|254710233|ref|ZP_05172044.1| ribosome recycling factor [Brucella pinnipedialis B2/94] gi|254714229|ref|ZP_05176040.1| ribosome recycling factor [Brucella ceti M644/93/1] gi|254717665|ref|ZP_05179476.1| ribosome recycling factor [Brucella ceti M13/05/1] gi|254719221|ref|ZP_05181032.1| ribosome recycling factor [Brucella sp. 83/13] gi|254730412|ref|ZP_05188990.1| ribosome recycling factor [Brucella abortus bv. 4 str. 292] gi|256031727|ref|ZP_05445341.1| ribosome recycling factor [Brucella pinnipedialis M292/94/1] gi|256061240|ref|ZP_05451391.1| ribosome recycling factor [Brucella neotomae 5K33] gi|256159893|ref|ZP_05457615.1| ribosome recycling factor [Brucella ceti M490/95/1] gi|256255127|ref|ZP_05460663.1| ribosome recycling factor [Brucella ceti B1/94] gi|256257628|ref|ZP_05463164.1| ribosome recycling factor [Brucella abortus bv. 9 str. C68] gi|256369584|ref|YP_003107094.1| ribosome releasing factor [Brucella microti CCM 4915] gi|260546622|ref|ZP_05822361.1| ribosome recycling factor [Brucella abortus NCTC 8038] gi|260566308|ref|ZP_05836778.1| ribosome recycling factor [Brucella suis bv. 4 str. 40] gi|260754900|ref|ZP_05867248.1| ribosome recycling factor [Brucella abortus bv. 6 str. 870] gi|260758117|ref|ZP_05870465.1| ribosome recycling factor [Brucella abortus bv. 4 str. 292] gi|260761943|ref|ZP_05874286.1| ribosome recycling factor [Brucella abortus bv. 2 str. 86/8/59] gi|260883912|ref|ZP_05895526.1| ribosome recycling factor [Brucella abortus bv. 9 str. C68] gi|261214152|ref|ZP_05928433.1| ribosome recycling factor [Brucella abortus bv. 3 str. Tulya] gi|261219506|ref|ZP_05933787.1| ribosome recycling factor [Brucella ceti M13/05/1] gi|261222325|ref|ZP_05936606.1| ribosome recycling factor [Brucella ceti B1/94] gi|261314119|ref|ZP_05953316.1| ribosome recycling factor [Brucella pinnipedialis M163/99/10] gi|261317792|ref|ZP_05956989.1| ribosome recycling factor [Brucella pinnipedialis B2/94] gi|261322001|ref|ZP_05961198.1| ribosome recycling factor [Brucella ceti M644/93/1] gi|261325248|ref|ZP_05964445.1| ribosome recycling factor [Brucella neotomae 5K33] gi|261752464|ref|ZP_05996173.1| ribosome recycling factor [Brucella suis bv. 5 str. 513] gi|261755123|ref|ZP_05998832.1| ribosome recycling factor [Brucella suis bv. 3 str. 686] gi|265984216|ref|ZP_06096951.1| ribosome recycling factor [Brucella sp. 83/13] gi|265988823|ref|ZP_06101380.1| ribosome recycling factor [Brucella pinnipedialis M292/94/1] gi|265998289|ref|ZP_06110846.1| ribosome recycling factor [Brucella ceti M490/95/1] gi|294852498|ref|ZP_06793171.1| ribosome recycling factor [Brucella sp. NVSL 07-0026] gi|297248470|ref|ZP_06932188.1| ribosome recycling factor [Brucella abortus bv. 5 str. B3196] gi|306837970|ref|ZP_07470828.1| ribosome recycling factor [Brucella sp. NF 2653] gi|306841882|ref|ZP_07474562.1| ribosome recycling factor [Brucella sp. BO2] gi|34924970|sp|Q8G0D8|RRF_BRUSU RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|75496735|sp|Q57CY0|RRF_BRUAB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|123547502|sp|Q2YRP7|RRF_BRUA2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166230414|sp|A5VQT0|RRF_BRUO2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|189044046|sp|A9M5H1|RRF_BRUC2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|189044047|sp|B0CGV6|RRF_BRUSI RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238689377|sp|B2S608|RRF_BRUA1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|23347991|gb|AAN30079.1| ribosome recycling factor [Brucella suis 1330] gi|62196204|gb|AAX74504.1| Frr, ribosome recycling factor [Brucella abortus bv. 1 str. 9-941] gi|82616099|emb|CAJ11137.1| Ribosome recycling factor [Brucella melitensis biovar Abortus 2308] gi|148371563|gb|ABQ61542.1| ribosome recycling factor [Brucella ovis ATCC 25840] gi|161335921|gb|ABX62226.1| ribosome recycling factor [Brucella canis ATCC 23365] gi|163674146|gb|ABY38257.1| ribosome recycling factor [Brucella suis ATCC 23445] gi|189019883|gb|ACD72605.1| Ribosome recycling factor [Brucella abortus S19] gi|237788876|gb|EEP63087.1| ribosome recycling factor [Brucella abortus str. 2308 A] gi|255999746|gb|ACU48145.1| ribosome releasing factor [Brucella microti CCM 4915] gi|260095672|gb|EEW79549.1| ribosome recycling factor [Brucella abortus NCTC 8038] gi|260155826|gb|EEW90906.1| ribosome recycling factor [Brucella suis bv. 4 str. 40] gi|260668435|gb|EEX55375.1| ribosome recycling factor [Brucella abortus bv. 4 str. 292] gi|260672375|gb|EEX59196.1| ribosome recycling factor [Brucella abortus bv. 2 str. 86/8/59] gi|260675008|gb|EEX61829.1| ribosome recycling factor [Brucella abortus bv. 6 str. 870] gi|260873440|gb|EEX80509.1| ribosome recycling factor [Brucella abortus bv. 9 str. C68] gi|260915759|gb|EEX82620.1| ribosome recycling factor [Brucella abortus bv. 3 str. Tulya] gi|260920909|gb|EEX87562.1| ribosome recycling factor [Brucella ceti B1/94] gi|260924595|gb|EEX91163.1| ribosome recycling factor [Brucella ceti M13/05/1] gi|261294691|gb|EEX98187.1| ribosome recycling factor [Brucella ceti M644/93/1] gi|261297015|gb|EEY00512.1| ribosome recycling factor [Brucella pinnipedialis B2/94] gi|261301228|gb|EEY04725.1| ribosome recycling factor [Brucella neotomae 5K33] gi|261303145|gb|EEY06642.1| ribosome recycling factor [Brucella pinnipedialis M163/99/10] gi|261742217|gb|EEY30143.1| ribosome recycling factor [Brucella suis bv. 5 str. 513] gi|261744876|gb|EEY32802.1| ribosome recycling factor [Brucella suis bv. 3 str. 686] gi|262552757|gb|EEZ08747.1| ribosome recycling factor [Brucella ceti M490/95/1] gi|264661020|gb|EEZ31281.1| ribosome recycling factor [Brucella pinnipedialis M292/94/1] gi|264662808|gb|EEZ33069.1| ribosome recycling factor [Brucella sp. 83/13] gi|294821087|gb|EFG38086.1| ribosome recycling factor [Brucella sp. NVSL 07-0026] gi|297175639|gb|EFH34986.1| ribosome recycling factor [Brucella abortus bv. 5 str. B3196] gi|306288012|gb|EFM59414.1| ribosome recycling factor [Brucella sp. BO2] gi|306406894|gb|EFM63115.1| ribosome recycling factor [Brucella sp. NF 2653] Length = 186 Score = 194 bits (494), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 95/186 (51%), Positives = 126/186 (67%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ D+ ++K RM ++ LK D+ LRTGR S S+L+ + +EAYGS +P+NQVAN++V Sbjct: 1 MSDAFDINDLKRRMEGAVNALKHDLGGLRTGRASASLLEPITIEAYGSTMPINQVANISV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E RML VSVWDK MV +VER I +S LGLNPI +G LRIP+PE E+RR LVK+AH Sbjct: 61 PESRMLSVSVWDKSMVGAVERAIRDSGLGLNPITDGMTLRIPLPELNEQRRKELVKIAHQ 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE+ +I+ R++RRDGMD LKK K S+D L +QK+TD TI +D K+ Sbjct: 121 YAEQGRIAARHVRRDGMDQLKKLEKDSVISQDESRVLSEKVQKLTDDTIAEMDKIVAVKE 180 Query: 181 KEIMHF 186 EIM Sbjct: 181 GEIMQV 186 >gi|319404368|emb|CBI77971.1| Ribosome recycling factor [Bartonella rochalimae ATCC BAA-1498] Length = 186 Score = 194 bits (494), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 98/185 (52%), Positives = 129/185 (69%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ + + ++K RM IS K ++ +LRTGR S S+L+ + VEAYGS VP+NQVAN++V Sbjct: 1 MDITLIMDDLKRRMEGAISSFKHELGSLRTGRASASLLEHLTVEAYGSIVPINQVANISV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E RML VSVWDK MV +VER I +S LGLNPI +G LRIP+PE EERR LVK+A+ Sbjct: 61 PESRMLSVSVWDKTMVGAVERAIRDSGLGLNPITDGVNLRIPLPELNEERRKELVKIAYQ 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 Y E+++I+ R++RRDGMD+LKK K GK +D SL +QK+TD TI ID K+ Sbjct: 121 YTEQARIAARHVRRDGMDNLKKLEKEGKIGQDEARSLSEKVQKLTDETIAEIDKILVLKE 180 Query: 181 KEIMH 185 EIM Sbjct: 181 TEIMQ 185 >gi|170738972|ref|YP_001767627.1| ribosome recycling factor [Methylobacterium sp. 4-46] gi|190360253|sp|B0UPZ4|RRF_METS4 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|168193246|gb|ACA15193.1| ribosome recycling factor [Methylobacterium sp. 4-46] Length = 187 Score = 194 bits (494), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 90/182 (49%), Positives = 131/182 (71%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 DL +IK RM ++ LK D+ +LRTGR SP++LD ++VEAYG+ +P+ QVA ++V EPR Sbjct: 6 FDLADIKRRMQGAVNSLKHDLGSLRTGRASPTLLDPIQVEAYGAAMPMAQVATISVPEPR 65 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 +L V+VWD+ MV++VE+ I ES+LGLNP+ EGQ +R+ +PE E+RR +VKVAH YAE+ Sbjct: 66 LLSVAVWDRGMVSAVEKAIRESDLGLNPMTEGQTIRLRIPEMNEQRRKEMVKVAHKYAEE 125 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++++VR++RRDG+D LKK K G S+D + +QK+TD I +D K+KEIM Sbjct: 126 ARVAVRHVRRDGLDLLKKLEKDGAISQDDEKRQADQVQKVTDQHIAEVDQTLAAKEKEIM 185 Query: 185 HF 186 Sbjct: 186 QV 187 >gi|239832046|ref|ZP_04680375.1| ribosome recycling factor [Ochrobactrum intermedium LMG 3301] gi|239824313|gb|EEQ95881.1| ribosome recycling factor [Ochrobactrum intermedium LMG 3301] Length = 186 Score = 194 bits (494), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 97/186 (52%), Positives = 126/186 (67%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ D+ ++K RM I+ LK D+ LRTGR S S+L+ + +EAYGS +P+NQVAN+TV Sbjct: 1 MSDAFDINDLKRRMEGAINSLKHDLGGLRTGRASASLLEPIVIEAYGSTMPINQVANITV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E RML VSVWDK MV +VER I +S LGLNPI +G LRIP+PE E+RR LVK+AH Sbjct: 61 PESRMLSVSVWDKSMVGAVERAIRDSGLGLNPITDGTTLRIPLPELNEQRRKELVKIAHQ 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE+ +I+ R++RRDGMD LKK K S+D L +QK+TD TI +D K+ Sbjct: 121 YAEQGRIAARHVRRDGMDTLKKLEKDSLISQDDSRVLSEKVQKLTDETIAEMDKIVAVKE 180 Query: 181 KEIMHF 186 EIM Sbjct: 181 GEIMQV 186 >gi|163795639|ref|ZP_02189605.1| Ribosome recycling factor [alpha proteobacterium BAL199] gi|159179238|gb|EDP63771.1| Ribosome recycling factor [alpha proteobacterium BAL199] Length = 185 Score = 194 bits (494), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 92/181 (50%), Positives = 129/181 (71%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 +DL +I+ RM + L+ + LRTGR S S+L+ + VEAYGS +PLNQVA ++V EPR Sbjct: 4 LDLDDIERRMDGAVVALRAEFSGLRTGRASASLLEPIHVEAYGSRMPLNQVATISVPEPR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ V VWD+ M +VE+ I ES+LGLNP +GQ++R+P+P+ +EERR LVKVA YAE Sbjct: 64 MISVQVWDRAMSKAVEKAIRESDLGLNPQSDGQLIRVPLPDLSEERRTELVKVASKYAES 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++++VRN+RRDGMDHLKK+ K G S+D E++IQ+ TD +K ID K+K+IM Sbjct: 124 ARVAVRNVRRDGMDHLKKAEKDGDVSQDERRLYEDEIQEQTDKHVKAIDEALASKEKDIM 183 Query: 185 H 185 Sbjct: 184 Q 184 >gi|254420584|ref|ZP_05034308.1| ribosome recycling factor [Brevundimonas sp. BAL3] gi|196186761|gb|EDX81737.1| ribosome recycling factor [Brevundimonas sp. BAL3] Length = 185 Score = 194 bits (493), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 96/181 (53%), Positives = 128/181 (70%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 +++ +DRM + LK++ LRTGR + +L+ V+VEAYGS PL+ VA ++V EPRM Sbjct: 5 EVKTYRDRMEKAVVALKEEFSGLRTGRANAGLLEPVRVEAYGSASPLSAVAAISVPEPRM 64 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 + V+VWDK MV +VE+ I +NLGLNPIV+GQ LRIPVP TEERR LVK+A Y E+ Sbjct: 65 ISVNVWDKGMVVAVEKAIRNANLGLNPIVDGQTLRIPVPPLTEERRKDLVKLAGKYTEQQ 124 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 KI+VRN+RRD D LKK+ K+G+ S+D LE DIQK TD+ IK ID + K++EIM Sbjct: 125 KIAVRNVRRDANDDLKKAEKAGEISQDEQKKLEADIQKETDAAIKRIDEALKTKEQEIMQ 184 Query: 186 F 186 Sbjct: 185 V 185 >gi|225627627|ref|ZP_03785664.1| ribosome recycling factor [Brucella ceti str. Cudo] gi|260168860|ref|ZP_05755671.1| ribosome recycling factor [Brucella sp. F5/99] gi|261758348|ref|ZP_06002057.1| ribosome recycling factor [Brucella sp. F5/99] gi|225617632|gb|EEH14677.1| ribosome recycling factor [Brucella ceti str. Cudo] gi|261738332|gb|EEY26328.1| ribosome recycling factor [Brucella sp. F5/99] Length = 186 Score = 194 bits (493), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 95/186 (51%), Positives = 126/186 (67%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ D+ ++K RM ++ LK D+ LRTGR S S+L+ + +EAYGS +P+NQVAN++V Sbjct: 1 MSDAFDINDLKRRMEGAVNALKHDLGGLRTGRASASLLEPITIEAYGSTMPINQVANISV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E RML VSVWDK MV +VER I +S LGLNPI +G LRIP+PE E+RR LVK+AH Sbjct: 61 PESRMLSVSVWDKSMVGAVERAIRDSGLGLNPITDGMTLRIPLPELNEQRRKELVKIAHR 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE+ +I+ R++RRDGMD LKK K S+D L +QK+TD TI +D K+ Sbjct: 121 YAEQGRIAARHVRRDGMDQLKKLEKDSVISQDESRVLSEKVQKLTDDTIAEMDKIVAVKE 180 Query: 181 KEIMHF 186 EIM Sbjct: 181 GEIMQV 186 >gi|306844023|ref|ZP_07476618.1| ribosome recycling factor [Brucella sp. BO1] gi|306275778|gb|EFM57502.1| ribosome recycling factor [Brucella sp. BO1] Length = 186 Score = 194 bits (493), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 94/186 (50%), Positives = 126/186 (67%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ D+ ++K RM ++ LK D+ LRTGR S S+L+ + +EAYGS +P+NQ+AN++V Sbjct: 1 MSDAFDINDLKRRMEGAVNALKHDLGGLRTGRASASLLEPITIEAYGSTMPINQIANISV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E RML VSVWDK MV +VER I +S LGLNPI +G LRIP+PE E+RR LVK+AH Sbjct: 61 PESRMLSVSVWDKSMVGAVERAIRDSGLGLNPITDGMTLRIPLPELNEQRRKELVKIAHQ 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE+ +I+ R++RRDGMD LKK K S+D L +QK+TD TI +D K+ Sbjct: 121 YAEQGRIAARHVRRDGMDQLKKLEKDSVISQDESRVLSEKVQKLTDDTIAEMDKIVAVKE 180 Query: 181 KEIMHF 186 EIM Sbjct: 181 GEIMQV 186 >gi|158423320|ref|YP_001524612.1| ribosome recycling factor [Azorhizobium caulinodans ORS 571] gi|172047942|sp|A8I468|RRF_AZOC5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|158330209|dbj|BAF87694.1| ribosome recycling factor [Azorhizobium caulinodans ORS 571] Length = 186 Score = 194 bits (493), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 95/184 (51%), Positives = 127/184 (69%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M D+ +IK RM ++ LK+++ LRTGR S S+L+ + V+AYG+++PL QVA V+V Sbjct: 1 MTTAFDIADIKRRMAGAVTSLKQELGGLRTGRASASLLEPITVDAYGANMPLAQVATVSV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPR+L V VWD+ MV +VE+ I +SNLGLNP EGQ LRI +PE EERR LVKVAH Sbjct: 61 PEPRLLSVQVWDRGMVNAVEKAIRDSNLGLNPNTEGQTLRIRIPELNEERRKELVKVAHK 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE ++++VR++RRDGMD LKK K S D + L D+QK TD TI +D K+ Sbjct: 121 YAEAARVAVRHVRRDGMDLLKKLEKDSAISSDDMERLSKDVQKATDETISEVDQTLAHKE 180 Query: 181 KEIM 184 KEI+ Sbjct: 181 KEIL 184 >gi|148255867|ref|YP_001240452.1| ribosome recycling factor [Bradyrhizobium sp. BTAi1] gi|190360235|sp|A5EK52|RRF_BRASB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|146408040|gb|ABQ36546.1| ribosome recycling factor [Bradyrhizobium sp. BTAi1] Length = 187 Score = 194 bits (493), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 96/180 (53%), Positives = 127/180 (70%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 DL +K RM LK ++ LRTGR S SM++ V+VEAYGSH+PLNQ+A V+V EPR Sbjct: 6 FDLNELKRRMQGATQALKHELGGLRTGRASASMVEPVQVEAYGSHMPLNQLATVSVPEPR 65 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 +L V VWD+ MV +VE+ I +SNLGL+P EGQV+R+ +PE +ERR LVKVAH YAE Sbjct: 66 LLSVQVWDRTMVKAVEKAIVDSNLGLSPATEGQVIRLRIPELNQERRKELVKVAHKYAEA 125 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++++VR++RRDG+D +KK K+ + SED L DIQK TDS I ID K+KEI+ Sbjct: 126 ARVAVRHVRRDGLDTVKKLEKNHEISEDDQERLATDIQKATDSVISEIDQLLAAKEKEIL 185 >gi|220921531|ref|YP_002496832.1| ribosome recycling factor [Methylobacterium nodulans ORS 2060] gi|254809520|sp|B8INK3|RRF_METNO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|219946137|gb|ACL56529.1| ribosome recycling factor [Methylobacterium nodulans ORS 2060] Length = 187 Score = 194 bits (492), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 89/182 (48%), Positives = 132/182 (72%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 DL ++K RM ++ LK D+ +LRTGR SP++LD +++EAYG+ +P+ QVA ++V EPR Sbjct: 6 FDLADLKRRMQGAVNALKHDLGSLRTGRASPTLLDPIQIEAYGAVMPMAQVATISVPEPR 65 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 +L V+VWD+ MV++VE+ I ES+LGLNP+ EGQ +R+ +PE +E+RR +VKVAH YAE+ Sbjct: 66 LLSVAVWDRGMVSAVEKAIRESDLGLNPMTEGQTIRLRIPEMSEQRRKEMVKVAHKYAEE 125 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++++VR++RRDG+D LKK K G S+D + +QKITD I +D K+KEIM Sbjct: 126 ARVAVRHVRRDGLDLLKKLEKDGAISQDDEKRQADQVQKITDQHIAEVDQTLAAKEKEIM 185 Query: 185 HF 186 Sbjct: 186 QV 187 >gi|319405841|emb|CBI79473.1| Ribosome recycling factor [Bartonella sp. AR 15-3] Length = 186 Score = 194 bits (492), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 96/186 (51%), Positives = 129/186 (69%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ + + ++K RM IS K ++ +LRTGR S S+L+ + VEAYGS VP+NQVAN++V Sbjct: 1 MDITLIMDDLKRRMEGAISSFKHELGSLRTGRASASLLEHLTVEAYGSVVPINQVANISV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E RML VSVWDK M+ +VER I +S LGLNPI +G LRIP+PE EERR LVK+A+ Sbjct: 61 PESRMLSVSVWDKTMIGAVERAIRDSGLGLNPITDGMNLRIPLPELNEERRKELVKIAYQ 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 Y E+++I+ R++RRDGMD+LKK K G+ +D SL +QK+TD TI ID K+ Sbjct: 121 YTEQARIAARHVRRDGMDNLKKLEKEGEIGQDEARSLSEKVQKLTDETIAEIDKILLLKE 180 Query: 181 KEIMHF 186 EIM Sbjct: 181 TEIMQI 186 >gi|153009362|ref|YP_001370577.1| ribosome recycling factor [Ochrobactrum anthropi ATCC 49188] gi|166230810|sp|A6X0J4|RRF_OCHA4 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|151561250|gb|ABS14748.1| ribosome recycling factor [Ochrobactrum anthropi ATCC 49188] Length = 186 Score = 194 bits (492), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 97/186 (52%), Positives = 126/186 (67%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ D+ ++K RM I+ LK D+ LRTGR S S+L+ + +EAYGS +P+NQVAN+TV Sbjct: 1 MSDAFDINDLKRRMEGAINSLKHDLNGLRTGRASASLLEPIVIEAYGSTMPINQVANITV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E RML VSVWDK MV +VER I +S LGLNPI +G LRIP+PE E+RR LVK+AH Sbjct: 61 PESRMLSVSVWDKSMVGAVERAIRDSGLGLNPITDGTTLRIPLPELNEQRRKELVKIAHQ 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE+ +I+ R++RRDGMD LKK K S+D L +QK+TD TI +D K+ Sbjct: 121 YAEQGRIAARHVRRDGMDTLKKLEKDSLISQDDGRVLSEKVQKLTDETIAEMDKVVAVKE 180 Query: 181 KEIMHF 186 EIM Sbjct: 181 GEIMQV 186 >gi|307293418|ref|ZP_07573264.1| ribosome recycling factor [Sphingobium chlorophenolicum L-1] gi|306881484|gb|EFN12700.1| ribosome recycling factor [Sphingobium chlorophenolicum L-1] Length = 185 Score = 192 bits (489), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 93/179 (51%), Positives = 124/179 (69%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 D +++ RM + LK D+ LRTGR + +LD V VE YG+H+PLNQVA V+ EPRM Sbjct: 5 DKADLERRMHGAVESLKGDLAGLRTGRANIQLLDPVTVEVYGAHMPLNQVATVSAPEPRM 64 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 L V VWDK V ++ I + LGLNPIV+GQ LR+P+P+ TEERR L K+A YAE + Sbjct: 65 LSVQVWDKTNVGPCDKAIRSAGLGLNPIVDGQTLRLPIPDLTEERRKELAKLASKYAEGA 124 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +I+VRN+RRDGMD LK K G+ SED LE ++Q++TDSTI +ID+ K+KEI+ Sbjct: 125 RIAVRNVRRDGMDSLKVDEKKGEISEDERKRLETEVQRLTDSTIADIDAVTAAKEKEIL 183 >gi|86749942|ref|YP_486438.1| ribosome recycling factor [Rhodopseudomonas palustris HaA2] gi|123292529|sp|Q2IW83|RRF_RHOP2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|86572970|gb|ABD07527.1| ribosome recycling factor [Rhodopseudomonas palustris HaA2] Length = 187 Score = 192 bits (489), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 93/180 (51%), Positives = 129/180 (71%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D+ ++K RM L+ ++ LRTGR + SML+ V+V+AYG+H+PLNQ+A VTV EPR Sbjct: 6 FDINDLKRRMQGASQALQHELGGLRTGRAAASMLEPVQVDAYGTHMPLNQLATVTVPEPR 65 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 +L V VWDK MV +VE+ I +SNLGL+P EGQVLR+ +PE ++RR LVKVAH YAE Sbjct: 66 LLSVQVWDKSMVRAVEKAIVDSNLGLSPATEGQVLRLRIPELNQDRRKELVKVAHKYAEA 125 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++++VR++RRDG+D +KK KS + SED L+ ++QK TDS I ID K+KEI+ Sbjct: 126 ARVAVRHVRRDGLDTIKKLEKSHEISEDDQKRLDQEVQKATDSAISEIDQLLASKEKEIL 185 >gi|114569933|ref|YP_756613.1| ribosome recycling factor [Maricaulis maris MCS10] gi|122316100|sp|Q0APW2|RRF_MARMM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|114340395|gb|ABI65675.1| ribosome recycling factor [Maricaulis maris MCS10] Length = 186 Score = 192 bits (489), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 89/185 (48%), Positives = 127/185 (68%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ D ++K RM I L+K+ LRTGR S +L+ +KV+AYG+ P+NQ+ N++V Sbjct: 1 MSDEYDENDLKRRMDGAIESLRKEFAGLRTGRASAGLLEPIKVDAYGTPTPINQLGNISV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPRM+ + VWDK MVA+V++ I S +GLNP++EGQ+LRIP+P EERR + K+A Sbjct: 61 PEPRMITLQVWDKNMVAAVDKAIRNSGIGLNPVMEGQLLRIPIPPLNEERRAEIAKLAGN 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE ++++VRN+RRDGMD LKK K G SED + D+QK+T+ IK ID + K+ Sbjct: 121 YAEHARVAVRNVRRDGMDALKKMEKDGDLSEDEQKAFSEDVQKLTNEAIKRIDENLKSKQ 180 Query: 181 KEIMH 185 +EIM Sbjct: 181 EEIMQ 185 >gi|197105240|ref|YP_002130617.1| ribosome recycling factor protein [Phenylobacterium zucineum HLK1] gi|238690149|sp|B4RBZ1|RRF_PHEZH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|196478660|gb|ACG78188.1| ribosome recycling factor protein [Phenylobacterium zucineum HLK1] Length = 188 Score = 192 bits (489), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 91/180 (50%), Positives = 128/180 (71%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +DRM ++ LK++ +LRTGR S S+LD + V+AYGS +PL QVA V+V EPRM+ Sbjct: 9 LSKYRDRMDKAVAALKEEFGSLRTGRASASLLDQIHVDAYGSSMPLTQVAAVSVPEPRMI 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+VWD+ MV SVE+ I +S+LGLNP+V+GQ LRIP+P TEERR L K+A YAE+ + Sbjct: 69 TVNVWDRGMVVSVEKAIRQSDLGLNPVVDGQTLRIPIPPLTEERRKDLAKIAGRYAEQQR 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD + L+K++K S+D +E ++QK+TD IK ID + K++EIM Sbjct: 129 VAVRNIRRDANEDLRKAQKDNVISQDEEKRMETEVQKMTDEAIKRIDEALKTKEQEIMQV 188 >gi|254294076|ref|YP_003060099.1| ribosome recycling factor [Hirschia baltica ATCC 49814] gi|254042607|gb|ACT59402.1| ribosome recycling factor [Hirschia baltica ATCC 49814] Length = 184 Score = 192 bits (488), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 89/182 (48%), Positives = 132/182 (72%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 ID+++++ RM ++ LK + LRTGR S ++LD V V+AYG+ PL QVA+++V EPR Sbjct: 3 IDMKDLERRMEGAVASLKTEFSGLRTGRASVNLLDTVMVQAYGASTPLAQVASISVPEPR 62 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 ML V+VWDK +V + ++ I E+ LGLNP+++GQ LRIP+P EERR L K+A YAE Sbjct: 63 MLAVNVWDKTVVGAADKAIREAGLGLNPVMDGQNLRIPIPPLNEERRAELAKLAGKYAES 122 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++++RN+RRDGMD LKK K G+ S+D SLE+D+QK+TD I ++D+ + K++EIM Sbjct: 123 ARVAIRNVRRDGMDILKKMEKDGEISKDEQKSLEDDVQKLTDKIISSVDASVKSKEEEIM 182 Query: 185 HF 186 Sbjct: 183 QV 184 >gi|294084085|ref|YP_003550843.1| ribosome recycling factor [Candidatus Puniceispirillum marinum IMCC1322] gi|292663658|gb|ADE38759.1| ribosome recycling factor [Candidatus Puniceispirillum marinum IMCC1322] Length = 185 Score = 192 bits (488), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 88/181 (48%), Positives = 128/181 (70%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D++++K RM + LK + M LR GR S ML+ + V+AYGS +P++QV N++ EPR Sbjct: 4 FDIEDMKRRMEGGFASLKTEFMGLRAGRASTGMLEPIMVDAYGSKMPMSQVGNISAPEPR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 +L V+VWD M ASVE+ I ES+LGLNP+ EG ++R+P+P+ +EERR +VKVA YAE Sbjct: 64 LLTVTVWDASMTASVEKAIRESDLGLNPMAEGTLIRVPIPDLSEERRKDMVKVAGRYAEA 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++++RN+RRDG++ ++K+ K G SED LE+DIQK TD +K ID F K+KEI Sbjct: 124 ARVAIRNVRRDGIESVRKAEKEGLMSEDERHGLESDIQKTTDEYVKKIDDAFANKEKEIT 183 Query: 185 H 185 Sbjct: 184 Q 184 >gi|85373585|ref|YP_457647.1| ribosome recycling factor [Erythrobacter litoralis HTCC2594] gi|122544868|sp|Q2NBU1|RRF_ERYLH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|84786668|gb|ABC62850.1| ribosome recycling factor [Erythrobacter litoralis HTCC2594] Length = 185 Score = 192 bits (488), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 93/179 (51%), Positives = 126/179 (70%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 D +I+ RM + LK D+ LRTGR + S+LD V VE YG+ +PLNQVA V EPRM Sbjct: 5 DKADIERRMAGAVESLKSDLSGLRTGRANTSLLDPVVVEVYGAMMPLNQVATVNAPEPRM 64 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 L V VWDK V++VE+GI ++NLGLNP+ +GQ +R+P+P+ TEERR L K+A YAEK+ Sbjct: 65 LAVQVWDKANVSAVEKGITKANLGLNPMTDGQTVRLPMPDLTEERRKELAKLAGQYAEKA 124 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 KI++RN+RRDGM+ LK K+ SED +E+++QK+TD + DS E K+KEIM Sbjct: 125 KIAIRNVRRDGMEDLKADEKAKDISEDDRKRMEDEVQKLTDKYVAEADSAAEAKEKEIM 183 >gi|91977324|ref|YP_569983.1| ribosome recycling factor [Rhodopseudomonas palustris BisB5] gi|123721792|sp|Q136A7|RRF_RHOPS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|91683780|gb|ABE40082.1| ribosome recycling factor [Rhodopseudomonas palustris BisB5] Length = 187 Score = 192 bits (488), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 93/180 (51%), Positives = 130/180 (72%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D+ +K RM L+ ++ LRTGR S SML+ V+V+AYG+H+PLNQVA V+V EPR Sbjct: 6 FDINEVKRRMHGASQALQHELGGLRTGRASASMLEPVQVDAYGTHMPLNQVATVSVPEPR 65 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 +L V VWDK MV +VE+ I +SNLGL+P EGQVLR+ +PE ++RR LVKVAH YAE Sbjct: 66 LLSVQVWDKSMVKAVEKAIVDSNLGLSPATEGQVLRLRIPELNQDRRKELVKVAHKYAEA 125 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++++VR++RRDG+D +KK K+ + SED L++++QK TD+TI ID K+KEI+ Sbjct: 126 ARVAVRHVRRDGLDIIKKLEKAHEISEDDQKRLDHEVQKATDATISEIDQLLANKEKEIL 185 >gi|115524563|ref|YP_781474.1| ribosome recycling factor [Rhodopseudomonas palustris BisA53] gi|122296187|sp|Q07NJ0|RRF_RHOP5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|115518510|gb|ABJ06494.1| ribosome recycling factor [Rhodopseudomonas palustris BisA53] Length = 187 Score = 192 bits (487), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 92/180 (51%), Positives = 130/180 (72%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D+ +K RM L+ ++ LRTGR S SML+ V+V+AYG+H+PL QVA ++V EPR Sbjct: 6 FDISELKRRMQGATHALQHELGGLRTGRASSSMLEPVQVDAYGTHMPLIQVATISVPEPR 65 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 +L V VWDK M+ +VE+ I +SNLGL+P EGQV+R+ +PE EERR LVKVAH YAE Sbjct: 66 LLSVQVWDKSMIKAVEKAIVDSNLGLSPSTEGQVIRLRIPELNEERRKELVKVAHKYAEA 125 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++++VR++RRDG+D LKK K+ + SED L +D+QK+TD+TI+ +D K+KEI+ Sbjct: 126 ARVAVRHVRRDGLDTLKKLEKNHEISEDDQERLAHDVQKVTDATIQEVDQLLAAKEKEIL 185 >gi|256113719|ref|ZP_05454523.1| ribosome recycling factor [Brucella melitensis bv. 3 str. Ether] gi|265995074|ref|ZP_06107631.1| ribosome recycling factor rrf [Brucella melitensis bv. 3 str. Ether] gi|262766187|gb|EEZ11976.1| ribosome recycling factor rrf [Brucella melitensis bv. 3 str. Ether] Length = 186 Score = 191 bits (485), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 94/186 (50%), Positives = 125/186 (67%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ D+ ++K RM ++ LK D+ LRTGR S S+L+ + +EAYGS +P+NQVAN++V Sbjct: 1 MSDAFDINDLKRRMEGAVNALKHDLGGLRTGRASASLLEPITIEAYGSTMPINQVANISV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E RML VSVWDK MV +VER I +S LGLNPI +G LRI +PE E+RR LVK+AH Sbjct: 61 PESRMLSVSVWDKSMVGAVERAIRDSGLGLNPITDGMTLRICLPELNEQRRKELVKIAHQ 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE+ +I+ R++RRDGMD LKK K S+D L +QK+TD TI +D K+ Sbjct: 121 YAEQGRIAARHVRRDGMDQLKKLEKDSVISQDESRVLSEKVQKLTDDTIAEMDKIVAVKE 180 Query: 181 KEIMHF 186 EIM Sbjct: 181 GEIMQV 186 >gi|17987109|ref|NP_539743.1| ribosome recycling factor [Brucella melitensis bv. 1 str. 16M] gi|225852656|ref|YP_002732889.1| ribosome recycling factor [Brucella melitensis ATCC 23457] gi|256044814|ref|ZP_05447718.1| ribosome recycling factor [Brucella melitensis bv. 1 str. Rev.1] gi|256263850|ref|ZP_05466382.1| ribosome recycling factor rrf [Brucella melitensis bv. 2 str. 63/9] gi|260565586|ref|ZP_05836070.1| ribosome recycling factor [Brucella melitensis bv. 1 str. 16M] gi|265991238|ref|ZP_06103795.1| ribosome recycling factor rrf [Brucella melitensis bv. 1 str. Rev.1] gi|3122781|sp|P94340|RRF_BRUME RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=CP24; AltName: Full=Ribosome-releasing factor gi|254809496|sp|C0RJC7|RRF_BRUMB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|1674445|gb|AAB19043.1| CP24 [Brucella melitensis] gi|17982770|gb|AAL52007.1| ribosome recycling factor (rrf) [Brucella melitensis bv. 1 str. 16M] gi|225641021|gb|ACO00935.1| ribosome recycling factor [Brucella melitensis ATCC 23457] gi|260151654|gb|EEW86748.1| ribosome recycling factor [Brucella melitensis bv. 1 str. 16M] gi|263002022|gb|EEZ14597.1| ribosome recycling factor rrf [Brucella melitensis bv. 1 str. Rev.1] gi|263093981|gb|EEZ17915.1| ribosome recycling factor rrf [Brucella melitensis bv. 2 str. 63/9] gi|326409177|gb|ADZ66242.1| ribosome recycling factor [Brucella melitensis M28] gi|326538887|gb|ADZ87102.1| ribosome recycling factor [Brucella melitensis M5-90] Length = 186 Score = 191 bits (484), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 94/186 (50%), Positives = 125/186 (67%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ D+ ++K RM ++ LK D+ LRTGR S S+L+ + +EAYGS +P+NQVAN++V Sbjct: 1 MSDAFDINDLKRRMEGAVNALKHDLGGLRTGRASASLLEPITIEAYGSTMPINQVANISV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E RML VSVWDK MV +VER I +S LGLNPI +G LRI +PE E+RR LVK+AH Sbjct: 61 PESRMLSVSVWDKSMVGAVERAIRDSGLGLNPITDGMTLRIRLPELNEQRRKELVKIAHQ 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE+ +I+ R++RRDGMD LKK K S+D L +QK+TD TI +D K+ Sbjct: 121 YAEQGRIAARHVRRDGMDQLKKLEKDSVISQDESRVLSEKVQKLTDDTIAEMDKIVAVKE 180 Query: 181 KEIMHF 186 EIM Sbjct: 181 GEIMQV 186 >gi|323137307|ref|ZP_08072385.1| ribosome recycling factor [Methylocystis sp. ATCC 49242] gi|322397294|gb|EFX99817.1| ribosome recycling factor [Methylocystis sp. ATCC 49242] Length = 186 Score = 191 bits (484), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 96/185 (51%), Positives = 126/185 (68%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M + DL ++K RM I+ LK + LRTGR S S+L+ V V+AYG H PLNQVA ++V Sbjct: 1 MTEKFDLADLKRRMQGAIATLKHEFGGLRTGRASASLLEPVHVDAYGQHSPLNQVATISV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPRML V VWDK +V +V++ I E+NLGL P VEGQ+LRI +PE E+RR LVKVAH Sbjct: 61 PEPRMLSVQVWDKALVIAVDKAIREANLGLQPTVEGQMLRIRMPELNEQRRKELVKVAHK 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE ++++VR++RRDG+D LKK K ED E ++QK TD +K ID+ K+ Sbjct: 121 YAEDARVAVRHVRRDGLDILKKLLKDHAIPEDDEKRHETEVQKATDEAVKEIDAALAAKE 180 Query: 181 KEIMH 185 KEIM Sbjct: 181 KEIMQ 185 >gi|299134998|ref|ZP_07028189.1| ribosome recycling factor [Afipia sp. 1NLS2] gi|298589975|gb|EFI50179.1| ribosome recycling factor [Afipia sp. 1NLS2] Length = 187 Score = 191 bits (484), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 96/180 (53%), Positives = 126/180 (70%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D+ ++K RM LK ++ LRTGR + SM++ V+VEAYGSH+PLNQVA V+V EPR Sbjct: 6 FDINDLKRRMDGAKDSLKHELGGLRTGRAAISMVEPVQVEAYGSHMPLNQVATVSVPEPR 65 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 +L V VWDK MV +VE I SNLGLNP EGQV+R+ +PE EERR LVKVAH YAE Sbjct: 66 LLSVQVWDKSMVKAVETAIVNSNLGLNPATEGQVIRLRIPELNEERRKELVKVAHKYAEA 125 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +K++VR++RRDG+D +KK K + SED +IQK+TD+ I +ID K+KEI+ Sbjct: 126 AKVAVRHVRRDGLDIVKKLEKDRQMSEDDQERASGEIQKVTDAAIADIDKLLATKEKEIL 185 >gi|296446143|ref|ZP_06888091.1| ribosome recycling factor [Methylosinus trichosporium OB3b] gi|296256337|gb|EFH03416.1| ribosome recycling factor [Methylosinus trichosporium OB3b] Length = 186 Score = 190 bits (483), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 92/185 (49%), Positives = 129/185 (69%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+Q DL +K RM ++ LK ++ LRTGR S +L+ + VEAYG PLNQVA ++V Sbjct: 1 MSQTFDLPELKRRMQGAMATLKHELGGLRTGRASAGLLEPIHVEAYGQSTPLNQVATISV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPR+L V VWDK +V++V++ I +SNLGL P +EGQVLRI PE E+RR LVKVAH Sbjct: 61 PEPRLLSVQVWDKGLVSAVDKAIRDSNLGLMPTIEGQVLRIRTPELNEQRRKELVKVAHK 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE++++SVR++RRDG+D LKK +K ED E ++QK TD +++ID+ +K+ Sbjct: 121 YAEEARVSVRHVRRDGIDILKKLQKDHALPEDDAKRHETEVQKATDEAVRDIDAALAQKE 180 Query: 181 KEIMH 185 KEI+ Sbjct: 181 KEILQ 185 >gi|329889359|ref|ZP_08267702.1| ribosome recycling factor [Brevundimonas diminuta ATCC 11568] gi|328844660|gb|EGF94224.1| ribosome recycling factor [Brevundimonas diminuta ATCC 11568] Length = 185 Score = 190 bits (483), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 93/181 (51%), Positives = 124/181 (68%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 DL+ +DRM +++ LK D LRTGR + +L+ V VEAYG+ PL VA ++V EPRM Sbjct: 5 DLKTFRDRMDKSVAALKDDYAGLRTGRANAGLLEPVVVEAYGATSPLTAVAAISVPEPRM 64 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 + V+VWDK MV SVE+ I + LGLNP+V+GQ LRIP+P TEERR L K+A YAE Sbjct: 65 ISVNVWDKGMVVSVEKAIRSAGLGLNPVVDGQTLRIPIPPLTEERRKDLAKLAGKYAEDK 124 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 KI+VRN+RRD D LKK+ K+G+ S+D +E ++QK TD+ IK ID + K+ EIM Sbjct: 125 KIAVRNVRRDANDELKKAEKAGEISQDEQKKMEAEVQKDTDAAIKRIDETLKAKEVEIMQ 184 Query: 186 F 186 Sbjct: 185 V 185 >gi|126726888|ref|ZP_01742727.1| ribosome recycling factor [Rhodobacterales bacterium HTCC2150] gi|126703846|gb|EBA02940.1| ribosome recycling factor [Rhodobacterales bacterium HTCC2150] Length = 188 Score = 189 bits (479), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 86/176 (48%), Positives = 122/176 (69%), Gaps = 1/176 (0%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K RM ++ LK + TLRTGR + +MLD + VEAYG P+NQV V V EPRML ++V Sbjct: 14 KRRMDGAMTSLKSEFQTLRTGRAAATMLDPISVEAYGQRTPINQVGTVNVPEPRMLTINV 73 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 WDK MV +VE+ I ES LG+NP+V+G ++R+P+PE EERR L KVA YAE +K++VR Sbjct: 74 WDKTMVQAVEKAIRESGLGINPVVDGTIIRLPIPELNEERRRELTKVAAQYAESAKVAVR 133 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 N+RRDGMD +KK++ +G +D ++IQ++TD+ I +D+ K++EIM Sbjct: 134 NVRRDGMDQIKKAKGNGMGEDDQ-KIWADEIQEVTDAAIAAVDASLAAKQEEIMQV 188 >gi|103487441|ref|YP_617002.1| ribosome recycling factor [Sphingopyxis alaskensis RB2256] gi|122984925|sp|Q1GRQ3|RRF_SPHAL RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|98977518|gb|ABF53669.1| ribosome recycling factor [Sphingopyxis alaskensis RB2256] Length = 184 Score = 188 bits (478), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 90/179 (50%), Positives = 127/179 (70%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 D +++ RM + LK D+ LRTGR + ++LD V VE YGS +PLNQ+A+++V EPRM Sbjct: 5 DKADLERRMHGAVESLKHDLAGLRTGRANAALLDPVTVEVYGSQMPLNQIASISVPEPRM 64 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 L V VWDK V V++ I + LGLNPIV+GQ+LR+P+PE T+ERR L K+A YAEK+ Sbjct: 65 LSVQVWDKANVGPVDKAIRSAGLGLNPIVDGQMLRLPIPEMTQERRKELSKLAGQYAEKA 124 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++VRN+RRDGMD+LK+ + SED E ++QK+TD+TI ID+ K+KEI+ Sbjct: 125 RVAVRNVRRDGMDNLKQDENKKEISEDERKRHETEVQKLTDATIAEIDAAATAKEKEIL 183 >gi|296284729|ref|ZP_06862727.1| ribosome recycling factor [Citromicrobium bathyomarinum JL354] Length = 185 Score = 187 bits (476), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 94/179 (52%), Positives = 124/179 (69%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 D +I+ RM + LK D+ LRTGR + S+LD V VE YGS +PLNQVA V+ EPRM Sbjct: 5 DKSDIERRMQGAVESLKGDLAGLRTGRANTSLLDPVVVEVYGSMMPLNQVATVSAPEPRM 64 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 L V VWDK V++VE+GI +NLGLNP+ +GQ LRIP+P+ TEERR L KVA Y E + Sbjct: 65 LSVQVWDKGNVSAVEKGIAHANLGLNPMQDGQTLRIPMPDLTEERRKDLAKVADKYGESA 124 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 KI++RN+RRDGM+ LK+ K SED E+++QK+TD + + D+ E KKKEI+ Sbjct: 125 KIAIRNVRRDGMEALKEDEKKKDISEDDRKRSEDEVQKLTDKYVADTDTAVEHKKKEIL 183 >gi|167646764|ref|YP_001684427.1| ribosome recycling factor [Caulobacter sp. K31] gi|189044048|sp|B0SZ18|RRF_CAUSK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|167349194|gb|ABZ71929.1| ribosome recycling factor [Caulobacter sp. K31] Length = 188 Score = 187 bits (476), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 93/180 (51%), Positives = 123/180 (68%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L KDRM + LK+D LRTGR S +LD + V AYGS V LN VA+++V EPR + Sbjct: 9 LTRYKDRMDKAVLSLKEDFAGLRTGRASSGLLDQIMVNAYGSMVQLNTVASISVPEPRQI 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V++WDK +V++VE+ I S+LGLNP+VEG LRIP+P TEERR LVK+A YAE K Sbjct: 69 NVNIWDKGVVSAVEKAIRNSDLGLNPVVEGNNLRIPIPPLTEERRKDLVKIAGKYAEAQK 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD D LKK+ K+ SED + +E ++QKITD IK +D + K++EIM Sbjct: 129 VAVRNIRRDANDDLKKAEKASVISEDELKKMETEVQKITDGAIKQVDEALKTKEQEIMQV 188 >gi|297717876|gb|ADI50081.1| ribosome recycling factor [Candidatus Odyssella thessalonicensis L13] Length = 185 Score = 187 bits (476), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 91/174 (52%), Positives = 120/174 (68%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM I L ++ LRTGR S ++LD +KV+AYGS P+NQV N+ V E RML V VWD Sbjct: 12 RMDGAIEVLNREFSGLRTGRASVNLLDAIKVDAYGSPTPINQVGNINVPEARMLTVQVWD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 M+ +VE+ I ++ LGLNP V+GQ++RIP+P EERR L KVA YAE++KISVRN+ Sbjct: 72 NSMIKAVEKAIRDAGLGLNPAVDGQLIRIPLPPLNEERRQELTKVAAKYAEEAKISVRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD M+ LKKS K G+ SED L +++QK+TD+ IK ID K+K+IM Sbjct: 132 RRDIMESLKKSEKDGEISEDEHRRLSDEVQKVTDAHIKKIDEILASKQKDIMQV 185 >gi|209964517|ref|YP_002297432.1| ribosome recycling factor frr [Rhodospirillum centenum SW] gi|226749936|sp|B6ISU8|RRF_RHOCS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|209957983|gb|ACI98619.1| ribosome recycling factor frr [Rhodospirillum centenum SW] Length = 185 Score = 187 bits (475), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 90/180 (50%), Positives = 123/180 (68%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 D+++ + RM + L+K+ LRTGR S ++LD V V+AYGS PLNQVA V V EPR+ Sbjct: 5 DIKSFERRMDGAVETLRKEFGGLRTGRASTTLLDPVYVDAYGSSSPLNQVATVGVPEPRL 64 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 + V VWD+ +V +VE+ I E+ LGLNP +GQ LR+P+PE +ERR L KVA YAE++ Sbjct: 65 ITVQVWDRSLVKAVEKAIREAGLGLNPQSDGQTLRVPIPELNQERRQELAKVAAKYAEQA 124 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +++VRN+RRDGMD LKK K G SED + + +Q +TD+ IK ID K+KEIM Sbjct: 125 RVAVRNVRRDGMDMLKKLLKDGDISEDEQKTWADKVQALTDAHIKKIDEALATKEKEIMQ 184 >gi|217979929|ref|YP_002364076.1| ribosome recycling factor [Methylocella silvestris BL2] gi|254809521|sp|B8EMN5|RRF_METSB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|217505305|gb|ACK52714.1| ribosome recycling factor [Methylocella silvestris BL2] Length = 186 Score = 187 bits (474), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 92/186 (49%), Positives = 129/186 (69%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ DL +IK RM I+ LK ++ LRTGR S S+++ V VEAYG +PLNQVA ++V Sbjct: 1 MSAEFDLADIKRRMQGAIATLKHELGGLRTGRASASLIEPVNVEAYGQTMPLNQVATISV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPRML V VWDK MV +V++ I +NLGL+P VEGQVLRI +PE E+RR + KVAH Sbjct: 61 PEPRMLSVQVWDKGMVGAVDKAIRNANLGLSPTVEGQVLRIRIPELNEQRRKEMAKVAHK 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE +++++R++RRDG+D LK+ K + SED E+++QK TD + ++DS K+ Sbjct: 121 YAEDARVAIRHVRRDGIDVLKRLLKDKEISEDDEKRHESEVQKATDQCVADVDSALVAKE 180 Query: 181 KEIMHF 186 +EIM Sbjct: 181 REIMQV 186 >gi|209885087|ref|YP_002288944.1| ribosome recycling factor [Oligotropha carboxidovorans OM5] gi|254809524|sp|B6JH69|RRF_OLICO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|209873283|gb|ACI93079.1| ribosome recycling factor [Oligotropha carboxidovorans OM5] Length = 183 Score = 187 bits (474), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 95/180 (52%), Positives = 125/180 (69%), Gaps = 4/180 (2%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D+ ++K RM L+ ++ LRTGR + SML+ V+VEAYGSH+PLNQVA V+V EPR Sbjct: 6 FDINDLKRRMDGAKESLRYELGGLRTGRAAISMLEPVQVEAYGSHMPLNQVATVSVPEPR 65 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 +L V VWDK MV +VE I SNLGLNP EGQV+R+ +PE EERR LVKVAH YAE Sbjct: 66 LLSVQVWDKSMVKAVETAIVNSNLGLNPATEGQVIRLRIPELNEERRKELVKVAHKYAEA 125 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++++VR++RRDG+D +KK K SED +IQK+TD+ I +ID K+KEI+ Sbjct: 126 ARVAVRHVRRDGLDIVKKD----KMSEDEQERASGEIQKVTDAAIADIDKLLATKEKEIL 181 >gi|146278188|ref|YP_001168347.1| ribosome recycling factor [Rhodobacter sphaeroides ATCC 17025] gi|190360248|sp|A4WUH8|RRF_RHOS5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|145556429|gb|ABP71042.1| ribosome recycling factor [Rhodobacter sphaeroides ATCC 17025] Length = 188 Score = 187 bits (474), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 84/182 (46%), Positives = 127/182 (69%), Gaps = 1/182 (0%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 IDL I+ RM + L+ + +LRTGR S S+L+ + V+AYG PLNQ+ + V EPR Sbjct: 8 IDLDAIQRRMDGAMHALRTEFGSLRTGRASASILEPIHVDAYGQQTPLNQLGTINVPEPR 67 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+V++VWDK M++ VER I +S +G+NP+V+G ++R+P+PE EERR L KVA YAE+ Sbjct: 68 MVVINVWDKGMISKVERAIRDSGIGINPVVDGPIIRLPIPELNEERRKELTKVAAHYAEQ 127 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++++RN+RRDGMD +KK++ +G A +D +++Q +TD I +D EEK+KEIM Sbjct: 128 ARVAIRNVRRDGMDQIKKAKAAGMAEDDQ-KMWSDEVQALTDKAIAAVDKALEEKQKEIM 186 Query: 185 HF 186 Sbjct: 187 QV 188 >gi|114768798|ref|ZP_01446424.1| ribosome recycling factor [alpha proteobacterium HTCC2255] gi|114549715|gb|EAU52596.1| ribosome recycling factor [alpha proteobacterium HTCC2255] Length = 183 Score = 186 bits (473), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 90/186 (48%), Positives = 127/186 (68%), Gaps = 3/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ ID+ I+ RM + +K + LRTGR S S+LD + V AYG+ PLNQ A + V Sbjct: 1 MSDDIDIDAIEKRMNGAVLAMKSEFQALRTGRASASLLDKIMVNAYGAMTPLNQCAGINV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPRM+ V+VWDK ++ SV++ I ESNLG+NP+ +G +LR+P+PE EERR+ L KVA Sbjct: 61 PEPRMITVTVWDKTLIDSVDKAIRESNLGINPVGDGMMLRLPIPELNEERRIELTKVAGG 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE ++I+VRN+RRDGMD +K KS + SED ++IQ++T+ +IK ID E+K+ Sbjct: 121 YAESARIAVRNVRRDGMDQVK---KSDELSEDDQKIWSDEIQELTNVSIKKIDEVLEQKQ 177 Query: 181 KEIMHF 186 EIM Sbjct: 178 AEIMQV 183 >gi|56552049|ref|YP_162888.1| ribosome recycling factor [Zymomonas mobilis subsp. mobilis ZM4] gi|241762003|ref|ZP_04760087.1| ribosome recycling factor [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260752418|ref|YP_003225311.1| ribosome recycling factor [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|59802974|sp|Q9X5F0|RRF_ZYMMO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|56543623|gb|AAV89777.1| ribosome recycling factor [Zymomonas mobilis subsp. mobilis ZM4] gi|241373469|gb|EER63056.1| ribosome recycling factor [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258551781|gb|ACV74727.1| ribosome recycling factor [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 185 Score = 186 bits (472), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 88/176 (50%), Positives = 124/176 (70%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 +++ RM + LK D LRTGR S S+LD V V+ YG+++PLNQVA V+V EPRM+ V Sbjct: 8 DLERRMKGAVESLKSDFSGLRTGRASTSLLDPVTVDVYGANMPLNQVATVSVPEPRMITV 67 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 VWDK V V++ I + LGLNP+V+GQ+LR+P+P+ TEERR L K+ Y+EK++I+ Sbjct: 68 QVWDKSNVTPVDKAIRSAGLGLNPVVDGQMLRLPIPDLTEERRKELAKLVGQYSEKARIA 127 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 VRN+RRDG D +K+ K + SED EN++QK+TD TI +ID+ K+KEI+ Sbjct: 128 VRNVRRDGNDQIKQDEKKNEISEDEKKRFENEVQKLTDKTIADIDALAVHKEKEIL 183 >gi|126462131|ref|YP_001043245.1| ribosome recycling factor [Rhodobacter sphaeroides ATCC 17029] gi|221639121|ref|YP_002525383.1| ribosome recycling factor [Rhodobacter sphaeroides KD131] gi|332558135|ref|ZP_08412457.1| ribosome recycling factor [Rhodobacter sphaeroides WS8N] gi|190360247|sp|A3PJF7|RRF_RHOS1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|254809527|sp|B9KRU0|RRF_RHOSK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|126103795|gb|ABN76473.1| ribosome recycling factor [Rhodobacter sphaeroides ATCC 17029] gi|221159902|gb|ACM00882.1| Ribosome recycling factor [Rhodobacter sphaeroides KD131] gi|332275847|gb|EGJ21162.1| ribosome recycling factor [Rhodobacter sphaeroides WS8N] Length = 188 Score = 186 bits (472), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 84/182 (46%), Positives = 127/182 (69%), Gaps = 1/182 (0%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 IDL I+ RM + L+ + +LRTGR S S+L+ + V+AYG PLNQ+ + V EPR Sbjct: 8 IDLDAIQRRMDGAMHALRTEFGSLRTGRASASILEPIHVDAYGQQTPLNQLGTINVPEPR 67 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+V++VWDK M++ VER I +S +G+NP+V+G ++R+P+PE EERR L KVA YAE+ Sbjct: 68 MVVINVWDKGMISKVERAIRDSGIGINPVVDGPIIRLPIPELNEERRKELSKVAAHYAEQ 127 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++++RN+RRDGMD +KK++ +G A +D +++Q +TD I +D EEK+KEIM Sbjct: 128 ARVAIRNVRRDGMDQIKKAKSAGMAEDDQ-KMWSDEVQALTDKAIAAVDKALEEKQKEIM 186 Query: 185 HF 186 Sbjct: 187 QV 188 >gi|329850619|ref|ZP_08265464.1| ribosome recycling factor [Asticcacaulis biprosthecum C19] gi|328840934|gb|EGF90505.1| ribosome recycling factor [Asticcacaulis biprosthecum C19] Length = 185 Score = 186 bits (472), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 94/180 (52%), Positives = 118/180 (65%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 DL KDRM + LK+D LRTGR S S+LD V V+AYGS +PLN A V+V E RM Sbjct: 5 DLNRYKDRMDKAVVALKEDYSGLRTGRASASLLDQVVVDAYGSTMPLNACAAVSVPEARM 64 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 + VSVWD+ + SVE+ I + LGLNPI +GQ LRIP+P TEERR LVK+A YAE Sbjct: 65 ISVSVWDRGLTVSVEKAIRNAGLGLNPITDGQTLRIPIPPLTEERRKELVKIAGKYAETQ 124 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +++VRN+RR+ MD LKK+ K+ SED +IQ TDS IK ID + K+ EIM Sbjct: 125 RVAVRNVRREAMDDLKKAEKASDISEDEEKKGGTEIQGFTDSAIKRIDEVLKAKEAEIMQ 184 >gi|300023426|ref|YP_003756037.1| ribosome recycling factor [Hyphomicrobium denitrificans ATCC 51888] gi|299525247|gb|ADJ23716.1| ribosome recycling factor [Hyphomicrobium denitrificans ATCC 51888] Length = 187 Score = 186 bits (471), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 90/178 (50%), Positives = 126/178 (70%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 D+ ++ RM ++ LK++ LRTGR S ++LD V+V YGS +PLNQVA V+V EPRM Sbjct: 7 DINEVEKRMRASLDALKREFSGLRTGRASANLLDPVQVMVYGSRMPLNQVATVSVPEPRM 66 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 + V VWD+ V +V++GI E+NLGLNPI++GQ+LR+P+P T +RR LVK+AH YAE+S Sbjct: 67 ISVQVWDRSNVTAVDKGIREANLGLNPIMDGQILRLPIPSLTADRRQELVKLAHKYAEQS 126 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 K++VRN+RR+ MD LKK K GK S+D +Q++TD IK +DS K+ EI Sbjct: 127 KVAVRNVRREAMDLLKKLEKDGKMSQDDHRGHSEKVQELTDRIIKEVDSTLVTKEAEI 184 >gi|330993376|ref|ZP_08317311.1| Ribosome-recycling factor [Gluconacetobacter sp. SXCC-1] gi|329759406|gb|EGG75915.1| Ribosome-recycling factor [Gluconacetobacter sp. SXCC-1] Length = 188 Score = 186 bits (471), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 84/179 (46%), Positives = 119/179 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++ RM I L++D LR+GR SP++L+ V+VEAYG VPL QV ++ V E RML Sbjct: 9 LADLTRRMDGAIESLRRDFAGLRSGRASPALLEPVRVEAYGGEVPLTQVGSIAVPEARML 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V VWD+ +V +VER I ++ LGLNP +GQ +R+P+P+ TEERR L + A YAE + Sbjct: 69 TVQVWDRTLVGAVERAIRDAGLGLNPAADGQTVRVPIPQLTEERRNELARAAGKYAENGR 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 I+VR +RRDGMD +K K+G SED V + + IQK+TD ++ +D EK++EI Sbjct: 129 IAVRGVRRDGMDQTRKLEKAGDISEDDVKTWSDAIQKLTDQYVRRVDELLVEKEREIKQ 187 >gi|148553387|ref|YP_001260969.1| ribosome recycling factor [Sphingomonas wittichii RW1] gi|166231512|sp|A5V3G5|RRF_SPHWW RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|148498577|gb|ABQ66831.1| ribosome recycling factor [Sphingomonas wittichii RW1] Length = 185 Score = 185 bits (470), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 88/168 (52%), Positives = 117/168 (69%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 D +++ RM + LK D+ LRTGR S ++LD V VE YG+H+PLNQ A VT EPRM Sbjct: 5 DKADLERRMHGAVEALKSDLTGLRTGRASVNLLDPVTVEIYGAHMPLNQAATVTAPEPRM 64 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 L V VWD+ V V++ I + LGLNPIV+GQ LRIP+P+ TEERR L K+A YAEK+ Sbjct: 65 LSVQVWDRSNVGPVDKAIRSAGLGLNPIVDGQTLRIPIPDLTEERRKELAKLASQYAEKA 124 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNID 173 +++VRN+RRDGMD LK K G+ ED E ++QK+TD+TI ++D Sbjct: 125 RVAVRNVRRDGMDSLKTDEKKGEIGEDDRKRRETEVQKLTDATISDVD 172 >gi|114797846|ref|YP_760475.1| ribosome recycling factor [Hyphomonas neptunium ATCC 15444] gi|123028025|sp|Q0C1B8|RRF_HYPNA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|114738020|gb|ABI76145.1| ribosome recycling factor [Hyphomonas neptunium ATCC 15444] Length = 184 Score = 185 bits (470), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 87/178 (48%), Positives = 126/178 (70%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+I+ RM ++ L + LRTGR S ++LD ++V AYG PL+QVA+VTV + RML Sbjct: 6 QDIERRMEGALASLASEFAGLRTGRASVNLLDSIQVPAYGGVTPLSQVASVTVSDTRMLS 65 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+VWDK +V + +R I +S LGLNP+++GQ LRIP+P EERR+ L K+A YAE +++ Sbjct: 66 VNVWDKTVVGAADRAIRDSGLGLNPVMDGQTLRIPIPPLNEERRVELTKIAGKYAEAARV 125 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +VRN+RRDGMD LKK+ K G+ SED +L ++QK+TD+ +K +D + K+ EIM Sbjct: 126 AVRNVRRDGMDDLKKAEKDGEISEDRHRALTEEVQKLTDAFVKRVDEALKAKEAEIMQ 183 >gi|296115044|ref|ZP_06833686.1| ribosome recycling factor [Gluconacetobacter hansenii ATCC 23769] gi|295978381|gb|EFG85117.1| ribosome recycling factor [Gluconacetobacter hansenii ATCC 23769] Length = 188 Score = 185 bits (469), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 84/179 (46%), Positives = 118/179 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++ RM I L++D LR+GR SP++L+ V+VEAYG VPL QV ++ V E RML Sbjct: 9 LADVTRRMDGAIESLRRDFAGLRSGRASPALLEPVRVEAYGGEVPLTQVGSIAVPEARML 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V VWD+ +V +VER I +S LGLNP +GQ +R+P+P+ TEERR L + A YAE +K Sbjct: 69 TVQVWDRSLVGAVERAIRDSGLGLNPAADGQTVRVPIPQLTEERRNELARAAGKYAENAK 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 I+VR +RRDGM+ + K G+ S+D V + IQK+TD +K +D EK++EI Sbjct: 129 IAVRGVRRDGMEQTRGQEKKGEISQDDVKVWSDAIQKLTDQYVKRVDELLAEKEREIKQ 187 >gi|258541747|ref|YP_003187180.1| ribosome recycling factor [Acetobacter pasteurianus IFO 3283-01] gi|329114467|ref|ZP_08243229.1| Ribosome-recycling factor [Acetobacter pomorum DM001] gi|256632825|dbj|BAH98800.1| ribosome Recycling Factor (RRF) [Acetobacter pasteurianus IFO 3283-01] gi|256635882|dbj|BAI01851.1| ribosome Recycling Factor (RRF) [Acetobacter pasteurianus IFO 3283-03] gi|256638937|dbj|BAI04899.1| ribosome Recycling Factor (RRF) [Acetobacter pasteurianus IFO 3283-07] gi|256641991|dbj|BAI07946.1| ribosome Recycling Factor (RRF) [Acetobacter pasteurianus IFO 3283-22] gi|256645046|dbj|BAI10994.1| ribosome Recycling Factor (RRF) [Acetobacter pasteurianus IFO 3283-26] gi|256648101|dbj|BAI14042.1| ribosome Recycling Factor (RRF) [Acetobacter pasteurianus IFO 3283-32] gi|256651154|dbj|BAI17088.1| ribosome Recycling Factor (RRF) [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654145|dbj|BAI20072.1| ribosome Recycling Factor (RRF) [Acetobacter pasteurianus IFO 3283-12] gi|326696543|gb|EGE48222.1| Ribosome-recycling factor [Acetobacter pomorum DM001] Length = 187 Score = 185 bits (469), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 86/179 (48%), Positives = 117/179 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++K RM + L++D LR+GR SP++L+ V+VEAYG VPL QV ++ V E RM+ Sbjct: 8 LDDLKRRMDGALDSLRRDFSGLRSGRASPALLEPVRVEAYGGEVPLTQVGSIAVPEARMI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V VWD+ + +VER I +S LGLNP EGQ +R+P+P+ TEERR L K A YAE K Sbjct: 68 TVQVWDRALAGAVERAIRDSGLGLNPAGEGQTIRVPIPQLTEERRNELAKAAARYAEGGK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VR +RRDGMD K K G+ S+D V + + IQK+TD +K ID +K KEI Sbjct: 128 VAVRGVRRDGMDKAKGFEKKGEISQDDVKTWSDAIQKLTDQYVKKIDDMLADKDKEIKQ 186 >gi|332186160|ref|ZP_08387906.1| ribosome recycling factor [Sphingomonas sp. S17] gi|332013975|gb|EGI56034.1| ribosome recycling factor [Sphingomonas sp. S17] Length = 185 Score = 185 bits (469), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 90/168 (53%), Positives = 117/168 (69%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 D +++ RM + LK D+ LRTGR S ++LD V VE YGSH+PLNQVA V+ EPRM Sbjct: 5 DKSDLERRMQGAVESLKHDLNGLRTGRASTALLDPVTVEVYGSHMPLNQVATVSAPEPRM 64 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 L V VWDK V+SVE+ I + LGLNPI +GQ LR+P+P+ TEERR L K+A+ YAE + Sbjct: 65 LSVQVWDKSNVSSVEKAIRSAGLGLNPINDGQTLRLPIPDLTEERRKELAKLANKYAESA 124 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNID 173 +I+VRN+RRDGMD LK K G ED E ++QK+TD+TI +D Sbjct: 125 RIAVRNVRRDGMDSLKTDEKKGVFGEDERKRHETEVQKLTDATIAELD 172 >gi|4768863|gb|AAD29657.1|AF124757_17 ribosome recycling factor [Zymomonas mobilis subsp. mobilis ZM4] Length = 185 Score = 184 bits (468), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 87/176 (49%), Positives = 124/176 (70%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 +++ R+ + LK D LRTGR S S+LD V V+ YG+++PLNQVA V+V EPRM+ V Sbjct: 8 DLERRIKGAVESLKSDFSGLRTGRASTSLLDPVTVDVYGANMPLNQVATVSVPEPRMITV 67 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 VWDK V V++ I + LGLNP+V+GQ+LR+P+P+ TEERR L K+ Y+EK++I+ Sbjct: 68 QVWDKSNVTPVDKAIRSAGLGLNPVVDGQMLRLPIPDLTEERRKELAKLVGQYSEKARIA 127 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 VRN+RRDG D +K+ K + SED EN++QK+TD TI +ID+ K+KEI+ Sbjct: 128 VRNVRRDGNDQIKQDEKKNEISEDEKKRFENEVQKLTDKTIADIDALAVHKEKEIL 183 >gi|77463257|ref|YP_352761.1| ribosome recycling factor [Rhodobacter sphaeroides 2.4.1] gi|123592078|sp|Q3J2X4|RRF_RHOS4 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|77387675|gb|ABA78860.1| ribosome recycling factor [Rhodobacter sphaeroides 2.4.1] Length = 188 Score = 184 bits (468), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 84/182 (46%), Positives = 126/182 (69%), Gaps = 1/182 (0%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 IDL I+ RM + L+ + +LRTGR S S+L+ + V+AYG PLNQ+ + V EPR Sbjct: 8 IDLDAIQRRMDGAMHALRTEFGSLRTGRASASILEPIHVDAYGQQTPLNQLGTINVPEPR 67 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+V++VWDK M++ VER I +S +G+NP+V+G ++R+P+PE EERR L KVA YAE+ Sbjct: 68 MVVINVWDKGMISKVERAIRDSGIGINPVVDGPIIRLPIPELNEERRKELSKVAAHYAEQ 127 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++++RN+RRDGMD +KK++ G A +D +++Q +TD I +D EEK+KEIM Sbjct: 128 ARVAIRNVRRDGMDQIKKAKSVGMAEDDQ-KMWSDEVQALTDKAIAAVDKALEEKQKEIM 186 Query: 185 HF 186 Sbjct: 187 QV 188 >gi|83311594|ref|YP_421858.1| ribosome recycling factor [Magnetospirillum magneticum AMB-1] gi|123541757|sp|Q2W4C6|RRF_MAGMM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|82946435|dbj|BAE51299.1| Ribosome recycling factor [Magnetospirillum magneticum AMB-1] Length = 190 Score = 184 bits (467), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 93/179 (51%), Positives = 118/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++I RM + LKK+ LR+GR S ++LD V VEAYG +PL+Q V V EPRML Sbjct: 12 KDITRRMDSAVEVLKKEFSGLRSGRASINLLDPVVVEAYGQTMPLSQCGTVGVPEPRMLT 71 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V VWDK V +VE+ I + LGLNP +GQ++R+P+P EERR L KVA Y+E+++I Sbjct: 72 VQVWDKSQVKAVEKAIANAGLGLNPQADGQMIRVPIPPLNEERRKELQKVAGKYSEQARI 131 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRN+RRDGMD LKK K G SED + E +IQ ITD TIK ID K+KEIM Sbjct: 132 SVRNVRRDGMDTLKKMEKDGHISEDEIKKHEKEIQAITDETIKKIDEALGHKEKEIMQV 190 >gi|162147934|ref|YP_001602395.1| ribosome recycling factor [Gluconacetobacter diazotrophicus PAl 5] gi|209542552|ref|YP_002274781.1| ribosome recycling factor [Gluconacetobacter diazotrophicus PAl 5] gi|189044057|sp|A9HKW6|RRF_GLUDA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|161786511|emb|CAP56093.1| Ribosome recycling factor [Gluconacetobacter diazotrophicus PAl 5] gi|209530229|gb|ACI50166.1| ribosome recycling factor [Gluconacetobacter diazotrophicus PAl 5] Length = 188 Score = 184 bits (467), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 84/179 (46%), Positives = 117/179 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++ RM + L++D LR+GR SP++++ V+VEAYG VPL QV ++ V E RML Sbjct: 9 LDDLTRRMDGALESLRRDFAGLRSGRASPALIEPVRVEAYGGEVPLTQVGSIAVPEARML 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V VWD+ +V +VER I +S LGLNP +GQ +R+P+P+ TEERR L + A Y+E +K Sbjct: 69 TVQVWDRSLVGAVERAIRDSGLGLNPAADGQTVRVPIPQLTEERRGELARTAGKYSENAK 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 I+VR +RRDGMD K K G S+D V + IQK+TD +K ID EK++EI Sbjct: 129 IAVRGVRRDGMDQTKAQEKKGDISQDDVKVWSDAIQKLTDQYVKRIDEMLAEKEREIKQ 187 >gi|149186826|ref|ZP_01865136.1| ribosome recycling factor [Erythrobacter sp. SD-21] gi|148829493|gb|EDL47934.1| ribosome recycling factor [Erythrobacter sp. SD-21] Length = 185 Score = 184 bits (466), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 92/179 (51%), Positives = 125/179 (69%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 D +I+ RM I LK D+ LRTGR + S+LD V VE YGS +PLNQVA V+ EPRM Sbjct: 5 DKSDIERRMKGAIESLKGDLSGLRTGRANTSLLDPVVVEVYGSMMPLNQVATVSAPEPRM 64 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 L V VWDK V +VE+GI ++NLGLNP+++GQ +R+P+P+ TEERR L K+A YAE+S Sbjct: 65 LSVQVWDKANVTAVEKGIAKANLGLNPMIDGQNVRLPMPDLTEERRRDLAKLAGQYAEQS 124 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 KI++RN+RRDGM+ LK+ K + SED E+++QK+TD + + K+KEIM Sbjct: 125 KIAIRNVRRDGMEALKEDEKKKEISEDDRKRSEDEVQKLTDKYVAEAEQAASAKEKEIM 183 >gi|58040244|ref|YP_192208.1| ribosome recycling factor [Gluconobacter oxydans 621H] gi|62900775|sp|Q5FPZ4|RRF_GLUOX RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|58002658|gb|AAW61552.1| Ribosome Recycling Factor (RRF) [Gluconobacter oxydans 621H] Length = 188 Score = 183 bits (465), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 87/177 (49%), Positives = 121/177 (68%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++ RM I L++D+ LR+GR SP++L+ V+VEAYGS VPL+QV ++ V E RML Sbjct: 9 LADLTRRMDGAIESLRRDLSGLRSGRASPNLLEPVRVEAYGSEVPLSQVGSIAVPEARML 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VSVWD+ +V +VER I +S LGLNP +GQ +R+P+P TEERR L + A YAE K Sbjct: 69 TVSVWDRTVVGAVERAIRDSGLGLNPSTDGQTVRVPIPALTEERRNELARAASRYAENGK 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 ISVR +RRDGM+ K K + S+D + + + IQK+TD IK +D F +K++EI Sbjct: 129 ISVRGVRRDGMEQTKALEKKSEISQDDMKTWTDAIQKLTDQYIKKVDDIFADKEREI 185 >gi|144897597|emb|CAM74461.1| Ribosome recycling factor [Magnetospirillum gryphiswaldense MSR-1] Length = 190 Score = 183 bits (464), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 87/179 (48%), Positives = 119/179 (66%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +++ RM +T+ LKK+ LR+GR S+L+ V VEAYG +P+ Q + V EPRML Sbjct: 12 KDVAHRMDNTVEVLKKEFSGLRSGRAVASLLEPVVVEAYGQTMPITQCGTIAVPEPRMLT 71 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V VWDK V +VE+ I E+ LGLNP +GQ++R+P+P EERR L KVA YAE+++I Sbjct: 72 VQVWDKGQVKAVEKAIREAGLGLNPQTDGQLVRVPIPSLNEERRKELQKVAGKYAEQARI 131 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRDGMD LKK K G SED + E ++Q +TD TIK +D K+KEIM Sbjct: 132 AIRNVRRDGMDTLKKMEKDGHISEDEIKKHEKEVQSLTDDTIKKVDETLAHKEKEIMQV 190 >gi|260433807|ref|ZP_05787778.1| ribosome recycling factor [Silicibacter lacuscaerulensis ITI-1157] gi|260417635|gb|EEX10894.1| ribosome recycling factor [Silicibacter lacuscaerulensis ITI-1157] Length = 187 Score = 182 bits (463), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 86/181 (47%), Positives = 126/181 (69%), Gaps = 1/181 (0%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 +D+ ++K RM ++ L+ + +LRTGR S SMLD + V+AYGS P+NQV V V EPR Sbjct: 7 LDIDDLKRRMEGAMANLRTEFASLRTGRASASMLDPIMVDAYGSMTPINQVGTVNVPEPR 66 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ ++VWDK +V VE+ I ES LG+NP + G ++ +P+PE EERR L KVA YAE Sbjct: 67 MVTINVWDKSLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRRELGKVAGHYAEH 126 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++++RN+RRDGMD +KK++ +G SED EN++Q++TD IK +D+ E K+ EIM Sbjct: 127 ARVAIRNVRRDGMDQIKKAKANG-LSEDDQKFWENEVQELTDQMIKAVDTALEAKQAEIM 185 Query: 185 H 185 Sbjct: 186 Q 186 >gi|294012399|ref|YP_003545859.1| ribosome recycling factor RF-4 [Sphingobium japonicum UT26S] gi|292675729|dbj|BAI97247.1| ribosome recycling factor RF-4 [Sphingobium japonicum UT26S] Length = 185 Score = 182 bits (463), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 94/179 (52%), Positives = 124/179 (69%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 D +++ RM + LK D+ LRTGR + +LD V VE YG+H+PLNQVA V+ EPRM Sbjct: 5 DKADLERRMAGAVESLKGDLSGLRTGRANIQLLDPVTVEVYGAHMPLNQVATVSAPEPRM 64 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 L V VWDK V V++ I + LGLNPIV+GQ LR+P+P+ TEERR L K+A YAE + Sbjct: 65 LSVQVWDKSNVGPVDKAIRSAGLGLNPIVDGQTLRLPIPDLTEERRKELAKLASKYAEGA 124 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +I+VRN+RRDGMD LK K G+ SED E ++QK+TDSTI +ID+ K+KEI+ Sbjct: 125 RIAVRNVRRDGMDSLKTDEKKGEISEDERKRKETEVQKLTDSTIADIDAATAAKEKEIL 183 >gi|259415740|ref|ZP_05739660.1| ribosome recycling factor [Silicibacter sp. TrichCH4B] gi|259347179|gb|EEW58956.1| ribosome recycling factor [Silicibacter sp. TrichCH4B] Length = 187 Score = 182 bits (461), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 88/181 (48%), Positives = 122/181 (67%), Gaps = 1/181 (0%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 +D ++K RM ++ LK + +LRTGR S SML+ V V+AYGS P+NQV V V EPR Sbjct: 7 LDTDDLKRRMDGAMANLKTEFASLRTGRASASMLEPVMVDAYGSQTPINQVGTVNVPEPR 66 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ ++VWDK +V VE+ I ES LG+NP + G ++ +P+PE EERR L KVA YAE Sbjct: 67 MVTINVWDKGLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRRELTKVAGQYAEH 126 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++SVRN+RRDGMD +KK++ G SED E ++Q +TD IK +D+ E K+ EIM Sbjct: 127 ARVSVRNVRRDGMDQIKKAKSEG-MSEDDQKFWEAEVQDLTDKMIKAVDAALETKQAEIM 185 Query: 185 H 185 Sbjct: 186 Q 186 >gi|46202355|ref|ZP_00053346.2| COG0233: Ribosome recycling factor [Magnetospirillum magnetotacticum MS-1] Length = 173 Score = 182 bits (461), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 90/173 (52%), Positives = 114/173 (65%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M + LKK+ LR+GR S ++LD V VEAYG +PL+Q V V EPRML V VWDK Sbjct: 1 MDSAVEVLKKEFSGLRSGRASVNLLDPVVVEAYGQTMPLSQCGTVGVPEPRMLTVQVWDK 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 V +VE+ I + LGLNP +GQ++R+P+P EERR L KVA YAE+++ISVRN+R Sbjct: 61 SQVKAVEKAIANAGLGLNPQADGQMIRVPIPALNEERRKELQKVAGKYAEQARISVRNVR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RDGMD LKK K G SED + E ++Q +TD TIK ID K+KEIM Sbjct: 121 RDGMDSLKKMEKDGHISEDEIKKHEKEVQTVTDDTIKKIDEVLGHKEKEIMQV 173 >gi|254510739|ref|ZP_05122806.1| ribosome recycling factor [Rhodobacteraceae bacterium KLH11] gi|221534450|gb|EEE37438.1| ribosome recycling factor [Rhodobacteraceae bacterium KLH11] Length = 187 Score = 182 bits (461), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 87/181 (48%), Positives = 125/181 (69%), Gaps = 1/181 (0%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 +D ++K RM ++ L+ + +LRTGR S SML+ V V+AYGS P+NQV V V EPR Sbjct: 7 LDTDDLKRRMDGAMANLRTEFASLRTGRASASMLEPVMVDAYGSMTPINQVGTVNVPEPR 66 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ V+VWDK +V VE+ I ES LG+NP + G ++ +P+PE EERR L KVA YAE Sbjct: 67 MVTVNVWDKGLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRRELGKVAGQYAES 126 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++S+RN+RRDGMD +KK++ G SED E+++Q++TD+ IK++D E K+ EIM Sbjct: 127 ARVSIRNVRRDGMDQIKKAKADG-MSEDDQKFWESEVQELTDAMIKSVDEALETKQAEIM 185 Query: 185 H 185 Sbjct: 186 Q 186 >gi|260575886|ref|ZP_05843881.1| ribosome recycling factor [Rhodobacter sp. SW2] gi|259021812|gb|EEW25113.1| ribosome recycling factor [Rhodobacter sp. SW2] Length = 188 Score = 181 bits (460), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 85/182 (46%), Positives = 125/182 (68%), Gaps = 1/182 (0%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 IDL I+ RM + L+ + +LRTGR S S+L+ + V+AYG P+NQ+ V V EPR Sbjct: 8 IDLDAIQRRMDGALHALRTEFGSLRTGRASASILEPIHVDAYGQMTPINQLGTVNVPEPR 67 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+V++VWDK MV VER I +S +G+NP+V+G ++R+P+PE EERR L KVA YAE Sbjct: 68 MVVINVWDKAMVQKVERAIRDSGIGINPVVDGPLIRLPIPELNEERRAQLSKVAAHYAET 127 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++++RN+RRDGMD +KK++ +G A +D E ++Q +TD I N+D E K++EIM Sbjct: 128 ARVAIRNVRRDGMDQIKKAKAAGMAEDDQKMWSE-EVQDLTDKAIANVDRTLELKQQEIM 186 Query: 185 HF 186 Sbjct: 187 QV 188 >gi|99081254|ref|YP_613408.1| ribosome recycling factor [Ruegeria sp. TM1040] gi|122984285|sp|Q1GGS0|RRF_SILST RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|99037534|gb|ABF64146.1| ribosome recycling factor [Ruegeria sp. TM1040] Length = 187 Score = 181 bits (460), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 87/181 (48%), Positives = 123/181 (67%), Gaps = 1/181 (0%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 +D ++K RM ++ LK + +LRTGR S SML+ V V+AYGS P+NQV V V EPR Sbjct: 7 LDTDDLKRRMDGAMANLKTEFASLRTGRASASMLEPVMVDAYGSMTPINQVGTVNVPEPR 66 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ ++VWDK +V VE+ I ES LG+NP + G ++ +P+PE EERR L KVA YAE Sbjct: 67 MVTINVWDKGLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRRELTKVAGQYAEH 126 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++S+RN+RRDGMD +KK++ G SED E ++Q++TD IK +D+ E K+ EIM Sbjct: 127 ARVSIRNVRRDGMDQIKKAKADG-MSEDDQKFWETEVQELTDKMIKAVDAALETKQAEIM 185 Query: 185 H 185 Sbjct: 186 Q 186 >gi|218514368|ref|ZP_03511208.1| ribosome recycling factor [Rhizobium etli 8C-3] Length = 131 Score = 181 bits (460), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 86/131 (65%), Positives = 107/131 (81%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M++ ID++ +K RM +S K D+ +LRTGR S ++LD V +EAYGS VPLNQVAN+TV Sbjct: 1 MSEGIDIKELKRRMDGAVSAFKSDIASLRTGRASANILDPVTIEAYGSRVPLNQVANITV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPRML VSVWDK MV++VERGI ESNLGLNPIV+GQ LRIP+PE EERR +LVKVAH Sbjct: 61 PEPRMLTVSVWDKSMVSAVERGIRESNLGLNPIVDGQSLRIPLPELNEERRKSLVKVAHD 120 Query: 121 YAEKSKISVRN 131 YAEKSK+++R+ Sbjct: 121 YAEKSKVAIRH 131 >gi|304391648|ref|ZP_07373590.1| ribosome recycling factor [Ahrensia sp. R2A130] gi|303295877|gb|EFL90235.1| ribosome recycling factor [Ahrensia sp. R2A130] Length = 186 Score = 181 bits (459), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 85/186 (45%), Positives = 123/186 (66%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M IDL++++ RM +++ KD+ LRTGR S S+LD V V+AYG +P+NQVANV Sbjct: 1 MADGIDLKDVEKRMETSLASFTKDLGGLRTGRASASLLDPVMVDAYGQKMPINQVANVGA 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EP+++ V +WDK MV VE+ + E+ LGLNP+V+GQ LRIP+P+ EERR LVKVA Sbjct: 61 PEPKLITVQIWDKSMVGPVEKAVREAGLGLNPVVDGQNLRIPMPDLNEERRRDLVKVAKT 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE +K+++R++RRD M+ LKK+ K + +D +QK+TD + +D K+ Sbjct: 121 YAEDAKVTIRHVRRDAMETLKKAEKDKEIGQDEARGSSEKVQKMTDDKVNEVDKVLATKE 180 Query: 181 KEIMHF 186 EIM Sbjct: 181 GEIMQV 186 >gi|182677297|ref|YP_001831443.1| ribosome recycling factor [Beijerinckia indica subsp. indica ATCC 9039] gi|238691217|sp|B2ID97|RRF_BEII9 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|182633180|gb|ACB93954.1| ribosome recycling factor [Beijerinckia indica subsp. indica ATCC 9039] Length = 186 Score = 181 bits (459), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 90/185 (48%), Positives = 124/185 (67%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ D+ ++K RM I+ LK ++ LRTGR + S+L+ V V+AYG +PLNQVA ++V Sbjct: 1 MSAEFDISDLKRRMQGAIATLKHELGGLRTGRATASLLEPVHVDAYGQSLPLNQVATISV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E RML V VWDK MV V++ I +SNLGL+P VEGQ+LRI +PE E+RR + KVAH Sbjct: 61 AEARMLSVQVWDKGMVGPVDKAIRDSNLGLSPTVEGQILRIRIPELNEQRRKEMAKVAHK 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE++K++VR++RRDG+D LKK K ED +IQK+TD + +D K+ Sbjct: 121 YAEEAKVAVRHVRRDGIDTLKKLLKDKAIGEDDEKRHAAEIQKVTDQFVGEVDQALAAKE 180 Query: 181 KEIMH 185 KEIM Sbjct: 181 KEIMQ 185 >gi|110679817|ref|YP_682824.1| ribosome recycling factor [Roseobacter denitrificans OCh 114] gi|123065540|sp|Q166F5|RRF_ROSDO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|109455933|gb|ABG32138.1| ribosome recycling factor [Roseobacter denitrificans OCh 114] Length = 187 Score = 181 bits (458), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 90/182 (49%), Positives = 121/182 (66%), Gaps = 1/182 (0%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 ++D +I+ RM IS LK + +LRTGR S SML+ V V+AYG P+NQV V V EP Sbjct: 6 MLDTDDIERRMDGAISSLKTEFASLRTGRASASMLEPVMVDAYGQRTPINQVGTVNVPEP 65 Query: 64 RMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAE 123 RM+ ++VWDK +V VE+ I ES LG+NP + G ++ +P+PE EERR L KVA YAE Sbjct: 66 RMVTINVWDKGLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRRELSKVAGQYAE 125 Query: 124 KSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +++S+RNIRRDGMD +KK++ G SED E ++Q+ITD IK ID K+ EI Sbjct: 126 HARVSIRNIRRDGMDQIKKAKADG-LSEDDQKLWEGEVQEITDRYIKGIDDQLATKQAEI 184 Query: 184 MH 185 M Sbjct: 185 MQ 186 >gi|56696546|ref|YP_166903.1| ribosome recycling factor [Ruegeria pomeroyi DSS-3] gi|60390661|sp|Q5LSV2|RRF_SILPO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|56678283|gb|AAV94949.1| ribosome recycling factor [Ruegeria pomeroyi DSS-3] Length = 187 Score = 180 bits (457), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 85/181 (46%), Positives = 123/181 (67%), Gaps = 1/181 (0%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 +D ++K RM ++ LK + +LRTGR S SML+ ++VEAYG P+NQ+ V V EPR Sbjct: 7 LDTDDLKRRMDGAMANLKTEFASLRTGRASGSMLEPIQVEAYGQMTPINQIGTVNVPEPR 66 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ ++VWDK MV VE+ I ES LG+NP + G ++ +P+PE EERR L KVA YAE Sbjct: 67 MVTINVWDKSMVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRRELTKVAGQYAEH 126 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++++RN+RRDGMD +KK++ G SED E ++Q++TD IK +D+ E K+ EIM Sbjct: 127 ARVAIRNVRRDGMDQIKKAKADG-ISEDDQKFWEAEVQELTDKMIKVVDAALETKQAEIM 185 Query: 185 H 185 Sbjct: 186 Q 186 >gi|260426114|ref|ZP_05780093.1| ribosome recycling factor [Citreicella sp. SE45] gi|260420606|gb|EEX13857.1| ribosome recycling factor [Citreicella sp. SE45] Length = 187 Score = 180 bits (457), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 86/181 (47%), Positives = 123/181 (67%), Gaps = 1/181 (0%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 +D ++K RM +S L+ + +LRTGR S SML+ V+VEAYG P+NQV V V EPR Sbjct: 7 LDTDDLKRRMDGAMSNLRTEFASLRTGRASGSMLEPVQVEAYGQMTPINQVGTVNVPEPR 66 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ ++VWDK +V VE+ I ES LG+NP + G ++ +P+PE EERR L KVA YAE Sbjct: 67 MVTINVWDKGLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRRELTKVAGHYAEH 126 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++++RN+RRDGMD +KK++ G A +D E+++Q ITD IK +D E K++EIM Sbjct: 127 ARVAIRNVRRDGMDQVKKAKADGMAEDDQ-KFWESEVQDITDLYIKKVDEALEHKQEEIM 185 Query: 185 H 185 Sbjct: 186 Q 186 >gi|83592924|ref|YP_426676.1| ribosome recycling factor [Rhodospirillum rubrum ATCC 11170] gi|83575838|gb|ABC22389.1| ribosome recycling factor [Rhodospirillum rubrum ATCC 11170] Length = 191 Score = 180 bits (457), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 84/177 (47%), Positives = 118/177 (66%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 +++ RM + L+KD LRTGR S S+LD V VEAYG +PL QVA V+V EPRM+ V Sbjct: 14 DLRHRMDTAVEVLRKDFAGLRTGRASTSLLDSVMVEAYGQAMPLAQVATVSVPEPRMISV 73 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 VWD+ M +V++ I ++ LGLNP +GQ++R+P+P EERR L KVA YAE+++++ Sbjct: 74 QVWDRGMAKAVDKAIRDAGLGLNPASDGQLIRVPIPPLNEERRTELTKVAGKYAEQTRVA 133 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 VRN+RRDGMD LKK K S+D ++Q +TD TI+ +D K++EIM Sbjct: 134 VRNVRRDGMDQLKKMEKDSAISQDEHKKFGAEVQALTDETIRRLDEALAHKEQEIMQ 190 >gi|114764271|ref|ZP_01443499.1| ribosome recycling factor [Pelagibaca bermudensis HTCC2601] gi|114543219|gb|EAU46236.1| ribosome recycling factor [Roseovarius sp. HTCC2601] Length = 187 Score = 180 bits (456), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 86/181 (47%), Positives = 124/181 (68%), Gaps = 1/181 (0%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 +D ++K RM ++ L+ + +LRTGR S SML+ V+VEAYG P+NQV V V EPR Sbjct: 7 LDTDDLKRRMDGAMANLRTEFASLRTGRASASMLEPVQVEAYGQMTPINQVGTVNVPEPR 66 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ ++VWDK +V VE+ I ES LG+NP + G ++ +P+PE EERR L KVA YAE Sbjct: 67 MVTINVWDKGLVNKVEKAIRESGLGINPQMNGTIIMLPIPELNEERRRELGKVAGQYAEH 126 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++++VRN+RRDGMD +KK++ G SED E ++Q++TD+ IK +D E K++EIM Sbjct: 127 ARVAVRNVRRDGMDQIKKAKADG-MSEDDQKFWETEVQELTDAYIKKVDQSLETKQEEIM 185 Query: 185 H 185 Sbjct: 186 Q 186 >gi|288958464|ref|YP_003448805.1| ribosome recycling factor [Azospirillum sp. B510] gi|288910772|dbj|BAI72261.1| ribosome recycling factor [Azospirillum sp. B510] Length = 185 Score = 180 bits (456), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 86/181 (47%), Positives = 125/181 (69%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 DL ++K RM + +K++ LRTGR S ++L+ V VEAYGS + L +VA V+V EPR+ Sbjct: 5 DLSDLKRRMEGALDSFRKELGGLRTGRASSNLLEPVMVEAYGSRMHLREVATVSVPEPRL 64 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 + V VWD+ M +VE+ I +S LGLNP EGQV+R+P+P+ T+ERR L KVAH YAE+ Sbjct: 65 ISVQVWDRGMTKAVEKAIRDSGLGLNPQAEGQVIRVPLPDLTQERRAELAKVAHKYAEQC 124 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++++RNIRRDGMD LKK+ K+ + ++D + +Q +TD IK +D +K+KEIM Sbjct: 125 RVAIRNIRRDGMDGLKKAEKASEITQDEHKVQADKVQVLTDQHIKLVDDSLAQKEKEIMQ 184 Query: 186 F 186 Sbjct: 185 V 185 >gi|48474234|sp|Q8L1H5|RRF_PARZE RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|20429121|emb|CAD24430.1| ribosome recycling factor [Paracoccus zeaxanthinifaciens] Length = 187 Score = 180 bits (456), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 84/181 (46%), Positives = 120/181 (66%), Gaps = 1/181 (0%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 IDL +++ RM + L+ + +LRTGR S SM++ V+VEAYG P+NQV V V EPR Sbjct: 7 IDLDDLERRMKGAMDSLRAEFASLRTGRASASMVEPVQVEAYGQMTPINQVGTVNVPEPR 66 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ ++VWDK MV VE+ I ES LG+NP G ++ +P+PE EERR L KVA YAE Sbjct: 67 MVTINVWDKGMVGKVEKAIRESGLGINPQTNGTIIMLPIPELNEERRRELTKVAAQYAEH 126 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++++RN+RRDGMD +KK + +G +D E +Q++TD +I N+D E K+ EIM Sbjct: 127 ARVAIRNVRRDGMDQIKKGKANGMPEDDQ-KFWETAVQELTDKSIGNVDQALEAKQAEIM 185 Query: 185 H 185 Sbjct: 186 Q 186 >gi|84500821|ref|ZP_00999056.1| ribosome recycling factor [Oceanicola batsensis HTCC2597] gi|84390888|gb|EAQ03306.1| ribosome recycling factor [Oceanicola batsensis HTCC2597] Length = 187 Score = 179 bits (455), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 86/181 (47%), Positives = 124/181 (68%), Gaps = 1/181 (0%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 +D +++ RM T+S L+ + +LRTGR S SML+ V V+AYGS P+NQV V V EPR Sbjct: 7 LDTDDLQRRMEGTMSNLRTEFASLRTGRASASMLEPVMVDAYGSMTPVNQVGTVNVPEPR 66 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ V+VWDK +V VE+ I ES LG+NP + G ++ +P+PE EERR L KVA YAE Sbjct: 67 MVTVNVWDKNLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRRELGKVAAQYAES 126 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++++RN+RRDGMD +KK++ G SED E+++Q +TD+ K +D E K++EIM Sbjct: 127 ARVAIRNVRRDGMDQIKKAKADG-LSEDDQKFWESEVQDLTDTYTKKVDEALEAKQEEIM 185 Query: 185 H 185 Sbjct: 186 Q 186 >gi|126737623|ref|ZP_01753353.1| ribosome recycling factor [Roseobacter sp. SK209-2-6] gi|126721016|gb|EBA17720.1| ribosome recycling factor [Roseobacter sp. SK209-2-6] Length = 203 Score = 179 bits (455), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 87/181 (48%), Positives = 125/181 (69%), Gaps = 1/181 (0%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 +D ++K RM ++ LK + +LRTGR S SML+ V V+AYGS P+NQV V V EPR Sbjct: 23 LDTDDLKRRMEGAMANLKTEFASLRTGRASGSMLEPVMVDAYGSMTPINQVGTVNVPEPR 82 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ ++VWDK +V VE+ I ES LG+NP + G ++ +P+PE EERR L KVA YAE Sbjct: 83 MVTINVWDKGLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRRELGKVAGQYAEH 142 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++S+RN+RRDGMD +KK++ G SED E ++Q++TD++IK +D+ E K+ EIM Sbjct: 143 ARVSIRNVRRDGMDQIKKAKADG-MSEDDQKFWEAEVQELTDASIKLVDTALETKQAEIM 201 Query: 185 H 185 Sbjct: 202 Q 202 >gi|163736296|ref|ZP_02143715.1| ribosome recycling factor [Phaeobacter gallaeciensis BS107] gi|163741175|ref|ZP_02148567.1| ribosome recycling factor [Phaeobacter gallaeciensis 2.10] gi|161385528|gb|EDQ09905.1| ribosome recycling factor [Phaeobacter gallaeciensis 2.10] gi|161390166|gb|EDQ14516.1| ribosome-recycling factor [Phaeobacter gallaeciensis BS107] Length = 187 Score = 179 bits (455), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 86/182 (47%), Positives = 124/182 (68%), Gaps = 1/182 (0%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 ++D +++ RM ++ LK + +LRTGR S SML+ V V+AYGS P+NQV V V EP Sbjct: 6 ILDTDDLQRRMDGAMANLKTEFASLRTGRASASMLEPVMVDAYGSMTPINQVGTVNVPEP 65 Query: 64 RMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAE 123 RM+ ++VWDK +V VE+ I ES LG+NP + G ++ +P+PE EERR L KVA YAE Sbjct: 66 RMVTINVWDKGLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRRDLTKVAGQYAE 125 Query: 124 KSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +++S+RN+RRDGMD +KK++ G SED E ++Q++TD IK +D+ E K+ EI Sbjct: 126 HARVSIRNVRRDGMDQIKKAKADG-MSEDDQKLWEGEVQELTDKMIKVVDAALETKQAEI 184 Query: 184 MH 185 M Sbjct: 185 MQ 186 >gi|332982468|ref|YP_004463909.1| ribosome recycling factor [Mahella australiensis 50-1 BON] gi|332700146|gb|AEE97087.1| ribosome recycling factor [Mahella australiensis 50-1 BON] Length = 186 Score = 179 bits (454), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 82/172 (47%), Positives = 124/172 (72%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M I LKK++ TLRTGR +P +LD + V+ YG+ P+ Q+ N+T EPR+LV++ WD Sbjct: 13 KMNKVIDVLKKELSTLRTGRANPQILDNITVDYYGASTPITQLGNITSPEPRLLVIAPWD 72 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 +++ +E+ I +S+LG+NP +G+V+R+ +PE TEERR LVK+A E++K++VRNI Sbjct: 73 PKIIKDMEKAIQKSDLGINPSNDGKVIRLVIPELTEERRKELVKLARKMGEEAKVAVRNI 132 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RR+ +DHLKK +K G SED ++DIQK+TD+ I IDS E+K+K+IM Sbjct: 133 RREAIDHLKKQKKDGDISEDEEKRQQDDIQKLTDNKINEIDSIIEQKEKDIM 184 >gi|254477526|ref|ZP_05090912.1| ribosome recycling factor [Ruegeria sp. R11] gi|214031769|gb|EEB72604.1| ribosome recycling factor [Ruegeria sp. R11] Length = 187 Score = 179 bits (454), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 86/182 (47%), Positives = 123/182 (67%), Gaps = 1/182 (0%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 ++D +++ RM + LK + +LRTGR S SML+ V V+AYGS P+NQV V V EP Sbjct: 6 ILDTDDLQRRMDGAMGNLKTEFASLRTGRASASMLEPVMVDAYGSMTPINQVGTVNVPEP 65 Query: 64 RMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAE 123 RM+ V+VWDK +V VE+ I ES LG+NP + G ++ +P+PE EERR L KVA YAE Sbjct: 66 RMVTVNVWDKALVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRRELGKVAGQYAE 125 Query: 124 KSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +++++RN+RRDGMD +KK++ G SED E ++Q++TD IK +D+ E K+ EI Sbjct: 126 SARVAIRNVRRDGMDQIKKAKADG-MSEDDQKLWEGEVQELTDKMIKAVDAALEVKQAEI 184 Query: 184 MH 185 M Sbjct: 185 MQ 186 >gi|83955546|ref|ZP_00964177.1| ribosome recycling factor [Sulfitobacter sp. NAS-14.1] gi|83840190|gb|EAP79365.1| ribosome recycling factor [Sulfitobacter sp. NAS-14.1] Length = 187 Score = 179 bits (454), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 86/182 (47%), Positives = 121/182 (66%), Gaps = 1/182 (0%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 ++D +++ RM I+ L+ + +LRTGR S SML+ V V+AYGS P+NQV V V EP Sbjct: 6 MLDTDDLERRMNGAITSLRTEFASLRTGRASASMLEPVMVDAYGSSTPINQVGTVNVPEP 65 Query: 64 RMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAE 123 RM+ ++VWDK +V VE+ I ES LG+NP + G ++ +P+PE EERR L KVA YAE Sbjct: 66 RMVTINVWDKALVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRTQLTKVAGQYAE 125 Query: 124 KSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +++S+RNIRRDGMD +KK++ G SED E ++Q +T+ I ID E K+ EI Sbjct: 126 SARVSIRNIRRDGMDQIKKAKADG-MSEDDQKVWEGEVQDMTNKFIAQIDEQLESKQAEI 184 Query: 184 MH 185 M Sbjct: 185 MQ 186 >gi|258511403|ref|YP_003184837.1| ribosome recycling factor [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478129|gb|ACV58448.1| ribosome recycling factor [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 187 Score = 179 bits (454), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 82/180 (45%), Positives = 126/180 (70%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +QN+++RM I L+++ T+R GR +PSMLD V VE YG+ +P+NQVA+VT EPR+L Sbjct: 8 IQNLQERMDKAIQNLRREFATVRAGRAAPSMLDHVMVEYYGAQMPVNQVASVTSPEPRLL 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+S WDK M++ +E+ I +S+LGLNP +G V+R+ +P TE+RR LVK AE+++ Sbjct: 68 VISPWDKSMLSEIEKAIQKSDLGLNPANDGNVIRLTIPALTEQRRQELVKQVRKMAEEAR 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRDG + +KK K+G SED V L + +Q++TD I +D E+K+K++ Sbjct: 128 VAIRNIRRDGNEEIKKLEKAGDLSEDDVRRLMDRVQQLTDKAIAQVDRLLEDKEKDVTQV 187 >gi|254462306|ref|ZP_05075722.1| ribosome recycling factor [Rhodobacterales bacterium HTCC2083] gi|206678895|gb|EDZ43382.1| ribosome recycling factor [Rhodobacteraceae bacterium HTCC2083] Length = 187 Score = 179 bits (454), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 87/182 (47%), Positives = 124/182 (68%), Gaps = 1/182 (0%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 ++D ++ RM ++ LK + +LRTGR S SML+ V V+AYGS P+NQV V V EP Sbjct: 6 MLDTDDLHRRMDGAMANLKTEFASLRTGRASGSMLEPVMVDAYGSMTPINQVGTVNVPEP 65 Query: 64 RMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAE 123 RM+ ++VWDK +V VE+ I ES LG+NP + G ++ +P+PE EERR L KVA Y E Sbjct: 66 RMVTINVWDKGLVQKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRRELTKVAAQYTE 125 Query: 124 KSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +++SVRN+RRDGMD +KK++ G SED E ++Q++TD+ IK +D+ E K+KEI Sbjct: 126 SARVSVRNVRRDGMDQIKKAKNDG-LSEDDQKFWEAEVQELTDAAIKAVDAALEVKQKEI 184 Query: 184 MH 185 M Sbjct: 185 MQ 186 >gi|218288327|ref|ZP_03492626.1| ribosome recycling factor [Alicyclobacillus acidocaldarius LAA1] gi|218241686|gb|EED08859.1| ribosome recycling factor [Alicyclobacillus acidocaldarius LAA1] Length = 187 Score = 179 bits (454), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 82/180 (45%), Positives = 126/180 (70%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +QN+++RM I L+++ T+R GR +PSMLD V VE YG+ +P+NQVA+VT EPR+L Sbjct: 8 IQNLQERMDKAIQNLRREFATVRAGRAAPSMLDHVMVEYYGAQMPVNQVASVTSPEPRLL 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+S WDK M++ +E+ I +S+LGLNP +G V+R+ +P TE+RR LVK AE+++ Sbjct: 68 VISPWDKSMLSEIEKAIQKSDLGLNPANDGNVIRLTIPALTEQRRQELVKQVRKMAEEAR 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRDG + +KK K+G SED V L + +Q++TD I +D E+K+K++ Sbjct: 128 VAIRNIRRDGNEEIKKLEKAGDISEDDVRRLMDRVQQLTDKAIAQVDRLLEDKEKDVTQV 187 >gi|312114736|ref|YP_004012332.1| ribosome recycling factor [Rhodomicrobium vannielii ATCC 17100] gi|311219865|gb|ADP71233.1| ribosome recycling factor [Rhodomicrobium vannielii ATCC 17100] Length = 188 Score = 179 bits (453), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 84/182 (46%), Positives = 122/182 (67%), Gaps = 1/182 (0%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVE-AYGSHVPLNQVANVTVLEP 63 D++ I+ RM +++ LK + LRTGR S ++LD + V+ +YG+ +P+ QVA V EP Sbjct: 6 FDIKEIEKRMKSSVASLKSEFGGLRTGRASATLLDPIMVQTSYGAKMPIQQVAAVNAPEP 65 Query: 64 RMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAE 123 R++ V VWDK + VE+ I ES+LGLNP+++G LR+P+PE +ERR LVK+A YAE Sbjct: 66 RLITVQVWDKSNLHGVEKAIRESSLGLNPVIDGLTLRLPIPELNQERRQELVKIAKKYAE 125 Query: 124 KSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 ++++VRN+R+DGMD +KK K GK SED +Q +TD TIK ID+ K+ EI Sbjct: 126 ATRVAVRNVRKDGMDQIKKLEKDGKISEDESGKTSTKVQDLTDKTIKEIDALLATKEHEI 185 Query: 184 MH 185 M Sbjct: 186 MQ 187 >gi|83942310|ref|ZP_00954771.1| ribosome recycling factor [Sulfitobacter sp. EE-36] gi|83846403|gb|EAP84279.1| ribosome recycling factor [Sulfitobacter sp. EE-36] Length = 187 Score = 178 bits (452), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 85/182 (46%), Positives = 121/182 (66%), Gaps = 1/182 (0%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 ++D +++ RM I+ L+ + +LRTGR S SML+ V V+AYGS P+NQV V V EP Sbjct: 6 MLDTDDLERRMNGAIASLRTEFASLRTGRASASMLEPVMVDAYGSSTPINQVGTVNVPEP 65 Query: 64 RMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAE 123 RM+ ++VWDK +V VE+ I ES LG+NP + G ++ +P+PE EERR L KVA YAE Sbjct: 66 RMVTINVWDKALVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRTQLTKVAGQYAE 125 Query: 124 KSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +++S+RN+RRDGMD +KK++ G SED E ++Q +T+ I ID E K+ EI Sbjct: 126 SARVSIRNVRRDGMDQIKKAKADG-MSEDDQKVWEGEVQDMTNKFIAQIDEQLESKQAEI 184 Query: 184 MH 185 M Sbjct: 185 MQ 186 >gi|163747132|ref|ZP_02154488.1| ribosome recycling factor [Oceanibulbus indolifex HEL-45] gi|161379693|gb|EDQ04106.1| ribosome recycling factor [Oceanibulbus indolifex HEL-45] Length = 188 Score = 178 bits (452), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 86/182 (47%), Positives = 120/182 (65%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 ++D +++ RM I+ L+ + +LRTGR S SML+ V VEAYG P+NQV V V EP Sbjct: 6 MLDTDDLERRMNGAIASLRTEFASLRTGRGSASMLEPVMVEAYGQMTPVNQVGTVNVPEP 65 Query: 64 RMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAE 123 RM+ ++VWDK +V VE+ I ES LG+NP + G ++ +P+PE EERR L KVA YAE Sbjct: 66 RMVTINVWDKGLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRTQLTKVAGQYAE 125 Query: 124 KSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +++S+RNIRRDGMD +KK++ G SED E ++Q +T+ I ID E K+ EI Sbjct: 126 HARVSIRNIRRDGMDQIKKAKNDGAMSEDDQKIWEGEVQDLTNRFITLIDDQLETKQAEI 185 Query: 184 MH 185 M Sbjct: 186 MQ 187 >gi|225181371|ref|ZP_03734815.1| ribosome recycling factor [Dethiobacter alkaliphilus AHT 1] gi|225167952|gb|EEG76759.1| ribosome recycling factor [Dethiobacter alkaliphilus AHT 1] Length = 185 Score = 178 bits (452), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 84/177 (47%), Positives = 123/177 (69%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 + ++RM +S LK+D+ TLR GR +PS+LD + V+ YGS +P+NQ+ANV+ EPR+LV+ Sbjct: 8 DAQERMEKAVSALKRDLATLRAGRATPSLLDKIVVDYYGSSMPINQLANVSTPEPRLLVI 67 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 WDK VA VER I +S+LGL P+ +G ++R+ +P+ TEERR LVKV+ AE ++S Sbjct: 68 QPWDKNAVAEVERAILKSDLGLTPVSDGSIIRLAIPQLTEERRKELVKVSKKKAEDGRVS 127 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +RNIRRD + LK+ K + +ED + ++DIQK+TD I DS + K+KEIM Sbjct: 128 IRNIRRDANEDLKRLEKDNEITEDELHKAQDDIQKLTDKFIAEADSVLDAKEKEIME 184 >gi|84686917|ref|ZP_01014801.1| ribosome recycling factor [Maritimibacter alkaliphilus HTCC2654] gi|84665114|gb|EAQ11594.1| ribosome recycling factor [Rhodobacterales bacterium HTCC2654] Length = 188 Score = 178 bits (451), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 83/182 (45%), Positives = 124/182 (68%), Gaps = 1/182 (0%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 ID+ +++ RM I L+ ++ +LRTGR S +ML+ V VEAYG P+NQV V V EPR Sbjct: 8 IDIDDLERRMEGAIGALRTELASLRTGRASAAMLEPVHVEAYGQRTPINQVGTVNVPEPR 67 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ ++VWDK +V +VE+ I ES LG+NP G ++ +P+PE EERR L +VA YAE Sbjct: 68 MVTINVWDKSLVNAVEKAIMESGLGINPQTNGTIIMLPIPELNEERRKELARVAAQYAES 127 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++++RN+RRDGM+ LKK++ +G SED +++Q++TD I N+D E K++EIM Sbjct: 128 ARVAIRNVRRDGMEQLKKAKAAG-MSEDDNKIWHDEVQELTDKYIGNVDKTLETKQEEIM 186 Query: 185 HF 186 Sbjct: 187 QV 188 >gi|149202144|ref|ZP_01879117.1| ribosome recycling factor [Roseovarius sp. TM1035] gi|149144242|gb|EDM32273.1| ribosome recycling factor [Roseovarius sp. TM1035] Length = 187 Score = 178 bits (451), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 86/181 (47%), Positives = 121/181 (66%), Gaps = 1/181 (0%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 ID +++ RM I LK + +LRTGR S SML+ + V+AYG P+NQV V V EPR Sbjct: 7 IDTGDLERRMEGAIGALKTEFASLRTGRASASMLEPIMVDAYGQKTPINQVGTVNVPEPR 66 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ V+VWDK +V VE+ I ES LG+NP + G ++ +P+PE E+RR L KVA YAE Sbjct: 67 MVTVNVWDKGLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEQRRKELTKVAAQYAEH 126 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++++VRN+RRDGMD +KK++ G SED E+++Q +TD IK++D E K+ EIM Sbjct: 127 ARVAVRNVRRDGMDQIKKAKGDG-MSEDDQKFWESEVQSLTDRFIKHVDELLEGKQAEIM 185 Query: 185 H 185 Sbjct: 186 Q 186 >gi|86138423|ref|ZP_01056997.1| ribosome recycling factor [Roseobacter sp. MED193] gi|85824948|gb|EAQ45149.1| ribosome recycling factor [Roseobacter sp. MED193] Length = 187 Score = 178 bits (451), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 86/181 (47%), Positives = 122/181 (67%), Gaps = 1/181 (0%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 +D ++K RM ++ LK + +LRTGR S +ML+ V VEAYGS P+NQV V V EPR Sbjct: 7 LDTDDLKRRMDGAMANLKTEFASLRTGRASGAMLEPVMVEAYGSMTPINQVGTVNVPEPR 66 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ ++VWDK +V VE+ I S LG+NP + G ++ +P+PE EERR L KVA YAE Sbjct: 67 MVTINVWDKGLVGPVEKAIRNSGLGINPQLNGTIIMLPIPELNEERRRELGKVAGQYAEH 126 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++S+RN+RRDGMD +KK++ G SED E+++Q +TD+ IK++D E K+ EIM Sbjct: 127 CRVSIRNVRRDGMDQIKKAKSDG-MSEDDQKFWESEVQDLTDAMIKSVDDALEHKQAEIM 185 Query: 185 H 185 Sbjct: 186 Q 186 >gi|254464577|ref|ZP_05077988.1| ribosome recycling factor [Rhodobacterales bacterium Y4I] gi|206685485|gb|EDZ45967.1| ribosome recycling factor [Rhodobacterales bacterium Y4I] Length = 187 Score = 177 bits (450), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 86/181 (47%), Positives = 123/181 (67%), Gaps = 1/181 (0%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 +D ++K RM ++ L+ + +LRTGR S SML+ V V+AYGS P+NQV V V EPR Sbjct: 7 LDTDDLKRRMDGAMANLRTEFASLRTGRASASMLEPVMVDAYGSMTPINQVGTVNVPEPR 66 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ ++VWDK +V VE+ I ES LG+NP + G ++ +P+PE EERR L KVA YAE Sbjct: 67 MVTINVWDKGLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRRELGKVAGHYAEH 126 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++S+RN+RRDGMD +KK++ G SED E ++Q++TD IK++D E K+ EIM Sbjct: 127 ARVSIRNVRRDGMDQIKKAKADG-MSEDDQKFWEAEVQELTDKMIKHVDEALETKQAEIM 185 Query: 185 H 185 Sbjct: 186 Q 186 >gi|315499832|ref|YP_004088635.1| ribosome recycling factor [Asticcacaulis excentricus CB 48] gi|315417844|gb|ADU14484.1| ribosome recycling factor [Asticcacaulis excentricus CB 48] Length = 185 Score = 177 bits (449), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 86/180 (47%), Positives = 117/180 (65%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 DL KDRM +++ LK D LRTGR S +L+ + V+AYGS + + A ++V EPRM Sbjct: 5 DLNKYKDRMDKSVTALKDDFGGLRTGRASAGLLEGITVDAYGSAMSILSCAAISVPEPRM 64 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 + V+VWDK +V SVE+ I S LGLNP+ +GQ LR+P+P TEERR L K+A YAE+ Sbjct: 65 ISVNVWDKGLVVSVEKAIRNSGLGLNPVTDGQTLRVPIPPLTEERRKELAKIAGKYAEEK 124 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +++VRN+RRD D LKK+ K SED + ++QK TD IK ID + K+ EIM Sbjct: 125 RVAVRNVRRDANDELKKAEKDSLISEDEQKKMTTEVQKFTDEAIKRIDEMLKVKEAEIMQ 184 >gi|326388633|ref|ZP_08210226.1| ribosome recycling factor [Novosphingobium nitrogenifigens DSM 19370] gi|326206884|gb|EGD57708.1| ribosome recycling factor [Novosphingobium nitrogenifigens DSM 19370] Length = 185 Score = 177 bits (449), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 85/179 (47%), Positives = 118/179 (65%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 D +++ RM + L+ D+ LRTGR + ++LD + VE YGS +PLNQVA V+ EPR+ Sbjct: 5 DKADLERRMKGAVDALRHDLSGLRTGRANTALLDPITVEIYGSRMPLNQVATVSAPEPRL 64 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 L V VWDK + VE+ I + LGLNPI +G LR+P+P+ TEERR L K+A YAEK+ Sbjct: 65 LSVQVWDKSSIGPVEKAIRSAGLGLNPINDGNTLRLPIPDLTEERRKELAKLASQYAEKA 124 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +I++RN+RRDGM+ LK + SED E ++QK+TD IK D EK+KEI+ Sbjct: 125 RIAIRNVRRDGMEALKADEAKKEISEDERKRAETEVQKLTDEIIKAADEAASEKEKEIL 183 >gi|254488037|ref|ZP_05101242.1| ribosome recycling factor [Roseobacter sp. GAI101] gi|214044906|gb|EEB85544.1| ribosome recycling factor [Roseobacter sp. GAI101] Length = 187 Score = 177 bits (448), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 85/182 (46%), Positives = 122/182 (67%), Gaps = 1/182 (0%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 ++D +++ RM I+ L+ + +LRTGR S SMLD + V+AYG+ P+NQV V V EP Sbjct: 6 MLDTDDLERRMDGAIASLRTEFASLRTGRGSASMLDPIMVDAYGTKTPINQVGTVNVPEP 65 Query: 64 RMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAE 123 RM+ ++VWDK +V VE+ I ES LG+NP + G ++ +P+PE EERR +L KVA YAE Sbjct: 66 RMVTINVWDKSLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRTSLTKVAGQYAE 125 Query: 124 KSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +++S+RNIRRDGMD +KK++ G SED E ++Q +T+ I ID E K+ EI Sbjct: 126 HARVSIRNIRRDGMDQIKKAKADG-MSEDDQKVWEGEVQDMTNKYIAMIDEQLETKQAEI 184 Query: 184 MH 185 M Sbjct: 185 MQ 186 >gi|296536126|ref|ZP_06898255.1| ribosome recycling factor [Roseomonas cervicalis ATCC 49957] gi|296263538|gb|EFH10034.1| ribosome recycling factor [Roseomonas cervicalis ATCC 49957] Length = 190 Score = 176 bits (446), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 82/176 (46%), Positives = 118/176 (67%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q++ RM + LKK+ LRTGR SP++L+ ++VE YG++ PL+QVANV+V P +L Sbjct: 12 QDLTRRMDGALEVLKKEFSGLRTGRASPALLEPIRVEVYGANQPLSQVANVSVGGPGLLS 71 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V VWD+ +VE I +S LGLNP EGQ +R+P+P T+ERR L K AH YAE +K+ Sbjct: 72 VQVWDRSAAKAVEIAIRDSGLGLNPQTEGQTIRVPLPPLTQERRNELAKQAHKYAEAAKV 131 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +VR +RRDGM+ +K K + +D A +++QK+TD TIK +D EK+K+I Sbjct: 132 AVRGVRRDGMESIKGWEKKSEIGKDDAAKWSDEVQKLTDQTIKKVDELLAEKEKDI 187 >gi|85703599|ref|ZP_01034703.1| ribosome recycling factor [Roseovarius sp. 217] gi|85672527|gb|EAQ27384.1| ribosome recycling factor [Roseovarius sp. 217] Length = 187 Score = 176 bits (445), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 84/181 (46%), Positives = 121/181 (66%), Gaps = 1/181 (0%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 ID +++ RM +S LK + +LRTGR S SML+ + V+AYG P+NQV V V EPR Sbjct: 7 IDTGDLERRMEGAMSALKTEFASLRTGRASASMLEPIMVDAYGQKTPINQVGTVNVPEPR 66 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ ++VWDK +V VE+ I ES LG+NP + G ++ +P+PE E+RR L KVA YAE Sbjct: 67 MVTINVWDKGLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEQRRKELTKVAAQYAEH 126 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++++VRN+RRDGMD +KK++ G SED E ++Q +TD IK++D + K+ EIM Sbjct: 127 ARVAVRNVRRDGMDQIKKAKADG-MSEDDQKFWEGEVQSLTDRFIKHVDEVLDGKQAEIM 185 Query: 185 H 185 Sbjct: 186 Q 186 >gi|89068188|ref|ZP_01155598.1| ribosome recycling factor [Oceanicola granulosus HTCC2516] gi|89046105|gb|EAR52163.1| ribosome recycling factor [Oceanicola granulosus HTCC2516] Length = 186 Score = 176 bits (445), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 84/182 (46%), Positives = 124/182 (68%), Gaps = 2/182 (1%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 ++D +++ RM T++ L+ + +LRTGR S SML+ V+VEAYG P+NQV V V EP Sbjct: 6 ILDTDDLQRRMDGTMNNLRTEFASLRTGRASASMLEPVQVEAYGQMTPINQVGTVNVPEP 65 Query: 64 RMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAE 123 RM+ ++VWDK +V VE+ I ES LG+NP + G ++ +P+PE EERR L KVA YAE Sbjct: 66 RMVTINVWDKGLVNKVEKAIRESGLGINPQMNGTIIMLPIPELNEERRRELTKVAGQYAE 125 Query: 124 KSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +++S+RN+RRDGMD +KK+ + +ED E ++Q++TD IK++D E K+ EI Sbjct: 126 HARVSIRNVRRDGMDQIKKA--ADGMAEDDRKLWEAEVQEMTDKYIKSVDDALEHKQAEI 183 Query: 184 MH 185 M Sbjct: 184 MQ 185 >gi|255263510|ref|ZP_05342852.1| ribosome recycling factor [Thalassiobium sp. R2A62] gi|255105845|gb|EET48519.1| ribosome recycling factor [Thalassiobium sp. R2A62] Length = 187 Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 84/181 (46%), Positives = 122/181 (67%), Gaps = 1/181 (0%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 ID ++ RM ++ L+ + +LRTGR S SML+ V V+AYG+ P+NQV V V EPR Sbjct: 7 IDTDDLTRRMDGAMANLRTEFASLRTGRASGSMLEPVMVDAYGTMTPINQVGTVNVPEPR 66 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ ++VWDK +V VE+ I ES LG+NP + G ++ +P+PE EERR L KVA +YAE Sbjct: 67 MVTINVWDKGLVNKVEKAIRESGLGINPQMNGTIIMLPIPELNEERRRELTKVAASYAEN 126 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++SVRN+RRDGM +KK + +G +D E ++Q++TDS IK +D E K++EIM Sbjct: 127 ARVSVRNVRRDGMVQIKKGKAAGMPEDDQ-KLWETEVQELTDSFIKQVDGALETKQEEIM 185 Query: 185 H 185 Sbjct: 186 Q 186 >gi|190360297|sp|Q0BTL9|RRF_GRABC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor Length = 188 Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 80/176 (45%), Positives = 118/176 (67%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q++ RM + L+++ LR GR SP++L+ V+V+AYGS VPL QV N+ V E RML Sbjct: 10 QDLTRRMDGALETLRREFAGLRAGRASPALLEPVRVDAYGSEVPLTQVGNIGVPESRMLT 69 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V VWD+ +V++VE+ I + LGLNP EGQ++R+P+P TEERR L K A YAE +++ Sbjct: 70 VQVWDRSLVSAVEKAIRDCGLGLNPQTEGQLIRVPLPMLTEERRNELAKAAGRYAESTRV 129 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 ++R +RRDGMD +K K + ED + +++QK+TD IK +D EK+K+I Sbjct: 130 AIRAVRRDGMDQIKGHEKKSEIGEDEAKTWSDEVQKLTDHYIKRVDDALVEKEKDI 185 >gi|85708126|ref|ZP_01039192.1| ribosome recycling factor [Erythrobacter sp. NAP1] gi|85689660|gb|EAQ29663.1| ribosome recycling factor [Erythrobacter sp. NAP1] Length = 185 Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 85/179 (47%), Positives = 122/179 (68%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 D + + RM + LK D+ LRTGR + S+LD V VE YGS +PL VA V EPRM Sbjct: 5 DKADTERRMNGAVESLKGDLSGLRTGRANTSLLDPVVVEVYGSMMPLASVATVNTPEPRM 64 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 + V VWDK V++VE+GI ++NLGLNP+ +GQ +R+P+P+ TEERR L K+A YAEK+ Sbjct: 65 ISVQVWDKSNVSAVEKGITKANLGLNPMTDGQTIRLPMPDLTEERRKELAKLAGQYAEKA 124 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 KI++RN+RRD M+ LK K + SED +E+++QK+TD + + D +K++EI+ Sbjct: 125 KIAIRNVRRDAMESLKTDEKKKEISEDDRKRMEDEVQKLTDKYVADTDEAAAKKEQEIL 183 >gi|15892120|ref|NP_359834.1| ribosome recycling factor [Rickettsia conorii str. Malish 7] gi|20139894|sp|Q92J72|RRF_RICCN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|15619247|gb|AAL02735.1| ribosome recycling factor [Rickettsia conorii str. Malish 7] Length = 186 Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 86/177 (48%), Positives = 124/177 (70%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N++++M + L ++ LRTGR S ++LD V VEAYGS +PL+QVA+++ + R + Sbjct: 8 KNLQEKMEKALKVLDHELKGLRTGRASVNLLDSVTVEAYGSKMPLSQVASLSTPDARTIN 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V VWDK MV+SVE+GI +NLGL P +GQ++R+P+P TEERR ALVK+AH Y E +KI Sbjct: 68 VQVWDKSMVSSVEKGITIANLGLTPATDGQLIRLPIPALTEERRTALVKLAHKYGEDTKI 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 S+RNIRRDG + LKK K ++D SL +QK+TD +DS ++K++EIM Sbjct: 128 SLRNIRRDGNEALKKLEKDNVIAKDEHHSLSEQVQKLTDDYSSKVDSVIKQKEQEIM 184 >gi|114327599|ref|YP_744756.1| ribosome recycling factor [Granulibacter bethesdensis CGDNIH1] gi|114315773|gb|ABI61833.1| ribosome recycling factor (RRF) [Granulibacter bethesdensis CGDNIH1] Length = 202 Score = 175 bits (444), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 80/176 (45%), Positives = 118/176 (67%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q++ RM + L+++ LR GR SP++L+ V+V+AYGS VPL QV N+ V E RML Sbjct: 24 QDLTRRMDGALETLRREFAGLRAGRASPALLEPVRVDAYGSEVPLTQVGNIGVPESRMLT 83 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V VWD+ +V++VE+ I + LGLNP EGQ++R+P+P TEERR L K A YAE +++ Sbjct: 84 VQVWDRSLVSAVEKAIRDCGLGLNPQTEGQLIRVPLPMLTEERRNELAKAAGRYAESTRV 143 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 ++R +RRDGMD +K K + ED + +++QK+TD IK +D EK+K+I Sbjct: 144 AIRAVRRDGMDQIKGHEKKSEIGEDEAKTWSDEVQKLTDHYIKRVDDALVEKEKDI 199 >gi|89054949|ref|YP_510400.1| ribosome recycling factor [Jannaschia sp. CCS1] gi|88864498|gb|ABD55375.1| ribosome recycling factor [Jannaschia sp. CCS1] Length = 243 Score = 175 bits (443), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 85/182 (46%), Positives = 122/182 (67%), Gaps = 4/182 (2%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 ++D +++ RM I+ L+ + +LRTGR S SML+ V V+AYG+ P+NQV V V EP Sbjct: 65 MLDTDDLERRMEGAIASLRTEFASLRTGRASASMLEPVMVDAYGAMTPINQVGTVNVPEP 124 Query: 64 RMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAE 123 RM+ V+VWDK +V VE+ I ES LG+NP + G ++ +P+PE EERR L KVA YAE Sbjct: 125 RMVTVNVWDKGLVNKVEKAIRESGLGINPQMNGTIIMLPIPELNEERRRELTKVAGTYAE 184 Query: 124 KSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 ++++VRN+RRDGMD +KK+ SED E +Q++TD+ IK +D E K++EI Sbjct: 185 NARVAVRNVRRDGMDQIKKA----DTSEDDAKFWEGAVQELTDTFIKRVDDQLETKQEEI 240 Query: 184 MH 185 M Sbjct: 241 MQ 242 >gi|190360293|sp|Q28PI7|RRF_JANSC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor Length = 184 Score = 175 bits (443), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 85/182 (46%), Positives = 122/182 (67%), Gaps = 4/182 (2%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 ++D +++ RM I+ L+ + +LRTGR S SML+ V V+AYG+ P+NQV V V EP Sbjct: 6 MLDTDDLERRMEGAIASLRTEFASLRTGRASASMLEPVMVDAYGAMTPINQVGTVNVPEP 65 Query: 64 RMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAE 123 RM+ V+VWDK +V VE+ I ES LG+NP + G ++ +P+PE EERR L KVA YAE Sbjct: 66 RMVTVNVWDKGLVNKVEKAIRESGLGINPQMNGTIIMLPIPELNEERRRELTKVAGTYAE 125 Query: 124 KSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 ++++VRN+RRDGMD +KK+ SED E +Q++TD+ IK +D E K++EI Sbjct: 126 NARVAVRNVRRDGMDQIKKA----DTSEDDAKFWEGAVQELTDTFIKRVDDQLETKQEEI 181 Query: 184 MH 185 M Sbjct: 182 MQ 183 >gi|126729706|ref|ZP_01745519.1| ribosome recycling factor [Sagittula stellata E-37] gi|126709825|gb|EBA08878.1| ribosome recycling factor [Sagittula stellata E-37] Length = 186 Score = 174 bits (442), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 84/181 (46%), Positives = 121/181 (66%), Gaps = 2/181 (1%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 +D ++ RM + L+ + +LRTGR S SML+ + V+AYG+ P+NQV V V EPR Sbjct: 7 LDTDDLTRRMEGAMGSLRTEFASLRTGRASGSMLEPIMVDAYGAMTPINQVGTVNVPEPR 66 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ ++VWDK +V VE+ I ES LG+NP + G ++ +P+PE EERR L KVA YAE Sbjct: 67 MVTINVWDKSLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRRELSKVAGQYAEH 126 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++S+RNIRRDGMD +KK + SED E+++Q +TDS IK +D+ E K++EIM Sbjct: 127 ARVSIRNIRRDGMDQIKKHKDD--MSEDDAKLWESEVQDLTDSYIKKVDAALETKQEEIM 184 Query: 185 H 185 Sbjct: 185 Q 185 >gi|34580849|ref|ZP_00142329.1| ribosome recycling factor [Rickettsia sibirica 246] gi|28262234|gb|EAA25738.1| ribosome recycling factor [Rickettsia sibirica 246] Length = 186 Score = 174 bits (442), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 86/177 (48%), Positives = 123/177 (69%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N++++M + L ++ LRTGR S ++LD V VEAYGS +PL+QVA+++ + R + Sbjct: 8 KNLQEKMEKALKVLDHELKGLRTGRASVNLLDSVTVEAYGSKMPLSQVASLSTPDARTIN 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V VWDK MV+SVE+GI +NLGL P +GQ++R+P+P TEERR LVK+AH Y E +KI Sbjct: 68 VQVWDKSMVSSVEKGITIANLGLTPATDGQLIRLPIPALTEERRTELVKLAHKYGEDTKI 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 S+RNIRRDG + LKK K ++D SL +QK+TD +DS ++KK+EIM Sbjct: 128 SLRNIRRDGNEALKKLEKDNVIAKDEHHSLSEQVQKLTDDYSSKVDSVIKQKKQEIM 184 >gi|126736320|ref|ZP_01752062.1| ribosome recycling factor [Roseobacter sp. CCS2] gi|126714141|gb|EBA11010.1| ribosome recycling factor [Roseobacter sp. CCS2] Length = 187 Score = 174 bits (442), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 85/181 (46%), Positives = 122/181 (67%), Gaps = 1/181 (0%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 +D ++ RM I+ L+ ++ +LRTGR S SML+ V V+AYGS P+NQV V V EPR Sbjct: 7 LDTDDLTRRMEGAIANLRVELASLRTGRASGSMLEPVMVDAYGSMTPINQVGTVNVPEPR 66 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ ++VWDK +V VE+ I ES LG+NP + G ++ +P+PE EERR L KVA Y E Sbjct: 67 MVTINVWDKGLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRRELTKVAGQYGES 126 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++S+RN+RRDGMD +KK++ G SED E+ +Q++TD+ IK +D E K+ EIM Sbjct: 127 ARVSIRNLRRDGMDKIKKAKTDG-LSEDDQKFWESTVQEVTDAHIKIVDETIESKQAEIM 185 Query: 185 H 185 Sbjct: 186 Q 186 >gi|84516072|ref|ZP_01003432.1| ribosome recycling factor [Loktanella vestfoldensis SKA53] gi|84509768|gb|EAQ06225.1| ribosome recycling factor [Loktanella vestfoldensis SKA53] Length = 187 Score = 174 bits (441), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 84/181 (46%), Positives = 122/181 (67%), Gaps = 1/181 (0%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 +D ++ RM I+ L+ ++ +LRTGR S SML+ + V+AYGS P+NQV V V EPR Sbjct: 7 LDTDDLARRMDGAIANLRVELASLRTGRASGSMLEPIMVDAYGSPTPINQVGTVNVPEPR 66 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ ++VWDK +V VE+ I +S LG+NP + G ++ +P+PE EERR L KVA YAE+ Sbjct: 67 MVTINVWDKALVGKVEKAIRDSGLGINPQLNGTIIMLPIPELNEERRRELTKVAGNYAEQ 126 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++S+RN+RRDGMD +KK++ G SED E +Q+ITD+ K +D E K+ EIM Sbjct: 127 ARVSIRNLRRDGMDQIKKAKSDG-LSEDDQKFWETTVQEITDAHTKLVDETLETKQAEIM 185 Query: 185 H 185 Sbjct: 186 Q 186 >gi|310816031|ref|YP_003963995.1| ribosome recycling factor [Ketogulonicigenium vulgare Y25] gi|308754766|gb|ADO42695.1| ribosome recycling factor [Ketogulonicigenium vulgare Y25] Length = 187 Score = 174 bits (440), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 82/181 (45%), Positives = 122/181 (67%), Gaps = 1/181 (0%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 +D ++ RM I+ L+ + +LRTGR S SML+ + V+AYG P+NQ+ + V EPR Sbjct: 7 LDTDDLTRRMDGAIAALRTEFASLRTGRASGSMLEPIVVDAYGQTTPINQLGTINVPEPR 66 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ ++VWDK MV+ VE+ I +S LG+NP G ++ +P+PE EERR L KVA YAE Sbjct: 67 MVTINVWDKGMVSKVEKAIRDSGLGINPQTNGTIIMLPIPELNEERRRELTKVAAGYAEH 126 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++++VRN+RRDGMD +KK++ G SED V E+++Q++TD IK +D + K+ EIM Sbjct: 127 ARVAVRNLRRDGMDKIKKAKSDG-LSEDDVKFWESEVQELTDKFIKLVDQTLDTKQAEIM 185 Query: 185 H 185 Sbjct: 186 Q 186 >gi|159044043|ref|YP_001532837.1| ribosome recycling factor [Dinoroseobacter shibae DFL 12] gi|190360241|sp|A8LK37|RRF_DINSH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|157911803|gb|ABV93236.1| ribosome recycling factor [Dinoroseobacter shibae DFL 12] Length = 188 Score = 173 bits (439), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 83/175 (47%), Positives = 116/175 (66%), Gaps = 1/175 (0%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K RM ++ L+ + +LRTGR S SML+ V V+AYG P+NQV V V EPRM+ ++V Sbjct: 14 KRRMDGALASLRTEFASLRTGRASASMLEPVMVDAYGQKTPINQVGTVNVPEPRMVTINV 73 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 WDK +V VE+ I ES LG+NP + G ++ +P+PE EERR L KVA YAE +++++R Sbjct: 74 WDKSLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRRELTKVAAQYAEHARVAIR 133 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 N+RRDGMD LKK + G SED +++Q +TD+ IK +D E K+ EIM Sbjct: 134 NVRRDGMDQLKKFKADG-MSEDDHKIWSDEVQALTDAEIKKVDDALENKQSEIMQ 187 >gi|304320071|ref|YP_003853714.1| putative ribosome recycling factor [Parvularcula bermudensis HTCC2503] gi|303298974|gb|ADM08573.1| putative ribosome recycling factor [Parvularcula bermudensis HTCC2503] Length = 183 Score = 173 bits (438), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 84/181 (46%), Positives = 120/181 (66%), Gaps = 3/181 (1%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 D++ ++ RM I+ LK + LR+GR + S+LD V V AYGS +PLNQV V V + R Sbjct: 6 DMKELEKRMDGAIASLKSEYAGLRSGRATISLLDPVTVNAYGSEMPLNQVGTVGVPDART 65 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 L V VWDK +V++VE+GI ES L LNP+ +GQ +R+P+P TEERR L K+ YAE + Sbjct: 66 LSVQVWDKGLVSAVEKGIRESGLDLNPVTDGQTVRVPMPPMTEERRRDLAKLTGKYAEAA 125 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 K+++RN+RRDGM+ KK+ SED + ++QK+TD+ +K ID +K+KEIM Sbjct: 126 KVAIRNVRRDGMEEAKKAE---GVSEDDQKRMSEEVQKLTDAKVKEIDQMHAQKEKEIMQ 182 Query: 186 F 186 Sbjct: 183 V 183 >gi|238650359|ref|YP_002916211.1| ribosome recycling factor [Rickettsia peacockii str. Rustic] gi|259494554|sp|C4K0R2|RRF_RICPU RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238624457|gb|ACR47163.1| ribosome recycling factor [Rickettsia peacockii str. Rustic] Length = 186 Score = 173 bits (438), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 85/177 (48%), Positives = 123/177 (69%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N++++M + L ++ LRTGR S ++LD V VEAYGS +PL+QVA+++ + R + Sbjct: 8 KNLQEKMEKALKVLDHELKGLRTGRASVNLLDSVTVEAYGSKMPLSQVASLSTPDARTIN 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V VWDK MV+SVE+GI +NLGL P +GQ++R+P+P TEERR LVK+AH Y E +KI Sbjct: 68 VQVWDKSMVSSVEKGITIANLGLTPATDGQLIRLPIPALTEERRTELVKLAHKYGEDTKI 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 S+RNIRRDG + LKK K ++D SL +QK+TD +DS ++K++EIM Sbjct: 128 SLRNIRRDGNEALKKLEKDNVIAKDEHHSLSEQVQKLTDDYSSKVDSVIKQKEQEIM 184 >gi|67459519|ref|YP_247143.1| ribosome recycling factor [Rickettsia felis URRWXCal2] gi|75536074|sp|Q4UKF3|RRF_RICFE RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|67005052|gb|AAY61978.1| Ribosome recycling factor [Rickettsia felis URRWXCal2] Length = 186 Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 85/177 (48%), Positives = 123/177 (69%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N++++M + L ++ LRTGR S ++LD V VEAYGS +PL+QVA+++ + R + Sbjct: 8 KNLQEKMDKALKVLDHELKGLRTGRASVNLLDSVTVEAYGSKMPLSQVASLSTPDARTIN 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V VWDK MV+SVE+GI +NLGL P +GQ++R+P+P TEERR LVK+AH Y E +KI Sbjct: 68 VQVWDKSMVSSVEKGITIANLGLTPATDGQLIRLPIPALTEERRKELVKLAHKYGEDTKI 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 S+RNIRRDG + LKK K ++D SL +QK+TD +DS ++K++EIM Sbjct: 128 SLRNIRRDGNEELKKLEKDNIIAKDEHHSLSEQVQKLTDDYSSKVDSAIKQKEQEIM 184 >gi|330814009|ref|YP_004358248.1| ribosome recycling factor [Candidatus Pelagibacter sp. IMCC9063] gi|327487104|gb|AEA81509.1| ribosome recycling factor [Candidatus Pelagibacter sp. IMCC9063] Length = 173 Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 84/171 (49%), Positives = 119/171 (69%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M +TI L +D+ T+RTGR SMLDL+KVE YG +P+NQVA ++ E ++L V VWD Sbjct: 1 MQNTIQSLTQDLSTIRTGRAHVSMLDLIKVEVYGQKMPINQVATISTPESQLLTVQVWDA 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 V V++ + ES+L +NP V+GQ++R+PVP+ +EERRL L+K+ +EK KIS+RNIR Sbjct: 61 ANVKFVDKALRESDLNINPTVDGQIVRVPVPKLSEERRLDLIKIVKNQSEKIKISIRNIR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 R+GMD LK K+ SED A L N++Q+ITD I +D EK++EI+ Sbjct: 121 REGMDLLKNLLKNKDISEDDNAKLSNELQQITDKFINEVDKKISEKEQEII 171 >gi|117925140|ref|YP_865757.1| ribosome recycling factor [Magnetococcus sp. MC-1] gi|166230797|sp|A0L8Q8|RRF_MAGSM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|117608896|gb|ABK44351.1| ribosome recycling factor [Magnetococcus sp. MC-1] Length = 185 Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 84/180 (46%), Positives = 128/180 (71%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +++++ RM +++ LK ++ T+RTGR S S+LD V V AYGS +PLNQVA++TV E RM+ Sbjct: 6 IKDLEQRMNKSLAALKDELATVRTGRASTSLLDAVMVNAYGSMMPLNQVASMTVPEARMI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V WDK + ++E+ I +++LGLNP +GQ++R+P+PE TEERR LVK+ H Y+E K Sbjct: 66 NVQPWDKGQLGAIEKAIRDADLGLNPSNDGQIVRVPLPELTEERRKDLVKLVHKYSEACK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I+VRNIRRDG++ L+K+ K+ + S+D + + E +Q+ TD IK ID K+ +IM Sbjct: 126 IAVRNIRRDGIEGLRKAEKNKEISQDEMHTQEKLVQESTDKFIKLIDEAIVSKEADIMQV 185 >gi|332976811|gb|EGK13639.1| ribosome recycling factor [Desmospora sp. 8437] Length = 185 Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 84/174 (48%), Positives = 116/174 (66%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM I LK+++ ++R GR +PS+LD V VE YGS +PLNQ+AN++ EPR+LVV WD Sbjct: 12 RMEKAIQALKRELASIRAGRATPSLLDKVTVECYGSEMPLNQLANISTPEPRLLVVQPWD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K + VER I +S+LGL P +G ++RI +P TEERR LVKV E++K+++RNI Sbjct: 72 KSTLGDVERAILKSDLGLTPNNDGNLIRITIPALTEERRGELVKVVKKTGEEAKVAIRNI 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD D +KK K G+ SED +++IQK+TD I+ D E K+KEIM Sbjct: 132 RRDANDEMKKLEKKGELSEDEARRGQDEIQKLTDRFIQETDKVVETKEKEIMEV 185 >gi|229586395|ref|YP_002844896.1| ribosome recycling factor [Rickettsia africae ESF-5] gi|259494553|sp|C3PMJ3|RRF_RICAE RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|228021445|gb|ACP53153.1| Ribosome recycling factor [Rickettsia africae ESF-5] Length = 186 Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 85/177 (48%), Positives = 123/177 (69%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N++++M + L ++ LRTGR S ++LD V VEAYGS +PL+QVA+++ + R + Sbjct: 8 KNLQEKMEKALKVLDHELKGLRTGRASVNLLDSVTVEAYGSKMPLSQVASLSTPDARTIN 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V VWDK MV+SVE+GI +NLGL P +GQ++R+P+P TEERR LVK+AH Y E +KI Sbjct: 68 VQVWDKSMVSSVEKGITIANLGLTPATDGQLIRLPIPALTEERRTELVKLAHKYGEDTKI 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 S+RNIRRDG + LKK K ++D SL +QK+TD +DS ++K++EIM Sbjct: 128 SLRNIRRDGNEALKKLAKDNVIAKDEHHSLSEQVQKLTDDYSNKVDSVIKQKEQEIM 184 >gi|293374703|ref|ZP_06621011.1| ribosome recycling factor [Turicibacter sanguinis PC909] gi|325840609|ref|ZP_08167090.1| ribosome recycling factor [Turicibacter sp. HGF1] gi|292646617|gb|EFF64619.1| ribosome recycling factor [Turicibacter sanguinis PC909] gi|325490258|gb|EGC92591.1| ribosome recycling factor [Turicibacter sp. HGF1] Length = 185 Score = 172 bits (437), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 83/180 (46%), Positives = 122/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L N + RM I LK++ LRTGR S ++LD ++V+ YG P+NQ+A VTV EPR L Sbjct: 6 LSNAEARMSKAIDSLKREFSVLRTGRASGALLDNIQVDYYGMPSPINQMAQVTVPEPRQL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV +DK M+ ++ER I+E+N+GL P +G+V+R+ VP TEERR L K +AE +K Sbjct: 66 VVKPYDKSMLQAIERAINEANIGLTPNNDGEVIRLNVPALTEERRRELAKKVKGFAEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RN+RRD D LKK +K+G+ +ED + D+QK+TD IK +D+ +EK+K+IM Sbjct: 126 VAIRNVRRDANDELKKLQKNGEITEDALKGYTEDVQKLTDKKIKEVDATADEKEKDIMSI 185 >gi|83951884|ref|ZP_00960616.1| ribosome recycling factor [Roseovarius nubinhibens ISM] gi|83836890|gb|EAP76187.1| ribosome recycling factor [Roseovarius nubinhibens ISM] Length = 187 Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 82/181 (45%), Positives = 119/181 (65%), Gaps = 1/181 (0%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 ++ ++ RM ++ L+ + +LRTGR S SML+ V V+AYG P+NQV V V EPR Sbjct: 7 LNTDDLTRRMDGAMASLRTEFASLRTGRASASMLEPVMVDAYGQQTPINQVGTVNVPEPR 66 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ ++VWDK +V VE+ I ES LG+NP + G ++ +P+PE EERR L KVA YAE Sbjct: 67 MVTINVWDKGLVNKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRRELGKVASQYAES 126 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++++RN+RRDGMD +KK++ G SED E +Q++TDS I +D E K+ EIM Sbjct: 127 ARVAIRNVRRDGMDQIKKAKADG-MSEDDQKFWETSVQELTDSFIAKVDEALEHKQAEIM 185 Query: 185 H 185 Sbjct: 186 Q 186 >gi|239948540|ref|ZP_04700293.1| ribosome recycling factor [Rickettsia endosymbiont of Ixodes scapularis] gi|239922816|gb|EER22840.1| ribosome recycling factor [Rickettsia endosymbiont of Ixodes scapularis] Length = 202 Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 85/177 (48%), Positives = 123/177 (69%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N++++M + L ++ LRTGR S ++LD V VEAYGS +PL+QVA+++ + R + Sbjct: 24 KNLQEKMEKALKVLDHELKGLRTGRASVNLLDSVTVEAYGSKMPLSQVASLSTPDARTIN 83 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V VWDK MV+SVE+GI +NLGL P +GQ++R+P+P TEERR LVK+AH Y E +KI Sbjct: 84 VQVWDKSMVSSVEKGITIANLGLTPATDGQLIRLPIPALTEERRKELVKLAHKYGEDTKI 143 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 S+RNIRRDG + LKK K ++D SL +QK+TD +DS ++K++EIM Sbjct: 144 SLRNIRRDGNEELKKLEKDNVIAKDEHHSLSEQVQKLTDDYSSKVDSVIKQKEQEIM 200 >gi|332298055|ref|YP_004439977.1| Ribosome-recycling factor [Treponema brennaborense DSM 12168] gi|332181158|gb|AEE16846.1| Ribosome-recycling factor [Treponema brennaborense DSM 12168] Length = 183 Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 83/173 (47%), Positives = 119/173 (68%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM TI+ LK D TLRTGR S ++ D V+V+ YG+ PLNQV+ ++V E R +V+ +D Sbjct: 10 RMEKTIAALKDDFKTLRTGRASAAIFDKVRVDYYGTPTPLNQVSTISVPEARSIVIQPFD 69 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K ++ +E+ I +S LGLNP +G+V+RI +P T +RR LVK A A AE S++++RNI Sbjct: 70 KSLIGEIEKAIQKSELGLNPSNDGKVIRIAIPPLTADRRKELVKQAKATAENSRVAIRNI 129 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 RRDG D LKK +K G +ED + + E ++QK TD I++I+ EEK+KEIM Sbjct: 130 RRDGNDDLKKQQKDGSLTEDGLKTAETELQKSTDKFIQDINKILEEKEKEIME 182 >gi|254439528|ref|ZP_05053022.1| ribosome recycling factor [Octadecabacter antarcticus 307] gi|198254974|gb|EDY79288.1| ribosome recycling factor [Octadecabacter antarcticus 307] Length = 187 Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 84/182 (46%), Positives = 119/182 (65%), Gaps = 1/182 (0%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 ++D ++ RM I+ L+ + +LRTGR S S+L+ + V+AYGS P+NQV V V E Sbjct: 6 ILDTDDLTRRMDGAIANLRVEFASLRTGRASASILEPIMVDAYGSQTPINQVGTVNVPES 65 Query: 64 RMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAE 123 RM+ V+VWDK +V VE+ I ES LG+NP + G ++ +P+PE EERR L KVA YAE Sbjct: 66 RMVTVNVWDKGLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRTQLTKVAGTYAE 125 Query: 124 KSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 ++S+RN+RRDGMD +KK++ G SED E ++Q +T+ IK ID E K+ EI Sbjct: 126 NGRVSIRNLRRDGMDQIKKAKNDG-ISEDDQKFWEGEMQGLTNDYIKRIDDQLEIKQAEI 184 Query: 184 MH 185 M Sbjct: 185 MQ 186 >gi|56964004|ref|YP_175735.1| ribosome recycling factor [Bacillus clausii KSM-K16] gi|60390232|sp|Q5WFT1|RRF_BACSK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|56910247|dbj|BAD64774.1| ribosome recycling factor [Bacillus clausii KSM-K16] Length = 185 Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 84/178 (47%), Positives = 124/178 (69%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 + K RM I L +++ LR GR +P++LD V VE YG+ PLNQ+A+VTV E R+L++ Sbjct: 8 DAKTRMDKAIDVLSRELAKLRAGRANPALLDRVTVEYYGAQTPLNQLASVTVPEARLLLI 67 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 + +DK VAS+E+ I +S+LGL P +GQV+RI +P TEERR LV++ AE+SK++ Sbjct: 68 TPYDKTAVASIEKAILKSDLGLTPSNDGQVIRIAIPPLTEERRKDLVRLVSKTAEESKVA 127 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 VRNIRRD D LKK +K G+ +ED + S +DIQK+TD+ + ID ++K++EI+ Sbjct: 128 VRNIRRDANDELKKLQKDGEMTEDELRSATDDIQKLTDTYVAKIDEKAKQKEQEIIEV 185 >gi|157964221|ref|YP_001499045.1| ribosome recycling factor [Rickettsia massiliae MTU5] gi|157843997|gb|ABV84498.1| Ribosome recycling factor [Rickettsia massiliae MTU5] Length = 188 Score = 172 bits (435), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 85/177 (48%), Positives = 122/177 (68%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N++ +M + L ++ LRTGR S ++LD V VEAYGS +PL+QVA+++ + R + Sbjct: 10 KNLQGKMEKALKVLDHELKGLRTGRASINLLDSVTVEAYGSKMPLSQVASLSTPDARTIN 69 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V VWDK MV+SVE+GI +NLGL P +GQ++R+P+P TEERR LVK+AH Y E +KI Sbjct: 70 VQVWDKSMVSSVEKGITIANLGLTPATDGQLIRLPIPTLTEERRQELVKLAHKYGEDTKI 129 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 S+RNIRRDG + LKK K ++D SL +QK+TD +DS ++K++EIM Sbjct: 130 SLRNIRRDGNEELKKLEKDNVIAKDEHHSLSEQVQKLTDDYSSKVDSVIKQKEQEIM 186 >gi|119386701|ref|YP_917756.1| ribosome recycling factor [Paracoccus denitrificans PD1222] gi|166230812|sp|A1B966|RRF_PARDP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|119377296|gb|ABL72060.1| ribosome recycling factor [Paracoccus denitrificans PD1222] Length = 187 Score = 172 bits (435), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 79/181 (43%), Positives = 120/181 (66%), Gaps = 1/181 (0%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 ID +++ RM + L+ + +LRTGR S SM++ + V+AYGS P+NQ+ V V EPR Sbjct: 7 IDTDDLERRMKGAMESLRHEFASLRTGRASASMVEPIMVDAYGSPTPINQIGTVNVPEPR 66 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ +++WDK +V E+ I ES LG+NP + G ++ +P+PE EERR L +VA YAE Sbjct: 67 MVTINIWDKGLVGKAEKAIRESGLGINPQLNGTIIMLPIPELNEERRRELTRVAAQYAEH 126 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++++RN+RRDGMD +KK++ SG SED E +Q++TD I ++D E K+ EIM Sbjct: 127 ARVAIRNVRRDGMDQIKKAKSSG-MSEDDQKFWEGAVQELTDKMIASVDQALEAKQAEIM 185 Query: 185 H 185 Sbjct: 186 Q 186 >gi|154253632|ref|YP_001414456.1| ribosome recycling factor [Parvibaculum lavamentivorans DS-1] gi|190360245|sp|A7HY16|RRF_PARL1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|154157582|gb|ABS64799.1| ribosome recycling factor [Parvibaculum lavamentivorans DS-1] Length = 187 Score = 172 bits (435), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 81/184 (44%), Positives = 118/184 (64%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 + D+ + + RM + LK++ LRTGR + S+L+ + VEAYG +P+NQV + V Sbjct: 3 DTTFDIDDTERRMRGALQSLKQEFAGLRTGRATASLLEPIVVEAYGQSMPINQVGTIGVP 62 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 EPRML V VWDK M+++VE+ I S LGLNP V+G ++R+P+PE +ERR L K+A Y Sbjct: 63 EPRMLTVQVWDKGMISAVEKAIRSSGLGLNPNVDGMLIRLPIPELNQERRAELTKIAAKY 122 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 E+++I+VRN+RRD MD LK+ K S+D S +QK+TD I ID+ K+ Sbjct: 123 TEQARIAVRNVRRDAMDELKRLEKDSHMSQDDHKSWSEKVQKLTDKVIGEIDAALAHKEA 182 Query: 182 EIMH 185 +IM Sbjct: 183 DIMQ 186 >gi|190360295|sp|A8F0R2|RRF_RICM5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor Length = 186 Score = 171 bits (434), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 85/177 (48%), Positives = 122/177 (68%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N++ +M + L ++ LRTGR S ++LD V VEAYGS +PL+QVA+++ + R + Sbjct: 8 KNLQGKMEKALKVLDHELKGLRTGRASINLLDSVTVEAYGSKMPLSQVASLSTPDARTIN 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V VWDK MV+SVE+GI +NLGL P +GQ++R+P+P TEERR LVK+AH Y E +KI Sbjct: 68 VQVWDKSMVSSVEKGITIANLGLTPATDGQLIRLPIPTLTEERRQELVKLAHKYGEDTKI 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 S+RNIRRDG + LKK K ++D SL +QK+TD +DS ++K++EIM Sbjct: 128 SLRNIRRDGNEELKKLEKDNVIAKDEHHSLSEQVQKLTDDYSSKVDSVIKQKEQEIM 184 >gi|229918658|ref|YP_002887304.1| ribosome recycling factor [Exiguobacterium sp. AT1b] gi|229470087|gb|ACQ71859.1| ribosome recycling factor [Exiguobacterium sp. AT1b] Length = 186 Score = 171 bits (434), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 85/179 (47%), Positives = 122/179 (68%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ +++M S LK+D TLRTGR S S+LD V+V+ YG PLNQVAN+ E R+L Sbjct: 7 LKTAEEKMEKAHSSLKRDFGTLRTGRASASILDPVQVDYYGVPTPLNQVANINTPEARLL 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WDK MV+ VE+ I +++LGL+P +G V+R+ +P TEERR LVK+ YAE++K Sbjct: 67 LIQPWDKSMVSEVEKAIQKADLGLSPSSDGTVIRLAIPALTEERRKELVKITKKYAEEAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRN+RRD ++LKK K G+ +ED + +D+Q +TDS IK ID K+KEIM Sbjct: 127 VAVRNVRRDANENLKKLEKDGELTEDDLRGYADDVQTLTDSYIKKIDESAAIKEKEIME 185 >gi|325971044|ref|YP_004247235.1| ribosome-recycling factor [Spirochaeta sp. Buddy] gi|324026282|gb|ADY13041.1| Ribosome-recycling factor [Spirochaeta sp. Buddy] Length = 184 Score = 171 bits (434), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 87/186 (46%), Positives = 127/186 (68%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M QV+D + +M ++ L KD LRTGR S S+LD ++V+ YGS P+NQVA V+V Sbjct: 1 MQQVLD--TCESKMLKSLESLSKDFAGLRTGRASASLLDKIRVDYYGSETPINQVATVSV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E RM+V+ WDK +++++E+ I +S+LGL P +G+++R+ P EERR LVK A Sbjct: 59 PEARMIVIQPWDKSVLSAIEKAILKSDLGLPPNNDGKLIRLNFPPLNEERRKQLVKSAKN 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE+S++++RN+RR+ MD LKK +KSG SED + E+ IQK+TDS I I+S +EK+ Sbjct: 119 TAEQSRVAMRNVRREAMDELKKLQKSGDISEDELKDAESKIQKMTDSYITQINSLSDEKE 178 Query: 181 KEIMHF 186 KEIM Sbjct: 179 KEIMEI 184 >gi|219669723|ref|YP_002460158.1| ribosome recycling factor [Desulfitobacterium hafniense DCB-2] gi|254809508|sp|B8FRG2|RRF_DESHD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|219539983|gb|ACL21722.1| ribosome recycling factor [Desulfitobacterium hafniense DCB-2] Length = 185 Score = 171 bits (434), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 83/180 (46%), Positives = 118/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ +DRM + LK++ T+R GR +P+MLD + VE YG+ P+NQ+AN++V EPRML Sbjct: 6 LKEAEDRMVKAVEALKREYATIRAGRANPNMLDKITVEYYGTQTPVNQLANISVPEPRML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK + +E+ I +S+LGLNP +G V+R+ +P+ T ERR +VK AE S+ Sbjct: 66 TIQPWDKSSLPMIEKAILKSDLGLNPSSDGTVIRLLIPQLTAERRTEIVKTVKKKAEDSR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD D LKK K ASED V ++D+QK+TD +K ID K+KEIM Sbjct: 126 VAVRNIRRDSNDELKKLEKDHTASEDEVKRAQDDVQKMTDKFVKEIDRIMGTKEKEIMEV 185 >gi|254449718|ref|ZP_05063155.1| ribosome recycling factor [Octadecabacter antarcticus 238] gi|198264124|gb|EDY88394.1| ribosome recycling factor [Octadecabacter antarcticus 238] Length = 187 Score = 171 bits (433), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 83/182 (45%), Positives = 120/182 (65%), Gaps = 1/182 (0%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 ++D ++ RM I+ L+ + +LRTGR S S+L+ + V+AYGS P+NQV V V E Sbjct: 6 ILDTDDLTRRMDGAIANLRVEFASLRTGRASASILEPIMVDAYGSQTPINQVGTVNVPES 65 Query: 64 RMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAE 123 RM+ V+VWDK +V+ VE+ I ES LG+NP + G ++ +P+PE EERR L KVA YAE Sbjct: 66 RMVTVNVWDKGLVSKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRTQLTKVAGTYAE 125 Query: 124 KSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 ++S+RN+RRDGMD +KK++ G SED E +Q++T+ IK +D E K+ EI Sbjct: 126 NGRVSIRNVRRDGMDQVKKAKNDG-MSEDDQKFWEGAVQEMTNDYIKRVDDQLEIKQAEI 184 Query: 184 MH 185 M Sbjct: 185 MQ 186 >gi|262277277|ref|ZP_06055070.1| ribosome recycling factor [alpha proteobacterium HIMB114] gi|262224380|gb|EEY74839.1| ribosome recycling factor [alpha proteobacterium HIMB114] Length = 186 Score = 171 bits (433), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 82/160 (51%), Positives = 112/160 (70%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ + +M D+I L KD+ T+RTGR SMLDLVKVE YG +P+NQVA +TV +P+ + Sbjct: 7 LKSFEKKMEDSIVSLGKDLSTVRTGRAHSSMLDLVKVEVYGQSMPINQVATITVTDPQTI 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + VWD V E+ I ES+L LNP+++GQ+LRIPVP+ E+RR L K+ + +EK K Sbjct: 67 SIQVWDANNVKFCEKAIRESDLNLNPVIDGQLLRIPVPKLNEDRRKELSKIVNQQSEKIK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITD 166 IS+RN+RR GMD LKK K+ SED L N++QKITD Sbjct: 127 ISIRNVRRTGMDFLKKEEKNKNISEDESKKLSNELQKITD 166 >gi|294677163|ref|YP_003577778.1| ribosome recycling factor [Rhodobacter capsulatus SB 1003] gi|294475983|gb|ADE85371.1| ribosome recycling factor [Rhodobacter capsulatus SB 1003] Length = 187 Score = 171 bits (432), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 84/181 (46%), Positives = 121/181 (66%), Gaps = 1/181 (0%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 ID +++ RM + LK + TLRTGR S SM++ + V+AYGS VP+NQV + V EPR Sbjct: 7 IDTDDLERRMEGAMHALKHEFGTLRTGRASASMVEPIMVDAYGSLVPINQVGTINVPEPR 66 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ V+VWDK M+ VE+ I +S LG+NP G ++ +P+PE EERR L KVA YAE Sbjct: 67 MVTVNVWDKGMINKVEKAIRDSGLGINPQTNGPIIMLPIPELNEERRRELTKVAAQYAEH 126 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++++RN+RRDGMD +KK++ +G SED E +I+++T I +D E K+ EIM Sbjct: 127 ARVAIRNVRRDGMDQIKKAKANG-MSEDDQKFWEGEIEELTKKHIGLVDKALEGKQAEIM 185 Query: 185 H 185 H Sbjct: 186 H 186 >gi|15837653|ref|NP_298341.1| ribosome recycling factor [Xylella fastidiosa 9a5c] gi|22001954|sp|Q9PEH7|RRF_XYLFA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|9105995|gb|AAF83861.1|AE003942_5 ribosome recycling factor [Xylella fastidiosa 9a5c] Length = 185 Score = 170 bits (431), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 84/184 (45%), Positives = 126/184 (68%), Gaps = 2/184 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +NQ+ Q+ +DRM +I L+ + ++RTGR SPS+LD +K++AYG+ PLNQVA+++V Sbjct: 2 LNQI--KQDAQDRMTKSIDALRNSLASVRTGRASPSLLDGIKIKAYGTDTPLNQVASISV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R LV++V+DK M VE+ I+ S+LGL P V G ++R+ +P TEERR L KV H+ Sbjct: 60 SEGRSLVITVFDKNMSKDVEKAIYASDLGLTPTVVGTLIRLNLPPLTEERRKELTKVVHS 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E +K+++RNIRRD +K KS + +ED V E DIQK+TD IK++D + K+ Sbjct: 120 EGEDTKVAIRNIRRDANQQIKDMLKSKEITEDEVRQGEEDIQKLTDKAIKSVDEVVKSKE 179 Query: 181 KEIM 184 +E+M Sbjct: 180 QELM 183 >gi|52785632|ref|YP_091461.1| ribosome recycling factor [Bacillus licheniformis ATCC 14580] gi|163119440|ref|YP_079046.2| ribosome recycling factor [Bacillus licheniformis ATCC 14580] gi|319645965|ref|ZP_08000195.1| ribosome-recycling factor [Bacillus sp. BT1B_CT2] gi|60390243|sp|Q65JJ6|RRF_BACLD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|52348134|gb|AAU40768.1| Frr [Bacillus licheniformis ATCC 14580] gi|145902947|gb|AAU23408.2| ribosome recycling factor [Bacillus licheniformis ATCC 14580] gi|317391715|gb|EFV72512.1| ribosome-recycling factor [Bacillus sp. BT1B_CT2] Length = 185 Score = 170 bits (430), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 79/180 (43%), Positives = 121/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + K+RM IS ++++ T+R GR +PS+LD V VE YG+ PLNQ+A++TV E RML Sbjct: 6 MNETKERMQKAISAYQRELATVRAGRANPSLLDKVAVEYYGAQTPLNQIASITVPEARML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V++ +DK + +E+ I +++LG+ P +G ++RI +P TEERR L K+ Y+E +K Sbjct: 66 VITPYDKTALGDIEKAIQKADLGVTPSNDGNIIRITIPPLTEERRKELAKLVKKYSEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD D LKK K+G+ +ED + S D+QK+TD + ID ++K+KEIM Sbjct: 126 VAVRNIRRDANDDLKKLEKNGEMTEDELRSSTEDVQKLTDEYVSKIDEITKDKEKEIMEV 185 >gi|89895289|ref|YP_518776.1| hypothetical protein DSY2543 [Desulfitobacterium hafniense Y51] gi|122482357|sp|Q24UG0|RRF_DESHY RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|89334737|dbj|BAE84332.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 185 Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 82/180 (45%), Positives = 118/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ +DRM + LK++ T+R GR +P+MLD + VE YG+ P+NQ+AN++V EPRML Sbjct: 6 LKEAEDRMVKAVEALKREYATIRAGRANPNMLDKITVEYYGTQTPVNQLANISVPEPRML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK + +E+ I +S+LGLNP +G V+R+ +P+ T ERR +VK AE S+ Sbjct: 66 TIQPWDKSSLPMIEKAILKSDLGLNPSSDGTVIRLLIPQLTAERRTEIVKTVKKKAEDSR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD D LKK K ASED V ++D+QK+TD +K I+ K+KEIM Sbjct: 126 VAVRNIRRDSNDELKKLEKDHTASEDEVKRAQDDVQKMTDKFVKEIERIMGTKEKEIMEV 185 >gi|28198252|ref|NP_778566.1| ribosome recycling factor [Xylella fastidiosa Temecula1] gi|32129996|sp|Q87EH6|RRF_XYLFT RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|28056322|gb|AAO28215.1| ribosome recycling factor [Xylella fastidiosa Temecula1] gi|307579357|gb|ADN63326.1| ribosome recycling factor [Xylella fastidiosa subsp. fastidiosa GB514] Length = 185 Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 84/184 (45%), Positives = 126/184 (68%), Gaps = 2/184 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +NQ+ Q+ +DRM +I L+ + ++RTGR SPS+LD +K++AYG+ PLNQVA+++V Sbjct: 2 LNQI--KQDAQDRMTKSIDALRNSLASVRTGRASPSLLDGIKIKAYGTDTPLNQVASISV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R LV++V+DK M VE+ I+ S+LGL P V G ++R+ +P TEERR L KV H+ Sbjct: 60 SEGRSLVITVFDKNMSKDVEKAIYASDLGLTPTVVGTLIRLNLPPLTEERRKELTKVVHS 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E +K+++RNIRRD +K KS + +ED V E DIQK+TD IK++D + K+ Sbjct: 120 EGEDTKVAIRNIRRDANQQIKDMLKSKEITEDEVRHGEEDIQKLTDKAIKSVDEVVKSKE 179 Query: 181 KEIM 184 +E+M Sbjct: 180 QELM 183 >gi|71275615|ref|ZP_00651900.1| Ribosome recycling factor [Xylella fastidiosa Dixon] gi|71899512|ref|ZP_00681669.1| Ribosome recycling factor [Xylella fastidiosa Ann-1] gi|170729576|ref|YP_001775009.1| ribosome recycling factor [Xylella fastidiosa M12] gi|182680889|ref|YP_001829049.1| ribosome recycling factor [Xylella fastidiosa M23] gi|71163506|gb|EAO13223.1| Ribosome recycling factor [Xylella fastidiosa Dixon] gi|71730732|gb|EAO32806.1| Ribosome recycling factor [Xylella fastidiosa Ann-1] gi|167964369|gb|ACA11379.1| ribosome recycling factor [Xylella fastidiosa M12] gi|182630999|gb|ACB91775.1| ribosome recycling factor [Xylella fastidiosa M23] Length = 190 Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 84/184 (45%), Positives = 126/184 (68%), Gaps = 2/184 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +NQ+ Q+ +DRM +I L+ + ++RTGR SPS+LD +K++AYG+ PLNQVA+++V Sbjct: 7 LNQI--KQDAQDRMTKSIDALRNSLASVRTGRASPSLLDGIKIKAYGTDTPLNQVASISV 64 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R LV++V+DK M VE+ I+ S+LGL P V G ++R+ +P TEERR L KV H+ Sbjct: 65 SEGRSLVITVFDKNMSKDVEKAIYASDLGLTPTVVGTLIRLNLPPLTEERRKELTKVVHS 124 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E +K+++RNIRRD +K KS + +ED V E DIQK+TD IK++D + K+ Sbjct: 125 EGEDTKVAIRNIRRDANQQIKDMLKSKEITEDEVRHGEEDIQKLTDKAIKSVDEVVKSKE 184 Query: 181 KEIM 184 +E+M Sbjct: 185 QELM 188 >gi|71899406|ref|ZP_00681565.1| Ribosome recycling factor [Xylella fastidiosa Ann-1] gi|71730815|gb|EAO32887.1| Ribosome recycling factor [Xylella fastidiosa Ann-1] Length = 190 Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 84/184 (45%), Positives = 126/184 (68%), Gaps = 2/184 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +NQ+ Q+ +DRM +I L+ + ++RTGR SPS+LD +K++AYG+ PLNQVA+++V Sbjct: 7 LNQI--KQDAQDRMTKSIDALRNSLASVRTGRASPSLLDGIKIKAYGTDTPLNQVASISV 64 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R LV++V+DK M VE+ I+ S+LGL P V G ++R+ +P TEERR L KV H+ Sbjct: 65 SEGRSLVITVFDKNMSKDVEKAIYASDLGLTPTVVGTLIRLNLPPLTEERRKELTKVVHS 124 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E +K+++RNIRRD +K KS + +ED V E DIQK+TD IK++D + K+ Sbjct: 125 EGEDTKVAIRNIRRDANQQIKDMLKSKEITEDEVRHGEEDIQKLTDKAIKSVDKVVKSKE 184 Query: 181 KEIM 184 +E+M Sbjct: 185 QELM 188 >gi|148261537|ref|YP_001235664.1| ribosome recycling factor [Acidiphilium cryptum JF-5] gi|326405026|ref|YP_004285108.1| ribosome-recycling factor [Acidiphilium multivorum AIU301] gi|166230404|sp|A5G1L3|RRF_ACICJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|146403218|gb|ABQ31745.1| ribosome recycling factor [Acidiphilium cryptum JF-5] gi|325051888|dbj|BAJ82226.1| ribosome-recycling factor [Acidiphilium multivorum AIU301] Length = 188 Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 83/177 (46%), Positives = 117/177 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++ RM + LK++ LRTGR +P++LD VKVEAYG+ +PLNQVA V V E RML Sbjct: 9 LADLQRRMDGAMETLKREFSGLRTGRANPALLDPVKVEAYGTLMPLNQVATVAVPESRML 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V VWD+ MV + I + LGLNP +GQ++R+P+P TEERR L + A YAE ++ Sbjct: 69 TVQVWDRGMVNATVAAIRDCGLGLNPQPDGQLIRVPLPLLTEERRNELARAAGKYAEGAR 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 ++VR +RRDGM+ +K K + ED + +QK+TD+TIK ID EK+K+I Sbjct: 129 VAVRGVRRDGMETIKGFEKKHQIGEDQGRDWADRVQKLTDATIKKIDELLVEKEKDI 185 >gi|266622994|ref|ZP_06115929.1| ribosome recycling factor [Clostridium hathewayi DSM 13479] gi|288865250|gb|EFC97548.1| ribosome recycling factor [Clostridium hathewayi DSM 13479] Length = 184 Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 82/178 (46%), Positives = 118/178 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 LQ +D+M T+ L+ D MT+R GR +P +LD +KV+ YG+ PL QV N+ V E RM+ Sbjct: 5 LQVYEDKMNKTLEVLESDYMTIRAGRANPHVLDKIKVDYYGTPTPLQQVGNINVPEARMI 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ W+K ++ ++E+ I S+LG+NP +G V+R+ PE TEERR LVK E +K Sbjct: 65 IIQPWEKSLLKAIEKAILTSDLGINPTNDGSVIRLVFPELTEERRKELVKDVKKKGEAAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++VRNIRRDG D+ KK +K+ + SED +A E DIQK+TD I ID E K KE++ Sbjct: 125 VAVRNIRRDGNDYFKKLQKADEISEDDLAEAEEDIQKLTDKMIGKIDKAIEAKSKELL 182 >gi|157828071|ref|YP_001494313.1| ribosome recycling factor [Rickettsia rickettsii str. 'Sheila Smith'] gi|165932770|ref|YP_001649559.1| ribosome recycling factor [Rickettsia rickettsii str. Iowa] gi|166231219|sp|A8GQY0|RRF_RICRS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|189044068|sp|B0BWC7|RRF_RICRO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|157800552|gb|ABV75805.1| ribosome recycling factor [Rickettsia rickettsii str. 'Sheila Smith'] gi|165907857|gb|ABY72153.1| ribosome recycling factor (RRF) [Rickettsia rickettsii str. Iowa] Length = 186 Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 84/177 (47%), Positives = 122/177 (68%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N++++M + L ++ LRT R S ++LD V VEAYGS +PL+QVA+++ + R + Sbjct: 8 KNLQEKMEKALKVLDHELKGLRTSRASVNLLDSVTVEAYGSKMPLSQVASLSTPDARTIN 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V VWDK MV+SVE+GI +NLGL P +GQ++R+P+P TEERR LVK+AH Y E +KI Sbjct: 68 VQVWDKSMVSSVEKGITIANLGLTPATDGQLIRLPIPALTEERRTELVKLAHKYGEDTKI 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 S+RNIRRDG + LKK K ++D SL +QK+TD +DS ++K++EIM Sbjct: 128 SLRNIRRDGNEVLKKLEKDNVIAKDEHHSLSEQVQKLTDDYSSKVDSVIKQKEQEIM 184 >gi|108804238|ref|YP_644175.1| ribosome recycling factor [Rubrobacter xylanophilus DSM 9941] gi|123177371|sp|Q1AW65|RRF_RUBXD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|108765481|gb|ABG04363.1| ribosome recycling factor [Rubrobacter xylanophilus DSM 9941] Length = 186 Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 76/185 (41%), Positives = 127/185 (68%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ VIDL + + RM + ++ T+RTGR +P++LD ++VEAYG+ +P+ VA++ Sbjct: 1 MSDVIDLSDAERRMKGALEAVRHQFATIRTGRANPALLDRIEVEAYGTRMPIKSVASIGA 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPR+L ++ +D ++ ++ER I +S+LGLNP +G+++R+P+PE TEERR L+++ Sbjct: 61 PEPRLLTITPYDPNLLKTIERAIRDSDLGLNPQNDGKIIRLPIPELTEERRRELIRLVRH 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE+ ++SVRN+RRD M +++ R+ G+ SED E ++QK+TD+ IK ID EK+ Sbjct: 121 MAEEGRVSVRNVRRDEMHDIQRLRREGEISEDDERRAEAELQKLTDAYIKRIDEALAEKE 180 Query: 181 KEIMH 185 E+M Sbjct: 181 AELME 185 >gi|16078715|ref|NP_389534.1| ribosome recycling factor [Bacillus subtilis subsp. subtilis str. 168] gi|221309530|ref|ZP_03591377.1| ribosome recycling factor [Bacillus subtilis subsp. subtilis str. 168] gi|221313854|ref|ZP_03595659.1| ribosome recycling factor [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318777|ref|ZP_03600071.1| ribosome recycling factor [Bacillus subtilis subsp. subtilis str. JH642] gi|221323049|ref|ZP_03604343.1| ribosome recycling factor [Bacillus subtilis subsp. subtilis str. SMY] gi|321315419|ref|YP_004207706.1| ribosome recycling factor [Bacillus subtilis BSn5] gi|3122762|sp|P81101|RRF_BACSU RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor; AltName: Full=Vegetative protein 12B; Short=VEG12B gi|2634024|emb|CAB13525.1| ribosome recycling factor [Bacillus subtilis subsp. subtilis str. 168] gi|291484207|dbj|BAI85282.1| ribosome recycling factor [Bacillus subtilis subsp. natto BEST195] gi|320021693|gb|ADV96679.1| ribosome recycling factor [Bacillus subtilis BSn5] Length = 185 Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 79/180 (43%), Positives = 122/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K++M I+ ++++ T+R GR +PS+LD V VE YG+ PLNQ++++ V E RML Sbjct: 6 LTQTKEKMEKAIAAYQRELATVRAGRANPSLLDKVTVEYYGAQTPLNQLSSINVPEARML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V++ +DK + +E+ I +++LGL P +G ++RI +P TEERR LVKV YAE++K Sbjct: 66 VITPYDKTAIGDIEKAILKADLGLTPTSDGNMIRIAIPALTEERRKELVKVVKKYAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RRD D LKK K+G +ED + + D+QK+TD + IDS ++K+KEIM Sbjct: 126 VAVRNVRRDANDDLKKLEKNGDITEDELRASTEDVQKLTDEYVSKIDSVTKDKEKEIMEV 185 >gi|91205947|ref|YP_538302.1| ribosome recycling factor [Rickettsia bellii RML369-C] gi|157826692|ref|YP_001495756.1| ribosome recycling factor [Rickettsia bellii OSU 85-389] gi|122425318|sp|Q1RHF1|RRF_RICBR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166231217|sp|A8GV48|RRF_RICB8 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|91069491|gb|ABE05213.1| Ribosome recycling factor [Rickettsia bellii RML369-C] gi|157801996|gb|ABV78719.1| ribosome recycling factor [Rickettsia bellii OSU 85-389] Length = 186 Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 85/184 (46%), Positives = 124/184 (67%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M++V +N++++M + L ++ LRTGR S ++LD V VEAYG +PL+QVA++T Sbjct: 1 MDKVTLKKNLQEKMDKALKVLDHELKGLRTGRASVNLLDSVTVEAYGDRMPLSQVASLTT 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R + V VWDK MV+SVE+ I +NLGL P +GQ++R+P+P TEERR L K+AH Sbjct: 61 PDARTINVQVWDKSMVSSVEKAITVANLGLTPSSDGQLIRLPIPALTEERRKELAKLAHK 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 Y E +KIS+RNIRRDG + LKK K ++D SL +QK+TD +DS ++K+ Sbjct: 121 YGEDTKISLRNIRRDGNEELKKMEKDNIIAKDEHHSLAEQVQKLTDEYSSKVDSAIKQKE 180 Query: 181 KEIM 184 +EIM Sbjct: 181 QEIM 184 >gi|294666399|ref|ZP_06731645.1| ribosome releasing factor [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603841|gb|EFF47246.1| ribosome releasing factor [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 185 Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 83/177 (46%), Positives = 119/177 (67%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ + RM +I L+ + T+RTGR SP++LD +KV+AYG+ PLNQVA+++V E R LV Sbjct: 7 QDAQTRMTKSIDALRHSLTTIRTGRASPALLDGIKVKAYGADTPLNQVASISVSEGRSLV 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S++DK M+ VE+ I+ S+LGL P V G V+R+ +P TEERR L K H E SK+ Sbjct: 67 ISLFDKGMIKDVEKAIYASDLGLTPTVVGTVIRLNLPPLTEERRKELSKSVHGEGEDSKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++RNIRRD +K K +ED S E+DIQK+TD IKN+D + K++E+M Sbjct: 127 AIRNIRRDANQQVKDLLKDKAVTEDEARSAEDDIQKLTDKAIKNVDEVVKGKEQELM 183 >gi|313891920|ref|ZP_07825521.1| ribosome recycling factor [Dialister microaerophilus UPII 345-E] gi|329120951|ref|ZP_08249582.1| ribosome recycling factor [Dialister micraerophilus DSM 19965] gi|313119563|gb|EFR42754.1| ribosome recycling factor [Dialister microaerophilus UPII 345-E] gi|327471113|gb|EGF16567.1| ribosome recycling factor [Dialister micraerophilus DSM 19965] Length = 185 Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 79/179 (44%), Positives = 127/179 (70%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + +++RM +I LK + ++RTG+ SPS+LD + V+ YG+ P++QV +++V E RML Sbjct: 6 INELRERMDKSIQALKTEFSSIRTGQASPSLLDRIFVDYYGTQTPISQVGSISVPEARML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV WDK ++ +E+ I +S+LGL P+ +G ++R+ +P+ TEERR LVK+A+ AE++K Sbjct: 66 VVQPWDKSVLKEIEKAILQSDLGLVPMNDGNLIRMAIPQLTEERRKDLVKIANKKAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +++RNIRRDG LKK K G S+D+++ E+++Q +TD IK ID+ E+K KEIM Sbjct: 126 VAIRNIRRDGNTFLKKEEKKGDISKDIISEAEDEVQDLTDIKIKEIDAVTEKKIKEIMS 184 >gi|303228555|ref|ZP_07315383.1| ribosome recycling factor [Veillonella atypica ACS-134-V-Col7a] gi|303232131|ref|ZP_07318834.1| ribosome recycling factor [Veillonella atypica ACS-049-V-Sch6] gi|302513237|gb|EFL55276.1| ribosome recycling factor [Veillonella atypica ACS-049-V-Sch6] gi|302516802|gb|EFL58716.1| ribosome recycling factor [Veillonella atypica ACS-134-V-Col7a] Length = 186 Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 81/180 (45%), Positives = 121/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q ++RM +I LK + ++RTGR S ++LD V V+ YGS P+NQVAN++V EPRM+ Sbjct: 7 MQQQEERMNKSIESLKHEFASIRTGRASTALLDKVMVDYYGSPTPINQVANISVPEPRMI 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ WDK M+ ++E+ I +S+LGLNP +G +R+ +P+ TEERR +VKV H AE +K Sbjct: 67 LIAPWDKSMIGAIEKAILQSDLGLNPGNDGTAIRLTIPQLTEERRKEIVKVVHKKAEDAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD D LKK K+ +ED + IQK+TD IK ID K+K+++ Sbjct: 127 VAVRNIRRDANDALKKEEKAKTITEDDAKDGLDQIQKLTDKKIKQIDELKAVKEKDVLEV 186 >gi|149915215|ref|ZP_01903743.1| ribosome recycling factor [Roseobacter sp. AzwK-3b] gi|149810936|gb|EDM70775.1| ribosome recycling factor [Roseobacter sp. AzwK-3b] Length = 189 Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 81/181 (44%), Positives = 118/181 (65%), Gaps = 1/181 (0%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 +D +++ RM + LK + +LRTGR S S+L+ V V+AYG P+NQV V V E R Sbjct: 9 LDTGDLQRRMEGAMGALKTEFASLRTGRASASILEPVMVDAYGQRTPINQVGTVNVPESR 68 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ ++VWDK +V VE+ I ES LG+NP + G ++ +P+PE EERR L KVA YAE Sbjct: 69 MVTINVWDKGLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRKELTKVAAQYAEH 128 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++++VRN+RRDGMD +KK++ G SED E+++Q +T+ I +D E K+ EIM Sbjct: 129 ARVAVRNVRRDGMDQIKKAKADG-MSEDDQKFWESEVQDLTNKFIAQVDEALETKQAEIM 187 Query: 185 H 185 Sbjct: 188 Q 188 >gi|296330867|ref|ZP_06873342.1| ribosome recycling factor [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674385|ref|YP_003866057.1| ribosome recycling factor [Bacillus subtilis subsp. spizizenii str. W23] gi|296151872|gb|EFG92746.1| ribosome recycling factor [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412629|gb|ADM37748.1| ribosome recycling factor [Bacillus subtilis subsp. spizizenii str. W23] Length = 185 Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 79/180 (43%), Positives = 121/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K++M I+ ++++ T+R GR +PS+LD V VE YG+ PLNQ++++ V E RML Sbjct: 6 LTQTKEKMEKAIAAYQRELATVRAGRANPSLLDKVTVEYYGAQTPLNQLSSINVPEARML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV+ +DK + +E+ I +++LG+ P +G ++RI +P TEERR LVKV YAE +K Sbjct: 66 VVTPYDKSAIGDIEKAILKADLGITPTSDGNMIRIAIPALTEERRKELVKVVKKYAEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RRD D LKK K+G +ED + + D+QK+TD + IDS ++K+KEIM Sbjct: 126 VAVRNVRRDANDDLKKLEKNGDITEDELRASTEDVQKLTDEYVSKIDSVTKDKEKEIMEV 185 >gi|296132870|ref|YP_003640117.1| ribosome recycling factor [Thermincola sp. JR] gi|296031448|gb|ADG82216.1| ribosome recycling factor [Thermincola potens JR] Length = 185 Score = 168 bits (425), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 78/175 (44%), Positives = 118/175 (67%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 +DRM + L+KD+ TLRTGR +P++L+ ++V+ YG P+NQ+A V+ EPR+LV+ Sbjct: 10 EDRMRKAVEALRKDLATLRTGRATPALLEKIQVDYYGVPTPINQMAKVSAPEPRLLVIQP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 WDK ++ +E+ I +S+LGL P +G V+R+ +P+ T+ERR LVK+ AE ++++R Sbjct: 70 WDKSVLGEIEKAIMKSDLGLTPNNDGTVIRLNIPQLTQERRAELVKICKKKAEDGRVAIR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 NIRRD D LK+ KSG SED + +IQK+TD IK +D E K++EIM Sbjct: 130 NIRRDANDQLKEFEKSGDISEDDNRRGQEEIQKLTDKYIKEVDQLLEHKEQEIME 184 >gi|311068174|ref|YP_003973097.1| ribosome recycling factor [Bacillus atrophaeus 1942] gi|310868691|gb|ADP32166.1| ribosome recycling factor [Bacillus atrophaeus 1942] Length = 185 Score = 168 bits (425), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 77/180 (42%), Positives = 122/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K+RM ++ ++++ T+R GR +PS+LD V VE YG+ PLNQ++++ V E RML Sbjct: 6 LTETKERMEKAVAAYQRELATVRAGRANPSLLDKVTVEYYGAQTPLNQLSSINVPEARML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V++ +DK + +E+ I +++LG+ P +G ++RI +P TEERR LVK+ YAE++K Sbjct: 66 VITPYDKTAIGDIEKAILKADLGVTPTSDGNIIRIAIPALTEERRKELVKLVKKYAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RRD D LKK K+G +ED + + D+QK+TD + IDS ++K+KEIM Sbjct: 126 VAVRNVRRDANDDLKKLEKNGDITEDELRTSNEDVQKLTDEYVSKIDSVTKDKEKEIMEV 185 >gi|238019366|ref|ZP_04599792.1| hypothetical protein VEIDISOL_01230 [Veillonella dispar ATCC 17748] gi|237864065|gb|EEP65355.1| hypothetical protein VEIDISOL_01230 [Veillonella dispar ATCC 17748] Length = 186 Score = 168 bits (425), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 83/180 (46%), Positives = 122/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 LQ ++RM +I LK + ++RTGR S ++LD V V+ YGS P+NQVAN++V EPRM+ Sbjct: 7 LQQAEERMNKSIEALKHEFASIRTGRASVALLDKVMVDYYGSPSPINQVANISVPEPRMI 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V++ WDK M+ ++E+ I +S+LGLNP +G +R+ +P+ TEERR +VKV H AE +K Sbjct: 67 VIAPWDKTMIGAIEKAILQSDLGLNPGNDGAQIRLTIPQLTEERRKEIVKVVHKKAEDAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD D LKK K+ +ED + IQK+TD+ IK ID K+K+++ Sbjct: 127 VAVRNIRRDVNDALKKEEKAKTITEDDAKDGLDQIQKLTDAKIKQIDELKAVKEKDVLEV 186 >gi|157692331|ref|YP_001486793.1| ribosome recycling factor [Bacillus pumilus SAFR-032] gi|166991553|sp|A8FDB6|RRF_BACP2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|157681089|gb|ABV62233.1| peptide chain release factor RF4 [Bacillus pumilus SAFR-032] Length = 185 Score = 168 bits (425), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 77/180 (42%), Positives = 120/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K++M + +++ T+R GR + S+LD V V+ YG+ PLNQ+A++TV E RML Sbjct: 6 LNQTKEKMEKAVQAYGRELATVRAGRANASLLDKVTVDYYGAQTPLNQIASITVPEARML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK + +E+ I +S+LG+ P +G V+RI +P TEERR LVKV Y+E++K Sbjct: 66 IITPYDKTAIGDIEKSIQKSDLGITPTSDGNVIRIAIPALTEERRKELVKVVRKYSEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RRD D LKK K+G+ +ED + S D+QK+TD + ID ++K+KEIM Sbjct: 126 VAVRNVRRDANDELKKLEKNGEITEDELRSSTEDVQKLTDEYVAKIDDVMKDKEKEIMEV 185 >gi|328553453|gb|AEB23945.1| ribosome recycling factor [Bacillus amyloliquefaciens TA208] Length = 185 Score = 168 bits (425), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 78/179 (43%), Positives = 121/179 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K+RM ++ +++ ++R GR +PS+LD V VE YG+ PLNQ++++ V E RML Sbjct: 6 LTQTKERMEKAVAAYSRELASVRAGRANPSLLDKVTVEYYGAQTPLNQLSSINVSEARML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV+ +DK + +E+ I +++LG+ P +G ++RI +P TEERR LVKV YAE++K Sbjct: 66 VVTPYDKTAIGDIEKAILKADLGVTPTSDGTIIRIAIPALTEERRKELVKVVKKYAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRN+RRD D LKK K+G +ED + + D+QK+TD + IDS ++K+KEIM Sbjct: 126 VAVRNVRRDSNDELKKLEKNGDITEDELRASSEDVQKLTDEFVSKIDSVTKDKEKEIME 184 >gi|330445148|ref|ZP_08308800.1| ribosome recycling factor [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489339|dbj|GAA03297.1| ribosome recycling factor [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 185 Score = 168 bits (425), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 82/179 (45%), Positives = 120/179 (67%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ + RM ++ LK ++ +RTGR PS+LD + VE YG++ PLNQVANV + R L Sbjct: 7 QDAQSRMEKSVEALKNQLVKIRTGRAHPSLLDTISVEYYGANTPLNQVANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+E+ VE+ I S+LGLNP+ G V+R+P+P TEERR LVK+ A AE+ ++ Sbjct: 67 ITVFDRELAPKVEKAIMMSDLGLNPMSAGTVIRVPLPPLTEERRRDLVKIVRAEAEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD ++K K + SED +++IQK+TD IKNID+ E K+KE+M Sbjct: 127 AVRNIRRDANANVKALLKDKEISEDDDRRAQDEIQKLTDDAIKNIDAVLEVKEKELMEV 185 >gi|15604030|ref|NP_220545.1| ribosome recycling factor [Rickettsia prowazekii str. Madrid E] gi|6226047|sp|Q9ZE08|RRF_RICPR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|3860721|emb|CAA14622.1| RIBOSOME RECYCLING FACTOR (rrf) [Rickettsia prowazekii] gi|292571749|gb|ADE29664.1| Ribosome recycling factor [Rickettsia prowazekii Rp22] Length = 186 Score = 168 bits (425), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 84/175 (48%), Positives = 120/175 (68%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 ++++M I L ++ LRTGR S + LD V VEAYGS +PL+QVA+++ + R + V Sbjct: 10 LQEKMEKAIKVLGNELKGLRTGRASINFLDSVTVEAYGSKIPLSQVASLSTPDARTINVQ 69 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 VWDK MV+SVE+GI +NLGL +GQ++R+P+P TEERR LVK+AH Y E++KIS+ Sbjct: 70 VWDKSMVSSVEKGITIANLGLTHATDGQLIRLPIPSLTEERRKELVKLAHKYGEETKISL 129 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RNIRRDG++ LKK K +D +L IQK+TD +DS ++K++EIM Sbjct: 130 RNIRRDGIEELKKLEKDNIIVKDEYHNLSEQIQKLTDEYSSKVDSAIKQKEQEIM 184 >gi|313893396|ref|ZP_07826968.1| ribosome recycling factor [Veillonella sp. oral taxon 158 str. F0412] gi|313442037|gb|EFR60457.1| ribosome recycling factor [Veillonella sp. oral taxon 158 str. F0412] Length = 186 Score = 167 bits (424), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 82/180 (45%), Positives = 124/180 (68%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 LQ ++RM +I LK + ++RTGR S ++LD V V+ YGS P+NQVAN++V EPRM+ Sbjct: 7 LQQAEERMNKSIEALKHEFASIRTGRASVALLDKVMVDYYGSPSPINQVANISVPEPRMI 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V++ WDK M+ ++E+ I +S+LGLNP +G +R+ +P+ TEERR +VKV H AE +K Sbjct: 67 VIAPWDKTMIGAIEKAILQSDLGLNPGNDGAQIRLTIPQLTEERRKEIVKVVHKKAEDAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD D LKK K+ +ED ++IQK+TD+ +K+ID K+K+++ Sbjct: 127 VAVRNIRRDVNDALKKEEKAKTITEDDAKDGLDEIQKLTDAKVKHIDELKAVKEKDVLEV 186 >gi|114566420|ref|YP_753574.1| ribosome recycling factor [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122318505|sp|Q0AYK1|RRF_SYNWW RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|114337355|gb|ABI68203.1| ribosome recycling factor [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 185 Score = 167 bits (424), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 85/180 (47%), Positives = 122/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + ++RM TI L+KD+ +LR GR +P+ML+ + V+ YG P+NQ+AN+TV E R+L Sbjct: 6 LSDTEERMKKTIEHLRKDLASLRAGRANPAMLEKIMVDYYGQPTPINQLANITVPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK ++AS+E+ I +S+LG+NP +G V+R+ +P+ TEERR LVKV AE+++ Sbjct: 66 VIQPWDKTIIASIEKAIMKSDLGINPSNDGNVIRLVIPQLTEERRKELVKVLRKRAEEAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD + LK K SED +DIQK TD IK IDS + K+KEIM Sbjct: 126 VAVRNIRRDSNELLKSGEKEKLISEDDNKKGMDDIQKETDRHIKEIDSILQGKEKEIMEV 185 >gi|154686069|ref|YP_001421230.1| ribosome recycling factor [Bacillus amyloliquefaciens FZB42] gi|166230410|sp|A7Z4S3|RRF_BACA2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|154351920|gb|ABS73999.1| Frr [Bacillus amyloliquefaciens FZB42] Length = 185 Score = 167 bits (424), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 78/180 (43%), Positives = 121/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K+RM ++ +++ ++R GR +PS+LD V VE YG+ PLNQ++++ V E RML Sbjct: 6 LTQTKERMEKAVAAYSRELASVRAGRANPSLLDKVTVEYYGAQTPLNQLSSINVPEARML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV+ +DK + +E+ I +++LG+ P +G ++RI +P TEERR LVKV YAE++K Sbjct: 66 VVTPYDKTAIGDIEKAILKADLGVTPTSDGTIIRIAIPALTEERRKELVKVVKKYAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RRD D LKK K+G +ED + + D+QK+TD + IDS ++K+KEIM Sbjct: 126 VAVRNVRRDSNDDLKKLEKNGDITEDELRASSEDVQKLTDEYVSKIDSVTKDKEKEIMEV 185 >gi|308173615|ref|YP_003920320.1| ribosome recycling factor [Bacillus amyloliquefaciens DSM 7] gi|307606479|emb|CBI42850.1| ribosome recycling factor [Bacillus amyloliquefaciens DSM 7] gi|328911756|gb|AEB63352.1| ribosome recycling factor [Bacillus amyloliquefaciens LL3] Length = 185 Score = 167 bits (424), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 78/179 (43%), Positives = 121/179 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K+RM ++ +++ ++R GR +PS+LD V VE YG+ PLNQ++++ V E RML Sbjct: 6 LTQTKERMEKAVAAYSRELASVRAGRANPSLLDKVTVEYYGAQTPLNQLSSINVPEARML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV+ +DK + +E+ I +++LG+ P +G ++RI +P TEERR LVKV YAE++K Sbjct: 66 VVTPYDKTAIGDIEKAILKADLGVTPTSDGTIIRIAIPALTEERRKELVKVVKKYAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRN+RRD D LKK K+G +ED + + D+QK+TD + IDS ++K+KEIM Sbjct: 126 VAVRNVRRDSNDELKKLEKNGDITEDELRASSEDVQKLTDEFVSKIDSVTKDKEKEIME 184 >gi|157803342|ref|YP_001491891.1| ribosome recycling factor [Rickettsia canadensis str. McKiel] gi|166231218|sp|A8EXM3|RRF_RICCK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|157784605|gb|ABV73106.1| ribosome recycling factor [Rickettsia canadensis str. McKiel] Length = 186 Score = 167 bits (424), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 83/177 (46%), Positives = 123/177 (69%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N++++M + L ++ LRTGR S ++LD V VEAYGS +PL+QVA+++ + R + Sbjct: 8 KNLQEKMEKALKVLDHELKGLRTGRASVNLLDSVIVEAYGSKIPLSQVASISTPDARTIN 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V VWDK MV+ VE+GI +NLGL P +GQ++R+P+P TEERR LVK+AH Y E +KI Sbjct: 68 VQVWDKSMVSLVEKGITIANLGLTPATDGQLIRLPIPILTEERRKELVKLAHKYGEDTKI 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 S+RNIRRDG + LKK K+ ++D SL +QK+T+ +DS ++K++EIM Sbjct: 128 SLRNIRRDGNEELKKLEKNNILTKDEHHSLSEQVQKLTNDYSNKVDSAIKQKEQEIM 184 >gi|194015089|ref|ZP_03053706.1| ribosome recycling factor [Bacillus pumilus ATCC 7061] gi|194014115|gb|EDW23680.1| ribosome recycling factor [Bacillus pumilus ATCC 7061] Length = 185 Score = 167 bits (424), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 77/180 (42%), Positives = 120/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K++M + +++ T+R GR + S+LD V V+ YG+ PLNQ+A++TV E RML Sbjct: 6 LNQTKEKMEKAVQAYGRELATVRAGRANASLLDKVTVDYYGAQTPLNQIASITVPEARML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK + +E+ I +S+LG+ P +G V+RI +P TEERR LVKV Y+E++K Sbjct: 66 IITPYDKTAIGDIEKSIQKSDLGITPTSDGNVIRIAIPALTEERRKELVKVVRKYSEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RRD D LKK K+G+ +ED + S D+QK+TD + ID ++K+KEIM Sbjct: 126 VAVRNVRRDANDELKKLEKNGEITEDELRSSTEDVQKLTDEYVAKIDDVTKDKEKEIMEV 185 >gi|297617174|ref|YP_003702333.1| ribosome recycling factor [Syntrophothermus lipocalidus DSM 12680] gi|297145011|gb|ADI01768.1| ribosome recycling factor [Syntrophothermus lipocalidus DSM 12680] Length = 188 Score = 167 bits (423), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 79/180 (43%), Positives = 121/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +++++ RM T+ L KD+ +LR GR +P+MLD + VE YG P+NQ+ N+ V EPRML Sbjct: 9 VKDVESRMKKTVEHLVKDLASLRAGRANPAMLDKITVEYYGQPTPINQLGNIGVPEPRML 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK + +E+ I +S+LG+NP +G V+RI +P TEERR +VK+ AE++K Sbjct: 69 VIQPWDKTAIPEIEKAILKSDLGVNPTNDGNVIRIAIPPLTEERRKEMVKMVRKRAEEAK 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RR+ D +K + K SED ++IQK+TD+TIK+ID + K+K+IM Sbjct: 129 VAVRNLRREANDEIKLAEKEKLISEDEAKKRLDEIQKLTDNTIKDIDKVLQTKEKDIMEV 188 >gi|294140006|ref|YP_003555984.1| ribosome recycling factor [Shewanella violacea DSS12] gi|293326475|dbj|BAJ01206.1| ribosome recycling factor [Shewanella violacea DSS12] Length = 185 Score = 167 bits (423), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 85/173 (49%), Positives = 109/173 (63%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM I K M +RTGR PS+LD +KV YGS PL QV NVT+ + R L VSV+D Sbjct: 12 RMAKCIEATKTQMAKVRTGRAHPSLLDSIKVSYYGSMTPLKQVGNVTIEDSRTLAVSVFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 M+ +VE+ I S+LGLNP+ G V+RIP+P TEERR L+KV A AE S+ISVRN+ Sbjct: 72 ATMIQAVEKAIMSSDLGLNPMSAGAVIRIPLPSLTEERRKDLIKVVRAEAENSRISVRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 RRD +K K + +ED V E++IQK TD+ IK ID K+ E+M Sbjct: 132 RRDANSEIKALEKEKECTEDDVHRTEDEIQKFTDAHIKQIDELLSAKEAELME 184 >gi|282850149|ref|ZP_06259528.1| ribosome recycling factor [Veillonella parvula ATCC 17745] gi|294791801|ref|ZP_06756949.1| ribosome recycling factor [Veillonella sp. 6_1_27] gi|282579642|gb|EFB85046.1| ribosome recycling factor [Veillonella parvula ATCC 17745] gi|294457031|gb|EFG25393.1| ribosome recycling factor [Veillonella sp. 6_1_27] Length = 186 Score = 167 bits (423), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 82/180 (45%), Positives = 122/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 LQ +DRM +I LK + ++RTGR S ++LD V V+ YGS P+NQVAN++V EPRM+ Sbjct: 7 LQQAEDRMNKSIEALKHEFASIRTGRASVALLDKVMVDYYGSPSPINQVANISVPEPRMI 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V++ WDK M+ ++E+ I +S+LGLNP +G +R+ +P+ TEERR +VKV H AE +K Sbjct: 67 VIAPWDKTMIGAIEKAILQSDLGLNPGNDGAQIRLSIPQLTEERRKEIVKVVHKKAEDAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD + LKK K+ +ED + IQK+TD+ +K ID K+K+++ Sbjct: 127 VAVRNIRRDVNEALKKEEKAKTITEDDAKDGLDQIQKLTDAKVKQIDELKAVKEKDVLEV 186 >gi|254519196|ref|ZP_05131252.1| ribosome recycling factor [Clostridium sp. 7_2_43FAA] gi|226912945|gb|EEH98146.1| ribosome recycling factor [Clostridium sp. 7_2_43FAA] Length = 185 Score = 167 bits (423), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 80/180 (44%), Positives = 123/180 (68%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q +++M TIS LK D+ T+R GR +P+MLD ++V+ YGS PLNQVAN++ EPR+L Sbjct: 6 IQKAEEKMKKTISVLKSDLSTMRAGRANPTMLDRIQVDYYGSPCPLNQVANISAPEPRVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+S W+K ++ +E+ I S+LG+NP +G V+R+ VPE TEE R LVK E++K Sbjct: 66 VISPWEKSLMKEIEKAILTSDLGINPSNDGSVIRLVVPELTEETRRNLVKNVKKTGEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++R+IRR+ D +K +K G+ +ED + + E +QKI DS +K +D+ K+KEIM Sbjct: 126 VALRSIRREANDKIKALKKDGEITEDELKNSEEKVQKIIDSFVKEVDTIIVAKEKEIMSI 185 >gi|121533727|ref|ZP_01665554.1| ribosome recycling factor [Thermosinus carboxydivorans Nor1] gi|121307718|gb|EAX48633.1| ribosome recycling factor [Thermosinus carboxydivorans Nor1] Length = 186 Score = 167 bits (423), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 76/174 (43%), Positives = 118/174 (67%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 ++M + L+K+ +LR GR +PS+LD V V+ YG P+NQVAN++V EPR++V+ W Sbjct: 12 EKMKKALEVLRKEFASLRAGRATPSLLDKVTVDYYGMPSPINQVANISVPEPRLIVIQPW 71 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 +K M+A +E+ I +S+LGL P +G V+R+ +P+ T++RR LVKV H AE++++++RN Sbjct: 72 EKSMLAPIEKAILKSDLGLTPTNDGNVIRLSIPQLTQQRRSELVKVVHKKAEEARVAIRN 131 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +RRD D +KK K + SED + D+QK+TD IK +D K+KEIM Sbjct: 132 LRRDANDAIKKLEKEKQVSEDEAKKAQEDMQKLTDKYIKEVDQVMAAKEKEIME 185 >gi|325474924|gb|EGC78110.1| ribosome-recycling factor [Treponema denticola F0402] Length = 185 Score = 167 bits (422), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 77/178 (43%), Positives = 120/178 (67%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N +++M T++ LK++ LRTGR S ++ D ++V YG PLNQ+AN+++ E R++V Sbjct: 7 KNCEEKMKKTVAALKEEFNMLRTGRASSALFDKIRVNCYGESTPLNQLANISIPEARLVV 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + WDK ++ +E+ + +++L +NP +G+V+RI +P TE+RR L K A AE S++ Sbjct: 67 IQPWDKGLLVEIEKAVLQADLSVNPTNDGKVIRIAIPPLTEDRRKDLAKKAKTIAENSRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 SVRNIRRDG+D KK +K GK SED + + E+ QK TD+ I I+ E K+KEIM Sbjct: 127 SVRNIRRDGIDEAKKLQKDGKISEDQLKTAEDAFQKSTDAYIAEINKVLEAKEKEIME 184 >gi|330836659|ref|YP_004411300.1| ribosome recycling factor [Spirochaeta coccoides DSM 17374] gi|329748562|gb|AEC01918.1| ribosome recycling factor [Spirochaeta coccoides DSM 17374] Length = 188 Score = 167 bits (422), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 81/180 (45%), Positives = 120/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +D+M +++ L LRTGR + ++ D +KV+ YG PLNQVA++++ E RM+ Sbjct: 9 LSQCEDKMNKSVNTLSASFQGLRTGRATAAIFDKIKVDYYGQETPLNQVASISIPEARMV 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK ++ +E+ I +S LGLNP +G++LRI P TE+RR LVK + A AE+S+ Sbjct: 69 VIQPWDKGLLGPIEKAIQKSELGLNPNNDGKLLRINFPPLTEDRRKDLVKSSKATAEQSR 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD M+ LKK +KSG SED E+ IQK+TDS I ++S +K+KEIM Sbjct: 129 VAIRNIRRDAMEDLKKLQKSGAISEDEQKDGESRIQKLTDSFITKVNSLATDKEKEIMEI 188 >gi|21242171|ref|NP_641753.1| ribosome recycling factor [Xanthomonas axonopodis pv. citri str. 306] gi|78047031|ref|YP_363206.1| ribosome recycling factor [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325929597|ref|ZP_08190711.1| ribosome recycling factor [Xanthomonas perforans 91-118] gi|24418656|sp|Q8PMK8|RRF_XANAC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|123585494|sp|Q3BVK7|RRF_XANC5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|21107587|gb|AAM36289.1| ribosome recycling factor [Xanthomonas axonopodis pv. citri str. 306] gi|78035461|emb|CAJ23106.1| ribosome recycling factor [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325540107|gb|EGD11735.1| ribosome recycling factor [Xanthomonas perforans 91-118] Length = 185 Score = 167 bits (422), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 82/177 (46%), Positives = 119/177 (67%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ + RM +I L+ + T+RTGR SP++LD +KV+AYG+ PLNQVA+++V E R LV Sbjct: 7 QDAQTRMTKSIDALRHSLTTIRTGRASPALLDGIKVKAYGADTPLNQVASISVSEGRSLV 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S++DK M+ VE+ I+ S+LGL P V G V+R+ +P TEERR L K H E SK+ Sbjct: 67 ISLFDKGMIKDVEKAIYASDLGLTPTVVGTVIRLNLPPLTEERRKELSKSVHGEGEDSKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++RNIRRD +K K +ED S E+DIQK+TD IK++D + K++E+M Sbjct: 127 AIRNIRRDANQQVKDLLKDKAVTEDEARSAEDDIQKLTDKAIKDVDEVVKGKEQELM 183 >gi|304316875|ref|YP_003852020.1| ribosome recycling factor [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778377|gb|ADL68936.1| ribosome recycling factor [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 184 Score = 167 bits (422), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 72/180 (40%), Positives = 124/180 (68%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+N +++M +I+ LK ++M++R GR +P++LD + ++ YG+ P+N++A +T EP+++ Sbjct: 5 LKNTEEKMKKSIAVLKNELMSIRAGRANPALLDRISIDYYGTMTPINKLATITAPEPKVI 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WD ++ +E+ I +S+L +NP +G+++R+ P+ TEERR LVK+ H E+++ Sbjct: 65 IIQPWDTSKISEIEKAIQKSDLNINPTSDGKIIRLVFPDLTEERRKELVKLVHKKGEEAR 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VR IRRD D +KK K+G+ SED E +QK+TD IK ID E+K+KEIM F Sbjct: 125 VAVRQIRRDANDIIKKMDKNGEISEDEKLKSEESVQKLTDKYIKEIDKILEQKEKEIMEF 184 >gi|325913951|ref|ZP_08176307.1| ribosome recycling factor [Xanthomonas vesicatoria ATCC 35937] gi|325539720|gb|EGD11360.1| ribosome recycling factor [Xanthomonas vesicatoria ATCC 35937] Length = 185 Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 83/184 (45%), Positives = 123/184 (66%), Gaps = 2/184 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +NQ+ Q+ + RM +I L+ + T+RTGR SP++LD +KV+AYG+ PLNQVA+++V Sbjct: 2 LNQI--KQDAQTRMTKSIDALRHSLTTVRTGRASPALLDGIKVKAYGTDTPLNQVASISV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R LV+S++DK M+ VE+ ++ S+LGL P V G V+R+ +P TEERR L K H Sbjct: 60 SEGRSLVISLFDKGMIKDVEKALYASDLGLTPTVVGTVIRLNLPPLTEERRKELSKSVHG 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E SK+++RNIRRD +K K K +ED E+DIQK+TD IK++D + K+ Sbjct: 120 EGEDSKVAIRNIRRDANQQVKDLLKDKKVTEDEARGAEDDIQKLTDKAIKDVDEVVKGKE 179 Query: 181 KEIM 184 +E+M Sbjct: 180 QELM 183 >gi|182417573|ref|ZP_02948898.1| ribosome recycling factor [Clostridium butyricum 5521] gi|237668448|ref|ZP_04528432.1| ribosome recycling factor [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378586|gb|EDT76114.1| ribosome recycling factor [Clostridium butyricum 5521] gi|237656796|gb|EEP54352.1| ribosome recycling factor [Clostridium butyricum E4 str. BoNT E BL5262] Length = 185 Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 78/180 (43%), Positives = 123/180 (68%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++N +++M TIS L+ D+ T++ GR +P+MLD ++VE YGS PL+QVAN++ EPR+L Sbjct: 6 IKNAEEKMKKTISVLESDLSTMKAGRANPTMLDRIQVEYYGSMCPLSQVANISAPEPRVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ W+K M+ +ER I +S+LGLNP +G V+R+ VPE T E R LVK E++K Sbjct: 66 MITPWEKPMLKDIERAILKSDLGLNPSNDGSVIRLVVPELTAETRKTLVKNVKKTGEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VR+IR+ D +K +K G SED + E+D+QK TD+ +K ID+ K+KE++ Sbjct: 126 VAVRSIRKAANDKIKTLKKDGDISEDQIKKGEDDVQKKTDAVVKQIDAIIAAKEKEVLSV 185 >gi|269797920|ref|YP_003311820.1| ribosome recycling factor [Veillonella parvula DSM 2008] gi|294793662|ref|ZP_06758799.1| ribosome recycling factor [Veillonella sp. 3_1_44] gi|269094549|gb|ACZ24540.1| ribosome recycling factor [Veillonella parvula DSM 2008] gi|294455232|gb|EFG23604.1| ribosome recycling factor [Veillonella sp. 3_1_44] Length = 186 Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 82/180 (45%), Positives = 122/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 LQ +DRM +I LK + ++RTGR S ++LD V V+ YGS P+NQVAN++V EPRM+ Sbjct: 7 LQQAEDRMNKSIEALKHEFASIRTGRASVALLDKVMVDYYGSPSPINQVANISVPEPRMI 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V++ WDK M+ ++E+ I +S+LGLNP +G +R+ +P+ TEERR +VKV H AE +K Sbjct: 67 VIAPWDKTMIGAIEKAILQSDLGLNPGNDGAQIRLSIPQLTEERRKEIVKVVHKKAEDAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD + LKK K+ +ED + IQK+TD+ +K ID K+K+++ Sbjct: 127 VAVRNIRRDVNEALKKEEKAKTITEDDAKDGLDQIQKLTDAKVKQIDELKVVKEKDVLEV 186 >gi|51473353|ref|YP_067110.1| ribosome recycling factor [Rickettsia typhi str. Wilmington] gi|60390689|sp|Q68XL4|RRF_RICTY RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|51459665|gb|AAU03628.1| ribosome recycling factor [Rickettsia typhi str. Wilmington] Length = 186 Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 84/175 (48%), Positives = 117/175 (66%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 ++++M I L ++ LRTGR S + LD V VEAYGS VPL QVA+++ + R + V Sbjct: 10 LQEKMEKAIKVLGNELKGLRTGRASVNFLDSVTVEAYGSKVPLAQVASLSTPDARTINVQ 69 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 VWDK MV+SVE+GI +NLGL +GQ++R+P+P TEERR VK+AH Y E++KIS+ Sbjct: 70 VWDKSMVSSVEKGITIANLGLTHATDGQLIRLPIPSLTEERRKEFVKLAHKYGEETKISL 129 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RNIRRDG++ LKK K +D SL +QK+TD +DS ++K+ EIM Sbjct: 130 RNIRRDGIEELKKLEKDNIIVKDEYHSLSEQVQKLTDEYSSKVDSAIKQKEHEIM 184 >gi|114562451|ref|YP_749964.1| ribosome recycling factor [Shewanella frigidimarina NCIMB 400] gi|122300314|sp|Q085D9|RRF_SHEFN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|114333744|gb|ABI71126.1| ribosome recycling factor [Shewanella frigidimarina NCIMB 400] Length = 185 Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 82/177 (46%), Positives = 114/177 (64%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 + ++RM + K M +RTGR PS+LD ++V YGS PL QVANV V + R L V Sbjct: 8 DAQERMSKCVDATKNQMAKVRTGRAHPSLLDSIQVSCYGSMSPLKQVANVGVEDSRTLTV 67 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 +V+D+ MV +VE+ I S+LGLNP+ G LRIP+P TEERR +KV AE +I+ Sbjct: 68 NVFDRSMVQAVEKAIMSSDLGLNPMSAGATLRIPLPSLTEERRKDFIKVVRNEAENGRIA 127 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +RN+RRD + +KK K+ +ED V E+++QK TDS+IKNID K+KE+M Sbjct: 128 IRNVRRDAISEVKKLEKAKACTEDDVRRSEDEVQKHTDSSIKNIDQILAAKEKELME 184 >gi|261344733|ref|ZP_05972377.1| ribosome recycling factor [Providencia rustigianii DSM 4541] gi|282567175|gb|EFB72710.1| ribosome recycling factor [Providencia rustigianii DSM 4541] Length = 185 Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 82/179 (45%), Positives = 118/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ +DRM ++ LK + +RTGR SPS+LD + VE YGS PL Q+ANVTV + R L Sbjct: 7 KDAQDRMEKSLEALKSQISKIRTGRASPSLLDGIVVEYYGSATPLRQLANVTVEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +SV+D+ M ++E+ I S+LGLNP G V+R+P+P TEERR L+KV AE+ +I Sbjct: 67 ISVFDRSMSPAIEKAIMASDLGLNPSSAGTVIRVPLPALTEERRKDLIKVVRGEAEQGRI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD D +K K + SED ++DIQK+TDS IK +D +K+ E+M F Sbjct: 127 AIRNVRRDANDKVKALLKDKEISEDDERRSQDDIQKLTDSFIKKVDEALAQKEAELMEF 185 >gi|291533215|emb|CBL06328.1| ribosome recycling factor [Megamonas hypermegale ART12/1] Length = 185 Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 84/175 (48%), Positives = 117/175 (66%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 +RM T+S K + +LR GR +P++LD V VE YGS VP+NQV N++V EPRM+++ W Sbjct: 11 ERMKKTLSAAKSEFASLRAGRATPALLDKVMVEYYGSLVPVNQVGNISVPEPRMILIQPW 70 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 +K M+ +E+ I S+LGL+P +G V+R+ +P+ TEERR LVK + AE+SK+SVRN Sbjct: 71 EKPMLHEIEKAITRSDLGLSPNNDGTVIRLNIPQLTEERRTDLVKTLNKRAEESKVSVRN 130 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 IRRD + +KK K+ +ED + DIQKI D IK ID EK+KEIM Sbjct: 131 IRRDANEAIKKLEKAKSITEDDAKKAQEDIQKIVDKYIKEIDIARAEKEKEIMEV 185 >gi|87199393|ref|YP_496650.1| ribosome recycling factor [Novosphingobium aromaticivorans DSM 12444] gi|123489816|sp|Q2G8K7|RRF_NOVAD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|87135074|gb|ABD25816.1| ribosome recycling factor [Novosphingobium aromaticivorans DSM 12444] Length = 185 Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 80/164 (48%), Positives = 108/164 (65%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 D +++ RM + L+ D+ LRTGR + ++LD + VE YGSH+PL QVA V+ EPR+ Sbjct: 5 DKADLERRMKGAVESLRGDLSGLRTGRANTALLDPIVVEVYGSHMPLAQVATVSAPEPRL 64 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 L V VWDK V VE+ I + LGLNPI +G LR+P+P+ TEERR L K+A YAE + Sbjct: 65 LSVQVWDKSNVTPVEKAIRSAGLGLNPISDGNTLRLPIPDLTEERRKELAKLASKYAENA 124 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTI 169 +I++RN+RRDGMD LK + SED E D+QK+TD I Sbjct: 125 RIAIRNVRRDGMDALKADESKKEISEDERKRAETDLQKLTDDII 168 >gi|188588017|ref|YP_001920606.1| ribosome recycling factor [Clostridium botulinum E3 str. Alaska E43] gi|251779568|ref|ZP_04822488.1| ribosome recycling factor [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|238689676|sp|B2V4F7|RRF_CLOBA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|188498298|gb|ACD51434.1| ribosome recycling factor [Clostridium botulinum E3 str. Alaska E43] gi|243083883|gb|EES49773.1| ribosome recycling factor [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 185 Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 76/180 (42%), Positives = 125/180 (69%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++N +++M T++ LK ++ T++ GR +PSMLD ++++ YGS PL+Q AN++ EPR+L Sbjct: 6 IKNAEEKMQKTVTVLKSELGTMKAGRANPSMLDKIQIDYYGSMCPLSQAANISSPEPRVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ W+K+++ +E+ I +S+LGLNP +G ++R+ +PE TEE R LVK E+SK Sbjct: 66 MITPWEKQLLKEIEKAILKSDLGLNPSNDGSIIRLVIPELTEETRKDLVKKVKKTGEESK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++R+IRRD D +K +K G SED V E+D+QK TD+ IK ID +K+KEI+ Sbjct: 126 VAIRSIRRDANDKIKALKKDGDLSEDQVKKGEDDVQKKTDAIIKEIDKIIVDKEKEILAI 185 >gi|20807853|ref|NP_623024.1| ribosome recycling factor [Thermoanaerobacter tengcongensis MB4] gi|254479463|ref|ZP_05092790.1| ribosome recycling factor [Carboxydibrachium pacificum DSM 12653] gi|22001937|sp|Q8RA24|RRF_THETN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|20516416|gb|AAM24628.1| Ribosome recycling factor [Thermoanaerobacter tengcongensis MB4] gi|214034606|gb|EEB75353.1| ribosome recycling factor [Carboxydibrachium pacificum DSM 12653] Length = 184 Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 83/180 (46%), Positives = 122/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ ++RM T++ LK ++ +R GR +P++LD + V YG+ PLN++A +T EPR+L Sbjct: 5 LKDSEERMKKTLNVLKSELAAIRAGRANPALLDRITVNYYGTPTPLNRLATITAPEPRVL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV WD + +E+ I +S+LG+NP+ +G+VLR+ +PE TEERR LVK+ H AE+++ Sbjct: 65 VVQPWDVSQIGEIEKAIQKSDLGINPVSDGKVLRLVLPELTEERRKELVKLVHKKAEEAR 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I+VR IRRD D +KK K G+ SED E +IQK+TD IK ID E K+KEIM Sbjct: 125 IAVRQIRRDANDLVKKMEKDGEISEDERKRREEEIQKLTDKYIKEIDKMVEAKEKEIMEI 184 >gi|289662904|ref|ZP_06484485.1| ribosome recycling factor [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289670225|ref|ZP_06491300.1| ribosome recycling factor [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 185 Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 83/184 (45%), Positives = 122/184 (66%), Gaps = 2/184 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +NQ+ Q+ + RM +I L+ + T+RTGR SP++LD +KV+AYG+ PLNQVA+++V Sbjct: 2 LNQI--KQDAQTRMTKSIDALRHSLTTVRTGRASPALLDGIKVKAYGTDTPLNQVASISV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R LV+S++DK M+ VE+ I+ S+LGL P V G V+R+ +P TEERR L K H Sbjct: 60 SEGRSLVISLFDKGMIKDVEKAIYASDLGLTPTVVGTVIRLNLPPLTEERRKELSKSVHG 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E SK+++RNIRRD +K K +ED E+DIQK+TD IK++D + K+ Sbjct: 120 EGEDSKVAIRNIRRDANQQVKDLLKDKAVTEDEARGAEDDIQKLTDKAIKDVDEVVKAKE 179 Query: 181 KEIM 184 +E+M Sbjct: 180 QELM 183 >gi|238754804|ref|ZP_04616155.1| Ribosome-recycling factor [Yersinia ruckeri ATCC 29473] gi|238706964|gb|EEP99330.1| Ribosome-recycling factor [Yersinia ruckeri ATCC 29473] Length = 185 Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 81/174 (46%), Positives = 116/174 (66%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RMG + + + +RTGR SPS+LD ++V+ YGS PL Q+ANV V + R L ++V+D Sbjct: 12 RMGKCVDAFQNHISKIRTGRASPSILDGIQVDYYGSATPLRQLANVVVEDSRTLAITVFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + + A+VE+ I S+LGLNP G V+R+P+P TEERR L+KVA AE+ ++SVRN+ Sbjct: 72 RSLNAAVEKAIMSSDLGLNPSSAGSVIRVPLPPLTEERRKDLIKVARGEAEQGRVSVRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD D +K K SED ++D+QK+TDS IK ID+ EK+ E+M+F Sbjct: 132 RRDTNDKVKALLKDKAISEDDDRRCQDDVQKMTDSYIKKIDTALAEKEAELMNF 185 >gi|294500908|ref|YP_003564608.1| ribosome recycling factor [Bacillus megaterium QM B1551] gi|295706254|ref|YP_003599329.1| ribosome recycling factor [Bacillus megaterium DSM 319] gi|294350845|gb|ADE71174.1| ribosome recycling factor [Bacillus megaterium QM B1551] gi|294803913|gb|ADF40979.1| ribosome recycling factor [Bacillus megaterium DSM 319] Length = 185 Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 80/178 (44%), Positives = 118/178 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 LQN K+RM I +++ ++R GR S S+LD V VE YG+ P+NQ+A V+V E RML Sbjct: 6 LQNAKERMEKAIQSFSRELASIRAGRASASLLDRVTVEYYGAPTPINQLAQVSVPEARML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +DK + VE+ I +S+LGL P +G ++R+ +P TEERR LVK+ YAE++K Sbjct: 66 VIQPYDKSQIGEVEKAILKSDLGLTPTSDGTIIRLSIPALTEERRRELVKMVKKYAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++VRN+RRD D KK K G+ +ED + +DIQK+TD I +D ++K++EIM Sbjct: 126 VAVRNVRRDANDDFKKLEKKGEITEDDLRGYSDDIQKLTDDHIVKVDKVAKDKEEEIM 183 >gi|58581596|ref|YP_200612.1| ribosome recycling factor [Xanthomonas oryzae pv. oryzae KACC10331] gi|84623520|ref|YP_450892.1| ribosome recycling factor [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|166712735|ref|ZP_02243942.1| ribosome recycling factor [Xanthomonas oryzae pv. oryzicola BLS256] gi|188577166|ref|YP_001914095.1| ribosome recycling factor [Xanthomonas oryzae pv. oryzae PXO99A] gi|62900777|sp|Q5H1E4|RRF_XANOR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|123522271|sp|Q2P4A9|RRF_XANOM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238689544|sp|B2SR02|RRF_XANOP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|58426190|gb|AAW75227.1| ribosome recycling factor [Xanthomonas oryzae pv. oryzae KACC10331] gi|84367460|dbj|BAE68618.1| ribosome recycling factor [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188521618|gb|ACD59563.1| ribosome recycling factor [Xanthomonas oryzae pv. oryzae PXO99A] Length = 185 Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 81/177 (45%), Positives = 118/177 (66%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ + RM +I L+ + T+RTGR SP++LD +KV+AYG+ PLNQVA+++V E R LV Sbjct: 7 QDAQTRMTKSIDALRHSLTTVRTGRASPALLDGIKVKAYGTDTPLNQVASISVSEGRSLV 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S++DK M+ VE+ I+ S+LGL P V G V+R+ +P TEERR L K H E SK+ Sbjct: 67 ISLFDKGMIKDVEKAIYASDLGLTPTVVGTVIRLNLPPLTEERRKELSKSVHGEGEDSKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++RNIRRD +K K +ED E+DIQK+TD IK++D + K++E+M Sbjct: 127 AIRNIRRDANQQVKDLLKDKAVTEDEARGAEDDIQKLTDKAIKDVDEVVKAKEQELM 183 >gi|307129823|ref|YP_003881839.1| ribosome recycling factor [Dickeya dadantii 3937] gi|306527352|gb|ADM97282.1| ribosome recycling factor [Dickeya dadantii 3937] Length = 185 Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 82/174 (47%), Positives = 114/174 (65%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM + K + +RTGR SPS+LD + VE YGS PL Q+AN+ V + R L V+V+D Sbjct: 12 RMDKCVEAFKNQISKVRTGRASPSLLDGIHVEYYGSATPLRQLANIVVEDTRTLAVTVFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + + +VE+ I S+LGLNP+ G V+R+P+P TEERR L+KV AE+S+++VRN+ Sbjct: 72 RTLGPAVEKAIMASDLGLNPMSAGTVIRVPLPPLTEERRKDLIKVVRGEAEQSRVAVRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD D LK K SED ++D+QK+TDS IK ID+ EK+KE+M F Sbjct: 132 RRDANDKLKAQLKEKTISEDDERRSQDDVQKLTDSFIKKIDAVLAEKEKELMDF 185 >gi|288553032|ref|YP_003424967.1| ribosome recycling factor [Bacillus pseudofirmus OF4] gi|288544192|gb|ADC48075.1| ribosome recycling factor [Bacillus pseudofirmus OF4] Length = 185 Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 80/179 (44%), Positives = 121/179 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q+ K+RM I L +++ LR GR +P++LD V VE YG+ PLNQ+A +TV E R+L Sbjct: 6 MQDAKERMTKAIESLNRELAKLRAGRANPAILDRVTVEYYGAETPLNQLATITVPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +DK + +ER I +++LGL P +G V+RI +P TEERR LVK+ AE+ K Sbjct: 66 MIQPFDKTSMNDIERAIQKADLGLTPSNDGTVIRIAIPPLTEERRRELVKLVKKSAEEGK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRN+RRD D LKK +K G+ +ED + +D+QK+TD I +ID+ ++K+KEIM Sbjct: 126 VAVRNVRRDANDDLKKLQKDGEMTEDELRRYTDDVQKLTDKHISDIDAVADKKEKEIME 184 >gi|51892632|ref|YP_075323.1| ribosome recycling factor [Symbiobacterium thermophilum IAM 14863] gi|60390686|sp|Q67PB4|RRF_SYMTH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|51856321|dbj|BAD40479.1| ribosome recycling factor [Symbiobacterium thermophilum IAM 14863] Length = 185 Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 74/180 (41%), Positives = 118/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +++ ++RM + ++++ +R R +P++LD V+VEAYGS VP+N VA + V +PR L Sbjct: 6 IKDAEERMKKAVEVFRQELAGMRANRATPALLDKVRVEAYGSEVPVNNVATIEVPDPRTL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WD+ ++ ++ER I+ S+LGLNP +GQV+R+ +P TEERR LVKV E+ + Sbjct: 66 VIKPWDRSLIKAIERAINASDLGLNPTNDGQVIRLSIPPMTEERRRELVKVVAKRTEEQR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD + +KK K SED ++++QK+TD IK +D K+KEIM Sbjct: 126 VAIRNIRRDANEQIKKLEKDKAVSEDESKRAQDEVQKLTDKYIKEVDQLMAAKEKEIMEV 185 >gi|42527846|ref|NP_972944.1| ribosome recycling factor [Treponema denticola ATCC 35405] gi|47116998|sp|P61310|RRF_TREDE RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|41818674|gb|AAS12863.1| ribosome recycling factor [Treponema denticola ATCC 35405] Length = 185 Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 77/178 (43%), Positives = 119/178 (66%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N +++M T+ LK++ LRTGR S ++ D ++V YG PLNQ+AN+++ E R++V Sbjct: 7 KNCEEKMKKTVVALKEEFNMLRTGRASSALFDKIRVNCYGESTPLNQLANISIPEARLVV 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + WDK ++ +E+ + +++L +NP +G+V+RI +P TE+RR L K A AE S++ Sbjct: 67 IQPWDKGLLVEIEKAVLQADLSVNPTNDGKVIRIAIPPLTEDRRKDLAKKAKTIAENSRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 SVRNIRRDG+D KK +K GK SED + + E+ QK TD+ I I+ E K+KEIM Sbjct: 127 SVRNIRRDGIDEAKKLQKDGKISEDQLKTAEDAFQKSTDAYIAEINKVLEAKEKEIME 184 >gi|268590529|ref|ZP_06124750.1| ribosome recycling factor [Providencia rettgeri DSM 1131] gi|291314115|gb|EFE54568.1| ribosome recycling factor [Providencia rettgeri DSM 1131] Length = 185 Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 82/179 (45%), Positives = 117/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ +DRM ++ K + +RTGR SPS+LD + VE YGS PL Q+ANVTV + R L Sbjct: 7 KDAQDRMEKSLEAFKSQISKVRTGRASPSLLDGITVEYYGSATPLRQLANVTVEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +SV+D+ M ++E+ I S+LGLNP G V+R+P+P TEERR L+KV AE+ +I Sbjct: 67 ISVFDRSMSPAIEKAIMASDLGLNPSSAGTVIRVPLPPLTEERRKDLIKVVRGDAEQGRI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD D +K K + SED ++DIQK+TDS IK +D +K+ E+M F Sbjct: 127 AVRNVRRDANDKVKALLKDKEISEDDERRSQDDIQKLTDSYIKKVDEALAQKEAELMEF 185 >gi|294624553|ref|ZP_06703230.1| ribosome releasing factor [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292601159|gb|EFF45219.1| ribosome releasing factor [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 185 Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 81/177 (45%), Positives = 118/177 (66%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ + RM +I L+ + T+RTGR SP++LD +KV+AYG+ PLNQVA+++V E R LV Sbjct: 7 QDAQTRMTKSIDALRHSLTTIRTGRASPALLDGIKVKAYGADTPLNQVASISVSEGRSLV 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S++DK M+ VE+ I+ S+LGL P V G V+R+ +P TEERR L K H E SK+ Sbjct: 67 ISLFDKGMIKDVEKAIYASDLGLTPTVVGTVIRLNLPPLTEERRKELSKSVHGEGEDSKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++RNIRRD +K K +ED E+DIQK+TD IK++D + K++E+M Sbjct: 127 AIRNIRRDANQQVKDLLKDKAVTEDEARGAEDDIQKLTDKAIKDVDEVVKGKEQELM 183 >gi|183597594|ref|ZP_02959087.1| hypothetical protein PROSTU_00876 [Providencia stuartii ATCC 25827] gi|188023090|gb|EDU61130.1| hypothetical protein PROSTU_00876 [Providencia stuartii ATCC 25827] Length = 185 Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 81/179 (45%), Positives = 118/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ +DRM ++ LK + +RTGR SPS+LD + V+ YG+ PL Q+ANVTV + R L Sbjct: 7 KDAQDRMEKSVEALKNQISKVRTGRASPSLLDGIMVDYYGAATPLRQLANVTVEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +SV+D+ M ++E+ I S+LGLNP G V+R+P+P TEERR L+KV A AE+ ++ Sbjct: 67 ISVFDRSMSPAIEKAIMASDLGLNPSSAGTVIRVPLPPLTEERRKDLIKVVRAEAEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD D +K K + SED ++DIQK+TD IK +D +K+ E+M F Sbjct: 127 AVRNIRRDANDKIKALLKDKEISEDEERRSQDDIQKLTDGYIKKVDEALAQKEAELMEF 185 >gi|18310679|ref|NP_562613.1| ribosome recycling factor [Clostridium perfringens str. 13] gi|110800605|ref|YP_696384.1| ribosome recycling factor [Clostridium perfringens ATCC 13124] gi|110802993|ref|YP_698984.1| ribosome recycling factor [Clostridium perfringens SM101] gi|168208114|ref|ZP_02634119.1| ribosome recycling factor [Clostridium perfringens E str. JGS1987] gi|168211415|ref|ZP_02637040.1| ribosome recycling factor [Clostridium perfringens B str. ATCC 3626] gi|168214470|ref|ZP_02640095.1| ribosome recycling factor [Clostridium perfringens CPE str. F4969] gi|168216984|ref|ZP_02642609.1| ribosome recycling factor [Clostridium perfringens NCTC 8239] gi|169342698|ref|ZP_02863739.1| ribosome recycling factor [Clostridium perfringens C str. JGS1495] gi|182627138|ref|ZP_02954853.1| ribosome recycling factor [Clostridium perfringens D str. JGS1721] gi|20141648|sp|Q46293|RRF_CLOPE RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|122956643|sp|Q0SSC3|RRF_CLOPS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|123344670|sp|Q0TPQ6|RRF_CLOP1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|18145360|dbj|BAB81403.1| ribosome recycling factor [Clostridium perfringens str. 13] gi|110675252|gb|ABG84239.1| ribosome recycling factor [Clostridium perfringens ATCC 13124] gi|110683494|gb|ABG86864.1| ribosome recycling factor [Clostridium perfringens SM101] gi|169299204|gb|EDS81274.1| ribosome recycling factor [Clostridium perfringens C str. JGS1495] gi|170660605|gb|EDT13288.1| ribosome recycling factor [Clostridium perfringens E str. JGS1987] gi|170710572|gb|EDT22754.1| ribosome recycling factor [Clostridium perfringens B str. ATCC 3626] gi|170714030|gb|EDT26212.1| ribosome recycling factor [Clostridium perfringens CPE str. F4969] gi|177907475|gb|EDT70141.1| ribosome recycling factor [Clostridium perfringens D str. JGS1721] gi|182380949|gb|EDT78428.1| ribosome recycling factor [Clostridium perfringens NCTC 8239] Length = 185 Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 78/175 (44%), Positives = 120/175 (68%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 ++M TI+ L ++ T++ GR +P+MLD ++VE YGS PLNQVANV+ EPR+LV++ W Sbjct: 11 EKMNKTINSLNSELATMKAGRANPTMLDRIQVEYYGSMCPLNQVANVSSPEPRLLVITPW 70 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 +K M+ +E+ I +S+LG+NP +G ++R+ VPE TEE R LVK E++K+++R+ Sbjct: 71 EKPMLKEIEKAILKSDLGINPNNDGTIIRLLVPELTEETRKNLVKNVKKVGEQAKVAIRS 130 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 IR+D D +K +K G +ED + E+DIQK+TD +K ID+ K+KEIM Sbjct: 131 IRKDANDKVKNFKKEGTITEDEMKKGEDDIQKVTDKFVKEIDTIVAAKEKEIMSI 185 >gi|157962701|ref|YP_001502735.1| ribosome recycling factor [Shewanella pealeana ATCC 700345] gi|189044076|sp|A8H6L3|RRF_SHEPA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|157847701|gb|ABV88200.1| ribosome recycling factor [Shewanella pealeana ATCC 700345] Length = 185 Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 81/174 (46%), Positives = 115/174 (66%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM + K M +RTGR PS+LD ++V YGS PL QVA+V++ + R L VSV+D Sbjct: 12 RMDKCVESTKTQMAKVRTGRAHPSLLDTIQVPYYGSLTPLKQVASVSIGDARTLTVSVFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + M+A+VE+ I S+LGLNP+ G +RIP+P TEERR L+KV A AE +I++RN+ Sbjct: 72 RTMIAAVEKAIMSSDLGLNPMSAGATIRIPLPALTEERRKDLIKVVRAEAENGRIAIRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD ++K+ K + +ED V E+D+QK+TD+ IK ID K+KE+M F Sbjct: 132 RRDANSNVKELEKEKECTEDDVRRSEDDVQKLTDAHIKLIDEILAAKEKELMEF 185 >gi|325923975|ref|ZP_08185564.1| ribosome recycling factor [Xanthomonas gardneri ATCC 19865] gi|325545558|gb|EGD16823.1| ribosome recycling factor [Xanthomonas gardneri ATCC 19865] Length = 185 Score = 165 bits (417), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 84/184 (45%), Positives = 122/184 (66%), Gaps = 2/184 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +NQ+ Q+ RM +I L+ + T+RTGR SP++LD +KV+AYG+ PLNQVA+++V Sbjct: 2 LNQI--KQDALTRMTKSIDALRHSLTTVRTGRASPALLDNIKVKAYGTDTPLNQVASISV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R LV+S++DK M+ VE+ I+ S+LGL P V G V+R+ +P TEERR L K H Sbjct: 60 SEGRSLVISLFDKGMIKDVEKAIYASDLGLTPTVVGTVIRLNLPPLTEERRKELSKSVHG 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E SK+++RNIRRD +K K +ED S E+DIQK+TD IK++D + K+ Sbjct: 120 EGEDSKVAIRNIRRDANQQVKDLLKDKAVTEDEARSAEDDIQKLTDKAIKDVDEVVKGKE 179 Query: 181 KEIM 184 +E+M Sbjct: 180 QELM 183 >gi|120599549|ref|YP_964123.1| ribosome recycling factor [Shewanella sp. W3-18-1] gi|146292454|ref|YP_001182878.1| ribosome recycling factor [Shewanella putrefaciens CN-32] gi|166231227|sp|A4Y546|RRF_SHEPC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166231510|sp|A1RLM4|RRF_SHESW RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|120559642|gb|ABM25569.1| ribosome recycling factor [Shewanella sp. W3-18-1] gi|145564144|gb|ABP75079.1| ribosome recycling factor [Shewanella putrefaciens CN-32] gi|319425756|gb|ADV53830.1| ribosome recycling factor [Shewanella putrefaciens 200] Length = 185 Score = 165 bits (417), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 81/183 (44%), Positives = 117/183 (63%), Gaps = 4/183 (2%) Query: 7 LQNIK----DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLE 62 ++NIK +RMG + K M +RTGR PS+LD ++V YG+ PLNQVANV V + Sbjct: 2 IENIKKDAQERMGKCVDATKNQMAKVRTGRAHPSLLDSIQVSYYGTMTPLNQVANVGVED 61 Query: 63 PRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 R L V+V+D+ + +VE+ I S+LGLNP+ G LRIP+P TEERR +KV A A Sbjct: 62 SRTLSVTVFDRSAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVVRAEA 121 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 E ++++RN+RRD + +KK K+ + +ED V E+D+QK TD+ IK +D K+ E Sbjct: 122 EGGRVAIRNVRRDAISEVKKLEKAKECTEDDVRRFEDDVQKFTDAHIKKVDEILAAKEIE 181 Query: 183 IMH 185 +M Sbjct: 182 LME 184 >gi|302874652|ref|YP_003843285.1| ribosome recycling factor [Clostridium cellulovorans 743B] gi|307690735|ref|ZP_07633181.1| ribosome recycling factor [Clostridium cellulovorans 743B] gi|302577509|gb|ADL51521.1| ribosome recycling factor [Clostridium cellulovorans 743B] Length = 185 Score = 165 bits (417), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 76/180 (42%), Positives = 123/180 (68%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + N +++M T++ LKKD+ TL+ G+ +P+MLD ++VE YG+ P+NQVAN++ EPR+L Sbjct: 6 ISNAEEKMKKTVTVLKKDLNTLKAGKANPTMLDRIEVEYYGTMTPINQVANISAPEPRIL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WDK + ++E+ I S+LG+NP +G V+R+ VPE TEE R + K + E +K Sbjct: 66 LIQPWDKGSLKAIEKAILISDLGINPNSDGNVIRLIVPELTEETRRDITKKVKKFGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VR+IRRD D +K +K +ED + S E+++QK TD+ +K IDS +K+KE+M Sbjct: 126 VAVRSIRRDANDKIKNLKKENTITEDEMKSAEDNVQKKTDAFVKEIDSIISDKEKEVMSL 185 >gi|150016075|ref|YP_001308329.1| ribosome recycling factor [Clostridium beijerinckii NCIMB 8052] gi|189044050|sp|A6LSP3|RRF_CLOB8 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|149902540|gb|ABR33373.1| ribosome recycling factor [Clostridium beijerinckii NCIMB 8052] Length = 185 Score = 165 bits (417), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 77/180 (42%), Positives = 122/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +QN +++M TIS LK D+ T++ GR +P+MLD + VE YGS PL+QVANV+ EPR+L Sbjct: 6 IQNAEEKMKKTISVLKSDLSTMKAGRANPTMLDRIHVEYYGSMCPLSQVANVSAPEPRVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ W+K ++ +E+ I +S+LGLNP +G ++R+ +PE TEE R LVK E++K Sbjct: 66 MITPWEKPLLKEIEKAILKSDLGLNPSSDGSIIRLVIPELTEETRKTLVKNVKKTGEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++R+IR+ D +K +K SED V E+++QK TD+ +K IDS K+KE++ Sbjct: 126 VAIRSIRKTANDKIKALKKDEDLSEDQVKKAEDEVQKKTDAVVKEIDSIIAAKEKEVLSV 185 >gi|257458508|ref|ZP_05623645.1| ribosome recycling factor [Treponema vincentii ATCC 35580] gi|257444105|gb|EEV19211.1| ribosome recycling factor [Treponema vincentii ATCC 35580] Length = 184 Score = 165 bits (417), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 76/174 (43%), Positives = 116/174 (66%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 ++M +I+ LK + LRTGR S S+ D ++V++YG PLNQVA +++ E R++V+ W Sbjct: 10 EKMKKSIAALKDEFNALRTGRASTSLFDKIRVDSYGQPTPLNQVATISIPEARLVVIQPW 69 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 DK ++ +E+ I +S L LNP +G+++RI +P TEERR L K A +AE+ ++++RN Sbjct: 70 DKSLLGEIEKAILKSELSLNPANDGKLIRIAIPPLTEERRKELAKQAKNFAEQCRVAIRN 129 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 IRRDG+D KK +K G SED + + E QK TD+ I +I+ EK+KEIM Sbjct: 130 IRRDGIDEAKKQQKDGLLSEDALKTAEEKFQKATDAHINDINKLLAEKEKEIME 183 >gi|68536249|ref|YP_250954.1| ribosome recycling factor [Corynebacterium jeikeium K411] gi|260578949|ref|ZP_05846852.1| ribosome recycling factor [Corynebacterium jeikeium ATCC 43734] gi|123650872|sp|Q4JV21|RRF_CORJK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|68263848|emb|CAI37336.1| frr [Corynebacterium jeikeium K411] gi|258602923|gb|EEW16197.1| ribosome recycling factor [Corynebacterium jeikeium ATCC 43734] Length = 185 Score = 165 bits (417), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 76/175 (43%), Positives = 121/175 (69%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 ++RM ++ ++D+ T+RTGR +PSM + V E YG P+ Q+A ++V EPRML++ Sbjct: 10 EERMTSSVEHAREDLTTIRTGRANPSMFNGVVAEYYGVPTPITQMATISVPEPRMLLIKP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +++ + ++E I S+LG+NP +GQVLR+ +P+ TEERR +VKVA + E +KI++R Sbjct: 70 YEQSTMDAIENAIRNSDLGVNPTNDGQVLRVTIPQLTEERRKEMVKVAKSKGEDAKIAIR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 NIRR GM+ L K +K G+A ED V + E D++KIT S ++ +DS E K+KE++ Sbjct: 130 NIRRKGMEQLGKIQKDGEAGEDEVRAAEKDLEKITHSYVEQVDSLVEAKEKELLE 184 >gi|147677590|ref|YP_001211805.1| ribosome recycling factor [Pelotomaculum thermopropionicum SI] gi|189044063|sp|A5D2T8|RRF_PELTS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|146273687|dbj|BAF59436.1| ribosome recycling factor [Pelotomaculum thermopropionicum SI] Length = 185 Score = 165 bits (417), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 77/172 (44%), Positives = 117/172 (68%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M TI +KK+ +LR GR +P++LD V V YG+ P+NQ+AN++V E R+LVV WDK Sbjct: 13 MKKTIEVVKKEFASLRAGRATPALLDKVMVNYYGTPTPVNQLANISVPEARLLVVQPWDK 72 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 ++ +ER I +S+LG+ P +G V+R+ +P+ T+ERR L+KV AE+ ++++RNIR Sbjct: 73 TVLPEIERAILKSDLGITPASDGNVIRLAIPQLTQERRAELMKVIKKKAEEGRVAIRNIR 132 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 RD + LK +K GK SED + ++++QK+TD IK IDS K++EIM Sbjct: 133 RDTNEQLKSQQKDGKMSEDELKRSQDEVQKLTDRYIKEIDSLLSTKEQEIMQ 184 >gi|21230827|ref|NP_636744.1| ribosome recycling factor [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769174|ref|YP_243936.1| ribosome recycling factor [Xanthomonas campestris pv. campestris str. 8004] gi|188992321|ref|YP_001904331.1| ribosome recycling factor [Xanthomonas campestris pv. campestris str. B100] gi|24418655|sp|Q8PAV6|RRF_XANCP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|81304866|sp|Q4USQ7|RRF_XANC8 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|229890170|sp|B0RW69|RRF_XANCB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|21112430|gb|AAM40668.1| ribosome recycling factor [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574506|gb|AAY49916.1| ribosome recycling factor [Xanthomonas campestris pv. campestris str. 8004] gi|167734081|emb|CAP52287.1| unnamed protein product [Xanthomonas campestris pv. campestris] Length = 185 Score = 165 bits (417), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 82/184 (44%), Positives = 123/184 (66%), Gaps = 2/184 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +NQ+ Q+ + RM +I L+ + T+RTGR SP++LD +KV+AYG+ PLNQVA+++V Sbjct: 2 LNQI--KQDAQTRMTKSIDALRHSLTTVRTGRASPALLDNIKVKAYGTDTPLNQVASISV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R LV+S++DK M+ VE+ I+ S+LGL P V G V+R+ +P TEERR L K H Sbjct: 60 SEGRSLVISLFDKGMIKDVEKAIYASDLGLTPTVVGTVIRLNLPPLTEERRKELSKSVHG 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E +K+++RNIRRD +K K + +ED E+DIQK+TD IK++D + K+ Sbjct: 120 EGEDAKVAIRNIRRDANQQVKDLLKDKQVTEDEARGAEDDIQKLTDKAIKDVDEVVKGKE 179 Query: 181 KEIM 184 +E+M Sbjct: 180 QELM 183 >gi|295100640|emb|CBK98185.1| ribosome recycling factor [Faecalibacterium prausnitzii L2-6] Length = 184 Score = 165 bits (417), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 75/175 (42%), Positives = 118/175 (67%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 +D+M + L++++ T+R GR +P +LD V V+ YGS P+ QVA+V V E R L ++ Sbjct: 8 FEDKMKSAVEHLERELKTVRAGRANPGVLDKVTVDYYGSPTPIQQVASVAVSEARTLTIT 67 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 WD+ ++ ++ + I S++G+NPI +GQ +R+ P TEERR L K E++K++V Sbjct: 68 PWDRTLLRAISKAILASDVGINPIDDGQTIRLNFPAPTEERRKQLAKEVSKMGEEAKVAV 127 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RN+RRD MD K +K+G+ +ED ++E D+QK+TD +KNID+ EEK+KEIM Sbjct: 128 RNVRRDAMDKAKAMKKAGELTEDTQKTMEEDVQKLTDKYVKNIDAAVEEKQKEIM 182 >gi|251790742|ref|YP_003005463.1| ribosome recycling factor [Dickeya zeae Ech1591] gi|247539363|gb|ACT07984.1| ribosome recycling factor [Dickeya zeae Ech1591] Length = 185 Score = 165 bits (417), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 82/174 (47%), Positives = 112/174 (64%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM + K + +RTGR SPS+LD + VE YGS PL Q+AN+ V + R L V+V+D Sbjct: 12 RMDKCVEAFKNQISKVRTGRASPSLLDGIHVEYYGSSTPLRQLANIVVEDSRTLAVTVFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + + +VE+ I S+LGLNP+ G V+R+P+P TEERR L+KV AE+ ++SVRN+ Sbjct: 72 RTLGPAVEKAIMASDLGLNPMSAGTVIRVPLPPLTEERRKDLIKVVRGEAEQGRVSVRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD D LK K SED ++DIQK+TD IK ID+ EK+KE+M F Sbjct: 132 RRDANDKLKAQLKDKTISEDEERRAQDDIQKLTDGFIKKIDAALAEKEKELMDF 185 >gi|315186476|gb|EFU20236.1| ribosome recycling factor [Spirochaeta thermophila DSM 6578] Length = 184 Score = 165 bits (417), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 76/173 (43%), Positives = 115/173 (66%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM ++ LK + T+RTGR +P++ + + V YG PLNQVA+++ EPR++V+ WD Sbjct: 11 RMKKSVHALKDQLATIRTGRATPALFEKITVNYYGQQTPLNQVASISAPEPRLVVIQPWD 70 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K ++ +E+ I S+L LNP+ +G+VLRI +P TEERR +K+A AE+S++++RNI Sbjct: 71 KSVLQEIEKAIQSSDLSLNPVNDGKVLRINIPPLTEERRKEYIKLAKNVAEQSRVAIRNI 130 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 RRD + LKK+ K G+ SED E +IQK+T I I++ E K+KEIM Sbjct: 131 RRDANEALKKAEKEGRLSEDERKRGEEEIQKLTQKYIDEINNLLEAKEKEIME 183 >gi|163750354|ref|ZP_02157594.1| ribosome recycling factor [Shewanella benthica KT99] gi|161329844|gb|EDQ00830.1| ribosome recycling factor [Shewanella benthica KT99] Length = 185 Score = 165 bits (417), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 85/172 (49%), Positives = 109/172 (63%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM I K M +RTGR PS+LD +KV YGS PL QV NVT+ + R L VSV+D Sbjct: 12 RMAKCIEATKTQMAKVRTGRAHPSLLDSIKVSYYGSMTPLKQVGNVTIEDSRTLAVSVFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 M+ +VE+ I S+LGLNP+ G V+RIP+P TEERR L+KV A AE S+ISVRN+ Sbjct: 72 VSMIKAVEKAIMTSDLGLNPMSAGAVIRIPLPSLTEERRKDLIKVVRAEAENSRISVRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD +K K + +ED V E++IQK TD+ IK ID K+ E+M Sbjct: 132 RRDANSDVKVLEKEKECTEDDVHRTEDEIQKFTDAHIKQIDDLLSAKEAELM 183 >gi|307718990|ref|YP_003874522.1| ribosome recycling factor [Spirochaeta thermophila DSM 6192] gi|306532715|gb|ADN02249.1| ribosome recycling factor [Spirochaeta thermophila DSM 6192] Length = 184 Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 76/173 (43%), Positives = 115/173 (66%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM ++ LK + T+RTGR +P++ + + V YG PLNQVA+++ EPR++V+ WD Sbjct: 11 RMKKSVHALKDQLATIRTGRATPALFEKITVNYYGQQTPLNQVASISAPEPRLVVIQPWD 70 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K ++ +E+ I S+L LNP+ +G+VLRI +P TEERR +K+A AE+S++++RNI Sbjct: 71 KSVLQEIEKAIQSSDLSLNPVNDGKVLRINIPPLTEERRKEYIKLAKNVAEQSRVAIRNI 130 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 RRD + LKK+ K G+ SED E +IQK+T I I++ E K+KEIM Sbjct: 131 RRDANEALKKAEKEGQLSEDERKRGEEEIQKLTQKYIDEINNLLEAKEKEIME 183 >gi|323705413|ref|ZP_08116988.1| ribosome recycling factor [Thermoanaerobacterium xylanolyticum LX-11] gi|323535315|gb|EGB25091.1| ribosome recycling factor [Thermoanaerobacterium xylanolyticum LX-11] Length = 184 Score = 164 bits (416), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 71/180 (39%), Positives = 124/180 (68%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ +++M +I+ LK ++M++R GR +P++LD + ++ YG+ P+N++A +T EP+++ Sbjct: 5 LKSTEEKMKKSIAVLKNELMSIRAGRANPALLDRISIDYYGTMTPINKLATITAPEPKII 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WD ++ +E+ I +S+L +NP +G+++R+ P+ TEERR LVK+ H E++K Sbjct: 65 IIQPWDTSKISEIEKAIQKSDLNINPTSDGKIIRLVFPDLTEERRKELVKLVHKKGEEAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VR IRRD D +KK K+G+ SED E ++QK+TD IK ID E+K+KEIM Sbjct: 125 VAVRQIRRDANDAIKKMDKNGEISEDEKLKSEENVQKLTDKYIKEIDKILEQKEKEIMEI 184 >gi|90580974|ref|ZP_01236775.1| ribosome releasing factor [Vibrio angustum S14] gi|90437852|gb|EAS63042.1| ribosome releasing factor [Vibrio angustum S14] Length = 185 Score = 164 bits (416), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 81/179 (45%), Positives = 119/179 (66%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ + RM ++ L+ ++ +RTGR PS+LD + VE YG++ PLNQVANV + R L Sbjct: 7 QDAQTRMEKSVDALRNQLVKIRTGRAHPSLLDTIHVEYYGANTPLNQVANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+E+ VE+ I S+LGLNP+ G V+R+P+P TEERR LVK+ A AE+ ++ Sbjct: 67 ITVFDRELAPKVEKAIMMSDLGLNPMSAGTVIRVPLPPLTEERRRDLVKIVRAEAEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD +K K + SED +++IQK+TD IKNID+ E K+KE+M Sbjct: 127 AVRNIRRDANATVKGLLKDKEISEDDDRRAQDEIQKLTDDAIKNIDAVLEVKEKELMEV 185 >gi|257470869|ref|ZP_05634959.1| ribosome recycling factor (RRF) [Fusobacterium ulcerans ATCC 49185] gi|317065071|ref|ZP_07929556.1| ribosome Recycling Factor [Fusobacterium ulcerans ATCC 49185] gi|313690747|gb|EFS27582.1| ribosome Recycling Factor [Fusobacterium ulcerans ATCC 49185] Length = 188 Score = 164 bits (416), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 85/179 (47%), Positives = 121/179 (67%), Gaps = 2/179 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +++ ++MG I K ++R GR S SMLD VKVE YGS +PLNQV +V+ E R+L Sbjct: 7 VKSCNEKMGKAIEATKHKFTSIRAGRASVSMLDSVKVEQYGSDMPLNQVGSVSAPEARLL 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK +++ +E+ I +NLGL P +G+V+R+ +PE T ERR VK+A AE K Sbjct: 67 VIDPWDKSLISKIEKAIMAANLGLTPNNDGKVIRLVMPELTAERRKEYVKMAKTEAENGK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKA--SEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 ++VRNIR+DG + LKK K ++ SED V +LE +IQK+TD+ IK ID F +K+KEI Sbjct: 127 VAVRNIRKDGNNDLKKLSKDKESPISEDEVKTLEAEIQKLTDAHIKAIDDLFAKKEKEI 185 >gi|300724792|ref|YP_003714117.1| ribosome releasing factor [Xenorhabdus nematophila ATCC 19061] gi|297631334|emb|CBJ92029.1| ribosome releasing factor [Xenorhabdus nematophila ATCC 19061] Length = 185 Score = 164 bits (416), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 80/179 (44%), Positives = 116/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ +DRM ++ LK + +RTGR SPS+LD + VE YGS PL Q+ANV + R L Sbjct: 7 KDAQDRMEKSVEALKNQISKVRTGRASPSLLDGISVEYYGSATPLRQIANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ M A+VE+ I S+LGLNP G ++R+P+P TEERR L+KV AE+ ++ Sbjct: 67 ITVFDRSMTAAVEKAIMASDLGLNPASAGTIIRVPLPPLTEERRKDLIKVVRGEAEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RNIRRD D +K K + SED +++IQK+TDS IK +D K+ E+M F Sbjct: 127 SIRNIRRDANDKVKALLKEKEISEDEERRSQDEIQKLTDSFIKKVDEALANKETELMDF 185 >gi|91792914|ref|YP_562565.1| ribosome recycling factor [Shewanella denitrificans OS217] gi|123061015|sp|Q12NY4|RRF_SHEDO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|91714916|gb|ABE54842.1| ribosome recycling factor [Shewanella denitrificans OS217] Length = 185 Score = 164 bits (416), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 80/179 (44%), Positives = 116/179 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + ++RMG + K M +RTGR PS+LD ++V YG+ PL QVANV + + R L Sbjct: 6 LLDAQERMGKCVDATKNQMAKVRTGRAHPSLLDSIQVSYYGAMSPLKQVANVGIEDSRTL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+V+D+ MV +VE+ I S+LGLNP+ G LRIP+P TEERR +KV AE + Sbjct: 66 SVTVFDRSMVQAVEKAIMTSDLGLNPMTAGATLRIPLPALTEERRKDFIKVVRNEAENGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 I++RN+RRD + +KK K+ + +ED V E+++QK TD+ IKN+D K+KE+M Sbjct: 126 IAIRNVRRDAISEVKKLEKAKECTEDDVRRSEDEVQKYTDAHIKNVDEVLTAKEKELME 184 >gi|167624892|ref|YP_001675186.1| ribosome recycling factor [Shewanella halifaxensis HAW-EB4] gi|189044075|sp|B0TP80|RRF_SHEHH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|167354914|gb|ABZ77527.1| ribosome recycling factor [Shewanella halifaxensis HAW-EB4] Length = 185 Score = 164 bits (416), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 80/174 (45%), Positives = 115/174 (66%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM + K M +RTGR PS+LD ++V YGS PL QVA+V++ + R L VSV+D Sbjct: 12 RMDKCVESTKTQMAKVRTGRAHPSLLDTIQVPYYGSLTPLKQVASVSIGDARTLTVSVFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + M+A+VE+ I S+LGLNP+ G +RIP+P TEERR L+KV A AE +I++RN+ Sbjct: 72 RTMIAAVEKAIMSSDLGLNPMSAGATIRIPLPALTEERRKDLIKVVRAEAENGRIAIRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD ++K+ K + +ED V E+D+QK+TD+ IK +D K+KE+M F Sbjct: 132 RRDANSNVKELEKEKECTEDDVRRSEDDVQKLTDAHIKLVDDVLAAKEKELMEF 185 >gi|89075417|ref|ZP_01161834.1| ribosome releasing factor [Photobacterium sp. SKA34] gi|89048833|gb|EAR54403.1| ribosome releasing factor [Photobacterium sp. SKA34] Length = 185 Score = 164 bits (416), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 81/179 (45%), Positives = 119/179 (66%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ + RM ++ L+ ++ +RTGR PS+LD + VE YG++ PLNQVANV + R L Sbjct: 7 QDAQTRMEKSVDALRNQLVKIRTGRAHPSLLDTIHVEYYGANTPLNQVANVVAEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+E+ VE+ I S+LGLNP+ G V+R+P+P TEERR LVK+ A AE+ ++ Sbjct: 67 ITVFDRELAPKVEKAIMMSDLGLNPMSAGTVIRVPLPPLTEERRRDLVKIVRAEAEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD +K K + SED +++IQK+TD IKNID+ E K+KE+M Sbjct: 127 AVRNIRRDANATVKGLLKDKEISEDDDRRAQDEIQKLTDDAIKNIDAVLEVKEKELMEV 185 >gi|167037634|ref|YP_001665212.1| ribosome recycling factor [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040295|ref|YP_001663280.1| ribosome recycling factor [Thermoanaerobacter sp. X514] gi|256750775|ref|ZP_05491660.1| ribosome recycling factor [Thermoanaerobacter ethanolicus CCSD1] gi|300914379|ref|ZP_07131695.1| ribosome recycling factor [Thermoanaerobacter sp. X561] gi|307724385|ref|YP_003904136.1| ribosome recycling factor [Thermoanaerobacter sp. X513] gi|320116049|ref|YP_004186208.1| ribosome recycling factor [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|238687580|sp|B0K1P6|RRF_THEPX RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238687714|sp|B0K9R3|RRF_THEP3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166854535|gb|ABY92944.1| ribosome recycling factor [Thermoanaerobacter sp. X514] gi|166856468|gb|ABY94876.1| ribosome recycling factor [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256750358|gb|EEU63377.1| ribosome recycling factor [Thermoanaerobacter ethanolicus CCSD1] gi|300889314|gb|EFK84460.1| ribosome recycling factor [Thermoanaerobacter sp. X561] gi|307581446|gb|ADN54845.1| ribosome recycling factor [Thermoanaerobacter sp. X513] gi|319929140|gb|ADV79825.1| ribosome recycling factor [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 184 Score = 164 bits (415), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 82/180 (45%), Positives = 123/180 (68%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ +++M ++S LK ++ +R GR +P++LD + V+ YG+ PLN++A +T EPR+L Sbjct: 5 LKASEEKMQKSLSVLKNELAAIRAGRANPALLDRIMVDYYGTPTPLNRLATITAPEPRVL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV WD ++ +E+ I +S+LG+NP+ +G+VLR+ PE TEERR LVK+ H AE++K Sbjct: 65 VVQPWDVSKISDIEKAIQKSDLGINPVSDGKVLRLVFPELTEERRKELVKLVHKKAEEAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VR IRRD D +KK K+G+ SED E +IQK+TD IK ID E K+KEIM Sbjct: 125 VAVRQIRRDANDAVKKMEKNGEISEDERKKREEEIQKLTDKYIKEIDKVVEAKEKEIMEI 184 >gi|310779561|ref|YP_003967894.1| ribosome recycling factor [Ilyobacter polytropus DSM 2926] gi|309748884|gb|ADO83546.1| ribosome recycling factor [Ilyobacter polytropus DSM 2926] Length = 186 Score = 164 bits (415), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 80/177 (45%), Positives = 118/177 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + + +++M I K ++R GR + SMLD +KVE YGS +PLNQVANV+ E R+L Sbjct: 7 MNDCREKMDKAIESTKHKFASIRAGRANVSMLDGIKVEQYGSEMPLNQVANVSAPEARLL 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK ++ +E+ I SNLGL P +G+V+R+ +PE T ERR VK+A AE K Sbjct: 67 VIDPWDKSIIQKIEKTIMLSNLGLTPNNDGKVIRLQIPELTAERRKEYVKLAKTEAENGK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 I++RNIR+D +HL++ K G ++D + S E+D QKITD+ IK +D ++K+KEI Sbjct: 127 IAIRNIRKDANNHLRRLEKDGDITQDELKSFEDDTQKITDNHIKLVDELLKKKEKEI 183 >gi|313888244|ref|ZP_07821915.1| ribosome recycling factor [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845647|gb|EFR33037.1| ribosome recycling factor [Peptoniphilus harei ACS-146-V-Sch2b] Length = 185 Score = 164 bits (415), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 74/179 (41%), Positives = 121/179 (67%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N + RM +I L + + ++R GR + S+LD + V+ YG PLNQVA+++ E R+L Sbjct: 7 KNTESRMSKSIDSLTESLQSIRAGRANTSLLDRIYVDYYGQQSPLNQVASLSAPEARLLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + WD ++ +E+ I +S+LG+ P +G+++R+ +P+ TEERR L K+ YAE++K+ Sbjct: 67 IQPWDATLIPEIEKAIQKSDLGITPSNDGKIIRLVIPQLTEERRKDLTKLVGKYAEEAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RNIRRD M+ +KK+ K+ + SED + E DIQK+TD IK++DS +K+KE+M Sbjct: 127 SIRNIRRDAMEDIKKAEKAKEISEDDRKTYEEDIQKLTDKYIKDVDSVAADKEKELMEI 185 >gi|15614987|ref|NP_243290.1| ribosome recycling factor [Bacillus halodurans C-125] gi|14195173|sp|Q9KA66|RRF_BACHD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|10175044|dbj|BAB06143.1| ribosome recycling factor [Bacillus halodurans C-125] Length = 185 Score = 164 bits (414), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 80/179 (44%), Positives = 117/179 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + + RM L +++ LR GR +P+MLD + VE YG+ PLNQ+A ++V E R+L Sbjct: 6 LNDAEQRMTKATEALGRELAKLRAGRANPAMLDRITVEYYGAETPLNQLATISVPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +DK ++ +ER I +S+LGL P +G V+RI +P TEERR L K+ AE++K Sbjct: 66 VIQPFDKSSISDIERAIQKSDLGLTPSNDGTVIRITIPPLTEERRRDLTKLVKKSAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRNIRRD D LKK +K G+ +ED + + D+QK+TD I+ ID E K+KEIM Sbjct: 126 VAVRNIRRDANDDLKKRQKDGELTEDDLRRVTEDVQKLTDKYIEQIDQKAEAKEKEIME 184 >gi|322382357|ref|ZP_08056264.1| ribosome recycling factor-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153710|gb|EFX46085.1| ribosome recycling factor-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 180 Score = 164 bits (414), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 78/178 (43%), Positives = 119/178 (66%), Gaps = 1/178 (0%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 N +DRM ++ L+K++++LR GR +P++LD V+VE YG+ PLNQ+AN+ V +PR L++ Sbjct: 4 NAEDRMQKAVAALQKELVSLRAGRATPALLDRVQVEYYGAMTPLNQLANINVPDPRTLLI 63 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 WDK + ++E+ I +S LGL P +G ++R+ +P TEERRL LVK+ Y E +K++ Sbjct: 64 QPWDKSSLGAIEKAILKSELGLTPTSDGTMIRLTIPPLTEERRLELVKMTKKYGEDAKVA 123 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +RNIRRD + +KK K+ + SED ++DIQK TD I +D K+KEIM Sbjct: 124 IRNIRRDSNESIKKMEKT-EISEDESRRHQDDIQKSTDKYIAEVDKVLAAKEKEIMEV 180 >gi|307264902|ref|ZP_07546464.1| ribosome recycling factor [Thermoanaerobacter wiegelii Rt8.B1] gi|326389448|ref|ZP_08211015.1| ribosome recycling factor [Thermoanaerobacter ethanolicus JW 200] gi|306920160|gb|EFN50372.1| ribosome recycling factor [Thermoanaerobacter wiegelii Rt8.B1] gi|325994453|gb|EGD52878.1| ribosome recycling factor [Thermoanaerobacter ethanolicus JW 200] Length = 184 Score = 164 bits (414), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 82/180 (45%), Positives = 123/180 (68%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ +++M ++S LK ++ +R GR +P++LD + V+ YG+ PLN++A +T EPR+L Sbjct: 5 LKASEEKMQKSLSVLKNELAAIRAGRANPALLDRIMVDYYGTPTPLNRLATITAPEPRVL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV WD ++ +E+ I +S+LG+NP+ +G+VLR+ PE TEERR LVK+ H AE++K Sbjct: 65 VVQPWDVSKISDIEKAIQKSDLGINPVSDGKVLRLVFPELTEERRKELVKLVHKKAEEAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VR IRRD D +KK K+G+ SED E +IQK+TD IK ID E K+KEIM Sbjct: 125 VAVRQIRRDANDAVKKMEKNGEISEDERKKREEEIQKLTDKYIKEIDKAVEAKEKEIMEI 184 >gi|264679364|ref|YP_003279271.1| ribosome recycling factor [Comamonas testosteroni CNB-2] gi|299532323|ref|ZP_07045716.1| ribosome recycling factor [Comamonas testosteroni S44] gi|262209877|gb|ACY33975.1| ribosome recycling factor [Comamonas testosteroni CNB-2] gi|298719731|gb|EFI60695.1| ribosome recycling factor [Comamonas testosteroni S44] Length = 186 Score = 163 bits (413), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 81/177 (45%), Positives = 119/177 (67%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N + +MG +I LK ++ +RTGR +P++LD + VE YGS VPL+QVANV++L+ R + Sbjct: 8 KNTETKMGQSIEALKNNLARVRTGRANPALLDAIHVEYYGSMVPLSQVANVSLLDSRTIS 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K M A VE+ I ES+LGLNP G ++R+P+P +EERR + K+A E +KI Sbjct: 68 VQPWEKNMAAKVEKAIRESDLGLNPASMGDLIRVPMPPMSEERRKEMTKLARNEGENAKI 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +VRN+RRD + +KK K +ASED E +IQKITD I +D+ K+++IM Sbjct: 128 AVRNLRRDANEGVKKLVKDKEASEDDQKRSEAEIQKITDKHIAEVDTLVAAKEQDIM 184 >gi|269101942|ref|ZP_06154639.1| ribosome recycling factor [Photobacterium damselae subsp. damselae CIP 102761] gi|268161840|gb|EEZ40336.1| ribosome recycling factor [Photobacterium damselae subsp. damselae CIP 102761] Length = 185 Score = 163 bits (413), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 81/179 (45%), Positives = 119/179 (66%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ K RM ++ LK + +RTGR PS+LD + VE YG++ PLNQVANV + R L Sbjct: 7 QDAKTRMEKSVDALKSQLAKVRTGRAHPSLLDTIYVEYYGANTPLNQVANVVAEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+E+ VE+ I S+LGLNP+ G V+R+P+P TEERR LVK+ A AE+ ++ Sbjct: 67 ITVFDRELAPKVEKAIMMSDLGLNPMSAGTVIRVPLPALTEERRRDLVKIVRAEAEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD ++K K + SED +++IQK+TD IK+I++ E K+KE+M Sbjct: 127 AVRNIRRDANANVKALLKDKEISEDDDRRAQDEIQKLTDDAIKSIEAVLEVKEKELMEV 185 >gi|114777897|ref|ZP_01452811.1| Ribosome recycling factor [Mariprofundus ferrooxydans PV-1] gi|114551684|gb|EAU54236.1| Ribosome recycling factor [Mariprofundus ferrooxydans PV-1] Length = 181 Score = 163 bits (413), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 77/175 (44%), Positives = 119/175 (68%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 +++RM ++ L+ ++ T+RTGR + ++LD V V YGS VP NQV N++V EPR+L+++ Sbjct: 5 LEERMKKSVVALRSELATIRTGRANAALLDQVTVSYYGSEVPFNQVGNISVPEPRILMIT 64 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 W+K ++ +E+ I +S+LGLNP +G+V+RI +PE TE+RR LVK A EK+++S+ Sbjct: 65 PWEKSIIGDIEKAILKSDLGLNPTSDGEVVRIMLPELTEDRRKELVKKARTIGEKARVSI 124 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RNIRRD D +KK K ED L++ IQKITD I +D E K+++I+ Sbjct: 125 RNIRRDANDEVKKQAKDDNLPEDESKRLQDRIQKITDKYIAEVDQVIEHKEQDIL 179 >gi|308270379|emb|CBX26991.1| Ribosome-recycling factor [uncultured Desulfobacterium sp.] Length = 191 Score = 163 bits (413), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 81/187 (43%), Positives = 125/187 (66%), Gaps = 2/187 (1%) Query: 2 NQVIDL--QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVT 59 N +I+L Q +++ MG +I+ L+ ++ +RTGR S S+LD ++V+ YG+ PLNQ+A+++ Sbjct: 5 NPMIELLFQEVRENMGKSIAALQNELKRVRTGRASLSILDGIRVDYYGTLTPLNQIASLS 64 Query: 60 VLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 V E R++ V WD + +E+ I +S+LGL P +G+++RI +P TE+RR LVKV H Sbjct: 65 VPESRLITVQPWDVSAIKEIEKAILKSDLGLTPSSDGKIIRISIPPLTEDRRKKLVKVVH 124 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 E KI+VRNIRRD + +K +K G +ED ++ IQKITD IK ID ++EK Sbjct: 125 KMCEDYKIAVRNIRRDSNESIKGFKKDGDLAEDAAFKAQDSIQKITDEHIKLIDGIYKEK 184 Query: 180 KKEIMHF 186 +KEI+ F Sbjct: 185 EKEILEF 191 >gi|224476382|ref|YP_002633988.1| ribosome recycling factor [Staphylococcus carnosus subsp. carnosus TM300] gi|254809530|sp|B9DPH1|RRF_STACT RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|222420989|emb|CAL27803.1| putative ribosome recycling factor [Staphylococcus carnosus subsp. carnosus TM300] Length = 184 Score = 163 bits (413), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 82/180 (45%), Positives = 119/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + RM +I L +++ T+ GR + ++L VKV+ YG+ P+ Q+A++ V EPR+L Sbjct: 5 LSETRSRMKKSIESLSRELATINAGRANSNLLAGVKVDYYGAPTPVQQLASINVPEPRLL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VVS +DK ++ +ER I+ +NLG+NP +G+V+RI VP TEERR LVK E +K Sbjct: 65 VVSPYDKTSLSDIERAINAANLGVNPSSDGEVIRIMVPALTEERRKELVKDVKKMGENAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+RNIRRD D LKK K G SED + + +D+QKITD +IK +D EEK+K+IM Sbjct: 125 VSIRNIRRDSNDDLKKDEKEGVISEDELRTGTDDVQKITDESIKEVDKVLEEKEKDIMSV 184 >gi|257084575|ref|ZP_05578936.1| ribosome recycling factor [Enterococcus faecalis Fly1] gi|307287723|ref|ZP_07567766.1| ribosome recycling factor [Enterococcus faecalis TX0109] gi|256992605|gb|EEU79907.1| ribosome recycling factor [Enterococcus faecalis Fly1] gi|306501461|gb|EFM70764.1| ribosome recycling factor [Enterococcus faecalis TX0109] gi|315164822|gb|EFU08839.1| ribosome recycling factor [Enterococcus faecalis TX1302] Length = 185 Score = 163 bits (413), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 75/179 (41%), Positives = 124/179 (69%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K++M L++++ +R GR + S+LD ++VE YG+ P+NQ+A++ + E R+L Sbjct: 6 LATAKEKMTKAEESLRRELGQIRAGRANASLLDRIQVEYYGAPTPVNQLASINIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK +A +E+ I S++G++P +G V+R+ +P+ TEERR L K AE SK Sbjct: 66 MITPFDKNSIADIEKAIQMSDIGISPTNDGNVIRLVIPQLTEERRKELAKDVKKEAENSK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 I+VRN+RRD MD LKK++K+G +ED + S E D+QK+TD +IKNID+ EK++E++ Sbjct: 126 IAVRNVRRDAMDELKKAQKNGDITEDELRSFEKDVQKLTDDSIKNIDAITAEKEQELLE 184 >gi|168188136|ref|ZP_02622771.1| ribosome recycling factor [Clostridium botulinum C str. Eklund] gi|169294032|gb|EDS76165.1| ribosome recycling factor [Clostridium botulinum C str. Eklund] Length = 185 Score = 163 bits (412), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 81/180 (45%), Positives = 121/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L N +++M +IS LKKD+ +++ G+ +P+MLD V VE YGS P+NQ+ANV+ EPR+L Sbjct: 6 LNNSQEKMLKSISVLKKDLGSMKAGKANPAMLDRVNVEYYGSETPINQLANVSSPEPRVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WDK + +ER I +S+LGLNP +G V+R+ +PE TEE R +VK E+SK Sbjct: 66 LIQPWDKNSLKDIERAILQSDLGLNPSNDGSVIRLIIPELTEETRKDIVKKVKKVGEESK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++R+IRR+G D +K +K+ +ED EN +QKITD I ID+ + K+KE+M Sbjct: 126 IAIRSIRREGNDKIKNLKKNNDITEDEAKEGENSVQKITDKYITEIDNIIDAKEKEVMSV 185 >gi|253681713|ref|ZP_04862510.1| ribosome recycling factor [Clostridium botulinum D str. 1873] gi|253561425|gb|EES90877.1| ribosome recycling factor [Clostridium botulinum D str. 1873] Length = 185 Score = 163 bits (412), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 79/178 (44%), Positives = 119/178 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K++M +IS LKK++ +++ G+ +PSMLD +KVE YGS P+NQ+ANV+ EPR+L Sbjct: 6 LNKSKEKMDKSISVLKKELSSMKAGKANPSMLDKIKVEYYGSETPINQLANVSSPEPRVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WDK + +ER I +S+LGLNP +G V+R+ VPE TEE R +VK E++K Sbjct: 66 LIQPWDKNSLKDIERAILQSDLGLNPSNDGSVIRLIVPELTEETRKEIVKKVKKMGEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++R+IRRD D +K +K + +ED E+ +QKITD IK ID K+K++M Sbjct: 126 VAIRSIRRDANDKIKNLKKDNEITEDEAKEGEDSVQKITDKAIKEIDEVISLKEKDVM 183 >gi|212710394|ref|ZP_03318522.1| hypothetical protein PROVALCAL_01454 [Providencia alcalifaciens DSM 30120] gi|212686976|gb|EEB46504.1| hypothetical protein PROVALCAL_01454 [Providencia alcalifaciens DSM 30120] Length = 185 Score = 163 bits (412), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 81/179 (45%), Positives = 117/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ +DRM ++ LK + +RTGR SPS+LD + VE YGS PL Q+ANVTV + R L Sbjct: 7 KDAQDRMEKSLESLKSQISKVRTGRASPSLLDGITVEYYGSATPLRQLANVTVEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +SV+D+ M ++E+ I S+LGLNP G V+R+P+P TEERR L+KV AE+ +I Sbjct: 67 ISVFDRSMSPAIEKAIMASDLGLNPSSAGTVIRVPLPPLTEERRKDLIKVVRGDAEQGRI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD D +K K + SED ++DIQK+TD IK +D +K+ E+M F Sbjct: 127 AIRNVRRDANDKVKALLKDKEISEDDERRSQDDIQKLTDHFIKKVDEALAQKEAELMEF 185 >gi|24215994|ref|NP_713475.1| ribosome recycling factor [Leptospira interrogans serovar Lai str. 56601] gi|45656744|ref|YP_000830.1| ribosome recycling factor [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|34924967|sp|Q8F143|RRF_LEPIN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|59798561|sp|Q72U11|RRF_LEPIC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|24197218|gb|AAN50493.1|AE011490_8 ribosome recycling factor [Leptospira interrogans serovar Lai str. 56601] gi|45599980|gb|AAS69467.1| ribosome recycling factor [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 184 Score = 163 bits (412), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 80/177 (45%), Positives = 121/177 (68%), Gaps = 2/177 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + +K +M TI +KKD T+RTGR +PS+++ ++V+ YG+ P+NQ+ N++V EPRML Sbjct: 7 ISGMKTKMDKTIDLVKKDFGTIRTGRANPSLVEDIRVDYYGNQTPINQLGNISVPEPRML 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+S +DK ++ +E+ I S LGL P +G V+RI +PE T ERR L KV + +E+ K Sbjct: 67 VISPYDKGIMKDIEKAIQTSGLGLQPTNDGVVIRIVIPELTGERRKELAKVVKSKSEEKK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +++RNIRRD M+ LKK + S+D + S+++ IQKITDS I I + EK+KEI Sbjct: 127 VAIRNIRRDAMEDLKKHTEG--MSQDEIKSVQDQIQKITDSYIDKISALTAEKEKEI 181 >gi|271499498|ref|YP_003332523.1| ribosome recycling factor [Dickeya dadantii Ech586] gi|270343053|gb|ACZ75818.1| ribosome recycling factor [Dickeya dadantii Ech586] Length = 185 Score = 163 bits (412), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 80/174 (45%), Positives = 112/174 (64%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM + K + +RTGR SP++LD + VE YGS PL Q+AN+ V + R L V+V+D Sbjct: 12 RMDKCVEAFKNQISKVRTGRASPTLLDGIHVEYYGSATPLRQLANIVVEDSRTLAVTVFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + + +VE+ I S+LGLNP+ G V+R+P+P TEERR L+KV AE+ ++SVRN+ Sbjct: 72 RTLGPAVEKAIMASDLGLNPMSAGTVIRVPLPPLTEERRKDLIKVVRGEAEQGRVSVRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD D LK K SED ++D+QK+TD IK ID+ EK+KE+M F Sbjct: 132 RRDANDKLKAQLKDKTISEDEERRAQDDVQKLTDGFIKKIDAALAEKEKELMDF 185 >gi|317129173|ref|YP_004095455.1| ribosome recycling factor [Bacillus cellulosilyticus DSM 2522] gi|315474121|gb|ADU30724.1| ribosome recycling factor [Bacillus cellulosilyticus DSM 2522] Length = 185 Score = 163 bits (412), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 76/173 (43%), Positives = 119/173 (68%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M ++ +K++ T+R GR +PS+LD V+VE YG PLNQ+A++ V E RML + +D Sbjct: 12 KMSKSVEAFRKELATIRAGRANPSLLDKVQVEYYGMMTPLNQLASIAVPEARMLTIQPFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K + +ER I +++LGL+P +G ++RI +P TEERR LVK+ Y+E++K++VRNI Sbjct: 72 KSSLQDIERAIQKADLGLSPTNDGNIIRIAIPALTEERRKELVKLVGRYSEEAKVAVRNI 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 RRD D LKK K G+ +ED + ++++QK+TD IK+ID + K++EIM Sbjct: 132 RRDANDELKKLEKDGELTEDDLRWNQDEVQKLTDGVIKDIDEIAKSKEQEIME 184 >gi|157825336|ref|YP_001493056.1| ribosome recycling factor [Rickettsia akari str. Hartford] gi|166231216|sp|A8GMC3|RRF_RICAH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|157799294|gb|ABV74548.1| ribosome releasing factor [Rickettsia akari str. Hartford] Length = 186 Score = 163 bits (412), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 81/175 (46%), Positives = 120/175 (68%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 ++++M + L ++ LRTGR S ++LD V VEAYGS + L+QVA+++ + R + V Sbjct: 10 LQEKMDKALKVLDHELKGLRTGRASVNLLDSVTVEAYGSKMLLSQVASLSTPDARTINVQ 69 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 VWDK MV+SVE+GI +NLGL P +GQ++R+P+P TEERR LVK+AH Y E +KIS+ Sbjct: 70 VWDKSMVSSVEKGITIANLGLTPATDGQLIRLPIPALTEERRKELVKLAHKYGEDAKISL 129 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RNIRRDG + LKK K ++D +L +QK+TD +DS ++K+++IM Sbjct: 130 RNIRRDGNEELKKLEKDNIIAKDEHHNLSEQVQKLTDEYSSKVDSAIKQKEQDIM 184 >gi|258645593|ref|ZP_05733062.1| ribosome recycling factor [Dialister invisus DSM 15470] gi|260402951|gb|EEW96498.1| ribosome recycling factor [Dialister invisus DSM 15470] Length = 185 Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 79/179 (44%), Positives = 129/179 (72%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 +L+++ ++M +I L+ + ++RTG+ SPS+LD V V+ YGS P+ QVA+VTV E RM Sbjct: 5 ELKHLSEKMDKSIQALRNEFTSIRTGQASPSLLDRVFVDYYGSKTPVTQVASVTVPEARM 64 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 LVV WDK ++ +E+ I+ S+LGL P+ +G ++R+ +P+ TE+RR LVKV + AE++ Sbjct: 65 LVVQPWDKGILKDIEKAINMSDLGLVPMNDGNLIRMAIPQLTEQRRKDLVKVVNKKAEEA 124 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 K+++RNIRRDG LKK K+ S+D++ +E+ IQK+TD IK++++ ++K KEI+ Sbjct: 125 KVAIRNIRRDGNVFLKKEEKNSDISKDVIKDMEDKIQKLTDQKIKDLEAVTDKKVKEIL 183 >gi|221066088|ref|ZP_03542193.1| ribosome recycling factor [Comamonas testosteroni KF-1] gi|220711111|gb|EED66479.1| ribosome recycling factor [Comamonas testosteroni KF-1] Length = 186 Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 80/177 (45%), Positives = 118/177 (66%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N + +MG +I LK ++ +RTGR +P++LD + VE YGS VPL+QVANV++L+ R + Sbjct: 8 KNTETKMGQSIEALKNNLARVRTGRANPALLDAIHVEYYGSMVPLSQVANVSLLDSRTIS 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K M A VE+ I ES+LGLNP G ++R+P+P +EERR + K+A E KI Sbjct: 68 VQPWEKNMAAKVEKAIRESDLGLNPASMGDLIRVPMPPMSEERRKEMTKLARNEGENGKI 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++RN+RRD + +KK K +ASED E +IQKITD I +D+ K+++IM Sbjct: 128 AIRNLRRDANESVKKLVKDKEASEDDQKRSEAEIQKITDKHIAEVDTLVAAKEQDIM 184 >gi|253988128|ref|YP_003039484.1| ribosome recycling factor [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779578|emb|CAQ82739.1| ribosome recycling factor (ribosome-releasing factor) (rrf) [Photorhabdus asymbiotica] Length = 185 Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 78/179 (43%), Positives = 118/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ +DRM ++ LK + +RTGR SPS+LD + VE YG+ PL Q+ANVT + R L Sbjct: 7 KDAQDRMEKSVEALKNQISKVRTGRASPSLLDGITVEYYGAPTPLRQIANVTAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ M ++E+ I S+LGLNP G ++R+P+P TEERR L+KV AE+ ++ Sbjct: 67 ITVFDRSMTPAIEKAIMSSDLGLNPSSAGTIIRVPLPPLTEERRKDLIKVVRGEAEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRNIRRD D +K K + SED +++IQK+TD+ IK +D +K++E+M F Sbjct: 127 SVRNIRRDANDKIKALLKDKEISEDDERRAQDEIQKLTDNFIKKVDEALAKKEEELMEF 185 >gi|253581352|ref|ZP_04858578.1| ribosome recycling factor [Fusobacterium varium ATCC 27725] gi|251836716|gb|EES65250.1| ribosome recycling factor [Fusobacterium varium ATCC 27725] Length = 188 Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 88/182 (48%), Positives = 120/182 (65%), Gaps = 4/182 (2%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 V+ L N ++MG I K ++R GR S SMLD V+VE YGS +PLNQV +V+ E Sbjct: 6 VVKLCN--EKMGKAIEATKHKFTSIRAGRASVSMLDSVRVEQYGSEMPLNQVGSVSAPEA 63 Query: 64 RMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAE 123 R+LV+ WDK +++ +E+ I +NLGL P +G+V+R+ +PE T ERR VK+A AE Sbjct: 64 RLLVIDPWDKSLISKIEKAIMAANLGLTPNNDGKVIRLVMPELTAERRKEYVKMAKTEAE 123 Query: 124 KSKISVRNIRRDGMDHLKK--SRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 K++VRNIR+DG + LKK K SED V +LE +IQKITD+ IK ID F +K+K Sbjct: 124 NGKVAVRNIRKDGNNDLKKLSKDKENPISEDEVKTLEAEIQKITDAHIKVIDDLFAKKEK 183 Query: 182 EI 183 EI Sbjct: 184 EI 185 >gi|212636274|ref|YP_002312799.1| ribosome recycling factor [Shewanella piezotolerans WP3] gi|226703268|sp|B8CQ82|RRF_SHEPW RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|212557758|gb|ACJ30212.1| Ribosome recycling factor [Shewanella piezotolerans WP3] Length = 185 Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 81/174 (46%), Positives = 112/174 (64%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM + K M +RTGR PS+LD ++V YGS PL QVA+V++ + R L VSV+D Sbjct: 12 RMDKCVESTKTQMAKVRTGRAHPSLLDTIQVPYYGSLTPLKQVASVSIGDARTLNVSVFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + M+A+VE+ I S+LGLNP+ G +RIP+P TEERR L+KV A AE +I+VRN+ Sbjct: 72 RTMIAAVEKAIMSSDLGLNPMSAGATIRIPLPALTEERRKDLIKVVRAEAENGRIAVRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD +K K + +ED V E+++QK TD+ IK ID K+KE+M F Sbjct: 132 RRDANSDVKALEKEKECTEDDVRRTEDEVQKFTDAHIKKIDEILAAKEKELMEF 185 >gi|331269638|ref|YP_004396130.1| ribosome recycling factor [Clostridium botulinum BKT015925] gi|329126188|gb|AEB76133.1| ribosome recycling factor [Clostridium botulinum BKT015925] Length = 185 Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 77/180 (42%), Positives = 118/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M TIS LKK++ +++ G+ +P+MLD +KVE YGS P+NQ+ANV+ EPR+L Sbjct: 6 LNKSQEKMDKTISVLKKELSSMKAGKANPAMLDKIKVEYYGSETPINQLANVSSPEPRVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WDK + +ER I +S+LGLNP +G V+R+ VPE TEE R +VK E++K Sbjct: 66 LIQPWDKNSLKDIERAILQSDLGLNPSNDGSVIRLIVPELTEETRKEIVKKVKKMGEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++R+IRRD D +K +K + +ED E+ +QKITD IK ID K+ ++M Sbjct: 126 VAIRSIRRDANDKIKNLKKDNEVTEDEAKEGEDSVQKITDKAIKQIDEVISSKENDVMSI 185 >gi|24373200|ref|NP_717243.1| ribosome recycling factor [Shewanella oneidensis MR-1] gi|34924965|sp|Q8EGH2|RRF_SHEON RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|24347421|gb|AAN54687.1|AE015609_6 ribosome recycling factor [Shewanella oneidensis MR-1] Length = 185 Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 77/178 (43%), Positives = 115/178 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RMG + K M +RTGR PS+LD ++V YG+ PLNQVANV V + R L Sbjct: 7 KDAQERMGKCVDATKNQMAKVRTGRAHPSLLDSIQVSYYGTMTPLNQVANVGVEDARTLS 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+V+D+ + +VE+ I S+LGLNP+ G LRIP+P TEERR +KV A AE ++ Sbjct: 67 VTVFDRSAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVVRAEAEGGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++RN+RRD + +KK K+ + +ED V E+++QK TD+ IK +D K+ E+M Sbjct: 127 AIRNVRRDAISDVKKLEKAKECTEDDVRRFEDEVQKFTDAHIKKVDEILAAKEIELME 184 >gi|29376892|ref|NP_816046.1| ribosome recycling factor [Enterococcus faecalis V583] gi|227519884|ref|ZP_03949933.1| ribosome recycling factor [Enterococcus faecalis TX0104] gi|227553929|ref|ZP_03983976.1| ribosome recycling factor [Enterococcus faecalis HH22] gi|229549430|ref|ZP_04438155.1| ribosome recycling factor [Enterococcus faecalis ATCC 29200] gi|255972134|ref|ZP_05422720.1| ribosome recycling factor [Enterococcus faecalis T1] gi|255975201|ref|ZP_05425787.1| ribosome recycling factor [Enterococcus faecalis T2] gi|256617047|ref|ZP_05473893.1| ribosome recycling factor [Enterococcus faecalis ATCC 4200] gi|256763091|ref|ZP_05503671.1| ribosome recycling factor [Enterococcus faecalis T3] gi|256853758|ref|ZP_05559123.1| ribosome recycling factor [Enterococcus faecalis T8] gi|256956675|ref|ZP_05560846.1| ribosome recycling factor [Enterococcus faecalis DS5] gi|256961308|ref|ZP_05565479.1| ribosome recycling factor [Enterococcus faecalis Merz96] gi|256963564|ref|ZP_05567735.1| ribosome recycling factor [Enterococcus faecalis HIP11704] gi|257079630|ref|ZP_05573991.1| ribosome recycling factor [Enterococcus faecalis JH1] gi|257087429|ref|ZP_05581790.1| ribosome recycling factor [Enterococcus faecalis D6] gi|257090589|ref|ZP_05584950.1| ribosome recycling factor [Enterococcus faecalis CH188] gi|257416636|ref|ZP_05593630.1| ribosome recycling factor [Enterococcus faecalis AR01/DG] gi|257419852|ref|ZP_05596846.1| ribosome recycling factor [Enterococcus faecalis T11] gi|257421959|ref|ZP_05598949.1| ribosome recycling factor [Enterococcus faecalis X98] gi|293383593|ref|ZP_06629503.1| ribosome recycling factor [Enterococcus faecalis R712] gi|293387294|ref|ZP_06631851.1| ribosome recycling factor [Enterococcus faecalis S613] gi|294780910|ref|ZP_06746264.1| ribosome recycling factor [Enterococcus faecalis PC1.1] gi|300861008|ref|ZP_07107095.1| ribosome recycling factor [Enterococcus faecalis TUSoD Ef11] gi|307270847|ref|ZP_07552134.1| ribosome recycling factor [Enterococcus faecalis TX4248] gi|307271503|ref|ZP_07552775.1| ribosome recycling factor [Enterococcus faecalis TX0855] gi|307277169|ref|ZP_07558273.1| ribosome recycling factor [Enterococcus faecalis TX2134] gi|307285820|ref|ZP_07565954.1| ribosome recycling factor [Enterococcus faecalis TX0860] gi|307290551|ref|ZP_07570463.1| ribosome recycling factor [Enterococcus faecalis TX0411] gi|312899827|ref|ZP_07759146.1| ribosome recycling factor [Enterococcus faecalis TX0470] gi|312905119|ref|ZP_07764240.1| ribosome recycling factor [Enterococcus faecalis TX0635] gi|312906143|ref|ZP_07765155.1| ribosome recycling factor [Enterococcus faecalis DAPTO 512] gi|312909488|ref|ZP_07768343.1| ribosome recycling factor [Enterococcus faecalis DAPTO 516] gi|312953477|ref|ZP_07772317.1| ribosome recycling factor [Enterococcus faecalis TX0102] gi|34924912|sp|Q831V2|RRF_ENTFA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|29344357|gb|AAO82116.1| ribosome recycling factor [Enterococcus faecalis V583] gi|227072678|gb|EEI10641.1| ribosome recycling factor [Enterococcus faecalis TX0104] gi|227176915|gb|EEI57887.1| ribosome recycling factor [Enterococcus faecalis HH22] gi|229305667|gb|EEN71663.1| ribosome recycling factor [Enterococcus faecalis ATCC 29200] gi|255963152|gb|EET95628.1| ribosome recycling factor [Enterococcus faecalis T1] gi|255968073|gb|EET98695.1| ribosome recycling factor [Enterococcus faecalis T2] gi|256596574|gb|EEU15750.1| ribosome recycling factor [Enterococcus faecalis ATCC 4200] gi|256684342|gb|EEU24037.1| ribosome recycling factor [Enterococcus faecalis T3] gi|256710701|gb|EEU25744.1| ribosome recycling factor [Enterococcus faecalis T8] gi|256947171|gb|EEU63803.1| ribosome recycling factor [Enterococcus faecalis DS5] gi|256951804|gb|EEU68436.1| ribosome recycling factor [Enterococcus faecalis Merz96] gi|256954060|gb|EEU70692.1| ribosome recycling factor [Enterococcus faecalis HIP11704] gi|256987660|gb|EEU74962.1| ribosome recycling factor [Enterococcus faecalis JH1] gi|256995459|gb|EEU82761.1| ribosome recycling factor [Enterococcus faecalis D6] gi|256999401|gb|EEU85921.1| ribosome recycling factor [Enterococcus faecalis CH188] gi|257158464|gb|EEU88424.1| ribosome recycling factor [Enterococcus faecalis ARO1/DG] gi|257161680|gb|EEU91640.1| ribosome recycling factor [Enterococcus faecalis T11] gi|257163783|gb|EEU93743.1| ribosome recycling factor [Enterococcus faecalis X98] gi|291079105|gb|EFE16469.1| ribosome recycling factor [Enterococcus faecalis R712] gi|291083331|gb|EFE20294.1| ribosome recycling factor [Enterococcus faecalis S613] gi|294452036|gb|EFG20484.1| ribosome recycling factor [Enterococcus faecalis PC1.1] gi|295113452|emb|CBL32089.1| ribosome recycling factor [Enterococcus sp. 7L76] gi|300850047|gb|EFK77797.1| ribosome recycling factor [Enterococcus faecalis TUSoD Ef11] gi|306498406|gb|EFM67911.1| ribosome recycling factor [Enterococcus faecalis TX0411] gi|306502581|gb|EFM71848.1| ribosome recycling factor [Enterococcus faecalis TX0860] gi|306506099|gb|EFM75265.1| ribosome recycling factor [Enterococcus faecalis TX2134] gi|306511775|gb|EFM80773.1| ribosome recycling factor [Enterococcus faecalis TX0855] gi|306512760|gb|EFM81405.1| ribosome recycling factor [Enterococcus faecalis TX4248] gi|310627789|gb|EFQ11072.1| ribosome recycling factor [Enterococcus faecalis DAPTO 512] gi|310628686|gb|EFQ11969.1| ribosome recycling factor [Enterococcus faecalis TX0102] gi|310631509|gb|EFQ14792.1| ribosome recycling factor [Enterococcus faecalis TX0635] gi|311290161|gb|EFQ68717.1| ribosome recycling factor [Enterococcus faecalis DAPTO 516] gi|311293077|gb|EFQ71633.1| ribosome recycling factor [Enterococcus faecalis TX0470] gi|315025416|gb|EFT37348.1| ribosome recycling factor [Enterococcus faecalis TX2137] gi|315030225|gb|EFT42157.1| ribosome recycling factor [Enterococcus faecalis TX4000] gi|315032889|gb|EFT44821.1| ribosome recycling factor [Enterococcus faecalis TX0017] gi|315035626|gb|EFT47558.1| ribosome recycling factor [Enterococcus faecalis TX0027] gi|315146673|gb|EFT90689.1| ribosome recycling factor [Enterococcus faecalis TX4244] gi|315150163|gb|EFT94179.1| ribosome recycling factor [Enterococcus faecalis TX0012] gi|315152144|gb|EFT96160.1| ribosome recycling factor [Enterococcus faecalis TX0031] gi|315155331|gb|EFT99347.1| ribosome recycling factor [Enterococcus faecalis TX0043] gi|315159093|gb|EFU03110.1| ribosome recycling factor [Enterococcus faecalis TX0312] gi|315161686|gb|EFU05703.1| ribosome recycling factor [Enterococcus faecalis TX0645] gi|315166409|gb|EFU10426.1| ribosome recycling factor [Enterococcus faecalis TX1341] gi|315170306|gb|EFU14323.1| ribosome recycling factor [Enterococcus faecalis TX1342] gi|315173660|gb|EFU17677.1| ribosome recycling factor [Enterococcus faecalis TX1346] gi|315574370|gb|EFU86561.1| ribosome recycling factor [Enterococcus faecalis TX0309B] gi|315579052|gb|EFU91243.1| ribosome recycling factor [Enterococcus faecalis TX0630] gi|315580155|gb|EFU92346.1| ribosome recycling factor [Enterococcus faecalis TX0309A] gi|323481387|gb|ADX80826.1| ribosome recycling factor [Enterococcus faecalis 62] gi|327535683|gb|AEA94517.1| ribosome recycling factor [Enterococcus faecalis OG1RF] gi|329572247|gb|EGG53907.1| ribosome recycling factor [Enterococcus faecalis TX1467] Length = 185 Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 74/179 (41%), Positives = 124/179 (69%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K++M L++++ +R GR + S+LD ++VE YG+ P+NQ+A++ + E R+L Sbjct: 6 LATAKEKMTKAEESLRRELGQIRAGRANASLLDRIQVEYYGAPTPVNQLASINIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK +A +E+ I S++G++P +G V+R+ +P+ TEERR L K AE SK Sbjct: 66 MITPFDKNSIADIEKAIQMSDIGISPTNDGNVIRLVIPQLTEERRKELAKDVKKEAENSK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRN+RRD MD LKK++K+G +ED + S E D+QK+TD +IKNID+ EK++E++ Sbjct: 126 VAVRNVRRDAMDELKKAQKNGDITEDELRSFEKDVQKLTDDSIKNIDAITAEKEQELLE 184 >gi|330830752|ref|YP_004393704.1| ribosome-recycling factor [Aeromonas veronii B565] gi|328805888|gb|AEB51087.1| Ribosome-recycling factor [Aeromonas veronii B565] Length = 185 Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 82/178 (46%), Positives = 114/178 (64%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 + KDRMG ++ LK M +RTGR PS+LD ++VE YG+ PL Q+ANV + R L + Sbjct: 8 DAKDRMGKSVEALKTQMSKIRTGRAHPSLLDGIQVEYYGAATPLKQLANVVAEDARTLSI 67 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 S++D+ M+ +VE+ I S+LGLNP GQ LR+P+P TEERR L K+ A AE ++++ Sbjct: 68 SIFDRSMIQAVEKAILTSDLGLNPSSNGQTLRVPLPPLTEERRRDLTKIVRAEAENARVA 127 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 VRNIRRD LK K + SED + +IQK+TDS IK +D K+KE+M Sbjct: 128 VRNIRRDANADLKALLKDKEISEDDDRRAQEEIQKLTDSYIKLVDEALAVKEKELMEI 185 >gi|117921253|ref|YP_870445.1| ribosome recycling factor [Shewanella sp. ANA-3] gi|166231228|sp|A0KZ20|RRF_SHESA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|117613585|gb|ABK49039.1| ribosome recycling factor [Shewanella sp. ANA-3] Length = 185 Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 76/178 (42%), Positives = 115/178 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RMG + K M +RTGR PS+LD ++V YG+ PLNQVANV + + R L Sbjct: 7 KDAQERMGKCVEATKNQMAKVRTGRAHPSLLDSIQVSYYGTMTPLNQVANVGIEDARTLS 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+V+D+ + +VE+ I S+LGLNP+ G LRIP+P TEERR +KV A AE ++ Sbjct: 67 VTVFDRSAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVVRAEAEGGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++RN+RRD + +KK K+ + +ED V E+++QK TD+ IK +D K+ E+M Sbjct: 127 AIRNVRRDAISEVKKLEKAKECTEDDVRRFEDEVQKFTDAHIKKVDEILAAKEIELME 184 >gi|254360757|ref|ZP_04976905.1| peptide chain release factor RF4 [Mannheimia haemolytica PHL213] gi|261491693|ref|ZP_05988274.1| peptide chain release factor RF4 [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261494456|ref|ZP_05990942.1| peptide chain release factor RF4 [Mannheimia haemolytica serotype A2 str. OVINE] gi|153091327|gb|EDN73301.1| peptide chain release factor RF4 [Mannheimia haemolytica PHL213] gi|261309840|gb|EEY11057.1| peptide chain release factor RF4 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261312646|gb|EEY13768.1| peptide chain release factor RF4 [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 185 Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 79/179 (44%), Positives = 116/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ +DRM ++ LK + +RTGR PS+LD ++VE YGS PL QVANV + R L Sbjct: 7 KDTQDRMEKSLEALKGHIAKIRTGRAQPSLLDGIQVEYYGSATPLRQVANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+V+DK ++++VE+ I S+LGLNP G +R+P+P TEERR L+K+ A E+ K+ Sbjct: 67 VNVFDKSLISAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIVKAEGEQGKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD D +K K + SE+ E DIQKITD+ IK +D K+KE++ F Sbjct: 127 AIRNVRRDANDQIKALLKDKEISENEQHKAEEDIQKITDTFIKKVDEVLAAKEKELLDF 185 >gi|237785749|ref|YP_002906454.1| ribosome recycling factor [Corynebacterium kroppenstedtii DSM 44385] gi|259494536|sp|C4LJA6|RRF_CORK4 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|237758661|gb|ACR17911.1| Ribosome recycling factor [Corynebacterium kroppenstedtii DSM 44385] Length = 185 Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 72/175 (41%), Positives = 119/175 (68%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 ++RM ++ + ++D+ T+RTGR +PSM + V+ E YG P+ Q+A ++V EPRML++ Sbjct: 10 EERMTQSVEYAREDLTTIRTGRANPSMFNGVQAEYYGVMTPITQMATISVPEPRMLLIKP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 ++ ++ ++E I S+LG+NP +GQVLR+ VP+ TEERR +V++A + E ++I++R Sbjct: 70 YEPSIMNAIENAIRNSDLGVNPTNDGQVLRVTVPQLTEERRKEMVRLAKSKGEDARIAIR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 NIRR GMD LK+ +K G+A ED V + E ++ K T + +D E K+KE+M Sbjct: 130 NIRRKGMDELKRIQKDGEAGEDEVQAAEKELDKTTHEYVSQVDKLIEAKEKELME 184 >gi|227326540|ref|ZP_03830564.1| ribosome recycling factor [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 185 Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 82/174 (47%), Positives = 111/174 (63%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM + K + +RTGR SPS+LD ++VE YGS PL QVANV V + R L +SV+D Sbjct: 12 RMDKCVEAFKNQISKIRTGRASPSILDGIQVEYYGSATPLRQVANVVVEDSRTLAISVFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + + +VE+ I S+LGLNP G V+R+P+P TEERR L+KV AE+ +ISVRN+ Sbjct: 72 RSLGPAVEKAIMASDLGLNPSSAGTVIRVPLPPLTEERRKDLIKVVRGEAEQGRISVRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD D LK K SED ++D+QK+TD+ IK +D EK+ E+M F Sbjct: 132 RRDANDKLKALLKDKAISEDEERRAQDDVQKLTDNFIKKVDVALAEKEAELMEF 185 >gi|268315588|ref|YP_003289307.1| ribosome recycling factor [Rhodothermus marinus DSM 4252] gi|262333122|gb|ACY46919.1| ribosome recycling factor [Rhodothermus marinus DSM 4252] Length = 192 Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 70/178 (39%), Positives = 121/178 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + ++ M +++ L+ ++ LR GR +P+ML+ V+VE YG+ PL Q+A++T +P +L Sbjct: 13 LDDAREHMEKSLAHLRTELAALRAGRATPAMLEDVRVEYYGTMTPLMQLASITAPQPDLL 72 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V WD+ + ++ER I +NLGLNP +G ++RIP+P +EERR LV+ A AE+++ Sbjct: 73 IVQPWDRSALGAIERAIINANLGLNPSNDGNIIRIPIPPLSEERRKELVRAARIRAEEAR 132 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++RNIRR DH+KK+++ ED+ + E ++QK+TD+ I+ ++ E K+ EIM Sbjct: 133 VAIRNIRRHAKDHIKKAKEEEHLPEDLCHAAEEELQKLTDTYIEKVNQLLERKEAEIM 190 >gi|332296167|ref|YP_004438090.1| Ribosome-recycling factor [Thermodesulfobium narugense DSM 14796] gi|332179270|gb|AEE14959.1| Ribosome-recycling factor [Thermodesulfobium narugense DSM 14796] Length = 185 Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 79/180 (43%), Positives = 126/180 (70%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 ++++++ RM + L K+ ++RTGR SP++LD VKV+ YG+ VP+ Q+ANV+ + R Sbjct: 5 EIEHLRQRMSKAVDNLSKEFASVRTGRASPALLDHVKVDYYGTTVPIKQLANVSQQDART 64 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 L+++V+DK + +V++ I S+LGL P V+G VLRI +P T+ERR LVKV AE++ Sbjct: 65 LLINVYDKNALQAVDKAIRLSDLGLTPQVDGMVLRIVIPTLTQERRKELVKVVKKMAEEA 124 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +++VRNIRRD ++ L+K K+ + SED + +N+ QKITDS I+ ID K+KEI++ Sbjct: 125 RVAVRNIRRDELEILEKRAKNKEISEDDLKRFKNEFQKITDSYIQEIDKLLSNKEKEILN 184 >gi|319441376|ref|ZP_07990532.1| ribosome recycling factor [Corynebacterium variabile DSM 44702] Length = 185 Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 77/179 (43%), Positives = 116/179 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +D M ++ +++D+ T+RTGR +P+M + V E YG P+ Q+A ++V EPRML Sbjct: 6 LLDAEDHMSRSVDHVREDLTTIRTGRANPAMFNRVFAEYYGMRTPITQMATISVPEPRML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ ++ ++ +E I S+LG+NP +GQVLR+ +P+ TEERR LVKVA E +K Sbjct: 66 IIKPYEMSVMQEIENAIRNSDLGVNPTNDGQVLRVTIPQLTEERRKDLVKVARGKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 IS+RNIRR GMD LKK +K G A ED V + E ++ KIT + +D K+KE+M Sbjct: 126 ISIRNIRRKGMDSLKKIQKDGDAGEDEVQAAEKELDKITQGYVAQVDEVVSSKEKELME 184 >gi|332530832|ref|ZP_08406758.1| ribosome recycling factor [Hylemonella gracilis ATCC 19624] gi|332039744|gb|EGI76144.1| ribosome recycling factor [Hylemonella gracilis ATCC 19624] Length = 187 Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 82/185 (44%), Positives = 120/185 (64%), Gaps = 1/185 (0%) Query: 1 MNQVIDLQ-NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVT 59 M + D++ N++ +M +I LK ++ +RTGR +P++LD V+VE YGS VPL+QVANV Sbjct: 1 MTTIADIKKNVEGKMDQSIEALKNNLSKIRTGRANPALLDAVQVEYYGSMVPLSQVANVA 60 Query: 60 VLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 +L+ R + V W+K M A +E+ I ES+LGLNP G ++R+P+P +EERR + K+ Sbjct: 61 LLDARTISVQPWEKGMGAKIEKAIRESDLGLNPASMGDLIRVPMPPMSEERRKEMTKLVR 120 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 E +KI+VRN+RRDG + +KK K ASED E DIQK TD + ID K Sbjct: 121 NEGEAAKIAVRNLRRDGNEAVKKLVKDKTASEDDQKRAEADIQKFTDKHVATIDQLVAAK 180 Query: 180 KKEIM 184 ++E+M Sbjct: 181 EQEVM 185 >gi|160900377|ref|YP_001565959.1| ribosome recycling factor [Delftia acidovorans SPH-1] gi|238687160|sp|A9BMM9|RRF_DELAS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|160365961|gb|ABX37574.1| ribosome recycling factor [Delftia acidovorans SPH-1] Length = 186 Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 81/172 (47%), Positives = 115/172 (66%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +MG +I LK ++ +RTGR +PS+LD + V+ YGS VPL+QVANV +L+ R + V W+ Sbjct: 13 KMGQSIEALKNNLARVRTGRANPSLLDSIHVDYYGSMVPLSQVANVNLLDARTISVQPWE 72 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K M A VE+ I ES+LGLNP G ++R+P+P +EERR + K+A E SKI+VRN+ Sbjct: 73 KSMSAKVEKAIRESDLGLNPASLGDLIRVPMPPMSEERRKEMTKLARNEGEASKIAVRNL 132 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD + +KK K +ASED E D+QK+TD I ID+ K+++IM Sbjct: 133 RRDANEAVKKLVKDKEASEDDQKRCEADVQKMTDKHITEIDALVAAKEQDIM 184 >gi|257082024|ref|ZP_05576385.1| ribosome recycling factor [Enterococcus faecalis E1Sol] gi|256990054|gb|EEU77356.1| ribosome recycling factor [Enterococcus faecalis E1Sol] Length = 185 Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 74/179 (41%), Positives = 124/179 (69%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K++M L++++ +R GR + S+LD ++VE YG+ P+NQ+A++ + E R+L Sbjct: 6 LATAKEKMTKAEEGLRRELGQIRAGRANASLLDRIQVEYYGAPTPVNQLASINIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK +A +E+ I S++G++P +G V+R+ +P+ TEERR L K AE SK Sbjct: 66 MITPFDKNSIADIEKAIQMSDIGISPTNDGNVIRLVIPQLTEERRKELAKDVKKEAENSK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRN+RRD MD LKK++K+G +ED + S E D+QK+TD +IKNID+ EK++E++ Sbjct: 126 VAVRNVRRDAMDELKKAQKNGDITEDELRSFEKDVQKLTDDSIKNIDAITAEKEQELLE 184 >gi|167759673|ref|ZP_02431800.1| hypothetical protein CLOSCI_02032 [Clostridium scindens ATCC 35704] gi|167662704|gb|EDS06834.1| hypothetical protein CLOSCI_02032 [Clostridium scindens ATCC 35704] Length = 183 Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 78/178 (43%), Positives = 119/178 (66%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 LQ +D+M T++ L+ D+ T+R GR +P++L+ + V+ YG+ P+ QV NV+V EPRM+ Sbjct: 5 LQVYEDKMKKTMASLESDLATIRAGRANPNVLNKIMVDYYGTPTPIQQVGNVSVPEPRMI 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ W+K MV ++E+ I S LG+NP +G +R+ PE TEERR LVK E +K Sbjct: 65 LIQPWEKSMVKAIEKAIQTSELGINPTNDGSAIRLVFPELTEERRKELVKDVKKKGEGAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++RNIRRDG D LKK + S + SED + +E ++QK+TD +K +D E K KE+M Sbjct: 125 VAIRNIRRDGNDALKKLKGS-EVSEDEIKDMEEELQKVTDKFVKKVDEAVEAKSKEVM 181 >gi|258516352|ref|YP_003192574.1| ribosome recycling factor [Desulfotomaculum acetoxidans DSM 771] gi|257780057|gb|ACV63951.1| ribosome recycling factor [Desulfotomaculum acetoxidans DSM 771] Length = 185 Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 80/179 (44%), Positives = 121/179 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ +D M T+ +KKD +LR GR +P +LD + V+ YG+ P+NQ+ANV+V E R+L Sbjct: 6 LEDAEDSMKKTVEVVKKDFASLRAGRATPGLLDKINVDYYGTPTPVNQLANVSVPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK ++ ++E+ I +S+LG+ P +G V+R+ VP+ TEERR LVKV AE+ + Sbjct: 66 VIQPWDKSVIPALEKAILKSDLGITPNSDGVVIRLAVPQLTEERRKDLVKVVKKKAEEGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRNIRRD D LK +K G +ED ++++QK+TD IK+ID K+KEIM Sbjct: 126 VAVRNIRRDANDLLKSEQKDGNITEDDSRRAQDEVQKLTDKYIKDIDQLMANKEKEIMQ 184 >gi|119774279|ref|YP_927019.1| ribosome recycling factor [Shewanella amazonensis SB2B] gi|166231223|sp|A1S4P3|RRF_SHEAM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|119766779|gb|ABL99349.1| ribosome recycling factor [Shewanella amazonensis SB2B] Length = 185 Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 79/178 (44%), Positives = 112/178 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ +DRMG + K M +RTGR PS+LD ++V YGS PL QV NVT+ + R L Sbjct: 7 KDAQDRMGKCVEATKAQMAKVRTGRAHPSLLDTIQVNYYGSMTPLKQVGNVTIEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+V+D+ + +VE+ I S+LGLNP+ G +RIP+P TEERR LVKV A AE+ ++ Sbjct: 67 VNVFDRSAIQAVEKAIMSSDLGLNPMSAGATIRIPLPPLTEERRRDLVKVVRAEAEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++RN+RRD K+ K + +ED V E ++QKITD IK ID K+ E+M Sbjct: 127 AIRNVRRDANSSFKQLEKEKECTEDDVRRSEEEVQKITDLHIKKIDELLAAKEAELME 184 >gi|113970973|ref|YP_734766.1| ribosome recycling factor [Shewanella sp. MR-4] gi|114048197|ref|YP_738747.1| ribosome recycling factor [Shewanella sp. MR-7] gi|123130244|sp|Q0HGV8|RRF_SHESM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|123131225|sp|Q0HT65|RRF_SHESR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|113885657|gb|ABI39709.1| ribosome recycling factor [Shewanella sp. MR-4] gi|113889639|gb|ABI43690.1| ribosome recycling factor [Shewanella sp. MR-7] Length = 185 Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 76/178 (42%), Positives = 115/178 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RMG + K M +RTGR PS+LD ++V YG+ PLNQVANV + + R L Sbjct: 7 KDAQERMGKCVEATKNQMAKVRTGRAHPSLLDSIQVSYYGTMTPLNQVANVGIEDARTLS 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+V+D+ + +VE+ I S+LGLNP+ G LRIP+P TEERR +KV A AE ++ Sbjct: 67 VTVFDRSAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVVRAEAEGGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++RN+RRD + +KK K+ + +ED V E+++QK TD+ IK +D K+ E+M Sbjct: 127 AIRNVRRDAISDVKKLEKAKECTEDDVRRFEDEVQKFTDAHIKKVDEILAAKEIELME 184 >gi|116620031|ref|YP_822187.1| ribosome recycling factor [Candidatus Solibacter usitatus Ellin6076] gi|116223193|gb|ABJ81902.1| ribosome recycling factor [Candidatus Solibacter usitatus Ellin6076] Length = 201 Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 79/178 (44%), Positives = 119/178 (66%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 N+K RM +S L+ +M ++RTGR + S+LD ++V+ YG+ PLNQVAN+ V EP ++ + Sbjct: 23 NLKTRMEKAVSDLQHEMASIRTGRATLSLLDHIRVDYYGTPTPLNQVANLHVPEPNLITI 82 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 WD + ++E+ I S+LGLNP +G+V+R+P+P TEERR LVK HA AE +++ Sbjct: 83 QPWDVSQIGTIEKSIRTSDLGLNPANDGKVIRLPIPPLTEERRKELVKKLHAAAEHHRVA 142 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 VRNIRRDG + +KK K K +ED ++IQK+TD + +D+ + K+KEIM Sbjct: 143 VRNIRRDGNEAVKKLSKDKKITEDDDKKAHDEIQKLTDLYMGKVDTAAKTKEKEIMEI 200 >gi|253687340|ref|YP_003016530.1| ribosome recycling factor [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259494550|sp|C6DAI6|RRF_PECCP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|251753918|gb|ACT11994.1| ribosome recycling factor [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 185 Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 80/174 (45%), Positives = 112/174 (64%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM + K + +RTGR SPS+LD ++VE YGS PL QVANV V + R L ++V+D Sbjct: 12 RMDKCVEAFKNQISKIRTGRASPSILDGIQVEYYGSATPLRQVANVVVEDSRTLAITVFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + + +VE+ I S+LGLNP G V+R+P+P TEERR L+KV AE+ ++SVRN+ Sbjct: 72 RTLGPAVEKAIMASDLGLNPSSAGTVIRVPLPPLTEERRKDLIKVVRGEAEQGRVSVRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD D LK K SED ++D+QK+TD+ IK +D+ EK+ E+M F Sbjct: 132 RRDANDKLKALLKDKAISEDEERRAQDDVQKLTDNFIKKVDTALAEKEAELMEF 185 >gi|220934336|ref|YP_002513235.1| ribosome recycling factor [Thioalkalivibrio sp. HL-EbGR7] gi|254809540|sp|B8GQ53|RRF_THISH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|219995646|gb|ACL72248.1| ribosome recycling factor [Thioalkalivibrio sp. HL-EbGR7] Length = 185 Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 84/179 (46%), Positives = 118/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ K RMG +I L+ ++ +RTGR S+LD V VE YGS VP++QVANV V + R L Sbjct: 7 KDAKARMGKSIESLRNELAKIRTGRAHTSLLDHVMVEYYGSDVPISQVANVNVEDARTLT 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+ W+K MV+ VE+ I S+LGLNP G V+R+P+P TEERR LVKV AE +++ Sbjct: 67 VTPWEKTMVSKVEKAIMTSDLGLNPSSMGTVIRVPMPALTEERRRDLVKVVRGEAENARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD + LK K + SED +++IQK+TDS I+ +D EK+KE+M Sbjct: 127 AIRNIRRDANNALKALVKGKEISEDDERRAQDEIQKLTDSHIEEVDKVLAEKEKELMEV 185 >gi|295696146|ref|YP_003589384.1| ribosome recycling factor [Bacillus tusciae DSM 2912] gi|295411748|gb|ADG06240.1| ribosome recycling factor [Bacillus tusciae DSM 2912] Length = 184 Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 74/177 (41%), Positives = 119/177 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ ++RM ++ LKK+ ++R GR +P +LD V VE YG+ +P++Q+A++T EPR+L Sbjct: 5 MKQAEERMNKSLQALKKEFASVRAGRATPGLLDKVTVEYYGTSMPIHQLASITAPEPRLL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK +A +E+ I +S+LGL P +GQV+R+ +P+ T+ERR L ++ AE+S+ Sbjct: 65 VIQPWDKGALAEIEKAILKSDLGLTPTNDGQVIRLAIPQLTQERRQELARMVRKLAEESR 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +++RNIRR+ D ++KS K G SED L+ IQ +TD I+ ID K+KEI Sbjct: 125 VAIRNIRREANDEIRKSEKDGSVSEDEGRRLQERIQGLTDRFIEEIDRLLAAKEKEI 181 >gi|315651639|ref|ZP_07904650.1| ribosome recycling factor [Eubacterium saburreum DSM 3986] gi|315486093|gb|EFU76464.1| ribosome recycling factor [Eubacterium saburreum DSM 3986] Length = 184 Score = 162 bits (409), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 77/178 (43%), Positives = 118/178 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +D+M +I L ++ ++R GR +P +LD +KVE YG+ P+ QV N++V EPR++ Sbjct: 5 IKKFEDKMTKSIDVLLEEYASIRAGRANPHVLDRIKVEYYGTPTPIQQVGNISVPEPRII 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +S W+K ++ +E+ I+ S+LG+NP +G +R+ PE TEERR LVK E K Sbjct: 65 QISPWEKSLLKEIEKAINMSDLGINPTNDGSCIRLVFPELTEERRKELVKDVKKKGEACK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++VRNIRRD +D +KK K+G+ +ED V EN IQKITD I+ +D E+K KEI+ Sbjct: 125 VAVRNIRRDAIDAVKKLEKAGEFTEDDVKDGENKIQKITDKAIERVDKAIEDKSKEIL 182 >gi|227536081|ref|ZP_03966130.1| peptide chain release factor RF4 [Sphingobacterium spiritivorum ATCC 33300] gi|300772051|ref|ZP_07081921.1| ribosome recycling factor [Sphingobacterium spiritivorum ATCC 33861] gi|227243978|gb|EEI93993.1| peptide chain release factor RF4 [Sphingobacterium spiritivorum ATCC 33300] gi|300760354|gb|EFK57180.1| ribosome recycling factor [Sphingobacterium spiritivorum ATCC 33861] Length = 187 Score = 162 bits (409), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 84/186 (45%), Positives = 124/186 (66%), Gaps = 3/186 (1%) Query: 1 MNQVIDLQ--NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 MN++I LQ + KD M +SF + ++ +R G+ SPSMLD + V+ YGS PL QV+NV Sbjct: 1 MNELISLQLDDCKDSMTKAVSFAESELTKIRAGKASPSMLDGISVDYYGSPTPLAQVSNV 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 + R +V+ W+K +++++E+ I +SNLGLNP +G V+R+ VP TEERR LVK A Sbjct: 61 NTTDARTIVIQPWEKSLISAIEKAIIDSNLGLNPQNDGIVIRLVVPALTEERRRDLVKKA 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 AEK +I++RNIR+D + +KK + G ASED + E ++QK+TDS I +D E Sbjct: 121 KEEAEKGRIAIRNIRKDTNESIKKLKNDG-ASEDEIKVGEAEVQKLTDSFIVQVDKLAEL 179 Query: 179 KKKEIM 184 K+K+IM Sbjct: 180 KEKDIM 185 >gi|290968867|ref|ZP_06560404.1| ribosome recycling factor [Megasphaera genomosp. type_1 str. 28L] gi|290781163|gb|EFD93754.1| ribosome recycling factor [Megasphaera genomosp. type_1 str. 28L] Length = 186 Score = 162 bits (409), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 76/179 (42%), Positives = 122/179 (68%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +QN +++M TI LK+D ++RTGR S S+LD V VE YG+ P+ QVANV+ EP ++ Sbjct: 7 VQNYEEKMDKTIEALKRDFTSIRTGRASTSLLDRVTVEYYGTPTPIKQVANVSAPEPSLI 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + W+++++ +E+ I +S+LGLNP +G ++R+ +P+ TEERR L K YAE++K Sbjct: 67 TIVPWERKILGDIEKAILKSDLGLNPNNDGAMIRLEIPKPTEERRKELTKKVSKYAEEAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 + +RNIRRD D +KK+ K+ + +ED +++ IQK+TD +K ID +K+KE+M Sbjct: 127 VVIRNIRRDANDSIKKAEKAKEITEDESKDVQDKIQKLTDKKVKFIDELKLKKEKEVME 185 >gi|260892482|ref|YP_003238579.1| ribosome recycling factor [Ammonifex degensii KC4] gi|260864623|gb|ACX51729.1| ribosome recycling factor [Ammonifex degensii KC4] Length = 184 Score = 161 bits (408), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 73/172 (42%), Positives = 117/172 (68%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M + KKD+ +RTGR SP++L+ V V+ YG P+NQ+A +T EPR+LV+ WD+ Sbjct: 12 MKKAVEHFKKDLAAIRTGRASPALLEKVMVDYYGVPTPVNQLATITAPEPRLLVIQPWDR 71 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 ++ +E+ I +S+LGL P +GQV+R+ +P+ T+ERR LV+VA AE++++++RNIR Sbjct: 72 SIINEIEKAILKSDLGLTPNNDGQVIRLILPQLTQERREELVRVARKRAEEARVAIRNIR 131 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 R+ D LK+ +K SED + L+ ++QK+T+ IK +D+ K+KEIM Sbjct: 132 REANDELKEKQKKENVSEDEIKRLQGEVQKLTEKYIKEVDNLLAAKEKEIME 183 >gi|223041490|ref|ZP_03611693.1| ribosome recycling factor [Actinobacillus minor 202] gi|240948667|ref|ZP_04753039.1| ribosome recycling factor [Actinobacillus minor NM305] gi|223017748|gb|EEF16155.1| ribosome recycling factor [Actinobacillus minor 202] gi|240296883|gb|EER47461.1| ribosome recycling factor [Actinobacillus minor NM305] Length = 185 Score = 161 bits (408), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 78/179 (43%), Positives = 116/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ +DRM ++ LK + +RTGR PS+LD ++VE YGS PL QVANV + R L Sbjct: 7 KDTQDRMEKSLDALKSHISKIRTGRAQPSLLDGIQVEYYGSATPLRQVANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+V+D+ ++++VE+ I S+LGLNP G +R+P+P TEERR L+K+ E+ KI Sbjct: 67 VNVFDRSLISAVEKAILTSDLGLNPSSAGATIRVPLPPLTEERRRDLIKIVKGEGEQGKI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD D +K K + SED +++IQKITDS IK +D K+KE++ F Sbjct: 127 AIRNVRRDANDQIKALLKDKEISEDEERKAQDEIQKITDSYIKKVDEVLAAKEKELLDF 185 >gi|320535432|ref|ZP_08035541.1| ribosome recycling factor [Treponema phagedenis F0421] gi|320147719|gb|EFW39226.1| ribosome recycling factor [Treponema phagedenis F0421] Length = 184 Score = 161 bits (408), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 77/174 (44%), Positives = 119/174 (68%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 +++M +I+ LK D TLRTGR S S+ + ++VE YG PLNQVA++++ E R++V+ Sbjct: 9 EEKMKKSIAALKDDFNTLRTGRASASLFEKIRVECYGELSPLNQVASISIPEARLVVIQP 68 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 WDK ++ ++E+ I +S L LNP +G+++RI +P TE+RR L K A AE+S+I++R Sbjct: 69 WDKSLLPNIEKAILKSELSLNPSNDGKIIRIAIPPLTEDRRKELAKQAKNIAEQSRIAIR 128 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 NIRRDG++ KK +K G SED + + E QK TD+ I I++ EK+KEI+ Sbjct: 129 NIRRDGIEEAKKLQKEGSLSEDDLKTAEEKFQKATDAHISEINTILAEKEKEIL 182 >gi|225574998|ref|ZP_03783608.1| hypothetical protein RUMHYD_03077 [Blautia hydrogenotrophica DSM 10507] gi|225037845|gb|EEG48091.1| hypothetical protein RUMHYD_03077 [Blautia hydrogenotrophica DSM 10507] Length = 183 Score = 161 bits (408), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 81/178 (45%), Positives = 117/178 (65%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 LQ D+M T L+ D+ T+R GR +P +LD ++V+ YG+ PL QVAN+TV EPR++ Sbjct: 5 LQKYDDKMSKTKKSLEADLATIRAGRANPHILDKIQVDYYGTPSPLQQVANITVPEPRVI 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + W+ +MV + + I S+LG+NP +G+++R+ +PE TEERR LVK E +K Sbjct: 65 QIQPWEAKMVKEISKAILSSDLGINPNTDGKMIRLILPELTEERRKELVKDVKKRGEAAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++RNIRRD D KK K+ SED V LE+ IQK+TD +K IDS E+K KEI+ Sbjct: 125 VAIRNIRRDANDAFKKLAKAD-VSEDEVKELEDKIQKMTDKAVKEIDSTVEQKSKEIL 181 >gi|298529658|ref|ZP_07017061.1| ribosome recycling factor [Desulfonatronospira thiodismutans ASO3-1] gi|298511094|gb|EFI34997.1| ribosome recycling factor [Desulfonatronospira thiodismutans ASO3-1] Length = 184 Score = 161 bits (408), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 75/186 (40%), Positives = 125/186 (67%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+QV+D + +++M I+ L KD+ LRTGR S ++D + VE YG+ PLNQ+A++++ Sbjct: 1 MDQVLD--DCREKMDKAIASLDKDLAKLRTGRASVGLVDGITVEYYGTMTPLNQLASISI 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R + + WD+ + + +E+ I +S+LGLNP+ +G+++RI +P TEERR LVK+A Sbjct: 59 PDSRTIAIQPWDRNVFSGIEKAIMKSDLGLNPVSDGKIIRINIPPLTEERRKDLVKMAKK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 Y+E +K+++RN+RR+ D LKK + +ED + ++QKITDS + +D +K+ Sbjct: 119 YSEDAKVALRNVRREANDTLKKMKNDKDLTEDEMHKGHEEVQKITDSYVSKVDRILADKE 178 Query: 181 KEIMHF 186 KEIM F Sbjct: 179 KEIMEF 184 >gi|256830146|ref|YP_003158874.1| ribosome recycling factor [Desulfomicrobium baculatum DSM 4028] gi|256579322|gb|ACU90458.1| ribosome recycling factor [Desulfomicrobium baculatum DSM 4028] Length = 184 Score = 161 bits (407), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 78/179 (43%), Positives = 121/179 (67%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ +RM +I L+KD LRTGR S +++D ++VE YG+ PLNQVA+V++ + R + Sbjct: 6 QDCTNRMQKSIDSLEKDFSKLRTGRASTALVDSIRVEYYGTPTPLNQVASVSIPDSRTIS 65 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S WD+ S+E+ I +S+LGL PI +G+ +RI +P TEERR LVK+A Y E++K+ Sbjct: 66 ISPWDRNAFNSIEKAIMKSDLGLTPINDGRAIRINIPVLTEERRKDLVKMAKKYTEEAKV 125 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD D LKK + + SED + ++++QK TD+ +K D+ EK+KEIM Sbjct: 126 AIRNVRRDVNDALKKMHTAKEISEDDLHKAQDEVQKTTDNFVKKADAVLAEKEKEIMEI 184 >gi|256003336|ref|ZP_05428327.1| ribosome recycling factor [Clostridium thermocellum DSM 2360] gi|281417721|ref|ZP_06248741.1| ribosome recycling factor [Clostridium thermocellum JW20] gi|255992626|gb|EEU02717.1| ribosome recycling factor [Clostridium thermocellum DSM 2360] gi|281409123|gb|EFB39381.1| ribosome recycling factor [Clostridium thermocellum JW20] gi|316940242|gb|ADU74276.1| ribosome recycling factor [Clostridium thermocellum DSM 1313] Length = 183 Score = 161 bits (407), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 73/180 (40%), Positives = 124/180 (68%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 + +NI+++M T+S LK ++ T+R GR + ++LD + V+ YG P+NQ+ ++V EPR+ Sbjct: 3 EYKNIEEKMKKTVSVLKDELNTVRAGRANAAILDRITVDYYGVPTPINQLGTISVPEPRV 62 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 +V+ WD +++ +E+ I +S++G+NP +G+V+R+ P TEERR L K+A Y E + Sbjct: 63 IVIQPWDAQILKEIEKEIQKSDIGINPNNDGKVIRLVFPPLTEERRKELTKLAKKYGEDA 122 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 K+++R+IRRDG++ +K +K+G+ +ED + S E DIQ +TD I ID E K+KEI+ Sbjct: 123 KVAIRSIRRDGIEKMKAMKKNGEITEDDLKSAEKDIQNLTDKYIAEIDKLIEIKEKEILE 182 >gi|242240394|ref|YP_002988575.1| ribosome recycling factor [Dickeya dadantii Ech703] gi|242132451|gb|ACS86753.1| ribosome recycling factor [Dickeya dadantii Ech703] Length = 185 Score = 161 bits (407), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 81/174 (46%), Positives = 113/174 (64%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM + K + +RTGR SPS+LD + VE YGS PL Q+AN+ V + R L V+V+D Sbjct: 12 RMDKCVEAFKSQIGKIRTGRASPSLLDGIHVEYYGSATPLRQLANIVVEDARTLAVTVFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + M +VE+ I S+LGLNP+ G V+R+P+P TEERR L+KV AE+ ++SVRN+ Sbjct: 72 RTMGPAVEKAIMASDLGLNPMSAGTVIRVPLPPLTEERRKDLIKVVRGDAEQGRVSVRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD D LK K SED +++IQK+TDS IK +D+ +K+KE+M F Sbjct: 132 RRDANDKLKVLLKDKTISEDEERRAQDEIQKLTDSFIKKVDAALADKEKELMDF 185 >gi|332284282|ref|YP_004416193.1| ribosome recycling factor [Pusillimonas sp. T7-7] gi|330428235|gb|AEC19569.1| ribosome recycling factor [Pusillimonas sp. T7-7] Length = 186 Score = 161 bits (407), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 81/177 (45%), Positives = 115/177 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+++ RMG +I LK + +RTGR +LD V+VE YGS VP++QVAN+ +L+ R + Sbjct: 8 QSVESRMGKSIETLKVGLSKIRTGRAHAGILDHVQVEYYGSPVPVSQVANINLLDARTIS 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V VW+K M VE+ I +S+LGLNPI G +R+P+P TEERR L KV E +KI Sbjct: 68 VQVWEKSMAGPVEKAIRDSDLGLNPIAMGDSIRVPMPALTEERRRDLTKVVRTEGEDAKI 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +VRN+RRD D LKK K + SED +++++QK+TD + ID +K+ EIM Sbjct: 128 AVRNLRRDANDSLKKLVKDKEISEDDERRMQDEVQKLTDKHVAEIDKLVAQKEAEIM 184 >gi|228475010|ref|ZP_04059738.1| ribosome recycling factor [Staphylococcus hominis SK119] gi|314936580|ref|ZP_07843927.1| ribosome recycling factor [Staphylococcus hominis subsp. hominis C80] gi|228270995|gb|EEK12383.1| ribosome recycling factor [Staphylococcus hominis SK119] gi|313655199|gb|EFS18944.1| ribosome recycling factor [Staphylococcus hominis subsp. hominis C80] Length = 184 Score = 161 bits (407), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 80/180 (44%), Positives = 120/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q+ K RM +I L +++ + GR + ++L+ V V+ YG+ P+ Q+A++ V E R+L Sbjct: 5 IQDTKSRMKKSIENLSRELANISAGRANSNLLNGVNVDYYGAPTPVQQLASINVPEARLL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+S +DK VA +E+ I +NLG+NP +G+V+RI VP TEERR LVK E SK Sbjct: 65 VISPYDKTSVADIEKAIIAANLGVNPTSDGEVIRITVPALTEERRKELVKNVKKIGEDSK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+RNIRRD D LKK K+G +ED + S D+QK+TD++IK ID+ +EK+K+IM Sbjct: 125 VSIRNIRRDINDQLKKDEKNGDITEDDLRSQTEDVQKVTDNSIKEIDNLVDEKEKDIMSV 184 >gi|237736212|ref|ZP_04566693.1| ribosome recycling factor [Fusobacterium mortiferum ATCC 9817] gi|229421765|gb|EEO36812.1| ribosome recycling factor [Fusobacterium mortiferum ATCC 9817] Length = 188 Score = 160 bits (406), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 82/176 (46%), Positives = 117/176 (66%), Gaps = 2/176 (1%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 K++MG + K ++R GR + SMLD +KVE YGS +PLNQV +V+ E R+LV+ Sbjct: 10 CKEKMGKAVEATKHKFTSIRAGRANVSMLDGIKVEQYGSEMPLNQVGSVSAPEARLLVID 69 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 WDK ++ +E+ I +NLGL P +G+V+R+ +PE T +RR VK+A + AE K++V Sbjct: 70 PWDKSLIGKIEKAIIAANLGLTPNNDGKVIRLIMPELTADRRKEYVKMAKSEAENGKVAV 129 Query: 130 RNIRRDGMDHLKK--SRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 RNIR+DG + LKK K SED V +LE +IQK+TD+ IK ID F +K+KEI Sbjct: 130 RNIRKDGNNDLKKLLKDKENPVSEDEVKNLEAEIQKLTDAHIKEIDELFAKKEKEI 185 >gi|127513560|ref|YP_001094757.1| ribosome recycling factor [Shewanella loihica PV-4] gi|166231226|sp|A3QGA0|RRF_SHELP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|126638855|gb|ABO24498.1| ribosome recycling factor [Shewanella loihica PV-4] Length = 185 Score = 160 bits (406), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 79/178 (44%), Positives = 111/178 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ K RM + K M +RTGR PS+LD +KV YG+ PL QV NV++ + R L Sbjct: 7 EDAKSRMAKCVEATKNQMAKVRTGRAHPSLLDSIKVPYYGTPTPLKQVGNVSIEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D M+A+VE+ I S+LGLNP+ G +RIP+P TEERR L+KV A AE +I Sbjct: 67 ITVFDTTMIAAVEKAIMSSDLGLNPMSAGTTIRIPLPALTEERRKDLIKVVRAEAENGRI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +VRN+RRD +K K + +ED V E++IQK TD+ IK ID K+ E+M Sbjct: 127 AVRNVRRDANSDVKALEKEKECTEDDVRRTEDEIQKFTDAHIKQIDEILTAKEAELME 184 >gi|15895066|ref|NP_348415.1| ribosome recycling factor [Clostridium acetobutylicum ATCC 824] gi|22001946|sp|Q97I63|RRF_CLOAB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|15024762|gb|AAK79755.1|AE007688_4 Ribosome recycling factor [Clostridium acetobutylicum ATCC 824] gi|325509204|gb|ADZ20840.1| ribosome recycling factor [Clostridium acetobutylicum EA 2018] Length = 185 Score = 160 bits (406), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 78/180 (43%), Positives = 120/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ ++++M +IS LKK++ +++ GR +P+MLD ++V+ YG+ PLNQ+AN++V E R+L Sbjct: 6 IKELEEKMTKSISALKKELTSMKAGRANPAMLDRIEVDYYGTMTPLNQLANISVPESRVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WDK + S+E+ I S+LGLNP +G +R+ +PE TEE R +VK E K Sbjct: 66 MIQPWDKSAMKSIEKAILISDLGLNPSNDGTTMRLVIPELTEETRKNIVKNVKKAGEDGK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++R IRRD D +K +K +ED + S ENDIQK TDS +K ID E K+KEIM Sbjct: 126 VALRAIRRDANDKVKSLKKDNSITEDEMKSAENDIQKKTDSYVKEIDKMVEAKEKEIMSI 185 >gi|315144762|gb|EFT88778.1| ribosome recycling factor [Enterococcus faecalis TX2141] Length = 185 Score = 160 bits (406), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 73/179 (40%), Positives = 124/179 (69%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K++M L++++ +R GR + S+LD ++V+ YG+ P+NQ+A++ + E R+L Sbjct: 6 LATAKEKMTKAEESLRRELGQIRAGRANASLLDRIQVKYYGAPTPVNQLASINIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK +A +E+ I S++G++P +G V+R+ +P+ TEERR L K AE SK Sbjct: 66 MITPFDKNSIADIEKAIQMSDIGISPTNDGNVIRLVIPQLTEERRKELAKDVKKEAENSK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRN+RRD MD LKK++K+G +ED + S E D+QK+TD +IKNID+ EK++E++ Sbjct: 126 VAVRNVRRDAMDELKKAQKNGDITEDELRSFEKDVQKLTDDSIKNIDAITAEKEQELLE 184 >gi|148270514|ref|YP_001244974.1| ribosome recycling factor [Thermotoga petrophila RKU-1] gi|166231525|sp|A5IMH5|RRF_THEP1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|147736058|gb|ABQ47398.1| ribosome recycling factor [Thermotoga petrophila RKU-1] Length = 185 Score = 160 bits (406), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 78/180 (43%), Positives = 122/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K++M T+ ++ ++ +RTG+ SP++L+ +KV+ YG P+NQ+A ++V E R L Sbjct: 6 IKEAKEKMKKTLERIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISVSEERTL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK +++ +E+ I+ S+LGLNPI +G V+R+ P T E+R VK A E+ K Sbjct: 66 VIKPWDKSVLSLIEKAINASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIVEEGK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIRRD + +K+ +K GK ED LEN+IQK+TD I+N+D FE KK+EIM F Sbjct: 126 IAIRNIRRDILKKIKEDQKEGKIPEDDAKRLENEIQKLTDEFIENLDKVFEIKKEEIMEF 185 >gi|332637898|ref|ZP_08416761.1| ribosome recycling factor [Weissella cibaria KACC 11862] Length = 185 Score = 160 bits (405), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 79/185 (42%), Positives = 121/185 (65%), Gaps = 2/185 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 N ++D N +RMG L++++ +R G +PS+L V E YG+ PLNQ+A++TV Sbjct: 3 NPILDSAN--ERMGKAADVLRRELGNIRAGVANPSILRNVTAEYYGAPTPLNQLASITVP 60 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 E R+L+++ +DK ++ +E+ I S+LGL P +G V+R+ +P TEE R +L K Sbjct: 61 EARVLLITPFDKSILKDIEQAIFASDLGLTPANDGSVIRLVIPALTEETRKSLAKEVKGE 120 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 +EK+K++VRN+RRD MD KK+ K+G SED LE+DIQK TD+ +KNID EK+K Sbjct: 121 SEKAKVAVRNVRRDAMDDAKKALKNGDMSEDEARKLEDDIQKATDAAVKNIDGIAAEKEK 180 Query: 182 EIMHF 186 E++ Sbjct: 181 ELLTI 185 >gi|228477911|ref|ZP_04062525.1| ribosome recycling factor [Streptococcus salivarius SK126] gi|228250401|gb|EEK09641.1| ribosome recycling factor [Streptococcus salivarius SK126] Length = 185 Score = 160 bits (405), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 78/178 (43%), Positives = 117/178 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+R + L ++ ++R GR + S+LD + VE YG+ PLNQ+A++TV E R+L Sbjct: 6 IEKAKERFAHSHESLAREFGSIRAGRANASLLDRITVEYYGAPTPLNQLASITVPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +DK +A +ER I+ES+LG+NP +G V+R+ +P TEE R L K E +K Sbjct: 66 LISPFDKGSIADIERAINESDLGINPANDGSVVRLVIPALTEETRKELAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 I++RNIRRD MD KK K + +ED + +LE DIQK TD +K IDS EK+KE++ Sbjct: 126 IAIRNIRRDAMDEAKKQEKDKEITEDQLKALEKDIQKATDDAVKKIDSMTAEKEKELL 183 >gi|226313032|ref|YP_002772926.1| ribosome recycling factor [Brevibacillus brevis NBRC 100599] gi|254809495|sp|C0ZF63|RRF_BREBN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226095980|dbj|BAH44422.1| ribosome recycling factor [Brevibacillus brevis NBRC 100599] Length = 185 Score = 160 bits (405), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 77/186 (41%), Positives = 123/186 (66%), Gaps = 1/186 (0%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M Q + L +++DRM I+ LK+D+ +LR GR +P+MLD V V+ YG+ P++Q+AN++V Sbjct: 1 MPQTV-LNDMEDRMNKAINALKRDLSSLRAGRANPAMLDRVTVDYYGTPTPISQLANISV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPRML + WDK + ++R + +S+LG++P +G ++R+ +P TEERR LVK+A Sbjct: 60 PEPRMLTIQPWDKTALKEIDRALQQSDLGISPSNDGVIIRLIIPPLTEERRKELVKLAGK 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E++K+++RNIRRD D +KK K+ SED + IQK TD I +D ++K+ Sbjct: 120 GGEEAKVAIRNIRRDANDEIKKLEKAATISEDDSRRHQETIQKTTDKFIAEVDKIVKDKE 179 Query: 181 KEIMHF 186 K+I+ Sbjct: 180 KDILEV 185 >gi|193215251|ref|YP_001996450.1| ribosome recycling factor [Chloroherpeton thalassium ATCC 35110] gi|193088728|gb|ACF14003.1| ribosome recycling factor [Chloroherpeton thalassium ATCC 35110] Length = 187 Score = 160 bits (405), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 83/179 (46%), Positives = 111/179 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + + RM +I ++ + +RTG+ S +LD +KVEAYG +PL QV NV L+ R L Sbjct: 8 LSDAESRMQKSIENVRHEFAAIRTGKASAGLLDGIKVEAYGQAMPLKQVGNVGTLDSRTL 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V VWDK MVA+VE+ I +SNLGLNP +GQ +RIPVP TEERR VKV AE+ K Sbjct: 68 TVQVWDKGMVATVEKAIRDSNLGLNPATDGQTIRIPVPPLTEERRKEYVKVTKKQAEEGK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRNIRRD + K K +ED A + DI +T K++D +K+KEIM Sbjct: 128 VAVRNIRRDANHAIDKLEKEKLITEDEKARAKKDIDNLTHKYEKSLDELTSKKEKEIME 186 >gi|312898662|ref|ZP_07758052.1| ribosome recycling factor [Megasphaera micronuciformis F0359] gi|310620581|gb|EFQ04151.1| ribosome recycling factor [Megasphaera micronuciformis F0359] Length = 186 Score = 160 bits (405), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 77/170 (45%), Positives = 115/170 (67%) Query: 17 TISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMV 76 TI K+++ ++RTGR S S+LD V V+ YG+ P+NQVANV+ EPR++ +S W++ M+ Sbjct: 17 TIENFKRNLSSIRTGRASTSLLDRVSVDYYGTPTPVNQVANVSAPEPRLITISPWERTML 76 Query: 77 ASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDG 136 +E+ I +S+LGLNP +G ++R+ +P+ TEERR L K AE +K++VRNIRRD Sbjct: 77 GEIEKAILKSDLGLNPNNDGTIIRLEIPQLTEERRKELSKKVGKEAEDAKVAVRNIRRDS 136 Query: 137 MDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 D +KKS K + +ED + IQKITD+ IK ID ++K+KE+M Sbjct: 137 NDAVKKSEKKKEITEDDSKEAQTKIQKITDAKIKQIDEIKDKKEKEVMEV 186 >gi|300933102|ref|ZP_07148358.1| ribosome recycling factor [Corynebacterium resistens DSM 45100] Length = 185 Score = 160 bits (405), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 73/176 (41%), Positives = 119/176 (67%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 ++RM ++ ++++ T+RTGR +P+M + + E YG P+ Q+A ++V EPRML++ Sbjct: 10 EERMTSSVEHAREELTTIRTGRANPAMFNGIIAEYYGVPTPITQMATISVPEPRMLIIKP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 ++ + +E I S+LG+NP +GQVLR+ VP+ TEERR LVKVA + E +KI++R Sbjct: 70 YEASTMQDIENAIRNSDLGVNPTNDGQVLRVTVPQLTEERRRDLVKVAKSKGEDAKIAIR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 NIRR GM+ L K +K G+A ED V + E D++K+T + ++ +D+ E K+KE+M Sbjct: 130 NIRRKGMEGLGKIQKDGEAGEDEVKAAEKDLEKVTQNHVEQVDALVENKEKELMEV 185 >gi|296117647|ref|ZP_06836231.1| ribosome recycling factor [Corynebacterium ammoniagenes DSM 20306] gi|295969378|gb|EFG82619.1| ribosome recycling factor [Corynebacterium ammoniagenes DSM 20306] Length = 185 Score = 160 bits (405), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 73/175 (41%), Positives = 119/175 (68%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 ++RM +++ +++++T+RTGR +PSM + V E YG P+ Q+++++V EPRML++ Sbjct: 10 EERMANSVEHTREELVTIRTGRANPSMFNGVVAEYYGVPTPITQMSSISVPEPRMLLIKP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +++ M+ +E I S+LG+NP +GQVLR+ +P+ TEERR LVKVA + E KI++R Sbjct: 70 YEQSMMGEIENAIRNSDLGVNPTNDGQVLRVTIPQLTEERRRDLVKVAKSKGEDGKIAIR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 NIRR M+ LKK +K G A ED +A+ E +++KIT I+ +D K+ E+M Sbjct: 130 NIRRKAMEQLKKLQKDGDAGEDEIAAAEKEMEKITHGYIEQVDKLVANKEAELME 184 >gi|145300058|ref|YP_001142899.1| ribosome recycling factor [Aeromonas salmonicida subsp. salmonicida A449] gi|166230408|sp|A4SQH9|RRF_AERS4 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|142852830|gb|ABO91151.1| ribosome recycling factor [Aeromonas salmonicida subsp. salmonicida A449] Length = 185 Score = 160 bits (405), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 81/178 (45%), Positives = 113/178 (63%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 + KDRM ++ LK M +RTGR PS+LD ++VE YG+ PL Q+ANV + R L + Sbjct: 8 DAKDRMAKSVESLKTQMSKIRTGRAHPSLLDGIQVEYYGAATPLKQLANVVAEDARTLSI 67 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 S++D+ M+ +VE+ I S+LGLNP GQ LR+P+P TEERR L K+ A AE ++++ Sbjct: 68 SIFDRSMIQAVEKAILTSDLGLNPSSNGQTLRVPLPPLTEERRRDLTKIVRAEAEGARVA 127 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 VRNIRRD LK K + SED + +IQK+TDS IK +D K+KE+M Sbjct: 128 VRNIRRDANADLKALLKDKEISEDDDRRAQEEIQKLTDSFIKLVDDALAAKEKELMEI 185 >gi|164687908|ref|ZP_02211936.1| hypothetical protein CLOBAR_01553 [Clostridium bartlettii DSM 16795] gi|164602321|gb|EDQ95786.1| hypothetical protein CLOBAR_01553 [Clostridium bartlettii DSM 16795] Length = 184 Score = 160 bits (404), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 78/177 (44%), Positives = 116/177 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++ +M TI LK + T+R GR + MLD ++V+ YG+ P+NQ+ +++V EPR LV Sbjct: 6 KKLQAQMDKTIEALKYEFSTIRAGRANAQMLDKIRVDYYGTPTPINQIGSISVPEPRTLV 65 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++ WDK + +E+ I S+LGLNP +G V+R+ VP TEERR+ L K A AE+ K+ Sbjct: 66 INPWDKSAMKEIEKAIMNSDLGLNPTNDGDVIRLNVPALTEERRIELTKKAKKAAEEFKV 125 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +RN RRD D LKK +K G+ +ED + + D+QK+TD IK IDS K+K+IM Sbjct: 126 RIRNERRDANDKLKKMQKDGEITEDELKRGQEDVQKLTDKYIKEIDSLLAVKEKDIM 182 >gi|70726656|ref|YP_253570.1| ribosome recycling factor [Staphylococcus haemolyticus JCSC1435] gi|123660049|sp|Q4L5W1|RRF_STAHJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|68447380|dbj|BAE04964.1| ribosome recycling factor [Staphylococcus haemolyticus JCSC1435] Length = 184 Score = 160 bits (404), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 79/180 (43%), Positives = 118/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q+ K RM +I L +++ + GR + ++L V V+ YG+ P+ Q+A++ V E R+L Sbjct: 5 IQDTKARMSKSIDNLSRELANISAGRANSNLLSGVTVDYYGAPTPVQQLASINVPEARLL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+S +DK VA +E+ I+ +NLG+NP +G+V+RI VP TEERR LVK E +K Sbjct: 65 VISPYDKSSVADIEKAIYAANLGVNPTSDGEVIRITVPALTEERRKELVKNVKKIGEDAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+RNIRRD D LKK K+G +ED + S D+QK TD++IK ID E+K+K+IM Sbjct: 125 VSIRNIRRDINDQLKKDEKNGDITEDDLRSQTEDVQKATDNSIKEIDQLVEDKEKDIMSV 184 >gi|328948074|ref|YP_004365411.1| ribosome-recycling factor [Treponema succinifaciens DSM 2489] gi|328448398|gb|AEB14114.1| Ribosome-recycling factor [Treponema succinifaciens DSM 2489] Length = 179 Score = 160 bits (404), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 75/173 (43%), Positives = 119/173 (68%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM T++ LK++ ++RTGR S ++ D V+V+ YG+ PLNQV N+++ E R +V+S +D Sbjct: 7 RMEKTVNSLKEEYKSIRTGRASAAIFDKVRVDYYGTPTPLNQVGNISIPEARTIVISPFD 66 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K ++ +E+ I ++ LGLNP +G+V+RI +P T +RR LVK A A AE + ++RNI Sbjct: 67 KSIMGDIEKAIQKAELGLNPNNDGKVIRIAIPPLTADRRKELVKQAKATAENYRTTIRNI 126 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 RRDG + LKK +K+G+ +ED + + +QK+TD I+ I+ +E K+KEIM Sbjct: 127 RRDGNEDLKKQQKAGELTEDQLKTETEKLQKLTDKYIEEINGIYEAKEKEIME 179 >gi|30263828|ref|NP_846205.1| ribosome recycling factor [Bacillus anthracis str. Ames] gi|47529252|ref|YP_020601.1| ribosome recycling factor [Bacillus anthracis str. 'Ames Ancestor'] gi|49186674|ref|YP_029926.1| ribosome recycling factor [Bacillus anthracis str. Sterne] gi|65321151|ref|ZP_00394110.1| COG0233: Ribosome recycling factor [Bacillus anthracis str. A2012] gi|170706904|ref|ZP_02897362.1| ribosome recycling factor [Bacillus anthracis str. A0389] gi|229604313|ref|YP_002868062.1| ribosome recycling factor [Bacillus anthracis str. A0248] gi|33301536|sp|Q81WL1|RRF_BACAN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|254809489|sp|C3P5M6|RRF_BACAA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|30258472|gb|AAP27691.1| ribosome recycling factor [Bacillus anthracis str. Ames] gi|47504400|gb|AAT33076.1| ribosome recycling factor [Bacillus anthracis str. 'Ames Ancestor'] gi|49180601|gb|AAT55977.1| ribosome recycling factor [Bacillus anthracis str. Sterne] gi|170128322|gb|EDS97191.1| ribosome recycling factor [Bacillus anthracis str. A0389] gi|229268721|gb|ACQ50358.1| ribosome recycling factor [Bacillus anthracis str. A0248] Length = 185 Score = 160 bits (404), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 81/184 (44%), Positives = 120/184 (65%), Gaps = 2/184 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 QV+ N ++M ++ +++ T+R GR S S+LD V+V+ YG+ P+ Q+AN+TV Sbjct: 3 QQVLKFSN--EKMEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVP 60 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 E R+LV+ +DK + +E+ I +++LGLNP +G V+RI P TEERR LVKV Y Sbjct: 61 EARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKY 120 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 AE++K++VRN+RRDG D LKK K+G+ +ED + DIQK TD I +D + K+K Sbjct: 121 AEEAKVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEK 180 Query: 182 EIMH 185 EIM Sbjct: 181 EIME 184 >gi|217970577|ref|YP_002355811.1| ribosome recycling factor [Thauera sp. MZ1T] gi|217507904|gb|ACK54915.1| ribosome recycling factor [Thauera sp. MZ1T] Length = 185 Score = 160 bits (404), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 79/179 (44%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +NI+ +M ++ LK D+ +RTGR +LD V VE YGS VP+NQVAN+T+++ R + Sbjct: 7 KNIEQKMLKSVEALKTDLAKVRTGRAHTGLLDHVMVEYYGSMVPVNQVANITLIDARTIG 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K M+ VER I +S+LGLNP G++LR+P+P TEERR L KV E +K+ Sbjct: 67 VQTWEKPMLGKVERAIRDSDLGLNPANMGELLRVPMPALTEERRRDLTKVVRHEGETAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRDG LK + K SED E++IQK+TD + ID +K++E+M Sbjct: 127 AIRNLRRDGNQQLKDAVKDKAISEDDERRGEDEIQKLTDRYVAEIDKLLAQKEQELMQI 185 >gi|281412821|ref|YP_003346900.1| ribosome recycling factor [Thermotoga naphthophila RKU-10] gi|281373924|gb|ADA67486.1| ribosome recycling factor [Thermotoga naphthophila RKU-10] Length = 185 Score = 160 bits (404), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 78/180 (43%), Positives = 122/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K++M T+ ++ ++ +RTG+ SP++L+ +KV+ YG P+NQ+A ++V E R L Sbjct: 6 IKEAKEKMKRTLEKIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISVSEERTL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK +++ +E+ I+ S+LGLNPI +G V+R+ P T E+R VK A E+ K Sbjct: 66 VIKPWDKSVLSLIEKAINASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIVEEGK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIRRD + +K+ +K GK ED LEN+IQK+TD I+N+D FE KK+EIM F Sbjct: 126 IAIRNIRRDILKKIKEDQKEGKIPEDDAKRLENEIQKLTDEFIENLDKVFEIKKEEIMEF 185 >gi|167854950|ref|ZP_02477725.1| ribosome releasing factor [Haemophilus parasuis 29755] gi|219870409|ref|YP_002474784.1| ribosome recycling factor [Haemophilus parasuis SH0165] gi|254809514|sp|B8F3D4|RRF_HAEPS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|167853907|gb|EDS25146.1| ribosome releasing factor [Haemophilus parasuis 29755] gi|219690613|gb|ACL31836.1| ribosome recycling factor [Haemophilus parasuis SH0165] Length = 185 Score = 160 bits (404), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 77/179 (43%), Positives = 116/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK + +RTGR PS+LD ++VE YGS PL Q+ANV + R L Sbjct: 7 KDTQERMEKSLEALKGHISKIRTGRAQPSLLDAIQVEYYGSATPLRQLANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+V+D+ ++++VE+ I S+LGLNP G +R+P+P TEERR L+K+ E+ K+ Sbjct: 67 VTVFDRSLISAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIVKGEGEQGKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RNIRRD D +K K + SE+ ++DIQKITD IK +D +K+KE+M F Sbjct: 127 SIRNIRRDANDKIKTLEKEKQISENDERKAQDDIQKITDIYIKKVDEILADKEKELMDF 185 >gi|229545182|ref|ZP_04433907.1| ribosome recycling factor [Enterococcus faecalis TX1322] gi|229309727|gb|EEN75714.1| ribosome recycling factor [Enterococcus faecalis TX1322] Length = 185 Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 73/179 (40%), Positives = 123/179 (68%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K++M L++++ +R GR + S+LD ++VE YG+ P+NQ+A++ + E R+L Sbjct: 6 LATAKEKMTKAEESLRRELGQIRAGRANASLLDRIQVEYYGAPTPVNQLASINIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK +A +E+ I S++G++P +G V+R+ +P+ TEERR L K AE SK Sbjct: 66 MITPFDKNSIADIEKAIQMSDIGISPTNDGNVIRLVIPQLTEERRKELAKDVKKEAENSK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRN+RRD MD LKK++K+ +ED + S E D+QK+TD +IKNID+ EK++E++ Sbjct: 126 VAVRNVRRDAMDELKKAQKNSDITEDELRSFEKDVQKLTDDSIKNIDAITAEKEQELLE 184 >gi|52425984|ref|YP_089121.1| ribosome recycling factor [Mannheimia succiniciproducens MBEL55E] gi|60390244|sp|Q65R74|RRF_MANSM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|52308036|gb|AAU38536.1| Frr protein [Mannheimia succiniciproducens MBEL55E] Length = 185 Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 77/179 (43%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ +DRM ++ LK + +RTGR PS+LD ++V+ YGS PL Q+ANV + R L Sbjct: 7 KDTQDRMEKSLEALKGHIAKIRTGRAQPSLLDAIQVDYYGSATPLRQLANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+V+D+ ++ +VE+ I S+LGLNP G +R+P+P TEERR L+K+ E+ K+ Sbjct: 67 VTVFDRSLIQAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIVKGEGEQGKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD D +K K + SE+ E +IQKITDS IK +D EK+KE+M F Sbjct: 127 AIRNVRRDANDKIKALLKDKEISENDQRKAEEEIQKITDSYIKKVDEVLAEKEKELMDF 185 >gi|312864198|ref|ZP_07724432.1| ribosome recycling factor [Streptococcus vestibularis F0396] gi|322517322|ref|ZP_08070197.1| ribosome recycling factor [Streptococcus vestibularis ATCC 49124] gi|311100199|gb|EFQ58408.1| ribosome recycling factor [Streptococcus vestibularis F0396] gi|322124019|gb|EFX95572.1| ribosome recycling factor [Streptococcus vestibularis ATCC 49124] Length = 185 Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 78/178 (43%), Positives = 116/178 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+R + L ++ +R GR + S+LD + VE YG+ PLNQ+A++TV E R+L Sbjct: 6 IEKAKERFAHSHESLAREFGAIRAGRANASLLDRITVEYYGAPTPLNQLASITVPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +DK +A +ER I+ES+LG+NP +G V+R+ +P TEE R L K E +K Sbjct: 66 LISPFDKGSIADIERAINESDLGINPANDGSVVRLVIPALTEETRKELAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 I++RNIRRD MD KK K + +ED + +LE DIQK TD +K IDS EK+KE++ Sbjct: 126 IAIRNIRRDAMDEAKKQEKDKEITEDQLKALEKDIQKATDDAVKKIDSMTAEKEKELL 183 >gi|126173691|ref|YP_001049840.1| ribosome recycling factor [Shewanella baltica OS155] gi|217974057|ref|YP_002358808.1| ribosome recycling factor [Shewanella baltica OS223] gi|304409565|ref|ZP_07391185.1| ribosome recycling factor [Shewanella baltica OS183] gi|307303923|ref|ZP_07583676.1| ribosome recycling factor [Shewanella baltica BA175] gi|166231224|sp|A3D2K8|RRF_SHEB5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|254809529|sp|B8E7R3|RRF_SHEB2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|125996896|gb|ABN60971.1| ribosome recycling factor [Shewanella baltica OS155] gi|217499192|gb|ACK47385.1| ribosome recycling factor [Shewanella baltica OS223] gi|304352083|gb|EFM16481.1| ribosome recycling factor [Shewanella baltica OS183] gi|306912821|gb|EFN43244.1| ribosome recycling factor [Shewanella baltica BA175] Length = 185 Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 81/183 (44%), Positives = 114/183 (62%), Gaps = 4/183 (2%) Query: 7 LQNIK----DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLE 62 ++NIK +RMG + K M +RTGR PS+LD ++V YG+ PLNQVANV V + Sbjct: 2 IENIKKDAQERMGKCVDATKNQMAKVRTGRAHPSLLDSIQVSYYGTMTPLNQVANVGVED 61 Query: 63 PRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 R L V+V+D+ + +VE+ I S+LGLNP+ G LRIP+P TEERR +KV A Sbjct: 62 SRTLSVTVFDRSAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVVRNEA 121 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 E +I++RN+RRD + +KK K+ +ED V E ++QK TD+ IK ID K+ E Sbjct: 122 ENGRIAIRNVRRDAISEVKKLEKAKACTEDDVRRSEEEVQKFTDAHIKKIDEILAAKEIE 181 Query: 183 IMH 185 +M Sbjct: 182 LME 184 >gi|206603564|gb|EDZ40044.1| Ribosome recycling factor [Leptospirillum sp. Group II '5-way CG'] Length = 184 Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 75/179 (41%), Positives = 124/179 (69%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 DL+ + ++ + F KK++ TLRTGR S S+L+ VK+ YG+ +++VA++ +++ R+ Sbjct: 4 DLKEPQKKLESAVEFFKKEIQTLRTGRPSLSLLENVKISYYGNPSSVDKVASLNIMDNRI 63 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 +V+S WD +M+ +E+ I +N+GL P +G+V+RI VP TEERR +VK+ AE + Sbjct: 64 IVISPWDMKMIPEIEKAIMAANIGLTPQNDGKVIRIAVPPMTEERRKQMVKLLKKMAEDA 123 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 KI++RNIRRDG D LKK + G ED + L++++QKITD T++ +D ++K++EIM Sbjct: 124 KIAIRNIRRDGNDELKKKKSDGLIQEDRLKKLQDELQKITDQTVQKVDDLTQKKEQEIM 182 >gi|124516676|gb|EAY58184.1| ribosome recycling factor [Leptospirillum rubarum] Length = 184 Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 76/179 (42%), Positives = 125/179 (69%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 DL+ + ++ + F KK++ TLRTGR S S+L+ VKV YG+ +++VA++ +++ R+ Sbjct: 4 DLKEPQKKLESAVEFFKKEIQTLRTGRPSLSLLENVKVSYYGNPSSVDKVASLNIMDNRI 63 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 +V+S WD +M+ +E+ I +N+GL P +G+V+RI VP TEERR +VK+ AE++ Sbjct: 64 IVISPWDMKMIPEIEKAILAANIGLTPQNDGKVIRIAVPPMTEERRKQMVKLLKKMAEEA 123 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 KI++RNIRRDG D LKK + G ED + L++++QK+TD T++ ID ++K++EIM Sbjct: 124 KIAIRNIRRDGNDELKKKKSDGLIQEDRLKKLQDELQKMTDQTVQKIDDLTQKKEQEIM 182 >gi|54310081|ref|YP_131101.1| ribosome recycling factor [Photobacterium profundum SS9] gi|60390707|sp|Q6LN27|RRF_PHOPR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|46914520|emb|CAG21299.1| putative ribosome recycling factor [Photobacterium profundum SS9] Length = 185 Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 78/182 (42%), Positives = 121/182 (66%), Gaps = 1/182 (0%) Query: 6 DLQN-IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 ++QN ++RMG ++ LK ++ +RTGR PS+LD + VE YG++ PL Q+ANV + R Sbjct: 4 EIQNDAQERMGKSVDALKNQLVKIRTGRAHPSLLDTIYVEYYGANTPLKQLANVVAEDSR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 L ++V+D+E+ +E+ I S+LGLNP+ G V+R+P+P TEERR LVK+ AE+ Sbjct: 64 TLAITVFDRELTPKIEKAIMMSDLGLNPMSAGTVIRVPLPPLTEERRRDLVKIVRKEAEQ 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++++RNIRRD LK K + SED +++IQK+TD +KNI++ E K+KE+M Sbjct: 124 GRVAIRNIRRDANADLKALLKDKEISEDDDRRAQDEIQKLTDVAVKNIEAVLEVKEKELM 183 Query: 185 HF 186 Sbjct: 184 EV 185 >gi|322372351|ref|ZP_08046887.1| ribosome recycling factor [Streptococcus sp. C150] gi|321277393|gb|EFX54462.1| ribosome recycling factor [Streptococcus sp. C150] Length = 185 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 78/178 (43%), Positives = 116/178 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+R + L ++ ++R GR + S+LD + VE YG+ PLNQ+A++TV E R+L Sbjct: 6 IEKAKERFAHSHESLAREFGSIRAGRANASLLDRITVEYYGAPTPLNQLASITVPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +DK +A +ER I+ES+LG+NP +G V+R+ +P TEE R L K E +K Sbjct: 66 LISPFDKGSIADIERAINESDLGINPANDGSVVRLVIPALTEETRKELAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 I++RNIRRD MD KK K + +ED + LE DIQK TD +K IDS EK+KE++ Sbjct: 126 IAIRNIRRDAMDEAKKQEKDKEITEDQLKGLEKDIQKATDDAVKKIDSMTAEKEKELL 183 >gi|229092864|ref|ZP_04223998.1| Ribosome-recycling factor [Bacillus cereus Rock3-42] gi|228690486|gb|EEL44269.1| Ribosome-recycling factor [Bacillus cereus Rock3-42] Length = 185 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 79/179 (44%), Positives = 119/179 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ ++M ++ +++ T+R GR S S+LD V+V+ YG+ P+ Q+AN+TV E R+L Sbjct: 6 LKSSNEKMEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +DK + +E+ I +++LGLNP +G V+RI P TEERR LVKV YAE++K Sbjct: 66 VIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRN+RRDG D LKK K+G+ +ED + DIQK TD I +D + K+KEIM Sbjct: 126 VAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIME 184 >gi|170017339|ref|YP_001728258.1| ribosome recycling factor [Leuconostoc citreum KM20] gi|190360251|sp|B1MZ62|RRF_LEUCK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|169804196|gb|ACA82814.1| Ribosome recycling factor [Leuconostoc citreum KM20] Length = 181 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 81/181 (44%), Positives = 122/181 (67%), Gaps = 3/181 (1%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 DL + K RM L++++ ++RTGR +P +LD ++VE YG+ PLNQVA+++V E Sbjct: 2 AFDLTDAKSRMQGAQDALQRELTSIRTGRANPHILDRIEVEYYGAMTPLNQVASISVPEA 61 Query: 64 RMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAE 123 R+L+++ +DK + + R I+ S+LGLNP +G ++R+ +P+ TEE R L K A AE Sbjct: 62 RVLLITPFDKTALEEIIRAINMSDLGLNPSSDGNIVRLMIPQMTEEGRKDLAKQVKAEAE 121 Query: 124 KSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 K+K+SVRN+RRD MD +KK + + ED V ENDIQK+TD+ IK ID EK+KE+ Sbjct: 122 KAKVSVRNVRRDAMDSVKKEK---EMPEDDVRKAENDIQKLTDNNIKAIDDIASEKEKEL 178 Query: 184 M 184 + Sbjct: 179 L 179 >gi|49478397|ref|YP_037885.1| ribosome recycling factor [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141664|ref|YP_085165.1| ribosome recycling factor [Bacillus cereus E33L] gi|118479046|ref|YP_896197.1| ribosome recycling factor [Bacillus thuringiensis str. Al Hakam] gi|165872626|ref|ZP_02217257.1| ribosome recycling factor [Bacillus anthracis str. A0488] gi|167635820|ref|ZP_02394129.1| ribosome recycling factor [Bacillus anthracis str. A0442] gi|167639854|ref|ZP_02398123.1| ribosome recycling factor [Bacillus anthracis str. A0193] gi|170687902|ref|ZP_02879116.1| ribosome recycling factor [Bacillus anthracis str. A0465] gi|177652096|ref|ZP_02934642.1| ribosome recycling factor [Bacillus anthracis str. A0174] gi|190568475|ref|ZP_03021382.1| ribosome recycling factor [Bacillus anthracis Tsiankovskii-I] gi|196036913|ref|ZP_03104297.1| ribosome recycling factor [Bacillus cereus W] gi|196042138|ref|ZP_03109421.1| ribosome recycling factor [Bacillus cereus NVH0597-99] gi|196044581|ref|ZP_03111816.1| ribosome recycling factor [Bacillus cereus 03BB108] gi|218904952|ref|YP_002452786.1| ribosome recycling factor [Bacillus cereus AH820] gi|225865805|ref|YP_002751183.1| ribosome recycling factor [Bacillus cereus 03BB102] gi|227813268|ref|YP_002813277.1| ribosome recycling factor [Bacillus anthracis str. CDC 684] gi|228916461|ref|ZP_04080027.1| Ribosome-recycling factor [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228928872|ref|ZP_04091904.1| Ribosome-recycling factor [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935138|ref|ZP_04097965.1| Ribosome-recycling factor [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228947543|ref|ZP_04109833.1| Ribosome-recycling factor [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229123337|ref|ZP_04252541.1| Ribosome-recycling factor [Bacillus cereus 95/8201] gi|229162760|ref|ZP_04290717.1| Ribosome-recycling factor [Bacillus cereus R309803] gi|229186063|ref|ZP_04313233.1| Ribosome-recycling factor [Bacillus cereus BGSC 6E1] gi|254683469|ref|ZP_05147329.1| ribosome recycling factor [Bacillus anthracis str. CNEVA-9066] gi|254721990|ref|ZP_05183779.1| ribosome recycling factor [Bacillus anthracis str. A1055] gi|254735862|ref|ZP_05193568.1| ribosome recycling factor [Bacillus anthracis str. Western North America USA6153] gi|254739612|ref|ZP_05197306.1| ribosome recycling factor [Bacillus anthracis str. Kruger B] gi|254756015|ref|ZP_05208046.1| ribosome recycling factor [Bacillus anthracis str. Vollum] gi|254759324|ref|ZP_05211349.1| ribosome recycling factor [Bacillus anthracis str. Australia 94] gi|301055314|ref|YP_003793525.1| ribosome releasing factor [Bacillus anthracis CI] gi|60390240|sp|Q636K2|RRF_BACCZ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|60390255|sp|Q6HEZ1|RRF_BACHK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166230411|sp|A0RHJ7|RRF_BACAH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226703251|sp|B7JJA2|RRF_BACC0 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|254809490|sp|C3L7A3|RRF_BACAC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|254809491|sp|C1EP48|RRF_BACC3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|49329953|gb|AAT60599.1| ribosome recycling factor [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51975133|gb|AAU16683.1| ribosome recycling factor [Bacillus cereus E33L] gi|118418271|gb|ABK86690.1| ribosome recycling factor [Bacillus thuringiensis str. Al Hakam] gi|164711658|gb|EDR17204.1| ribosome recycling factor [Bacillus anthracis str. A0488] gi|167512255|gb|EDR87632.1| ribosome recycling factor [Bacillus anthracis str. A0193] gi|167528777|gb|EDR91535.1| ribosome recycling factor [Bacillus anthracis str. A0442] gi|170668218|gb|EDT18967.1| ribosome recycling factor [Bacillus anthracis str. A0465] gi|172082465|gb|EDT67530.1| ribosome recycling factor [Bacillus anthracis str. A0174] gi|190560479|gb|EDV14457.1| ribosome recycling factor [Bacillus anthracis Tsiankovskii-I] gi|195990468|gb|EDX54452.1| ribosome recycling factor [Bacillus cereus W] gi|196024616|gb|EDX63288.1| ribosome recycling factor [Bacillus cereus 03BB108] gi|196026990|gb|EDX65614.1| ribosome recycling factor [Bacillus cereus NVH0597-99] gi|218535243|gb|ACK87641.1| ribosome recycling factor [Bacillus cereus AH820] gi|225788805|gb|ACO29022.1| ribosome recycling factor [Bacillus cereus 03BB102] gi|227004475|gb|ACP14218.1| ribosome recycling factor [Bacillus anthracis str. CDC 684] gi|228597482|gb|EEK55132.1| Ribosome-recycling factor [Bacillus cereus BGSC 6E1] gi|228620642|gb|EEK77511.1| Ribosome-recycling factor [Bacillus cereus R309803] gi|228660113|gb|EEL15749.1| Ribosome-recycling factor [Bacillus cereus 95/8201] gi|228812063|gb|EEM58394.1| Ribosome-recycling factor [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228824503|gb|EEM70308.1| Ribosome-recycling factor [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830679|gb|EEM76284.1| Ribosome-recycling factor [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228843040|gb|EEM88122.1| Ribosome-recycling factor [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|300377483|gb|ADK06387.1| ribosome releasing factor [Bacillus cereus biovar anthracis str. CI] Length = 185 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 79/179 (44%), Positives = 119/179 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ ++M ++ +++ T+R GR S S+LD V+V+ YG+ P+ Q+AN+TV E R+L Sbjct: 6 LKSSNEKMEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +DK + +E+ I +++LGLNP +G V+RI P TEERR LVKV YAE++K Sbjct: 66 VIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRN+RRDG D LKK K+G+ +ED + DIQK TD I +D + K+KEIM Sbjct: 126 VAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIME 184 >gi|46198814|ref|YP_004481.1| ribosome recycling factor (rrf) [Thermus thermophilus HB27] gi|55980827|ref|YP_144124.1| ribosome recycling factor [Thermus thermophilus HB8] gi|6831652|sp|Q9WX76|RRF_THET8 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|60390719|sp|Q72KE0|RRF_THET2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|11513707|pdb|1EH1|A Chain A, Ribosome Recycling Factor From Thermus Thermophilus gi|157836509|pdb|2V46|Y Chain Y, Structure Of The Ribosome Recycling Factor Bound To The Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And Trna-Fmet (Part 1 Of 4). This File Contains The 30s Subunit, Mrna, P-Site Asl, E-Site Trna And Rrf For Molecule 1. gi|157836565|pdb|2V48|Y Chain Y, Structure Of The Ribosome Recycling Factor Bound To The Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And Trna-Fmet (Part 3 Of 4). This File Contains The 30s Subunit, Mrna, P-Site Asl, E-Site Trna And Rrf For Molecule 2. gi|158429965|pdb|2QBE|6 Chain 6, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Ribosome Recycling Factor (Rrf). This File Contains The 50s Subunit Of The First 70s Ribosome, With Rrf Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|158430018|pdb|2QBG|6 Chain 6, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Ribosome Recycling Factor (Rrf). This File Contains The 50s Subunit Of The Second 70s Ribosome, With Rrf Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|158430071|pdb|2QBI|6 Chain 6, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Gentamicin And Ribosome Recycling Factor (Rrf). This File Contains The 50s Subunit Of The First 70s Ribosome, With Gentamicin And Rrf Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|158430124|pdb|2QBK|6 Chain 6, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Gentamicin And Ribosome Recycling Factor (Rrf). This File Contains The 50s Subunit Of The Second 70s Ribosome, With Gentamicin And Rrf Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|158431424|pdb|2Z4L|6 Chain 6, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Paromomycin And Ribosome Recycling Factor (Rrf). This File Contains The 50s Subunit Of The First 70s Ribosome, With Paromomycin And Rrf Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|158431477|pdb|2Z4N|6 Chain 6, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Paromomycin And Ribosome Recycling Factor (Rrf). This File Contains The 50s Subunit Of The Second 70s Ribosome, With Paromomycin And Rrf Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|4589668|dbj|BAA76865.1| frr [Thermus thermophilus] gi|46196437|gb|AAS80854.1| ribosome recycling factor (rrf) [Thermus thermophilus HB27] gi|55772240|dbj|BAD70681.1| ribosome recycling factor (Rrf) [Thermus thermophilus HB8] Length = 185 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 78/174 (44%), Positives = 113/174 (64%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 + M ++ L+ ++ LRTGR +P++L +KVE YG+HVPLNQ+A VT +PR LVV Sbjct: 11 RSHMQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTAPDPRTLVVQS 70 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 WD+ + ++E+ I +S+LGLNP +G L I +P TEERR LV+ YAE+ ++++R Sbjct: 71 WDQNALKAIEKAIRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVRQYAEEGRVAIR 130 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 NIRR+ +D LKK K SED E +IQKITD I D E+K++EI+ Sbjct: 131 NIRREALDKLKKLAKELHLSEDETKRAEAEIQKITDEFIAKADQLAEKKEQEIL 184 >gi|259046749|ref|ZP_05737150.1| ribosome recycling factor [Granulicatella adiacens ATCC 49175] gi|259036645|gb|EEW37900.1| ribosome recycling factor [Granulicatella adiacens ATCC 49175] Length = 186 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 76/180 (42%), Positives = 123/180 (68%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + K+RM + L++++ ++R GR + S+LD ++VE YG+ P+NQ+A++TV E RML Sbjct: 7 LAHTKERMKKSEDALQRELGSIRAGRANASLLDRLEVEYYGALTPVNQLASITVPEARML 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK + +ER I S++G+ P +G V+R+ +P+ TEERR L K AE +K Sbjct: 67 LITPYDKSSLNDIERAILMSDIGITPTSDGSVIRLIIPQLTEERRKELAKQVGKEAENAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +SVRNIRRD +D KK+ K+ + +ED + +LE DIQK+TD ++KNID K+KE++ Sbjct: 127 VSVRNIRRDAIDQAKKAEKAKEITEDELHTLEKDIQKVTDDSVKNIDKLAATKEKELLEV 186 >gi|125973518|ref|YP_001037428.1| ribosome recycling factor [Clostridium thermocellum ATCC 27405] gi|190360240|sp|A3DE56|RRF_CLOTH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|125713743|gb|ABN52235.1| ribosome recycling factor [Clostridium thermocellum ATCC 27405] Length = 183 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 73/180 (40%), Positives = 123/180 (68%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 + +NI+++M T+S LK ++ T+R GR + ++LD + V+ YG P+NQ+ ++V EPR+ Sbjct: 3 EYKNIEEKMKKTVSVLKDELNTVRAGRANAAILDRITVDYYGVPTPINQLGTISVPEPRV 62 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 +V+ WD +++ +E+ I +S++G+NP +G+V+R+ P TEERR L K+A Y E + Sbjct: 63 IVIQPWDAQILKEIEKEIQKSDIGINPNNDGKVIRLVFPPLTEERRKELTKLAKKYGEDA 122 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 K+++R+IRRDG++ K +K+G+ +ED + S E DIQ +TD I ID E K+KEI+ Sbjct: 123 KVAIRSIRRDGIEKKKAMKKNGEITEDDLKSAEKDIQNLTDKYIAEIDKLIEIKEKEILE 182 >gi|56478854|ref|YP_160443.1| ribosome recycling factor [Aromatoleum aromaticum EbN1] gi|60390230|sp|Q5NZH2|RRF_AZOSE RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|56314897|emb|CAI09542.1| ribosome recycling factor [Aromatoleum aromaticum EbN1] Length = 185 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 78/174 (44%), Positives = 111/174 (63%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M +I LK D+ +RTGR +LD V VE YGS VP++QV+NVT+++ R + V VW+ Sbjct: 12 KMQKSIDVLKADLAKVRTGRAHTGLLDHVMVEYYGSMVPISQVSNVTLIDARTIGVQVWE 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K M+ VER I +S+LGLNP +G ++R+P+P TEERR L KV E +K+++RN+ Sbjct: 72 KPMMQKVERAIRDSDLGLNPANQGDIIRVPMPALTEERRRDLTKVVRHEGEAAKVAIRNL 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD HLK + K SED + DIQK+TD I ID +K++E+M Sbjct: 132 RRDANQHLKDAVKDKTISEDDDRRAQEDIQKLTDRNIAEIDKLLAQKEQELMQL 185 >gi|226940990|ref|YP_002796064.1| ribosome recycling factor [Laribacter hongkongensis HLHK9] gi|254809516|sp|C1D9F3|RRF_LARHH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226715917|gb|ACO75055.1| Frr [Laribacter hongkongensis HLHK9] Length = 185 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 77/172 (44%), Positives = 111/172 (64%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M TI K + +RTGR +LD + V+ YGS P+NQVANVT+++ R + V VW+ Sbjct: 12 KMQKTIEAFKHTLAKVRTGRAHAGLLDHITVDYYGSDTPINQVANVTLIDARTIGVQVWE 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K M A VE+ I +S+LGLNP+ G+V+R+P+P TEERR L KV AE ++++VRN+ Sbjct: 72 KNMAAKVEKAIRDSDLGLNPMSMGEVIRVPMPALTEERRRDLTKVVKGEAEDARVAVRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD + LK K +ED ++DIQK+TD + +D F EK+KE+M Sbjct: 132 RRDANNDLKTLLKDKDITEDEERRAQDDIQKLTDKYVAEVDKLFAEKEKELM 183 >gi|311030097|ref|ZP_07708187.1| ribosome recycling factor [Bacillus sp. m3-13] Length = 185 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 82/184 (44%), Positives = 121/184 (65%), Gaps = 2/184 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 NQVI KDRM + +++ T+R GR S ++LD V V+ YG+ P+NQ+A++ V Sbjct: 3 NQVI--TQTKDRMEKAVQAYSRELATIRAGRASAALLDKVTVDYYGAPTPVNQLASLNVP 60 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 E R+LVV +DK + +E+ I +++LGLNP +G V+RI +P TEERR LVK Sbjct: 61 EARLLVVQPYDKTSLGDIEKAIIKADLGLNPSNDGTVIRISIPALTEERRKELVKQIKKI 120 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 +E++K+ +RNIRRDG D LKK K+G+ +ED + +DIQK TD+ I +D+ +EK+K Sbjct: 121 SEEAKVGIRNIRRDGNDDLKKLEKNGEITEDELRGYTDDIQKQTDAFIAKVDTVTKEKEK 180 Query: 182 EIMH 185 EIM Sbjct: 181 EIME 184 >gi|261822596|ref|YP_003260702.1| ribosome recycling factor [Pectobacterium wasabiae WPP163] gi|261606609|gb|ACX89095.1| ribosome recycling factor [Pectobacterium wasabiae WPP163] Length = 185 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 80/174 (45%), Positives = 110/174 (63%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM + K + +RTGR SPS+LD ++VE YGS PL Q+ANV V + R L +SV+D Sbjct: 12 RMDKCVEAFKNQINRIRTGRASPSILDGIQVEYYGSATPLRQLANVVVEDSRTLAISVFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + + +VE+ I S+LGLNP G V+R+P+P TEERR L+KV AE+ +ISVRN+ Sbjct: 72 RSLGPAVEKAIMASDLGLNPSSAGTVIRVPLPPLTEERRKDLIKVVRGEAEQGRISVRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD D K K SED ++D+QK+TD+ IK +D EK+ E+M F Sbjct: 132 RRDANDKFKALLKDKAISEDEERRAQDDVQKLTDNFIKKVDVALAEKEAELMEF 185 >gi|90413532|ref|ZP_01221523.1| ribosome releasing factor [Photobacterium profundum 3TCK] gi|90325464|gb|EAS41947.1| ribosome releasing factor [Photobacterium profundum 3TCK] Length = 185 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 78/182 (42%), Positives = 121/182 (66%), Gaps = 1/182 (0%) Query: 6 DLQN-IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 ++QN ++RMG ++ LK ++ +RTGR PS+LD + VE YG++ PL Q+ANV + R Sbjct: 4 EIQNDAQERMGKSVDALKNQLVKIRTGRAHPSLLDTIYVEYYGANTPLKQLANVVAEDSR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 L ++V+D+E+ +E+ I S+LGLNP+ G V+R+P+P TEERR LVK+ AE+ Sbjct: 64 TLAITVFDRELTPKIEKAIMMSDLGLNPMSAGTVIRVPLPPLTEERRRDLVKIVRKEAEQ 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++++RNIRRD LK K + SED +++IQK+TD +KNI++ E K+KE+M Sbjct: 124 GRVAIRNIRRDANADLKALLKDKEISEDDDRRAQDEIQKLTDIAVKNIEAVLEVKEKELM 183 Query: 185 HF 186 Sbjct: 184 EV 185 >gi|37524676|ref|NP_928020.1| ribosome releasing factor [Photorhabdus luminescens subsp. laumondii TTO1] gi|39932036|sp|Q7N8P4|RRF_PHOLL RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|36784101|emb|CAE12970.1| ribosome releasing factor [Photorhabdus luminescens subsp. laumondii TTO1] Length = 185 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 78/179 (43%), Positives = 117/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ +DRM ++ LK + +RTGR SPS+LD + VE YG+ PL Q+ANV + R L Sbjct: 7 KDAQDRMEKSVEALKNQISKVRTGRASPSLLDGIIVEYYGAPTPLRQLANVIAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ M ++E+ I S+LGLNP G +R+P+P TEERR L+KV + AE+ ++ Sbjct: 67 ITVFDRTMTPAIEKAIMASDLGLNPSSAGTTIRVPLPPLTEERRKDLIKVVRSEAEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRNIRRD D +K K + SED ++DIQK+TD+ IK +D +K++E+M F Sbjct: 127 SVRNIRRDANDKIKALLKDKEISEDDERRAQDDIQKLTDNFIKKVDEALTKKEEELMEF 185 >gi|75764985|ref|ZP_00744310.1| Ribosome Recycling Factor (RRF) [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218898977|ref|YP_002447388.1| ribosome recycling factor [Bacillus cereus G9842] gi|228902327|ref|ZP_04066484.1| Ribosome-recycling factor [Bacillus thuringiensis IBL 4222] gi|228909648|ref|ZP_04073471.1| Ribosome-recycling factor [Bacillus thuringiensis IBL 200] gi|228940912|ref|ZP_04103471.1| Ribosome-recycling factor [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973841|ref|ZP_04134417.1| Ribosome-recycling factor [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980430|ref|ZP_04140740.1| Ribosome-recycling factor [Bacillus thuringiensis Bt407] gi|229031454|ref|ZP_04187454.1| Ribosome-recycling factor [Bacillus cereus AH1271] gi|229098293|ref|ZP_04229240.1| Ribosome-recycling factor [Bacillus cereus Rock3-29] gi|229104386|ref|ZP_04235055.1| Ribosome-recycling factor [Bacillus cereus Rock3-28] gi|229117310|ref|ZP_04246688.1| Ribosome-recycling factor [Bacillus cereus Rock1-3] gi|226703252|sp|B7IUI3|RRF_BACC2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|74487527|gb|EAO51418.1| Ribosome Recycling Factor (RRF) [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218541328|gb|ACK93722.1| ribosome recycling factor [Bacillus cereus G9842] gi|228666210|gb|EEL21674.1| Ribosome-recycling factor [Bacillus cereus Rock1-3] gi|228679084|gb|EEL33292.1| Ribosome-recycling factor [Bacillus cereus Rock3-28] gi|228685191|gb|EEL39122.1| Ribosome-recycling factor [Bacillus cereus Rock3-29] gi|228729743|gb|EEL80723.1| Ribosome-recycling factor [Bacillus cereus AH1271] gi|228779250|gb|EEM27507.1| Ribosome-recycling factor [Bacillus thuringiensis Bt407] gi|228785866|gb|EEM33869.1| Ribosome-recycling factor [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818748|gb|EEM64814.1| Ribosome-recycling factor [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228849937|gb|EEM94768.1| Ribosome-recycling factor [Bacillus thuringiensis IBL 200] gi|228857296|gb|EEN01799.1| Ribosome-recycling factor [Bacillus thuringiensis IBL 4222] gi|326941592|gb|AEA17488.1| ribosome recycling factor [Bacillus thuringiensis serovar chinensis CT-43] Length = 185 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 79/179 (44%), Positives = 119/179 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ ++M ++ +++ T+R GR S S+LD V+V+ YG+ P+ Q+AN+TV E R+L Sbjct: 6 LKSSNEKMEKAVAAYSRELATVRAGRASSSVLDKVQVDYYGAPTPVVQLANITVPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +DK + +E+ I +++LGLNP +G V+RI P TEERR LVKV YAE++K Sbjct: 66 VIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRN+RRDG D LKK K+G+ +ED + DIQK TD I +D + K+KEIM Sbjct: 126 VAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIME 184 >gi|89098609|ref|ZP_01171491.1| ribosome recycling factor [Bacillus sp. NRRL B-14911] gi|89086571|gb|EAR65690.1| ribosome recycling factor [Bacillus sp. NRRL B-14911] Length = 185 Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 76/180 (42%), Positives = 120/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + N K+RM I +++ ++R GR S S+LD + V+ YG+ P+NQ+A ++V E R+L Sbjct: 6 ISNSKERMTKAIQAYSRELASIRAGRASASLLDRITVDYYGAPTPVNQLAGISVPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +DK ++ +E+ I +S+LGLNP +G +LR+ +P TEERR LVKV +E +K Sbjct: 66 VIQPYDKSILGEIEKAIIKSDLGLNPTNDGNLLRLAIPALTEERRKELVKVVKKESEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD D LKK K+G+ +ED + +DIQK+TD I +DS ++K+KEI+ Sbjct: 126 VAIRNIRRDANDDLKKLEKNGEITEDDLRGYSDDIQKMTDEHITKVDSITKDKEKEILEV 185 >gi|117619336|ref|YP_855717.1| ribosome recycling factor [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|166230407|sp|A0KHG6|RRF_AERHH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|117560743|gb|ABK37691.1| ribosome recycling factor [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 185 Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 81/178 (45%), Positives = 113/178 (63%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 + KDRM ++ LK M +RTGR PS+LD ++VE YG+ PL Q+ANV + R L + Sbjct: 8 DAKDRMAKSVESLKTQMSKIRTGRAHPSLLDGIQVEYYGAATPLKQLANVVAEDARTLSI 67 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 S++D+ M+ +VE+ I S+LGLNP GQ LR+P+P TEERR L K+ A AE ++++ Sbjct: 68 SIFDRSMIQAVEKAILTSDLGLNPSSNGQTLRVPLPPLTEERRRDLTKIVRAEAEGARVA 127 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 VRNIRRD LK K + SED + +IQK+TDS IK +D K+KE+M Sbjct: 128 VRNIRRDANADLKALLKDKEISEDDDRRAQEEIQKLTDSFIKLVDEALALKEKELMEI 185 >gi|172040501|ref|YP_001800215.1| ribosome recycling factor [Corynebacterium urealyticum DSM 7109] gi|238057837|sp|B1VG92|RRF_CORU7 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|171851805|emb|CAQ04781.1| unnamed protein product [Corynebacterium urealyticum DSM 7109] Length = 185 Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 72/179 (40%), Positives = 119/179 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++RM ++ F ++D+ T+RTGR +P+M + V E YG P+ Q+A ++V E RM+ Sbjct: 6 LLECEERMTSSVEFAREDLTTIRTGRANPAMFNSVIAEYYGVPTPITQMATISVPEARMM 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +++ + +E I S+LG+NP +GQVLR+ +P+ TEERR +V+ A + E +K Sbjct: 66 LIKPYEQSQIQVIENAIRNSDLGVNPTNDGQVLRVTIPQLTEERRREMVRQAKSKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 I++RNIRR GM+ L K +K G A ED V + EN+++KIT + +K +D E K++E+M Sbjct: 126 IAIRNIRRHGMEQLAKIQKDGDAGEDEVRASENELEKITSNYVKQVDELVERKEEELME 184 >gi|152999980|ref|YP_001365661.1| ribosome recycling factor [Shewanella baltica OS185] gi|160874601|ref|YP_001553917.1| ribosome recycling factor [Shewanella baltica OS195] gi|166231225|sp|A6WLA9|RRF_SHEB8 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|189044074|sp|A9KUK8|RRF_SHEB9 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|151364598|gb|ABS07598.1| ribosome recycling factor [Shewanella baltica OS185] gi|160860123|gb|ABX48657.1| ribosome recycling factor [Shewanella baltica OS195] gi|315266842|gb|ADT93695.1| ribosome recycling factor [Shewanella baltica OS678] Length = 185 Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 80/183 (43%), Positives = 114/183 (62%), Gaps = 4/183 (2%) Query: 7 LQNIK----DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLE 62 ++NIK +RMG + K M +RTGR PS+LD ++V YG+ PLNQVANV V + Sbjct: 2 IENIKKDAQERMGKCVDATKNQMAKVRTGRAHPSLLDSIQVSYYGTMTPLNQVANVGVED 61 Query: 63 PRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 R L V+V+D+ + +VE+ I S+LGLNP+ G LRIP+P TEERR +KV A Sbjct: 62 SRTLSVTVFDRSAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVVRNEA 121 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 E +I++RN+RRD + +KK K+ +ED V E ++QK TD+ IK +D K+ E Sbjct: 122 ENGRIAIRNVRRDAISEVKKLEKAKACTEDDVRRSEEEVQKFTDAHIKKVDEILAAKEIE 181 Query: 183 IMH 185 +M Sbjct: 182 LME 184 >gi|309782134|ref|ZP_07676864.1| ribosome recycling factor [Ralstonia sp. 5_7_47FAA] gi|308919200|gb|EFP64867.1| ribosome recycling factor [Ralstonia sp. 5_7_47FAA] Length = 186 Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 81/177 (45%), Positives = 113/177 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N + +M +I LK D+ +RTGR +LD V+V+ YGS VP++QVANVT+++ R + Sbjct: 8 KNAEQKMQKSIEALKTDLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVANVTLVDARTIG 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K+MV +VE+ I E++LGLNP G ++R+P P TEERR L KV E +K+ Sbjct: 68 VQPWEKKMVQAVEKAIREADLGLNPATMGDIIRVPTPALTEERRKELTKVVKGEGEDAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +VRN+RRD + LKK K SED +DIQK+TD + ID EK KEIM Sbjct: 128 AVRNLRRDANEQLKKLVKDKAISEDDERRGGDDIQKLTDKFVAEIDKLVAEKDKEIM 184 >gi|241662946|ref|YP_002981306.1| ribosome recycling factor [Ralstonia pickettii 12D] gi|240864973|gb|ACS62634.1| ribosome recycling factor [Ralstonia pickettii 12D] Length = 186 Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 81/177 (45%), Positives = 113/177 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N + +M +I LK D+ +RTGR +LD V+V+ YGS VP++QVANVT+++ R + Sbjct: 8 KNAEQKMQKSIDALKTDLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVANVTLVDARTIG 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K+MV +VE+ I E++LGLNP G ++R+P P TEERR L KV E +K+ Sbjct: 68 VQPWEKKMVQAVEKAIREADLGLNPATMGDIIRVPTPALTEERRKELTKVVKGEGEDAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +VRN+RRD + LKK K SED +DIQK+TD + ID EK KEIM Sbjct: 128 AVRNLRRDANEQLKKLVKDKAISEDDERRGGDDIQKLTDKFVAEIDKLVAEKDKEIM 184 >gi|227114690|ref|ZP_03828346.1| ribosome recycling factor [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 185 Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 79/174 (45%), Positives = 110/174 (63%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM + K + +RTGR SPS+LD ++VE YGS PL Q+AN+ V + R L +SV+D Sbjct: 12 RMDKCVEAFKNQINRIRTGRASPSILDGIQVEYYGSATPLRQLANIVVEDSRTLAISVFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + + +VE+ I S+LGLNP G V+R+P+P TEERR L+KV AE+ +ISVRN+ Sbjct: 72 RSLGPAVEKAIMASDLGLNPSSAGTVIRVPLPPLTEERRKDLIKVVRGEAEQGRISVRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD D K K SED ++D+QK+TD+ IK +D EK+ E+M F Sbjct: 132 RRDANDKFKALLKDKAISEDEERRAQDDVQKLTDNFIKKVDVALAEKEAELMEF 185 >gi|283851250|ref|ZP_06368533.1| ribosome recycling factor [Desulfovibrio sp. FW1012B] gi|283573419|gb|EFC21396.1| ribosome recycling factor [Desulfovibrio sp. FW1012B] Length = 184 Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 78/180 (43%), Positives = 114/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +DRM +S L K+ LRTGR + S+LD V+VE YGS PL Q+A+V+ + R + Sbjct: 5 LTEAEDRMKKALSVLDKEFARLRTGRATTSLLDGVRVEYYGSVTPLEQIASVSTPDSRTI 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WD++ VER I +S+LGL P+ +G+++RI +P TE+RR L KVA YAE++K Sbjct: 65 TIQPWDRKAFNDVERAILKSDLGLTPVNDGKIIRISIPPLTEDRRKDLAKVAKKYAEEAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RN+RRD + LKK + SED + D+QK+TD I D F +K+KEIM Sbjct: 125 VAIRNVRRDANEALKKKKNDKAISEDDQHKGQEDVQKLTDGYIAKTDEAFSKKEKEIMEI 184 >gi|163791595|ref|ZP_02185996.1| ribosome recycling factor [Carnobacterium sp. AT7] gi|159873144|gb|EDP67247.1| ribosome recycling factor [Carnobacterium sp. AT7] Length = 185 Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 75/178 (42%), Positives = 124/178 (69%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 LQ ++M T S L++++ T+R GR + +LD + V YG+ PL Q+A ++V EPR+L Sbjct: 6 LQTTNEKMVKTESALQRELGTIRAGRANAGLLDRINVVYYGAPTPLKQLAQISVPEPRVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK ++ +E+ I +S+LG++P +G V+R+ +P+ TEERR L K AE +K Sbjct: 66 MITPFDKTSISDIEKSIMQSDLGISPANDGNVIRLVIPQLTEERRKELAKKVGKEAENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +SVRNIRR+ MD LKK+ K+ + ++D + + E DIQKIT+ ++KNID+ EK+KE++ Sbjct: 126 VSVRNIRREAMDELKKAEKNNEITQDDLRTFEEDIQKITNESVKNIDAIAAEKEKELL 183 >gi|290473660|ref|YP_003466532.1| ribosome releasing factor [Xenorhabdus bovienii SS-2004] gi|289172965|emb|CBJ79736.1| ribosome releasing factor [Xenorhabdus bovienii SS-2004] Length = 205 Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 78/179 (43%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ +DRM ++ LK + +RTGR SPS+LD + V+ YGS PL Q+A+V + R L Sbjct: 27 KDAQDRMEKSVEALKNQISKIRTGRASPSLLDGISVDYYGSATPLRQIASVVAEDARTLA 86 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ M ++E+ I S+LGLNP G ++R+P+P TEERR L+KV AE+ ++ Sbjct: 87 ITVFDRSMTPAIEKAIMASDLGLNPSSAGTIIRVPLPALTEERRKDLIKVVRGDAEQGRV 146 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRNIRRD D +K K + SED +++IQK+TDS IK ID K+ E+M F Sbjct: 147 SVRNIRRDANDKVKALLKDKEISEDEERRSQDEIQKLTDSFIKKIDEALASKETELMDF 205 >gi|308048672|ref|YP_003912238.1| ribosome recycling factor [Ferrimonas balearica DSM 9799] gi|307630862|gb|ADN75164.1| ribosome recycling factor [Ferrimonas balearica DSM 9799] Length = 185 Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 82/179 (45%), Positives = 112/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ KDRM ++ + M +RTGR PS+LD + V YG PL QV NVT + R L Sbjct: 7 KDAKDRMVKSVEATQTQMSKVRTGRAHPSLLDSIMVSYYGVDTPLKQVGNVTTEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+V+DK M+ +VE+ I S+LGLNP G ++RIP+P TEERR LVKV A AE ++ Sbjct: 67 VTVFDKSMIQAVEKAIMASDLGLNPNSAGTMIRIPLPPLTEERRRDLVKVVRAEAEHGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD +K K + SED E+DIQK+TD +K ID+ +K+KE+M Sbjct: 127 AVRNIRRDANSDIKALEKEKEISEDDARRGEDDIQKLTDQYVKQIDAILADKEKELMEV 185 >gi|42782915|ref|NP_980162.1| ribosome recycling factor [Bacillus cereus ATCC 10987] gi|206978510|ref|ZP_03239367.1| ribosome recycling factor [Bacillus cereus H3081.97] gi|217961244|ref|YP_002339812.1| ribosome recycling factor [Bacillus cereus AH187] gi|229140465|ref|ZP_04269020.1| Ribosome-recycling factor [Bacillus cereus BDRD-ST26] gi|229197934|ref|ZP_04324650.1| Ribosome-recycling factor [Bacillus cereus m1293] gi|60390260|sp|Q732P5|RRF_BACC1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226703254|sp|B7HLF7|RRF_BACC7 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|42738842|gb|AAS42770.1| ribosome recycling factor [Bacillus cereus ATCC 10987] gi|206743279|gb|EDZ54729.1| ribosome recycling factor [Bacillus cereus H3081.97] gi|217063331|gb|ACJ77581.1| ribosome recycling factor [Bacillus cereus AH187] gi|228585652|gb|EEK43754.1| Ribosome-recycling factor [Bacillus cereus m1293] gi|228643026|gb|EEK99302.1| Ribosome-recycling factor [Bacillus cereus BDRD-ST26] gi|324327721|gb|ADY22981.1| ribosome recycling factor [Bacillus thuringiensis serovar finitimus YBT-020] Length = 185 Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 78/179 (43%), Positives = 119/179 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ ++M ++ +++ T+R GR + S+LD V+V+ YG+ P+ Q+AN+TV E R+L Sbjct: 6 LKSANEKMEKAVAAYSRELATVRAGRANASVLDKVQVDYYGAPTPVVQLANITVPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +DK + +E+ I +++LGLNP +G V+RI P TEERR LVKV YAE++K Sbjct: 66 VIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRN+RRDG D LKK K+G+ +ED + DIQK TD I +D + K+KEIM Sbjct: 126 VAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIME 184 >gi|148380389|ref|YP_001254930.1| ribosome recycling factor [Clostridium botulinum A str. ATCC 3502] gi|153933414|ref|YP_001384607.1| ribosome recycling factor [Clostridium botulinum A str. ATCC 19397] gi|153934708|ref|YP_001388123.1| ribosome recycling factor [Clostridium botulinum A str. Hall] gi|166230778|sp|A7FPZ5|RRF_CLOB1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166230779|sp|A5I4K9|RRF_CLOBH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|148289873|emb|CAL83981.1| ribosome recycling factor [Clostridium botulinum A str. ATCC 3502] gi|152929458|gb|ABS34958.1| ribosome recycling factor [Clostridium botulinum A str. ATCC 19397] gi|152930622|gb|ABS36121.1| ribosome recycling factor [Clostridium botulinum A str. Hall] Length = 184 Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 78/180 (43%), Positives = 120/180 (66%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ ++MG TI LKK++ +++ GR +P+MLD ++ E YGS PLNQ+ N++V E R+L Sbjct: 6 LKKADEKMGKTIVALKKELASMKAGRANPAMLDRIEAEYYGSMTPLNQLGNISVPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WDK ++++E+ I +S+LGLNP +G V+R+ +PE TEE R +VK E++K Sbjct: 66 LIQPWDKGALSAIEKAILKSDLGLNPSNDGTVIRLVIPELTEETRKNIVKTVKKTGEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++R+IRRD D +K +K SED + E+DIQK TD IK IDS K+KEI+ Sbjct: 126 VAIRSIRRDCNDDVKNLKKDD-VSEDDIKKAEDDIQKKTDKYIKEIDSIISAKEKEILSI 184 >gi|284008517|emb|CBA75037.1| ribosome recycling factor [Arsenophonus nasoniae] Length = 185 Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 77/179 (43%), Positives = 118/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK + +RTGR SPS+LD + VE YG+ PL Q+AN+T + R L Sbjct: 7 KDAQERMEKSVEALKSQISKVRTGRASPSLLDGIVVEYYGAATPLRQLANITAEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ + +VE+ I S+LGLNP G ++R+P+P TEERR L+KV AE+ ++ Sbjct: 67 ITVFDRTLTPAVEKAIMASDLGLNPSSAGTIIRVPLPPLTEERRKDLIKVVRNDAEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRN RRD D +K K + SED +++IQK+TD+ IK +D E+K+KE+M F Sbjct: 127 SVRNARRDANDKIKALLKDKEISEDDERRAQDEIQKLTDNFIKKVDEALEQKEKELMEF 185 >gi|260583805|ref|ZP_05851553.1| ribosome recycling factor [Granulicatella elegans ATCC 700633] gi|260158431|gb|EEW93499.1| ribosome recycling factor [Granulicatella elegans ATCC 700633] Length = 186 Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 78/180 (43%), Positives = 122/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + N K+RM T L++++ +R GR + S+LD ++VE YG P+NQ+A+VTV E RML Sbjct: 7 IANAKERMKKTEDALQRELGGIRAGRANASLLDRLQVEYYGVPTPVNQLASVTVPEARML 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK + +ER I S++G+ P +G V+R+ +P+ TEERR L K AE +K Sbjct: 67 LITPYDKSSLQDIERAILMSDIGITPTNDGSVVRLVIPQLTEERRKELAKQVGKEAEGAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +SVRNIRRD ++HLKK+ K+ + +ED + E DIQK+TD ++KNID + K+KE++ Sbjct: 127 VSVRNIRRDAIEHLKKAEKNKEITEDDLRGYEKDIQKLTDDSVKNIDHLAQVKEKELLEV 186 >gi|237808853|ref|YP_002893293.1| ribosome recycling factor [Tolumonas auensis DSM 9187] gi|259494557|sp|C4L861|RRF_TOLAT RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|237501114|gb|ACQ93707.1| ribosome recycling factor [Tolumonas auensis DSM 9187] Length = 185 Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 81/178 (45%), Positives = 112/178 (62%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 + KDRM ++ LK M +RTGR P++LD + VE YGS PL QVANV + R L V Sbjct: 8 DAKDRMTKSVDSLKSHMSKIRTGRAQPALLDGIMVEYYGSATPLRQVANVVAEDSRTLAV 67 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 SV+D+ M+ +VE+ I S+LGLNP G +R+P+P TEERR L+K+ A AE++++S Sbjct: 68 SVFDRSMIQAVEKAIMTSDLGLNPSSAGTTIRVPLPALTEERRKDLIKLVRAEAEQARVS 127 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 VRN+RRD LK K SED + +IQK+TDS +K +D K+KE+M Sbjct: 128 VRNVRRDCNADLKALLKDKDISEDDDRRAQEEIQKLTDSFVKLVDDLLAAKEKELMEI 185 >gi|241890096|ref|ZP_04777394.1| ribosome recycling factor [Gemella haemolysans ATCC 10379] gi|241863718|gb|EER68102.1| ribosome recycling factor [Gemella haemolysans ATCC 10379] Length = 185 Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 75/179 (41%), Positives = 120/179 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + N+ +RM I+ L++++ ++R G+ S ++LD + V+ YG P+NQVA V+V EP+ML Sbjct: 6 MNNLNERMEKAIASLRRELASIRAGKASAAVLDRLTVDYYGVPTPINQVAGVSVPEPKML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+S ++K ++ +E+ I S+LGLNP +G V+RI P TEERR L K+ +E +K Sbjct: 66 VISPYEKTLLGDIEKAIQASDLGLNPANDGTVIRIVFPALTEERRKELAKLVGKESEGAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRN+RRD MD +KK KS + +ED + +DIQK+TD + ID +EK++E+M Sbjct: 126 VAVRNVRRDAMDAMKKLEKSSQITEDDLKGYSDDIQKVTDKFVAEIDKVTKEKQEELMS 184 >gi|229019019|ref|ZP_04175860.1| Ribosome-recycling factor [Bacillus cereus AH1273] gi|229025264|ref|ZP_04181684.1| Ribosome-recycling factor [Bacillus cereus AH1272] gi|228736017|gb|EEL86592.1| Ribosome-recycling factor [Bacillus cereus AH1272] gi|228742259|gb|EEL92418.1| Ribosome-recycling factor [Bacillus cereus AH1273] Length = 185 Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 79/179 (44%), Positives = 118/179 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ ++M ++ +++ T+R GR S S+LD V+V+ YG+ P+ Q+AN+TV E R+L Sbjct: 6 LKSSNEKMEKAVAAYSRELATVRAGRASSSVLDKVQVDYYGAPTPVVQLANITVPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +DK + +E+ I +++LGLNP +G V+RI P TEERR LVKV YAE++K Sbjct: 66 VIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRN+RRDG D LKK K+G +ED + DIQK TD I +D + K+KEIM Sbjct: 126 VAVRNVRRDGNDDLKKLEKAGDITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIME 184 >gi|297568948|ref|YP_003690292.1| ribosome recycling factor [Desulfurivibrio alkaliphilus AHT2] gi|296924863|gb|ADH85673.1| ribosome recycling factor [Desulfurivibrio alkaliphilus AHT2] Length = 184 Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 80/185 (43%), Positives = 125/185 (67%), Gaps = 2/185 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M++VI + D+M +I ++++ +RTGR S S+LD VKVEAYGS +PLNQVA +T+ Sbjct: 1 MDEVI--LEMSDKMEKSIEAYRRELSRIRTGRASLSLLDGVKVEAYGSSMPLNQVATLTI 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E RM+V+ WD + V+++E+ IH S++GL P +G+V+R+ +P+ TEERR +VK Sbjct: 59 PESRMIVIQPWDAQQVSAIEKAIHASDIGLTPNSDGKVIRLMIPQLTEERRKEMVKQVKK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 +E+ +++VRN RR+ +D LKK + + ED L+++ Q+ TD IK IDS EK+ Sbjct: 119 ISEEYRVAVRNSRREAIDTLKKLKNDKQLPEDDFFRLQDEAQQETDRFIKQIDSIMAEKE 178 Query: 181 KEIMH 185 KE+M Sbjct: 179 KEMME 183 >gi|256847041|ref|ZP_05552487.1| ribosome recycling factor [Lactobacillus coleohominis 101-4-CHN] gi|256715705|gb|EEU30680.1| ribosome recycling factor [Lactobacillus coleohominis 101-4-CHN] Length = 186 Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 78/178 (43%), Positives = 122/178 (68%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L N K++M + LK+ + +R GR + S+L+ VKV+ YG+ PLNQ+A++TV E R L Sbjct: 7 LANAKEKMAKSGEALKRTLADIRAGRANASILNPVKVDYYGALTPLNQMASITVPEARQL 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +VS +DK + +ER I+E++LGL P +G+ +RI +P+ TEERR LVK A E +K Sbjct: 67 LVSPYDKSTLKDIERAIYEADLGLTPQNDGEAIRIMIPQLTEERRKELVKDVKAELENAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++VRN+RR+ MD LKK K G ++D +LE+ +QK TD+ IKN+++ ++K+ E+M Sbjct: 127 VAVRNVRREAMDDLKKGNKDGDFNDDEFHNLEDQVQKETDAGIKNLEAIAKDKEDELM 184 >gi|289578399|ref|YP_003477026.1| ribosome recycling factor [Thermoanaerobacter italicus Ab9] gi|297544675|ref|YP_003676977.1| ribosome recycling factor [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528112|gb|ADD02464.1| ribosome recycling factor [Thermoanaerobacter italicus Ab9] gi|296842450|gb|ADH60966.1| ribosome recycling factor [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 184 Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 80/180 (44%), Positives = 122/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ +++M ++S LK ++ +R GR +P++LD + V+ YG+ PLN++A +T E R+L Sbjct: 5 LKASEEKMQKSLSVLKSELAAIRAGRANPALLDRIMVDYYGTPTPLNRLATITAPEARVL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV WD ++ +E+ I +S+LG+NP+ +G+VLR+ PE TEERR LVK+ + AE++K Sbjct: 65 VVQPWDVSKISDIEKAIQKSDLGINPVSDGKVLRLVFPELTEERRKELVKLVYKKAEEAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VR IRRD D +KK K+G+ SED E +IQK+TD IK ID E K+KEIM Sbjct: 125 VAVRQIRRDANDTVKKMEKNGEISEDERKKREEEIQKLTDKYIKEIDKIAETKEKEIMEI 184 >gi|206889935|ref|YP_002249340.1| ribosome recycling factor [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741873|gb|ACI20930.1| ribosome recycling factor [Thermodesulfovibrio yellowstonii DSM 11347] Length = 185 Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 81/174 (46%), Positives = 122/174 (70%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 ++M + KKD+ T RTGR S +LD +KVE YGS VPLNQVA + + EPRM+ + W Sbjct: 11 EKMNQALEVFKKDLSTFRTGRASLGILDNIKVEYYGSTVPLNQVATLGIPEPRMITIQPW 70 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 +++M++ +ER I +S+LGL PI +G++++I +P TEERR LVKV E++++++RN Sbjct: 71 EQKMISEIERAIMKSDLGLTPINDGKMIKIVIPPLTEERRKQLVKVVRKRTEEARVAIRN 130 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 IRRD ++ +KK+ K K SED ++ +IQKIT+S I+ ID E+K+KEIM Sbjct: 131 IRRDIIEEIKKAEKEKKLSEDESRRIQEEIQKITNSFIEKIDHALEQKEKEIME 184 >gi|50119974|ref|YP_049141.1| ribosome recycling factor [Pectobacterium atrosepticum SCRI1043] gi|60390249|sp|Q6D8E0|RRF_ERWCT RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|49610500|emb|CAG73945.1| ribosome recycling factor [Pectobacterium atrosepticum SCRI1043] Length = 185 Score = 158 bits (400), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 80/174 (45%), Positives = 109/174 (62%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM + K + +RTGR SPS+LD + VE YGS PL Q+ANV V + R L +SV+D Sbjct: 12 RMDKCVEAFKNQINRIRTGRASPSILDGIHVEYYGSATPLRQLANVVVEDSRTLAISVFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + + +VE+ I S+LGLNP G V+R+P+P TEERR L+KV AE+ +ISVRN+ Sbjct: 72 RSLSPAVEKAIMASDLGLNPSSAGTVIRVPLPPLTEERRKDLIKVVRGEAEQGRISVRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD D K K SED ++D+QK+TD+ IK +D EK+ E+M F Sbjct: 132 RRDANDKFKALLKDKAISEDEERRAQDDVQKLTDNFIKKVDVALAEKEAELMEF 185 >gi|157376290|ref|YP_001474890.1| ribosome recycling factor [Shewanella sediminis HAW-EB3] gi|189044077|sp|A8FY39|RRF_SHESH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|157318664|gb|ABV37762.1| ribosome recycling factor [Shewanella sediminis HAW-EB3] Length = 185 Score = 158 bits (400), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 80/177 (45%), Positives = 109/177 (61%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 + K RM + K M +RTGR PS+LD +KV YGS PL QV NV++ + R L V Sbjct: 8 DAKSRMEKCVESTKTQMAKVRTGRAHPSLLDTIKVSYYGSMTPLKQVGNVSIEDSRTLAV 67 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 +V+D M+ +VE+ I S+LGLNP+ G +RIP+P TEERR L+KV A AE +I+ Sbjct: 68 NVFDSTMIQAVEKAIMSSDLGLNPMSAGATIRIPLPALTEERRKDLIKVVRAEAENGRIA 127 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 VRN+RRD +K K + +ED V E+D+QK TD+ IK ID K+ E+M Sbjct: 128 VRNVRRDANSDVKSLEKEKECTEDDVRRTEDDVQKFTDAHIKLIDEILTAKEAELME 184 >gi|168184638|ref|ZP_02619302.1| ribosome recycling factor [Clostridium botulinum Bf] gi|170756757|ref|YP_001781975.1| ribosome recycling factor [Clostridium botulinum B1 str. Okra] gi|226949785|ref|YP_002804876.1| ribosome recycling factor [Clostridium botulinum A2 str. Kyoto] gi|237795867|ref|YP_002863419.1| ribosome recycling factor [Clostridium botulinum Ba4 str. 657] gi|229564223|sp|B1II63|RRF_CLOBK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|254809503|sp|C1FSK2|RRF_CLOBJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|259494535|sp|C3L0C9|RRF_CLOB6 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|169121969|gb|ACA45805.1| ribosome recycling factor [Clostridium botulinum B1 str. Okra] gi|182672259|gb|EDT84220.1| ribosome recycling factor [Clostridium botulinum Bf] gi|226841674|gb|ACO84340.1| ribosome recycling factor [Clostridium botulinum A2 str. Kyoto] gi|229263177|gb|ACQ54210.1| ribosome recycling factor [Clostridium botulinum Ba4 str. 657] gi|322806698|emb|CBZ04267.1| ribosome recycling factor [Clostridium botulinum H04402 065] Length = 184 Score = 158 bits (400), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 77/180 (42%), Positives = 120/180 (66%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ ++MG TI LK+++ +++ GR +P+MLD ++ E YGS PLNQ+ N++V E R+L Sbjct: 6 LKKADEKMGKTIVALKRELASMKAGRANPAMLDRIEAEYYGSMTPLNQLGNISVPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WDK ++++E+ I +S+LGLNP +G V+R+ +PE TEE R +VK E++K Sbjct: 66 LIQPWDKSALSAIEKAILKSDLGLNPSNDGTVIRLVIPELTEETRKNIVKTVKKTGEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++R+IRRD D +K +K SED + E+DIQK TD IK IDS K+KEI+ Sbjct: 126 VAIRSIRRDCNDDVKNLKKDD-VSEDDIKKAEDDIQKKTDKYIKEIDSIISAKEKEILSI 184 >gi|220931612|ref|YP_002508520.1| ribosome recycling factor [Halothermothrix orenii H 168] gi|254809515|sp|B8CW56|RRF_HALOH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|219992922|gb|ACL69525.1| ribosome recycling factor [Halothermothrix orenii H 168] Length = 185 Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 79/179 (44%), Positives = 117/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N K +M + K D+ T+RTGR PS+++ + V+ YG+ P+ Q+A V E R LV Sbjct: 7 KNAKQKMEKVLEATKHDLNTVRTGRARPSLVENIMVDYYGTQTPIQQMAKVVAPEARQLV 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + WDK ++ S+E+ I +SNLGLNP +G V+RI +P+ TEERR LVKVAH AEK +I Sbjct: 67 IEPWDKSVIESIEKAILKSNLGLNPSNDGNVIRINIPQLTEERRKELVKVAHEKAEKGRI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRR+ D LK+ K+ + SED + IQ++TD+ I ID E+K+++IM Sbjct: 127 AIRNIRREANDELKEMEKNSEISEDNYHRGLDMIQELTDTYIDKIDKMLEDKEQDIMEV 185 >gi|119898197|ref|YP_933410.1| ribosome recycling factor [Azoarcus sp. BH72] gi|166230409|sp|A1K6R8|RRF_AZOSB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|119670610|emb|CAL94523.1| Frr protein [Azoarcus sp. BH72] Length = 185 Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 76/174 (43%), Positives = 110/174 (63%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M +I LK D+ +RTGR +LD V VE YGS VP+NQVAN+T+++ R + V W+ Sbjct: 12 KMQKSIDALKTDLAKIRTGRAHTGLLDHVMVEYYGSMVPINQVANITLIDARTIGVQTWE 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K M+ VE+ I + +LGLNP G+++R+P+P TEERR L KV E +K++VRN+ Sbjct: 72 KPMLGKVEKAIRDCDLGLNPANMGEIIRVPMPALTEERRRDLTKVVRQEGETAKVAVRNL 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD HLK + K SED ++DIQK+TD + ID +K++E+M Sbjct: 132 RRDANQHLKDAVKDKTISEDDERRSQDDIQKLTDKYVAEIDKLLAQKEQELMQI 185 >gi|319762178|ref|YP_004126115.1| ribosome recycling factor [Alicycliphilus denitrificans BC] gi|330826010|ref|YP_004389313.1| ribosome recycling factor [Alicycliphilus denitrificans K601] gi|317116739|gb|ADU99227.1| ribosome recycling factor [Alicycliphilus denitrificans BC] gi|329311382|gb|AEB85797.1| ribosome recycling factor [Alicycliphilus denitrificans K601] Length = 186 Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 79/179 (44%), Positives = 117/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N+ +M +I+ LK ++ +RTGR +P++LD + VE YGS VPL+QVANV++L+ R + Sbjct: 8 KNLDAKMDQSIAALKNNLSKVRTGRANPALLDSIHVEYYGSMVPLSQVANVSLLDARTIS 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K M A VE+ I ES+LGLNP G ++R+P+P +EERR + K+A E +K+ Sbjct: 68 VQPWEKNMGAKVEKAIRESDLGLNPASMGDLIRVPMPPMSEERRKEMTKLARNEGENAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD + +KK K ASED E DIQK TD I ID+ K+++I+ Sbjct: 128 AVRNLRRDANEAVKKLVKEKLASEDEQKRAEADIQKTTDKHIAEIDALVAAKEQDILAI 186 >gi|30021912|ref|NP_833543.1| ribosome recycling factor [Bacillus cereus ATCC 14579] gi|47569102|ref|ZP_00239791.1| ribosome recycling factor [Bacillus cereus G9241] gi|206972656|ref|ZP_03233597.1| ribosome recycling factor [Bacillus cereus AH1134] gi|218234587|ref|YP_002368625.1| ribosome recycling factor [Bacillus cereus B4264] gi|228922578|ref|ZP_04085878.1| Ribosome-recycling factor [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228954100|ref|ZP_04116129.1| Ribosome-recycling factor [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228960040|ref|ZP_04121704.1| Ribosome-recycling factor [Bacillus thuringiensis serovar pakistani str. T13001] gi|228986967|ref|ZP_04147093.1| Ribosome-recycling factor [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229047510|ref|ZP_04193100.1| Ribosome-recycling factor [Bacillus cereus AH676] gi|229071322|ref|ZP_04204545.1| Ribosome-recycling factor [Bacillus cereus F65185] gi|229081079|ref|ZP_04213589.1| Ribosome-recycling factor [Bacillus cereus Rock4-2] gi|229111295|ref|ZP_04240848.1| Ribosome-recycling factor [Bacillus cereus Rock1-15] gi|229129100|ref|ZP_04258073.1| Ribosome-recycling factor [Bacillus cereus BDRD-Cer4] gi|229146395|ref|ZP_04274766.1| Ribosome-recycling factor [Bacillus cereus BDRD-ST24] gi|229152023|ref|ZP_04280218.1| Ribosome-recycling factor [Bacillus cereus m1550] gi|229157400|ref|ZP_04285478.1| Ribosome-recycling factor [Bacillus cereus ATCC 4342] gi|229180100|ref|ZP_04307444.1| Ribosome-recycling factor [Bacillus cereus 172560W] gi|229191993|ref|ZP_04318963.1| Ribosome-recycling factor [Bacillus cereus ATCC 10876] gi|296504319|ref|YP_003666019.1| ribosome recycling factor [Bacillus thuringiensis BMB171] gi|33301535|sp|Q812X4|RRF_BACCR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226703253|sp|B7HDU7|RRF_BACC4 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|29897468|gb|AAP10744.1| Ribosome Recycling Factor (RRF) [Bacillus cereus ATCC 14579] gi|47554264|gb|EAL12626.1| ribosome recycling factor [Bacillus cereus G9241] gi|206732413|gb|EDZ49594.1| ribosome recycling factor [Bacillus cereus AH1134] gi|218162544|gb|ACK62536.1| ribosome recycling factor [Bacillus cereus B4264] gi|228591544|gb|EEK49393.1| Ribosome-recycling factor [Bacillus cereus ATCC 10876] gi|228603309|gb|EEK60786.1| Ribosome-recycling factor [Bacillus cereus 172560W] gi|228626127|gb|EEK82876.1| Ribosome-recycling factor [Bacillus cereus ATCC 4342] gi|228631372|gb|EEK88006.1| Ribosome-recycling factor [Bacillus cereus m1550] gi|228637028|gb|EEK93487.1| Ribosome-recycling factor [Bacillus cereus BDRD-ST24] gi|228654337|gb|EEL10202.1| Ribosome-recycling factor [Bacillus cereus BDRD-Cer4] gi|228672071|gb|EEL27362.1| Ribosome-recycling factor [Bacillus cereus Rock1-15] gi|228702123|gb|EEL54599.1| Ribosome-recycling factor [Bacillus cereus Rock4-2] gi|228711776|gb|EEL63728.1| Ribosome-recycling factor [Bacillus cereus F65185] gi|228723757|gb|EEL75112.1| Ribosome-recycling factor [Bacillus cereus AH676] gi|228772745|gb|EEM21185.1| Ribosome-recycling factor [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228799556|gb|EEM46509.1| Ribosome-recycling factor [Bacillus thuringiensis serovar pakistani str. T13001] gi|228805666|gb|EEM52256.1| Ribosome-recycling factor [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228837007|gb|EEM82348.1| Ribosome-recycling factor [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|296325371|gb|ADH08299.1| ribosome recycling factor [Bacillus thuringiensis BMB171] Length = 185 Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 78/179 (43%), Positives = 119/179 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ ++M ++ +++ T+R GR + S+LD V+V+ YG+ P+ Q+AN+TV E R+L Sbjct: 6 LKSSNEKMEKAVAAYSRELATVRAGRANASVLDKVQVDYYGAPTPVVQLANITVPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +DK + +E+ I +++LGLNP +G V+RI P TEERR LVKV YAE++K Sbjct: 66 VIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRN+RRDG D LKK K+G+ +ED + DIQK TD I +D + K+KEIM Sbjct: 126 VAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIME 184 >gi|307256592|ref|ZP_07538373.1| Ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306865002|gb|EFM96904.1| Ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 185 Score = 158 bits (399), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 75/176 (42%), Positives = 114/176 (64%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 +DRM ++ LK + +RTGR PS+LD ++VE YGS PL Q+ANV + R L V+V Sbjct: 10 QDRMEKSLEALKSHISKIRTGRAQPSLLDGIQVEYYGSATPLRQLANVVAEDARTLAVNV 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +D+ ++++VE+ I S+LGLNP G +R+P+P TEERR L+K+ E+ KI++R Sbjct: 70 FDRSLISAVEKAILTSDLGLNPSSAGATIRVPLPPLTEERRRDLIKIVKGEGEQGKIAIR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 N+RRD D +K K + SED +++IQKITD +K +D K+KE+++F Sbjct: 130 NVRRDANDQIKALLKDKEISEDEERKAQDEIQKITDGYVKKVDEVLAAKEKELLNF 185 >gi|297584070|ref|YP_003699850.1| ribosome recycling factor [Bacillus selenitireducens MLS10] gi|297142527|gb|ADH99284.1| ribosome recycling factor [Bacillus selenitireducens MLS10] Length = 185 Score = 158 bits (399), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 76/177 (42%), Positives = 120/177 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+N ++RM ++ +++ ++R GR +PS+LD V+VE YG PLNQ+A ++V E R+L Sbjct: 6 LKNAEERMNKSLESFGRELGSVRAGRANPSILDRVQVEYYGMMTPLNQLATISVPEGRLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV +DK + +E+ I +++LGL+P +G ++RI +P TEERR L+KV YAE +K Sbjct: 66 VVQPFDKSSLPDIEKAIQKADLGLSPSNDGNIIRISIPALTEERRKELIKVVGRYAEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 ++VRN+RRD D LKK K G+ +ED + ++D+QK+TD IK ID + K+ +I Sbjct: 126 VAVRNVRRDANDELKKLEKDGEMTEDELRRGQDDVQKLTDDYIKKIDERVKAKENDI 182 >gi|260775282|ref|ZP_05884179.1| ribosome recycling factor [Vibrio coralliilyticus ATCC BAA-450] gi|260608463|gb|EEX34628.1| ribosome recycling factor [Vibrio coralliilyticus ATCC BAA-450] Length = 185 Score = 158 bits (399), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 77/179 (43%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ ++RM ++ LK ++ +RTGR PS+L + VE YG+ PLNQVANV + R L Sbjct: 7 QDAQERMEKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAPTPLNQVANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DKE+ VE+ I S+LGLNP+ G ++R+P+P TEERR LVK+ AE ++ Sbjct: 67 ITVFDKELTPKVEKAIMTSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD LK K + SED +++IQKITD+ +K +D K+KE+M Sbjct: 127 AIRNIRRDANGELKALLKDKEISEDEDRKGQDEIQKITDAAVKQVDEVLAAKEKELMEV 185 >gi|239636263|ref|ZP_04677265.1| ribosome recycling factor [Staphylococcus warneri L37603] gi|239597618|gb|EEQ80113.1| ribosome recycling factor [Staphylococcus warneri L37603] gi|330685682|gb|EGG97323.1| ribosome recycling factor [Staphylococcus epidermidis VCU121] Length = 184 Score = 158 bits (399), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 77/180 (42%), Positives = 120/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +++ + RM +I L K++ + GR + ++L+ V V+ YG+ P+ Q+A++ V E R+L Sbjct: 5 IKDTRARMQKSIDNLSKELANISAGRANSNLLNGVNVDYYGAPTPVQQLASINVPEARLL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+S +DK VA +E+ I+ +NLG+NP +G+V+RI VP TEERR LVK E +K Sbjct: 65 VISPYDKSSVADIEKAINAANLGVNPTSDGEVIRISVPALTEERRKELVKDVKKIGEDAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+RNIRRD D LKK K+G +ED + S +D+QK TD++IK ID ++K+K+IM Sbjct: 125 VSIRNIRRDVNDQLKKDEKNGDITEDDLRSQTDDVQKATDNSIKEIDQLVDDKEKDIMSV 184 >gi|32034388|ref|ZP_00134578.1| COG0233: Ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208052|ref|YP_001053277.1| ribosome recycling factor [Actinobacillus pleuropneumoniae L20] gi|165975984|ref|YP_001651577.1| ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190149883|ref|YP_001968408.1| ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303251563|ref|ZP_07337737.1| ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303252201|ref|ZP_07338369.1| ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307245431|ref|ZP_07527519.1| Ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247544|ref|ZP_07529588.1| Ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307249778|ref|ZP_07531756.1| Ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307252124|ref|ZP_07534023.1| Ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307254385|ref|ZP_07536223.1| Ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258844|ref|ZP_07540576.1| Ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307261026|ref|ZP_07542708.1| Ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307263207|ref|ZP_07544827.1| Ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|322514208|ref|ZP_08067270.1| ribosome recycling factor [Actinobacillus ureae ATCC 25976] gi|166230406|sp|A3MZT6|RRF_ACTP2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238687536|sp|B0BUC8|RRF_ACTPJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238692331|sp|B3GXB4|RRF_ACTP7 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|126096844|gb|ABN73672.1| ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165876085|gb|ABY69133.1| ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189915014|gb|ACE61266.1| ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302648984|gb|EFL79172.1| ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302649561|gb|EFL79743.1| ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306853772|gb|EFM85989.1| Ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306855909|gb|EFM88068.1| Ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306858193|gb|EFM90271.1| Ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306860424|gb|EFM92438.1| Ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306862684|gb|EFM94640.1| Ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867195|gb|EFM99051.1| Ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306869328|gb|EFN01123.1| Ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306871424|gb|EFN03148.1| Ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|322119901|gb|EFX91910.1| ribosome recycling factor [Actinobacillus ureae ATCC 25976] Length = 185 Score = 158 bits (399), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 75/179 (41%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ +DRM ++ LK + +RTGR PS+LD ++VE YGS PL Q+ANV + R L Sbjct: 7 KDTQDRMEKSLEALKSHISKIRTGRAQPSLLDGIQVEYYGSATPLRQLANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+V+D+ ++++VE+ I S+LGLNP G +R+P+P TEERR L+K+ E+ KI Sbjct: 67 VNVFDRSLISAVEKAILTSDLGLNPSSAGATIRVPLPPLTEERRRDLIKIVKGEGEQGKI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD D +K K + SED +++IQKITD +K +D K+KE++ F Sbjct: 127 AIRNVRRDANDQIKALLKDKEISEDEERKAQDEIQKITDGYVKKVDEVLAAKEKELLDF 185 >gi|241764760|ref|ZP_04762769.1| ribosome recycling factor [Acidovorax delafieldii 2AN] gi|241365750|gb|EER60422.1| ribosome recycling factor [Acidovorax delafieldii 2AN] Length = 186 Score = 158 bits (399), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 79/172 (45%), Positives = 112/172 (65%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M +I+ K ++ +RTGR +P++LD V VE YGS VPL+QVANV +L+ R + V W+ Sbjct: 13 KMDQSIAAFKNNLQKIRTGRANPALLDTVHVEYYGSPVPLSQVANVALLDSRTISVQPWE 72 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K M A +E+ I ES+LGLNP G ++R+P+P +EERR + K+A E +KI+VRN+ Sbjct: 73 KGMGAKIEKAIRESDLGLNPASMGDLIRVPMPPMSEERRKEMTKLARNEGESAKIAVRNL 132 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD + +KK K ASED E D+QK TD I ID+ K++EIM Sbjct: 133 RRDANESVKKLVKDKLASEDDQKRAETDVQKFTDKHIAEIDALVAAKEQEIM 184 >gi|326316576|ref|YP_004234248.1| ribosome recycling factor [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373412|gb|ADX45681.1| ribosome recycling factor [Acidovorax avenae subsp. avenae ATCC 19860] Length = 186 Score = 158 bits (399), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 78/177 (44%), Positives = 117/177 (66%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N + +M +I K ++ +RTGR +P++LD V+VE YGS VPL+QVANV++++ R + Sbjct: 8 KNTEAKMDQSIVAFKNNLAKIRTGRANPALLDSVQVEYYGSMVPLSQVANVSLIDARTIS 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K M A +E+ I ES+LGLNP G ++R+P+P +EERR + K+A E +K+ Sbjct: 68 VQPWEKGMGAKIEKAIRESDLGLNPASMGDLIRVPMPPMSEERRKEMTKLARNEGEGAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +VRN+RRD + +KK K ASED E DIQK+TD I +D+ K++EIM Sbjct: 128 AVRNLRRDANESVKKLVKDKLASEDEQKRAEADIQKVTDKHIAEVDALVAAKEQEIM 184 >gi|323701848|ref|ZP_08113518.1| ribosome recycling factor [Desulfotomaculum nigrificans DSM 574] gi|323533152|gb|EGB23021.1| ribosome recycling factor [Desulfotomaculum nigrificans DSM 574] Length = 184 Score = 158 bits (399), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 76/179 (42%), Positives = 117/179 (65%), Gaps = 1/179 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + N ++ M T+ ++K+ +LR GR +P++LD V V YG+ PLNQ+AN++V E R L Sbjct: 6 IANAEENMKKTVEVVRKEFASLRAGRATPALLDKVVVSYYGTPTPLNQLANISVPEARSL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK + +ER I +S+LG+ P +G V+R+ +P+ T+ERR LVKV AE+ + Sbjct: 66 VIQPWDKSALPEIERAILKSDLGITPTSDGTVIRLTIPQLTQERRAELVKVVKKKAEEGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +++RNIRR+ +D +K +K G ED V + D+QKITD IK ID + K++EIM Sbjct: 126 VAIRNIRREVIDQIKAKQKEG-VPEDEVKRGQEDMQKITDKFIKEIDEMVKSKEQEIMQ 183 >gi|323142320|ref|ZP_08077152.1| ribosome recycling factor [Phascolarctobacterium sp. YIT 12067] gi|322413204|gb|EFY04091.1| ribosome recycling factor [Phascolarctobacterium sp. YIT 12067] Length = 187 Score = 158 bits (399), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 78/186 (41%), Positives = 124/186 (66%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++I I+ +M +++ L+ D+ +LR GR +PS+L+ V V+ YGS P+ QVA+VTV Sbjct: 4 VNEII--SGIESKMEKSVAALRVDLASLRAGRATPSLLEKVMVDYYGSPTPVTQVASVTV 61 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPRM+V+ W+K ++ +E+ I +S+LGLNP +G +R+ +P+ TEERR LVKV H Sbjct: 62 PEPRMIVIQPWEKNILKDIEKAIMKSDLGLNPNSDGICIRLNLPQLTEERRKDLVKVVHK 121 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE+ ++ VRN+RRD D +KK+ K+ + +ED +QK+TD +K ID+ K+ Sbjct: 122 KAEEYRVVVRNLRRDANDAIKKTEKAKEITEDEAKKGTEKVQKLTDKVMKEIDAAAANKE 181 Query: 181 KEIMHF 186 KE+M Sbjct: 182 KEVMEV 187 >gi|302339357|ref|YP_003804563.1| ribosome recycling factor [Spirochaeta smaragdinae DSM 11293] gi|301636542|gb|ADK81969.1| ribosome recycling factor [Spirochaeta smaragdinae DSM 11293] Length = 184 Score = 158 bits (399), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 79/179 (44%), Positives = 115/179 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ + RM +IS L D LRTGR S ++ D +KV+ YG PL+Q A ++V E R++ Sbjct: 5 LKDAESRMKKSISALGDDFNGLRTGRASAALFDKIKVDYYGQSTPLSQAATISVPEARLV 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK ++ +ER I +S L +NP +G+V+RI +P TEERR LVKVA AE+ K Sbjct: 65 VIQPWDKGLLGEIERAIQKSELSVNPNNDGKVIRINIPPLTEERRKELVKVAKNQAEQCK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +++RNIRRD + LKK +KSG SED ++IQK+TD ++ E K++EIM Sbjct: 125 VAIRNIRRDANEELKKIQKSGDISEDEEKRGADEIQKLTDKHVEEAGKLLEAKEQEIME 183 >gi|153940196|ref|YP_001391730.1| ribosome recycling factor [Clostridium botulinum F str. Langeland] gi|166230780|sp|A7GG20|RRF_CLOBL RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|152936092|gb|ABS41590.1| ribosome recycling factor [Clostridium botulinum F str. Langeland] gi|295319756|gb|ADG00134.1| ribosome recycling factor [Clostridium botulinum F str. 230613] Length = 184 Score = 158 bits (399), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 76/180 (42%), Positives = 120/180 (66%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ ++MG TI LK+++ +++ GR +P+MLD ++ E YGS PLNQ+ N+++ E R+L Sbjct: 6 LKKADEKMGKTIVALKRELASMKAGRANPAMLDRIEAEYYGSMTPLNQLGNISIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WDK ++++E+ I +S+LGLNP +G V+R+ +PE TEE R +VK E++K Sbjct: 66 LIQPWDKSALSAIEKAILKSDLGLNPSNDGTVIRLVIPELTEETRKNIVKTVKKTGEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++R+IRRD D +K +K SED + E+DIQK TD IK IDS K+KEI+ Sbjct: 126 VAIRSIRRDCNDDVKNLKKDD-VSEDDIKKAEDDIQKKTDKYIKEIDSIISAKEKEILSI 184 >gi|169350431|ref|ZP_02867369.1| hypothetical protein CLOSPI_01199 [Clostridium spiroforme DSM 1552] gi|169292751|gb|EDS74884.1| hypothetical protein CLOSPI_01199 [Clostridium spiroforme DSM 1552] Length = 181 Score = 157 bits (398), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 79/178 (44%), Positives = 115/178 (64%), Gaps = 4/178 (2%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +RMG TI K+D+ T+RTGR +P+MLD V V YGS P+NQ+A ++V+E R L Sbjct: 6 LDEASERMGKTIDSFKRDLTTVRTGRANPAMLDRVMVNYYGSPTPINQMAGISVVEGRQL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +DK ++ +E GI+E+ LGL P +G+++RI VP TE+RR K +AE +K Sbjct: 66 VIKPYDKSVIKDIEHGIYEAELGLTPQNDGEIIRIMVPALTEDRRREFAKQVWKFAENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +S+RNIRRD D +KK SED + + + +QK+TD +K ID + K+KEIM Sbjct: 126 VSIRNIRRDSNDEIKKV----DGSEDEIKAGQEKVQKLTDKFVKEIDEIAKVKEKEIM 179 >gi|212639532|ref|YP_002316052.1| ribosome recycling factor [Anoxybacillus flavithermus WK1] gi|212561012|gb|ACJ34067.1| Ribosome recycling factor [Anoxybacillus flavithermus WK1] Length = 183 Score = 157 bits (398), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 76/179 (42%), Positives = 117/179 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L N K++M + +++ T+R GR +P++L+ + V+ YG P+ Q+A + V E R+L Sbjct: 4 LTNAKEKMDKAVQAFSRELATIRAGRANPALLEKITVDYYGMPTPIIQLAGIQVPEARLL 63 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +DK ++ +E+ I S+LGL P +G V+RI +P TEERR LVK+ YAE++K Sbjct: 64 VIQPYDKSVLKEIEKAILASDLGLTPSNDGSVIRISIPPLTEERRRELVKLVKKYAEEAK 123 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRNIRRD D LKK K+G+ +ED + DIQK+TD I ID+ +EK+KE+M Sbjct: 124 VAVRNIRRDANDELKKLEKNGEITEDELRGYTEDIQKLTDDHIAKIDAITKEKEKEVME 182 >gi|323497979|ref|ZP_08102988.1| ribosome recycling factor [Vibrio sinaloensis DSM 21326] gi|323317024|gb|EGA70026.1| ribosome recycling factor [Vibrio sinaloensis DSM 21326] Length = 185 Score = 157 bits (398), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 77/179 (43%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ K+RM ++ LK ++ +RTGR PS+L + VE YG+ PLNQVANV + R L Sbjct: 7 QDAKERMDKSVEALKNNLSKVRTGRAHPSLLSGINVEYYGAPTPLNQVANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DKE+ VE+ I S+LGLNP+ G ++R+P+P TEERR LVK+ AE ++ Sbjct: 67 ITVFDKELTPKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD LK K + SED +++IQK+TD+ +K +D K+KE+M Sbjct: 127 AIRNIRRDANGELKALLKDKEISEDEDRKGQDEIQKLTDAAVKQVDEVLAAKEKELMEV 185 >gi|282882018|ref|ZP_06290659.1| ribosome recycling factor [Peptoniphilus lacrimalis 315-B] gi|300813724|ref|ZP_07094044.1| ribosome recycling factor [Peptoniphilus sp. oral taxon 836 str. F0141] gi|281298048|gb|EFA90503.1| ribosome recycling factor [Peptoniphilus lacrimalis 315-B] gi|300512181|gb|EFK39361.1| ribosome recycling factor [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 185 Score = 157 bits (398), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 76/170 (44%), Positives = 116/170 (68%) Query: 17 TISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMV 76 TIS LK+D ++R GR + S+LD + V+ YG P+NQVA ++ EPRML++S WD +++ Sbjct: 16 TISSLKEDFQSIRAGRANTSLLDKITVDYYGQQSPINQVAGLSAPEPRMLMISPWDPKLI 75 Query: 77 ASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDG 136 +E+ I +S+LG+ P +G+V+R+ +P+ TEERR L KV +E +KI++RNIRRD Sbjct: 76 PEIEKSILKSDLGITPSNDGKVIRLIIPQLTEERRKDLTKVVGKNSEAAKIAIRNIRRDA 135 Query: 137 MDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 MD +KK+ KS + +ED S E +IQK+TD I+ ID + K+ E+M Sbjct: 136 MDEIKKAEKSKEITEDDRKSNEEEIQKLTDKYIEEIDKITKAKEIELMEI 185 >gi|254492622|ref|ZP_05105793.1| ribosome recycling factor [Methylophaga thiooxidans DMS010] gi|224462143|gb|EEF78421.1| ribosome recycling factor [Methylophaga thiooxydans DMS010] Length = 185 Score = 157 bits (398), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 81/179 (45%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ DRM +++ L M +R GR S+LD ++V YGS VPL+QVANV V + R L Sbjct: 7 KDAADRMKKSVAALGTAMAKIRAGRAHTSLLDHLQVPYYGSDVPLSQVANVGVEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+ W+K+MV+ VE+ I S+LG+NP+ G +RIP+P TEERR LVKVA AE +++ Sbjct: 67 VTPWEKDMVSVVEKAIMTSDLGVNPMSAGMTIRIPIPPLTEERRRDLVKVAKGEAENARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD LK K + SED E ++QK+TD+TIK ID +K+ ++M Sbjct: 127 AVRNIRRDANSTLKDLLKEKEISEDEQRGAEEEVQKLTDATIKEIDQVLADKESDLMEV 185 >gi|168180688|ref|ZP_02615352.1| ribosome recycling factor [Clostridium botulinum NCTC 2916] gi|182668443|gb|EDT80422.1| ribosome recycling factor [Clostridium botulinum NCTC 2916] Length = 184 Score = 157 bits (398), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 77/180 (42%), Positives = 120/180 (66%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ ++MG TI LK+++ +++ GR +P+MLD ++ E YGS PLNQ+ N++V E R+L Sbjct: 6 LKKADEKMGKTIVALKRELASMKAGRANPAMLDRIEAEYYGSMTPLNQLGNISVPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WDK ++++E+ I +S+LGLNP +G V+R+ +PE TEE R +VK E++K Sbjct: 66 LIQPWDKGALSAIEKAILKSDLGLNPSNDGTVIRLVIPELTEETRKNIVKTVKKTGEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++R+IRRD D +K +K SED + E+DIQK TD IK IDS K+KEI+ Sbjct: 126 VAIRSIRRDCNDDVKNLKKDD-VSEDDIKKAEDDIQKKTDKYIKEIDSIISAKEKEILSI 184 >gi|332289930|ref|YP_004420782.1| ribosome recycling factor [Gallibacterium anatis UMN179] gi|330432826|gb|AEC17885.1| ribosome recycling factor [Gallibacterium anatis UMN179] Length = 185 Score = 157 bits (398), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 79/184 (42%), Positives = 118/184 (64%), Gaps = 4/184 (2%) Query: 7 LQNIKD----RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLE 62 ++ IKD RM ++ LK + +RTGR PS+LD + VE YG+ PL QVANV + Sbjct: 2 IKTIKDEAQQRMEKSVEALKNQISKIRTGRAHPSLLDGIHVEYYGAATPLRQVANVVAED 61 Query: 63 PRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 R L ++V+D+ ++++VE+ I S+LGLNP G V+R+P+P TEERR L K+ A A Sbjct: 62 ARTLAITVFDRSLISAVEKAIMASDLGLNPASAGTVIRVPLPPLTEERRRDLTKIVRAEA 121 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 E+ +++VRNIRRD D +K K + SE+ +++IQK+TD +K +D EK+KE Sbjct: 122 EQGRVAVRNIRRDANDKIKALLKEKEISENDERKAQDEIQKLTDLYVKKVDEALAEKEKE 181 Query: 183 IMHF 186 +M F Sbjct: 182 LMDF 185 >gi|330817436|ref|YP_004361141.1| Ribosome releasing factor [Burkholderia gladioli BSR3] gi|327369829|gb|AEA61185.1| Ribosome releasing factor [Burkholderia gladioli BSR3] Length = 186 Score = 157 bits (398), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 78/177 (44%), Positives = 113/177 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++ +M +I K D+ +RTGR +LD V+V+ YGS VP++QVAN+T+ + R + Sbjct: 8 KGVEQKMQRSIEAFKNDLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVANLTLADARTIS 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K MVA VE+ I ES+LGLNP G +R+P+P TEERR L KV + AE +K+ Sbjct: 68 VQPWEKPMVAKVEKAIRESDLGLNPATSGDAIRVPMPALTEERRRELAKVVKSEAETAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +VRN+RRD + LKK K + SED +D+QK+TD + ID + K+ EIM Sbjct: 128 AVRNLRRDANEQLKKLVKDKEISEDDERRASDDVQKLTDKYVAEIDKLAQTKEAEIM 184 >gi|152976190|ref|YP_001375707.1| ribosome recycling factor [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189044044|sp|A7GRF4|RRF_BACCN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|152024942|gb|ABS22712.1| ribosome recycling factor [Bacillus cytotoxicus NVH 391-98] Length = 185 Score = 157 bits (398), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 76/174 (43%), Positives = 115/174 (66%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 ++M ++ +++ T+R GR S S+LD V+V+ YG+ P+ Q+AN+TV E R+LV+ + Sbjct: 11 EKMEKAVAAYSRELATVRAGRASASILDKVQVDYYGAPTPVVQLANITVPEARLLVIQPY 70 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 DK + +E+ I +++LGLNP +G V+RI P TEERR LVKV YAE +K+++RN Sbjct: 71 DKTSIGDIEKAILKADLGLNPSNDGSVIRIAFPALTEERRRELVKVVKKYAEDAKVAIRN 130 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +RRDG D LKK K+G+ +ED + DIQK TD I +D + K++EIM Sbjct: 131 VRRDGNDELKKLEKAGEMTEDDLRGYTEDIQKETDKYIAKVDEIAKNKEQEIME 184 >gi|289208668|ref|YP_003460734.1| ribosome recycling factor [Thioalkalivibrio sp. K90mix] gi|288944299|gb|ADC71998.1| ribosome recycling factor [Thioalkalivibrio sp. K90mix] Length = 185 Score = 157 bits (398), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 78/178 (43%), Positives = 116/178 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +++ + RM +I L+ ++ +RTGR PS+L+ V V+ YG VP+NQVAN+ + R L Sbjct: 6 IKDARQRMDKSIEALRNELAKIRTGRAHPSLLEHVHVDYYGMEVPINQVANINAEDSRTL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V ++K+MVA VE+ I S+LGLNP G V+R+P+P TEERR LVKV A AE ++ Sbjct: 66 AVVPYEKDMVAKVEKAIMTSDLGLNPASMGTVIRVPLPALTEERRRDLVKVVRAEAENAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++VRNIRRD + K++ K + SED + +QK+TD I ID+ E+K+ E+M Sbjct: 126 VAVRNIRRDANNTFKQAVKDKEVSEDEERKAQEQVQKLTDDHIAKIDALLEDKEAELM 183 >gi|242278734|ref|YP_002990863.1| ribosome recycling factor [Desulfovibrio salexigens DSM 2638] gi|242121628|gb|ACS79324.1| ribosome recycling factor [Desulfovibrio salexigens DSM 2638] Length = 185 Score = 157 bits (398), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 79/186 (42%), Positives = 119/186 (63%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N+V L + K RM ++ L+ D LRTGR + S++D + V+ YG+ P+NQ+A+V++ Sbjct: 2 INEV--LADGKKRMEGALTALENDFAKLRTGRAATSLVDNISVDYYGTPTPINQLASVSI 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R + + WDK +++ + +S+LGLNP+ +G+VLRI +P TEERR LVK+A Sbjct: 60 PDSRTISIQPWDKGAFPLIDKALQQSDLGLNPVNDGKVLRIAIPPLTEERRKELVKIAKK 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 Y E SKI++RN+RRD D LKK K SED ++D+QKITD +K D EK+ Sbjct: 120 YTEDSKIAIRNVRRDMNDTLKKLEKDKDISEDEQRKAQDDVQKITDGYVKKCDVACGEKE 179 Query: 181 KEIMHF 186 KEI+ Sbjct: 180 KEILEI 185 >gi|16272749|ref|NP_438968.1| ribosome recycling factor [Haemophilus influenzae Rd KW20] gi|148827996|ref|YP_001292749.1| ribosome recycling factor [Haemophilus influenzae PittGG] gi|260579900|ref|ZP_05847730.1| ribosome recycling factor [Haemophilus influenzae RdAW] gi|1173172|sp|P44307|RRF_HAEIN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166230791|sp|A5UHW0|RRF_HAEIG RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|1573820|gb|AAC22467.1| ribosome releasing factor (rrf) [Haemophilus influenzae Rd KW20] gi|148719238|gb|ABR00366.1| ribosome recycling factor [Haemophilus influenzae PittGG] gi|260093184|gb|EEW77117.1| ribosome recycling factor [Haemophilus influenzae RdAW] Length = 185 Score = 157 bits (397), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 78/186 (41%), Positives = 119/186 (63%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +NQ+ ++ +DRM ++ LK + +RTGR PS+LD ++VE YG+ PL Q+ANV Sbjct: 2 LNQI--KKDAQDRMEKSLEALKGHISKIRTGRAQPSLLDAIQVEYYGAATPLRQLANVVA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R L V+V+D+ ++++VE+ I S+LGLNP G +R+P+P TEERR L+K+ Sbjct: 60 EDARTLAVTVFDRSLISAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIVKG 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E+ K++VRN+RRD D +K K + SE+ E +IQKITD IK +D +K+ Sbjct: 120 EGEQGKVAVRNVRRDANDKIKALLKDKEISENEQHKAEEEIQKITDIYIKKVDEVLADKE 179 Query: 181 KEIMHF 186 KE+M F Sbjct: 180 KELMDF 185 >gi|331001980|ref|ZP_08325500.1| ribosome-recycling factor [Lachnospiraceae oral taxon 107 str. F0167] gi|330411776|gb|EGG91181.1| ribosome-recycling factor [Lachnospiraceae oral taxon 107 str. F0167] Length = 184 Score = 157 bits (397), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 74/178 (41%), Positives = 117/178 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +++M +I L ++ +R GR +P +LD +KV+ YG+ P+ QV NV+V EPR++ Sbjct: 5 IKKFEEKMNKSIDVLLEEYAAIRAGRANPHVLDRIKVDYYGTATPIQQVGNVSVPEPRII 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +S W+K ++ +E+ I+ S+LG+NP +G +R+ PE TEERR LVK E K Sbjct: 65 QISPWEKSLLKEIEKAINMSDLGINPTNDGSCIRLVFPELTEERRKELVKDVKKKGEACK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++RNIRRD +D +KK K+G+ +ED V EN IQK+TD I+ +D E+K KEI+ Sbjct: 125 VAIRNIRRDAIDAVKKLEKAGEFTEDDVKDGENKIQKMTDKAIERVDKAIEDKSKEIL 182 >gi|320450765|ref|YP_004202861.1| ribosome recycling factor [Thermus scotoductus SA-01] gi|320150934|gb|ADW22312.1| ribosome recycling factor [Thermus scotoductus SA-01] Length = 185 Score = 157 bits (397), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 78/171 (45%), Positives = 112/171 (65%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M ++ L+ ++ LRTGR +P++L +KVE YG+HVPLNQ+A VT + + LVV WD+ Sbjct: 14 MQKSLEALEHNLAGLRTGRANPALLLHLKVEYYGTHVPLNQIATVTAPDAKTLVVQSWDQ 73 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 + ++E+ I +S+LGLNP +G L I +P TEERR LVK A YAE+ +I++RNIR Sbjct: 74 NALKAIEKAIRDSDLGLNPANKGDALYINIPPLTEERRKELVKTARHYAEEGRIAIRNIR 133 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 R+ ++ LKK K SED E +IQKITD I D E+K++EI+ Sbjct: 134 REALEKLKKLSKELHLSEDDTKRAEAEIQKITDEFIAKADELLEKKEQEIL 184 >gi|218781002|ref|YP_002432320.1| ribosome recycling factor [Desulfatibacillum alkenivorans AK-01] gi|226703258|sp|B8FGE3|RRF_DESAA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|218762386|gb|ACL04852.1| ribosome recycling factor [Desulfatibacillum alkenivorans AK-01] Length = 185 Score = 157 bits (397), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 72/176 (40%), Positives = 119/176 (67%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 +++M I+ L+K ++ +RTGR S SMLD VK++ YG+ P+NQ A V + E R++ + Sbjct: 10 REKMDKAIAALEKGLLRVRTGRASLSMLDGVKLDYYGTPTPINQAATVAIPESRLITIQP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 WD ++ +E+ I +S+LGLNP +G+++RI +P TE+RR +VK+ + +E+ KISVR Sbjct: 70 WDASVIKDIEKAILKSDLGLNPSNDGKIIRIAIPPLTEDRRKEMVKLVNKMSEEGKISVR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 NIRRD + +K +K G +ED+ ++++QKITD +K +D +K+KEI+ F Sbjct: 130 NIRRDANETIKSMKKDGDIAEDLAFKGQDEVQKITDDFVKKVDDICAQKEKEILEF 185 >gi|15673991|ref|NP_268166.1| ribosome recycling factor [Lactococcus lactis subsp. lactis Il1403] gi|281492614|ref|YP_003354594.1| ribosome recycling factor [Lactococcus lactis subsp. lactis KF147] gi|13878747|sp|Q9CE39|RRF_LACLA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|12725055|gb|AAK06107.1|AE006430_12 ribosome recycling factor [Lactococcus lactis subsp. lactis Il1403] gi|281376278|gb|ADA65769.1| Ribosome recycling factor [Lactococcus lactis subsp. lactis KF147] gi|326407547|gb|ADZ64618.1| ribosome recycling factor [Lactococcus lactis subsp. lactis CV56] Length = 185 Score = 157 bits (397), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 75/176 (42%), Positives = 120/176 (68%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 +DRM ++ L++D+ +R GR + S+LD V+V YG+ PLNQ+A++T+ E R+L+V+ Sbjct: 10 QDRMKQSLGSLQRDLGHIRAGRANASLLDRVQVVYYGAPTPLNQLASITIPEARVLMVTP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +DK ++ +E+ ++ES+LG+ P +G V+R+ +P TEERR LVK Y E +K+++R Sbjct: 70 FDKSILKDIEKALYESDLGITPANDGSVIRLVIPMLTEERRRELVKEMGKYIESAKVAIR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 NIRRD MD KKS K+ + +ED + LEN+IQK+TD +K D K+KE++ Sbjct: 130 NIRRDAMDTAKKSEKAKEITEDDLKDLENNIQKVTDDAVKEADRLASIKEKELLDI 185 >gi|261367153|ref|ZP_05980036.1| ribosome recycling factor [Subdoligranulum variabile DSM 15176] gi|282571279|gb|EFB76814.1| ribosome recycling factor [Subdoligranulum variabile DSM 15176] Length = 184 Score = 157 bits (397), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 72/176 (40%), Positives = 115/176 (65%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 +++M ++ L +++ ++R GR +P++LD V V+ YGS P+NQ+A V+V E R+L ++ Sbjct: 8 FEEKMNASVDHLVRELASIRAGRANPAVLDRVTVDYYGSPTPINQIAAVSVAEARILTIT 67 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 WD++M+ + + I S++G+NPI +GQV+R+ P TEERR L K E++K++V Sbjct: 68 PWDRQMLKPISKAIQTSDIGINPIDDGQVIRLVFPAPTEERRKQLTKDVQKQGEEAKVAV 127 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 RN+RRD MD K +K+G+ +ED LE + QK+TD +K ID K KEIM Sbjct: 128 RNVRRDAMDKFKAMKKAGELTEDDQKKLEEETQKLTDKYVKMIDETCAAKNKEIME 183 >gi|120610506|ref|YP_970184.1| ribosome recycling factor [Acidovorax citrulli AAC00-1] gi|166230402|sp|A1TN72|RRF_ACIAC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|120588970|gb|ABM32410.1| ribosome recycling factor [Acidovorax citrulli AAC00-1] Length = 186 Score = 157 bits (397), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 78/177 (44%), Positives = 116/177 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N + +M +I K ++ +RTGR +P++LD V+VE YGS VPL+QVANV++++ R + Sbjct: 8 KNTEAKMDQSIVAFKNNLAKIRTGRANPALLDSVQVEYYGSMVPLSQVANVSLIDARTIS 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K M A +E+ I ES LGLNP G ++R+P+P +EERR + K+A E +K+ Sbjct: 68 VQPWEKGMGAKIEKAIRESELGLNPASMGDLIRVPMPPMSEERRKEMTKLARNEGEGAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +VRN+RRD + +KK K ASED E DIQK+TD I +D+ K++EIM Sbjct: 128 AVRNLRRDANESVKKLVKDKLASEDEQKRAEADIQKVTDKHIAEVDALVAAKEQEIM 184 >gi|227488622|ref|ZP_03918938.1| ribosome recycling factor [Corynebacterium glucuronolyticum ATCC 51867] gi|227543226|ref|ZP_03973275.1| ribosome recycling factor [Corynebacterium glucuronolyticum ATCC 51866] gi|227091516|gb|EEI26828.1| ribosome recycling factor [Corynebacterium glucuronolyticum ATCC 51867] gi|227181035|gb|EEI62007.1| ribosome recycling factor [Corynebacterium glucuronolyticum ATCC 51866] Length = 185 Score = 157 bits (397), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 76/174 (43%), Positives = 114/174 (65%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 +RM T+ ++++ +RTGR +PSM + V E YG P+NQ+A ++V EPRML++ + Sbjct: 11 ERMEATVDHTREELSHIRTGRANPSMFNGVIAEFYGQPTPINQMATISVPEPRMLLIKPY 70 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 D + +ER I S+LG+NP +GQVLR+ VP+ TEERR +VKVA + E+ KI++RN Sbjct: 71 DMNSMDDIERAIRNSDLGVNPTNDGQVLRVTVPQLTEERRREMVKVAKSKGEEGKIAIRN 130 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 IRR GMD LKK +K G A ED V + E ++ K+T ++ E K+K++M Sbjct: 131 IRRKGMDQLKKIQKDGDAGEDEVQAGEKELDKVTKKNETRVEELVEAKEKDLME 184 >gi|293390815|ref|ZP_06635149.1| ribosome recycling factor [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951349|gb|EFE01468.1| ribosome recycling factor [Aggregatibacter actinomycetemcomitans D7S-1] Length = 185 Score = 157 bits (397), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 78/186 (41%), Positives = 119/186 (63%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +NQ+ Q+ +DRM ++ LK + +RTGR PS+LD ++V+ YGS PL Q+ANV Sbjct: 2 INQI--RQDAEDRMEKSLEALKGHIAKIRTGRAQPSLLDAIQVDYYGSATPLRQLANVVA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R L V+V+D+ ++ +VE+ I S+LGLNP G +R+P+P TEERR L+K+ A Sbjct: 60 EDARTLAVTVFDRSLIQAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRELIKIVKA 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E+ K+++RN+RRD D +K K + SE+ E IQK+TDS IK +D +K+ Sbjct: 120 EGEQGKVAIRNVRRDANDKIKALLKDKEISENDQHKAEEVIQKLTDSFIKKVDDVLADKE 179 Query: 181 KEIMHF 186 KE++ F Sbjct: 180 KELLDF 185 >gi|229544425|ref|ZP_04433483.1| ribosome recycling factor [Bacillus coagulans 36D1] gi|229324910|gb|EEN90587.1| ribosome recycling factor [Bacillus coagulans 36D1] Length = 186 Score = 157 bits (397), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 75/184 (40%), Positives = 122/184 (66%), Gaps = 2/184 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 NQVID KD+M I ++++ ++R GR + ++LD + ++ YG+ P+NQ+A+++V Sbjct: 4 NQVID--TAKDKMAKAIQAFQRELGSIRAGRANAALLDKITIDYYGARTPVNQLASISVP 61 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 E R++V+ +DK ++ +ER I +S+LGL P +G V+R+ +P TEERR LVK+ Sbjct: 62 EARLMVIQPYDKTVLGEIERAILKSDLGLTPNNDGSVIRLSIPPLTEERRKELVKLIKKE 121 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 AE++K+++RN+RRD D LKK K+G+ +ED D+QKITD I+ ID + K++ Sbjct: 122 AEEAKVAIRNVRRDANDELKKQEKNGEITEDEHRGFAEDVQKITDQHIQKIDKMTKTKEQ 181 Query: 182 EIMH 185 EIM Sbjct: 182 EIME 185 >gi|329767058|ref|ZP_08258586.1| ribosome-recycling factor [Gemella haemolysans M341] gi|328837783|gb|EGF87408.1| ribosome-recycling factor [Gemella haemolysans M341] Length = 185 Score = 157 bits (397), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 76/179 (42%), Positives = 119/179 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + N+ +RM I+ L++++ ++R G+ S ++LD + V+ YG P+NQVA V+V EP+ML Sbjct: 6 MNNLNERMEKAIASLRRELASIRAGKASAAVLDRLTVDYYGVPTPINQVAGVSVPEPKML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+S ++K ++ +E+ I S+LGLNP +G V+RI P TEERR L K+ +E +K Sbjct: 66 VISPYEKTLLGDIEKVIQASDLGLNPANDGTVIRIVFPALTEERRKELAKLVGKESEGAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRN+RRD MD +KK KS + +ED + +DIQK+TD I ID +EK+ E+M Sbjct: 126 VAVRNVRRDAMDSMKKLEKSSQITEDDLKGYSDDIQKVTDKFIAEIDKVTKEKQDELMS 184 >gi|325290374|ref|YP_004266555.1| ribosome recycling factor [Syntrophobotulus glycolicus DSM 8271] gi|324965775|gb|ADY56554.1| ribosome recycling factor [Syntrophobotulus glycolicus DSM 8271] Length = 185 Score = 157 bits (397), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 75/180 (41%), Positives = 119/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +++M T+ L+K+ +T+R G + SMLD + V+ YG+ P+NQVAN++V EPRML Sbjct: 6 VKETEEKMKKTLEVLRKEFVTIRAGSANQSMLDKIMVDYYGTPTPINQVANISVPEPRML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ W+K M+ VE+ I +S+LG+NP+ +G V+R+ +P+ T +RR +V+ AE+++ Sbjct: 66 VIQPWEKTMIQPVEKAIMKSDLGINPVNDGSVVRLVIPQLTADRRTEIVRTVKKKAEEAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +SVRNIRRD + +KK K SED + IQK+TD IK+ID +K+KEI Sbjct: 126 VSVRNIRRDMNEEIKKMEKDKTVSEDESKKGQEKIQKLTDKYIKDIDDVLSKKEKEITEV 185 >gi|238022655|ref|ZP_04603081.1| hypothetical protein GCWU000324_02564 [Kingella oralis ATCC 51147] gi|237865858|gb|EEP66994.1| hypothetical protein GCWU000324_02564 [Kingella oralis ATCC 51147] Length = 185 Score = 157 bits (397), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 77/174 (44%), Positives = 114/174 (65%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M ++ LK+++ +RTGR +LD V+V+ YGS VP++QVANVT+L+ R + V V++ Sbjct: 12 KMQRSLEVLKENLAKVRTGRAHTGLLDQVEVDYYGSAVPVSQVANVTLLDARTIGVKVYE 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 M A+VE+ I +SNLGLNP G V+R+P+P TEERR L+KV + AE ++S+RN+ Sbjct: 72 SNMAAAVEKAIRDSNLGLNPAAMGDVIRVPMPMLTEERRKDLIKVVRSEAEDGRVSIRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD DH+KK K + SED E IQK+TD I +D K++++M Sbjct: 132 RRDANDHIKKLLKDKEISEDEARRGEEAIQKLTDKAIAEVDKILAAKEEDLMAI 185 >gi|261866956|ref|YP_003254878.1| ribosome recycling factor [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412288|gb|ACX81659.1| ribosome recycling factor [Aggregatibacter actinomycetemcomitans D11S-1] Length = 185 Score = 157 bits (397), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 76/179 (42%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ +DRM ++ LK + +RTGR PS+LD ++V+ YGS PL Q+ANV + R L Sbjct: 7 QDAEDRMEKSLDALKGHIAKIRTGRAQPSLLDAIQVDYYGSATPLRQLANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+V+D+ ++ +VE+ I S+LGLNP G +R+P+P TEERR L+K+ A E+ K+ Sbjct: 67 VTVFDRSLIQAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRELIKIVKAEGEQGKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD D +K K + SE+ E IQK+TDS IK +D +K+KE++ F Sbjct: 127 AIRNVRRDANDKIKALLKDKEISENDQHKAEEVIQKLTDSFIKKVDDVLADKEKELLDF 185 >gi|170760155|ref|YP_001787743.1| ribosome recycling factor [Clostridium botulinum A3 str. Loch Maree] gi|238688518|sp|B1KWM1|RRF_CLOBM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|169407144|gb|ACA55555.1| ribosome recycling factor [Clostridium botulinum A3 str. Loch Maree] Length = 184 Score = 157 bits (397), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 77/180 (42%), Positives = 119/180 (66%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ ++MG +I LK+++ +++ GR +P+MLD + E YGS PLNQ+AN++V E R+L Sbjct: 6 LKKADEKMGKSIVALKRELASMKAGRANPAMLDRIDAEYYGSMTPLNQLANISVPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WDK + ++E+ I +S+LGLNP +G V+R+ +PE TEE R +VK E++K Sbjct: 66 LIQPWDKSSMGAIEKAILKSDLGLNPSNDGTVIRLVIPELTEETRKNIVKTVKKTGEETK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++R+IRRD D +K +K SED + E+DIQK TD IK IDS K+KEI+ Sbjct: 126 VAIRSIRRDCNDDVKNLKKDD-VSEDDIKKTEDDIQKKTDKYIKEIDSIISAKEKEILSI 184 >gi|229845859|ref|ZP_04465971.1| ribosome recycling factor [Haemophilus influenzae 7P49H1] gi|229810863|gb|EEP46580.1| ribosome recycling factor [Haemophilus influenzae 7P49H1] Length = 185 Score = 157 bits (396), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 77/186 (41%), Positives = 119/186 (63%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +NQ+ ++ +DRM ++ LK + +RTGR PS+LD ++VE YG+ PL Q+ANV Sbjct: 2 LNQI--KKDAQDRMEKSLEALKGHISKIRTGRAQPSLLDAIQVEYYGAATPLRQLANVVA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R L V+V+D+ ++++VE+ I S+LGLNP G +R+P+P TEERR L+K+ Sbjct: 60 EDARTLAVTVFDRSLISAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRNLIKIVKG 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E+ K+++RN+RRD D +K K + SE+ E +IQKITD IK +D +K+ Sbjct: 120 EGEQGKVAIRNVRRDANDKIKALLKDKEISENEQHKAEEEIQKITDIYIKKVDEVLADKE 179 Query: 181 KEIMHF 186 KE+M F Sbjct: 180 KELMDF 185 >gi|158320548|ref|YP_001513055.1| ribosome recycling factor [Alkaliphilus oremlandii OhILAs] gi|166991552|sp|A8MHH2|RRF_ALKOO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|158140747|gb|ABW19059.1| ribosome recycling factor [Alkaliphilus oremlandii OhILAs] Length = 185 Score = 157 bits (396), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 74/179 (41%), Positives = 124/179 (69%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N++++M TI+ LK ++ ++R GR +P+MLD + VE YGS P+ Q+A +T EPR++ Sbjct: 7 KNLEEKMNKTINALKDELASIRAGRANPAMLDRIVVEYYGSPTPIKQIAAITAPEPRIIS 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +D ++S+E+ I +S+LG+NP +G+++RI VP+ TEERR L KVA +E +K+ Sbjct: 67 IQPYDGSALSSIEKAILQSDLGVNPSNDGKLIRIIVPQLTEERRKELTKVAKKTSEDAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +RN RR+ D LKK +K + +ED + + ++++QKITD IK +D E+K+K+IM Sbjct: 127 VLRNERRNANDRLKKMQKDNEITEDELKTAQDEVQKITDKFIKMVDELTEKKEKDIMEV 185 >gi|253573556|ref|ZP_04850899.1| ribosome recycling factor [Paenibacillus sp. oral taxon 786 str. D14] gi|251847084|gb|EES75089.1| ribosome recycling factor [Paenibacillus sp. oral taxon 786 str. D14] Length = 184 Score = 157 bits (396), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 78/185 (42%), Positives = 118/185 (63%), Gaps = 2/185 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M Q I ++ ++RM I L++D+ TLR GR +PS+LD ++V+ YGS P+NQ+AN+ Sbjct: 1 MPQTIK-KHAEERMEKAIQALRRDLSTLRAGRATPSLLDRIQVDYYGSPTPINQLANINT 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R L++ WDK ++ +ER I +S+LGL P +G +R+ +P TEERR+ LVK+ Sbjct: 60 PDSRTLLIQPWDKSSLSEIERAIQKSDLGLTPANDGSSIRLTIPALTEERRIELVKMTKK 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 + E++K+++RNIRRD D +KK K+ SED + DIQK TD I +D K+ Sbjct: 120 FGEEAKVAIRNIRRDANDDIKKLEKTD-ISEDESRRHQEDIQKTTDKFIAEVDKVLAAKE 178 Query: 181 KEIMH 185 KEIM Sbjct: 179 KEIME 183 >gi|217967587|ref|YP_002353093.1| ribosome recycling factor [Dictyoglomus turgidum DSM 6724] gi|217336686|gb|ACK42479.1| ribosome recycling factor [Dictyoglomus turgidum DSM 6724] Length = 185 Score = 157 bits (396), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 75/179 (41%), Positives = 115/179 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + I+++M + +KK+ +RTG+ S + D +KV YG+ +PLNQVA + V E R + Sbjct: 6 FKEIEEKMKKAVEVVKKEFQNIRTGKPSVGIFDEIKVSYYGNMMPLNQVATLKVAEGRTV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WDK ++ +E+ I +S LGL P +GQV+R+ P TEERR LVK+ H AE + Sbjct: 66 LIQPWDKSIIGEIEKAILKSELGLTPQNDGQVIRVVFPPLTEERRKELVKIVHKEAETGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +++RNIRRD ++ KK ++ GK SED L+ ++QKITD I+ I+ E K+KEIM Sbjct: 126 VAIRNIRRDYLEIFKKEKQEGKISEDEFYRLQEELQKITDKFIEEIEKLIEMKEKEIME 184 >gi|269966254|ref|ZP_06180343.1| Ribosome-recycling factor [Vibrio alginolyticus 40B] gi|269829169|gb|EEZ83414.1| Ribosome-recycling factor [Vibrio alginolyticus 40B] Length = 185 Score = 157 bits (396), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 77/179 (43%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK ++ +RTGR PS+L + VE YG+ PLNQVANV + R L Sbjct: 7 KDAQERMDKSVEALKNNLSKIRTGRAHPSLLSGISVEYYGAATPLNQVANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DKE+ VE+ I S+LGLNP+ G ++R+P+P TEERR LVK+ AE ++ Sbjct: 67 ITVFDKELTPKVEKAIMTSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD + LK K + SED +++IQK+TD +K ID K+KE+M Sbjct: 127 AVRNIRRDANNDLKALLKDKEISEDEDRKAQDEIQKLTDVAVKKIDEVLAAKEKELMEV 185 >gi|224368820|ref|YP_002602981.1| ribosome recycling factor [Desulfobacterium autotrophicum HRM2] gi|259494538|sp|C0QB20|RRF_DESAH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|223691536|gb|ACN14819.1| Frr [Desulfobacterium autotrophicum HRM2] Length = 185 Score = 157 bits (396), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 77/176 (43%), Positives = 114/176 (64%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 +DRM ++ L+K+M +RTGR S +MLD VKV+ YG+ PLNQ+A++ + E RM+ V Sbjct: 10 RDRMVKSVKTLEKEMTRVRTGRASMTMLDGVKVDYYGTLTPLNQMASIAIPESRMITVQP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 WD + VE+GI ++N+GL P +G+++RI +P TE+RR + K H E+ K++VR Sbjct: 70 WDISAIKEVEKGILKANIGLTPSSDGKIIRITIPPLTEDRRREIAKTVHNTCEEFKVAVR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 NIRRD D LK +K G SED + ++Q ITD IK I++ F K+KEI+ Sbjct: 130 NIRRDSNDTLKSLQKDGDISEDENFKAQKEVQDITDEFIKQIEAVFAAKEKEILEL 185 >gi|329769638|ref|ZP_08261042.1| ribosome-recycling factor [Gemella sanguinis M325] gi|328838393|gb|EGF88002.1| ribosome-recycling factor [Gemella sanguinis M325] Length = 185 Score = 157 bits (396), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 74/179 (41%), Positives = 118/179 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + N+ +RM I+ L++++ ++R G+ S S+LD + V+ YG P+NQVA ++V EP+ML Sbjct: 6 MNNLNERMEKAIANLRRELASIRAGKASASVLDRLTVDYYGVATPINQVAGISVPEPKML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+S ++K ++ +E+ I S+LGLNP +G V+RI P TEERR L K+ +E +K Sbjct: 66 VISPYEKTLLGDIEKAIQASDLGLNPANDGTVIRIVFPALTEERRKELAKLVGKESEGAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRN+RRD MD +KK K+ + +ED + +DIQK TD + ID +EK+ E+M Sbjct: 126 VAVRNVRRDAMDSMKKLEKASQITEDDLKGYSDDIQKATDKYVAEIDKVTKEKQDELMS 184 >gi|227484637|ref|ZP_03914953.1| ribosome recycling factor [Anaerococcus lactolyticus ATCC 51172] gi|227237357|gb|EEI87372.1| ribosome recycling factor [Anaerococcus lactolyticus ATCC 51172] Length = 186 Score = 157 bits (396), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 73/172 (42%), Positives = 112/172 (65%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M T+ +K + T++ GR + ++LD + YG+ P+NQ A V++ E R+LV+ WDK Sbjct: 14 MQKTVDSFEKRIATIKAGRATEAILDGITFSYYGTETPINQAATVSIPEARLLVIKPWDK 73 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 + +E+ I +SN+G+ P +G+++R+P P TE+RR K + YAE +KI VRN+R Sbjct: 74 NNIGPIEKAILKSNIGITPGNDGEIIRLPFPALTEDRRKEYTKEVNTYAEDAKIVVRNVR 133 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 RD MD +KKS KSG +ED LE++IQK+TD IK I+ E+K KE+M+ Sbjct: 134 RDSMDEVKKSEKSGDITEDDRYKLEDEIQKVTDKFIKTIEEMTEKKNKELMN 185 >gi|68249403|ref|YP_248515.1| ribosome recycling factor [Haemophilus influenzae 86-028NP] gi|145630555|ref|ZP_01786335.1| ribosome recycling factor [Haemophilus influenzae R3021] gi|145632167|ref|ZP_01787902.1| ribosome recycling factor [Haemophilus influenzae 3655] gi|145634780|ref|ZP_01790488.1| ribosome recycling factor [Haemophilus influenzae PittAA] gi|145636632|ref|ZP_01792299.1| ribosome recycling factor [Haemophilus influenzae PittHH] gi|145640909|ref|ZP_01796491.1| ribosome recycling factor [Haemophilus influenzae R3021] gi|229844676|ref|ZP_04464815.1| ribosome recycling factor [Haemophilus influenzae 6P18H1] gi|260581625|ref|ZP_05849422.1| ribosome recycling factor [Haemophilus influenzae NT127] gi|319775258|ref|YP_004137746.1| ribosome recycling factor [Haemophilus influenzae F3047] gi|319897698|ref|YP_004135895.1| ribosome recycling factor [Haemophilus influenzae F3031] gi|329122815|ref|ZP_08251387.1| ribosome recycling factor [Haemophilus aegyptius ATCC 11116] gi|81336171|sp|Q4QM92|RRF_HAEI8 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|68057602|gb|AAX87855.1| ribosome recycling factor [Haemophilus influenzae 86-028NP] gi|144983945|gb|EDJ91387.1| ribosome recycling factor [Haemophilus influenzae R3021] gi|144987074|gb|EDJ93604.1| ribosome recycling factor [Haemophilus influenzae 3655] gi|145267946|gb|EDK07942.1| ribosome recycling factor [Haemophilus influenzae PittAA] gi|145270158|gb|EDK10094.1| ribosome recycling factor [Haemophilus influenzae PittHH] gi|145274423|gb|EDK14287.1| ribosome recycling factor [Haemophilus influenzae 22.4-21] gi|229812390|gb|EEP48080.1| ribosome recycling factor [Haemophilus influenzae 6P18H1] gi|260095218|gb|EEW79109.1| ribosome recycling factor [Haemophilus influenzae NT127] gi|301169527|emb|CBW29128.1| ribosome recycling factor [Haemophilus influenzae 10810] gi|309973700|gb|ADO96901.1| Ribosome releasing factor [Haemophilus influenzae R2846] gi|317433204|emb|CBY81578.1| ribosome recycling factor [Haemophilus influenzae F3031] gi|317449849|emb|CBY86059.1| ribosome recycling factor [Haemophilus influenzae F3047] gi|327472079|gb|EGF17517.1| ribosome recycling factor [Haemophilus aegyptius ATCC 11116] Length = 185 Score = 157 bits (396), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 77/186 (41%), Positives = 119/186 (63%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +NQ+ ++ +DRM ++ LK + +RTGR PS+LD ++VE YG+ PL Q+ANV Sbjct: 2 LNQI--KKDAQDRMEKSLEALKGHISKIRTGRAQPSLLDAIQVEYYGAATPLRQLANVVA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R L V+V+D+ ++++VE+ I S+LGLNP G +R+P+P TEERR L+K+ Sbjct: 60 EDARTLAVTVFDRSLISAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIVKG 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E+ K+++RN+RRD D +K K + SE+ E +IQKITD IK +D +K+ Sbjct: 120 EGEQGKVAIRNVRRDANDKIKALLKDKEISENEQHKAEEEIQKITDIYIKKVDEVLADKE 179 Query: 181 KEIMHF 186 KE+M F Sbjct: 180 KELMDF 185 >gi|145628296|ref|ZP_01784097.1| ribosome recycling factor [Haemophilus influenzae 22.1-21] gi|145638390|ref|ZP_01794000.1| ribosome recycling factor [Haemophilus influenzae PittII] gi|144980071|gb|EDJ89730.1| ribosome recycling factor [Haemophilus influenzae 22.1-21] gi|145272719|gb|EDK12626.1| ribosome recycling factor [Haemophilus influenzae PittII] gi|309751530|gb|ADO81514.1| Ribosome releasing factor [Haemophilus influenzae R2866] Length = 185 Score = 157 bits (396), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 77/186 (41%), Positives = 119/186 (63%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +NQ+ ++ +DRM ++ LK + +RTGR PS+LD ++VE YG+ PL Q+ANV Sbjct: 2 LNQI--KKDAQDRMEKSLEALKGHISKIRTGRAQPSLLDAIQVEYYGAATPLRQLANVVA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R L V+V+D+ ++++VE+ I S+LGLNP G +R+P+P TEERR L+K+ Sbjct: 60 EDARTLAVTVFDRSLISAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIVKG 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E+ K+++RN+RRD D +K K + SE+ E +IQKITD IK +D +K+ Sbjct: 120 EGEQGKVAIRNVRRDANDKIKALLKDKEISENEQHKAEEEIQKITDIYIKKVDEVLTDKE 179 Query: 181 KEIMHF 186 KE+M F Sbjct: 180 KELMDF 185 >gi|303325662|ref|ZP_07356105.1| ribosome recycling factor [Desulfovibrio sp. 3_1_syn3] gi|302863578|gb|EFL86509.1| ribosome recycling factor [Desulfovibrio sp. 3_1_syn3] Length = 186 Score = 157 bits (396), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 76/180 (42%), Positives = 120/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +DRM ++ L +D LRTGR S +++D +K + YG+ P++Q+A+V V + R L Sbjct: 7 LLDAEDRMEKALAALDRDFAKLRTGRASTALVDGIKADYYGTPTPVSQMASVAVPDSRTL 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK +A+VE+ I +S+LGL P+ +G+++RI +P TEERR LVKVA Y+E++K Sbjct: 67 TIQPWDKGGIAAVEKAILKSDLGLTPVNDGKIIRIVIPPLTEERRKDLVKVARKYSEEAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RRD D LKK K + +ED + +D+QK+TD + ++D K+KEIM Sbjct: 127 VAVRNVRRDANDGLKKLEKDKEITEDELKKAVDDVQKLTDKFVGDVDKKCAGKEKEIMDI 186 >gi|317495174|ref|ZP_07953544.1| ribosome recycling protein [Gemella moribillum M424] gi|316914596|gb|EFV36072.1| ribosome recycling protein [Gemella moribillum M424] Length = 185 Score = 157 bits (396), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 74/179 (41%), Positives = 119/179 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + N+ +RM I+ L++++ ++R G+ S ++LD + V+ YG P+NQVA V+V EP+ML Sbjct: 6 MNNLNERMEKAIASLRRELASIRAGKASAAVLDRLTVDYYGVATPINQVAGVSVPEPKML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+S ++K ++ +ER I S+LGLNP +G V+RI P TEERR L K+ +E +K Sbjct: 66 VISPYEKTLLGDIERAIQASDLGLNPSNDGSVIRIVFPALTEERRKELAKLVGKESEGAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRN+RRD +D +KK K+ + +ED + +DIQK+TD + ID +EK+ E+M Sbjct: 126 VAVRNVRRDAIDAMKKLEKASQITEDDLKGYSDDIQKVTDKFVAEIDKVTKEKQDELMS 184 >gi|15603852|ref|NP_246926.1| ribosome recycling factor [Pasteurella multocida subsp. multocida str. Pm70] gi|13431830|sp|P57984|RRF_PASMU RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|12722427|gb|AAK04071.1| Errf [Pasteurella multocida subsp. multocida str. Pm70] Length = 185 Score = 157 bits (396), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 75/174 (43%), Positives = 113/174 (64%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM ++ K + +RTGR PS+LD ++VE YGS PL Q+ANV + R L V+V+D Sbjct: 12 RMEKSLETFKNHIAKVRTGRAQPSLLDGIQVEYYGSPTPLRQLANVVAEDARTLAVTVFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + ++++VE+ I S+LGLNP G +R+P+P TEERR L+K+ AE+ KI+VRN+ Sbjct: 72 RSLISAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIVKGEAEQGKIAVRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD D +K K + SED +++IQKITD+ +K +D +K+KE++ F Sbjct: 132 RRDANDQIKALLKDKEISEDEERKAQDEIQKITDTFVKKVDEVLADKEKELLDF 185 >gi|152978335|ref|YP_001343964.1| ribosome recycling factor [Actinobacillus succinogenes 130Z] gi|171704207|sp|A6VM32|RRF_ACTSZ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|150840058|gb|ABR74029.1| ribosome recycling factor [Actinobacillus succinogenes 130Z] Length = 185 Score = 157 bits (396), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 75/179 (41%), Positives = 116/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ +DRM ++ LK + +RTGR PS+LD ++V+ YG+ PL Q+ANV + R L Sbjct: 7 KDAQDRMEKSLEALKGHISKIRTGRAQPSLLDAIQVDYYGAATPLRQLANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+V+D+ ++ +VE+ I S+LGLNP G +R+P+P TEERR L K+ A E+ K+ Sbjct: 67 VTVFDRSLIQAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLTKLVKAEGEQGKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD + +K K + SE+ E+DIQK+TDS +K +D +K+KE+M F Sbjct: 127 AVRNVRRDANEKIKALLKDKEISENEQRKAEDDIQKLTDSFVKKVDEVLADKEKELMDF 185 >gi|170727617|ref|YP_001761643.1| ribosome recycling factor [Shewanella woodyi ATCC 51908] gi|238688707|sp|B1KNU0|RRF_SHEWM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|169812964|gb|ACA87548.1| ribosome recycling factor [Shewanella woodyi ATCC 51908] Length = 185 Score = 157 bits (396), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 78/178 (43%), Positives = 111/178 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ +DRM + K M +RTGR PS+LD +KV YGS PL QV NV++ + R L Sbjct: 7 KDAQDRMDKCVEATKTQMAKVRTGRAHPSLLDSIKVPYYGSLTPLKQVGNVSIEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +SV+D M+ +VE+ I S+LGLNP+ G +R+P+P TEERR L+KV A AE +I Sbjct: 67 ISVFDSTMIPAVEKAIMSSDLGLNPMSAGATIRVPLPALTEERRKDLIKVVRAEAENGRI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +VRN+RRD +K K + +ED V E+++QK TD+ IK ID K+ E+M Sbjct: 127 AVRNVRRDANSDVKALEKEKECTEDDVHRSEDEVQKFTDAHIKLIDEILAAKEAELME 184 >gi|187778975|ref|ZP_02995448.1| hypothetical protein CLOSPO_02570 [Clostridium sporogenes ATCC 15579] gi|187772600|gb|EDU36402.1| hypothetical protein CLOSPO_02570 [Clostridium sporogenes ATCC 15579] Length = 184 Score = 157 bits (396), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 76/180 (42%), Positives = 120/180 (66%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ ++MG TI LK+++ +++ GR +P+MLD ++ E YGS PLNQ+ N++V E R+L Sbjct: 6 LKKADEKMGKTIVALKRELASMKAGRANPAMLDRIEAEYYGSMTPLNQLGNISVPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WDK ++++E+ I +S+LGLNP +G V+R+ +PE TEE R +VK E++K Sbjct: 66 LIQPWDKSALSAIEKAILKSDLGLNPSNDGTVIRLVIPELTEETRKNIVKTVKKTGEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++R+IRRD D +K +K SED + E+DIQK TD IK +DS K+KEI+ Sbjct: 126 VAIRSIRRDCNDDVKNLKKDD-VSEDDIKKAEDDIQKKTDKYIKEVDSIISVKEKEILSI 184 >gi|313904228|ref|ZP_07837607.1| ribosome recycling factor [Eubacterium cellulosolvens 6] gi|313471030|gb|EFR66353.1| ribosome recycling factor [Eubacterium cellulosolvens 6] Length = 184 Score = 157 bits (396), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 77/173 (44%), Positives = 111/173 (64%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 ++M TI+ L ++ T+R GR +P +LD + VE YG+ PL QVAN+TV E R++ + W Sbjct: 10 EKMTKTIANLDSELATIRAGRANPHVLDRITVEYYGAPTPLQQVANITVPEARIIQIQPW 69 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 + MV + + I S LG+NP +G+V+R+ PE TE+RR L K E +K+++RN Sbjct: 70 EASMVKEIVKAIQMSELGINPSTDGKVVRLIFPELTEDRRKELTKDVKKKGEAAKVAIRN 129 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 IRRD D KK K+ SED++A LE D+QK+TD IK+ID E K KE+M Sbjct: 130 IRRDANDSFKKLEKAEDLSEDIIAGLEEDVQKLTDKYIKDIDKAVEVKSKELM 182 >gi|116327676|ref|YP_797396.1| ribosome recycling factor [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330591|ref|YP_800309.1| ribosome recycling factor [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122281654|sp|Q04U69|RRF_LEPBJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|122284528|sp|Q053N2|RRF_LEPBL RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|116120420|gb|ABJ78463.1| Ribosome recycling factor [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124280|gb|ABJ75551.1| Ribosome recycling factor [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 184 Score = 157 bits (396), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 77/177 (43%), Positives = 120/177 (67%), Gaps = 2/177 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + +K +M TI +KKD T+RTGR +PS+++ ++V+ YG+ P+NQ+ N++V EPRML Sbjct: 7 ISGMKTKMDKTIDLVKKDFGTVRTGRANPSLVEDIRVDYYGTLTPINQLGNISVPEPRML 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+S +DK ++ +E+ I S LGL P +G V+RI +PE T ERR L K+ + +E+ K Sbjct: 67 VISPYDKGIMKDIEKAIQASGLGLQPSNDGVVIRIIIPELTGERRKELAKIVKSKSEEKK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +++RNIRRD M+ LKK + S+D + ++++ IQK TDS I I + EK+KEI Sbjct: 127 VAIRNIRRDAMEDLKKHTEG--LSQDEIKTIQDRIQKTTDSYIDKISALTAEKEKEI 181 >gi|172057857|ref|YP_001814317.1| ribosome recycling factor [Exiguobacterium sibiricum 255-15] gi|229564225|sp|B1YI73|RRF_EXIS2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|171990378|gb|ACB61300.1| ribosome recycling factor [Exiguobacterium sibiricum 255-15] Length = 185 Score = 156 bits (395), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 79/185 (42%), Positives = 119/185 (64%), Gaps = 1/185 (0%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+Q I ++ ++RM LKK++ TLR GR + S+LD V+V+ YGS PLNQVANV Sbjct: 1 MSQAI-MKQAEERMEKAHLSLKKELATLRAGRANVSILDPVQVDYYGSPTPLNQVANVNT 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R+++++ WDK MV +E+ I ++LGL P +G V+R+ +P TE+RR LVK+ Sbjct: 60 PEARLILITPWDKSMVTEIEKAIQRADLGLAPSSDGTVIRLAIPPLTEDRRKELVKLVKK 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 Y E+ K+++RNIRRD + LKK K G +ED + D+Q +TD +K +D +K+ Sbjct: 120 YTEEGKVALRNIRRDTNEQLKKQEKDGVLTEDDLRGYTEDVQTLTDKFVKVLDQTAADKE 179 Query: 181 KEIMH 185 +EIM Sbjct: 180 QEIME 184 >gi|125625049|ref|YP_001033532.1| Frr protein [Lactococcus lactis subsp. cremoris MG1363] gi|166230795|sp|A2RNG1|RRF_LACLM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|124493857|emb|CAL98850.1| Frr protein [Lactococcus lactis subsp. cremoris MG1363] gi|300071855|gb|ADJ61255.1| ribosome recycling factor [Lactococcus lactis subsp. cremoris NZ9000] Length = 185 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 75/176 (42%), Positives = 121/176 (68%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 ++RM +++ L++D+ LR GR + S+LD V+V YG+ PLNQ+A++T+ E R+L+V+ Sbjct: 10 QERMKHSLASLQRDLGHLRAGRANASLLDRVQVVYYGAPTPLNQLASITIPEARVLMVTP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +DK ++ +E+ ++ES+LG+ P +G V+R+ +P TEERR LVK Y E +K+++R Sbjct: 70 FDKSILKDIEKALYESDLGITPANDGSVIRLVIPMLTEERRRELVKEMGKYIESAKVAIR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 NIRRD MD KKS K+ + +ED + LEN+IQK+TD +K D K+KE++ Sbjct: 130 NIRRDAMDTAKKSEKAKEITEDDLKDLENEIQKVTDDAVKEADRLASVKEKELLDI 185 >gi|91223476|ref|ZP_01258741.1| ribosome releasing factor [Vibrio alginolyticus 12G01] gi|262393522|ref|YP_003285376.1| ribosome recycling factor [Vibrio sp. Ex25] gi|91191562|gb|EAS77826.1| ribosome releasing factor [Vibrio alginolyticus 12G01] gi|262337116|gb|ACY50911.1| ribosome recycling factor [Vibrio sp. Ex25] Length = 185 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 77/179 (43%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK ++ +RTGR PS+L + VE YG+ PLNQVANV + R L Sbjct: 7 KDAQERMDKSVEALKNNLSKIRTGRAHPSLLSGISVEYYGAATPLNQVANVIAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DKE+ VE+ I S+LGLNP+ G ++R+P+P TEERR LVK+ AE ++ Sbjct: 67 ITVFDKELTPKVEKAIMTSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD + LK K + SED +++IQK+TD +K ID K+KE+M Sbjct: 127 AVRNIRRDANNDLKALLKDKEISEDEDRKAQDEIQKLTDVAVKKIDEVLAAKEKELMEV 185 >gi|260913177|ref|ZP_05919659.1| ribosome recycling factor [Pasteurella dagmatis ATCC 43325] gi|260632764|gb|EEX50933.1| ribosome recycling factor [Pasteurella dagmatis ATCC 43325] Length = 185 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 76/179 (42%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM ++ K + +RTGR PS+LD ++VE YGS PL Q+ANV + R L Sbjct: 7 KDTQARMEKSLETFKNHIAKVRTGRAQPSLLDGIQVEYYGSPTPLRQLANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+V+D+ ++++VE+ I S+LGLNP G +R+P+P TEERR L+K+ AE+ KI Sbjct: 67 VTVFDRSLISAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIVKGEAEQGKI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD D +K K + SED +++IQKITD +K +D +K+KE+M F Sbjct: 127 AVRNVRRDANDQIKALLKDKEISEDEERKAQDEIQKITDLYVKKVDEVLADKEKELMDF 185 >gi|270264817|ref|ZP_06193081.1| ribosome-recycling factor [Serratia odorifera 4Rx13] gi|270041115|gb|EFA14215.1| ribosome-recycling factor [Serratia odorifera 4Rx13] Length = 199 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 77/174 (44%), Positives = 116/174 (66%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM ++ K + +RTGR SPS+LD + VE YGS PL Q+ANVTV + R L ++++D Sbjct: 26 RMEKSVEAFKTQISKIRTGRASPSILDGIMVEYYGSATPLRQLANVTVEDSRTLAINLFD 85 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + + ++VE+ I S+LGLNP G V+R+P+P TEERR L+KV AE+ +++VRN+ Sbjct: 86 RSLGSAVEKAIMSSDLGLNPSSAGSVIRVPLPPLTEERRKDLIKVVRNEAEQGRVAVRNV 145 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD D +K K + SED ++D+QK+TD+ IK +D+ +K+KE+M F Sbjct: 146 RRDANDKVKALLKDKEISEDEDRRSQDDVQKLTDAYIKLLDAALADKEKELMEF 199 >gi|187928370|ref|YP_001898857.1| ribosome recycling factor [Ralstonia pickettii 12J] gi|238691813|sp|B2UB09|RRF_RALPJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|187725260|gb|ACD26425.1| ribosome recycling factor [Ralstonia pickettii 12J] Length = 186 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 79/177 (44%), Positives = 113/177 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N + +M +I LK D+ +RTGR +LD V+V+ YGS VP++QVANVT+++ R + Sbjct: 8 KNAEQKMQKSIEALKTDLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVANVTLVDARTIG 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K+MV +VE+ I E++LGLNP G ++R+P P TEERR L KV E +K+ Sbjct: 68 VQPWEKKMVQAVEKAIREADLGLNPATMGDIIRVPTPALTEERRKELTKVVKGEGEDAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +VRN+RRD + LKK K SED +++QK+TD + ID EK KEIM Sbjct: 128 AVRNLRRDANEQLKKLVKDKAISEDDERRGGDEVQKLTDKFVAEIDKLVAEKDKEIM 184 >gi|239631340|ref|ZP_04674371.1| ribosome recycling factor [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066628|ref|YP_003788651.1| ribosome recycling factor [Lactobacillus casei str. Zhang] gi|239525805|gb|EEQ64806.1| ribosome recycling factor [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300439035|gb|ADK18801.1| Ribosome recycling factor [Lactobacillus casei str. Zhang] Length = 185 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 78/185 (42%), Positives = 118/185 (63%), Gaps = 2/185 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 NQ+ID + MG T L++++ +R GR + S+L+ + VE YG+ PLNQ+A +T+ Sbjct: 3 NQIIDQAKVN--MGKTEESLQRELGNIRAGRANASLLNQITVEYYGAPTPLNQMAAITIP 60 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 EPR+L VS +DK + ++E ++ S+LG+NP +G V+R+ +P+ T ERR + K Y Sbjct: 61 EPRVLQVSPYDKSSLKNIETALNASDLGINPANDGDVIRLVIPQLTGERRKEIAKEVGKY 120 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 +E +KI+VRNIRR+G+D LK+ K G +ED + LE D+QK TD K ID K+K Sbjct: 121 SESAKIAVRNIRREGLDKLKRQEKDGDITEDDLHRLEKDMQKATDDATKRIDEIAAAKEK 180 Query: 182 EIMHF 186 EI Sbjct: 181 EITEV 185 >gi|148265750|ref|YP_001232456.1| ribosome recycling factor [Geobacter uraniireducens Rf4] gi|189044056|sp|A5G7W5|RRF_GEOUR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|146399250|gb|ABQ27883.1| ribosome recycling factor [Geobacter uraniireducens Rf4] Length = 185 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 77/179 (43%), Positives = 113/179 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + N+ M TI L+K+ +RTGR S +LD +KV+ YG+ P+NQVA + V EPR + Sbjct: 6 INNMSTHMDKTIDALRKEYQRVRTGRASTGLLDEIKVDFYGTPSPINQVATLAVPEPRTI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WD +M+ +E+ I +NLGL P +G+V+R+ +P TEERR +VK AE +K Sbjct: 66 TLQPWDAKMIPVIEKAIMNANLGLTPANDGKVIRLNIPPLTEERRKDIVKQLKKLAEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRNIRRD +D LKK K K SED + E ++Q +T+S + ID F K+KE+M Sbjct: 126 VAVRNIRRDAIDELKKQEKDKKISEDDLKRAEKEVQDVTNSHVAKIDEVFVHKEKEVME 184 >gi|291296165|ref|YP_003507563.1| ribosome recycling factor [Meiothermus ruber DSM 1279] gi|290471124|gb|ADD28543.1| ribosome recycling factor [Meiothermus ruber DSM 1279] Length = 185 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 78/174 (44%), Positives = 112/174 (64%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 + M ++ L+ + T+RTGR +P++L+ +KVE YGS +PLNQV V+ +PR LVV Sbjct: 10 RQHMQKSLEALEHHLTTMRTGRANPAILNNIKVEYYGSTMPLNQVGTVSSPDPRTLVVQS 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 WD M+ +E+ I +S+LGLNP +G L I +P TEERR LVK YAE+++I+VR Sbjct: 70 WDPNMLKEIEKAIRDSDLGLNPTNKGDALYISIPPLTEERRRDLVKSVKQYAEEARIAVR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 NIRR+ +D KK K SED + E +IQKITD + ID +K++EI+ Sbjct: 130 NIRREALDKAKKLEKEKHLSEDDIKRAEAEIQKITDEFVHKIDEALHKKEQEIL 183 >gi|325105870|ref|YP_004275524.1| ribosome recycling factor [Pedobacter saltans DSM 12145] gi|324974718|gb|ADY53702.1| ribosome recycling factor [Pedobacter saltans DSM 12145] Length = 187 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 86/186 (46%), Positives = 116/186 (62%), Gaps = 3/186 (1%) Query: 1 MNQVI--DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 MN+ I +L+ K M I+ ++M +R G+ SPSMLD V VE YGS PL QVAN+ Sbjct: 1 MNEFIKLELEEAKATMQKAITHTDNELMKIRAGKASPSMLDGVLVEYYGSPTPLAQVANI 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 + R +VV W+K M+ +E+GI SN GLNP +G V+R+ VP TEERR LVK A Sbjct: 61 NTPDARTIVVQPWEKSMIGPIEKGILNSNCGLNPQNDGSVVRLNVPPLTEERRKQLVKQA 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 AE KIS+RNIR++ + +KK + G SED + + E ++QKITD I ID E Sbjct: 121 KEEAEAGKISIRNIRKNTNESIKKLKSEG-VSEDEIKAGEAEVQKITDGFIAKIDVMIEG 179 Query: 179 KKKEIM 184 K+K+IM Sbjct: 180 KEKDIM 185 >gi|312866459|ref|ZP_07726677.1| ribosome recycling factor [Streptococcus downei F0415] gi|311098153|gb|EFQ56379.1| ribosome recycling factor [Streptococcus downei F0415] Length = 185 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 79/183 (43%), Positives = 118/183 (64%), Gaps = 2/183 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 N +ID N +R + L ++ +R GR + S+LD ++V+ YG+ PLNQ+A++TV Sbjct: 3 NPIIDKAN--ERFKHSHEALGREFSAIRAGRANASLLDRIEVDYYGAPTPLNQLASITVP 60 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 E R+L++S +DK + +ER I+ES+LG+NP +G V+R+ +P TEE R L K Sbjct: 61 EARVLLISPFDKNSIKEIERAINESDLGINPANDGSVIRLVIPALTEETRKDLAKEVKKL 120 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 E +K+++RNIRRD MD KK K + +ED + SLE DIQK TD +K IDS EK+K Sbjct: 121 GENAKVAIRNIRRDAMDDAKKQEKDKEITEDELKSLEKDIQKATDDAVKKIDSMTNEKEK 180 Query: 182 EIM 184 E++ Sbjct: 181 ELL 183 >gi|210622737|ref|ZP_03293329.1| hypothetical protein CLOHIR_01277 [Clostridium hiranonis DSM 13275] gi|210154069|gb|EEA85075.1| hypothetical protein CLOHIR_01277 [Clostridium hiranonis DSM 13275] Length = 185 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 77/178 (43%), Positives = 116/178 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++ +M TI LK + T+R GR + +MLD V+V+ YG+ P+NQ+A ++V EPR L+ Sbjct: 7 EQLEQKMDATIEALKFEFGTIRAGRANAAMLDKVRVDYYGTLTPINQMAAISVPEPRTLM 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++ WDK + +E+ I S++GL P +G V+R+ VP TEERR L K AH +E K+ Sbjct: 67 ITPWDKSSMHEIEKAIANSDVGLTPSNDGSVIRLSVPALTEERRKELAKKAHKASEDFKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +RN RRD D LKK K+G+ +ED + ++QKITD IK IDS + +K+K+IM Sbjct: 127 RIRNERRDANDKLKKIEKAGEITEDELKKATEEVQKITDKYIKEIDSLYAKKEKDIME 184 >gi|116512953|ref|YP_811860.1| ribosome recycling factor [Lactococcus lactis subsp. cremoris SK11] gi|123320141|sp|Q02WC5|RRF_LACLS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|116108607|gb|ABJ73747.1| ribosome recycling factor [Lactococcus lactis subsp. cremoris SK11] Length = 185 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 75/176 (42%), Positives = 121/176 (68%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 ++RM +++ L++D+ LR GR + S+LD V+V YG+ PLNQ+A++T+ E R+L+V+ Sbjct: 10 QERMKHSLASLQRDLGHLRAGRANASLLDRVQVVYYGAPTPLNQLASITIPEARVLMVTP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +DK ++ +E+ ++ES+LG+ P +G V+R+ +P TEERR LVK Y E +K+++R Sbjct: 70 FDKSILKDIEKSLYESDLGITPANDGSVIRLVIPMLTEERRRELVKEMGKYIESAKVAIR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 NIRRD MD KKS K+ + +ED + LEN+IQK+TD +K D K+KE++ Sbjct: 130 NIRRDAMDTAKKSEKAKEITEDDLKDLENEIQKVTDDAVKEADRLASVKEKELLDI 185 >gi|184155193|ref|YP_001843533.1| ribosome recycling factor [Lactobacillus fermentum IFO 3956] gi|260662307|ref|ZP_05863203.1| ribosome recycling factor [Lactobacillus fermentum 28-3-CHN] gi|183226537|dbj|BAG27053.1| ribosome recycling factor [Lactobacillus fermentum IFO 3956] gi|260553690|gb|EEX26582.1| ribosome recycling factor [Lactobacillus fermentum 28-3-CHN] Length = 186 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 76/179 (42%), Positives = 118/179 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K++M + LK+ + +R GR + S+L+ V VE YG+ PLNQ+A++T+ E R L Sbjct: 7 LAEAKEKMAKSGDALKRTLADIRAGRANASLLNTVTVEYYGAPTPLNQLASITIPEARQL 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +DK + +ER I+ESNLGL P +G+ +R+ VP+ TE+RR LVK A EK+K Sbjct: 67 LISPYDKTTLKDIERAIYESNLGLTPQNDGETIRLVVPQLTEDRRKELVKDVKAEMEKAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRN+RR+ MD LKK K G ++D LE +Q+ TD+ IKN++ +K+KE++ Sbjct: 127 VAVRNVRREAMDDLKKGNKDGDFNDDEFHDLEKQVQEETDAGIKNLEQIAADKEKELLE 185 >gi|85712041|ref|ZP_01043095.1| Ribosome recycling factor [Idiomarina baltica OS145] gi|85694227|gb|EAQ32171.1| Ribosome recycling factor [Idiomarina baltica OS145] Length = 185 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 78/180 (43%), Positives = 118/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +++ K+RM ++ L+ M +RTGR PS+LD V V YG PL Q+AN+T + R L Sbjct: 6 IKDAKERMEKSVESLRSQMSKVRTGRAHPSILDSVMVNYYGVDTPLKQLANITTEDSRTL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++V+DK +VE+ I S+LGLNP G V+RIP+P TEERR LVK+ A AE+++ Sbjct: 66 ALTVFDKSSAQAVEKAILTSDLGLNPASAGAVIRIPLPPLTEERRRDLVKIVRAEAEQAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD + LK+ K + +ED S E+D+QK+TD+ +K ID + K++++M Sbjct: 126 VAVRNIRRDANNDLKELLKEKEITEDEEHSAEDDVQKLTDTYVKKIDESLKAKEQDLMEV 185 >gi|255994878|ref|ZP_05428013.1| ribosome recycling factor [Eubacterium saphenum ATCC 49989] gi|255993591|gb|EEU03680.1| ribosome recycling factor [Eubacterium saphenum ATCC 49989] Length = 190 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 76/184 (41%), Positives = 121/184 (65%), Gaps = 2/184 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M ++ID N K++ TIS L ++ ++R GR +PS+LD ++V+ YG+ PL +AN++V Sbjct: 7 MKEIID--NFKEKGEKTISLLTGELNSVRAGRANPSLLDQIRVDYYGTPTPLKNIANISV 64 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 +P+ L++S +D + + + I+ES LG+NP+ +G+ +R+ VP+ TEERR + K+ Sbjct: 65 PDPKSLMISPFDPSAIKEIIKAINESELGINPLDDGKNIRLKVPQLTEERRKEITKMVKQ 124 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 + +KI++RN+RRD DHLKK+ K+G SED + DIQ TD K ID +EK+ Sbjct: 125 ITDDAKIAIRNLRRDANDHLKKAEKNGDISEDELKGDTKDIQTKTDEFTKKIDGMLKEKE 184 Query: 181 KEIM 184 KEIM Sbjct: 185 KEIM 188 >gi|149183486|ref|ZP_01861915.1| ribosome recycling factor [Bacillus sp. SG-1] gi|148848798|gb|EDL63019.1| ribosome recycling factor [Bacillus sp. SG-1] Length = 185 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 73/179 (40%), Positives = 117/179 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + N K+RM I +++ ++R GR + S+LD + V+ YG+ P+NQ+A ++V E RML Sbjct: 6 MSNTKERMTKAIQTFTRELASIRAGRANASLLDKITVDYYGAPTPVNQLAGISVPEARML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +DK + +E+ I +S+LG+ P +G +LRI +P+ TEERR LVK+ +E +K Sbjct: 66 VIQPYDKSALGDIEKAIMKSDLGITPSSDGNILRIVIPQLTEERRKDLVKLVKKESEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +++RNIRRD D KK K+G +ED + +D+QK+TD I IDS ++K+KEI+ Sbjct: 126 VAIRNIRRDANDEFKKLEKNGDITEDDLRGYSDDVQKLTDDHINQIDSIAKDKEKEILE 184 >gi|308068689|ref|YP_003870294.1| ribosome recycling factor (ribosome releasing factor) [Paenibacillus polymyxa E681] gi|305857968|gb|ADM69756.1| Ribosome recycling factor (Ribosome releasing factor) [Paenibacillus polymyxa E681] Length = 184 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 78/178 (43%), Positives = 113/178 (63%), Gaps = 1/178 (0%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM I L++D+ +LR GR +P++LD V+VE YG+ P+NQ+ANV + R L+ Sbjct: 7 KSAEERMQKAIQALQRDLASLRAGRATPALLDRVQVEYYGAMTPVNQLANVNTPDSRTLM 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + WDK +A +ER I +S+LGL P +G +R+ +P TEERR LVK+ E++KI Sbjct: 67 IQPWDKSSLADIERAIQKSDLGLTPSNDGNTIRLSIPALTEERRTDLVKLTKKNGEEAKI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++RNIRRD D +KK KS SED + DIQK TD I +D K+KEIM Sbjct: 127 AIRNIRRDANDDIKKLEKSD-ISEDESRKHQEDIQKTTDKFIAEVDKVLAAKEKEIME 183 >gi|78045140|ref|YP_360604.1| ribosome recycling factor [Carboxydothermus hydrogenoformans Z-2901] gi|123575922|sp|Q3AB80|RRF_CARHZ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|77997255|gb|ABB16154.1| ribosome recycling factor [Carboxydothermus hydrogenoformans Z-2901] Length = 185 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 73/180 (40%), Positives = 117/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ +D M I LKK+ T+R GR +P++L+ V VE YG+ +P+NQ+A ++ EPR+L Sbjct: 6 LKEAQDHMQKAIEVLKKEFATMRVGRATPALLEKVVVEYYGTQMPVNQLATISAPEPRLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK + ++E+ I +S+LG+ P +G V+R+ +P T+ERR LVKVA AE+++ Sbjct: 66 VIQPWDKGALGAIEKAILKSDLGITPTNDGSVIRLAIPPLTQERRQELVKVARKKAEEAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD D +K K SED ++++QK+TD IK +D + K+ EI+ Sbjct: 126 VAIRNIRRDANDRIKDLEKDKVISEDEGKRGQDEVQKLTDKFIKTVDELLKAKEDEILSI 185 >gi|304404282|ref|ZP_07385944.1| ribosome recycling factor [Paenibacillus curdlanolyticus YK9] gi|304347260|gb|EFM13092.1| ribosome recycling factor [Paenibacillus curdlanolyticus YK9] Length = 184 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 79/185 (42%), Positives = 118/185 (63%), Gaps = 2/185 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M Q I ++ ++RM I LK+D+ TLR GR +P++LD ++VE YG+ P+NQ+AN+ Sbjct: 1 MPQAIK-KDAEERMEKAIGALKRDLATLRAGRATPALLDRIQVEYYGAMTPVNQLANINT 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R L++ WDK +A++E+ I +S+LGL P +G +R+ +P TEERR LVK+ Sbjct: 60 PDSRTLLLQPWDKSSLAAIEKAIMKSDLGLTPSNDGSTIRLSIPALTEERRSELVKLTKK 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 + E++KI+VRNIRRD D +KK K SED ++DIQK TD + +D K+ Sbjct: 120 FGEEAKIAVRNIRRDANDDIKKLEKDA-ISEDESRRHQDDIQKTTDRFVGEVDKVLAAKE 178 Query: 181 KEIMH 185 KEIM Sbjct: 179 KEIME 183 >gi|303247584|ref|ZP_07333855.1| ribosome recycling factor [Desulfovibrio fructosovorans JJ] gi|302491064|gb|EFL50958.1| ribosome recycling factor [Desulfovibrio fructosovorans JJ] Length = 184 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 74/180 (41%), Positives = 118/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ +DRM ++ L K+ LRTGR + S+LD ++V+ YG+ PL+Q+A+V+ + R + Sbjct: 5 LKDAEDRMQKALASLDKEFARLRTGRATTSLLDGIRVDYYGTPTPLDQMASVSTPDSRTI 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WD++ VE+ I +S+LGL P+ +G+++RI +P TE+RR L KVA YAE++K Sbjct: 65 TIAPWDRKAFHDVEKAILKSDLGLTPVNDGKIIRISIPPLTEDRRKDLAKVAKKYAEEAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD D LKK + SED + D+QK+TD+ I D +K+KEIM Sbjct: 125 VAIRNIRRDANDALKKKKNDKAISEDDQHKGQEDVQKLTDAYIAKADDALAKKEKEIMEI 184 >gi|113461129|ref|YP_719197.1| ribosome recycling factor [Haemophilus somnus 129PT] gi|170717712|ref|YP_001784784.1| ribosome recycling factor [Haemophilus somnus 2336] gi|122945268|sp|Q0I379|RRF_HAES1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|189044058|sp|B0UUI5|RRF_HAES2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|112823172|gb|ABI25261.1| ribosome recycling factor [Haemophilus somnus 129PT] gi|168825841|gb|ACA31212.1| ribosome recycling factor [Haemophilus somnus 2336] Length = 185 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 73/179 (40%), Positives = 116/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM ++ L+ + +RTGR PS+LD ++VE YGS PL Q+ANV + R L Sbjct: 7 KDTQQRMEKSLETLRTHIAKIRTGRAQPSLLDGIQVEYYGSPTPLRQLANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+V+D+ ++++VE+ I S+LGLNP G +R+P+P TEERR L+K+ E+ KI Sbjct: 67 VTVFDRSLISAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIVKGEGEQGKI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD D +K K + SED +++IQKITD+ +K +D +K+KE++ F Sbjct: 127 AIRNVRRDANDQIKALLKDKEISEDEERKAQDEIQKITDTFVKKVDEILADKEKELLDF 185 >gi|126699754|ref|YP_001088651.1| ribosome recycling factor [Clostridium difficile 630] gi|254975733|ref|ZP_05272205.1| ribosome recycling factor [Clostridium difficile QCD-66c26] gi|255093120|ref|ZP_05322598.1| ribosome recycling factor [Clostridium difficile CIP 107932] gi|255101273|ref|ZP_05330250.1| ribosome recycling factor [Clostridium difficile QCD-63q42] gi|255307149|ref|ZP_05351320.1| ribosome recycling factor [Clostridium difficile ATCC 43255] gi|255314862|ref|ZP_05356445.1| ribosome recycling factor [Clostridium difficile QCD-76w55] gi|255517536|ref|ZP_05385212.1| ribosome recycling factor [Clostridium difficile QCD-97b34] gi|255650647|ref|ZP_05397549.1| ribosome recycling factor [Clostridium difficile QCD-37x79] gi|260683737|ref|YP_003215022.1| ribosome recycling factor [Clostridium difficile CD196] gi|260687397|ref|YP_003218531.1| ribosome recycling factor [Clostridium difficile R20291] gi|306520574|ref|ZP_07406921.1| ribosome recycling factor [Clostridium difficile QCD-32g58] gi|122973796|sp|Q185S5|RRF_CLOD6 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|115251191|emb|CAJ69022.1| Ribosome-recycling factor [Clostridium difficile] gi|260209900|emb|CBA63839.1| ribosome recycling factor [Clostridium difficile CD196] gi|260213414|emb|CBE05060.1| ribosome recycling factor [Clostridium difficile R20291] Length = 185 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 74/178 (41%), Positives = 118/178 (66%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++++M TI LK + T+R GR + MLD ++V+ YG+ P+NQ+ ++V EPR+L+ Sbjct: 7 KQLEEKMNGTIDALKFEFGTIRAGRANAQMLDKIRVDYYGTPTPINQIGAISVPEPRILM 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S WDK + +E+ I S+LGLNP +G+V+R+ VP TEERR L K A AE+ K+ Sbjct: 67 ISPWDKSAMHEIEKAIANSDLGLNPSNDGEVIRLSVPALTEERRKELAKKASKAAEEFKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +RN RRD + +KK K G+ +ED + ++++QK+TD IK ID+ +K+K+IM Sbjct: 127 RIRNERRDANEKIKKMEKGGELTEDELKKAQDEVQKMTDKFIKEIDTLLSKKEKDIME 184 >gi|71278867|ref|YP_268298.1| ribosome recycling factor [Colwellia psychrerythraea 34H] gi|123633168|sp|Q485G7|RRF_COLP3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|71144607|gb|AAZ25080.1| ribosome recycling factor [Colwellia psychrerythraea 34H] Length = 185 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 81/180 (45%), Positives = 114/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +++ +DRMG +I LK + +RTGR S+LD + VE YG PLNQV NV+V + R L Sbjct: 6 IEDAQDRMGKSIEALKTSLTKIRTGRAHASLLDNIVVEYYGMDTPLNQVGNVSVPDARNL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++V+DK M+++VE+ I +S+LGLNP G ++RIP+P TEERR LVKV AE K Sbjct: 66 SITVFDKSMISAVEKAIMKSDLGLNPQSNGTLIRIPLPPLTEERRKDLVKVVRGEAEGGK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD K K + SED E+ IQKITD +K +D +K+ E+M Sbjct: 126 VAIRNIRRDANSDFKSLLKEKEISEDDHHQAEDSIQKITDVFVKQVDEVLVKKEAELMEI 185 >gi|261253725|ref|ZP_05946298.1| ribosome recycling factor [Vibrio orientalis CIP 102891] gi|260937116|gb|EEX93105.1| ribosome recycling factor [Vibrio orientalis CIP 102891] Length = 185 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 76/179 (42%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ ++RM ++ LK ++ +RTGR PS+L + VE YG+ PLNQVANV + R L Sbjct: 7 QDAQERMEKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAPTPLNQVANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DKE+ VE+ I S+LGLNP+ G ++R+P+P TEERR LVK+ AE ++ Sbjct: 67 ITVFDKELTQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD LK K + SED +++IQK+TD+ +K +D K+KE+M Sbjct: 127 AIRNIRRDANGELKALLKDKEISEDEDRKGQDEIQKLTDAAVKQVDEVLAAKEKELMEV 185 >gi|169824406|ref|YP_001692017.1| ribosome recycling factor [Finegoldia magna ATCC 29328] gi|302380616|ref|ZP_07269081.1| ribosome recycling factor [Finegoldia magna ACS-171-V-Col3] gi|303233629|ref|ZP_07320283.1| ribosome recycling factor [Finegoldia magna BVS033A4] gi|238687737|sp|B0S187|RRF_FINM2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|167831211|dbj|BAG08127.1| ribosome recycling factor [Finegoldia magna ATCC 29328] gi|302311559|gb|EFK93575.1| ribosome recycling factor [Finegoldia magna ACS-171-V-Col3] gi|302495063|gb|EFL54815.1| ribosome recycling factor [Finegoldia magna BVS033A4] Length = 185 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 74/180 (41%), Positives = 117/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++++ + T+ LK+++ T+R GR +PS+LD + VE YG+ PL QVA ++ E R+L Sbjct: 6 LKDMETKADKTLHALKEELKTVRAGRANPSILDNIMVEYYGTSTPLKQVATISAPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK ++ +E+ I SNLG+ P +G ++R+P P+ TE+RR L KV Y EKSK Sbjct: 66 TIQPWDKSIMKEIEKQIQASNLGITPSNDGTIIRLPFPQLTEDRRKELTKVVKEYGEKSK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++R+IRRD +D KK K+ + SED + L +DIQ +TD K ID+ +K+ E+M Sbjct: 126 VTIRSIRRDFVDDAKKMEKNAEISEDELHVLLDDIQSLTDKLTKEIDNIVTDKETELMEI 185 >gi|163941562|ref|YP_001646446.1| ribosome recycling factor [Bacillus weihenstephanensis KBAB4] gi|229013007|ref|ZP_04170172.1| Ribosome-recycling factor [Bacillus mycoides DSM 2048] gi|229061427|ref|ZP_04198772.1| Ribosome-recycling factor [Bacillus cereus AH603] gi|229134631|ref|ZP_04263441.1| Ribosome-recycling factor [Bacillus cereus BDRD-ST196] gi|229168563|ref|ZP_04296286.1| Ribosome-recycling factor [Bacillus cereus AH621] gi|229174490|ref|ZP_04302022.1| Ribosome-recycling factor [Bacillus cereus MM3] gi|229564221|sp|A9VT62|RRF_BACWK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|163863759|gb|ABY44818.1| ribosome recycling factor [Bacillus weihenstephanensis KBAB4] gi|228609050|gb|EEK66340.1| Ribosome-recycling factor [Bacillus cereus MM3] gi|228614969|gb|EEK72071.1| Ribosome-recycling factor [Bacillus cereus AH621] gi|228648892|gb|EEL04917.1| Ribosome-recycling factor [Bacillus cereus BDRD-ST196] gi|228717850|gb|EEL69498.1| Ribosome-recycling factor [Bacillus cereus AH603] gi|228748261|gb|EEL98121.1| Ribosome-recycling factor [Bacillus mycoides DSM 2048] Length = 185 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 78/179 (43%), Positives = 117/179 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ ++M ++ +++ T+R GR S S+LD V+V+ YG+ P+ Q+AN+TV E R+L Sbjct: 6 LKSSNEKMEKAVAAYSRELATVRAGRASSSVLDKVQVDYYGAPTPVVQLANITVPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +DK + +E+ I +++LGLNP +G V+RI P TEERR LVKV YAE++K Sbjct: 66 VIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRN+RRD D LKK K+G +ED + DIQK TD I +D + K+KEIM Sbjct: 126 VAVRNVRRDSNDDLKKLEKAGDITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIME 184 >gi|163801782|ref|ZP_02195679.1| ribosome releasing factor [Vibrio sp. AND4] gi|159174290|gb|EDP59094.1| ribosome releasing factor [Vibrio sp. AND4] Length = 185 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 77/179 (43%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK ++ +RTGR PS+L + VE YG+ PLNQVANV + R L Sbjct: 7 KDAQERMDKSVEALKNNLAKVRTGRAHPSLLSGISVEYYGASTPLNQVANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DKE+ VE+ I S+LGLNP+ G ++R+P+P TEERR LVK+ AE +++ Sbjct: 67 ITVFDKELTQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD LK K + SED +++IQK+TD +K ID K+KE+M Sbjct: 127 AVRNIRRDANSDLKGLLKDKEISEDEDRKAQDEIQKLTDVAVKKIDEVLAAKEKELMEV 185 >gi|170723240|ref|YP_001750928.1| ribosome recycling factor [Pseudomonas putida W619] gi|229564262|sp|B1JBQ7|RRF_PSEPW RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|169761243|gb|ACA74559.1| ribosome recycling factor [Pseudomonas putida W619] Length = 185 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 78/177 (44%), Positives = 117/177 (66%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ +DRMG +I L +++ ++RTGR PS+LD VKV A+GS +PLNQVA V+V + R L Sbjct: 7 KDAQDRMGKSIEALGRNLASIRTGRAHPSILDSVKVPAWGSEMPLNQVAAVSVEDARTLK 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + DK + A++E+ I S+LGLNP G +R+P+P TEE R K A A AE +K+ Sbjct: 67 IVAHDKNLSAAIEKAILTSDLGLNPSSAGTTIRVPMPALTEETRKGYTKQASAVAEDAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +VRN+RRD + LKK K + SED ++IQK+TD + ID+ F+ K+K+++ Sbjct: 127 AVRNVRRDALADLKKLTKDKEISEDEERRAADEIQKLTDKFVAEIDAAFKAKEKDLL 183 >gi|313115645|ref|ZP_07801101.1| ribosome recycling factor [Faecalibacterium cf. prausnitzii KLE1255] gi|310622031|gb|EFQ05530.1| ribosome recycling factor [Faecalibacterium cf. prausnitzii KLE1255] Length = 184 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 72/174 (41%), Positives = 115/174 (66%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 +D+M ++ L +++ +R GR +P++LD V V+ YG+ P+ QVA+V V E R L ++ Sbjct: 9 EDKMKSSVEHLGRELGAVRAGRANPAVLDKVSVDYYGAPTPIQQVASVAVAEARTLTITP 68 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 WD+ ++ + + I S++G+ PI +G +R+ P TEERR L K E++K++VR Sbjct: 69 WDRTLLRPISKAIMASDVGITPIDDGSTIRLNFPAPTEERRKQLAKEVSKLGEEAKVAVR 128 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 NIRR+ MD K +K+G+ +ED ++E D+QK+TD IKNID+ EEK+KEIM Sbjct: 129 NIRREAMDKAKAMKKAGELTEDSQKTMEEDVQKLTDKYIKNIDAAVEEKQKEIM 182 >gi|156975503|ref|YP_001446410.1| ribosome recycling factor [Vibrio harveyi ATCC BAA-1116] gi|166231528|sp|A7MXZ7|RRF_VIBHB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|156527097|gb|ABU72183.1| hypothetical protein VIBHAR_03234 [Vibrio harveyi ATCC BAA-1116] Length = 185 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 78/179 (43%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK ++ +RTGR PS+L + VE YG+ PLNQVANV + R L Sbjct: 7 KDAQERMDKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAPTPLNQVANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DKE+ VE+ I S+LGLNP+ G ++R+P+P TEERR LVK+ AE S++ Sbjct: 67 ITVFDKELTQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGSRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD LK K + SED +++IQK+TD +K ID K+KE+M Sbjct: 127 AVRNIRRDANSDLKGLLKDKEISEDEDRKAQDEIQKLTDVAVKKIDEVLAAKEKELMEV 185 >gi|121594920|ref|YP_986816.1| ribosome recycling factor [Acidovorax sp. JS42] gi|222110429|ref|YP_002552693.1| ribosome recycling factor [Acidovorax ebreus TPSY] gi|166230405|sp|A1W915|RRF_ACISJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|254809509|sp|B9MGM0|RRF_DIAST RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|120607000|gb|ABM42740.1| ribosome recycling factor [Acidovorax sp. JS42] gi|221729873|gb|ACM32693.1| ribosome recycling factor [Acidovorax ebreus TPSY] Length = 186 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 76/174 (43%), Positives = 112/174 (64%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M +I+ K ++ +RTGR +P +LD + VE YGS VPL+QVANV +L+ R + V W+ Sbjct: 13 KMDQSIAAFKNNLAKIRTGRANPQLLDTIHVEYYGSMVPLSQVANVALLDARTISVQPWE 72 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K M A +E+ I ES+LGLNP G ++R+P+P +EERR + K+A + E +K+++RN+ Sbjct: 73 KNMGAKIEKAIRESDLGLNPASMGDLIRVPMPPMSEERRKEMTKLARSEGEGAKVAIRNL 132 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD + +KK K ASED E D+QK TD I ID+ K++EIM Sbjct: 133 RRDANEGVKKLVKDKLASEDDQKRAEADVQKTTDKHIAEIDALVAAKEQEIMAI 186 >gi|59712566|ref|YP_205342.1| ribosome recycling factor [Vibrio fischeri ES114] gi|71649417|sp|Q5E3E2|RRF_VIBF1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|59480667|gb|AAW86454.1| ribosome recycling factor [Vibrio fischeri ES114] Length = 185 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 76/179 (42%), Positives = 116/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK +++ +RTGR PS+L + VE YG+ PLNQVANV + R L Sbjct: 7 KDAQERMEKSVEALKNNLLKIRTGRAHPSLLSGISVEYYGAQTPLNQVANVVAEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DKE+ VE+ I S+LGLNP+ G V+R+P+P TEERR LVK+ AE ++ Sbjct: 67 ITVFDKELAGLVEKAIMMSDLGLNPMSAGTVIRVPLPPLTEERRKDLVKIVRGEAENGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD +K K + SED +++IQK+TD+ +K+ID K+KE+M Sbjct: 127 AIRNIRRDANGDVKALLKEKEISEDDDRRAQDEIQKLTDAAVKSIDEVLAVKEKELMEV 185 >gi|227514718|ref|ZP_03944767.1| ribosome recycling factor [Lactobacillus fermentum ATCC 14931] gi|227086922|gb|EEI22234.1| ribosome recycling factor [Lactobacillus fermentum ATCC 14931] Length = 186 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 76/179 (42%), Positives = 118/179 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K++M + LK+ + +R GR + S+L+ V VE YG+ PLNQ+A++T+ E R L Sbjct: 7 LAEAKEKMAKSGDALKRTLADIRAGRANASLLNTVTVEYYGAPTPLNQLASITIPEARQL 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +DK + +ER I+ESNLGL P +G+ +R+ VP+ TE+RR LVK A EK+K Sbjct: 67 LISPYDKTTLKDIERAIYESNLGLTPQNDGETIRLVVPQLTEDRRKELVKDVKAEMEKAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRN+RR+ MD LKK K G ++D LE +Q+ TD+ IKN++ +K+KE++ Sbjct: 127 VAVRNVRREAMDDLKKGNKDGDFNDDEFHDLEKKVQEETDAGIKNLEQIAADKEKELLE 185 >gi|317493185|ref|ZP_07951608.1| ribosome recycling protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918845|gb|EFV40181.1| ribosome recycling protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 185 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 77/173 (44%), Positives = 113/173 (65%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM + K ++ +RTGR P++LD + VE YGS PL QVANV + R L ++V+D Sbjct: 12 RMDKCVEAFKSNISKIRTGRAHPNLLDGISVEYYGSATPLRQVANVVAEDSRTLAITVFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + + A+VE+ I S+LGLNP+ G V+R+P+P TEERR L+K+ A AE+ ++SVRN+ Sbjct: 72 RSLSAAVEKAIMASDLGLNPMSAGAVIRVPLPALTEERRKDLIKLVRAEAEQGRVSVRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 RRD D +K K + SED ++++QK+TD IK IDS +K+KE+M Sbjct: 132 RRDANDKVKVLLKDKEISEDEDRKSQDEVQKMTDVMIKKIDSALADKEKELME 184 >gi|239826646|ref|YP_002949270.1| ribosome recycling factor [Geobacillus sp. WCH70] gi|259494544|sp|C5D9B8|RRF_GEOSW RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|239806939|gb|ACS24004.1| ribosome recycling factor [Geobacillus sp. WCH70] Length = 185 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 74/175 (42%), Positives = 117/175 (66%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K++M + +++ T+R GR +PS+L+ V V+ YG P+ Q+A+++V E R+LV+ Sbjct: 10 KEKMDKAVQAFTRELATIRAGRANPSLLEKVTVDYYGMPTPIIQLASISVPEARLLVIQP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +DK ++ +E+ I S+LGL P +G V+RI +P TEERR LVK+ Y+E +K++VR Sbjct: 70 YDKSVIKDIEKAILSSDLGLTPSNDGSVIRITIPPLTEERRRELVKLVKKYSEDAKVAVR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 NIRRD D LKK K+G+ +ED + +D+QK+TD I ID+ +EK+KE+M Sbjct: 130 NIRRDANDELKKLEKNGEITEDELRGYTDDVQKLTDDHIAKIDAITKEKEKEVME 184 >gi|116495065|ref|YP_806799.1| ribosome recycling factor [Lactobacillus casei ATCC 334] gi|191638568|ref|YP_001987734.1| ribosome recycling factor [Lactobacillus casei BL23] gi|227534923|ref|ZP_03964972.1| ribosome recycling factor [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|122263518|sp|Q038L5|RRF_LACC3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238693049|sp|B3WES5|RRF_LACCB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|116105215|gb|ABJ70357.1| ribosome recycling factor [Lactobacillus casei ATCC 334] gi|190712870|emb|CAQ66876.1| Ribosome recycling factor (Ribosome-releasing factor) (RRF) [Lactobacillus casei BL23] gi|227187679|gb|EEI67746.1| ribosome recycling factor [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|327382607|gb|AEA54083.1| Ribosome recycling factor, RRF [Lactobacillus casei LC2W] gi|327385804|gb|AEA57278.1| Ribosome recycling factor, RRF [Lactobacillus casei BD-II] Length = 185 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 77/185 (41%), Positives = 118/185 (63%), Gaps = 2/185 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 NQ+ID + MG T L++++ +R GR + S+L+ + VE YG+ PLNQ+A +T+ Sbjct: 3 NQIIDQAKVN--MGKTEESLQRELGNIRAGRANASLLNQITVEYYGAPTPLNQMAAITIP 60 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 EPR+L VS +DK + ++E ++ S+LG+NP +G V+R+ +P+ T ERR + K Y Sbjct: 61 EPRVLQVSPYDKSSLKNIETALNASDLGINPANDGDVIRLVIPQLTGERRKEIAKEVGKY 120 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 +E +KI++RNIRR+G+D LK+ K G +ED + LE D+QK TD K ID K+K Sbjct: 121 SESAKIAIRNIRREGLDKLKRQEKDGDITEDDLHRLEKDMQKATDDATKRIDEIAAAKEK 180 Query: 182 EIMHF 186 EI Sbjct: 181 EITEV 185 >gi|242373550|ref|ZP_04819124.1| peptide chain release factor RF4 [Staphylococcus epidermidis M23864:W1] gi|242348913|gb|EES40515.1| peptide chain release factor RF4 [Staphylococcus epidermidis M23864:W1] Length = 184 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 77/180 (42%), Positives = 120/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +++ K RM +I L +++ + GR + ++L+ V V+ YG+ P+ Q+A+++V E R+L Sbjct: 5 IKDTKARMQKSIDNLSRELANISAGRANSNLLNGVTVDYYGAPTPVQQLASISVPEARLL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+S +DK V +E+ I +NLG+NP +G+V+RI VP TEERR LVK E +K Sbjct: 65 VISPYDKTSVDDIEKAIIAANLGVNPTSDGEVIRISVPALTEERRKELVKDVKKIGEDAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+RNIRRD DHLKK K+G +ED + S +D+QK TD++IK ID ++K+K+IM Sbjct: 125 VSIRNIRRDINDHLKKQEKNGDITEDDLRSQTDDVQKATDNSIKEIDQLVDDKEKDIMSV 184 >gi|238763976|ref|ZP_04624932.1| Ribosome-recycling factor [Yersinia kristensenii ATCC 33638] gi|238697793|gb|EEP90554.1| Ribosome-recycling factor [Yersinia kristensenii ATCC 33638] Length = 185 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 76/174 (43%), Positives = 113/174 (64%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM + + + +RTGR SPS+LD ++VE YG+ PL Q+AN+ V + R L ++V+D Sbjct: 12 RMEKCLEAFQNHISKIRTGRASPSILDGIQVEYYGTATPLRQLANIVVEDSRTLALTVFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + + A+VE+ I S+LGLNP G V+R+P+P TEERR L+KV A AE+ ++S+RN+ Sbjct: 72 RSLSAAVEKAIMTSDLGLNPSSAGTVIRVPLPALTEERRKDLIKVVRAEAEQGRVSIRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD D +K K + SED + DIQK+TD+ IK +D+ K+ E+M F Sbjct: 132 RRDANDKVKALLKDKEISEDEDRRSQEDIQKLTDAFIKKVDAALAAKETELMDF 185 >gi|317153887|ref|YP_004121935.1| ribosome recycling factor [Desulfovibrio aespoeensis Aspo-2] gi|316944138|gb|ADU63189.1| ribosome recycling factor [Desulfovibrio aespoeensis Aspo-2] Length = 184 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 76/180 (42%), Positives = 115/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + K RM IS L+KD LRTGR + +++D + V+ YG+ P+NQ+++V+V + + + Sbjct: 5 LNDGKKRMAGAISALEKDFSKLRTGRATTALVDTIVVDYYGTPTPINQLSSVSVPDAKSI 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WD+ +VE+ I S+LGLNP+ +G+++RI +P TEERR LVKVA Y E+ K Sbjct: 65 TIQPWDRGAFGAVEKAIQTSDLGLNPVNDGKIIRISIPPLTEERRKELVKVAKKYTEECK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RN+RRD D LKK K SED + E D+QK+TD +K + K+KEI+ Sbjct: 125 IAIRNVRRDLNDSLKKLEKDKAISEDELKKGEADVQKLTDDFVKQSEGVLVAKEKEILEI 184 >gi|237745598|ref|ZP_04576078.1| ribosome recycling factor [Oxalobacter formigenes HOxBLS] gi|229376949|gb|EEO27040.1| ribosome recycling factor [Oxalobacter formigenes HOxBLS] Length = 186 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 76/177 (42%), Positives = 115/177 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N + +M ++ LK D+ +RTGR +LD ++V+ YGS ++QVANVT+L+ R + Sbjct: 8 KNAEQKMNKSVDSLKADLAKVRTGRAHTGILDHIQVDYYGSPTQISQVANVTLLDARTIS 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K+MV+ +E+ I +S+LGLNP G ++R+P P TEERR +VK+ E +K+ Sbjct: 68 VQPWEKKMVSVIEKAIRDSDLGLNPSSVGDIIRVPTPPLTEERRKEMVKLVKTEGEDAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +VRNIRRD + LKK K SED ++DIQK+TD ++ ID EK+KE+M Sbjct: 128 AVRNIRRDANEALKKMVKDKACSEDEERRAQDDIQKLTDRFVQQIDKLLTEKEKEVM 184 >gi|285018794|ref|YP_003376505.1| ribosome recycling factor (rrf) protein [Xanthomonas albilineans GPE PC73] gi|283474012|emb|CBA16513.1| probable ribosome recycling factor (rrf) protein [Xanthomonas albilineans] Length = 185 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 75/177 (42%), Positives = 116/177 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ + RM +I L+ ++ +RTGR S ++++ +KV YGS +PL+QVA+V V + R L Sbjct: 7 QDAQTRMAKSIDALRHTLIKVRTGRASTALVEHLKVNYYGSEMPLSQVASVAVADARSLT 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++ W+K+MV++VE+ I S+LGL P G +R+ +P TEERR L KV H E +K+ Sbjct: 67 ITPWEKQMVSAVEKAILASDLGLTPNTAGTTIRLNLPALTEERRRELSKVVHGEGEDTKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++RNIRRD H+K K K +ED E+DIQK+TD IK++D + K++E+M Sbjct: 127 AIRNIRRDANQHIKDLLKDKKVTEDEARGSEDDIQKLTDKAIKDVDEVVKSKEQELM 183 >gi|323495359|ref|ZP_08100437.1| ribosome recycling factor [Vibrio brasiliensis LMG 20546] gi|323310430|gb|EGA63616.1| ribosome recycling factor [Vibrio brasiliensis LMG 20546] Length = 185 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 76/179 (42%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ ++RM ++ LK ++ +RTGR PS+L + VE YG+ PLNQVANV + R L Sbjct: 7 QDAQERMEKSVEALKNNLSKVRTGRAHPSLLAGISVEYYGAPTPLNQVANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DKE+ VE+ I S+LGLNP+ G ++R+P+P TEERR LVK+ AE ++ Sbjct: 67 ITVFDKELTQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD LK K + SED +++IQK+TD+ +K +D K+KE+M Sbjct: 127 AIRNIRRDANGELKALLKDKEISEDEDRKGQDEIQKLTDAAVKQVDEVLAAKEKELMEV 185 >gi|310641584|ref|YP_003946342.1| ribosome-recycling factor [Paenibacillus polymyxa SC2] gi|309246534|gb|ADO56101.1| Ribosome-recycling factor [Paenibacillus polymyxa SC2] Length = 184 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 77/178 (43%), Positives = 113/178 (63%), Gaps = 1/178 (0%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM I L++D+ +LR GR +P++LD V+VE YG+ P+NQ+AN+ + R L+ Sbjct: 7 KSAEERMQKAIQALQRDLSSLRAGRATPALLDRVQVEYYGAMTPVNQLANINTPDSRTLM 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + WDK +A +ER I +S+LGL P +G +R+ +P TEERR LVK+ E++KI Sbjct: 67 IQPWDKSSLADIERAIQKSDLGLTPSNDGNTIRLSIPALTEERRTDLVKLTKKSGEEAKI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++RNIRRD D +KK KS SED + DIQK TD I +D K+KEIM Sbjct: 127 AIRNIRRDANDDIKKMEKSD-ISEDESRKHQEDIQKTTDKFIAEVDKVLAAKEKEIME 183 >gi|257464022|ref|ZP_05628407.1| ribosome recycling factor (RRF) [Fusobacterium sp. D12] gi|317061543|ref|ZP_07926028.1| ribosome recycling factor [Fusobacterium sp. D12] gi|313687219|gb|EFS24054.1| ribosome recycling factor [Fusobacterium sp. D12] Length = 189 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 79/180 (43%), Positives = 117/180 (65%), Gaps = 4/180 (2%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q + +M T+ K+ ++R GR S +MLD +KVE YGS +PLNQVA V+ E R+L Sbjct: 8 IQECESKMKKTVEATKEKFTSIRAGRASVAMLDTIKVEQYGSEMPLNQVATVSAPEARLL 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK M+ +E+ I +NLG+NP +G+V+R+ +PE T ERR VK+A AE K Sbjct: 68 VIDPWDKTMIPKIEKAILAANLGMNPNNDGRVVRLVMPELTAERRKEYVKLAKKEAENGK 127 Query: 127 ISVRNIRRD---GMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 I+VRNIR+D + ++K ++SG SED + E ++Q +TD TIK +D +K+KEI Sbjct: 128 IAVRNIRKDMNTALKKIEKDKESG-MSEDELKRFEAEVQTLTDKTIKELDELLAKKEKEI 186 >gi|312883811|ref|ZP_07743530.1| ribosome recycling factor [Vibrio caribbenthicus ATCC BAA-2122] gi|309368560|gb|EFP96093.1| ribosome recycling factor [Vibrio caribbenthicus ATCC BAA-2122] Length = 185 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 76/179 (42%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ ++RM ++ LK ++ +RTGR PS+L + VE YG+ PLNQVANV + R L Sbjct: 7 QDAQERMEKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAPTPLNQVANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DKE+ VE+ I S+LGLNP+ G ++R+P+P TEERR LVK+ AE ++ Sbjct: 67 ITVFDKELTQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD LK K + SED +++IQK+TD+ +K +D K+KE+M Sbjct: 127 AIRNIRRDANGDLKALLKEKEISEDEDRKGQDEIQKLTDAAVKQVDEVLAAKEKELMEV 185 >gi|209695848|ref|YP_002263778.1| ribosome recycling factor [Aliivibrio salmonicida LFI1238] gi|226749946|sp|B6EK54|RRF_ALISL RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|208009801|emb|CAQ80108.1| ribosome recycling factor [Aliivibrio salmonicida LFI1238] Length = 185 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 76/179 (42%), Positives = 116/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK +++ +RTGR PS+L + VE YG+ P+NQVAN+ + R L Sbjct: 7 KDAQERMEKSVEALKNNLLKIRTGRAHPSLLSGLSVEYYGARTPINQVANIIAEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DKE+ VE+ I S+LGLNP+ G V+R+P+P TEERR +LVK+ AE ++ Sbjct: 67 ITVFDKELAGLVEKAIMMSDLGLNPMSAGTVIRVPLPPLTEERRKSLVKIVRGEAENGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD +K K + SED +++IQK+TD +KNID K+KE+M Sbjct: 127 AVRNIRRDANGDIKALLKDKEISEDDDRRTQDEIQKLTDIAVKNIDDVLAVKEKELMEV 185 >gi|319786511|ref|YP_004145986.1| ribosome recycling factor [Pseudoxanthomonas suwonensis 11-1] gi|317465023|gb|ADV26755.1| ribosome recycling factor [Pseudoxanthomonas suwonensis 11-1] Length = 185 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 76/177 (42%), Positives = 115/177 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ + RM +I L+ +++ +RTGR S ++D ++V AYGS VPL+QVA V+V + R LV Sbjct: 7 QDAQARMAKSIEALRHNLVKVRTGRASTGLVDTIRVSAYGSDVPLSQVAAVSVSDARSLV 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++ WDK MV +E+ I S+LGL P G +R+ +P TEERR L KV + E +K+ Sbjct: 67 ITPWDKSMVGPIEKAILASDLGLTPNTAGTTIRLNLPALTEERRRDLAKVVASEGEDAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++RN+RRD +K K + +ED V E+DIQKITD IK++D + K++E+M Sbjct: 127 AIRNVRRDANQQVKDLLKEKQVTEDDVRRAEDDIQKITDKAIKDVDEVVKAKEQELM 183 >gi|295399842|ref|ZP_06809823.1| ribosome recycling factor [Geobacillus thermoglucosidasius C56-YS93] gi|312111646|ref|YP_003989962.1| ribosome recycling factor [Geobacillus sp. Y4.1MC1] gi|294978245|gb|EFG53842.1| ribosome recycling factor [Geobacillus thermoglucosidasius C56-YS93] gi|311216747|gb|ADP75351.1| ribosome recycling factor [Geobacillus sp. Y4.1MC1] Length = 185 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 73/175 (41%), Positives = 118/175 (67%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K++M + +++ T+R GR +PS+L+ + V+ YG+ P+ Q+A+++ E R+LV+ Sbjct: 10 KEKMDKAVQAFTRELATIRAGRANPSLLEKITVDYYGAPTPIIQLASISAPEARLLVIQP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +DK ++ +E+ I S+LGL P +G V+RI +P TEERR LVK+ Y+E +K++VR Sbjct: 70 YDKSVIKDIEKAILSSDLGLTPSNDGSVIRIAIPPLTEERRRELVKLVKKYSEDAKVAVR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 NIRRD D LKK K+G+ +ED + +DIQK+TD+ I ID+ +EK+KE+M Sbjct: 130 NIRRDANDELKKLEKNGEITEDELRGYIDDIQKLTDNHIAKIDTITKEKEKEVME 184 >gi|242242542|ref|ZP_04796987.1| peptide chain release factor RF4 [Staphylococcus epidermidis W23144] gi|242233969|gb|EES36281.1| peptide chain release factor RF4 [Staphylococcus epidermidis W23144] gi|319401451|gb|EFV89661.1| ribosome recycling factor [Staphylococcus epidermidis FRI909] Length = 184 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 77/180 (42%), Positives = 119/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +++ K RM +I L +++ + GR + ++L+ V V+ YG+ P+ Q+A++ V E R+L Sbjct: 5 IKDTKSRMQKSIDNLSRELANISAGRANSNLLNGVTVDYYGAPTPVQQLASINVPEARLL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+S +DK VA +E+ I +NLG+NP +G+V+RI VP TEERR LVK E +K Sbjct: 65 VISPYDKTSVADIEKAIIAANLGVNPTSDGEVIRISVPALTEERRKELVKEVKKIGEDAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+RNIRRD D LKK K+G +ED + S +D+QK TD++IK+ID +K+K+IM Sbjct: 125 VSIRNIRRDINDQLKKDEKNGDITEDDLRSQTDDVQKATDNSIKDIDQLVADKEKDIMSV 184 >gi|319649531|ref|ZP_08003687.1| ribosome recycling factor [Bacillus sp. 2_A_57_CT2] gi|317398693|gb|EFV79375.1| ribosome recycling factor [Bacillus sp. 2_A_57_CT2] Length = 185 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 73/178 (41%), Positives = 120/178 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + + K+RM IS +++ ++R G+ + S+LD + V+ YG+ P+NQ+A V+ E R+L Sbjct: 6 IADAKERMTKAISAYTRELASIRAGKANASLLDRITVDYYGAPTPVNQLAGVSAPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V++ +DK ++ +E+ I +S++GLNP +G V+R+ +P+ TEERR LVKV +E +K Sbjct: 66 VITPYDKSILGEIEKAILKSDIGLNPSNDGSVIRLAIPQLTEERRKDLVKVVKKESEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++RN+RRD D LKK K+G +ED + +DIQK+TD I ID +EK+KEI+ Sbjct: 126 VAIRNVRRDANDDLKKLEKNGDITEDDLRGFSDDIQKLTDDHISKIDELTKEKEKEIL 183 >gi|319940997|ref|ZP_08015334.1| ribosome-recycling factor [Sutterella wadsworthensis 3_1_45B] gi|319805570|gb|EFW02365.1| ribosome-recycling factor [Sutterella wadsworthensis 3_1_45B] Length = 186 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 77/178 (43%), Positives = 107/178 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q + +MG T+ L+ D +RTGR S +LD ++V+ YG PLNQVA V V + L Sbjct: 7 IQQTQHKMGVTVEKLRDDFTRIRTGRASTGLLDKIRVDYYGCPTPLNQVAQVGVGDAHTL 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V W+K MV E+ I +S+LGLNP G +R+P+P TEERR L KV + E++K Sbjct: 67 TVQPWEKNMVKVCEKAIRDSDLGLNPATSGDTIRVPLPPLTEERRRELTKVVKGFGEEAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++VRN+RRD L++ K + SED E +IQK+TD + ID EK KEIM Sbjct: 127 VAVRNLRRDANTQLERLEKDKEISEDDQRRYETEIQKLTDRFVAEIDKVIAEKDKEIM 184 >gi|227904185|ref|ZP_04021990.1| ribosome recycling factor [Lactobacillus acidophilus ATCC 4796] gi|227868204|gb|EEJ75625.1| ribosome recycling factor [Lactobacillus acidophilus ATCC 4796] Length = 185 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 73/179 (40%), Positives = 118/179 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +D MG +I +K + ++R G + ++LD V+VE YG+ PL Q+++VT+ EPR+L Sbjct: 6 IKKAQDNMGKSIKVYQKKLASVRAGVANAALLDNVQVEYYGAPTPLTQMSSVTIPEPRVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +D+ + +E + SNLGL P +G+V+R+ +P+ T ERR + K YAE++K Sbjct: 66 LITPYDQNSLDDIEHALLASNLGLTPANDGKVIRLVIPQLTSERREEIAKEVGKYAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 I+VRN+RR+ MD LKK K+G +ED +LE +QK+TD K ID +EK+KEI Sbjct: 126 IAVRNVRREAMDSLKKEEKNGDITEDEQRNLEKQVQKVTDDATKKIDQLADEKRKEITQ 184 >gi|51245009|ref|YP_064893.1| ribosome recycling factor [Desulfotalea psychrophila LSv54] gi|60390247|sp|Q6AP38|RRF_DESPS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|50876046|emb|CAG35886.1| probable ribosome recycling factor [Desulfotalea psychrophila LSv54] Length = 184 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 76/173 (43%), Positives = 115/173 (66%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM ++ K D+ +RTGR S S+LD + V AYGS +PLNQVA +T+ E RM+ + WD Sbjct: 11 RMAKSVEAFKNDLSRVRTGRASISILDDITVVAYGSTMPLNQVATLTIPESRMIALQPWD 70 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 +M+ +E+ I +S LGLNP+ +G+V+R+ +P+ TE+RR LVK AE+ ++++RN+ Sbjct: 71 PQMIPPIEKAILKSGLGLNPVNDGKVVRLNIPQLTEDRRKDLVKQVKKIAEEFRVAIRNV 130 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 RRD +D LK +K + SED + L++D QK TD IK +D K+KE+M Sbjct: 131 RRDAIDTLKLQKKDKEISEDDLFKLQDDAQKETDIYIKQLDEVSASKEKEVME 183 >gi|257439607|ref|ZP_05615362.1| ribosome recycling factor [Faecalibacterium prausnitzii A2-165] gi|257197974|gb|EEU96258.1| ribosome recycling factor [Faecalibacterium prausnitzii A2-165] Length = 184 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 70/175 (40%), Positives = 116/175 (66%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 +++M ++ L +++ +R GR +P++LD V V+ YG+ P+ QVA+V V E R L ++ Sbjct: 8 FEEKMKSSVEHLDRELAAVRAGRANPAVLDKVSVDYYGAPTPIQQVASVAVSEARTLTIT 67 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 WD+ ++ ++ + I S++G+ PI +G +R+ P TEERR L K E++K++V Sbjct: 68 PWDRTLLRAISKAIMASDVGITPIDDGSTIRLNFPAPTEERRKQLAKEVAKLGEEAKVAV 127 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RN+RRD MD K +K+G+ +ED ++E ++QK+TD IKNID+ EEK+KEIM Sbjct: 128 RNVRRDAMDKAKAMKKAGELTEDTQKTMEEEVQKLTDKYIKNIDAAVEEKQKEIM 182 >gi|261407947|ref|YP_003244188.1| ribosome recycling factor [Paenibacillus sp. Y412MC10] gi|329929321|ref|ZP_08283074.1| ribosome recycling factor [Paenibacillus sp. HGF5] gi|261284410|gb|ACX66381.1| ribosome recycling factor [Paenibacillus sp. Y412MC10] gi|328936690|gb|EGG33133.1| ribosome recycling factor [Paenibacillus sp. HGF5] Length = 184 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 77/178 (43%), Positives = 114/178 (64%), Gaps = 1/178 (0%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N ++RM I LK+D+ TLR GR +P++LD + VE YG+ PLNQ+AN++ + R L+ Sbjct: 7 KNAEERMEKAILSLKRDLATLRAGRAAPALLDRITVEYYGAQTPLNQLANISTPDSRTLM 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + WDK +A +E+ I +S++GL P +G +R+ VP TEERR LVK+ + E++K+ Sbjct: 67 IQPWDKSSLADIEKAIMKSDIGLTPANDGNQIRLVVPALTEERRTELVKMTKKFGEEAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++RNIRRD D +KK K+ SED + DIQK TD I +D K+KEIM Sbjct: 127 AIRNIRRDANDDIKKLEKTD-ISEDESRRHQEDIQKATDKFIAEVDKVLVAKEKEIME 183 >gi|197335484|ref|YP_002156787.1| ribosome recycling factor [Vibrio fischeri MJ11] gi|226749945|sp|B5F9X3|RRF_VIBFM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|197316974|gb|ACH66421.1| ribosome recycling factor [Vibrio fischeri MJ11] Length = 185 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 77/179 (43%), Positives = 116/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK +++ +RTGR PS+L + VE YG+ PLNQVANV + R L Sbjct: 7 KDAQERMEKSVEALKNNLLKVRTGRAHPSLLSGISVEYYGAKTPLNQVANVVAEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DKE+ VE+ I S+LGLNP+ G V+R+P+P TEERR LVK+ AE ++ Sbjct: 67 ITVFDKELAGLVEKAIMMSDLGLNPMSAGTVIRVPLPPLTEERRKDLVKIVRGEAENGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD +K K + SED +++IQK+TD+ +K+ID K+KE+M Sbjct: 127 AVRNIRRDANGDVKALLKEKEISEDDDRRAQDEIQKLTDAAVKSIDEVLAVKEKELMEV 185 >gi|255656125|ref|ZP_05401534.1| ribosome recycling factor [Clostridium difficile QCD-23m63] gi|296450443|ref|ZP_06892199.1| ribosome recycling factor [Clostridium difficile NAP08] gi|296879434|ref|ZP_06903428.1| ribosome recycling factor [Clostridium difficile NAP07] gi|296260704|gb|EFH07543.1| ribosome recycling factor [Clostridium difficile NAP08] gi|296429580|gb|EFH15433.1| ribosome recycling factor [Clostridium difficile NAP07] Length = 185 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 74/178 (41%), Positives = 117/178 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++++M TI LK + T+R GR + MLD ++V+ YG+ P+NQ+ ++V EPR+L+ Sbjct: 7 KQLEEKMNGTIDALKFEFGTIRAGRANAQMLDKIRVDYYGTPTPINQIGAISVPEPRILM 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S WDK + +E+ I S+LGLNP +G+V+R+ VP TEERR L K A AE K+ Sbjct: 67 ISPWDKSAMHEIEKAIANSDLGLNPSNDGEVIRLSVPALTEERRKELAKKASKAAEDFKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +RN RRD + +KK K G+ +ED + ++++QK+TD IK ID+ +K+K+IM Sbjct: 127 RIRNERRDANEKIKKMEKGGELTEDELKKAQDEVQKMTDKFIKEIDTLLSKKEKDIME 184 >gi|241896312|ref|ZP_04783608.1| ribosome recycling factor [Weissella paramesenteroides ATCC 33313] gi|241870473|gb|EER74224.1| ribosome recycling factor [Weissella paramesenteroides ATCC 33313] Length = 185 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 76/178 (42%), Positives = 120/178 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +++ K+RM L++++ +R G +PS+L + VE YG+ PLNQ+A+VTV E R+L Sbjct: 6 IESAKERMSKAGDALRRELGNIRAGVANPSILRNITVEYYGAETPLNQLASVTVPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK ++ +E+ I S+LGL P +G V+R+ +P TEE R L K A +EK+K Sbjct: 66 LITPFDKSVLKGIEQSIFASDLGLTPANDGSVIRLVIPALTEETRKDLAKEVKAESEKAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++VRN+RRD MD KK+ K+ SED ++E+DIQK TD+ IKN+D EK+KE++ Sbjct: 126 VAVRNVRRDAMDDAKKALKNNDLSEDEAHNIEDDIQKATDAAIKNVDEIAAEKEKELL 183 >gi|300780937|ref|ZP_07090791.1| ribosome recycling factor [Corynebacterium genitalium ATCC 33030] gi|300532644|gb|EFK53705.1| ribosome recycling factor [Corynebacterium genitalium ATCC 33030] Length = 185 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 72/179 (40%), Positives = 116/179 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + ++RM +++ + +++T+RTGR +P+M + V E YG+ P+NQ+A ++V EPRML Sbjct: 6 LLDAEERMTNSVEHTRGELVTIRTGRANPAMFNSVMAEFYGAPTPINQMATISVPEPRML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D + +E I S+LG+NP +GQV+R+ +P+ TEERR LVK A E K Sbjct: 66 LIKPYDPSTMGEIENAIRNSDLGVNPTDDGQVIRVTIPQLTEERRRDLVKQAKGKGEDGK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 I++RN+RR GMD LKK +K G A ED V++ E ++ K T + ID +K+ E++ Sbjct: 126 IAIRNVRRSGMDALKKIQKDGDAGEDEVSAAEKELDKTTAKYVDMIDDLVNKKEAELLE 184 >gi|326693032|ref|ZP_08230037.1| ribosome recycling factor [Leuconostoc argentinum KCTC 3773] Length = 181 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 77/183 (42%), Positives = 122/183 (66%), Gaps = 3/183 (1%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 D+ + K RM L++++ ++RTGR +P +LD ++VE YG+ PLNQVA+++V E Sbjct: 2 AFDITDAKARMQGAQDALQRELGSIRTGRANPRILDRIEVEYYGAMTPLNQVASISVPEA 61 Query: 64 RMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAE 123 R+L+++ +DK ++ + R I+ S+LGLNP +G ++R+ +P+ TEE R L K A AE Sbjct: 62 RILLITPFDKSVLDEIIRAINMSDLGLNPASDGNIVRLAIPQMTEEGRKELAKQVKAEAE 121 Query: 124 KSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 K+K+SVRN+RRD MD +KK + + ED+ E+ IQK+TD IK ID+ EK+KE+ Sbjct: 122 KAKVSVRNVRRDAMDSVKKDK---ELPEDVARKAEDAIQKLTDDNIKAIDAIAAEKEKEL 178 Query: 184 MHF 186 + Sbjct: 179 LTI 181 >gi|22127009|ref|NP_670432.1| ribosome recycling factor [Yersinia pestis KIM 10] gi|45442572|ref|NP_994111.1| ribosome recycling factor [Yersinia pestis biovar Microtus str. 91001] gi|51597315|ref|YP_071506.1| ribosome recycling factor [Yersinia pseudotuberculosis IP 32953] gi|108806520|ref|YP_650436.1| ribosome recycling factor [Yersinia pestis Antiqua] gi|108813113|ref|YP_648880.1| ribosome recycling factor [Yersinia pestis Nepal516] gi|145598947|ref|YP_001163023.1| ribosome recycling factor [Yersinia pestis Pestoides F] gi|149366952|ref|ZP_01888985.1| ribosome recycling factor [Yersinia pestis CA88-4125] gi|153949227|ref|YP_001400000.1| ribosome recycling factor [Yersinia pseudotuberculosis IP 31758] gi|162420181|ref|YP_001607769.1| ribosome recycling factor [Yersinia pestis Angola] gi|165927071|ref|ZP_02222903.1| ribosome recycling factor [Yersinia pestis biovar Orientalis str. F1991016] gi|165939820|ref|ZP_02228360.1| ribosome recycling factor [Yersinia pestis biovar Orientalis str. IP275] gi|166011931|ref|ZP_02232829.1| ribosome recycling factor [Yersinia pestis biovar Antiqua str. E1979001] gi|166211643|ref|ZP_02237678.1| ribosome recycling factor [Yersinia pestis biovar Antiqua str. B42003004] gi|167399872|ref|ZP_02305390.1| ribosome recycling factor [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419665|ref|ZP_02311418.1| ribosome recycling factor [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425236|ref|ZP_02316989.1| ribosome recycling factor [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470429|ref|ZP_02335133.1| ribosome recycling factor [Yersinia pestis FV-1] gi|170023318|ref|YP_001719823.1| ribosome recycling factor [Yersinia pseudotuberculosis YPIII] gi|186896420|ref|YP_001873532.1| ribosome recycling factor [Yersinia pseudotuberculosis PB1/+] gi|218928215|ref|YP_002346090.1| ribosome recycling factor [Yersinia pestis CO92] gi|229837754|ref|ZP_04457914.1| ribosome recycling factor [Yersinia pestis Pestoides A] gi|229840976|ref|ZP_04461135.1| ribosome recycling factor [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843077|ref|ZP_04463227.1| ribosome recycling factor [Yersinia pestis biovar Orientalis str. India 195] gi|229903556|ref|ZP_04518669.1| ribosome recycling factor [Yersinia pestis Nepal516] gi|270487337|ref|ZP_06204411.1| ribosome recycling factor [Yersinia pestis KIM D27] gi|294503064|ref|YP_003567126.1| ribosome releasing factor [Yersinia pestis Z176003] gi|22001943|sp|Q8ZH63|RRF_YERPE RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|60390683|sp|Q667J2|RRF_YERPS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|123073218|sp|Q1CFF0|RRF_YERPN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|123372696|sp|Q1CAN1|RRF_YERPA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166231530|sp|A4TL88|RRF_YERPP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166991561|sp|A7FFH2|RRF_YERP3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238687287|sp|A9R393|RRF_YERPG RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238688487|sp|B1JQG3|RRF_YERPY RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238691338|sp|B2JZ31|RRF_YERPB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|21960056|gb|AAM86683.1|AE013914_3 ribosome releasing factor [Yersinia pestis KIM 10] gi|45437437|gb|AAS62988.1| ribosome recycling factor [Yersinia pestis biovar Microtus str. 91001] gi|51590597|emb|CAH22238.1| ribosome recycling factor [Yersinia pseudotuberculosis IP 32953] gi|108776761|gb|ABG19280.1| ribosome recycling factor [Yersinia pestis Nepal516] gi|108778433|gb|ABG12491.1| ribosome recycling factor [Yersinia pestis Antiqua] gi|115346826|emb|CAL19712.1| ribosome recycling factor [Yersinia pestis CO92] gi|145210643|gb|ABP40050.1| ribosome recycling factor [Yersinia pestis Pestoides F] gi|149290566|gb|EDM40642.1| ribosome recycling factor [Yersinia pestis CA88-4125] gi|152960722|gb|ABS48183.1| ribosome recycling factor [Yersinia pseudotuberculosis IP 31758] gi|162352996|gb|ABX86944.1| ribosome recycling factor [Yersinia pestis Angola] gi|165912223|gb|EDR30860.1| ribosome recycling factor [Yersinia pestis biovar Orientalis str. IP275] gi|165920967|gb|EDR38191.1| ribosome recycling factor [Yersinia pestis biovar Orientalis str. F1991016] gi|165989197|gb|EDR41498.1| ribosome recycling factor [Yersinia pestis biovar Antiqua str. E1979001] gi|166207414|gb|EDR51894.1| ribosome recycling factor [Yersinia pestis biovar Antiqua str. B42003004] gi|166962406|gb|EDR58427.1| ribosome recycling factor [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050580|gb|EDR61988.1| ribosome recycling factor [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055636|gb|EDR65420.1| ribosome recycling factor [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749852|gb|ACA67370.1| ribosome recycling factor [Yersinia pseudotuberculosis YPIII] gi|186699446|gb|ACC90075.1| ribosome recycling factor [Yersinia pseudotuberculosis PB1/+] gi|229679326|gb|EEO75429.1| ribosome recycling factor [Yersinia pestis Nepal516] gi|229689953|gb|EEO82012.1| ribosome recycling factor [Yersinia pestis biovar Orientalis str. India 195] gi|229697342|gb|EEO87389.1| ribosome recycling factor [Yersinia pestis biovar Orientalis str. PEXU2] gi|229704131|gb|EEO91143.1| ribosome recycling factor [Yersinia pestis Pestoides A] gi|262361101|gb|ACY57822.1| ribosome releasing factor [Yersinia pestis D106004] gi|262365342|gb|ACY61899.1| ribosome releasing factor [Yersinia pestis D182038] gi|270335841|gb|EFA46618.1| ribosome recycling factor [Yersinia pestis KIM D27] gi|294353523|gb|ADE63864.1| ribosome releasing factor [Yersinia pestis Z176003] gi|320014181|gb|ADV97752.1| ribosome recycling factor [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 185 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 75/174 (43%), Positives = 114/174 (65%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM + + + +RTGR SPS+LD ++VE YG+ PL Q+AN+ V + R L ++V+D Sbjct: 12 RMEKCLEAFQNHISKIRTGRASPSILDGIQVEYYGTATPLRQLANIVVEDSRTLALTVFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + + A+VE+ I S+LGLNP G V+R+P+P TEERR L+KV A AE+ ++S+RN+ Sbjct: 72 RSLSAAVEKAIMTSDLGLNPSSAGTVIRVPLPALTEERRKDLIKVVRAEAEQGRVSIRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD D +K K + SED ++D+QK+TD+ IK +D+ K+ E+M F Sbjct: 132 RRDANDKVKALLKDKEISEDEDRRSQDDVQKLTDAYIKKVDAALAVKEAELMDF 185 >gi|315633607|ref|ZP_07888897.1| ribosome recycling factor [Aggregatibacter segnis ATCC 33393] gi|315477649|gb|EFU68391.1| ribosome recycling factor [Aggregatibacter segnis ATCC 33393] Length = 185 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 74/179 (41%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ +DRM ++ LK + +RTGR PS+LD ++V+ YGS PL Q+ANV + R L Sbjct: 7 KDAQDRMEKSLEALKGHIAKIRTGRAQPSLLDAIQVDYYGSATPLRQLANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+V+D+ ++ +VE+ I S+LGLNP G +R+P+P TEERR L+K+ + E+ K+ Sbjct: 67 VTVFDRSLIQAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIVKSEGEQGKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD D +K K + SE+ E +IQ+ITD IK +D EK+KE++ F Sbjct: 127 AIRNVRRDANDKIKALLKDKEISENDQHKAETEIQQITDKFIKKVDEVLAEKEKELLDF 185 >gi|83816107|ref|YP_444188.1| ribosome recycling factor [Salinibacter ruber DSM 13855] gi|294505846|ref|YP_003569904.1| Ribosome recycling factor [Salinibacter ruber M8] gi|123529892|sp|Q2S6J3|RRF_SALRD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|83757501|gb|ABC45614.1| ribosome recycling factor [Salinibacter ruber DSM 13855] gi|294342174|emb|CBH22952.1| Ribosome recycling factor [Salinibacter ruber M8] Length = 189 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 71/178 (39%), Positives = 121/178 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + M +++S+++ ++ T+R GR SP+ML+ V VE YGS PL QVA+V+ +P ++ Sbjct: 10 LDEADEEMEESVSYMRSELRTIRAGRASPAMLENVTVEYYGSQTPLEQVASVSAPQPDLI 69 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV +D+ + ++ERGI +++LGLNP +G+ +RIP+P +EERR LV+ + AE++K Sbjct: 70 VVQPFDRNAIENIERGIMKADLGLNPNNDGEKIRIPIPPLSEERRKELVETSRERAEETK 129 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 IS+RNIRRD + ++ ++ SED++ E D+Q ITD+ + ++ E+K ++IM Sbjct: 130 ISIRNIRRDAKNEIQNVVEAENFSEDVLYGAEEDLQDITDAHTETVEGLLEQKTEQIM 187 >gi|328957401|ref|YP_004374787.1| ribosome recycling factor [Carnobacterium sp. 17-4] gi|328673725|gb|AEB29771.1| ribosome recycling factor [Carnobacterium sp. 17-4] Length = 185 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 72/178 (40%), Positives = 125/178 (70%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ +K++M T L++++ T+R GR + +LD + V YG+ PL Q+A +++ EPR+L Sbjct: 6 LETMKEKMVKTEGALQRELGTIRAGRANAGLLDRINVVYYGAPTPLKQLAQISIPEPRVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK ++ +E+ I +S+LG++P +G V+R+ +P+ TEERR L K AE +K Sbjct: 66 MVTPFDKTSISDIEKAIMQSDLGISPANDGNVIRLVIPQLTEERRKELAKKVGKEAENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +SVRNIRR+ +D LKK+ K+ + ++D + + E DIQKIT++++KNID +K+KE++ Sbjct: 126 VSVRNIRREAIDELKKAEKNNEITQDDLRTFEEDIQKITNTSVKNIDGIAADKEKELL 183 >gi|226327052|ref|ZP_03802570.1| hypothetical protein PROPEN_00913 [Proteus penneri ATCC 35198] gi|225204270|gb|EEG86624.1| hypothetical protein PROPEN_00913 [Proteus penneri ATCC 35198] Length = 202 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 80/180 (44%), Positives = 116/180 (64%), Gaps = 1/180 (0%) Query: 8 QNIKDRMGDTISFLKKDMMT-LRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ ++RM ++ LKK + +RTGR SPS+LD + VE YG+ PLNQVANV + R L Sbjct: 23 KDAQERMDKSVEALKKSQINKVRTGRASPSLLDGIVVEYYGAPTPLNQVANVVAEDGRTL 82 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++V+D+ + +VE+ I S+LGLNP G ++R+P+P TEERR L+KV AE+ + Sbjct: 83 AITVFDRTLAPAVEKAIMASDLGLNPSSAGAIIRVPLPPLTEERRKDLIKVVRGDAEQGR 142 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+RNIRRD D +K K + SED ++DIQK+TD IK ID K+ E+M F Sbjct: 143 VSIRNIRRDANDKVKALLKDKEISEDDERRSQDDIQKLTDMFIKKIDDALALKEAELMEF 202 >gi|269960594|ref|ZP_06174966.1| Ribosome-recycling factor [Vibrio harveyi 1DA3] gi|269834671|gb|EEZ88758.1| Ribosome-recycling factor [Vibrio harveyi 1DA3] Length = 185 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 77/179 (43%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK ++ +RTGR PS+L + VE YG+ PLNQVANV + R L Sbjct: 7 KDAQERMDKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAPTPLNQVANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DKE+ VE+ I S+LGLNP+ G ++R+P+P TEERR LVK+ AE +++ Sbjct: 67 ITVFDKELTQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD LK K + SED +++IQK+TD +K ID K+KE+M Sbjct: 127 AVRNIRRDANSDLKGLLKDKEISEDEDRKAQDEIQKLTDVAVKKIDEVLAAKEKELMEV 185 >gi|54297625|ref|YP_123994.1| ribosome recycling factor [Legionella pneumophila str. Paris] gi|60390234|sp|Q5X4K0|RRF_LEGPA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|53751410|emb|CAH12828.1| Ribosome recycling factor [Legionella pneumophila str. Paris] Length = 185 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 79/179 (44%), Positives = 112/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ + RM TI L DM +RTGR + S+LD V V+ YGS PL+QVAN+T + R ++ Sbjct: 7 QDSEKRMKKTIEALHSDMSKIRTGRANASLLDHVMVDYYGSPTPLSQVANITTSDSRTIL 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+ W+K MVA++E+ I S+LGLNP G +R+P+P TEERR L+KV E+ ++ Sbjct: 67 VTPWEKSMVAAIEKAILNSDLGLNPATAGTAIRVPMPPLTEERRKELIKVVRHEGEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RNIRRD + LK+ K SED IQK+TD I +D+ EK+K++M Sbjct: 127 SIRNIRRDANNQLKELVKEKAISEDDERRAAEAIQKLTDRYISEVDAVLAEKEKDLMEI 185 >gi|28899089|ref|NP_798694.1| ribosome recycling factor [Vibrio parahaemolyticus RIMD 2210633] gi|153839719|ref|ZP_01992386.1| ribosome recycling factor [Vibrio parahaemolyticus AQ3810] gi|260876829|ref|ZP_05889184.1| ribosome recycling factor [Vibrio parahaemolyticus AN-5034] gi|31076875|sp|Q8GRF5|RRF_VIBPA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|33357058|pdb|1IS1|A Chain A, Crystal Structure Of Ribosome Recycling Factor From Vibrio Parahaemolyticus gi|23491649|dbj|BAC16794.1| ribosome recycling factor [Vibrio parahaemolyticus] gi|28807313|dbj|BAC60578.1| ribosome recycling factor [Vibrio parahaemolyticus RIMD 2210633] gi|149746755|gb|EDM57743.1| ribosome recycling factor [Vibrio parahaemolyticus AQ3810] gi|308091503|gb|EFO41198.1| ribosome recycling factor [Vibrio parahaemolyticus AN-5034] gi|328474374|gb|EGF45179.1| ribosome recycling factor [Vibrio parahaemolyticus 10329] Length = 185 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 77/179 (43%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK ++ +RTGR PS+L + VE YG+ PLNQVANV + R L Sbjct: 7 KDAQERMDKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAATPLNQVANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DKE+ VE+ I S+LGLNP+ G ++R+P+P TEERR LVK+ AE ++ Sbjct: 67 ITVFDKELTQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD + LK K + SED + +IQK+TD +K ID K+KE+M Sbjct: 127 AVRNIRRDANNDLKALLKDKEISEDEDRKAQEEIQKLTDVAVKKIDEVLAAKEKELMEV 185 >gi|260897261|ref|ZP_05905757.1| ribosome recycling factor [Vibrio parahaemolyticus Peru-466] gi|308085361|gb|EFO35056.1| ribosome recycling factor [Vibrio parahaemolyticus Peru-466] Length = 180 Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 77/179 (43%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK ++ +RTGR PS+L + VE YG+ PLNQVANV + R L Sbjct: 2 KDAQERMDKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAATPLNQVANVVAEDARTLA 61 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DKE+ VE+ I S+LGLNP+ G ++R+P+P TEERR LVK+ AE ++ Sbjct: 62 ITVFDKELTQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGRV 121 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD + LK K + SED + +IQK+TD +K ID K+KE+M Sbjct: 122 AVRNIRRDANNDLKALLKDKEISEDEDRKAQEEIQKLTDVAVKKIDEVLAAKEKELMEV 180 >gi|118443357|ref|YP_878219.1| ribosome recycling factor [Clostridium novyi NT] gi|166230781|sp|A0Q0R7|RRF_CLONN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|118133813|gb|ABK60857.1| ribosome recycling factor [Clostridium novyi NT] Length = 185 Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 78/180 (43%), Positives = 119/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M +IS LKKD+ +++ G+ +P+MLD V VE YGS P+NQ+ANV+ EPR+L Sbjct: 6 LNKSEEKMLKSISVLKKDLGSMKAGKANPAMLDRVNVEYYGSETPINQLANVSSPEPRVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WDK + +E+ I +S+LGLNP +G V+R+ +PE TEE R +VK E+SK Sbjct: 66 LIQPWDKNSLKDIEKAILQSDLGLNPSNDGSVIRLIIPELTEETRKDIVKKVKKIGEESK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++R+IRR+G D +K +K+ +ED E+ +QKITD I ID+ K+KE+M Sbjct: 126 IAIRSIRREGNDKIKNLKKNNDITEDEAKEGESSVQKITDKYITEIDNIVSAKEKEVMSV 185 >gi|19553226|ref|NP_601228.1| ribosome recycling factor [Corynebacterium glutamicum ATCC 13032] gi|62390862|ref|YP_226264.1| ribosome recycling factor [Corynebacterium glutamicum ATCC 13032] gi|24418653|sp|Q8NP03|RRF_CORGL RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|21324793|dbj|BAB99416.1| Ribosome recycling factor [Corynebacterium glutamicum ATCC 13032] gi|41326201|emb|CAF20363.1| RIBOSOME RECYCLING FACTOR [Corynebacterium glutamicum ATCC 13032] Length = 185 Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 73/175 (41%), Positives = 112/175 (64%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 ++RM T+ ++D+ T+RTGR +P+M + V E YG P+ Q++ +TV EPRML++ Sbjct: 10 EERMTATVEHTREDLTTIRTGRANPAMFNGVMAEYYGVPTPITQMSGITVPEPRMLLIKP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 ++ + +E I S+LG+NP +GQVLR+ +P+ TEERR +VK+A E KI++R Sbjct: 70 YEMSSMQVIENAIRNSDLGVNPTNDGQVLRVTIPQLTEERRKDMVKLAKGKGEDGKIAIR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 NIRR GMD LKK +K G A ED V + E ++ K+T + +D K+KE+M Sbjct: 130 NIRRKGMDQLKKLQKDGDAGEDEVQAAEKELDKVTAGFVAQVDEVVARKEKELME 184 >gi|212695690|ref|ZP_03303818.1| hypothetical protein ANHYDRO_00207 [Anaerococcus hydrogenalis DSM 7454] gi|212677363|gb|EEB36970.1| hypothetical protein ANHYDRO_00207 [Anaerococcus hydrogenalis DSM 7454] Length = 185 Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 72/158 (45%), Positives = 103/158 (65%) Query: 28 LRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESN 87 +R GR + S+LD + YGS P+NQ A ++ EPR+LV+ WDK + +E+ I++S+ Sbjct: 27 IRAGRANDSILDGLTFSYYGSQTPINQAATISTPEPRLLVIKPWDKSNIKEIEKAINKSD 86 Query: 88 LGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSG 147 +G+NP +G+V+R+P P TEERR L K + Y+E SKI +RNIRRD +D KK KS Sbjct: 87 IGINPQNDGEVIRLPFPALTEERRKDLTKQVNEYSEDSKIQIRNIRRDSLDTAKKGEKSA 146 Query: 148 KASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +ED + S+E DIQKIT I NI+ E K KE++ Sbjct: 147 DLTEDDLFSIEEDIQKITKKYIDNIEKIAENKNKELLE 184 >gi|27467853|ref|NP_764490.1| ribosome recycling factor [Staphylococcus epidermidis ATCC 12228] gi|57866733|ref|YP_188408.1| ribosome recycling factor [Staphylococcus epidermidis RP62A] gi|293366777|ref|ZP_06613453.1| ribosome recycling factor [Staphylococcus epidermidis M23864:W2(grey)] gi|33301559|sp|Q8CSU0|RRF_STAES RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|62900782|sp|Q5HPT2|RRF_STAEQ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|27315398|gb|AAO04532.1|AE016747_29 ribosome recycling factor [Staphylococcus epidermidis ATCC 12228] gi|57637391|gb|AAW54179.1| ribosome recycling factor [Staphylococcus epidermidis RP62A] gi|291319078|gb|EFE59448.1| ribosome recycling factor [Staphylococcus epidermidis M23864:W2(grey)] gi|329736280|gb|EGG72552.1| ribosome recycling factor [Staphylococcus epidermidis VCU028] gi|329736543|gb|EGG72809.1| ribosome recycling factor [Staphylococcus epidermidis VCU045] Length = 184 Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 77/180 (42%), Positives = 118/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +++ K RM +I L +++ + GR + ++L+ V V+ YG+ P+ Q+A++ V E R+L Sbjct: 5 IKDTKSRMQKSIDNLSRELANISAGRANSNLLNGVTVDYYGAPTPVQQLASINVPEARLL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+S +DK VA +E+ I +NLG+NP +G+V+RI VP TEERR LVK E +K Sbjct: 65 VISPYDKSSVADIEKAIIAANLGVNPTSDGEVIRISVPALTEERRKELVKEVKKIGEDAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+RNIRRD D LKK K+G +ED + S +D+QK TD++IK ID +K+K+IM Sbjct: 125 VSIRNIRRDINDQLKKDEKNGDITEDDLRSQTDDVQKATDNSIKEIDQLVADKEKDIMSV 184 >gi|302670318|ref|YP_003830278.1| ribosome recycling factor Frr [Butyrivibrio proteoclasticus B316] gi|302394791|gb|ADL33696.1| ribosome recycling factor Frr [Butyrivibrio proteoclasticus B316] Length = 183 Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 77/178 (43%), Positives = 115/178 (64%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ D+M + +L++D+ ++R GR +P +LD +KV+ YG+ PL QV NV+V E R++ Sbjct: 5 LKAYNDKMQKSFDYLREDLASIRAGRANPHVLDKIKVDYYGTPTPLQQVGNVSVPEARII 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WDK ++ +E+ I S+LG+ P +G V+R+ PE TEERR L K E +K Sbjct: 65 QIAPWDKTLIKDIEKAIMMSDLGITPSNDGTVIRLVFPELTEERRKQLTKDIRKKGEDAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++VRN+RRDG D KK K + SED + L ++QKITD IK+ID EEK KE+M Sbjct: 125 VAVRNVRRDGNDAFKKL-KGTEVSEDEINDLNEELQKITDKFIKDIDVAVEEKNKEVM 181 >gi|217964539|ref|YP_002350217.1| ribosome recycling factor [Listeria monocytogenes HCC23] gi|290893573|ref|ZP_06556556.1| ribosome recycling factor [Listeria monocytogenes FSL J2-071] gi|315282161|ref|ZP_07870629.1| ribosome recycling factor [Listeria marthii FSL S4-120] gi|254809517|sp|B8DG13|RRF_LISMH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|217333809|gb|ACK39603.1| ribosome recycling factor [Listeria monocytogenes HCC23] gi|290556918|gb|EFD90449.1| ribosome recycling factor [Listeria monocytogenes FSL J2-071] gi|307570895|emb|CAR84074.1| frr [Listeria monocytogenes L99] gi|313608995|gb|EFR84735.1| ribosome recycling factor [Listeria monocytogenes FSL F2-208] gi|313614193|gb|EFR87869.1| ribosome recycling factor [Listeria marthii FSL S4-120] Length = 185 Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 77/180 (42%), Positives = 121/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K++M L + + T+R GR + S+LD + V+ YG+ P+NQ+A+++V E RML Sbjct: 6 LSKSKEKMEKAEQALTRQLGTIRAGRANASLLDRLSVDYYGAATPVNQMASISVPEARML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK ++ +E+ I +S+LGL P +G VLR+ +P+ TEERR LVK AE++K Sbjct: 66 LITPYDKTILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRR+ + LKK KSG +ED + S D+QK+TD +IKNIDS ++K+ EI+ Sbjct: 126 VAVRNIRREANEELKKLEKSGDITEDDLRSYGEDVQKLTDESIKNIDSITKDKEAEILEV 185 >gi|52841939|ref|YP_095738.1| ribosome recycling factor [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|54294594|ref|YP_127009.1| ribosome recycling factor [Legionella pneumophila str. Lens] gi|148359246|ref|YP_001250453.1| ribosome recycling factor [Legionella pneumophila str. Corby] gi|296107291|ref|YP_003618991.1| Ribosome recycling factor [Legionella pneumophila 2300/99 Alcoy] gi|60390233|sp|Q5WVZ0|RRF_LEGPL RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|60390237|sp|Q5ZUT1|RRF_LEGPH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166230796|sp|A5ICK7|RRF_LEGPC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|52629050|gb|AAU27791.1| ribosome recycling factor [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53754426|emb|CAH15910.1| Ribosome recycling factor [Legionella pneumophila str. Lens] gi|148281019|gb|ABQ55107.1| ribosome recycling factor [Legionella pneumophila str. Corby] gi|295649192|gb|ADG25039.1| Ribosome recycling factor [Legionella pneumophila 2300/99 Alcoy] gi|307610406|emb|CBW99976.1| ribosome recycling factor [Legionella pneumophila 130b] Length = 185 Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 79/179 (44%), Positives = 112/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ + RM TI L DM +RTGR + S+LD V V+ YGS PL+QVAN+T + R ++ Sbjct: 7 QDSEKRMKKTIEALHTDMSKIRTGRANASLLDHVMVDYYGSPTPLSQVANITTSDSRTIL 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+ W+K MVA++E+ I S+LGLNP G +R+P+P TEERR L+KV E+ ++ Sbjct: 67 VTPWEKSMVAAIEKAILNSDLGLNPATAGTAIRVPMPPLTEERRKELIKVVRHEGEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RNIRRD + LK+ K SED IQK+TD I +D+ EK+K++M Sbjct: 127 SIRNIRRDANNQLKELVKEKAISEDDERRAAEAIQKLTDRYISEVDAVLAEKEKDLMEI 185 >gi|218295073|ref|ZP_03495909.1| ribosome recycling factor [Thermus aquaticus Y51MC23] gi|218244276|gb|EED10801.1| ribosome recycling factor [Thermus aquaticus Y51MC23] Length = 185 Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 81/184 (44%), Positives = 117/184 (63%), Gaps = 7/184 (3%) Query: 9 NIKDRMGDTISFLKK-------DMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 N+KD +T S ++K ++ LRTGR +P++L +KVE YG+ VPL+Q+A V+ Sbjct: 2 NLKDLYAETRSHMQKSLEALEHNLSGLRTGRANPALLLHLKVEYYGTPVPLSQIATVSAP 61 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 + R LVV WD+ + ++E+ I +S+LGLNP +G L I +P TEERR LVK A Y Sbjct: 62 DARTLVVQSWDQNALKAIEKAIRDSDLGLNPSNKGDALYINIPPLTEERRKELVKAARHY 121 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 AE+ +I++RNIRR+ ++ LKK K SED E +IQKITD I +D E+K+ Sbjct: 122 AEEGRIAIRNIRREALEKLKKLAKELHLSEDDTKRAEAEIQKITDEFIAKVDELLEKKEA 181 Query: 182 EIMH 185 EI+H Sbjct: 182 EILH 185 >gi|225024279|ref|ZP_03713471.1| hypothetical protein EIKCOROL_01154 [Eikenella corrodens ATCC 23834] gi|224943304|gb|EEG24513.1| hypothetical protein EIKCOROL_01154 [Eikenella corrodens ATCC 23834] Length = 185 Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 76/172 (44%), Positives = 113/172 (65%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M ++ L++++ +RTGR +LD V+VE YGS VP++QVANVT+L+ R + V ++ Sbjct: 12 KMQRSVEVLRENLAKVRTGRAHTGLLDQVEVEYYGSMVPVSQVANVTLLDARTISVKPYE 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 M A+VE+ I +SNLGLNP G ++R+P+P TEERR L+KV AE ++S+RN+ Sbjct: 72 GNMAAAVEKAIRDSNLGLNPASMGDLIRVPMPMLTEERRKDLIKVVRGEAEDGRVSIRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD DH+KK K + SED E IQK+TD I +D E K++++M Sbjct: 132 RRDANDHIKKLLKDKEVSEDDARRGEEQIQKLTDKYIAEVDKLLEHKEEDLM 183 >gi|33152634|ref|NP_873987.1| ribosome recycling factor [Haemophilus ducreyi 35000HP] gi|38372405|sp|Q7VL83|RRF_HAEDU RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|33148858|gb|AAP96376.1| ribosome recycling factor [Haemophilus ducreyi 35000HP] Length = 185 Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 75/179 (41%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM ++ LK + +RTGR PS+LD ++VE YGS PL QVANV + R L Sbjct: 7 KDTQQRMEKSLEALKSHISKIRTGRAQPSLLDGIQVEYYGSATPLRQVANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+V+D+ ++++VE+ I S+LGLNP G +R+P+P TEERR L+K+ E+ KI Sbjct: 67 VNVFDRSLISAVEKAILTSDLGLNPSSAGATIRVPLPALTEERRRDLIKIVKNEGEQGKI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD D +K K + SED +++IQKITD +K +D K+KE++ F Sbjct: 127 AIRNVRRDANDQIKALLKDKEISEDEERKAQDEIQKITDGYVKKVDEVLMAKEKELLDF 185 >gi|326798845|ref|YP_004316664.1| ribosome-recycling factor [Sphingobacterium sp. 21] gi|326549609|gb|ADZ77994.1| Ribosome-recycling factor [Sphingobacterium sp. 21] Length = 187 Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 78/186 (41%), Positives = 119/186 (63%), Gaps = 3/186 (1%) Query: 1 MNQVIDLQ--NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 MN +I LQ + D M IS + ++ +R G+ PSMLD + V+ YG+ PL+QV N+ Sbjct: 1 MNDLIKLQLEDANDSMQKAISHTESELTKIRAGKAMPSMLDGINVDYYGTPTPLSQVGNI 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 +PR LV+ W+K +++++ER I +SN+GLNP +G ++R+ VP TEERR LV+ Sbjct: 61 NTPDPRSLVIQPWEKNLLSAIERAIIDSNIGLNPQNDGNIIRLAVPPLTEERRRELVRKV 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 AEK K+++RNIR+D D +KK + G SED + E ++QK+TD+ I +D E Sbjct: 121 KEEAEKGKVAIRNIRKDANDGIKKLKNDG-VSEDEIKVGEGEVQKLTDNFIAKVDKLAEA 179 Query: 179 KKKEIM 184 K+K+IM Sbjct: 180 KEKDIM 185 >gi|323697430|ref|ZP_08109342.1| ribosome recycling factor [Desulfovibrio sp. ND132] gi|323457362|gb|EGB13227.1| ribosome recycling factor [Desulfovibrio desulfuricans ND132] Length = 184 Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 77/180 (42%), Positives = 114/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + K RM I+ L KD LRTGR + +++D + V+ YG+ P++Q+++V+V + + + Sbjct: 5 LDDGKKRMSGAITALDKDFSKLRTGRATTALVDSILVDYYGTPTPISQLSSVSVPDSKTI 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK SVE+ I S+LGLNP+ +G+++RI +P TEERR LVKVA Y E +K Sbjct: 65 TIQPWDKGAFGSVEKAIQTSDLGLNPVNDGKIIRISIPPLTEERRKELVKVAKKYTEDAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RN+RRD D LKK K + SED E D+QK+TD +K D K+KEI+ Sbjct: 125 IAIRNVRRDMNDALKKMEKDKEISEDDQRRSEADVQKMTDDYVKKADEVMAAKEKEILEI 184 >gi|123443482|ref|YP_001007455.1| ribosome recycling factor [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332160595|ref|YP_004297172.1| ribosome recycling factor [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|166231529|sp|A1JP79|RRF_YERE8 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|122090443|emb|CAL13311.1| ribosome recycling factor [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318606927|emb|CBY28425.1| ribosome recycling factor [Yersinia enterocolitica subsp. palearctica Y11] gi|325664825|gb|ADZ41469.1| ribosome recycling factor [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330859602|emb|CBX69942.1| ribosome-recycling factor [Yersinia enterocolitica W22703] Length = 185 Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 75/174 (43%), Positives = 114/174 (65%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM + + + +RTGR SPS+LD ++VE YG+ PL Q+AN+ V + R L ++V+D Sbjct: 12 RMEKCLEVFQNHISKIRTGRASPSILDGIQVEYYGTATPLRQLANIVVEDSRTLALTVFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + + A+VE+ I S+LGLNP G V+R+P+P TEERR L+KV A AE+ ++S+RN+ Sbjct: 72 RSLSAAVEKAIMTSDLGLNPSSAGTVIRVPLPALTEERRKDLIKVVRAEAEQGRVSIRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD + +K K + SED ++DIQK+TD+ IK +D+ K+ E+M F Sbjct: 132 RRDANEKVKALLKDKEISEDEDRRSQDDIQKLTDAFIKKVDAALAAKETELMDF 185 >gi|73541567|ref|YP_296087.1| ribosome recycling factor [Ralstonia eutropha JMP134] gi|123624825|sp|Q470E0|RRF_RALEJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|72118980|gb|AAZ61243.1| ribosome recycling factor [Ralstonia eutropha JMP134] Length = 186 Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 77/177 (43%), Positives = 114/177 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++++ +M +I K D+ +RTGR +LD V+V+ YGS VP++QVAN+ + + R + Sbjct: 8 KSVEQKMQKSIEAFKADLAKVRTGRAHVGLLDHVQVDYYGSMVPISQVANIGLGDARTIT 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K+MV +VE+ I + +LGLNP G+V+R+P+P TEERR L KV AE +KI Sbjct: 68 VQPWEKKMVGAVEKAIRDCDLGLNPATMGEVIRVPMPPLTEERRKELTKVVKGEAEGAKI 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +VRN+RRD + KK K SED ++D+QK+TD + ID EK+KEIM Sbjct: 128 AVRNLRRDANEQFKKLVKDKAISEDDERRGQDDVQKLTDKYVAEIDKMVAEKEKEIM 184 >gi|329724306|gb|EGG60818.1| ribosome recycling factor [Staphylococcus epidermidis VCU144] Length = 184 Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 77/180 (42%), Positives = 118/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +++ K RM +I L +++ + GR + ++L+ V V+ YG+ P+ Q+A++ V E R+L Sbjct: 5 IKDTKSRMQKSIDNLSRELANISAGRANSNLLNGVTVDYYGAPTPVQQLASINVPEARLL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+S +DK VA +E+ I +NLG+NP +G+V+RI VP TEERR LVK E +K Sbjct: 65 VISPYDKTSVADIEKAIIAANLGVNPTSDGEVIRISVPALTEERRKELVKEVKKIGEDAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+RNIRRD D LKK K+G +ED + S +D+QK TD++IK ID +K+K+IM Sbjct: 125 VSIRNIRRDINDQLKKDEKNGDITEDDLRSQTDDVQKATDNSIKEIDQLVTDKEKDIMSV 184 >gi|314933438|ref|ZP_07840803.1| ribosome recycling factor [Staphylococcus caprae C87] gi|313653588|gb|EFS17345.1| ribosome recycling factor [Staphylococcus caprae C87] Length = 184 Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 77/180 (42%), Positives = 118/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +++ K RM +I L +++ + GR + ++L+ V V+ YG+ P+ Q+A++ V E R+L Sbjct: 5 IKDTKARMQKSIDNLSRELANISAGRANSNLLNGVTVDYYGAPTPVQQLASINVPEARLL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+S +DK V +E+ I +NLG+NP +G+V+RI VP TEERR LVK E +K Sbjct: 65 VISPYDKTSVDDIEKAIIAANLGVNPTSDGEVIRISVPALTEERRKELVKNVKKIGEDAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+RNIRRD DHLKK K G +ED + S +D+QK TD++IK ID E+K+++IM Sbjct: 125 VSIRNIRRDINDHLKKQEKKGDITEDDLRSQTDDVQKATDNSIKEIDQLVEDKEQDIMSV 184 >gi|332686704|ref|YP_004456478.1| ribosome recycling factor [Melissococcus plutonius ATCC 35311] gi|332370713|dbj|BAK21669.1| ribosome recycling factor [Melissococcus plutonius ATCC 35311] Length = 185 Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 72/180 (40%), Positives = 120/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ +RM L++++ +R GR + S+LD ++VE YG P+NQ+A +++ E R+L Sbjct: 6 LKETTERMKKAEQNLQRELGQIRAGRANASLLDRIQVEYYGVMTPVNQLATISIPEARIL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK + +ER I S++G++P +G ++R+ +P+ TEERR L K AE +K Sbjct: 66 MITPFDKNSIKDIERAIQASDIGISPTSDGNIIRLVIPQLTEERRKELAKEVKKEAENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I+VRNIRRD MD LKK K+G +ED + + E D+Q++TD++IKN+D+ EK+ EI+ Sbjct: 126 IAVRNIRRDTMDTLKKQNKNGDITEDELHTSEKDVQQLTDNSIKNLDNIASEKEAEILEV 185 >gi|257453214|ref|ZP_05618513.1| ribosome recycling factor (RRF) [Fusobacterium sp. 3_1_5R] gi|317059748|ref|ZP_07924233.1| ribosome recycling factor [Fusobacterium sp. 3_1_5R] gi|313685424|gb|EFS22259.1| ribosome recycling factor [Fusobacterium sp. 3_1_5R] Length = 189 Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 79/180 (43%), Positives = 119/180 (66%), Gaps = 4/180 (2%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q +++M TI K+ ++R GR S +MLD +KVE YGS +PLNQVA V+ E R+L Sbjct: 8 IQECQNKMQKTIEATKEKFTSIRAGRASVAMLDNIKVEQYGSDMPLNQVATVSAPEARLL 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK M+ +E+ I +NLG+NP +G+V+R+ +PE T +RR VK+A AE K Sbjct: 68 VIDPWDKTMIPKIEKAILAANLGMNPNNDGRVVRLVMPELTADRRKEYVKLAKKEAENGK 127 Query: 127 ISVRNIRRD---GMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 I+VRNIR+D + ++K ++SG SED + E ++Q +TD TIK++D +K+KEI Sbjct: 128 IAVRNIRKDMNTALKKIEKDKESG-MSEDELKRFEAEVQTLTDKTIKDLDDLLAKKEKEI 186 >gi|306819855|ref|ZP_07453509.1| ribosome recycling factor [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304552102|gb|EFM40039.1| ribosome recycling factor [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 185 Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 75/176 (42%), Positives = 113/176 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q ++M TIS LK+D+ T+RTGR +P MLD + V+ YG+ P+ Q+A ++ +PR L Sbjct: 7 QTTNEKMEKTISVLKEDLNTIRTGRANPKMLDKLTVDYYGTVTPVKQIAAISSPDPRTLQ 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + WDK + +E+ I ++LG+NP +G ++RI +P+ TEERR LVK A E++K+ Sbjct: 67 IQPWDKSSLHLIEKAIQVADLGVNPTNDGLIIRISIPQLTEERRKELVKQAQKMGEQAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 ++RN+RRD D +KK K G +ED +DIQK+TD IK ID K+K+I Sbjct: 127 AIRNLRRDANDLIKKGEKDGSIAEDEAKKELDDIQKLTDEHIKAIDGVIANKEKDI 182 >gi|206900181|ref|YP_002250924.1| ribosome recycling factor [Dictyoglomus thermophilum H-6-12] gi|206739284|gb|ACI18342.1| ribosome recycling factor [Dictyoglomus thermophilum H-6-12] Length = 185 Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 73/179 (40%), Positives = 115/179 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + I+++M + +KK+ +RTG+ S + D +K+ YG+ +PLNQVA + + E R + Sbjct: 6 FKEIEEKMKKAVEVVKKEFQGIRTGKPSIGIFDEIKISYYGNMMPLNQVATLKIAEGRTV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WDK ++ +E+ I +S LGL P +GQV+R+ P TEERR LVKV H AE + Sbjct: 66 LIQPWDKSIIGEIEKAILKSELGLTPQNDGQVIRVVFPPLTEERRKELVKVVHKEAENGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +++RNIRRD ++ KK ++ GK SED L+ ++QK+TD I+ I+ E K+KEIM Sbjct: 126 VAIRNIRRDYLEIFKKEKQEGKISEDEFYRLQEELQKMTDKFIEEIEKLIEMKEKEIME 184 >gi|312796247|ref|YP_004029169.1| ribosome Recycling Factor (RRF) [Burkholderia rhizoxinica HKI 454] gi|312168022|emb|CBW75025.1| Ribosome Recycling Factor (RRF) [Burkholderia rhizoxinica HKI 454] Length = 186 Score = 154 bits (390), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 74/172 (43%), Positives = 114/172 (66%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M ++ K D+ +RTGR +LD ++V+ YGS+VP++QVAN+T+++ R + V W+ Sbjct: 13 KMQRSLEAFKSDLAKIRTGRAHTGLLDHIQVDYYGSNVPISQVANLTLVDARTIGVQPWE 72 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K+MVA VE+ I ES+LGLNP +G ++R+P+P TEERR L KV + E +K++VRN+ Sbjct: 73 KKMVAVVEKAIRESDLGLNPATQGDLIRVPMPALTEERRRELTKVVKSEGESAKVAVRNL 132 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD D LKK K SED ++++QK+TD + I+ + K+ EIM Sbjct: 133 RRDANDQLKKLLKDKDISEDDERRAQDEVQKLTDKFVAEIEKLVQTKETEIM 184 >gi|294635121|ref|ZP_06713632.1| ribosome recycling factor [Edwardsiella tarda ATCC 23685] gi|291091498|gb|EFE24059.1| ribosome recycling factor [Edwardsiella tarda ATCC 23685] Length = 185 Score = 154 bits (390), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 76/174 (43%), Positives = 112/174 (64%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM + K ++ +RTGR P++LD ++VE YG+ PL Q+AN+ + R L V+V+D Sbjct: 12 RMEKCVESFKGNISKIRTGRAHPNLLDGIQVEYYGAATPLRQLANIVAEDSRTLAVTVFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + M ++E+ I S+LGLNP G V+R+P+P TEERR L+K+ + AE ++SVRN+ Sbjct: 72 RSMSGAIEKAILTSDLGLNPSSAGTVIRVPLPPLTEERRKDLIKLVRSEAESGRVSVRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD D +K K + SED ++DIQKITD IK ID+ +K+KE+M F Sbjct: 132 RRDANDKVKALLKDKEISEDEDRKSQDDIQKITDLMIKKIDAALADKEKELMEF 185 >gi|325579128|ref|ZP_08149084.1| ribosome recycling factor [Haemophilus parainfluenzae ATCC 33392] gi|301155649|emb|CBW15117.1| ribosome recycling factor [Haemophilus parainfluenzae T3T1] gi|325159363|gb|EGC71497.1| ribosome recycling factor [Haemophilus parainfluenzae ATCC 33392] Length = 185 Score = 154 bits (390), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 74/179 (41%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ + RM ++ L+ + +RTGR PS+LD ++VE YG+ PL Q+ANV + R L Sbjct: 7 QDAEARMEKSLEALRGHIAKIRTGRAQPSLLDAIQVEYYGAATPLRQLANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+V+D+ ++++VE+ I S+LGLNP G +R+P+P TEERR L+K+ + E+ K+ Sbjct: 67 VTVFDRSLISAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIVKSEGEQGKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD D +K K + SE+ E IQK+TDS IK +D +K+KE+M F Sbjct: 127 AIRNVRRDANDKIKALLKDKEISENDQHKAEEIIQKVTDSYIKKVDEILADKEKELMDF 185 >gi|262276524|ref|ZP_06054333.1| ribosome recycling factor [Grimontia hollisae CIP 101886] gi|262220332|gb|EEY71648.1| ribosome recycling factor [Grimontia hollisae CIP 101886] Length = 185 Score = 154 bits (390), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 75/178 (42%), Positives = 114/178 (64%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 + K+RM ++ LK + +RTGR P++LD + V+ YG+ PL Q+A++ + R L + Sbjct: 8 DAKERMQKSVEALKNTLSKIRTGRAHPALLDGLSVDYYGASTPLKQLASIVAEDARTLAI 67 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 +V+DK + +VE+ I S+LGLNP+ G V+R+P+P TEERR LVK+ AE +++ Sbjct: 68 TVFDKSITQAVEKAIMTSDLGLNPMSAGTVIRVPLPPLTEERRRDLVKIVRGEAEGGRVA 127 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 VRNIRRD LK K + SED ++DIQK+TD+ +K ID+ E K+KE+M Sbjct: 128 VRNIRRDANSELKALLKEKEISEDEERRGQDDIQKLTDAAVKEIDTILEAKEKELMEV 185 >gi|91788554|ref|YP_549506.1| ribosome recycling factor [Polaromonas sp. JS666] gi|123059788|sp|Q12A34|RRF_POLSJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|91697779|gb|ABE44608.1| ribosome recycling factor [Polaromonas sp. JS666] Length = 186 Score = 154 bits (390), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 76/177 (42%), Positives = 114/177 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 QN + +M ++ K + +RTGR +P +LD V V+ YGS VP++QVANV++L+ R + Sbjct: 8 QNAEQKMQQSVDSFKNSLTKIRTGRANPGLLDTVHVDYYGSMVPISQVANVSLLDARTIS 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 VS W+K M A +E+ I +S+LGLNP +G ++R+P+P TEERR L KV A E +K+ Sbjct: 68 VSPWEKGMGAKIEKAIRDSDLGLNPAAQGDLIRVPMPAMTEERRKELTKVVRAEGEHAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +VRN+RRD + +KK K SED +++IQK TD I +D K+++IM Sbjct: 128 AVRNLRRDANEGVKKLLKEKLVSEDDERRAQDEIQKFTDRFIAEVDKLVAGKEQDIM 184 >gi|227890626|ref|ZP_04008431.1| ribosome recycling factor, RRF [Lactobacillus salivarius ATCC 11741] gi|301300274|ref|ZP_07206483.1| ribosome recycling factor [Lactobacillus salivarius ACS-116-V-Col5a] gi|227867564|gb|EEJ74985.1| ribosome recycling factor, RRF [Lactobacillus salivarius ATCC 11741] gi|300852115|gb|EFK79790.1| ribosome recycling factor [Lactobacillus salivarius ACS-116-V-Col5a] Length = 187 Score = 154 bits (390), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 74/179 (41%), Positives = 121/179 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +++M L++++ +R GR + S+L+ + VE YG+ PLNQ+A ++V E R+L Sbjct: 8 IKEAQEKMTKAEDSLRRELGNIRAGRANASLLNRINVEYYGAPTPLNQMAQISVPEARVL 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + ++E I S+LG+ P+ +G +R+ +P+ TEERR L K A +E K Sbjct: 68 LVTPYDKSSLKNIEHAIMASDLGIAPMNDGTAIRLVIPQLTEERRKELAKQVKAVSETGK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRNIRRD MD LKK++K+G +ED + LEN QK+TD +IKNID E+K+KE++ Sbjct: 128 VAVRNIRRDMMDALKKAQKNGDLTEDDLRDLENQAQKVTDESIKNIDKITEDKEKEVLE 186 >gi|53719765|ref|YP_108751.1| ribosome recycling factor [Burkholderia pseudomallei K96243] gi|53723736|ref|YP_103192.1| ribosome recycling factor [Burkholderia mallei ATCC 23344] gi|67641707|ref|ZP_00440476.1| ribosome recycling factor [Burkholderia mallei GB8 horse 4] gi|76809671|ref|YP_333972.1| ribosome recycling factor [Burkholderia pseudomallei 1710b] gi|121598549|ref|YP_993369.1| ribosome recycling factor [Burkholderia mallei SAVP1] gi|124384027|ref|YP_001029194.1| ribosome recycling factor [Burkholderia mallei NCTC 10229] gi|126439886|ref|YP_001059466.1| ribosome recycling factor [Burkholderia pseudomallei 668] gi|126449064|ref|YP_001080876.1| ribosome recycling factor [Burkholderia mallei NCTC 10247] gi|126454912|ref|YP_001066749.1| ribosome recycling factor [Burkholderia pseudomallei 1106a] gi|134277912|ref|ZP_01764627.1| ribosome recycling factor [Burkholderia pseudomallei 305] gi|167000553|ref|ZP_02266364.1| ribosome recycling factor [Burkholderia mallei PRL-20] gi|167720163|ref|ZP_02403399.1| ribosome recycling factor [Burkholderia pseudomallei DM98] gi|167739168|ref|ZP_02411942.1| ribosome recycling factor [Burkholderia pseudomallei 14] gi|167816379|ref|ZP_02448059.1| ribosome recycling factor [Burkholderia pseudomallei 91] gi|167824757|ref|ZP_02456228.1| ribosome recycling factor [Burkholderia pseudomallei 9] gi|167846289|ref|ZP_02471797.1| ribosome recycling factor [Burkholderia pseudomallei B7210] gi|167894871|ref|ZP_02482273.1| ribosome recycling factor [Burkholderia pseudomallei 7894] gi|167903260|ref|ZP_02490465.1| ribosome recycling factor [Burkholderia pseudomallei NCTC 13177] gi|167911501|ref|ZP_02498592.1| ribosome recycling factor [Burkholderia pseudomallei 112] gi|167919510|ref|ZP_02506601.1| ribosome recycling factor [Burkholderia pseudomallei BCC215] gi|217421741|ref|ZP_03453245.1| ribosome recycling factor [Burkholderia pseudomallei 576] gi|226200090|ref|ZP_03795636.1| ribosome recycling factor [Burkholderia pseudomallei Pakistan 9] gi|237812805|ref|YP_002897256.1| ribosome recycling factor [Burkholderia pseudomallei MSHR346] gi|242317615|ref|ZP_04816631.1| ribosome recycling factor [Burkholderia pseudomallei 1106b] gi|254177852|ref|ZP_04884507.1| ribosome recycling factor [Burkholderia mallei ATCC 10399] gi|254189290|ref|ZP_04895801.1| ribosome recycling factor [Burkholderia pseudomallei Pasteur 52237] gi|254197752|ref|ZP_04904174.1| ribosome recycling factor [Burkholderia pseudomallei S13] gi|254200144|ref|ZP_04906510.1| ribosome recycling factor [Burkholderia mallei FMH] gi|254206482|ref|ZP_04912834.1| ribosome recycling factor [Burkholderia mallei JHU] gi|254258794|ref|ZP_04949848.1| ribosome recycling factor [Burkholderia pseudomallei 1710a] gi|254297208|ref|ZP_04964661.1| ribosome recycling factor [Burkholderia pseudomallei 406e] gi|254358109|ref|ZP_04974382.1| ribosome recycling factor [Burkholderia mallei 2002721280] gi|60390239|sp|Q62JC7|RRF_BURMA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|60390241|sp|Q63T15|RRF_BURPS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|123598729|sp|Q3JR31|RRF_BURP1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166230765|sp|A3MKU0|RRF_BURM7 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166230766|sp|A2SB75|RRF_BURM9 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166230767|sp|A1V566|RRF_BURMS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166230768|sp|A3NWM8|RRF_BURP0 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166230769|sp|A3NAU5|RRF_BURP6 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|52210179|emb|CAH36158.1| ribosome recycling factor [Burkholderia pseudomallei K96243] gi|52427159|gb|AAU47752.1| ribosome recycling factor [Burkholderia mallei ATCC 23344] gi|76579124|gb|ABA48599.1| ribosome recycling factor [Burkholderia pseudomallei 1710b] gi|121227359|gb|ABM49877.1| ribosome recycling factor [Burkholderia mallei SAVP1] gi|124292047|gb|ABN01316.1| ribosome recycling factor [Burkholderia mallei NCTC 10229] gi|126219379|gb|ABN82885.1| ribosome recycling factor [Burkholderia pseudomallei 668] gi|126228554|gb|ABN92094.1| ribosome recycling factor [Burkholderia pseudomallei 1106a] gi|126241934|gb|ABO05027.1| ribosome recycling factor [Burkholderia mallei NCTC 10247] gi|134251562|gb|EBA51641.1| ribosome recycling factor [Burkholderia pseudomallei 305] gi|147749740|gb|EDK56814.1| ribosome recycling factor [Burkholderia mallei FMH] gi|147753925|gb|EDK60990.1| ribosome recycling factor [Burkholderia mallei JHU] gi|148027236|gb|EDK85257.1| ribosome recycling factor [Burkholderia mallei 2002721280] gi|157806852|gb|EDO84022.1| ribosome recycling factor [Burkholderia pseudomallei 406e] gi|157936969|gb|EDO92639.1| ribosome recycling factor [Burkholderia pseudomallei Pasteur 52237] gi|160698891|gb|EDP88861.1| ribosome recycling factor [Burkholderia mallei ATCC 10399] gi|169654493|gb|EDS87186.1| ribosome recycling factor [Burkholderia pseudomallei S13] gi|217395483|gb|EEC35501.1| ribosome recycling factor [Burkholderia pseudomallei 576] gi|225927774|gb|EEH23815.1| ribosome recycling factor [Burkholderia pseudomallei Pakistan 9] gi|237503136|gb|ACQ95454.1| ribosome recycling factor [Burkholderia pseudomallei MSHR346] gi|238522669|gb|EEP86112.1| ribosome recycling factor [Burkholderia mallei GB8 horse 4] gi|242140854|gb|EES27256.1| ribosome recycling factor [Burkholderia pseudomallei 1106b] gi|243063483|gb|EES45669.1| ribosome recycling factor [Burkholderia mallei PRL-20] gi|254217483|gb|EET06867.1| ribosome recycling factor [Burkholderia pseudomallei 1710a] Length = 186 Score = 154 bits (390), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 76/177 (42%), Positives = 114/177 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++++ +M +I K D+ +RTGR +LD V+V+ YGS VP++QVAN+T+++ R + Sbjct: 8 KSVEQKMQRSIEAFKNDLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVANLTLVDARTIG 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K MVA VE+ I E++LGLNP G ++R+P+P TEERR L KV + E +K+ Sbjct: 68 VQPWEKTMVAKVEKAIREADLGLNPATSGDLIRVPMPPLTEERRRELTKVVKSEGETAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +VRN+RRD + LKK K + SED +D+QK+TD + ID + K EIM Sbjct: 128 AVRNLRRDANEQLKKLVKDKEISEDDERRASDDVQKLTDKHVAEIDKLVQAKDAEIM 184 >gi|25028466|ref|NP_738520.1| ribosome recycling factor [Corynebacterium efficiens YS-314] gi|259507526|ref|ZP_05750426.1| ribosome recycling factor [Corynebacterium efficiens YS-314] gi|29336541|sp|Q8FP75|RRF_COREF RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|23493751|dbj|BAC18720.1| putative ribosome recycling factor [Corynebacterium efficiens YS-314] gi|259164911|gb|EEW49465.1| ribosome recycling factor [Corynebacterium efficiens YS-314] Length = 185 Score = 154 bits (390), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 70/175 (40%), Positives = 116/175 (66%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 ++RM +T+ ++D++T+RTGR +P+M + V E YG P+ Q+++++V EPRML++ Sbjct: 10 EERMSNTVEHTREDLITIRTGRANPAMFNGVLAEYYGVPTPITQMSSISVPEPRMLIIKP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 ++ + +E I S+LG+NP +GQVLR+ +P+ TEERR +VK+A E KI++R Sbjct: 70 YEMSSMGVIENAIRNSDLGVNPTNDGQVLRVTIPQLTEERRRDMVKIAKGKGEDGKIAIR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 N+RR GM+ LKK +K G+ ED VA+ E ++ KIT ++ +D K+ E+M Sbjct: 130 NVRRKGMEQLKKLQKDGEFGEDEVAAAEKELDKITAHYVEQVDEIVARKEAELME 184 >gi|83721123|ref|YP_442554.1| ribosome recycling factor [Burkholderia thailandensis E264] gi|167581481|ref|ZP_02374355.1| ribosome recycling factor [Burkholderia thailandensis TXDOH] gi|167619591|ref|ZP_02388222.1| ribosome recycling factor [Burkholderia thailandensis Bt4] gi|257138763|ref|ZP_05587025.1| ribosome recycling factor [Burkholderia thailandensis E264] gi|123536967|sp|Q2SWZ5|RRF_BURTA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|83654948|gb|ABC39011.1| ribosome recycling factor [Burkholderia thailandensis E264] Length = 186 Score = 154 bits (390), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 76/177 (42%), Positives = 113/177 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++ +M +I K D+ +RTGR +LD V+V+ YGS VP++QVAN+T+++ R + Sbjct: 8 KGVEQKMQRSIEAFKNDLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVANLTLVDARTIG 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K MVA VE+ I E++LGLNP G ++R+P+P TEERR L KV E +K+ Sbjct: 68 VQPWEKNMVAKVEKAIREADLGLNPATAGDLIRVPMPALTEERRRELTKVVKGEGETAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +VRN+RRD + LKK K + SED +D+QK+TD + ID + K+ EIM Sbjct: 128 AVRNLRRDANEQLKKLVKDKEISEDDERRAGDDVQKLTDKHVAEIDKLVQSKEAEIM 184 >gi|302389812|ref|YP_003825633.1| ribosome recycling factor [Thermosediminibacter oceani DSM 16646] gi|302200440|gb|ADL08010.1| ribosome recycling factor [Thermosediminibacter oceani DSM 16646] Length = 185 Score = 154 bits (390), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 78/174 (44%), Positives = 118/174 (67%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 +RM + LK ++ +R GR S ++L+ V V+ YG P+NQVA V+V EPRM+++ W Sbjct: 11 ERMKKVLGNLKSELAAIRAGRASTALLEKVFVDYYGVPTPVNQVATVSVPEPRMILIQPW 70 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 D +M++++E+ I +S+LGL P +G+V+R+ +PE T ERR LVK+A AE +K+ VRN Sbjct: 71 DVKMLSAIEKAILKSDLGLTPTSDGKVIRLILPELTSERRKELVKMAKKKAEDAKVLVRN 130 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 IRRD + +KK K+G+ SED + +IQK+TD+ I+ ID F K+KEIM Sbjct: 131 IRRDANELVKKMEKNGEISEDDSKRSQEEIQKLTDNYIEEIDKAFTNKEKEIME 184 >gi|257467196|ref|ZP_05631507.1| ribosome recycling factor (RRF) [Fusobacterium gonidiaformans ATCC 25563] gi|315918326|ref|ZP_07914566.1| ribosome recycling factor [Fusobacterium gonidiaformans ATCC 25563] gi|313692201|gb|EFS29036.1| ribosome recycling factor [Fusobacterium gonidiaformans ATCC 25563] Length = 189 Score = 154 bits (390), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 79/180 (43%), Positives = 119/180 (66%), Gaps = 4/180 (2%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q +++M TI K+ ++R GR S +MLD +KVE YGS +PLNQVA V+ E R+L Sbjct: 8 IQECQNKMQKTIEATKEKFTSIRAGRASVAMLDNIKVEQYGSDMPLNQVATVSAPEARLL 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK M+ +E+ I +NLG+NP +G+V+R+ +PE T +RR VK+A AE K Sbjct: 68 VIDPWDKTMILKIEKAILAANLGMNPNNDGRVVRLVMPELTADRRKEYVKLAKKEAENGK 127 Query: 127 ISVRNIRRD---GMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 I+VRNIR+D + ++K ++SG SED + E ++Q +TD TIK++D +K+KEI Sbjct: 128 IAVRNIRKDMNTALKKIEKDKESG-MSEDELKRFEAEVQTLTDKTIKDLDDLLAKKEKEI 186 >gi|90961538|ref|YP_535454.1| ribosome recycling factor [Lactobacillus salivarius UCC118] gi|122449175|sp|Q1WUG4|RRF_LACS1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|90820732|gb|ABD99371.1| Ribosome Recycling Factor, RRF [Lactobacillus salivarius UCC118] Length = 187 Score = 154 bits (390), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 74/179 (41%), Positives = 121/179 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +++M L++++ +R GR + S+L+ + VE YG+ PLNQ+A ++V E R+L Sbjct: 8 IKEAQEKMTKAEDSLRRELGNIRAGRANASLLNRINVEYYGAPTPLNQMAQISVPEARVL 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + ++E I S+LG+ P+ +G +R+ +P+ TEERR L K A +E K Sbjct: 68 LVTPYDKTSLKNIEHAIMASDLGIAPMNDGTAIRLVIPQLTEERRKELAKQVKAVSETGK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRNIRRD MD LKK++K+G +ED + LEN QK+TD +IKNID E+K+KE++ Sbjct: 128 VAVRNIRRDMMDALKKAQKNGDLTEDDLRDLENQAQKVTDESIKNIDKITEDKEKEVLE 186 >gi|88812380|ref|ZP_01127630.1| Ribosome recycling factor [Nitrococcus mobilis Nb-231] gi|88790387|gb|EAR21504.1| Ribosome recycling factor [Nitrococcus mobilis Nb-231] Length = 185 Score = 154 bits (390), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 79/172 (45%), Positives = 110/172 (63%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RMG +I L + +RTGR S+LD + V YG+ +PLNQVA+VTV +PR L V+ W+ Sbjct: 12 RMGKSIEALNHEFHKIRTGRAHTSLLDHITVTYYGAKMPLNQVASVTVSDPRTLSVTPWE 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K M+ VE+ I ES+LGL P G V+RIP+P TEERR L++V E+++I++RN+ Sbjct: 72 KGMIPVVEKAILESDLGLTPNTAGGVIRIPLPPLTEERRRELIRVVKHETEQARIAIRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD LK K + +ED E+DIQK+TD I +DS K+KE+M Sbjct: 132 RRDANSALKARLKDKEITEDDEKRAEDDIQKLTDKHISEVDSLLVAKEKELM 183 >gi|322831591|ref|YP_004211618.1| ribosome recycling factor [Rahnella sp. Y9602] gi|321166792|gb|ADW72491.1| ribosome recycling factor [Rahnella sp. Y9602] Length = 185 Score = 154 bits (389), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 80/174 (45%), Positives = 108/174 (62%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM + K + +RTGR SP +LD + VE YGS PL Q+A VTV + R L +SV+D Sbjct: 12 RMEKCVESFKTHISKIRTGRASPGILDGIMVEYYGSATPLRQLAQVTVEDSRTLAISVFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + + A+VE+ I S+LGLNP G +R+P+P TEERR L+KV AE+ ++SVRN+ Sbjct: 72 RSISAAVEKAIMTSDLGLNPSSAGATIRVPLPALTEERRKDLIKVVRGEAEQGRVSVRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD D K K + SED ++DIQK+TD IK ID EK+ E+M F Sbjct: 132 RRDANDKTKALLKDKEISEDEDRRSQDDIQKLTDIFIKKIDVALSEKEAELMEF 185 >gi|118602299|ref|YP_903514.1| ribosome recycling factor [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|166231221|sp|A1AVT6|RRF_RUTMC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|118567238|gb|ABL02043.1| ribosome recycling factor [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 185 Score = 154 bits (389), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 78/179 (43%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ + RM +++ LK +R R S+L+ + V+ YGS VPL+QVAN++V + R Sbjct: 7 QDAQSRMNKSVASLKNAFSKIRANRAHSSLLEQIHVDYYGSMVPLSQVANISVEDSRTFK 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 VS W+K+MVA +E+ I SNLGLNP GQ++RIP+P T+ERR LVK+ AE++K+ Sbjct: 67 VSPWEKDMVAVIEKAIMTSNLGLNPQTMGQIMRIPLPPLTQERRGELVKIVKDEAEQAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD K+ K + S D EN IQKITD+ IK I++ F EK+ ++ Sbjct: 127 AIRNIRRDANSDFKELLKEKEISRDGARKAENSIQKITDTYIKEIEAKFCEKENSLLEI 185 >gi|26988326|ref|NP_743751.1| ribosome recycling factor [Pseudomonas putida KT2440] gi|148549389|ref|YP_001269491.1| ribosome recycling factor [Pseudomonas putida F1] gi|34924941|sp|Q88MH7|RRF_PSEPK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166231212|sp|A5W847|RRF_PSEP1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|24983074|gb|AAN67215.1|AE016348_7 ribosome recycling factor [Pseudomonas putida KT2440] gi|148513447|gb|ABQ80307.1| ribosome recycling factor [Pseudomonas putida F1] gi|313500238|gb|ADR61604.1| Frr [Pseudomonas putida BIRD-1] Length = 185 Score = 154 bits (389), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 76/177 (42%), Positives = 115/177 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RMG +I L +++ +RTGR PS+LD VKV A+GS +PLNQVA +TV + R L Sbjct: 7 KDAQERMGKSIEALSRNLAAIRTGRAHPSILDSVKVTAWGSEMPLNQVAAITVEDARTLK 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + DK + A++E+ I S+LGLNP G +R+P+P TEE R K A AE +K+ Sbjct: 67 IVAHDKNLSAAIEKAILTSDLGLNPSSAGTTIRVPMPALTEETRKGYTKQASGVAEDAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +VRN+RRD + LKK K + SED ++IQK+TD + +D+ F+ K+K++M Sbjct: 127 AVRNVRRDALADLKKLTKDKEISEDEERRAADEIQKLTDKFVAEVDAAFKAKEKDLM 183 >gi|315648104|ref|ZP_07901205.1| ribosome recycling factor [Paenibacillus vortex V453] gi|315276750|gb|EFU40093.1| ribosome recycling factor [Paenibacillus vortex V453] Length = 184 Score = 154 bits (389), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 77/178 (43%), Positives = 114/178 (64%), Gaps = 1/178 (0%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N ++RM I LK+D+ TLR GR +P++LD + VE YG+ PLNQ+AN++ + R L+ Sbjct: 7 KNAEERMEKAILSLKRDLATLRAGRAAPALLDRITVEYYGAPTPLNQLANISTPDSRTLM 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + WDK +A +E+ I +S++GL P +G +R+ VP TEERR LVK+ + E++K+ Sbjct: 67 IQPWDKSSLADIEKAIMKSDIGLTPANDGNQIRLVVPALTEERRTELVKMTKKFGEEAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++RNIRRD D +KK K+ SED + DIQK TD I +D K+KEIM Sbjct: 127 AIRNIRRDANDDIKKLEKTD-ISEDESRRHQEDIQKATDKFIAEVDKVLVAKEKEIME 183 >gi|227824516|ref|ZP_03989348.1| ribosome recycling factor [Acidaminococcus sp. D21] gi|226905015|gb|EEH90933.1| ribosome recycling factor [Acidaminococcus sp. D21] Length = 187 Score = 154 bits (389), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 76/174 (43%), Positives = 113/174 (64%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M + L ++ +RTGR +PS+LD VKV+ YG+ P+NQ+ANV+V EPRM+V+ WD Sbjct: 14 KMTSALKALHTELAAIRTGRATPSLLDQVKVDYYGTATPVNQLANVSVPEPRMIVIQPWD 73 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K ++ +E+ I S+LGLNP +G V+R+ +P TEERR LVKV H E ++++VRNI Sbjct: 74 KSLMKEIEKAIMTSDLGLNPNNDGTVIRLSLPILTEERRKELVKVVHKKGESARVAVRNI 133 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RR+ D +KK K + +ED + QK+TD +K ID +K+KE+M Sbjct: 134 RREYNDAVKKLLKGKEITEDDSKDAMDASQKLTDQYMKQIDDILAKKEKEVMSI 187 >gi|218888003|ref|YP_002437324.1| ribosome recycling factor [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|226703259|sp|B8DSA1|RRF_DESVM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|66766332|dbj|BAD99030.1| ribosome recycling factor [Desulfovibrio vulgaris] gi|218758957|gb|ACL09856.1| ribosome recycling factor [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 186 Score = 154 bits (389), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 77/180 (42%), Positives = 116/180 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + ++RM + L ++ LRTGR S S++D +KV+ YG+ P++Q+A+V+V + R L Sbjct: 7 LLDAEERMEKALGSLDREFAKLRTGRASTSLVDNIKVDYYGTPTPISQLASVSVPDSRTL 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WD+ VE+ I +S+LGLNP+ +G+++RI +P TEERR LVKVA Y E++K Sbjct: 67 TIQPWDRSAFQLVEKAIMKSDLGLNPVNDGKIIRISIPPLTEERRKDLVKVARKYTEEAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RRD D LKK K + SED V +D+QK+TD + D K+KEIM Sbjct: 127 VAVRNVRRDANDALKKLEKGKEISEDDVRKSTDDVQKLTDRFVAKSDEKCTAKEKEIMEL 186 >gi|313886710|ref|ZP_07820420.1| ribosome recycling factor [Porphyromonas asaccharolytica PR426713P-I] gi|332300074|ref|YP_004441995.1| Ribosome-recycling factor [Porphyromonas asaccharolytica DSM 20707] gi|312923872|gb|EFR34671.1| ribosome recycling factor [Porphyromonas asaccharolytica PR426713P-I] gi|332177137|gb|AEE12827.1| Ribosome-recycling factor [Porphyromonas asaccharolytica DSM 20707] Length = 186 Score = 154 bits (389), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 75/171 (43%), Positives = 111/171 (64%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M + FL+ + +R G+ +P +LD + VEAYG+ +PLNQVA VTV + R L ++ WDK Sbjct: 14 MLKAVEFLQDKLDRIRAGKANPVLLDDITVEAYGAPMPLNQVATVTVPDARTLAITPWDK 73 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 +++ +E+GI +SNLG+ P G+++RI +P TEERR LVK A +E++KIS+RN R Sbjct: 74 KLIKDIEKGILDSNLGITPTNNGEMIRIAMPPLTEERRKELVKQCKAESEEAKISIRNAR 133 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RD +D KK+ K+ ED + END QK+ D I ++ K+KEIM Sbjct: 134 RDAIDAAKKAVKAEDLPEDTIKQTENDAQKLHDKYIGRVEEALAAKEKEIM 184 >gi|254448744|ref|ZP_05062201.1| ribosome recycling factor [gamma proteobacterium HTCC5015] gi|198261585|gb|EDY85873.1| ribosome recycling factor [gamma proteobacterium HTCC5015] Length = 185 Score = 154 bits (389), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 77/181 (42%), Positives = 114/181 (62%), Gaps = 1/181 (0%) Query: 6 DLQ-NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D+Q + + RM ++ L+ D+ +RTGR PS+L+ ++VE YG+ P+ QVAN+TV + R Sbjct: 4 DIQKDAESRMKKSLESLQGDLTRIRTGRAHPSLLEHIQVEYYGAKTPIKQVANITVEDAR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 LVV+ W+K+MV ++E+ I ES+LGLNP G V+RIP+P TEERR VK+ E+ Sbjct: 64 TLVVTPWEKDMVQTIEKAIMESDLGLNPTSAGTVMRIPLPPLTEERRKEFVKLVRQEGEQ 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 K+++RNIRRD K K + SED E IQK+TD + +D K++E+M Sbjct: 124 GKVAIRNIRRDANGDFKDLLKEKEISEDEQRRAEEVIQKLTDKYVAEVDGLLAAKEQELM 183 Query: 185 H 185 Sbjct: 184 E 184 >gi|71903032|ref|YP_279835.1| ribosome recycling factor [Streptococcus pyogenes MGAS6180] gi|123640384|sp|Q48UX6|RRF_STRPM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|71802127|gb|AAX71480.1| ribosome recycling factor [Streptococcus pyogenes MGAS6180] Length = 185 Score = 154 bits (389), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 73/178 (41%), Positives = 116/178 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+R + L ++ ++R GR + S+LD ++V+ YG+ PLNQ+A++TV E R+L Sbjct: 6 IETAKERFAQSHQSLSREYASIRAGRANASLLDRIQVDYYGAPTPLNQLASITVPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +DK + +ER ++ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LISPFDKSSIKDIERALNASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 I++RNIRRD MD KK K+ + +ED + +LE DIQK+TD IK ID EK+KE++ Sbjct: 126 IAIRNIRRDAMDDAKKQEKAKEITEDELKTLEKDIQKVTDDAIKEIDRMTAEKEKELL 183 >gi|254252062|ref|ZP_04945380.1| Ribosome recycling factor [Burkholderia dolosa AUO158] gi|124894671|gb|EAY68551.1| Ribosome recycling factor [Burkholderia dolosa AUO158] Length = 186 Score = 154 bits (389), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 76/177 (42%), Positives = 114/177 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++ +M +I K D+ +RTGR +LD V+V+ YGS VP++QVAN+T+++ R + Sbjct: 8 KGVEQKMQRSIEAFKNDLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVANLTLVDARTIG 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K MVA VE+ I E++LGLNP G V+R+P+P TEERR L KV + E +K+ Sbjct: 68 VQPWEKNMVAKVEKAIREADLGLNPATTGDVIRVPMPALTEERRRELTKVVKSEGETAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++RN+RRD + LKK K + SED +D+QK+TD + ID + K+ EIM Sbjct: 128 AIRNLRRDANEALKKLVKDKEISEDDERRAGDDVQKLTDKHVAEIDKLVQTKEAEIM 184 >gi|116618296|ref|YP_818667.1| ribosome recycling factor [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|227431621|ref|ZP_03913657.1| ribosome recycling factor [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|122271504|sp|Q03WX8|RRF_LEUMM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|116097143|gb|ABJ62294.1| ribosome recycling factor [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|227352613|gb|EEJ42803.1| ribosome recycling factor [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 181 Score = 154 bits (389), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 78/181 (43%), Positives = 119/181 (65%), Gaps = 3/181 (1%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 DL N K+RM L++++ +RTGR +P++L+ V+VE YG+ PLNQVA+++V E Sbjct: 2 TFDLTNAKERMKGAQEALQRELANIRTGRANPNILNRVEVEYYGAMTPLNQVASISVPEA 61 Query: 64 RMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAE 123 R+L+++ +DK + ++ I+ S+LGLNP +G ++R+ +P+ TEERR L K A AE Sbjct: 62 RILLITPFDKSALEAIVHAINVSDLGLNPASDGNIVRLAIPQMTEERRKELAKEVKAEAE 121 Query: 124 KSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 K+K+SVRN+RRD MD +KK + ED E+ QK+TD IK ID EK+KE+ Sbjct: 122 KAKVSVRNVRRDIMDDIKKDK---DMPEDDARKAEDQTQKLTDENIKAIDEIAAEKEKEL 178 Query: 184 M 184 + Sbjct: 179 L 179 >gi|261338830|ref|ZP_05966688.1| hypothetical protein ENTCAN_05025 [Enterobacter cancerogenus ATCC 35316] gi|288318653|gb|EFC57591.1| ribosome recycling factor [Enterobacter cancerogenus ATCC 35316] Length = 185 Score = 154 bits (389), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 76/174 (43%), Positives = 112/174 (64%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM + K + +RTGR SPS+LD + VE YG+ PL Q+A+VTV + R L ++V+D Sbjct: 12 RMDKCVEAFKNQISKIRTGRASPSLLDGIIVEYYGTPTPLRQLASVTVEDTRTLKINVFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + M ++E+ I S+LGLNP G +R+P+P TEERR L+KV AE+ ++SVRN+ Sbjct: 72 RSMSPAIEKAIMASDLGLNPSSAGADIRVPLPALTEERRKDLIKVVRGEAEQGRVSVRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD D +K K + SED ++D+QK+TD+ IK ID+ +K+ E+M F Sbjct: 132 RRDANDKVKALLKEKEISEDDDRRSQDDVQKMTDAAIKKIDAALADKEAELMQF 185 >gi|222100166|ref|YP_002534734.1| Ribosome recycling factor [Thermotoga neapolitana DSM 4359] gi|254809538|sp|B9K8T5|RRF_THENN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|221572556|gb|ACM23368.1| Ribosome recycling factor [Thermotoga neapolitana DSM 4359] Length = 185 Score = 154 bits (389), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 74/180 (41%), Positives = 120/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K++M T+ ++ ++ +RTG+ SP++L+ +KV+ YG P+NQ+A ++V E R L Sbjct: 6 IKEAKEKMKKTLEKIEDELKKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISVSEERTL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WD+ +++ +E+ I+ S+LGLNP+ +G V+R+ P T E+R VK A E+ K Sbjct: 66 VIKPWDRSVLSLIEKAINASDLGLNPVNDGNVIRLVFPTPTTEQREKWVKKAKEIVEEGK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIRR+ M +K+ +K G ED LEN++QK+TD I+ +D FE KKKEIM F Sbjct: 126 IAIRNIRREIMKKIKEDQKEGNIPEDDARRLENEVQKLTDEFIEKLDEVFEIKKKEIMEF 185 >gi|260772225|ref|ZP_05881141.1| ribosome recycling factor [Vibrio metschnikovii CIP 69.14] gi|260611364|gb|EEX36567.1| ribosome recycling factor [Vibrio metschnikovii CIP 69.14] Length = 185 Score = 154 bits (389), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 76/179 (42%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK ++ +RTGR PS+L + VE YG+ PL+Q+ANV + R L Sbjct: 7 KDAQERMDKSVEALKNNLSKIRTGRAHPSLLSGLSVEYYGASTPLSQIANVIAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DKE+ VE+ I S+LGLNP+ G V+R+P+P TEERR LVK+ AE ++ Sbjct: 67 ITVFDKELTPKVEKAILMSDLGLNPMSAGTVIRVPLPPLTEERRRDLVKIVRGEAEGGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD + LK K + SED +++IQK+TD+ +K ID K+KE+M Sbjct: 127 AVRNIRRDANNDLKALLKDKEISEDEERKAQDEIQKLTDAAVKKIDDILAVKEKELMEV 185 >gi|313891269|ref|ZP_07824887.1| ribosome recycling factor [Streptococcus pseudoporcinus SPIN 20026] gi|313120336|gb|EFR43457.1| ribosome recycling factor [Streptococcus pseudoporcinus SPIN 20026] Length = 185 Score = 154 bits (389), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 76/183 (41%), Positives = 117/183 (63%), Gaps = 2/183 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 N +ID K R + L ++ ++R GR + S+LD ++V+ YG+ PLNQ++++TV Sbjct: 3 NAIID--KAKQRFEQSFQSLSREYASIRAGRANASLLDRIQVDYYGAPTPLNQLSSITVP 60 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 E R+L++S +DK + +ER I+ S+LG+ P +G V+R+ +P TEE R L K Sbjct: 61 EARVLLISPFDKNSIKDIERAINASDLGITPANDGSVIRLVIPALTEETRKNLAKEVKKV 120 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 E K+++RNIRRD MD KK K + SED + +LE DIQK+TD IK+ID+ EK+K Sbjct: 121 GENQKVAIRNIRRDAMDEAKKQEKDKEISEDELKTLEKDIQKVTDDAIKHIDAMTAEKEK 180 Query: 182 EIM 184 E++ Sbjct: 181 ELL 183 >gi|222151092|ref|YP_002560246.1| ribosome recycling factor [Macrococcus caseolyticus JCSC5402] gi|254809518|sp|B9EBD9|RRF_MACCJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|222120215|dbj|BAH17550.1| ribosome recycling factor [Macrococcus caseolyticus JCSC5402] Length = 185 Score = 154 bits (388), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 77/179 (43%), Positives = 114/179 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + +K +M +I L++D +R G + ++LD V V YG+ P+ Q+A ++V EPRML Sbjct: 6 MNELKSKMEKSIESLQRDFAAIRAGHANANLLDRVSVVYYGAETPVQQLAGISVPEPRML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + + + I+ +NLG+NP +G V+RI VP TEERR LVK A AE SK Sbjct: 66 LVTPYDKTSIDDILKAINMANLGVNPTSDGNVIRITVPALTEERRKELVKEAKKEAENSK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 I++RNIRRD D LKK+ K+G +ED + S +D+Q TD IK ID K+K+I+ Sbjct: 126 IAIRNIRRDANDALKKAEKAGDITEDDLKSFSDDVQAETDKFIKKIDELTASKEKDILE 184 >gi|325849053|ref|ZP_08170545.1| ribosome recycling factor [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480298|gb|EGC83361.1| ribosome recycling factor [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 185 Score = 154 bits (388), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 72/158 (45%), Positives = 103/158 (65%) Query: 28 LRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESN 87 +R GR + S+LD + YGS P+NQ A ++ EPR+LV+ WDK + +E+ I++S+ Sbjct: 27 IRAGRANDSILDGLTFSYYGSQTPINQAATISTPEPRLLVIKPWDKSNIKEIEKAINKSD 86 Query: 88 LGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSG 147 +G+NP +G+V+R+P P TEERR L K + Y+E SKI +RNIRRD +D KK KS Sbjct: 87 IGINPQNDGEVIRLPFPALTEERRKDLTKQVNDYSEDSKIQIRNIRRDSLDVAKKGEKSA 146 Query: 148 KASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +ED + S+E DIQKIT I NI+ E K KE++ Sbjct: 147 DLTEDDLFSIEEDIQKITKKYIDNIEKIAENKNKELLE 184 >gi|223044216|ref|ZP_03614253.1| ribosome recycling factor [Staphylococcus capitis SK14] gi|222442366|gb|EEE48474.1| ribosome recycling factor [Staphylococcus capitis SK14] Length = 184 Score = 154 bits (388), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 76/180 (42%), Positives = 119/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +++ K RM +I L +++ + GR + ++L+ V V+ YG+ P+ Q+A++ V E R+L Sbjct: 5 IKDTKARMQKSIDNLSRELANISAGRANSNLLNGVTVDYYGAPTPVQQLASINVPEARLL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+S +DK V +E+ I +NLG+NP +G+V+RI VP TEERR LVK E +K Sbjct: 65 VISPYDKTSVDDIEKAIIAANLGVNPTSDGEVIRISVPALTEERRKELVKNVKKIGEDAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+RNIRRD DHLKK K+G +ED + S +D+QK TD++IK ID ++K+++IM Sbjct: 125 VSIRNIRRDINDHLKKEEKNGDITEDDLRSQTDDVQKATDNSIKEIDQLVDDKEQDIMSV 184 >gi|167586858|ref|ZP_02379246.1| ribosome recycling factor [Burkholderia ubonensis Bu] Length = 186 Score = 154 bits (388), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 75/177 (42%), Positives = 114/177 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++ +M +I K D+ +RTGR +LD V+V+ YGS VP++QVAN+T+++ R + Sbjct: 8 KGVEQKMQRSIEAFKNDLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVANLTLVDARTIG 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K MVA VE+ I E++LGLNP G ++R+P+P TEERR L KV + E +K+ Sbjct: 68 VQPWEKNMVAKVEKAIREADLGLNPATSGDLIRVPMPPLTEERRRELTKVVKSEGETAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++RN+RRD + LKK K + SED +D+QK+TD + ID + K+ EIM Sbjct: 128 AIRNLRRDANEQLKKLVKDKEISEDDERRAGDDVQKLTDKHVTEIDKLVQSKEAEIM 184 >gi|225026987|ref|ZP_03716179.1| hypothetical protein EUBHAL_01243 [Eubacterium hallii DSM 3353] gi|224955672|gb|EEG36881.1| hypothetical protein EUBHAL_01243 [Eubacterium hallii DSM 3353] Length = 181 Score = 154 bits (388), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 70/178 (39%), Positives = 119/178 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +D+M +I L+++ ++R GR +P +LD +KV+ YG+ PL QV N++V EPR++ Sbjct: 2 IKKFEDKMQKSIESLEREYNSIRAGRANPHVLDKIKVDYYGTPTPLQQVGNISVPEPRII 61 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + W+ ++ ++E+ I +S++G+NP +G+V+R+ PE TEERR LVK E +K Sbjct: 62 TIQPWETSLLKAIEKEIMQSDIGINPTNDGKVIRLVFPELTEERRKELVKDVKKKGEAAK 121 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++RNIRRD D LKK+ K+ + +ED + ++ +QK TD IK ID ++K KEI+ Sbjct: 122 VAIRNIRRDANDSLKKANKNSEITEDELKDQQDKVQKATDKYIKTIDGMIDKKSKEIL 179 >gi|154484746|ref|ZP_02027194.1| hypothetical protein EUBVEN_02463 [Eubacterium ventriosum ATCC 27560] gi|149734594|gb|EDM50511.1| hypothetical protein EUBVEN_02463 [Eubacterium ventriosum ATCC 27560] Length = 184 Score = 154 bits (388), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 75/174 (43%), Positives = 112/174 (64%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 +D+M +++ L ++ T+R GR +P +LD +K++ YG+ PL QV NV+V E RM+ + Sbjct: 9 EDKMEKSLANLGEEYATIRAGRANPHILDKIKIDYYGTPTPLQQVGNVSVPEARMICIQP 68 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 WD ++ +E I+ S++G+NP +G+V+R+ PE TE+RR LVK E +KI++R Sbjct: 69 WDASILKDIEHAINMSDVGINPTNDGKVIRLVFPELTEDRRKELVKDVKKKGENAKIAIR 128 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 NIRRD +D +KK K SED V ++D+QK TD IK ID EEK EIM Sbjct: 129 NIRRDAIDAIKKKGKEDGISEDEVKGYQDDVQKKTDEYIKKIDVAIEEKSNEIM 182 >gi|78066795|ref|YP_369564.1| ribosome recycling factor [Burkholderia sp. 383] gi|123568180|sp|Q39F46|RRF_BURS3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|77967540|gb|ABB08920.1| ribosome recycling factor [Burkholderia sp. 383] Length = 186 Score = 154 bits (388), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 76/177 (42%), Positives = 113/177 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++ +M +I K D+ +RTGR MLD V+V+ YGS VP++QVAN+T+++ R + Sbjct: 8 KGVEQKMQRSIDAFKSDLAKIRTGRAHTGMLDHVQVDYYGSMVPISQVANMTLVDARTIG 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K MVA VE+ I E++LGLNP G +R+P+P TEERR L KV + E +K+ Sbjct: 68 VQPWEKPMVAKVEKAIREADLGLNPATSGDQIRVPMPALTEERRRELTKVVKSEGETAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++RN+RRD + LKK K + SED +D+QK+TD + ID + K+ EIM Sbjct: 128 AIRNLRRDANEALKKLVKDKEISEDDERRASDDVQKLTDKHVAEIDKLVQSKEAEIM 184 >gi|303240826|ref|ZP_07327339.1| ribosome recycling factor [Acetivibrio cellulolyticus CD2] gi|302591714|gb|EFL61449.1| ribosome recycling factor [Acetivibrio cellulolyticus CD2] Length = 185 Score = 154 bits (388), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 71/180 (39%), Positives = 122/180 (67%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 + ++I+++M TI+ LK ++ +R GR +P++LD + V+ YG+ P+NQ+A+V+V E R+ Sbjct: 5 EYKSIEEKMKKTINVLKDELTGVRAGRANPAILDKLTVDYYGTPTPINQIASVSVPEGRV 64 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 +++ W+ +M+ +E+ I +S++G+NP +G+V+R+ P TEERR L KV Y E + Sbjct: 65 IMIQPWEAKMIKEIEKEIQKSDIGINPNNDGKVIRLVFPMLTEERRKELTKVVKKYGEDA 124 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 K+++R IRRDG++H+K +K G+ +ED + + E DIQ +TD I ID E K EI+ Sbjct: 125 KVAIRAIRRDGIEHMKTLKKDGELTEDDLKTAEKDIQNMTDKYIAEIDKVVELKDAEILE 184 >gi|268610455|ref|ZP_06144182.1| ribosome recycling factor [Ruminococcus flavefaciens FD-1] Length = 184 Score = 154 bits (388), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 75/178 (42%), Positives = 116/178 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + K++M I+ L + ++R GR +PS+LD V V+ YG+ P+NQ+A V+V E R L Sbjct: 5 INQAKEKMTKCINSLGNEFASIRAGRANPSVLDKVTVDYYGAPTPINQLAAVSVSEGRTL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+S W+K + ++E+ I S++G+NP +G V+R+ P+ TE+RR L K EK+K Sbjct: 65 VISPWEKPQLKAIEKAIQASDIGINPTNDGNVIRLTFPQLTEDRRKELAKEIKGLGEKAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++VRN RRD M+ LKK +K+ + +ED +A E +QKITD I +ID +K+KEIM Sbjct: 125 VTVRNARRDTMEKLKKMKKNSEITEDELADGEKKVQKITDGFIDDIDKAVADKEKEIM 182 >gi|197286128|ref|YP_002152000.1| ribosome recycling factor [Proteus mirabilis HI4320] gi|227357247|ref|ZP_03841604.1| ribosome recycling factor [Proteus mirabilis ATCC 29906] gi|238690100|sp|B4F2D0|RRF_PROMH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|194683615|emb|CAR44513.1| ribosome recycling factor [Proteus mirabilis HI4320] gi|227162510|gb|EEI47499.1| ribosome recycling factor [Proteus mirabilis ATCC 29906] Length = 185 Score = 154 bits (388), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 77/179 (43%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK + +RTGR SP++LD + VE YG+ PLNQVANV + R L Sbjct: 7 KDAQERMDKSVEALKSQINKVRTGRASPNLLDGIVVEYYGAPTPLNQVANVVAEDGRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ + +VE+ I S+LGLNP G ++R+P+P TEERR L+KV AE+ ++ Sbjct: 67 ITVFDRTLAPAVEKAIMASDLGLNPSSAGAIIRVPLPPLTEERRKDLIKVVRGDAEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RNIRRD D +K K + SED +++IQK+TD IK ID K+ E+M F Sbjct: 127 SIRNIRRDANDKIKALLKDKEISEDDERRSQDEIQKLTDMFIKKIDEALTLKEAELMEF 185 >gi|251797408|ref|YP_003012139.1| ribosome recycling factor [Paenibacillus sp. JDR-2] gi|247545034|gb|ACT02053.1| ribosome recycling factor [Paenibacillus sp. JDR-2] Length = 184 Score = 154 bits (388), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 80/185 (43%), Positives = 116/185 (62%), Gaps = 2/185 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M Q I ++ ++RM I LK+D+ TLR GR +P++LD V+VE YG+ P+ Q+AN+ V Sbjct: 1 MPQAIK-KSAEERMEKAIGALKRDLATLRAGRATPALLDRVQVEYYGAPTPVAQLANINV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R L + WDK +A++E+ I +S+LGL P +G +RI +P TEERR LVK Sbjct: 60 PDSRTLFIQPWDKSSIAAIEKAIMKSDLGLTPSNDGSAIRITLPPLTEERRSELVKTTKK 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 + E++K+++RNIRRD D +KK K+ SED + DIQK TD I +D K+ Sbjct: 120 FGEEAKVAIRNIRRDANDDIKKLEKTT-ISEDESRRHQEDIQKATDRFIAEVDKVLVAKE 178 Query: 181 KEIMH 185 KEIM Sbjct: 179 KEIME 183 >gi|206578649|ref|YP_002240340.1| ribosome recycling factor [Klebsiella pneumoniae 342] gi|238893168|ref|YP_002917902.1| ribosome recycling factor [Klebsiella pneumoniae NTUH-K2044] gi|262044757|ref|ZP_06017804.1| ribosome recycling factor [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288937046|ref|YP_003441105.1| ribosome recycling factor [Klebsiella variicola At-22] gi|290512467|ref|ZP_06551833.1| ribosome recycling factor [Klebsiella sp. 1_1_55] gi|330001650|ref|ZP_08304076.1| ribosome recycling factor [Klebsiella sp. MS 92-3] gi|226749933|sp|B5Y1J9|RRF_KLEP3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|206567707|gb|ACI09483.1| ribosome recycling factor [Klebsiella pneumoniae 342] gi|238545484|dbj|BAH61835.1| ribosome releasing factor [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259037907|gb|EEW39131.1| ribosome recycling factor [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288891755|gb|ADC60073.1| ribosome recycling factor [Klebsiella variicola At-22] gi|289774808|gb|EFD82810.1| ribosome recycling factor [Klebsiella sp. 1_1_55] gi|328537592|gb|EGF63812.1| ribosome recycling factor [Klebsiella sp. MS 92-3] Length = 185 Score = 154 bits (388), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 75/174 (43%), Positives = 113/174 (64%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM + K + +RTGR SPS+LD + VE YG+ PL Q+A+VTV + R L ++V+D Sbjct: 12 RMEKCVEAFKNQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + M A+VE+ I S+LGLNP G +R+P+P TEERR L K+ AE+++++VRN+ Sbjct: 72 RSMSAAVEKAIMASDLGLNPSSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD D +K K + SED ++D+QK+TD+ IK +D+ +K+ E+M F Sbjct: 132 RRDANDKVKALLKEKEISEDDDRRSQDDVQKMTDAAIKKVDAALADKEAELMQF 185 >gi|145295926|ref|YP_001138747.1| ribosome recycling factor [Corynebacterium glutamicum R] gi|166230782|sp|A4QF29|RRF_CORGB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|140845846|dbj|BAF54845.1| hypothetical protein [Corynebacterium glutamicum R] Length = 185 Score = 154 bits (388), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 72/175 (41%), Positives = 113/175 (64%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 ++RM T+ ++D+ T+RTGR +P+M + V E YG P+ Q+++++V EPRML++ Sbjct: 10 EERMTATVEHTREDLTTIRTGRANPAMFNGVMAEYYGVPTPITQMSSISVPEPRMLLIKP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 ++ + +E I S+LG+NP +GQVLR+ +P+ TEERR +VK+A E KI++R Sbjct: 70 YEMSSMQVIENAIRNSDLGVNPTNDGQVLRVTIPQLTEERRKDMVKLAKGKGEDGKIAIR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 NIRR GMD LKK +K G A ED V + E ++ K+T + +D K+KE+M Sbjct: 130 NIRRKGMDQLKKLQKDGDAGEDEVQAAEKELDKVTAGFVAQVDEVVARKEKELME 184 >gi|90408931|ref|ZP_01217066.1| ribosome releasing factor [Psychromonas sp. CNPT3] gi|90309959|gb|EAS38109.1| ribosome releasing factor [Psychromonas sp. CNPT3] Length = 185 Score = 154 bits (388), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 78/173 (45%), Positives = 110/173 (63%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM T+ K + +RTGR PS+LD + V YGS+ PL QV+N++ + R L V+V+D Sbjct: 12 RMSKTVESFKSQLAKVRTGRAHPSLLDGIMVPYYGSNTPLRQVSNISTEDSRTLTVTVFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 ++A+VE+ I SNLGLNP+ G V+RIP+P TEERR L+KV AE S+I++RNI Sbjct: 72 ATLIAAVEKAIMGSNLGLNPMSAGTVIRIPLPPLTEERRKDLIKVVRGEAENSRIAIRNI 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 RRD LK K SED + E +QK+T+ ++K+ID K+KE+M Sbjct: 132 RRDANGDLKGLEKDKDISEDDLRVGEELVQKVTNDSVKSIDDLLAVKEKELME 184 >gi|296110369|ref|YP_003620750.1| ribosome recycling factor [Leuconostoc kimchii IMSNU 11154] gi|295831900|gb|ADG39781.1| ribosome recycling factor [Leuconostoc kimchii IMSNU 11154] Length = 181 Score = 154 bits (388), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 77/180 (42%), Positives = 123/180 (68%), Gaps = 3/180 (1%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 +L + K RM L++++ ++RTGR +P +LD ++VE YG+ PLNQVA+++V E R Sbjct: 3 FNLTDAKARMQGAQDALQRELGSIRTGRANPHILDRIEVEYYGAMTPLNQVASISVPEAR 62 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 +L+++ +DK ++ + R I+ S+LGLNP +G ++R+ +P+ TEE R LVK A AEK Sbjct: 63 ILMITPFDKTVLEEIIRAINISDLGLNPASDGNIVRLAIPQMTEEGRKDLVKQVKAEAEK 122 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +K+SVRN+RRD MD +KK + + ED E+D+QK+TD IK ID+ +K+KE++ Sbjct: 123 AKVSVRNVRRDAMDSVKKDK---ELPEDDARHAEDDVQKLTDENIKAIDTIASDKEKELL 179 >gi|167837038|ref|ZP_02463921.1| ribosome recycling factor [Burkholderia thailandensis MSMB43] Length = 186 Score = 154 bits (388), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 76/177 (42%), Positives = 112/177 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++ +M +I K D+ +RTGR +LD V+V+ YGS VP++QVAN+T+++ R + Sbjct: 8 KGVEQKMQRSIEAFKNDLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVANLTLVDARTIG 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K MVA VE+ I E++LGLNP G ++R+P+P TEERR L KV E +K+ Sbjct: 68 VQPWEKNMVAKVEKAIREADLGLNPATSGDLIRVPMPPLTEERRRELTKVVKGEGETAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +VRN+RRD + LKK K + SED +D+QK+TD + ID + K EIM Sbjct: 128 AVRNLRRDANEQLKKLVKDKEISEDDERRAGDDVQKLTDKHVAEIDKLVQAKDAEIM 184 >gi|107028804|ref|YP_625899.1| ribosome recycling factor [Burkholderia cenocepacia AU 1054] gi|116690037|ref|YP_835660.1| ribosome recycling factor [Burkholderia cenocepacia HI2424] gi|170733372|ref|YP_001765319.1| ribosome recycling factor [Burkholderia cenocepacia MC0-3] gi|254247886|ref|ZP_04941207.1| Ribosome recycling factor [Burkholderia cenocepacia PC184] gi|123070966|sp|Q1BHH9|RRF_BURCA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166230415|sp|A0K8E0|RRF_BURCH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238688551|sp|B1JUE7|RRF_BURCC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|105897968|gb|ABF80926.1| ribosome recycling factor [Burkholderia cenocepacia AU 1054] gi|116648126|gb|ABK08767.1| ribosome recycling factor [Burkholderia cenocepacia HI2424] gi|124872662|gb|EAY64378.1| Ribosome recycling factor [Burkholderia cenocepacia PC184] gi|169816614|gb|ACA91197.1| ribosome recycling factor [Burkholderia cenocepacia MC0-3] Length = 186 Score = 154 bits (388), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 75/177 (42%), Positives = 114/177 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++ +M +I K D+ +RTGR +LD V+V+ YGS VP++QVAN+T+++ R + Sbjct: 8 KGVEQKMQRSIEAFKNDLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVANLTLVDARTIG 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K MVA VE+ I E++LGLNP G ++R+P+P TEERR L KV + E +K+ Sbjct: 68 VQPWEKNMVAKVEKAIREADLGLNPATTGDLIRVPMPALTEERRRELTKVVKSEGETAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++RN+RRD + LKK K + SED +D+QK+TD + ID + K+ EIM Sbjct: 128 AIRNLRRDANEALKKLVKDKEISEDDERRASDDVQKLTDKHVAEIDKLVQTKEAEIM 184 >gi|237747788|ref|ZP_04578268.1| ribosome recycling factor [Oxalobacter formigenes OXCC13] gi|229379150|gb|EEO29241.1| ribosome recycling factor [Oxalobacter formigenes OXCC13] Length = 186 Score = 154 bits (388), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 74/172 (43%), Positives = 114/172 (66%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M +I LK D+ +RTGR +LD V+V+ YGS ++QVAN+T+L+ R + V W+ Sbjct: 13 KMNKSIESLKADLAKVRTGRAHTGILDHVEVDYYGSPTKISQVANITLLDARTISVQPWE 72 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K+MV ++E+ I +S+LGLNP G+++R+P P TEERR +VK+ E +K++VRNI Sbjct: 73 KKMVNAIEKAIRDSDLGLNPSTMGEIIRVPTPALTEERRKEMVKLVKTEGEDAKVAVRNI 132 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD + +KK K + SED ++DIQK+TD ++ ID +K+KE+M Sbjct: 133 RRDANEAVKKMVKDKECSEDDERRSQDDIQKLTDKFVQQIDKLLADKEKEVM 184 >gi|15598849|ref|NP_252343.1| ribosome recycling factor [Pseudomonas aeruginosa PAO1] gi|107103167|ref|ZP_01367085.1| hypothetical protein PaerPA_01004236 [Pseudomonas aeruginosa PACS2] gi|116051650|ref|YP_789511.1| ribosome recycling factor [Pseudomonas aeruginosa UCBPP-PA14] gi|218890122|ref|YP_002438986.1| ribosome recycling factor [Pseudomonas aeruginosa LESB58] gi|254236567|ref|ZP_04929890.1| ribosome recycling factor [Pseudomonas aeruginosa C3719] gi|254242350|ref|ZP_04935672.1| ribosome recycling factor [Pseudomonas aeruginosa 2192] gi|313109058|ref|ZP_07795030.1| ribosome recycling factor [Pseudomonas aeruginosa 39016] gi|6226046|sp|O82853|RRF_PSEAE RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|122260793|sp|Q02RC5|RRF_PSEAB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226703267|sp|B7V7G0|RRF_PSEA8 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|9949814|gb|AAG07041.1|AE004785_5 ribosome recycling factor [Pseudomonas aeruginosa PAO1] gi|3417449|dbj|BAA32345.1| ribosome recycling factor [Pseudomonas aeruginosa] gi|115586871|gb|ABJ12886.1| ribosome recycling factor [Pseudomonas aeruginosa UCBPP-PA14] gi|126168498|gb|EAZ54009.1| ribosome recycling factor [Pseudomonas aeruginosa C3719] gi|126195728|gb|EAZ59791.1| ribosome recycling factor [Pseudomonas aeruginosa 2192] gi|218770345|emb|CAW26110.1| ribosome recycling factor [Pseudomonas aeruginosa LESB58] gi|310881532|gb|EFQ40126.1| ribosome recycling factor [Pseudomonas aeruginosa 39016] Length = 185 Score = 154 bits (388), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 78/174 (44%), Positives = 109/174 (62%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 ++RMG T+ L +RTGR PS+LD V V YG+ PL QVANVTV + R L ++V Sbjct: 10 QERMGKTLEALGHAFAKIRTGRAHPSILDSVMVSYYGADTPLRQVANVTVEDSRTLALAV 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +DK M+ +VE+ I S+LGLNP G +R+P+P TEE R K A A AE++++SVR Sbjct: 70 FDKSMIQAVEKAIMTSDLGLNPATAGTTIRVPMPALTEETRKGYTKQARAEAEQARVSVR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 NIRRD + LK +K + SED +D+QK+TD I I+ E K+ ++M Sbjct: 130 NIRRDALAQLKDLQKEKEISEDEERRAGDDVQKLTDKFIGEIEKALEAKEADLM 183 >gi|167756899|ref|ZP_02429026.1| hypothetical protein CLORAM_02448 [Clostridium ramosum DSM 1402] gi|167703074|gb|EDS17653.1| hypothetical protein CLORAM_02448 [Clostridium ramosum DSM 1402] Length = 193 Score = 154 bits (388), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 78/184 (42%), Positives = 120/184 (65%), Gaps = 6/184 (3%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N ++D N +RM TI ++D+ ++RTGR +P+MLD V V YGS P+NQ+A ++V Sbjct: 14 INMILDDTN--ERMTKTIESFQRDLSSVRTGRANPNMLDRVMVNYYGSPTPVNQIAGISV 71 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 +E R LV+ +DK + +E GI+E++LGL P +G+++RI VP TEERR K Sbjct: 72 VEGRQLVIKPYDKSSIKDIEHGIYEADLGLTPQNDGEIIRIMVPALTEERRKEFAKNVWK 131 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 +AE +K+S+RNIRRD D +KK+ SED + + + +QK+TD +K ID + K+ Sbjct: 132 FAENAKVSIRNIRRDSNDEIKKT----DGSEDEIKAGQERVQKLTDKFVKEIDEIAKVKE 187 Query: 181 KEIM 184 K+IM Sbjct: 188 KDIM 191 >gi|254495059|ref|ZP_05107983.1| Ribosome recycling factor [Polaribacter sp. MED152] gi|85819409|gb|EAQ40566.1| Ribosome recycling factor [Polaribacter sp. MED152] Length = 184 Score = 154 bits (388), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 81/186 (43%), Positives = 120/186 (64%), Gaps = 6/186 (3%) Query: 1 MNQVID--LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 MN+ I+ L K+ MG+ I+ L+K+++++R G+ +P+ML V V+ YGS PL+QVANV Sbjct: 1 MNEEIEFILDTAKEAMGNAITHLEKELVSIRAGKATPAMLSTVMVDYYGSQTPLSQVANV 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 + R L + W+K M+ +E+ I +NLGLNP+ G ++ I VP TEERR L K A Sbjct: 61 NTPDARTLSIQPWEKNMLQPIEKAIQIANLGLNPMNNGDLIMINVPPLTEERRKGLAKQA 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 A AE +K+ VRN R+D + +KK + S+DM E+D+QK+TD+ +KNID Sbjct: 121 KAEAEHAKVGVRNARKDANNDIKKV----EISDDMKKIAEDDVQKLTDTYVKNIDEKLAV 176 Query: 179 KKKEIM 184 K+KEIM Sbjct: 177 KEKEIM 182 >gi|254179324|ref|ZP_04885923.1| ribosome recycling factor [Burkholderia pseudomallei 1655] gi|184209864|gb|EDU06907.1| ribosome recycling factor [Burkholderia pseudomallei 1655] Length = 186 Score = 154 bits (388), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 75/177 (42%), Positives = 114/177 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++++ +M +I + D+ +RTGR +LD V+V+ YGS VP++QVAN+T+++ R + Sbjct: 8 KSVEQKMQRSIEAFRNDLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVANLTLVDARTIG 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K MVA VE+ I E++LGLNP G ++R+P+P TEERR L KV + E +K+ Sbjct: 68 VQPWEKTMVAKVEKAIREADLGLNPATSGDLIRVPMPPLTEERRRELTKVVKSEGETAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +VRN+RRD + LKK K + SED +D+QK+TD + ID + K EIM Sbjct: 128 AVRNLRRDANEQLKKLVKDKEISEDDERRASDDVQKLTDKHVAEIDKLVQAKDAEIM 184 >gi|225570389|ref|ZP_03779414.1| hypothetical protein CLOHYLEM_06489 [Clostridium hylemonae DSM 15053] gi|225160760|gb|EEG73379.1| hypothetical protein CLOHYLEM_06489 [Clostridium hylemonae DSM 15053] Length = 183 Score = 154 bits (388), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 76/173 (43%), Positives = 113/173 (65%), Gaps = 1/173 (0%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 D+M TI+ L+ ++ +R GR +P++L+ + V YG+ P+ QVANV+V E RM+ + W Sbjct: 10 DKMNKTIASLEGELAAIRAGRANPNVLNKIMVNYYGTPTPIQQVANVSVPEARMIHIQPW 69 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 +K MV +E+ I S+LG+NP +G +R+ PE TEERR L K E +K+++RN Sbjct: 70 EKSMVKEIEKAIMTSDLGINPTNDGSAIRLAFPELTEERRKELAKDVKKKGENAKVAIRN 129 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 IRRDG D LKK + S + SED + LE+++QK+TD IK +D E K KE+M Sbjct: 130 IRRDGNDTLKKLKGS-EVSEDEIKDLEDELQKLTDKFIKEVDKAVEAKSKEVM 181 >gi|78485626|ref|YP_391551.1| ribosome recycling factor [Thiomicrospira crunogena XCL-2] gi|123555416|sp|Q31G46|RRF_THICR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|78363912|gb|ABB41877.1| ribosome recycling factor [Thiomicrospira crunogena XCL-2] Length = 185 Score = 154 bits (388), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 75/186 (40%), Positives = 117/186 (62%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 ++++ D N DRM ++ L+ + +RTGR PS+LD VKV+ YGS VP++QVANV V Sbjct: 2 IDEIFDDAN--DRMTKSVENLESNFAKIRTGRAHPSILDAVKVDYYGSEVPVSQVANVNV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R L V W++ MV+ VE+ I S++G+NP+ G V+RIP+P TEERR +K+A + Sbjct: 60 EDARTLTVQPWEQSMVSVVEKAIMTSDIGVNPVTTGNVMRIPMPPLTEERRKEFIKLAKS 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE++K+++RNIRRD K K + ++D + E IQK TD + +D +K+ Sbjct: 120 EAEQTKVAIRNIRRDANADFKNLNKDKEITDDELRQAEEQIQKATDEHVSQVDQMLAKKE 179 Query: 181 KEIMHF 186 + +M Sbjct: 180 ESLMEI 185 >gi|16803354|ref|NP_464839.1| ribosome recycling factor [Listeria monocytogenes EGD-e] gi|46907540|ref|YP_013929.1| ribosome recycling factor [Listeria monocytogenes serotype 4b str. F2365] gi|47094294|ref|ZP_00231999.1| ribosome recycling factor [Listeria monocytogenes str. 4b H7858] gi|47096939|ref|ZP_00234516.1| ribosome recycling factor [Listeria monocytogenes str. 1/2a F6854] gi|224501742|ref|ZP_03670049.1| ribosome recycling factor [Listeria monocytogenes FSL R2-561] gi|226223915|ref|YP_002758022.1| ribosome recycling factor [Listeria monocytogenes Clip81459] gi|254824627|ref|ZP_05229628.1| ribosome recycling factor [Listeria monocytogenes FSL J1-194] gi|254828675|ref|ZP_05233362.1| ribosome recycling factor [Listeria monocytogenes FSL N3-165] gi|254829929|ref|ZP_05234584.1| ribosome recycling factor [Listeria monocytogenes 10403S] gi|254852635|ref|ZP_05241983.1| ribosome recycling factor [Listeria monocytogenes FSL R2-503] gi|254898521|ref|ZP_05258445.1| ribosome recycling factor [Listeria monocytogenes J0161] gi|254911988|ref|ZP_05262000.1| ribosome recycling factor [Listeria monocytogenes J2818] gi|254932371|ref|ZP_05265730.1| ribosome recycling factor [Listeria monocytogenes HPB2262] gi|254936315|ref|ZP_05268012.1| ribosome recycling factor [Listeria monocytogenes F6900] gi|254992874|ref|ZP_05275064.1| ribosome recycling factor [Listeria monocytogenes FSL J2-064] gi|255026995|ref|ZP_05298981.1| ribosome recycling factor [Listeria monocytogenes FSL J2-003] gi|255522289|ref|ZP_05389526.1| ribosome recycling factor [Listeria monocytogenes FSL J1-175] gi|284801699|ref|YP_003413564.1| hypothetical protein LM5578_1453 [Listeria monocytogenes 08-5578] gi|284994841|ref|YP_003416609.1| hypothetical protein LM5923_1406 [Listeria monocytogenes 08-5923] gi|300765446|ref|ZP_07075428.1| ribosome recycling factor [Listeria monocytogenes FSL N1-017] gi|22001941|sp|Q8Y7G7|RRF_LISMO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|60390258|sp|Q720A8|RRF_LISMF RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|259494548|sp|C1L2M0|RRF_LISMC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|16410730|emb|CAC99392.1| frr [Listeria monocytogenes EGD-e] gi|46880808|gb|AAT04106.1| ribosome recycling factor [Listeria monocytogenes serotype 4b str. F2365] gi|47014699|gb|EAL05655.1| ribosome recycling factor [Listeria monocytogenes str. 1/2a F6854] gi|47017338|gb|EAL08166.1| ribosome recycling factor [Listeria monocytogenes str. 4b H7858] gi|225876377|emb|CAS05086.1| Putative ribosome recycling factor [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258601078|gb|EEW14403.1| ribosome recycling factor [Listeria monocytogenes FSL N3-165] gi|258605951|gb|EEW18559.1| ribosome recycling factor [Listeria monocytogenes FSL R2-503] gi|258608905|gb|EEW21513.1| ribosome recycling factor [Listeria monocytogenes F6900] gi|284057261|gb|ADB68202.1| hypothetical protein LM5578_1453 [Listeria monocytogenes 08-5578] gi|284060308|gb|ADB71247.1| hypothetical protein LM5923_1406 [Listeria monocytogenes 08-5923] gi|293583927|gb|EFF95959.1| ribosome recycling factor [Listeria monocytogenes HPB2262] gi|293589952|gb|EFF98286.1| ribosome recycling factor [Listeria monocytogenes J2818] gi|293593865|gb|EFG01626.1| ribosome recycling factor [Listeria monocytogenes FSL J1-194] gi|300513883|gb|EFK40948.1| ribosome recycling factor [Listeria monocytogenes FSL N1-017] gi|328468599|gb|EGF39599.1| ribosome recycling factor [Listeria monocytogenes 1816] gi|328475037|gb|EGF45825.1| ribosome recycling factor [Listeria monocytogenes 220] gi|332311757|gb|EGJ24852.1| Ribosome-recycling factor [Listeria monocytogenes str. Scott A] Length = 185 Score = 154 bits (388), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 76/180 (42%), Positives = 121/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K++M L + + T+R GR + S+LD + V+ YG+ P+NQ+A+++V E RML Sbjct: 6 LSKSKEKMEKAEQALTRQLGTIRAGRANASLLDRLSVDYYGAATPVNQMASISVPEARML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK ++ +E+ I +S+LGL P +G VLR+ +P+ TEERR LVK AE++K Sbjct: 66 LITPYDKTILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRR+ + LKK K+G +ED + S D+QK+TD +IKNIDS ++K+ EI+ Sbjct: 126 VAVRNIRREANEELKKLEKNGDITEDDLRSYGEDVQKLTDESIKNIDSITKDKEAEILEV 185 >gi|299144039|ref|ZP_07037119.1| ribosome recycling factor [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518524|gb|EFI42263.1| ribosome recycling factor [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 185 Score = 153 bits (387), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 70/179 (39%), Positives = 116/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ +++M TIS ++D+ ++R GR +PS+LD + V+ YG PLNQVA ++ EPR+L Sbjct: 7 KDAEEKMKKTISVYREDLQSIRAGRANPSLLDKITVDYYGQATPLNQVAGISAPEPRLLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++ WD ++ ++E+ I +S LG+ P +G+++R+ +P TEERR L K+ E +K+ Sbjct: 67 ITPWDASLIPAIEKAILKSELGITPSNDGKIVRLLIPHLTEERRKELTKIVRKNGENAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD +D +KK KS + SED E IQK+TD I+ +D + K+ E+M Sbjct: 127 AIRNIRRDSIDEVKKLEKSKEISEDDRKDGEEQIQKLTDKYIEELDKITKSKEDELMEI 185 >gi|167563185|ref|ZP_02356101.1| ribosome recycling factor [Burkholderia oklahomensis EO147] gi|167570368|ref|ZP_02363242.1| ribosome recycling factor [Burkholderia oklahomensis C6786] Length = 186 Score = 153 bits (387), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 75/177 (42%), Positives = 114/177 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++ +M +I K D+ +RTGR +LD V+V+ YGS VP++QVAN+T+++ R + Sbjct: 8 KGVEQKMQRSIEAFKNDLAKIRTGRAHAGLLDHVQVDYYGSMVPISQVANLTLVDARTIG 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K MVA VE+ I E++LGLNP G ++R+P+P TEERR L KV + E +K+ Sbjct: 68 VQPWEKNMVAKVEKAIREADLGLNPATAGDLIRVPMPALTEERRRELTKVVKSEGETAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++RN+RRD + LKK K + SED +D+QK+TD + ID + K+ EIM Sbjct: 128 AIRNLRRDANEALKKLVKDKEISEDDERRAGDDVQKLTDKHVAEIDKLVQSKEAEIM 184 >gi|228992552|ref|ZP_04152479.1| Ribosome-recycling factor [Bacillus pseudomycoides DSM 12442] gi|228767186|gb|EEM15822.1| Ribosome-recycling factor [Bacillus pseudomycoides DSM 12442] Length = 185 Score = 153 bits (387), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 76/179 (42%), Positives = 114/179 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ ++M ++ +++ ++R GR S S LD V+V+ YG+ P+ Q+AN+TV E R+L Sbjct: 6 LKATNEKMEKAVAAYSRELASVRAGRASASALDKVQVDYYGAPTPVVQLANITVPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +DK + +E+ I +++LGLNP +G V+RI P TEERR LVK YAE++K Sbjct: 66 VIQPYDKTSIGDIEKAILKADLGLNPSNDGSVIRIAFPALTEERRRDLVKTVKKYAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRN+RRD D LKK K+G +ED + DIQK TD I +D + K+KEIM Sbjct: 126 VAVRNVRRDANDDLKKLEKAGDITEDDLRGYTEDIQKETDKYIAKVDEITKNKEKEIME 184 >gi|228998600|ref|ZP_04158187.1| Ribosome-recycling factor [Bacillus mycoides Rock3-17] gi|229006100|ref|ZP_04163788.1| Ribosome-recycling factor [Bacillus mycoides Rock1-4] gi|228755176|gb|EEM04533.1| Ribosome-recycling factor [Bacillus mycoides Rock1-4] gi|228761068|gb|EEM10027.1| Ribosome-recycling factor [Bacillus mycoides Rock3-17] Length = 185 Score = 153 bits (387), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 76/179 (42%), Positives = 114/179 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ ++M ++ +++ ++R GR S S LD V+V+ YG+ P+ Q+AN+TV E R+L Sbjct: 6 LKAANEKMEKAVAAYSRELASVRAGRASASALDKVQVDYYGAPTPVVQLANITVPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +DK + +E+ I +++LGLNP +G V+RI P TEERR LVK YAE++K Sbjct: 66 VIQPYDKTSIGDIEKAILKADLGLNPSNDGSVIRIAFPALTEERRRDLVKTVKKYAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRN+RRD D LKK K+G +ED + DIQK TD I +D + K+KEIM Sbjct: 126 VAVRNVRRDANDDLKKLEKAGDITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIME 184 >gi|22537655|ref|NP_688506.1| ribosome recycling factor [Streptococcus agalactiae 2603V/R] gi|25011612|ref|NP_736007.1| ribosome recycling factor [Streptococcus agalactiae NEM316] gi|76788564|ref|YP_330142.1| ribosome recycling factor [Streptococcus agalactiae A909] gi|76799120|ref|ZP_00781307.1| ribosome recycling factor [Streptococcus agalactiae 18RS21] gi|77405174|ref|ZP_00782272.1| ribosome recycling factor [Streptococcus agalactiae H36B] gi|77411699|ref|ZP_00788038.1| ribosome recycling factor [Streptococcus agalactiae CJB111] gi|77413972|ref|ZP_00790145.1| ribosome recycling factor [Streptococcus agalactiae 515] gi|54039298|sp|P66741|RRF_STRA5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|54042006|sp|P66740|RRF_STRA3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|123601478|sp|Q3K011|RRF_STRA1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|22534542|gb|AAN00379.1|AE014261_7 ribosome recycling factor [Streptococcus agalactiae 2603V/R] gi|24413152|emb|CAD47230.1| ribosome recycling factor [Streptococcus agalactiae NEM316] gi|76563621|gb|ABA46205.1| ribosome recycling factor [Streptococcus agalactiae A909] gi|76585524|gb|EAO62095.1| ribosome recycling factor [Streptococcus agalactiae 18RS21] gi|77159952|gb|EAO71090.1| ribosome recycling factor [Streptococcus agalactiae 515] gi|77162271|gb|EAO73243.1| ribosome recycling factor [Streptococcus agalactiae CJB111] gi|77176176|gb|EAO78947.1| ribosome recycling factor [Streptococcus agalactiae H36B] gi|319745486|gb|EFV97790.1| ribosome recycling factor [Streptococcus agalactiae ATCC 13813] Length = 185 Score = 153 bits (387), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 75/175 (42%), Positives = 114/175 (65%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 ++R + L ++ +R GR + S+LD ++VE YG+ PLNQ+A++TV E R+L++S Sbjct: 10 QERFEQSHQSLSREFAGIRAGRANASLLDRIQVEYYGAPTPLNQLASITVPEARVLLISP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +DK + +ER I+ES+LG+NP +G V+R+ +P TEE R L K E +KI++R Sbjct: 70 FDKSSIKDIERAINESDLGINPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKIAIR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 NIRRD MD KK K+ + +ED + SLE DIQK TD +K+ID K+KE++ Sbjct: 130 NIRRDAMDEAKKQEKNKEITEDDLKSLEKDIQKATDDAVKHIDEMTANKEKELLE 184 >gi|313623929|gb|EFR94035.1| ribosome recycling factor [Listeria innocua FSL J1-023] Length = 185 Score = 153 bits (387), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 76/180 (42%), Positives = 121/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K++M L + + T+R GR + S+LD + V+ YG+ P+NQ+A+++V E RML Sbjct: 6 LSKSKEKMEKAEQALTRQLGTIRAGRANASLLDRLTVDYYGAATPVNQMASISVPEARML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK ++ +E+ I +S+LGL P +G VLR+ +P+ TEERR LVK AE++K Sbjct: 66 LITPYDKTILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRR+ + LKK K+G +ED + S D+QK+TD +IKNIDS ++K+ EI+ Sbjct: 126 VAVRNIRREANEELKKLEKNGDITEDDLRSYGEDVQKLTDESIKNIDSITKDKEAEILEV 185 >gi|296101340|ref|YP_003611486.1| ribosome releasing factor [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055799|gb|ADF60537.1| ribosome releasing factor [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 185 Score = 153 bits (387), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 78/174 (44%), Positives = 112/174 (64%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM + K + +RTGR SPS+LD + VE YG+ PL Q+A+VTV + R L ++V+D Sbjct: 12 RMEKCVEAFKTQISKIRTGRASPSLLDGIIVEYYGTPTPLRQLASVTVEDTRTLKINVFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + M +VE+ I S+LGLNP G +R+P+P TEERR L+KV AE+ ++SVRN+ Sbjct: 72 RSMGPAVEKAIMASDLGLNPSSAGADIRVPLPPLTEERRKDLIKVVRGEAEQGRVSVRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD D +K K + SED ++DIQK+TD+ IK ID+ +K+ E+M F Sbjct: 132 RRDANDKVKALLKEKEISEDDDRRSQDDIQKMTDAAIKKIDAALADKEAELMQF 185 >gi|291547840|emb|CBL20948.1| ribosome recycling factor [Ruminococcus sp. SR1/5] Length = 183 Score = 153 bits (387), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 78/178 (43%), Positives = 115/178 (64%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q + +MG T++ L+ ++ T+R GR +P +LD + V+ YG+ PL QVAN++V E RM+ Sbjct: 5 IQVYETKMGKTLNALESELTTIRAGRANPHILDKLTVDYYGAPTPLQQVANISVPEARMI 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + W+ M+ ++E+ I S+LGLNP +G+++R+ PE TEERR LVK E +K Sbjct: 65 QIQPWESSMIKAIEKAILCSDLGLNPSNDGKMIRLVFPELTEERRKELVKDVKKKGEGAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++VRNIRRD D KK K SED + LE+ IQK+TD IK +D E K KEI+ Sbjct: 125 VAVRNIRRDANDAFKKLAKQD-VSEDEIKELEDQIQKLTDKYIKEVDKAIENKSKEIL 181 >gi|126654121|ref|ZP_01725939.1| Frr [Bacillus sp. B14905] gi|126589401|gb|EAZ83551.1| Frr [Bacillus sp. B14905] Length = 185 Score = 153 bits (387), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 73/179 (40%), Positives = 120/179 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ KD+M TI+ +++ ++R GR + S+LD + V+ YG+ P+NQ+A V+V E R+L Sbjct: 6 LEQAKDKMNKTIAAFTRELSSIRAGRANASLLDRIMVDYYGAPTPINQLAGVSVPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V++ +DK ++ +E+ I +S++G+ P +G ++R+ +P TEERR LVK AE +K Sbjct: 66 VITPYDKTILGEIEKAIMKSDIGITPTNDGSIIRLMIPALTEERRKDLVKQVKKEAEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 I+VRN+RRD D LKK K+G+ +ED + +DIQK+TD I +D ++K+KEI+ Sbjct: 126 IAVRNVRRDANDDLKKLEKAGEITEDDLRGYGDDIQKLTDEFIVKVDQVTKDKEKEILE 184 >gi|320547289|ref|ZP_08041581.1| ribosome recycling factor [Streptococcus equinus ATCC 9812] gi|320448093|gb|EFW88844.1| ribosome recycling factor [Streptococcus equinus ATCC 9812] Length = 185 Score = 153 bits (387), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 74/179 (41%), Positives = 117/179 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+R + S L ++ ++R GR + S+LD ++VE YG+ PLNQ+A++TV E R+L Sbjct: 6 IEKAKERFEQSHSSLAREFASIRAGRANASLLDRIQVEYYGAMTPLNQLASITVPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +DK + +E I+ S+LG+NP +G V+R+ +P TEE R AL K E +K Sbjct: 66 LISPFDKSSLKDIEHAINASDLGINPANDGSVIRLVIPALTEETRKALAKDVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +++RNIRRD MD KK K+ + +ED + LE DIQK TD +K+ID+ K+KE++ Sbjct: 126 VAIRNIRRDAMDEAKKQEKAKEITEDELKVLEKDIQKATDEAVKHIDTMTANKEKELLE 184 >gi|297588384|ref|ZP_06947027.1| ribosome recycling factor [Finegoldia magna ATCC 53516] gi|297573757|gb|EFH92478.1| ribosome recycling factor [Finegoldia magna ATCC 53516] Length = 185 Score = 153 bits (387), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 72/180 (40%), Positives = 117/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++++ + T+ L++++ T+R GR +PS+LD + V+ YG+ PL QVA ++ E R+L Sbjct: 6 LKDMEAKADKTLHALREELKTVRAGRANPSILDNIMVDYYGTSTPLKQVATISAPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK ++ +E+ I SNLG+ P +G ++R+P P+ TE+RR L KV Y EKSK Sbjct: 66 TIQPWDKSIMKEIEKQIQASNLGITPSNDGSIIRLPFPQLTEDRRKELTKVVKEYGEKSK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++R+IRRD +D KK K+ + SED + L +DIQ +TD K ID+ +K+ E+M Sbjct: 126 VTIRSIRRDFVDDAKKMEKNAEISEDELHVLLDDIQSLTDKLTKEIDNIVTDKETELMEI 185 >gi|28210950|ref|NP_781894.1| ribosome recycling factor [Clostridium tetani E88] gi|34924948|sp|Q895K9|RRF_CLOTE RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|28203389|gb|AAO35831.1| ribosome recycling factor [Clostridium tetani E88] Length = 183 Score = 153 bits (387), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 74/175 (42%), Positives = 115/175 (65%), Gaps = 2/175 (1%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 D+M + LKKD+ +L+ GR +P+MLD ++ E YG+ PL+Q+AN++V E R+L + W Sbjct: 11 DKMSKALLALKKDLASLKAGRANPAMLDKIEAEYYGTMTPLSQLANISVPEARILQIQPW 70 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 DK + ++E+ I S+LGLNP +G ++R+ +PE TEE R +VK Y E +KI++R+ Sbjct: 71 DKSSLKAIEKAILVSDLGLNPNNDGTIIRLIIPELTEETRRNIVKTVKKYGEDTKIAIRS 130 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +RRDG D +K + SED + E +IQKITD+ +K +D + K+KEIM Sbjct: 131 VRRDGNDKIKDLK--SDMSEDDIKKAEEEIQKITDNYVKKVDEMIDIKEKEIMSI 183 >gi|251810690|ref|ZP_04825163.1| peptide chain release factor RF4 [Staphylococcus epidermidis BCM-HMP0060] gi|282876309|ref|ZP_06285176.1| ribosome recycling factor [Staphylococcus epidermidis SK135] gi|251805850|gb|EES58507.1| peptide chain release factor RF4 [Staphylococcus epidermidis BCM-HMP0060] gi|281295334|gb|EFA87861.1| ribosome recycling factor [Staphylococcus epidermidis SK135] Length = 184 Score = 153 bits (387), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 76/180 (42%), Positives = 118/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +++ K RM +I L +++ + GR + ++L+ V V+ YG+ P+ Q+A++ V E R+L Sbjct: 5 IKDTKSRMQKSIDNLSRELANISAGRANSNLLNGVTVDYYGAPTPVQQLASINVPEARLL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+S +DK VA +E+ I +NLG+NP +G+V+RI VP TEERR LVK E +K Sbjct: 65 VISPYDKSSVADIEKAIIAANLGVNPTSDGEVIRISVPALTEERRKELVKEVKKIGEDAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+RNIRRD D LKK K+G +ED + S +D+QK TD++IK ID +K+K+I+ Sbjct: 125 VSIRNIRRDINDQLKKDEKNGDITEDDLRSQTDDVQKATDNSIKEIDQLVADKEKDIISV 184 >gi|237734608|ref|ZP_04565089.1| flagellar biosynthetic protein flhB [Mollicutes bacterium D7] gi|229382428|gb|EEO32519.1| flagellar biosynthetic protein flhB [Coprobacillus sp. D7] Length = 181 Score = 153 bits (387), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 78/184 (42%), Positives = 120/184 (65%), Gaps = 6/184 (3%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N ++D N +RM TI ++D+ ++RTGR +P+MLD V V YGS P+NQ+A ++V Sbjct: 2 INMILDDTN--ERMTKTIESFQRDLSSVRTGRANPNMLDRVMVNYYGSPTPVNQIAGISV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 +E R LV+ +DK + +E GI+E++LGL P +G+++RI VP TEERR K Sbjct: 60 VEGRQLVIKPYDKSSIKDIEHGIYEADLGLTPQNDGEIIRIMVPALTEERRKEFAKNVWK 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 +AE +K+S+RNIRRD D +KK+ SED + + + +QK+TD +K ID + K+ Sbjct: 120 FAENAKVSIRNIRRDSNDEIKKT----DGSEDEIKAGQERVQKLTDKFVKEIDEIAKVKE 175 Query: 181 KEIM 184 K+IM Sbjct: 176 KDIM 179 >gi|253700113|ref|YP_003021302.1| ribosome recycling factor [Geobacter sp. M21] gi|259494543|sp|C6E515|RRF_GEOSM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|251774963|gb|ACT17544.1| ribosome recycling factor [Geobacter sp. M21] Length = 185 Score = 153 bits (387), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 75/180 (41%), Positives = 116/180 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + N+ MG +I L+K+ +RTGR + S+LD +K+++YG+ PLNQVA + + E R + Sbjct: 6 ISNMNVHMGKSIESLRKEYQKVRTGRATTSLLDDIKIDSYGTLSPLNQVATLAIPEARTI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +S WD +M+A +E+ I SNLGLNP +G+++R+ +P TEERR +VK AE++K Sbjct: 66 TISPWDSKMIAPIEKAIMNSNLGLNPANDGKMIRLVLPPLTEERRKDIVKQLKRDAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD +D LKK K SED + E D+Q T+S + +D K+KE+M Sbjct: 126 VALRNIRRDAIDQLKKLEKDKSISEDELKRAEKDVQDSTNSHVAKVDEVLLHKEKEVMEV 185 >gi|260596592|ref|YP_003209163.1| ribosome recycling factor [Cronobacter turicensis z3032] gi|260215769|emb|CBA28183.1| Ribosome-recycling factor [Cronobacter turicensis z3032] Length = 185 Score = 153 bits (387), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 74/174 (42%), Positives = 112/174 (64%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM + K + +RTGR SPS+LD + VE YG+ PL Q+ANVTV + R L ++V+D Sbjct: 12 RMDKCVEAFKTQISKVRTGRASPSLLDGIVVEYYGTPTPLRQLANVTVEDSRTLKINVFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + M +VE+ I S+LGLNP G +R+P+P TEERR L+KV AE++++++RN+ Sbjct: 72 RSMSPAVEKAIMASDLGLNPSSAGSDIRVPLPPLTEERRKDLIKVVRGEAEQARVAIRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD D +K K + ED ++D+QK+TD+ IK +D+ +K+ E+M F Sbjct: 132 RRDANDKVKALLKDKEIGEDEDRRSQDDVQKMTDAAIKKVDAALADKEAELMQF 185 >gi|115352100|ref|YP_773939.1| ribosome recycling factor [Burkholderia ambifaria AMMD] gi|170699876|ref|ZP_02890906.1| ribosome recycling factor [Burkholderia ambifaria IOP40-10] gi|171318103|ref|ZP_02907272.1| ribosome recycling factor [Burkholderia ambifaria MEX-5] gi|172060964|ref|YP_001808616.1| ribosome recycling factor [Burkholderia ambifaria MC40-6] gi|122322843|sp|Q0BE18|RRF_BURCM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238689163|sp|B1YS71|RRF_BURA4 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|115282088|gb|ABI87605.1| ribosome recycling factor [Burkholderia ambifaria AMMD] gi|170135198|gb|EDT03496.1| ribosome recycling factor [Burkholderia ambifaria IOP40-10] gi|171096727|gb|EDT41612.1| ribosome recycling factor [Burkholderia ambifaria MEX-5] gi|171993481|gb|ACB64400.1| ribosome recycling factor [Burkholderia ambifaria MC40-6] Length = 186 Score = 153 bits (387), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 74/177 (41%), Positives = 114/177 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++ +M +I K D+ +RTGR +LD V+V+ YGS VP++QVAN+T+++ R + Sbjct: 8 KGVEQKMQRSIEAFKNDLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVANLTLVDARTIG 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K MVA VE+ I E++LGLNP G ++R+P+P TEERR L KV + E +K+ Sbjct: 68 VQPWEKNMVAKVEKAIREADLGLNPATAGDLIRVPMPALTEERRRELTKVVKSEGETAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++RN+RRD + LKK K + SED +D+QK+TD + +D + K+ EIM Sbjct: 128 AIRNLRRDANEALKKLVKDKEISEDDERRASDDVQKLTDKHVAEVDKLVQSKEAEIM 184 >gi|302038069|ref|YP_003798391.1| ribosome recycling factor [Candidatus Nitrospira defluvii] gi|300606133|emb|CBK42466.1| Ribosome recycling factor [Candidatus Nitrospira defluvii] Length = 187 Score = 153 bits (387), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 71/178 (39%), Positives = 115/178 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q + ++M I LK+D+ LRTGR S +++D ++V+ YG+ PL QVANV E R++ Sbjct: 9 QRVTEKMDHAIEHLKRDLAGLRTGRASVALVDGIRVDYYGTMTPLKQVANVATPEARLIT 68 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + W++ ++ +E+ I S+LGL P +G+++RIP+P TEERR L+KV + E+ K+ Sbjct: 69 IQPWEQNLIREIEKAIQTSDLGLTPSNDGKLIRIPLPPLTEERRKELIKVCKKHGEEVKV 128 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +R RRDG + LKK +K K +ED + E +IQK+TD ++ ID ++K+ EI+ Sbjct: 129 QIRGFRRDGNEELKKLQKDTKLTEDELRKSEAEIQKLTDQYVQKIDDVMKKKEGEILE 186 >gi|295110296|emb|CBL24249.1| ribosome recycling factor [Ruminococcus obeum A2-162] Length = 183 Score = 153 bits (387), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 77/178 (43%), Positives = 116/178 (65%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q + +M T++ ++++ T+R GR +P +LD + V+ YGS PL QVAN+TV E RM+ Sbjct: 5 VQKYEQKMTKTLNGFEEELTTIRAGRANPHILDKITVDYYGSPTPLQQVANITVPEARMI 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + W+ ++ S+E+ I S+LGLNP +G+++R+ +PE TEERR LVK E +K Sbjct: 65 QIQPWESSLIKSIEKAILTSDLGLNPSNDGKLIRLVLPELTEERRKELVKDVKKKGEAAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++VRNIRRD D KK K SED + LE+ +QK+TD IK ID+ + K KEI+ Sbjct: 125 VAVRNIRRDANDAFKKLTKQD-VSEDEIKDLEDSVQKLTDKFIKKIDAAVDTKAKEIL 181 >gi|289550950|ref|YP_003471854.1| Ribosome recycling factor [Staphylococcus lugdunensis HKU09-01] gi|315658452|ref|ZP_07911324.1| ribosome recycling factor [Staphylococcus lugdunensis M23590] gi|289180482|gb|ADC87727.1| Ribosome recycling factor [Staphylococcus lugdunensis HKU09-01] gi|315496781|gb|EFU85104.1| ribosome recycling factor [Staphylococcus lugdunensis M23590] Length = 184 Score = 153 bits (387), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 77/180 (42%), Positives = 116/180 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +++ K RM +I L +++ + GR + ++L+ V V+ YG+ P+ Q+A++ V E R+L Sbjct: 5 IKDTKARMNKSIENLSRELANINAGRANSNLLNGVTVDYYGAPTPVQQLASINVPEARLL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+S +DK V +ER I +NLG+NP +G+V+RI VP TEERR LVK E +K Sbjct: 65 VISPYDKTSVKDIERAIIAANLGVNPTSDGEVIRITVPALTEERRKELVKDVKKVGEDAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+RNIRRD D LKK K+G +ED + S +D+QK TD +IK ID +K+K+IM Sbjct: 125 VSIRNIRRDINDQLKKDEKNGDITEDDLRSQSDDVQKATDDSIKEIDQLVGDKEKDIMSV 184 >gi|134296025|ref|YP_001119760.1| ribosome recycling factor [Burkholderia vietnamiensis G4] gi|166230770|sp|A4JF72|RRF_BURVG RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|134139182|gb|ABO54925.1| ribosome recycling factor [Burkholderia vietnamiensis G4] Length = 186 Score = 153 bits (387), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 74/177 (41%), Positives = 114/177 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++ +M +I K D+ +RTGR +LD V+V+ YGS VP++QVAN+T+++ R + Sbjct: 8 KGVEQKMQRSIEAFKNDLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVANLTLVDARTIG 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K MVA VE+ I E++LGLNP G ++R+P+P TEERR L KV + E +K+ Sbjct: 68 VQPWEKNMVAKVEKAIREADLGLNPATSGDLIRVPMPALTEERRRELTKVVKSEGETAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++RN+RRD + LKK K + SED +D+QK+TD + +D + K+ EIM Sbjct: 128 AIRNLRRDANEALKKLVKDKEISEDDERRASDDVQKLTDKHVAEVDKLVQTKEAEIM 184 >gi|300173184|ref|YP_003772350.1| ribosome Recycling Factor, RRF [Leuconostoc gasicomitatum LMG 18811] gi|299887563|emb|CBL91531.1| Ribosome Recycling Factor, RRF [Leuconostoc gasicomitatum LMG 18811] Length = 181 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 77/181 (42%), Positives = 121/181 (66%), Gaps = 3/181 (1%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +L + K RM LK+++ ++RTGR +P +LD ++VE YG+ PL QVA+++V E Sbjct: 2 AFNLTDAKTRMQGAQDALKRELGSIRTGRANPHILDRIEVEYYGAMTPLKQVASISVPEA 61 Query: 64 RMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAE 123 R+L+++ +DK + + R I+ S+LGLNP +G ++R+ +P+ TEE R L K A AE Sbjct: 62 RILLITPFDKSALEEIVRAINMSDLGLNPASDGNIVRLAIPQMTEEGRKDLAKQVKAEAE 121 Query: 124 KSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 K+K+S+RN+RRD MD +KK + + ED V + E+D+QK+TD IK ID EK+KE+ Sbjct: 122 KAKVSIRNVRRDAMDTVKKDK---ELPEDDVRNAEDDVQKLTDDNIKAIDVIAAEKEKEL 178 Query: 184 M 184 + Sbjct: 179 L 179 >gi|53805188|ref|YP_113089.1| ribosome recycling factor [Methylococcus capsulatus str. Bath] gi|60390238|sp|Q60BA7|RRF_METCA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|53758949|gb|AAU93240.1| ribosome recycling factor [Methylococcus capsulatus str. Bath] Length = 185 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 76/173 (43%), Positives = 109/173 (63%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 +RM +I LK + +RTGR PS+L+ ++V YG+ VPL QVANV V + R L V+ W Sbjct: 11 ERMQKSIEALKHEFAKIRTGRAHPSLLEHIRVSYYGNEVPLTQVANVAVEDARSLAVTPW 70 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 ++ MV ++E+ I S+LGLNP G V+R+P+P TEERR L+KV AE ++++RN Sbjct: 71 ERNMVQAIEKAIMTSDLGLNPSTAGTVIRVPLPPLTEERRRDLIKVVRQEAENGRVAIRN 130 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 IRRD + LK + K SED + IQK TD IK ID E+K+ +++ Sbjct: 131 IRRDANNELKAALKEKLISEDEDRRSQEQIQKTTDQFIKEIDKLLEQKEADLL 183 >gi|260767822|ref|ZP_05876757.1| ribosome recycling factor [Vibrio furnissii CIP 102972] gi|260617331|gb|EEX42515.1| ribosome recycling factor [Vibrio furnissii CIP 102972] gi|315179348|gb|ADT86262.1| ribosome recycling factor [Vibrio furnissii NCTC 11218] Length = 185 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 77/179 (43%), Positives = 112/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK ++ +RTGR PS+L + VE YG+ PLNQ+ANV + R L Sbjct: 7 KDAQERMDKSVEALKNNLQKVRTGRAHPSLLSGLSVEYYGAATPLNQIANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DKE+ VE+ I S+LGLNP+ G V+R+P+P TEERR LVK+ AE ++ Sbjct: 67 ITVFDKELTPKVEKAILMSDLGLNPMSAGTVIRVPLPPLTEERRKDLVKIVRGEAEGGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD LK K + SED + +IQK+TD +K ID K+KE+M Sbjct: 127 AVRNIRRDANSDLKALLKDKEISEDDDRKAQEEIQKLTDIAVKRIDDVLAAKEKELMEV 185 >gi|238026905|ref|YP_002911136.1| ribosome recycling factor [Burkholderia glumae BGR1] gi|237876099|gb|ACR28432.1| Ribosome releasing factor [Burkholderia glumae BGR1] Length = 186 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 76/177 (42%), Positives = 113/177 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++ +M +I K D+ +RTGR +LD V+V+ YGS VP++QVAN+T+++ R + Sbjct: 8 KGVEQKMQRSIEAFKNDLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVANLTLVDARTIG 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K MVA VE+ I ES+LGLNP G ++R+P+P TEERR L KV + E +K+ Sbjct: 68 VQPWEKPMVAKVEKAIRESDLGLNPATSGDMIRVPMPALTEERRRELTKVVKSEGETAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +VRN+RRD + LKK K + SED +++QK+TD + ID + K EIM Sbjct: 128 AVRNLRRDANEQLKKLVKDKEISEDDERRASDEVQKLTDKHVAEIDKLVQAKDAEIM 184 >gi|323526485|ref|YP_004228638.1| ribosome recycling factor [Burkholderia sp. CCGE1001] gi|323383487|gb|ADX55578.1| ribosome recycling factor [Burkholderia sp. CCGE1001] Length = 186 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 76/172 (44%), Positives = 111/172 (64%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M +I K D+ +RTGR +LD ++ + YGS VP++QVAN+T+++ R + V W+ Sbjct: 13 KMQRSIDAFKNDLSKIRTGRAHTGLLDHIQCDYYGSPVPISQVANLTLIDARTIGVQPWE 72 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K+MV VE+ I ES+LGLNP +G V+R+P+P TEERR L KV + AE +K++VRN+ Sbjct: 73 KKMVQVVEKAIRESDLGLNPATQGDVIRVPMPALTEERRRELTKVVKSEAETAKVAVRNL 132 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD + LKK K + SED +D+QK+TD + ID K+ EIM Sbjct: 133 RRDANEQLKKLVKDKEISEDDERRAGDDVQKLTDKFVAEIDKLVATKEAEIM 184 >gi|187935220|ref|YP_001885459.1| ribosome recycling factor [Clostridium botulinum B str. Eklund 17B] gi|238691618|sp|B2TJ43|RRF_CLOBB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|187723373|gb|ACD24594.1| ribosome recycling factor [Clostridium botulinum B str. Eklund 17B] Length = 185 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 76/180 (42%), Positives = 126/180 (70%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++N +++M T++ LK ++ T++ GR +PSMLD ++++ YGS PL+Q AN++ EPR+L Sbjct: 6 IKNAEEKMQKTVTVLKSELGTMKAGRANPSMLDKIQIDYYGSMCPLSQAANISSPEPRVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ W+K+++ +E+ I +S+LGLNP +G ++R+ +PE TEE R LVK E+SK Sbjct: 66 MITPWEKQLLKEIEKAILKSDLGLNPSNDGSIIRLVIPELTEETRKDLVKKVKKTGEESK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++R+IRRD D +K +K G SED V E+D+QK TD+ IK+ID +K+KEI+ Sbjct: 126 VAIRSIRRDANDKIKALKKDGDLSEDQVKKGEDDVQKKTDAIIKDIDKIIVDKEKEILAI 185 >gi|152987346|ref|YP_001346870.1| ribosome recycling factor [Pseudomonas aeruginosa PA7] gi|166230818|sp|A6V1D5|RRF_PSEA7 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|150962504|gb|ABR84529.1| ribosome recycling factor [Pseudomonas aeruginosa PA7] Length = 185 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 78/174 (44%), Positives = 109/174 (62%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 ++RMG T+ L +RTGR PS+LD V V YG+ PL QVANVTV + R L ++V Sbjct: 10 QERMGKTLEALGHAFAKIRTGRAHPSILDSVMVSYYGADTPLRQVANVTVEDSRTLALAV 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +DK M+ +VE+ I S+LGLNP G +R+P+P TEE R K A A AE++++SVR Sbjct: 70 FDKSMIQAVEKAIMTSDLGLNPATAGTTIRVPMPALTEETRKGYTKQARAEAEQARVSVR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 NIRRD + LK +K + SED +D+QK+TD I I+ E K+ ++M Sbjct: 130 NIRRDALAQLKDLQKEKEISEDDERRAGDDVQKLTDKFIGEIEKALEAKEADLM 183 >gi|307822433|ref|ZP_07652665.1| ribosome recycling factor [Methylobacter tundripaludum SV96] gi|307736999|gb|EFO07844.1| ribosome recycling factor [Methylobacter tundripaludum SV96] Length = 185 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 74/179 (41%), Positives = 112/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ RM +I LK + +RTGR PS+LD + V YG+ L+QVAN+ V + R L Sbjct: 7 QDASTRMSKSIEALKHEFSKIRTGRAHPSLLDQINVSYYGTESSLSQVANIAVEDARTLT 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++ W+K MV ++E+ I +S+LGLNP G V+RIP+P TEERR +LVKV AE ++ Sbjct: 67 ITPWEKGMVQAIEKAIMKSDLGLNPATNGMVIRIPLPPLTEERRRSLVKVVKNEAENGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD +K++ K SED + E IQK+TD +K+++ E K+ +++ Sbjct: 127 AIRNIRRDANSAIKEALKEKMISEDEARAAEEKIQKLTDQYVKDVEKLLEAKEADLLSM 185 >gi|317046985|ref|YP_004114633.1| ribosome recycling factor [Pantoea sp. At-9b] gi|316948602|gb|ADU68077.1| ribosome recycling factor [Pantoea sp. At-9b] Length = 216 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 77/174 (44%), Positives = 113/174 (64%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM + K + +RTGR SPS+LD + VE YG+ PL Q+A+VTV + R L ++V+D Sbjct: 43 RMDKCVEAFKNTISKVRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFD 102 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + + +VE+ I S+LGLNP G +R+P+P TEERR L+K+ AE+ ++SVRN+ Sbjct: 103 RSLGPAVEKAIMASDLGLNPSSAGSDIRVPLPPLTEERRKDLIKIVRGEAEQGRVSVRNV 162 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD D +K K + SED +++IQK+TD IKN+D+ EK+KE+M F Sbjct: 163 RRDANDKIKALLKDKEISEDDERRAQDEIQKMTDVRIKNVDAALAEKEKELMEF 216 >gi|251793255|ref|YP_003007983.1| ribosome recycling factor [Aggregatibacter aphrophilus NJ8700] gi|247534650|gb|ACS97896.1| ribosome recycling factor [Aggregatibacter aphrophilus NJ8700] Length = 185 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 76/186 (40%), Positives = 118/186 (63%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +NQ+ Q+ ++RM ++ LK + +RTGR PS+LD ++V+ YGS PL Q+ANV Sbjct: 2 INQI--RQDAEERMEKSLEALKGHIAKIRTGRAQPSLLDAIQVDYYGSATPLRQLANVVA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R L V+V+D+ ++ +VE+ I S+LGLNP G +R+P+P TEERR L+K+ A Sbjct: 60 EDARTLAVTVFDRSLIQAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIVKA 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E+ K+++RN+RRD D +K K + SE+ E IQK+TD IK +D +K+ Sbjct: 120 EGEQGKVAIRNVRRDANDKIKALLKDKEISENDQHKAEEVIQKLTDGFIKEVDDVLADKE 179 Query: 181 KEIMHF 186 KE++ F Sbjct: 180 KELLDF 185 >gi|222529797|ref|YP_002573679.1| ribosome recycling factor [Caldicellulosiruptor bescii DSM 6725] gi|312127157|ref|YP_003992031.1| ribosome recycling factor [Caldicellulosiruptor hydrothermalis 108] gi|312621978|ref|YP_004023591.1| ribosome recycling factor [Caldicellulosiruptor kronotskyensis 2002] gi|254809487|sp|B9MKP8|RRF_ANATD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|222456644|gb|ACM60906.1| ribosome recycling factor [Caldicellulosiruptor bescii DSM 6725] gi|311777176|gb|ADQ06662.1| ribosome recycling factor [Caldicellulosiruptor hydrothermalis 108] gi|312202445|gb|ADQ45772.1| ribosome recycling factor [Caldicellulosiruptor kronotskyensis 2002] Length = 184 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 74/179 (41%), Positives = 116/179 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q +++M I LK++ T+R GR +P +LD V V+ YG P+ QVA++TV E RM+ Sbjct: 5 IQVAEEKMKKAIETLKEEFATIRAGRANPHILDKVMVDYYGVPTPIPQVASITVPEARMI 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ W+ M+ +E+ I +S+LG+NP +G+V+R+ PE TEERR LVK AE +K Sbjct: 65 VIQPWEARMLKEIEKAIQKSDLGVNPTNDGKVIRLIFPELTEERRKELVKQVKKMAEDAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +++RNIRR+ +D KK +K+ + +ED + E D+QK+ D I+ I+ K+KEIM Sbjct: 125 VAIRNIRREALDEYKKMKKNNEITEDDLKDAEEDVQKLHDKYIEQIEKLLSAKEKEIME 183 >gi|255325237|ref|ZP_05366343.1| ribosome recycling factor [Corynebacterium tuberculostearicum SK141] gi|311739711|ref|ZP_07713546.1| ribosome recycling factor [Corynebacterium pseudogenitalium ATCC 33035] gi|255297802|gb|EET77113.1| ribosome recycling factor [Corynebacterium tuberculostearicum SK141] gi|311305527|gb|EFQ81595.1| ribosome recycling factor [Corynebacterium pseudogenitalium ATCC 33035] Length = 185 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 71/175 (40%), Positives = 115/175 (65%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 ++ M ++ ++ ++T+RTGR +P+M + + E YG P+ Q+A ++V EPRML++ Sbjct: 10 EEHMTASVEHTREQLVTIRTGRANPTMFNGLVAEYYGVPTPITQMATISVPEPRMLLIKP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +++ M+ +E I S+LG+NP +GQVLR+ VP+ TEERR +VK+A + E KI++R Sbjct: 70 YEQSMIHEIENSIRNSDLGVNPTNDGQVLRVTVPQLTEERRKEMVKLAKSKGEDGKIAIR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 NIRR M+ LKK +K G A ED V + E +++KIT I+ +D E K+ E+M Sbjct: 130 NIRRKAMEQLKKLQKDGDAGEDEVIAAEKEMEKITSGYIEQVDKLVENKENELME 184 >gi|270160174|ref|ZP_06188830.1| ribosome recycling factor [Legionella longbeachae D-4968] gi|289165053|ref|YP_003455191.1| Ribosome recycling factor [Legionella longbeachae NSW150] gi|269988513|gb|EEZ94768.1| ribosome recycling factor [Legionella longbeachae D-4968] gi|288858226|emb|CBJ12094.1| Ribosome recycling factor [Legionella longbeachae NSW150] Length = 185 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 79/179 (44%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ + RM TI L+ DM +RTGR + +LD V+V+ YG+ PL+QVANVT + R ++ Sbjct: 7 QDSERRMKKTIEALRIDMSKIRTGRANVGLLDHVQVDYYGNLTPLSQVANVTASDSRTIL 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+ W+K MV+++E+ I S+LGLNP G +R+P+P TEERR L+KV AE+ K+ Sbjct: 67 VTPWEKSMVSAIEKAILTSDLGLNPATTGNAIRVPMPPLTEERRKELIKVVRNEAEQGKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RNIRRD + LK K SED IQK+TD I +D+ EK+K++M Sbjct: 127 SIRNIRRDANNQLKDLVKDKSISEDDERRAAEAIQKLTDKYILEVDALLAEKEKDLMEV 185 >gi|104783192|ref|YP_609690.1| ribosome recycling factor [Pseudomonas entomophila L48] gi|122402174|sp|Q1I629|RRF_PSEE4 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|95112179|emb|CAK16906.1| ribosome releasing factor [Pseudomonas entomophila L48] Length = 185 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 76/177 (42%), Positives = 117/177 (66%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RMG +I L +++ ++RTGR PS+LD VKV A+GS +PLNQVA +TV + R L Sbjct: 7 KDAQERMGKSIEALGRNLASIRTGRAHPSILDSVKVPAWGSDMPLNQVAAITVEDARTLK 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + DK + A++E+ I S+LGLNP G +R+P+P TEE R K A + AE +K+ Sbjct: 67 IVAHDKNLSAAIEKAILTSDLGLNPSSAGTTIRVPMPALTEETRKGYTKQASSVAEDAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +VRN+RRD + LKK K + SED ++IQK+TD + ID+ F+ K+K+++ Sbjct: 127 AVRNVRRDALADLKKLTKDKEISEDEERRAADEIQKLTDKFVAEIDAAFKAKEKDLL 183 >gi|206560450|ref|YP_002231214.1| ribosome recycling factor [Burkholderia cenocepacia J2315] gi|238693109|sp|B4ECM8|RRF_BURCJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|198036491|emb|CAR52388.1| ribosome recycling factor [Burkholderia cenocepacia J2315] Length = 186 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 74/177 (41%), Positives = 114/177 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++ +M +I K D+ +RTGR +LD V+V+ YGS VP++QVAN+T+++ R + Sbjct: 8 KGVEQKMQRSIEAFKNDLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVANLTLVDARTIG 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K MVA VE+ I E++LGLNP G ++R+P+P TEERR L KV + E +K+ Sbjct: 68 VQPWEKNMVAKVEKAIREADLGLNPATAGDLIRVPMPALTEERRRELTKVVKSEGETAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++RN+RRD + LKK K + SED +D+QK+TD + +D + K+ EIM Sbjct: 128 AIRNLRRDANEALKKLVKDKEISEDDERRASDDVQKLTDKHVAEVDKLVQTKEAEIM 184 >gi|116792732|gb|ABK26473.1| unknown [Picea sitchensis] Length = 279 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 78/173 (45%), Positives = 114/173 (65%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 +RM T+ +K + ++RTGR SP+ LD V+VE YGS V L +A V+V + L+V + Sbjct: 105 ERMEKTLETIKTNFNSIRTGRASPAFLDRVEVEYYGSPVNLKSLAQVSVPDGGTLLVQPY 164 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 DK + S+E+ I +SNLGL P +G V+R+ +P+ T ERR L+KV AE+ KI++RN Sbjct: 165 DKSSLKSIEKAISKSNLGLTPSNDGNVIRLSIPQLTSERRKELLKVVAKIAEEGKIAIRN 224 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 IRRD + +K K K SED V L D+QK+TD IK +DS +++K+KE+M Sbjct: 225 IRRDAIKAYEKLEKEKKLSEDNVKDLSGDLQKVTDEFIKKVDSLYKQKEKELM 277 >gi|296387840|ref|ZP_06877315.1| ribosome recycling factor [Pseudomonas aeruginosa PAb1] Length = 185 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 78/174 (44%), Positives = 109/174 (62%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 ++RMG T+ L +RTGR PS+LD V V YG+ PL QVANVTV + R L ++V Sbjct: 10 QERMGKTLEALGHAFAKIRTGRAHPSILDSVMVSYYGADTPLRQVANVTVEDSRTLALAV 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +DK M+ +VE+ I S+LGLNP G +R+P+P TEE R K A A AE++++SVR Sbjct: 70 FDKSMIQAVEKAIMTSDLGLNPATAGTTIRVPMPGLTEETRKGYTKQARAEAEQARVSVR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 NIRRD + LK +K + SED +D+QK+TD I I+ E K+ ++M Sbjct: 130 NIRRDALAQLKDLQKEKEISEDEERRAGDDVQKLTDKFIGEIEKALEAKEADLM 183 >gi|77919514|ref|YP_357329.1| ribosome recycling factor [Pelobacter carbinolicus DSM 2380] gi|123573931|sp|Q3A398|RRF_PELCD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|77545597|gb|ABA89159.1| ribosome recycling factor [Pelobacter carbinolicus DSM 2380] Length = 185 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 75/173 (43%), Positives = 110/173 (63%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M + LKKDM +RTGR S S+LD V V+ YG+ PLNQV + V EPR++ + W+K Sbjct: 13 MDKAVESLKKDMTKVRTGRASTSLLDDVMVDYYGTPTPLNQVGTLAVPEPRLITIQPWEK 72 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 +++A +ER I +++LGLNP +G ++R+ +P TEERR + KV E +K+ VR+ R Sbjct: 73 KLLADIERAIFKADLGLNPTSDGNLIRLVIPPMTEERRKEMGKVVRKMGEDAKVGVRSAR 132 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RD D +KK K+ + SED + E +IQ +TDS + ID +K+KEIM Sbjct: 133 RDANDGMKKLEKNKEISEDDLKRGEKEIQDVTDSYVAKIDDLVSQKEKEIMEI 185 >gi|16800419|ref|NP_470687.1| ribosome recycling factor [Listeria innocua Clip11262] gi|22001944|sp|Q92C40|RRF_LISIN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|16413824|emb|CAC96582.1| frr [Listeria innocua Clip11262] Length = 185 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 76/180 (42%), Positives = 121/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K++M L + + T+R GR + S+LD + V+ YG+ P+NQ+A+++V E RML Sbjct: 6 LSKSKEKMEKAEQALTRQLGTIRAGRANASLLDRLTVDYYGAATPVNQMASISVPEARML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK ++ +E+ I +S+LGL P +G VLR+ +P+ TEERR LVK AE++K Sbjct: 66 LITPYDKTILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRR+ + LKK K+G +ED + S D+QK+TD +IKNIDS ++K+ EI+ Sbjct: 126 VAVRNIRREANEDLKKLEKNGDITEDDLRSYGEDVQKLTDESIKNIDSITKDKEAEILEV 185 >gi|223937597|ref|ZP_03629500.1| ribosome recycling factor [bacterium Ellin514] gi|223893760|gb|EEF60218.1| ribosome recycling factor [bacterium Ellin514] Length = 186 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 72/178 (40%), Positives = 117/178 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M T ++ + +RTG+ SPS+++ + VE YGS + + ++A +T EPRML Sbjct: 7 LLETEEKMIKTEEVVQHEFSGVRTGKASPSLVENILVEVYGSQMRIRELAGITTPEPRML 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WD V +E+ I +SNLGLNP V+ + +RI +P+ ++ERR +KV AE + Sbjct: 67 LIQPWDAGTVHPIEKAIQKSNLGLNPAVDKKFIRIVLPDLSQERRQEFIKVVKKMAEDGR 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++R++RRDGM+ LKK K+G +ED+V E +IQK+TDS I ID +K+KEI+ Sbjct: 127 VAIRHVRRDGMEALKKEEKAGGVTEDLVEGAEKEIQKLTDSYIAKIDGHLAQKEKEIL 184 >gi|325519183|gb|EGC98648.1| ribosome recycling factor [Burkholderia sp. TJI49] Length = 186 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 75/177 (42%), Positives = 113/177 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++ +M +I K D+ +RTGR +LD V+V+ YGS VP++QVAN+T+++ R + Sbjct: 8 KGVEQKMQRSIEAFKNDLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVANLTLVDARTIG 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K MVA VE+ I E++LGLNP G ++R+P+P TEERR L KV E +K+ Sbjct: 68 VQPWEKNMVAKVEKAIREADLGLNPATAGDLIRVPMPALTEERRRELTKVVKGEGETAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++RN+RRD + LKK K + SED +D+QK+TD + ID + K+ EIM Sbjct: 128 AIRNLRRDANEALKKLVKDKEISEDDERRAGDDVQKLTDKHVAEIDKLVQTKEAEIM 184 >gi|121608413|ref|YP_996220.1| ribosome recycling factor [Verminephrobacter eiseniae EF01-2] gi|166231526|sp|A1WHU5|RRF_VEREI RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|121553053|gb|ABM57202.1| ribosome recycling factor [Verminephrobacter eiseniae EF01-2] Length = 186 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 73/174 (41%), Positives = 113/174 (64%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM +I+ + ++ +RTGR +P++LD V+V+ YG+ VPL+QVANV +++ R + V W+ Sbjct: 13 RMDQSIAAFRNNLQKIRTGRANPALLDAVQVDYYGALVPLSQVANVALIDARTISVQPWE 72 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K M A +E+ I +S+LGLNP G ++R+P+P ++ERR + K+A E +KI+VRN+ Sbjct: 73 KGMGAKIEKAIRDSDLGLNPAAMGDLIRVPMPPMSQERRKEMTKLARNEGESAKIAVRNL 132 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD + +KK K ASED E ++QK TD I ID+ K++EIM Sbjct: 133 RRDANESIKKLVKDKLASEDEQKRAETEVQKFTDKHIAEIDALVAAKEQEIMAL 186 >gi|284048715|ref|YP_003399054.1| ribosome recycling factor [Acidaminococcus fermentans DSM 20731] gi|283952936|gb|ADB47739.1| ribosome recycling factor [Acidaminococcus fermentans DSM 20731] Length = 187 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 75/174 (43%), Positives = 115/174 (66%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 +++M + L+ ++ +RTGR +PS+LD VKV+ YG+ P+ QVANV+V EPRM+V+ Sbjct: 12 QEKMDKALHALRNELTNIRTGRATPSLLDQVKVDYYGAPTPVTQVANVSVPEPRMIVIQP 71 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 WD+ ++ +E+ I S+LGLNP +G V+R+ +P TEERR LVKV + E S++ +R Sbjct: 72 WDRSLLKVIEKAIMTSDLGLNPNNDGTVIRLNLPLLTEERRKELVKVVNKKGEASRVEIR 131 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 NIRRD D +KK K+ + +ED + QK+TD +K ID +K+KE+M Sbjct: 132 NIRRDFNDAVKKQVKAKEITEDDAKDATDFSQKLTDKFMKKIDDVLAQKEKEVM 185 >gi|302872259|ref|YP_003840895.1| ribosome recycling factor [Caldicellulosiruptor obsidiansis OB47] gi|312135566|ref|YP_004002904.1| ribosome recycling factor [Caldicellulosiruptor owensensis OL] gi|312793072|ref|YP_004025995.1| ribosome recycling factor [Caldicellulosiruptor kristjanssonii 177R1B] gi|302575118|gb|ADL42909.1| ribosome recycling factor [Caldicellulosiruptor obsidiansis OB47] gi|311775617|gb|ADQ05104.1| ribosome recycling factor [Caldicellulosiruptor owensensis OL] gi|312180212|gb|ADQ40382.1| ribosome recycling factor [Caldicellulosiruptor kristjanssonii 177R1B] Length = 184 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 74/179 (41%), Positives = 116/179 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q +++M I LK++ T+R GR +P +LD V V+ YG P+ QVA++TV E RM+ Sbjct: 5 IQVAEEKMKKAIETLKEEFATVRAGRANPHILDKVMVDYYGVPTPIPQVASITVPEARMI 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ W+ M+ +E+ I +S+LG+NP +G+V+R+ PE TEERR LVK AE +K Sbjct: 65 VIQPWEARMLKEIEKAIQKSDLGVNPTNDGKVIRLIFPELTEERRKELVKQVKKMAEDAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +++RNIRR+ +D KK +K+ + +ED + E D+QK+ D I+ I+ K+KEIM Sbjct: 125 VAIRNIRREALDEYKKMKKNNEITEDDLKDAEEDVQKLHDKYIEQIEKLLSAKEKEIME 183 >gi|299534751|ref|ZP_07048081.1| ribosome recycling factor [Lysinibacillus fusiformis ZC1] gi|298729839|gb|EFI70384.1| ribosome recycling factor [Lysinibacillus fusiformis ZC1] Length = 185 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 72/179 (40%), Positives = 119/179 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ K++M TI+ +++ ++R GR + S+LD + V+ YG+ P+NQ+A V++ E R+L Sbjct: 6 LEQAKEKMNKTIAAFSRELASIRAGRANASLLDRISVDYYGAATPINQLAGVSIPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V++ +DK ++ +E+ I +S++G+ P +G V+R+ +P TEERR LVK AE +K Sbjct: 66 VITPYDKSILGDIEKAIMKSDIGITPTNDGSVIRLMIPALTEERRKDLVKQVKKEAEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 I+VRN+RRD D LKK K+G+ +ED + DIQK+TD I +D ++K+KEI+ Sbjct: 126 IAVRNVRRDANDDLKKLEKAGEITEDDLRGYGEDIQKLTDEFIVKVDQVAKDKEKEILE 184 >gi|238787232|ref|ZP_04631031.1| Ribosome-recycling factor [Yersinia frederiksenii ATCC 33641] gi|238724494|gb|EEQ16135.1| Ribosome-recycling factor [Yersinia frederiksenii ATCC 33641] Length = 185 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 74/174 (42%), Positives = 114/174 (65%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM + + + +RTGR SPS+LD ++VE YG+ PL Q+AN+ V + R L ++V+D Sbjct: 12 RMEKCLEVFQSHISKIRTGRASPSILDGIQVEYYGTATPLRQLANIIVEDSRTLALTVFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + + A+VE+ I S+LGLNP G V+R+P+P TEERR L+KV A AE+ ++S+RN+ Sbjct: 72 RSLSAAVEKAIMTSDLGLNPSSAGTVIRVPLPALTEERRKDLIKVVRAEAEQGRVSIRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD + +K K + SED +++IQK+TD+ IK +D+ K+ E+M F Sbjct: 132 RRDANEKVKALLKDKEISEDEDRRSQDEIQKLTDAFIKKVDAALAAKETELMDF 185 >gi|313679984|ref|YP_004057723.1| ribosome recycling factor [Oceanithermus profundus DSM 14977] gi|313152699|gb|ADR36550.1| ribosome recycling factor [Oceanithermus profundus DSM 14977] Length = 185 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 72/178 (40%), Positives = 117/178 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + ++ M T+ + ++ TLRTGR +P++L+ +KV+ YGS +PLNQ+A+++ + R L Sbjct: 6 FKETREHMQKTLEVFESNLATLRTGRANPALLEHIKVDYYGSMMPLNQLASISAPDARTL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV WD+ + +E+ I +S+LGLNP +G L I +P T ERR +VK AH YAE+++ Sbjct: 66 VVQAWDQNALPLIEKAIRDSDLGLNPNNQGDTLFINIPALTAERRKEIVKAAHNYAEEAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++VRNIRRD + +KK + ED V E ++Q++TD I+ I++ E K+KEI+ Sbjct: 126 VAVRNIRRDALHRIKKMSEEEHLPEDDVKRAEKEVQELTDEFIEKINAELEAKEKEIL 183 >gi|307729334|ref|YP_003906558.1| ribosome recycling factor [Burkholderia sp. CCGE1003] gi|307583869|gb|ADN57267.1| ribosome recycling factor [Burkholderia sp. CCGE1003] Length = 186 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 76/172 (44%), Positives = 111/172 (64%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M +I K D+ +RTGR +LD ++ + YGS VP++QVAN+T+++ R + V W+ Sbjct: 13 KMQRSIDAFKNDLSKIRTGRAHTGLLDHIQCDYYGSPVPISQVANLTLIDARTIGVQPWE 72 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K+MV VE+ I ES+LGLNP +G V+R+P+P TEERR L KV + AE +K++VRN+ Sbjct: 73 KKMVPVVEKAIRESDLGLNPATQGDVIRVPMPALTEERRRELTKVVKSEAETAKVAVRNL 132 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD + LKK K + SED +D+QK+TD + ID K+ EIM Sbjct: 133 RRDANEQLKKLVKDKEISEDDERRAGDDVQKLTDRFVAEIDKLVATKEAEIM 184 >gi|291166148|gb|EFE28194.1| ribosome recycling factor [Filifactor alocis ATCC 35896] Length = 185 Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 74/177 (41%), Positives = 112/177 (63%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 ++D+M TIS LK+++ +R GR +P+MLD + V+ YGS PL Q+A ++ +PR +V+ Sbjct: 9 LEDKMTKTISVLKEELSVIRAGRANPAMLDKISVDYYGSQTPLKQMAGISSPDPRTIVIQ 68 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 WDK + +E+ I S+LG NP +G+V+RI +P+ TEERR LVK+ E+SK+++ Sbjct: 69 PWDKTALKEIEKAILASDLGFNPSNDGEVIRINIPQLTEERRKELVKLVSKTGEQSKVAL 128 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RN RRD D +KK K G+ ED +++Q I D K IDS +K+ EIM Sbjct: 129 RNARRDTNDKIKKIEKDGELGEDDAKKALDEVQHIIDKYTKEIDSVVAKKEAEIMEI 185 >gi|269792356|ref|YP_003317260.1| ribosome recycling factor [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099991|gb|ACZ18978.1| ribosome recycling factor [Thermanaerovibrio acidaminovorans DSM 6589] Length = 185 Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 68/179 (37%), Positives = 121/179 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +K + TI LK ++ +RTGR P++++ +KV+ +G+ P+ Q+ VTV EPR L Sbjct: 6 IKEMKQKTEKTIEHLKGTLLGIRTGRAHPALVEEIKVDYFGTMTPIKQMGTVTVPEPRQL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V++ WDK + ++E+ I S+LG+ P +G+ +R+ +PE T+ERR L K+ + YAE+++ Sbjct: 66 VITPWDKSALKAIEKAIQSSSLGVTPKTDGESVRVVLPELTKERRQELSKLVNKYAEEAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +++RN+RRD ++ KK K+G+ SED L+ ++Q D IK +D+ +EK+KEI++ Sbjct: 126 VAIRNVRRDVLEAFKKMEKAGEISEDEHKKLQKEVQDHVDGAIKKVDALAQEKEKEILN 184 >gi|23099044|ref|NP_692510.1| ribosome recycling factor [Oceanobacillus iheyensis HTE831] gi|33301568|sp|Q8EQV0|RRF_OCEIH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|22777272|dbj|BAC13545.1| ribosome recycling factor [Oceanobacillus iheyensis HTE831] Length = 185 Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 71/180 (39%), Positives = 117/180 (65%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 +L+ ++ +M + L K++ ++R GR +PS+LD V V+ YG+ PLNQ+A+V E R+ Sbjct: 5 ELKEMEQKMEQAVQALSKNLASVRAGRANPSILDSVFVDYYGASTPLNQLASVGAPEARL 64 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 L ++ +DK + +E+ I +++LGL+P +G ++RI +P T+ERR LVKV Y+E++ Sbjct: 65 LTITPYDKSAIGDIEKAIQKADLGLSPSSDGNIIRINIPALTQERRKDLVKVVGKYSEEA 124 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 K+ +RNIRRD D LKK K+G +ED + ++D+Q T+ I ID + K+ EIM Sbjct: 125 KVQIRNIRRDTNDQLKKMEKNGDLTEDDLRGFQDDVQTSTNDYINKIDQLAKNKENEIME 184 >gi|256544891|ref|ZP_05472262.1| ribosome recycling factor [Anaerococcus vaginalis ATCC 51170] gi|256399390|gb|EEU12996.1| ribosome recycling factor [Anaerococcus vaginalis ATCC 51170] Length = 185 Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 71/158 (44%), Positives = 102/158 (64%) Query: 28 LRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESN 87 +R GR + S+LD + YG+ P+NQ A ++ EPR+LV+ WDK + +E+ I++S+ Sbjct: 27 IRAGRANDSILDGITFSYYGTQTPINQAATISTPEPRLLVIKPWDKSNIKEIEKAINKSD 86 Query: 88 LGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSG 147 LG+NP +G+V+R+P P TEERR L K Y+E SKI +RNIRRD MD KK+ KS Sbjct: 87 LGINPQNDGEVIRLPFPALTEERRKELTKQVSEYSEDSKIQIRNIRRDSMDIAKKAEKSA 146 Query: 148 KASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +ED + S+E DIQKIT I ++ E K KE++ Sbjct: 147 DLTEDDLFSIEEDIQKITKKYIDKVEKTVESKNKELLE 184 >gi|170768435|ref|ZP_02902888.1| ribosome releasing factor [Escherichia albertii TW07627] gi|170122539|gb|EDS91470.1| ribosome releasing factor [Escherichia albertii TW07627] Length = 185 Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 75/174 (43%), Positives = 113/174 (64%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM + K + +RTGR SPS+LD + VE YG+ PL Q+A+VTV + R L ++V+D Sbjct: 12 RMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + M A+VE+ I S+LGLNP G +R+P+P TEERR L K+ AE+++++VRN+ Sbjct: 72 RSMSAAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD D +K K + SED ++D+QK+TD+ IK I++ +K+ E+M F Sbjct: 132 RRDANDKVKALLKEKEISEDDDRRSQDDVQKLTDAAIKKIEAALADKEAELMQF 185 >gi|157372022|ref|YP_001480011.1| ribosome recycling factor [Serratia proteamaculans 568] gi|166991559|sp|A8GIE3|RRF_SERP5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|157323786|gb|ABV42883.1| ribosome recycling factor [Serratia proteamaculans 568] Length = 185 Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 75/174 (43%), Positives = 115/174 (66%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM ++ K + +RTGR SPS+LD + VE YG+ PL Q+A+VTV + R L ++V+D Sbjct: 12 RMEKSVEAFKNQISKIRTGRASPSILDGIMVEYYGASTPLRQLASVTVEDSRTLKINVFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + + A+VE+ I S+LGLNP G +R+P+P TEERR L+K+ AE+ +++VRN+ Sbjct: 72 RSISAAVEKAIMSSDLGLNPSSAGSDIRVPLPALTEERRKDLIKIVRNEAEQGRVAVRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD D +K K + SED ++D+QK+TD+ IK +D+ +K+KE+M F Sbjct: 132 RRDANDKVKALLKDKEISEDEDRRSQDDVQKLTDAYIKLLDAALADKEKELMEF 185 >gi|313619142|gb|EFR90928.1| ribosome recycling factor [Listeria innocua FSL S4-378] Length = 176 Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 75/176 (42%), Positives = 120/176 (68%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K++M L + + T+R GR + S+LD + V+ YG+ P+NQ+A+++V E RML+++ Sbjct: 1 KEKMEKAEQALTRQLGTIRAGRANASLLDRLTVDYYGAATPVNQMASISVPEARMLLITP 60 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +DK ++ +E+ I +S+LGL P +G VLR+ +P+ TEERR LVK AE++K++VR Sbjct: 61 YDKTILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAKVAVR 120 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 NIRR+ + LKK K+G +ED + S D+QK+TD +IKNIDS ++K+ EI+ Sbjct: 121 NIRREANEDLKKLEKNGDITEDDLRSYGEDVQKLTDESIKNIDSITKDKEAEILEV 176 >gi|300858728|ref|YP_003783711.1| ribosome-recycling factor [Corynebacterium pseudotuberculosis FRC41] gi|300686182|gb|ADK29104.1| ribosome-recycling factor [Corynebacterium pseudotuberculosis FRC41] gi|302206435|gb|ADL10777.1| Ribosome-recycling factor (RRF) [Corynebacterium pseudotuberculosis C231] gi|302330991|gb|ADL21185.1| ribosome recycling factor [Corynebacterium pseudotuberculosis 1002] gi|308276677|gb|ADO26576.1| ribosome recycling factor [Corynebacterium pseudotuberculosis I19] Length = 185 Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 72/176 (40%), Positives = 112/176 (63%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 ++ MG T+ + D++ +RTGR +P+M + V + YG P+ Q+A ++V E RML++ Sbjct: 10 EEHMGTTVERTRDDLVNIRTGRANPAMFNGVIADYYGVPTPITQMATISVPEARMLLIKP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 ++ M+ +E I S+LG+NP +GQVLR+ VP+ TEERR +VKVA + E KI++R Sbjct: 70 YEMSMMGEIENAIRNSDLGVNPTNDGQVLRVTVPQLTEERRKEMVKVAKSKGEDGKIAIR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 N+RR GMD LKK +K G A ED V + E ++ KIT + +D +K+ E+M Sbjct: 130 NVRRKGMDQLKKIQKDGDAGEDEVQAAEKELDKITAKYVAQVDEVVSKKEAELMEV 185 >gi|161524433|ref|YP_001579445.1| ribosome recycling factor [Burkholderia multivorans ATCC 17616] gi|189350812|ref|YP_001946440.1| ribosome recycling factor [Burkholderia multivorans ATCC 17616] gi|221198319|ref|ZP_03571365.1| ribosome recycling factor [Burkholderia multivorans CGD2M] gi|221208258|ref|ZP_03581262.1| ribosome recycling factor [Burkholderia multivorans CGD2] gi|221215460|ref|ZP_03588424.1| ribosome recycling factor [Burkholderia multivorans CGD1] gi|238687071|sp|A9AIL7|RRF_BURM1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|160341862|gb|ABX14948.1| ribosome recycling factor [Burkholderia multivorans ATCC 17616] gi|189334834|dbj|BAG43904.1| ribosome recycling factor [Burkholderia multivorans ATCC 17616] gi|221164644|gb|EED97126.1| ribosome recycling factor [Burkholderia multivorans CGD1] gi|221171906|gb|EEE04349.1| ribosome recycling factor [Burkholderia multivorans CGD2] gi|221182251|gb|EEE14652.1| ribosome recycling factor [Burkholderia multivorans CGD2M] Length = 186 Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 75/177 (42%), Positives = 113/177 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++ +M +I K D+ +RTGR +LD V+V+ YGS VP++QVAN+T+++ R + Sbjct: 8 KGVEQKMQRSIEAFKNDLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVANLTLVDARTIG 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K MVA VE+ I E++LGLNP G ++R+P+P TEERR L KV E +K+ Sbjct: 68 VQPWEKNMVAKVEKAIREADLGLNPATAGDLIRVPMPPLTEERRRELTKVVKGEGETAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++RN+RRD + LKK K + SED +D+QK+TD + ID + K+ EIM Sbjct: 128 AIRNLRRDANEALKKLVKDKEISEDDERRAGDDVQKLTDKHVAEIDKLVQTKEAEIM 184 >gi|225848029|ref|YP_002728192.1| ribosome recycling factor [Sulfurihydrogenibium azorense Az-Fu1] gi|225643308|gb|ACN98358.1| ribosome recycling factor [Sulfurihydrogenibium azorense Az-Fu1] Length = 184 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 70/178 (39%), Positives = 120/178 (67%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ + RM ++ K+++ +RTGR S +++ +KV+ YGS +PL Q+A ++ EP + Sbjct: 6 LKEAEKRMKGAVAKFKEELTGIRTGRASTGLVENIKVDYYGSEIPLKQLATISTPEPSQI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK V S+E+ + E+NLG NP EG +R+ +P TEERR +VK+ H +AE+++ Sbjct: 66 VIQTWDKSAVKSIEKALIEANLGANPQTEGNTIRLNLPPMTEERRKEVVKIIHKFAEEAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++VRN+RRD ++++K +K G + +D+ +LE +QK+TD I+ I+ E K+KEI+ Sbjct: 126 VAVRNVRRDEKENIEKLKKEGFSEDDVKKALEK-LQKLTDKYIEEINQLAEAKEKEIL 182 >gi|221632994|ref|YP_002522217.1| ribosome recycling factor [Thermomicrobium roseum DSM 5159] gi|254809539|sp|B9L003|RRF_THERP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|221155498|gb|ACM04625.1| ribosome recycling factor [Thermomicrobium roseum DSM 5159] Length = 185 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 73/180 (40%), Positives = 118/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ + RM +I L++++ +R GR +PS+L+ ++V YG+ PLNQ+A ++ E R+L Sbjct: 6 LRDAEQRMKKSIELLRQELAGIRAGRAAPSLLEHLEVNYYGTPTPLNQLATISAPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV VWD+ V++VE+ I +S LGLNP V+GQ LRI +P TEERR LVK+ H E++K Sbjct: 66 VVQVWDRNAVSAVEKAIRQSELGLNPSVDGQTLRIQLPPLTEERRRQLVKLVHEEVEETK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD + +K+ K+ + SED E +Q +T+ I D ++K+ +I+ Sbjct: 126 VAIRNIRRDALADIKELLKNKEISEDDERRAEQRLQDLTNRYIAEADKLGKQKEHDILEI 185 >gi|48474737|sp|Q8VS52|RRF_LACRE RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|18139798|gb|AAL60144.1|AF401482_3 ribosome recycling factor [Lactobacillus reuteri] Length = 186 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 75/178 (42%), Positives = 118/178 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L KD+M + L++ + +R GR + S+L+ VKV+ YG+ PLNQVA++T+ E R L Sbjct: 8 LNEAKDKMAKSGDALRRTLADIRAGRANASLLNGVKVDYYGAPTPLNQVASITIPEARQL 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +D+ + ++E+ I+ +NLGL P +G +RI +P+ TEERR LVK A EK+K Sbjct: 68 LVTPYDESSLDNIEKAIYAANLGLTPQNDGSAIRILIPQLTEERRKELVKDVKAELEKAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++VRN+RR+ MD LKK K G ++D LE +Q TD+ IKN+++ +K+KE+M Sbjct: 128 VAVRNVRREAMDDLKKGNKDGDFNDDEFHDLEKKVQTETDNGIKNLENIAADKEKELM 185 >gi|302386239|ref|YP_003822061.1| ribosome recycling factor [Clostridium saccharolyticum WM1] gi|302196867|gb|ADL04438.1| ribosome recycling factor [Clostridium saccharolyticum WM1] Length = 184 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 76/178 (42%), Positives = 115/178 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 LQ +D+M T+ L+ + MT+R GR +P +LD ++V+ YG+ P+ QV NV++ E RM+ Sbjct: 5 LQVYEDKMNKTLKALENEFMTIRAGRANPHVLDKIRVDYYGTPTPIQQVGNVSIPEARMI 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ W+K ++ ++E+ I S LG+NP +G V+R+ PE TEERR LVK E +K Sbjct: 65 VIQPWEKSLLKAIEKAILTSELGINPTNDGNVIRLVFPELTEERRKDLVKDVKKKGEAAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 I++RNIRRD D KK K+ + SED A E+ IQK+TD I ++ EEK K+++ Sbjct: 125 IAIRNIRRDANDAFKKQLKAEEISEDEQAEAEDQIQKLTDKMIDKVEKSVEEKSKDLL 182 >gi|228470918|ref|ZP_04055763.1| ribosome recycling factor [Porphyromonas uenonis 60-3] gi|228307315|gb|EEK16329.1| ribosome recycling factor [Porphyromonas uenonis 60-3] Length = 186 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 75/171 (43%), Positives = 112/171 (65%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M I FL+ + +R G+ +P +LD + VEAYG+ +PLNQVA VTV + R L ++ WDK Sbjct: 14 MLKAIEFLQDKLDRIRAGKANPVLLDDITVEAYGAPMPLNQVATVTVPDARTLAITPWDK 73 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 +++ +E+GI +S+LG+ P G+++RI +P TEERR LVK + A +E++KIS+RN R Sbjct: 74 KLIKDIEKGILDSSLGITPTNNGEMIRITMPPLTEERRKELVKQSKAESEEAKISIRNAR 133 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RD +D KK+ K+ ED + END QK+ D I ++ K+KEIM Sbjct: 134 RDAIDAAKKAVKAEDLPEDTIKQTENDAQKLHDKYIARVEEALAAKEKEIM 184 >gi|255524238|ref|ZP_05391197.1| ribosome recycling factor [Clostridium carboxidivorans P7] gi|296185359|ref|ZP_06853769.1| ribosome recycling factor [Clostridium carboxidivorans P7] gi|255512063|gb|EET88344.1| ribosome recycling factor [Clostridium carboxidivorans P7] gi|296050193|gb|EFG89617.1| ribosome recycling factor [Clostridium carboxidivorans P7] Length = 185 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 72/175 (41%), Positives = 116/175 (66%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 ++M T+ LK+++ +++ GR +P+MLD ++ E YG+ P+NQ+AN++V EPR+L + W Sbjct: 11 EKMNKTVEALKRELASMKAGRANPAMLDKIEAEYYGTMTPINQLANISVPEPRVLAIQPW 70 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 DK ++E+ I +S+LG+NP +G+++R+ + E TEE R +VK E SK++VR+ Sbjct: 71 DKGSFKAIEKAILKSDLGINPSSDGEMIRLVIAELTEETRKNIVKNIKKDGEDSKVAVRS 130 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 IRRD D +K +K SED + E++IQK TD+ IK +D E K+KEIM Sbjct: 131 IRRDCNDKIKVLKKESDISEDEIKKAEDEIQKKTDAFIKQVDKIVEAKEKEIMSL 185 >gi|253580861|ref|ZP_04858124.1| ribosome recycling factor [Ruminococcus sp. 5_1_39B_FAA] gi|251847931|gb|EES75898.1| ribosome recycling factor [Ruminococcus sp. 5_1_39BFAA] Length = 183 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 78/178 (43%), Positives = 114/178 (64%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q +++M T++ L+ +++T+R GR +P +LD + V+ YG+ PL QVAN+TV E RM+ Sbjct: 5 IQKYEEKMKKTLASLESELVTIRAGRANPHILDKLAVDYYGAPTPLQQVANITVPEARMI 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + W+ ++ +E+ I S+LGLNP +G+V+R+ PE TEERR LVK E +K Sbjct: 65 QIQPWESSLIKGIEKAILTSDLGLNPSNDGKVIRLVFPELTEERRKELVKDVKKKGEAAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++VRNIRRD D KK K SED + LE IQK TD IK +D+ + K KEIM Sbjct: 125 VAVRNIRRDANDAFKKLAKQD-VSEDEIKELEEKIQKSTDKYIKEVDAAVDAKSKEIM 181 >gi|332523063|ref|ZP_08399315.1| ribosome recycling factor [Streptococcus porcinus str. Jelinkova 176] gi|332314327|gb|EGJ27312.1| ribosome recycling factor [Streptococcus porcinus str. Jelinkova 176] Length = 185 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 76/183 (41%), Positives = 116/183 (63%), Gaps = 2/183 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 N +ID N R + L ++ ++R GR + S+LD ++V+ YG+ PLNQ++++TV Sbjct: 3 NAIIDKAN--QRFEQSFQSLSREYASIRAGRANASLLDRIQVDYYGAPTPLNQLSSITVP 60 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 E R+L++S +DK + +ER I+ S+LG+ P +G V+R+ +P TEE R L K Sbjct: 61 EARVLLISPFDKNSIKDIERAINASDLGITPANDGSVIRLVIPALTEETRKNLAKEVKKV 120 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 E K+++RNIRRD MD KK K + SED + +LE DIQK TD IK+ID+ EK+K Sbjct: 121 GENQKVAIRNIRRDAMDEAKKQEKDKEISEDELKTLEKDIQKATDDAIKHIDAMTAEKEK 180 Query: 182 EIM 184 E++ Sbjct: 181 ELL 183 >gi|317132574|ref|YP_004091888.1| ribosome recycling factor [Ethanoligenens harbinense YUAN-3] gi|315470553|gb|ADU27157.1| ribosome recycling factor [Ethanoligenens harbinense YUAN-3] Length = 183 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 71/179 (39%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ + +M T++ L+ + T+R GR +P++LD V+V+ YG+ P+NQ+A V+V E R L Sbjct: 5 QDYQVKMTKTVAALESEYGTIRAGRANPAILDKVRVDYYGTPTPINQIAAVSVTEARNLT 64 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + WD + ++E+ I+ S+LG+NP +G+++RI P TEERR LVK Y E +K+ Sbjct: 65 IQPWDITQLRAIEKAIYASDLGVNPQNDGKIIRIAFPPLTEERRKELVKTVRKYGEDAKV 124 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++R+IRRD ++ LK+ +K G+ +ED + E +Q TD K ID +K+KEIM Sbjct: 125 AIRSIRRDAIESLKEQKKGGELTEDDLKDAEKKVQDATDRFCKEIDGIAAKKEKEIMEI 183 >gi|329117138|ref|ZP_08245855.1| ribosome recycling factor [Streptococcus parauberis NCFD 2020] gi|326907543|gb|EGE54457.1| ribosome recycling factor [Streptococcus parauberis NCFD 2020] Length = 185 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 77/184 (41%), Positives = 117/184 (63%), Gaps = 2/184 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 N +I+ N +R + L ++ ++R GR + S+LD ++VE YG+ PLNQ+A++TV Sbjct: 3 NAIIEKAN--ERFQQSHQSLSREYASIRAGRANASLLDRIQVEYYGAPTPLNQLASITVP 60 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 E R+L++S +DK + +ER I+ S+LG+ P +G ++R+ +P TEE R L K Sbjct: 61 EARVLMISPFDKSSIKDIERAINASDLGITPANDGSIIRLVIPALTEETRKELAKEVKKV 120 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 E SKI++RNIRRD MD KK K+ + +ED + SLE DIQK TD IK+ID K+K Sbjct: 121 GESSKIAIRNIRRDAMDDAKKQEKAKEITEDELKSLEKDIQKATDDAIKHIDQMTANKEK 180 Query: 182 EIMH 185 E++ Sbjct: 181 ELLE 184 >gi|227529099|ref|ZP_03959148.1| ribosome recycling factor [Lactobacillus vaginalis ATCC 49540] gi|227350943|gb|EEJ41234.1| ribosome recycling factor [Lactobacillus vaginalis ATCC 49540] Length = 186 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 75/178 (42%), Positives = 118/178 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L KD+M + L++ + +R GR + S+L+ VKV+ YG+ PLNQVA++T+ E R L Sbjct: 8 LDEAKDKMAKSGDALRRTLADIRAGRANASLLNGVKVDYYGAPTPLNQVASITIPEARQL 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +D+ + ++E+ I+ +NLGL P +G +RI +P+ TEERR LVK A EK+K Sbjct: 68 LVTPYDESSLDNIEKAIYAANLGLTPQNDGSAIRILIPQLTEERRKELVKDVKAELEKAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++VRN+RR+ MD LKK K G ++D LE +Q TD+ IKN+++ +K+KE+M Sbjct: 128 VAVRNVRREAMDDLKKGNKDGDFNDDEFHELEKKVQTETDNGIKNLENIAADKEKELM 185 >gi|322420123|ref|YP_004199346.1| ribosome recycling factor [Geobacter sp. M18] gi|320126510|gb|ADW14070.1| ribosome recycling factor [Geobacter sp. M18] Length = 185 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 76/173 (43%), Positives = 111/173 (64%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M TI L+KD +RTGR S S+LD +KV++YG+ PLNQVA + V E R + + WD Sbjct: 13 MDKTIESLRKDYQKVRTGRASTSLLDEIKVDSYGNLSPLNQVATLAVPEARTITIQPWDS 72 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 +M+ +E+ I SNLGLNP +G+++R+ +P TEERR +VK AE+SK+++RNIR Sbjct: 73 KMIQPIEKAIMNSNLGLNPANDGKMIRLTLPPLTEERRKDIVKQLKRDAEESKVALRNIR 132 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RD +D LKK K + SED + E D+Q T++ + ID K+KE++ Sbjct: 133 RDAIDQLKKLEKDKQISEDELKRAEKDVQDSTNAHVAKIDEVLVHKEKEVLEV 185 >gi|300715399|ref|YP_003740202.1| ribosome recycling factor [Erwinia billingiae Eb661] gi|299061235|emb|CAX58344.1| Ribosome recycling factor [Erwinia billingiae Eb661] Length = 185 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 79/174 (45%), Positives = 112/174 (64%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM + K + +RTGR SPS+LD + V+ YGS PL Q+A+VTV + R L ++V+D Sbjct: 12 RMEKCVEAFKNHISKIRTGRASPSILDGIMVDYYGSSTPLRQLASVTVEDSRTLKINVFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + + A+VE+ I S+LGLNP G +R+P+P TEERR L+KV AE+ ++SVRN+ Sbjct: 72 RSISAAVEKAIMTSDLGLNPSSAGSDIRVPLPALTEERRKDLIKVVRGEAEQGRVSVRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD D +K K + SED ++DIQK+TD IK ID+ EK+ E+M F Sbjct: 132 RRDANDKVKALLKDKEISEDDEHRSQDDIQKMTDVFIKKIDTALAEKEAELMDF 185 >gi|255029475|ref|ZP_05301426.1| ribosome recycling factor [Listeria monocytogenes LO28] Length = 182 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 76/177 (42%), Positives = 120/177 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K++M L + + T+R GR + S+LD + V+ YG+ P+NQ+A+++V E RML Sbjct: 6 LSKSKEKMEKAEQALTRQLGTIRAGRANASLLDRLSVDYYGAATPVNQMASISVPEARML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK ++ +E+ I +S+LGL P +G VLR+ +P+ TEERR LVK AE++K Sbjct: 66 LITPYDKTILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 ++VRNIRR+ + LKK K+G +ED + S D+QK+TD +IKNIDS ++K+ EI Sbjct: 126 VAVRNIRREANEELKKLEKNGDITEDDLRSYGEDVQKLTDESIKNIDSITKDKEAEI 182 >gi|138894772|ref|YP_001125225.1| ribosome recycling factor [Geobacillus thermodenitrificans NG80-2] gi|196247605|ref|ZP_03146307.1| ribosome recycling factor [Geobacillus sp. G11MC16] gi|166230789|sp|A4IMC6|RRF_GEOTN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|134266285|gb|ABO66480.1| Ribosome recycling factor [Geobacillus thermodenitrificans NG80-2] gi|196212389|gb|EDY07146.1| ribosome recycling factor [Geobacillus sp. G11MC16] Length = 185 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 72/179 (40%), Positives = 118/179 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q K++M + +++ T+R GR + +L+ V V+ YG P+NQ+A ++V E RML Sbjct: 6 IQQAKEKMDKAVQAFSRELATVRAGRANAGLLEKVTVDYYGVATPINQLATISVPEARML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +DK ++ +E+ I S+LG+ P +G V+R+ +P TEERR L K+ Y+E++K Sbjct: 66 VIQPYDKSVIKEMEKAILASDLGVTPSNDGSVIRLVIPPLTEERRRELAKLVKKYSEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRNIRRD D LKK K+ + +ED + S +++QK+TDS I ID+ +EK+KE+M Sbjct: 126 VAVRNIRRDANDELKKLEKNSEITEDELRSYTDEVQKLTDSHIAKIDAITKEKEKEVME 184 >gi|83749795|ref|ZP_00946769.1| Ribosome Recycling Factor (RRF) [Ralstonia solanacearum UW551] gi|207723357|ref|YP_002253756.1| ribosome recycling factor (ribosome-releasing factor) (rrf) protein [Ralstonia solanacearum MolK2] gi|207743241|ref|YP_002259633.1| ribosome recycling factor (ribosome-releasing factor) (rrf) protein [Ralstonia solanacearum IPO1609] gi|83723552|gb|EAP70756.1| Ribosome Recycling Factor (RRF) [Ralstonia solanacearum UW551] gi|206588556|emb|CAQ35519.1| ribosome recycling factor (ribosome-releasing factor) (rrf) protein [Ralstonia solanacearum MolK2] gi|206594638|emb|CAQ61565.1| ribosome recycling factor (ribosome-releasing factor) (rrf) protein [Ralstonia solanacearum IPO1609] Length = 186 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 75/172 (43%), Positives = 110/172 (63%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M +I K D+ +RTGR +LD V+V+ YGS VP++QVANV + + R + V W+ Sbjct: 13 KMQKSIDAFKADLAKVRTGRAHAGLLDHVQVDYYGSMVPISQVANVGLADARTISVQPWE 72 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K++V++VE+ I E++LGLNP G V+R+P+P TEERR L KV + E +K++VRN+ Sbjct: 73 KKLVSAVEKAIREADLGLNPATMGDVIRVPMPALTEERRKELTKVVKSEGEDAKVAVRNV 132 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD + KK K SED ++D+QK+TD + +D EK KEIM Sbjct: 133 RRDANEQFKKLVKDKAISEDDERRGQDDVQKLTDRFVAEVDKLVAEKDKEIM 184 >gi|15674582|ref|NP_268756.1| ribosome recycling factor [Streptococcus pyogenes M1 GAS] gi|21909863|ref|NP_664131.1| ribosome recycling factor [Streptococcus pyogenes MGAS315] gi|28896442|ref|NP_802792.1| ribosome recycling factor [Streptococcus pyogenes SSI-1] gi|50913751|ref|YP_059723.1| ribosome recycling factor [Streptococcus pyogenes MGAS10394] gi|71910193|ref|YP_281743.1| ribosome recycling factor [Streptococcus pyogenes MGAS5005] gi|94988011|ref|YP_596112.1| ribosome recycling factor [Streptococcus pyogenes MGAS9429] gi|94989890|ref|YP_597990.1| ribosome recycling factor [Streptococcus pyogenes MGAS10270] gi|94991895|ref|YP_599994.1| ribosome recycling factor [Streptococcus pyogenes MGAS2096] gi|94993775|ref|YP_601873.1| ribosome recycling factor [Streptococcus pyogenes MGAS10750] gi|139474297|ref|YP_001129013.1| ribosome recycling factor [Streptococcus pyogenes str. Manfredo] gi|209558949|ref|YP_002285421.1| ribosome recycling factor [Streptococcus pyogenes NZ131] gi|306827884|ref|ZP_07461152.1| ribosome recycling factor [Streptococcus pyogenes ATCC 10782] gi|57014111|sp|P68903|RRF_STRP1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|57014112|sp|P68904|RRF_STRP3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|57014114|sp|Q5XDH3|RRF_STRP6 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166231514|sp|Q1JD58|RRF_STRPB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166231515|sp|Q1JN31|RRF_STRPC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166231516|sp|Q1JI77|RRF_STRPD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166231517|sp|Q1J832|RRF_STRPF RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166231518|sp|A2RG30|RRF_STRPG RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226749943|sp|B5XK64|RRF_STRPZ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|13621691|gb|AAK33477.1| putative ribosome recycling factor [Streptococcus pyogenes M1 GAS] gi|21904050|gb|AAM78934.1| putative ribosome recycling factor [Streptococcus pyogenes MGAS315] gi|28811693|dbj|BAC64625.1| putative ribosome recycling factor [Streptococcus pyogenes SSI-1] gi|50902825|gb|AAT86540.1| Ribosome Recycling Factor [Streptococcus pyogenes MGAS10394] gi|71852975|gb|AAZ50998.1| ribosome recycling factor [Streptococcus pyogenes MGAS5005] gi|94541519|gb|ABF31568.1| ribosome recycling factor (RRF) [Streptococcus pyogenes MGAS9429] gi|94543398|gb|ABF33446.1| Ribosome Recycling Factor (RRF) [Streptococcus pyogenes MGAS10270] gi|94545403|gb|ABF35450.1| Ribosome Recycling Factor (RRF) [Streptococcus pyogenes MGAS2096] gi|94547283|gb|ABF37329.1| Ribosome Recycling Factor (RRF) [Streptococcus pyogenes MGAS10750] gi|134272544|emb|CAM30809.1| ribosome recycling factor [Streptococcus pyogenes str. Manfredo] gi|209540150|gb|ACI60726.1| Ribosome recycling factor [Streptococcus pyogenes NZ131] gi|304429932|gb|EFM32973.1| ribosome recycling factor [Streptococcus pyogenes ATCC 10782] Length = 185 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 73/178 (41%), Positives = 115/178 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+R + L ++ ++R GR + S+LD ++V+ YG+ PLNQ+A++TV E R+L Sbjct: 6 IETAKERFAQSHQSLSREYASIRAGRANASLLDRIQVDYYGAPTPLNQLASITVPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +DK + +ER ++ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LISPFDKSSIKDIERALNASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 I++RNIRRD MD KK K+ + +ED + +LE DIQK TD IK ID EK+KE++ Sbjct: 126 IAIRNIRRDAMDDAKKQEKAKEITEDELKTLEKDIQKATDDAIKEIDRMTAEKEKELL 183 >gi|257066151|ref|YP_003152407.1| ribosome recycling factor [Anaerococcus prevotii DSM 20548] gi|256798031|gb|ACV28686.1| ribosome recycling factor [Anaerococcus prevotii DSM 20548] Length = 186 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 71/174 (40%), Positives = 111/174 (63%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 KD M + K + ++ GR + ++LD + YG+ P+NQ A V++ E R+LV+ Sbjct: 11 KDEMTKALDSFDKRIANIKAGRATEAILDGITFSYYGTETPINQAATVSIPEARLLVIKP 70 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 WDK + +E+ I +SN+G+ P +G+V+R+P P+ TEERR K YAE +KI +R Sbjct: 71 WDKTNIGPIEKAILKSNIGITPQNDGEVIRLPFPQLTEERRKEYTKEVDTYAEDAKIVIR 130 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 N RR+ MD +KKS KSG +ED +LE++IQKITD I+++++ +K KE+M Sbjct: 131 NKRREAMDEVKKSEKSGDITEDDRYTLEDEIQKITDKMIEDVEALASKKNKELM 184 >gi|116627334|ref|YP_819953.1| ribosome recycling factor [Streptococcus thermophilus LMD-9] gi|122268064|sp|Q03M15|RRF_STRTD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|116100611|gb|ABJ65757.1| ribosome recycling factor [Streptococcus thermophilus LMD-9] gi|312277842|gb|ADQ62499.1| Ribosome recycling factor [Streptococcus thermophilus ND03] Length = 185 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 78/178 (43%), Positives = 115/178 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+R T L ++ +R GR + S+LD + VE YG+ PLNQ+A++TV E R+L Sbjct: 6 IEKAKERFAHTHESLAREFGAIRAGRANASLLDRITVEYYGAPTPLNQLASITVPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +DK +A +ER I+ES+LG+NP +G V+R+ +P TEE R L K E +K Sbjct: 66 LISPFDKGSIADIERAINESDLGINPANDGSVIRLVIPALTEETRKELAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 I++RNIRRD MD KK K + +ED + +LE DIQK TD + IDS EK+KE++ Sbjct: 126 IAIRNIRRDAMDEAKKQEKEKEITEDQLKTLEKDIQKATDDAVNKIDSMIAEKEKELL 183 >gi|291519555|emb|CBK74776.1| ribosome recycling factor [Butyrivibrio fibrisolvens 16/4] Length = 173 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 71/171 (41%), Positives = 110/171 (64%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M + + L+ + T+R GR +P +LD + V+ YG+ PL QVAN++V EPR++ + W+ Sbjct: 1 MTKSYNNLESEFTTIRAGRANPHILDKITVDYYGAPTPLQQVANISVPEPRLIQIQPWEP 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 +V +E+ I+ S++G+NP +G+++R+ PE TEERR + K + E +K+++RNIR Sbjct: 61 SLVKEIEKAINMSDIGINPTNDGKLIRLVFPELTEERRKEIAKDVKKHGEDAKVAIRNIR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RD +DHLKK K SED + LE+ QK+TD I +D E K KEIM Sbjct: 121 RDAIDHLKKHSKDEGVSEDEIKDLEDKCQKMTDKFIAEVDKAVEAKTKEIM 171 >gi|113868031|ref|YP_726520.1| ribosome recycling factor [Ralstonia eutropha H16] gi|123329181|sp|Q0KA19|RRF_RALEH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|113526807|emb|CAJ93152.1| Ribosome Recycling Factor (RRF) [Ralstonia eutropha H16] Length = 186 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 75/177 (42%), Positives = 113/177 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++++ +M +I K D+ +RTGR +LD V+V+ YGS VP++QVA V + + R + Sbjct: 8 KSVEQKMQKSIEAFKADLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVAAVGLADARTIT 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K+MV +VE+ I + +LGLNP G+V+R+P+P TEERR L KV AE +K+ Sbjct: 68 VQPWEKKMVGAVEKAIRDCDLGLNPATMGEVIRVPMPALTEERRKELTKVVKGEAEGAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +VRN+RRD + KK K SED ++++QK+TD + ID EK+KEIM Sbjct: 128 AVRNLRRDANEQFKKLVKDKTISEDDERRGQDEVQKLTDKYVAEIDKMVAEKEKEIM 184 >gi|329296134|ref|ZP_08253470.1| ribosome recycling factor [Plautia stali symbiont] Length = 185 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 78/174 (44%), Positives = 113/174 (64%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM + K + +RTGR SPS+LD + VE YG+ PL Q+A+VTV + R L ++V+D Sbjct: 12 RMDKCVEAFKNTISKVRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + M +VE+ I S+LGLNP G +R+P+P TEERR L+KV AE+ ++SVRN+ Sbjct: 72 RSMGPAVEKAIIASDLGLNPSSAGSDIRVPLPALTEERRKDLIKVVRGEAEQGRVSVRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD D +K K + SED +++IQK+TD IK++D+ EK+KE+M F Sbjct: 132 RRDANDKIKALLKDKEISEDDERRSQDEIQKMTDVRIKHVDAALAEKEKELMEF 185 >gi|55820525|ref|YP_138967.1| ribosome recycling factor [Streptococcus thermophilus LMG 18311] gi|55822414|ref|YP_140855.1| ribosome recycling factor [Streptococcus thermophilus CNRZ1066] gi|62900786|sp|Q5M140|RRF_STRT1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|62900787|sp|Q5M5M9|RRF_STRT2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|55736510|gb|AAV60152.1| ribosome recycling factor [Streptococcus thermophilus LMG 18311] gi|55738399|gb|AAV62040.1| ribosome recycling factor [Streptococcus thermophilus CNRZ1066] Length = 185 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 78/178 (43%), Positives = 115/178 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+R T L ++ +R GR + S+LD + VE YG+ PLNQ+A++TV E R+L Sbjct: 6 IEKAKERFAHTHESLAREFGAIRAGRANASLLDRITVEYYGAPTPLNQLASITVPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +DK +A +ER I+ES+LG+NP +G V+R+ +P TEE R L K E +K Sbjct: 66 LISPFDKGSIADIERAINESDLGINPANDGSVIRLVIPALTEETRKELAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 I++RNIRRD MD KK K + +ED + +LE DIQK TD + IDS EK+KE++ Sbjct: 126 IAIRNIRRDAMDEAKKQEKEKEITEDQLKTLEKDIQKATDDAVNKIDSMIAEKEKELL 183 >gi|328950711|ref|YP_004368046.1| Ribosome-recycling factor [Marinithermus hydrothermalis DSM 14884] gi|328451035|gb|AEB11936.1| Ribosome-recycling factor [Marinithermus hydrothermalis DSM 14884] Length = 185 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 74/171 (43%), Positives = 111/171 (64%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M T+ + ++ LRTGR +P++L +KVE YGS +PLNQVA+V+ + R LVV WD+ Sbjct: 13 MQKTVEAFEANLGGLRTGRANPALLAHLKVEYYGSVMPLNQVASVSAPDARTLVVQAWDQ 72 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 + ++E+ I ES+LGLNP G L I +P TEERR + + A YAE+++I+VRN R Sbjct: 73 NALPAIEKAIRESDLGLNPNNRGDALYIQIPPLTEERRKEIARTARGYAEEARIAVRNAR 132 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 R+ +D +KK K SED ++++QKIT+ I ID+ E+K+ EI+ Sbjct: 133 REALDQIKKLEKEKLLSEDEAKRAQDEVQKITNEFIDKIDAILEKKEHEIL 183 >gi|166031004|ref|ZP_02233833.1| hypothetical protein DORFOR_00685 [Dorea formicigenerans ATCC 27755] gi|166029271|gb|EDR48028.1| hypothetical protein DORFOR_00685 [Dorea formicigenerans ATCC 27755] Length = 183 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 77/172 (44%), Positives = 114/172 (66%), Gaps = 1/172 (0%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M T+ L +M T+R GR +P++L+ + V+ YG+ P+ QVANV+V EPRM+ + W+ Sbjct: 11 KMQKTMDSLDSEMGTIRAGRANPNVLNRIMVDYYGTPTPIQQVANVSVPEPRMIQIQPWE 70 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K M+ +E+ I S+LG+NP +G +R+ PE TEERR LVK E +K+++RNI Sbjct: 71 KSMLKVIEKAIMVSDLGINPTNDGTAVRLIFPELTEERRKELVKDVKKKGEAAKVAIRNI 130 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRDG D KK + S SED + +LE+++QK+TD +K IDS E K KE+M Sbjct: 131 RRDGNDAFKKLKGSD-VSEDEIKNLEDELQKMTDKYVKEIDSAVEVKSKEVM 181 >gi|149907550|ref|ZP_01896297.1| ribosome releasing factor [Moritella sp. PE36] gi|149809220|gb|EDM69149.1| ribosome releasing factor [Moritella sp. PE36] Length = 185 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 76/174 (43%), Positives = 112/174 (64%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RMG +I LK + +RTGR PS+L+ + V YG++ PLNQV NV + R L ++V+D Sbjct: 12 RMGKSIDALKSQLSKVRTGRAHPSILNGITVSYYGTNTPLNQVGNVGTEDSRTLSITVFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 MV +VE+ I S+LGLNP G +RIP+P TEERR +L+KV A AE+ ++++RNI Sbjct: 72 ATMVKAVEKAIMMSDLGLNPQSAGTNIRIPLPALTEERRKSLIKVVRADAEQGRVAIRNI 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD +K K + ED +++IQK+TD+ IK ID+ +K+K++M Sbjct: 132 RRDANGDIKALLKEKEIGEDDDRRAQDEIQKMTDTCIKQIDTILSDKEKDLMEV 185 >gi|295676822|ref|YP_003605346.1| ribosome recycling factor [Burkholderia sp. CCGE1002] gi|295436665|gb|ADG15835.1| ribosome recycling factor [Burkholderia sp. CCGE1002] Length = 186 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 76/172 (44%), Positives = 110/172 (63%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M +I K D+ +RTGR +LD ++ + YGS VP++QVAN+T+++ R + V W+ Sbjct: 13 KMQRSIDAFKNDLSKIRTGRAHTGLLDHIQCDYYGSPVPISQVANLTLIDARTIGVQPWE 72 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K+MV VE+ I ES+LGLNP G V+R+P+P TEERR L KV + AE +K++VRN+ Sbjct: 73 KKMVQVVEKAIRESDLGLNPATHGDVIRVPMPALTEERRRELTKVVRSEAETAKVAVRNL 132 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD + LKK K + SED +D+QK+TD + ID K+ EIM Sbjct: 133 RRDANEQLKKLVKDKEISEDDERRAGDDVQKLTDKFVAEIDKLVTTKEAEIM 184 >gi|15644151|ref|NP_229200.1| ribosome recycling factor [Thermotoga maritima MSB8] gi|170289219|ref|YP_001739457.1| ribosome recycling factor [Thermotoga sp. RQ2] gi|6831653|sp|Q9X1B9|RRF_THEMA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238688857|sp|B1LBS6|RRF_THESQ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|6730315|pdb|1DD5|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome Recycling Factor, Rrf gi|50513689|pdb|1T1M|C Chain C, Binding Position Of Ribosome Recycling Factor (Rrf) On The E. Coli 70s Ribosome gi|4981962|gb|AAD36470.1|AE001792_10 ribosome recycling factor [Thermotoga maritima MSB8] gi|170176722|gb|ACB09774.1| ribosome recycling factor [Thermotoga sp. RQ2] Length = 185 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 74/180 (41%), Positives = 120/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K++M T+ ++ ++ +RTG+ SP++L+ +KV+ YG P+NQ+A +++ E R L Sbjct: 6 IKEAKEKMKRTLEKIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISISEERTL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK +++ +E+ I+ S+LGLNPI +G V+R+ P T E+R VK A E+ K Sbjct: 66 VIKPWDKSVLSLIEKAINASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIVEEGK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIRR+ + +K+ +K G ED LEN+IQK+TD I+ +D FE KK+EIM F Sbjct: 126 IAIRNIRREILKKIKEDQKEGLIPEDDAKRLENEIQKLTDEFIEKLDEVFEIKKEEIMEF 185 >gi|331090948|ref|ZP_08339790.1| ribosome-recycling factor [Lachnospiraceae bacterium 2_1_46FAA] gi|330405170|gb|EGG84706.1| ribosome-recycling factor [Lachnospiraceae bacterium 2_1_46FAA] Length = 183 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 75/173 (43%), Positives = 113/173 (65%), Gaps = 1/173 (0%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 ++M + + L ++ T+R GR +P +LD + V+ YG P+ Q AN++V EPRM+ + W Sbjct: 10 EKMTKSYNSLVGELATIRAGRANPHVLDKLTVDYYGVPTPIQQAANISVPEPRMIQIQPW 69 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 +K MV +E+ I S++G+NP +G V+R+ PE TEERR L K E++K+++RN Sbjct: 70 EKSMVKEIEKAILTSDIGINPTNDGSVIRLVFPELTEERRKELAKDVKKKGEQAKVAIRN 129 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 IRRDG D KK K + SED + LE+++QK+TD IK+ID EEK KE+M Sbjct: 130 IRRDGNDTFKKL-KGTEVSEDEIKDLEDELQKLTDKYIKDIDKAVEEKSKEVM 181 >gi|187924430|ref|YP_001896072.1| ribosome recycling factor [Burkholderia phytofirmans PsJN] gi|238689610|sp|B2T5J1|RRF_BURPP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|187715624|gb|ACD16848.1| ribosome recycling factor [Burkholderia phytofirmans PsJN] Length = 186 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 76/172 (44%), Positives = 111/172 (64%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M +I K D+ +RTGR +LD ++ + YGS VP++QVAN+T+++ R + V W+ Sbjct: 13 KMQRSIDAFKNDLSKIRTGRAHTGLLDHIQCDYYGSPVPISQVANLTLIDARTIGVQPWE 72 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K+MV VE+ I ES+LGLNP +G V+R+P+P TEERR L KV + AE +K++VRN+ Sbjct: 73 KKMVQVVEKAIRESDLGLNPATQGDVIRVPMPALTEERRRELTKVVKSEAETAKVAVRNL 132 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD + LKK K + SED +D+QK+TD + ID K+ EIM Sbjct: 133 RRDANEQLKKLVKDKEISEDDERRAGDDVQKLTDKFVAEIDKLVVTKEAEIM 184 >gi|221133311|ref|ZP_03559616.1| ribosome recycling factor [Glaciecola sp. HTCC2999] Length = 185 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 76/178 (42%), Positives = 109/178 (61%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 + +DRM ++S LK + +RTGR PS+LD + V YG+ PL Q+AN+ + R L + Sbjct: 8 DAQDRMEKSVSALKSQLAKIRTGRAHPSLLDSIVVNYYGADTPLKQLANIIAEDSRTLAL 67 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 SV+DK + +VE+ I S+LGLNP+ G +RIP+P TEERR L+KVA AE +++ Sbjct: 68 SVFDKSAIQAVEKAIMSSDLGLNPMSAGGAIRIPLPPLTEERRKDLIKVARGEAENGRVA 127 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 VRNIRRD +K K SED + E +IQ +T+ IK +D K+KE+M Sbjct: 128 VRNIRRDANSDIKDLLKDKDISEDQARAGEENIQSLTNDFIKQVDELLSVKEKELMEI 185 >gi|170692145|ref|ZP_02883308.1| ribosome recycling factor [Burkholderia graminis C4D1M] gi|170142575|gb|EDT10740.1| ribosome recycling factor [Burkholderia graminis C4D1M] Length = 186 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 76/172 (44%), Positives = 111/172 (64%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M +I K D+ +RTGR +LD ++ + YGS VP++QVAN+T+++ R + V W+ Sbjct: 13 KMQRSIDAFKNDLSKIRTGRAHTGLLDHIQCDYYGSPVPISQVANLTLIDARTIGVQPWE 72 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K+MV VE+ I ES+LGLNP +G V+R+P+P TEERR L KV + AE +K++VRN+ Sbjct: 73 KKMVPVVEKAIRESDLGLNPATQGDVIRVPMPALTEERRRELTKVVKSEAETAKVAVRNL 132 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD + LKK K + SED +D+QK+TD + ID K+ EIM Sbjct: 133 RRDANEQLKKLVKDKEISEDDERRAGDDVQKLTDKFVAEIDKLVVTKEAEIM 184 >gi|260101372|ref|ZP_05751609.1| ribosome recycling factor [Lactobacillus helveticus DSM 20075] gi|260084824|gb|EEW68944.1| ribosome recycling factor [Lactobacillus helveticus DSM 20075] gi|328465732|gb|EGF36936.1| ribosome recycling factor [Lactobacillus helveticus MTCC 5463] Length = 185 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 72/179 (40%), Positives = 118/179 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +D M +I +K + ++R G + ++LD V+VE YG+ PL Q++++T+ EPR+L Sbjct: 6 IKKAQDNMDKSIKVYQKRLASIRAGVANAALLDNVQVEYYGAPTPLTQMSSITIPEPRVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +D+ + +E + SNLGL P +G+V+R+ +P+ T ERR + K YAE +K Sbjct: 66 LITPYDQNSLDDIEHALLASNLGLTPANDGKVIRLVIPQLTGERREEIAKEVGKYAEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 I+VRN+RR+ MD LKK +K G +ED +LE +QKITD + K ID +EK+KEI+ Sbjct: 126 IAVRNVRREAMDALKKEQKDGNITEDEQRNLEKQVQKITDDSTKKIDQLADEKRKEIIQ 184 >gi|229086377|ref|ZP_04218553.1| Ribosome-recycling factor [Bacillus cereus Rock3-44] gi|228696893|gb|EEL49702.1| Ribosome-recycling factor [Bacillus cereus Rock3-44] Length = 185 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 75/179 (41%), Positives = 115/179 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ ++M ++ +++ ++R GR S S LD V+V+ YG+ P+ Q+AN+TV E R+L Sbjct: 6 LKSANEKMEKAVAAYSRELASVRAGRASASALDKVQVDYYGAPTPVVQLANITVPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +DK + +E+ I +++LGLNP +G V+RI P TEERR LVK YAE++K Sbjct: 66 VIQPYDKTSIGDIEKAILKADLGLNPSNDGSVIRIAFPALTEERRKDLVKTVKKYAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRN+RRD D LKK K+ + +ED + DIQK TD I +D + K+KEIM Sbjct: 126 VAVRNVRRDANDDLKKLEKASEITEDDLRGYAEDIQKETDKYIAKVDEIAKNKEKEIME 184 >gi|19745589|ref|NP_606725.1| ribosome recycling factor [Streptococcus pyogenes MGAS8232] gi|24418654|sp|Q8P274|RRF_STRP8 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|19747714|gb|AAL97224.1| putative ribosome recycling factor [Streptococcus pyogenes MGAS8232] Length = 185 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 73/178 (41%), Positives = 115/178 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+R + L ++ ++R GR + S+LD ++V+ YG+ PLNQ+A++TV E R+L Sbjct: 6 IETAKERFAQSHQSLSREYASIRAGRANASLLDRIQVDYYGAPTPLNQLASITVPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +DK + +ER ++ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LISPFDKSSIKDIERALNASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 I++RNIRRD MD KK K+ + +ED + +LE DIQK TD IK ID EK+KE++ Sbjct: 126 IAIRNIRRDAMDDAKKQEKAKEITEDELKTLEKDIQKATDDAIKEIDRMTAEKEKELL 183 >gi|269138096|ref|YP_003294796.1| ribosome recycling factor [Edwardsiella tarda EIB202] gi|267983756|gb|ACY83585.1| ribosome recycling factor [Edwardsiella tarda EIB202] gi|304558140|gb|ADM40804.1| Ribosome recycling factor [Edwardsiella tarda FL6-60] Length = 185 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 74/174 (42%), Positives = 112/174 (64%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM + K ++ +RTGR P++LD ++VE YG+ PL Q+AN+ + R L ++V+D Sbjct: 12 RMDKCVESFKGNISKIRTGRAHPNLLDGIQVEYYGTATPLRQLANIVAEDSRTLALTVFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + M ++E+ I S+LGLNP G V+R+P+P TEERR L+K+ + AE ++SVRN+ Sbjct: 72 RSMSGAIEKAILTSDLGLNPASAGTVIRVPLPPLTEERRKDLIKLVRSEAESGRVSVRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD D +K K + SED +++IQKITD IK ID+ +K+KE+M F Sbjct: 132 RRDANDKVKALLKDKEISEDEDRKSQDEIQKITDLMIKKIDAALADKEKELMDF 185 >gi|322411286|gb|EFY02194.1| ribosome recycling factor [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 185 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 73/178 (41%), Positives = 115/178 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+R + L ++ ++R GR + S+LD ++++ YG+ PLNQ+A++TV E R+L Sbjct: 6 IETAKERFAQSHHSLSREYASIRAGRANASLLDRIQIDYYGAPTPLNQLASITVPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +DK + +ER ++ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LISPFDKSSIKDIERALNASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 IS+RNIRRD MD KK K+ + +ED + +LE DIQK TD IK ID EK+KE++ Sbjct: 126 ISIRNIRRDAMDDAKKQEKAKEITEDELKTLEKDIQKATDDAIKEIDRMTAEKEKELL 183 >gi|222152659|ref|YP_002561834.1| ribosome recycling factor [Streptococcus uberis 0140J] gi|254809534|sp|B9DRF1|RRF_STRU0 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|222113470|emb|CAR41195.1| ribosome recycling factor [Streptococcus uberis 0140J] Length = 185 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 77/183 (42%), Positives = 115/183 (62%), Gaps = 2/183 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 N +I+ N R + L ++ ++R GR + S+LD ++VE YG PLNQ+A++TV Sbjct: 3 NAIIEKAN--QRFEQSFQSLSREYASIRAGRANASLLDRIQVEYYGVPTPLNQLASITVP 60 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 E R+L++S +DK + +ER I+ S+LG+ P +G V+R+ +P TEE R L K Sbjct: 61 EARVLLISPFDKSSIKDIERAINASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKV 120 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 E KI++RNIRRD MD KK K+ + +ED + +LE DIQK TD IK+ID EK+K Sbjct: 121 GENQKIAIRNIRRDAMDEAKKQEKNKEITEDELKALEKDIQKATDQAIKHIDGMTSEKEK 180 Query: 182 EIM 184 E++ Sbjct: 181 ELL 183 >gi|37680738|ref|NP_935347.1| ribosome recycling factor [Vibrio vulnificus YJ016] gi|320155595|ref|YP_004187974.1| ribosome recycling factor [Vibrio vulnificus MO6-24/O] gi|39932018|sp|Q7MIG3|RRF_VIBVY RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|37199487|dbj|BAC95318.1| ribosome recycling factor [Vibrio vulnificus YJ016] gi|319930907|gb|ADV85771.1| ribosome recycling factor [Vibrio vulnificus MO6-24/O] Length = 185 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 76/179 (42%), Positives = 112/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK + +RTGR PS+L + V+ YG+ PL QVANV + R L Sbjct: 7 KDAQERMEKSVEALKNSLSKVRTGRAHPSLLSGISVDYYGAATPLTQVANVIAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DKE+ VE+ I S+LGLNP+ G V+R+P+P TEERR LVK+ AE ++ Sbjct: 67 ITVFDKELTQKVEKAIMMSDLGLNPMSAGTVIRVPLPPLTEERRKDLVKIVRGEAEGGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD LK K + SED +++IQK+TD+ +K ID K+KE+M Sbjct: 127 AVRNIRRDANSDLKALLKEKEISEDEDRKAQDEIQKLTDAAVKKIDDVLAAKEKELMEV 185 >gi|300704228|ref|YP_003745831.1| ribosome recycling factor (ribosome-releasing factor) [Ralstonia solanacearum CFBP2957] gi|299071892|emb|CBJ43221.1| Ribosome recycling factor (Ribosome-releasing factor) [Ralstonia solanacearum CFBP2957] Length = 186 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 75/172 (43%), Positives = 110/172 (63%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M +I K D+ +RTGR +LD V+V+ YGS VP++QVANV + + R + V W+ Sbjct: 13 KMQKSIDAFKADLAKVRTGRAHTGLLDHVQVDYYGSMVPISQVANVGLADARTISVQPWE 72 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K++V++VE+ I E++LGLNP G V+R+P+P TEERR L KV + E +K++VRN+ Sbjct: 73 KKLVSAVEKAIREADLGLNPATMGDVIRVPMPALTEERRKELTKVVKSEGEDAKVAVRNV 132 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD + KK K SED ++D+QK+TD + +D EK KEIM Sbjct: 133 RRDANEQFKKLVKDKAISEDDERRGQDDVQKLTDRFVAEVDKLVAEKDKEIM 184 >gi|221124412|ref|XP_002163993.1| PREDICTED: hypothetical protein [Hydra magnipapillata] gi|260220938|emb|CBA29007.1| Ribosome-recycling factor [Curvibacter putative symbiont of Hydra magnipapillata] Length = 186 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 74/172 (43%), Positives = 112/172 (65%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M +I+ LK ++ +RTGR +P++LD V V+ YGS VPL+QVAN+++++ R + V W+ Sbjct: 13 KMDQSIASLKNNLTKIRTGRANPALLDTVHVDYYGSMVPLSQVANLSLIDARTISVQPWE 72 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K M +E+ I +S+LGLNP G+++R+P+P TEERR L KV E +K++VRN+ Sbjct: 73 KNMAPKIEKAIRDSDLGLNPSSMGELIRVPMPAMTEERRKELTKVVRGEGEGAKVAVRNL 132 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD + +K+ K ASED E D+QK TD I ID K+++IM Sbjct: 133 RRDANEAVKRLVKDKLASEDDQKRCEADVQKTTDKHITEIDRLVASKEQDIM 184 >gi|237729478|ref|ZP_04559959.1| ribosome releasing factor [Citrobacter sp. 30_2] gi|226909207|gb|EEH95125.1| ribosome releasing factor [Citrobacter sp. 30_2] Length = 185 Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 75/174 (43%), Positives = 111/174 (63%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM + K + +RTGR SPS+LD + VE YG+ PL Q+A+VTV + R L ++V+D Sbjct: 12 RMDKCVEAFKNQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + M +VE+ I S+LGLNP G +R+P+P TEERR L K+ AE ++++VRN+ Sbjct: 72 RSMGPAVEKAIMASDLGLNPSSAGSDIRVPLPPLTEERRKDLTKIVRGEAEGARVAVRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD D +K K + SED ++D+QK+TD+ IK +D+ EK+ E+M F Sbjct: 132 RRDANDKVKALLKEKEISEDDDRRSQDDVQKLTDAAIKKVDAALAEKEAELMQF 185 >gi|262166334|ref|ZP_06034071.1| ribosome recycling factor [Vibrio mimicus VM223] gi|262170774|ref|ZP_06038452.1| ribosome recycling factor [Vibrio mimicus MB-451] gi|261891850|gb|EEY37836.1| ribosome recycling factor [Vibrio mimicus MB-451] gi|262026050|gb|EEY44718.1| ribosome recycling factor [Vibrio mimicus VM223] Length = 185 Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 75/179 (41%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK + +RTGR PS+L + V+ YG+ PLNQVANV + R L Sbjct: 7 KDAQERMEKSVEALKNGLSKIRTGRAHPSLLTGISVDYYGAPTPLNQVANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+++ VE+ I S+LGLNP+ G ++R+P+P TEERR LVK+ AE ++ Sbjct: 67 ITVFDRDLTQKVEKAILMSDLGLNPMSAGTIIRVPLPPLTEERRRDLVKIVRGEAEGGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD + LK K + SED + DIQK+TD+ +K ID K+KE+M Sbjct: 127 AVRNIRRDANNDLKGLLKDKEISEDDERRAQEDIQKLTDAAVKKIDDVLAAKEKELMEV 185 >gi|281355491|ref|ZP_06241985.1| ribosome recycling factor [Victivallis vadensis ATCC BAA-548] gi|281318371|gb|EFB02391.1| ribosome recycling factor [Victivallis vadensis ATCC BAA-548] Length = 188 Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 71/178 (39%), Positives = 116/178 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++++ M T LK +RTG+ SP++++ + VE YG+ L +A +T EPR+L Sbjct: 9 LDSLEEHMMKTEDALKNSFAAIRTGKASPALVEGITVEYYGTQTRLRDIAGITAPEPRLL 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WD V+++E+ I SN+G+ P+ +G+ L++P+PE +++RR ALVK A + E +K Sbjct: 69 VIQPWDASAVSAIEKAILASNVGITPMSDGRTLKLPIPELSQDRRAALVKQAKSEVEDAK 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++RNIRR+G D KK++K G +ED + DIQK+TD I +D F K+KE+M Sbjct: 129 VALRNIRREGNDAAKKAQKDGLLTEDEHKKMLEDIQKLTDRYIAGLDKEFSAKEKELM 186 >gi|186476093|ref|YP_001857563.1| ribosome recycling factor [Burkholderia phymatum STM815] gi|238691306|sp|B2JIC3|RRF_BURP8 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|184192552|gb|ACC70517.1| ribosome recycling factor [Burkholderia phymatum STM815] Length = 186 Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 76/172 (44%), Positives = 112/172 (65%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M ++ K D+ +RTGR +LD ++V+ YGS VP++QVAN+T+++ R + V W+ Sbjct: 13 KMQRSLDAFKNDLSKIRTGRAHTGLLDHIQVDYYGSPVPISQVANLTLVDARTIGVQPWE 72 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K+MVA VE+ I ES+LGLNP G V+R+P+P TEERR L KV + E +K++VRN+ Sbjct: 73 KKMVAVVEKAIRESDLGLNPASHGDVIRVPMPPLTEERRKELTKVVKSEGETAKVAVRNL 132 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD + LKK K + SED +D+QK+TD + ID + K+ EIM Sbjct: 133 RRDANEQLKKLVKDKEISEDDERRAGDDVQKLTDKFVAEIDKLVQTKEGEIM 184 >gi|91784116|ref|YP_559322.1| ribosome recycling factor [Burkholderia xenovorans LB400] gi|296158901|ref|ZP_06841729.1| ribosome recycling factor [Burkholderia sp. Ch1-1] gi|122970345|sp|Q13XB9|RRF_BURXL RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|91688070|gb|ABE31270.1| ribosome recycling factor [Burkholderia xenovorans LB400] gi|295890776|gb|EFG70566.1| ribosome recycling factor [Burkholderia sp. Ch1-1] Length = 186 Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 76/172 (44%), Positives = 111/172 (64%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M +I K D+ +RTGR +LD ++ + YGS VP++QVAN+T+++ R + V W+ Sbjct: 13 KMQRSIDAFKNDLSKIRTGRAHTGLLDHIQCDYYGSPVPISQVANLTLIDARTIGVQPWE 72 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K+MV VE+ I ES+LGLNP +G V+R+P+P TEERR L KV + AE +K++VRN+ Sbjct: 73 KKMVPVVEKAIRESDLGLNPATQGDVIRVPMPALTEERRRELTKVVKSEAETAKVAVRNL 132 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD + LKK K + SED +D+QK+TD + ID K+ EIM Sbjct: 133 RRDANEQLKKLVKDKEISEDDERRAGDDVQKLTDRFVAEIDKLVVTKEAEIM 184 >gi|310659006|ref|YP_003936727.1| ribosome recycling factor [Clostridium sticklandii DSM 519] gi|308825784|emb|CBH21822.1| ribosome recycling factor [Clostridium sticklandii] Length = 185 Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 71/178 (39%), Positives = 119/178 (66%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++++M TI+ LK +++T+R GR +P+MLD V V+ YG+ PL Q+A V+ EPR ++ Sbjct: 7 KKLEEKMEKTIAVLKDELLTIRAGRANPNMLDRVMVDYYGTMTPLKQMAGVSSPEPRTIL 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + WDK + S+E+ I S+LG NP +G +RI +P+ TEERR L+K+ E++K+ Sbjct: 67 IQPWDKSAMGSIEKAILSSDLGFNPTNDGNSIRINIPQLTEERRKDLIKLVAKTGEQAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++RN RR+ + +KK K+ + +ED ++++QK+TDS IK ID +K+K+IM Sbjct: 127 AIRNERREANEAIKKMEKTSELTEDDSKKAQDEVQKLTDSHIKMIDDMLAKKEKDIME 184 >gi|210615979|ref|ZP_03290879.1| hypothetical protein CLONEX_03098 [Clostridium nexile DSM 1787] gi|210149984|gb|EEA80993.1| hypothetical protein CLONEX_03098 [Clostridium nexile DSM 1787] Length = 185 Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 78/178 (43%), Positives = 112/178 (62%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 LQ +M T+ L ++ T+R GR +P +LD + V+ YGS P+ QVAN++V E RM+ Sbjct: 7 LQVYDTKMQKTLHSLDAELATIRAGRANPHILDKLTVDYYGSATPIQQVANISVPEARMI 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + W+K MV +E+ I S++G+NP +G V+R+ PE TEERR LVK E +K Sbjct: 67 QIQPWEKSMVKEIEKAILTSDIGINPTNDGTVIRLVFPELTEERRKELVKDVKKKGEAAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++VRNIRRDG D KK + S SED + LE ++QK+TD IK +D E K KE++ Sbjct: 127 VAVRNIRRDGNDAFKKLKGSD-VSEDEIKGLEEELQKLTDKYIKEVDKSVEAKSKEVL 183 >gi|150021158|ref|YP_001306512.1| ribosome recycling factor [Thermosipho melanesiensis BI429] gi|166231524|sp|A6LMH6|RRF_THEM4 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|149793679|gb|ABR31127.1| ribosome recycling factor [Thermosipho melanesiensis BI429] Length = 185 Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 75/180 (41%), Positives = 118/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +++M +++ + +++ LRTGR SP++L+ +KV+ YG P+NQVA V V E R L Sbjct: 6 VKKTEEKMKKSVNSIDEELKKLRTGRPSPALLEEIKVDYYGVPTPINQVATVNVTEERSL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ W+K ++ +VE+ I S+LGLNP+ +G V+R+ P T E+R VK A E K Sbjct: 66 IIKPWEKNLLNAVEKAIQASDLGLNPMNDGNVIRLVFPTPTTEQRQKWVKKAKDIVEHGK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I+VRNIRR+ + LK +K+G+ SED LE +IQ +TD ++ +D FE K+KEIM F Sbjct: 126 IAVRNIRREILKELKDLKKNGEISEDDERRLEKEIQNLTDKYVEELDKLFERKEKEIMEF 185 >gi|121604663|ref|YP_981992.1| ribosome recycling factor [Polaromonas naphthalenivorans CJ2] gi|166230814|sp|A1VN43|RRF_POLNA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|120593632|gb|ABM37071.1| ribosome recycling factor [Polaromonas naphthalenivorans CJ2] Length = 186 Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 75/177 (42%), Positives = 113/177 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q +M ++ + ++ +RTGR +P +LD V V+ YGS VP++QVANV +L+ R + Sbjct: 8 QQATQKMQQSLESFQHNLTKIRTGRANPGLLDTVHVDYYGSMVPISQVANVALLDARTIS 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 VS W+K M A +E+ I +S+LGLNP +G ++R+P+P TEERR L KV A E +K+ Sbjct: 68 VSPWEKGMGAKIEKAIRDSDLGLNPASQGDLIRVPMPAMTEERRKELTKVVRAEGEHAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++RN+RRD D +KK K ASED + +IQK TD I ++D K+++IM Sbjct: 128 AIRNLRRDANDGVKKLVKDKLASEDDERRSQEEIQKFTDRFIADVDKLVTGKEQDIM 184 >gi|262404591|ref|ZP_06081146.1| ribosome recycling factor [Vibrio sp. RC586] gi|262349623|gb|EEY98761.1| ribosome recycling factor [Vibrio sp. RC586] Length = 185 Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 75/179 (41%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK + +RTGR PS+L + V+ YG+ PLNQVANV + R L Sbjct: 7 KDAQERMEKSVEALKNGLSKIRTGRAHPSLLTGISVDYYGAPTPLNQVANVIAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+++ VE+ I S+LGLNP+ G ++R+P+P TEERR LVK+ AE ++ Sbjct: 67 ITVFDRDLTQKVEKAILMSDLGLNPMSAGTIIRVPLPPLTEERRRDLVKIVRGEAEGGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD + LK K + SED + DIQK+TD+ +K ID K+KE+M Sbjct: 127 AVRNIRRDANNDLKGLLKDKEISEDDERRAQEDIQKLTDAAVKKIDDVLAAKEKELMEV 185 >gi|332527873|ref|ZP_08403910.1| ribosome recycling factor [Rubrivivax benzoatilyticus JA2] gi|332112450|gb|EGJ12243.1| ribosome recycling factor [Rubrivivax benzoatilyticus JA2] Length = 186 Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 77/182 (42%), Positives = 114/182 (62%), Gaps = 1/182 (0%) Query: 4 VIDLQNIK-DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLE 62 + D+Q ++M ++ K ++ +RTGR P +LD V VE YGS +P++QVANV++L+ Sbjct: 3 IADIQKTAAEKMAKSVDAFKNELHKIRTGRAHPGILDQVHVEYYGSMLPISQVANVSLLD 62 Query: 63 PRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 R + V W+K M +E+ I ES+LGLNP +G +LR+P+P TEERR L KV Sbjct: 63 ARTISVQPWEKGMGPKIEKAIRESDLGLNPSAQGDLLRVPMPALTEERRKELTKVVRHTG 122 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 E++KI VR +RRD D LKK K SED ++++Q++TD TI ID + K+ E Sbjct: 123 EEAKIHVRAVRRDANDQLKKLVKDKLVSEDDERRGQDEVQRLTDRTIAEIDKLVQAKEAE 182 Query: 183 IM 184 +M Sbjct: 183 VM 184 >gi|319779547|ref|YP_004130460.1| Ribosome recycling factor [Taylorella equigenitalis MCE9] gi|317109571|gb|ADU92317.1| Ribosome recycling factor [Taylorella equigenitalis MCE9] Length = 186 Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 79/172 (45%), Positives = 109/172 (63%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM +I LK ++ +RTGR +LD V V+ YGS VP++QVANV+V++ R L V W+ Sbjct: 13 RMNKSIESLKTNLSKIRTGRAHAGILDHVTVDYYGSLVPVSQVANVSVVDARTLSVQPWE 72 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K M +++ I ES+LGLNPI G+ +R+P+P TEERR L KV A E +K+++RN+ Sbjct: 73 KNMAGPIDKAIRESDLGLNPITLGEAIRVPMPALTEERRRDLTKVVRAEGEDAKVAIRNL 132 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD D LKK K + SED + IQK+TD + ID EK+ EIM Sbjct: 133 RRDSNDTLKKLLKDKEISEDDDRRAQEVIQKMTDKFVGEIDKIVSEKEAEIM 184 >gi|226227179|ref|YP_002761285.1| ribosome recycling factor [Gemmatimonas aurantiaca T-27] gi|226090370|dbj|BAH38815.1| ribosome recycling factor [Gemmatimonas aurantiaca T-27] Length = 184 Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 80/178 (44%), Positives = 113/178 (63%), Gaps = 3/178 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ K M I KK+ ++R+G+ SP+MLD +KVEAYGS VPLNQVA++ EPR+L Sbjct: 8 LKDAKSGMEKAIENSKKEFSSVRSGKASPNMLDTIKVEAYGSFVPLNQVASIAAPEPRIL 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK +E+ I ES LGL+P +G V+R+P+P E+RR LVKV H AE + Sbjct: 68 LVTPFDKGQAKVIEKAIRESELGLDPAHQGGVIRVPLPSMNEQRRKELVKVLHKMAEDGR 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 I+VR+ R DG D LK K SED E D+QK+ D I +D+ + K+ E+M Sbjct: 128 IAVRHARTDGRDKLK---KLDGVSEDDKKHTEKDLQKVHDDFIGKLDALVKAKEAELM 182 >gi|167950442|ref|ZP_02537516.1| ribosome recycling factor [Endoriftia persephone 'Hot96_1+Hot96_2'] gi|110589434|gb|ABG77226.1| ribosome recycling factor [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 173 Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 76/173 (43%), Positives = 110/173 (63%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M ++ L ++ +RTGR PS+LD +KV+ YGS PLNQVAN+ + + R L V+ W+K Sbjct: 1 MDKSVQALHNELAKIRTGRAHPSLLDHIKVDYYGSETPLNQVANINIEDARTLAVTPWEK 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 MV +VE+ I S+LGLNP+ G V+R+P+P TEERR ++++A AE ++++VRNIR Sbjct: 61 TMVQAVEKAIMTSDLGLNPMSAGTVIRVPMPPLTEERRKDMIRIARNEAEGARVAVRNIR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RD LK K SED + IQK+TD +K ID K+K++M F Sbjct: 121 RDANHDLKDLVKEKMISEDDERRGQEIIQKLTDQHVKTIDEVLAVKEKDLMEF 173 >gi|83589883|ref|YP_429892.1| ribosome recycling factor [Moorella thermoacetica ATCC 39073] gi|123524654|sp|Q2RJP0|RRF_MOOTA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|83572797|gb|ABC19349.1| ribosome recycling factor [Moorella thermoacetica ATCC 39073] Length = 185 Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 75/179 (41%), Positives = 116/179 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 LQ +++M + L++++ +LR GR +P++L+ V V YG+ P+NQ+A V+ E R+L Sbjct: 6 LQEAEEKMKKAVEGLRRELASLRAGRANPALLEKVLVSYYGTPTPVNQLATVSSPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WD+ ++ +E+ I +S+LGL P +G V+RI +P+ TEERR LVKVA AE+ + Sbjct: 66 VIQPWDRNILPEIEKAILKSDLGLTPSSDGTVIRITIPQLTEERRSELVKVARKKAEEFR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 + VRN RR+ D LK S K+ +ASED V + +QK TD+ I+ ID K+ EIM Sbjct: 126 VMVRNARREANDKLKASEKNKEASEDEVKRAQEKVQKTTDNYIQIIDKILATKEAEIME 184 >gi|217077680|ref|YP_002335398.1| ribosome recycling factor [Thermosipho africanus TCF52B] gi|226703270|sp|B7IDI0|RRF_THEAB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|217037535|gb|ACJ76057.1| frr ribosome recycling factor [Thermosipho africanus TCF52B] Length = 185 Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 73/174 (41%), Positives = 112/174 (64%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM ++ + +++ LRTGR SP++L+ +K++ YG P+NQVA + V E R L++ W+ Sbjct: 12 RMKKSVEAIDEELKKLRTGRPSPALLEEIKIDYYGVPTPINQVATINVTEERSLIIKPWE 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K +++++E+ I S+LGLNP +G V+R+ P T E+R VK E KI+VRNI Sbjct: 72 KNLLSAIEKAIQASDLGLNPTNDGNVVRLVFPSPTTEQRQKWVKKTKEIVEHGKIAVRNI 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD + LK+ K+G+ SED LE ++Q +TD I+ +D FE K+KEIM F Sbjct: 132 RRDVIKELKEMTKNGEISEDDEKRLEKEVQNLTDKYIEELDKLFERKEKEIMEF 185 >gi|161507690|ref|YP_001577644.1| ribosome recycling factor [Lactobacillus helveticus DPC 4571] gi|172048311|sp|A8YVR6|RRF_LACH4 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|160348679|gb|ABX27353.1| ribosome recycling factor Rrf [Lactobacillus helveticus DPC 4571] gi|323466331|gb|ADX70018.1| Ribosome-recycling factor [Lactobacillus helveticus H10] Length = 185 Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 72/179 (40%), Positives = 117/179 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +D M +I +K + ++R G + ++LD V+VE YG+ PL Q++++T+ EPR+L Sbjct: 6 IKKAQDNMDKSIKVYQKRLASIRAGVANAALLDNVQVEYYGAPTPLTQMSSITIPEPRVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +D+ + +E + SNLGL P +G+V+R+ +P+ T ERR + K YAE +K Sbjct: 66 LITPYDQNSLDDIEHALLASNLGLTPANDGKVIRLVIPQLTGERREEIAKEVGKYAEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 I+VRN+RR+ MD LKK +K G +ED +LE +QKITD + K ID +EK+KEI Sbjct: 126 IAVRNVRREAMDALKKEQKDGNITEDEQRNLEKQVQKITDDSTKKIDQLADEKRKEITQ 184 >gi|251781912|ref|YP_002996214.1| ribosome recycling factor [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390541|dbj|BAH81000.1| ribosome releasing factor [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323126728|gb|ADX24025.1| ribosome recycling factor [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 185 Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 73/178 (41%), Positives = 115/178 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+R + L ++ ++R GR + S+LD ++V+ YG+ PLNQ+A++TV E R+L Sbjct: 6 IETAKERFAQSHHSLSREYASIRAGRANASLLDRIQVDYYGAPTPLNQLASITVPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +DK + +ER ++ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LISPFDKSSIKDIERALNASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 I++RNIRRD MD KK K+ + +ED + +LE DIQK TD IK ID EK+KE++ Sbjct: 126 IAIRNIRRDAMDDAKKQEKAKEITEDELKTLEKDIQKATDDAIKEIDRMTAEKEKELL 183 >gi|213964585|ref|ZP_03392785.1| ribosome recycling factor [Corynebacterium amycolatum SK46] gi|213952778|gb|EEB64160.1| ribosome recycling factor [Corynebacterium amycolatum SK46] Length = 185 Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 68/179 (37%), Positives = 119/179 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++ G ++ ++++ +RTGR +P+M + V E YG P+ Q+A ++V EPRML Sbjct: 6 LLDCEEKYGSSVEHCREELTHIRTGRANPAMFNGVIAEYYGVPTPITQMATISVPEPRML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ ++ ++ +E I S+LG+NP +GQVLR+ +P+ TEERR +VKV+ + E +K Sbjct: 66 LIKPYELSVMGDIENAIRNSDLGVNPTNDGQVLRVTIPQLTEERRREMVKVSRSKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 I++RN+RR GM+ LKK +K G A ED V + E ++ ++T + ++ +DS E K+ E+M Sbjct: 126 IAIRNVRRKGMETLKKIQKDGDAGEDEVQAGEKELDQVTKNYVEQVDSLVERKEAELME 184 >gi|313673948|ref|YP_004052059.1| ribosome recycling factor [Calditerrivibrio nitroreducens DSM 19672] gi|312940704|gb|ADR19896.1| ribosome recycling factor [Calditerrivibrio nitroreducens DSM 19672] Length = 184 Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 80/184 (43%), Positives = 118/184 (64%), Gaps = 2/184 (1%) Query: 4 VIDLQN-IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLE 62 V DL N K++M T+ K ++ ++RTGR S S+ D +KV+ YG+ PL+QVA + E Sbjct: 2 VSDLFNKTKEKMEKTLEHYKTELKSVRTGRASVSLFDNIKVDYYGTPTPLSQVAALNA-E 60 Query: 63 PRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 PRM+++ W+ M+ +E+ I SNLGL P +G+V+R+P+P TEERR +VK+ + Sbjct: 61 PRMIIIQPWEPSMIKPIEKAILTSNLGLTPSNDGRVIRVPIPPLTEERRKEIVKLVKKMS 120 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 E++KI++RN RRD ++ LKK K + SED IQK+TD IK ID E+K+KE Sbjct: 121 EEAKIAIRNERRDAIEKLKKMEKDKEISEDDNKKGAEQIQKLTDEYIKKIDEVTEKKEKE 180 Query: 183 IMHF 186 IM Sbjct: 181 IMEI 184 >gi|152968766|ref|YP_001333875.1| ribosome releasing factor [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150953615|gb|ABR75645.1| ribosome releasing factor [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 173 Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 74/173 (42%), Positives = 112/173 (64%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M + K + +RTGR SPS+LD + VE YG+ PL Q+A+VTV + R L ++V+D+ Sbjct: 1 MEKCVEAFKNQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDR 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 M A+VE+ I S+LGLNP G +R+P+P TEERR L K+ AE+++++VRN+R Sbjct: 61 SMSAAVEKAIMASDLGLNPSSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RD D +K K + SED ++D+QK+TD+ IK +D+ +K+ E+M F Sbjct: 121 RDANDKVKALLKEKEISEDDDRRSQDDVQKMTDAAIKKVDAALADKEAELMQF 173 >gi|168335176|ref|ZP_02693282.1| ribosome recycling factor [Epulopiscium sp. 'N.t. morphotype B'] Length = 180 Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 69/178 (38%), Positives = 115/178 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +D+M +I LK+D T+R GR +P++LD + V+ YG+ P+ QV N+ V E R+L Sbjct: 1 MKKFEDKMEKSILSLKEDFNTIRAGRANPNVLDKIVVDYYGTLTPIKQVGNIVVPEARIL 60 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WD ++ +E+ I+ES++G+NP +G+V+R+ PE T+ERR L K E +K Sbjct: 61 QIQPWDSSLLKGIEKAINESDIGINPSNDGKVIRLVFPELTQERRKELTKEIKKKGENAK 120 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++RNIRR+ MD KK +K+ + +ED + EN +QK+TD + ID E+K E++ Sbjct: 121 VAIRNIRREAMDSFKKQQKANEITEDEQTTNENSVQKLTDKFVAEIDKLIEQKSSEVL 178 >gi|15642255|ref|NP_231888.1| ribosome recycling factor [Vibrio cholerae O1 biovar El Tor str. N16961] gi|147673161|ref|YP_001217772.1| ribosome recycling factor [Vibrio cholerae O395] gi|153803002|ref|ZP_01957588.1| ribosome recycling factor [Vibrio cholerae MZO-3] gi|153827697|ref|ZP_01980364.1| ribosome recycling factor [Vibrio cholerae MZO-2] gi|227082381|ref|YP_002810932.1| ribosome recycling factor [Vibrio cholerae M66-2] gi|229507669|ref|ZP_04397174.1| ribosome recycling factor [Vibrio cholerae BX 330286] gi|229512136|ref|ZP_04401615.1| ribosome recycling factor [Vibrio cholerae B33] gi|229519271|ref|ZP_04408714.1| ribosome recycling factor [Vibrio cholerae RC9] gi|229522203|ref|ZP_04411620.1| ribosome recycling factor [Vibrio cholerae TM 11079-80] gi|229524260|ref|ZP_04413665.1| ribosome recycling factor [Vibrio cholerae bv. albensis VL426] gi|229528740|ref|ZP_04418130.1| ribosome recycling factor [Vibrio cholerae 12129(1)] gi|229607173|ref|YP_002877821.1| ribosome recycling factor [Vibrio cholerae MJ-1236] gi|254286071|ref|ZP_04961032.1| ribosome recycling factor [Vibrio cholerae AM-19226] gi|254849387|ref|ZP_05238737.1| ribosome recycling factor [Vibrio cholerae MO10] gi|255747047|ref|ZP_05420992.1| ribosome recycling factor [Vibrio cholera CIRS 101] gi|262161409|ref|ZP_06030519.1| ribosome recycling factor [Vibrio cholerae INDRE 91/1] gi|297580900|ref|ZP_06942825.1| ribosome recycling factor [Vibrio cholerae RC385] gi|298500368|ref|ZP_07010173.1| ribosome recycling factor [Vibrio cholerae MAK 757] gi|22001952|sp|Q9KPV5|RRF_VIBCH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|172047609|sp|A5F618|RRF_VIBC3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|254809542|sp|C3LQ29|RRF_VIBCM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|9656818|gb|AAF95401.1| ribosome recycling factor [Vibrio cholerae O1 biovar El Tor str. N16961] gi|124121445|gb|EAY40188.1| ribosome recycling factor [Vibrio cholerae MZO-3] gi|146315044|gb|ABQ19583.1| ribosome recycling factor [Vibrio cholerae O395] gi|149737829|gb|EDM52734.1| ribosome recycling factor [Vibrio cholerae MZO-2] gi|150423981|gb|EDN15921.1| ribosome recycling factor [Vibrio cholerae AM-19226] gi|227010269|gb|ACP06481.1| ribosome recycling factor [Vibrio cholerae M66-2] gi|227014153|gb|ACP10363.1| ribosome recycling factor [Vibrio cholerae O395] gi|229332514|gb|EEN98000.1| ribosome recycling factor [Vibrio cholerae 12129(1)] gi|229337841|gb|EEO02858.1| ribosome recycling factor [Vibrio cholerae bv. albensis VL426] gi|229341128|gb|EEO06133.1| ribosome recycling factor [Vibrio cholerae TM 11079-80] gi|229343960|gb|EEO08935.1| ribosome recycling factor [Vibrio cholerae RC9] gi|229352101|gb|EEO17042.1| ribosome recycling factor [Vibrio cholerae B33] gi|229355174|gb|EEO20095.1| ribosome recycling factor [Vibrio cholerae BX 330286] gi|229369828|gb|ACQ60251.1| ribosome recycling factor [Vibrio cholerae MJ-1236] gi|254845092|gb|EET23506.1| ribosome recycling factor [Vibrio cholerae MO10] gi|255735449|gb|EET90849.1| ribosome recycling factor [Vibrio cholera CIRS 101] gi|262028720|gb|EEY47374.1| ribosome recycling factor [Vibrio cholerae INDRE 91/1] gi|297534726|gb|EFH73562.1| ribosome recycling factor [Vibrio cholerae RC385] gi|297541061|gb|EFH77115.1| ribosome recycling factor [Vibrio cholerae MAK 757] gi|327484773|gb|AEA79180.1| Ribosome recycling factor [Vibrio cholerae LMA3894-4] Length = 185 Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 75/179 (41%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK + +RTGR PS+L + V+ YG+ PLNQVANV + R L Sbjct: 7 KDAQERMEKSVEALKNGLSKIRTGRAHPSLLTGISVDYYGAPTPLNQVANVIAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+E+ VE+ I S+LGLNP+ G ++R+P+P TEERR LVK+ AE ++ Sbjct: 67 ITVFDRELTQKVEKAILMSDLGLNPMSAGTIIRVPLPPLTEERRRDLVKIVRGEAEGGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD + LK K + SED + +IQK+TD+ +K ID K+KE+M Sbjct: 127 AVRNIRRDANNDLKALLKDKEISEDDERRAQEEIQKLTDAAVKKIDDVLAAKEKELMEV 185 >gi|91761973|ref|ZP_01263938.1| Ribosome recycling factor [Candidatus Pelagibacter ubique HTCC1002] gi|91717775|gb|EAS84425.1| Ribosome recycling factor [Candidatus Pelagibacter ubique HTCC1002] Length = 183 Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 80/172 (46%), Positives = 110/172 (63%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M TI +K++ +LRTGR + SMLDLVKV+ YG +PLNQV+++T + R + + VWD Sbjct: 10 KMDKTIEVFQKELTSLRTGRANASMLDLVKVDVYGQAMPLNQVSSITTPDARTINIQVWD 69 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 V V+ I +S LGLNP ++GQ++R+PVP+ EERR + K+ + EK KIS+RNI Sbjct: 70 LNNVPLVDTAIKKSELGLNPQIDGQLIRLPVPDLNEERRTEIKKLIKSMGEKCKISIRNI 129 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RR+ D LK K SED E +Q TD IK ID+ E K+KEIM Sbjct: 130 RREANDDLKNLVKEKIISEDEEKINEKLVQSFTDEHIKIIDTKVEAKEKEIM 181 >gi|319939517|ref|ZP_08013877.1| ribosome-recycling factor [Streptococcus anginosus 1_2_62CV] gi|319811503|gb|EFW07798.1| ribosome-recycling factor [Streptococcus anginosus 1_2_62CV] Length = 185 Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 72/179 (40%), Positives = 115/179 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+RM + L ++ ++R GR + S+LD + VE YG PLNQ+A++T+ E R+L Sbjct: 6 VEKAKERMTQSHQSLAREFGSIRAGRANASLLDRISVEYYGVETPLNQIASITIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + +ER ++ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LVTPFDKSSIKDIERALNASDLGITPASDGTVIRLVIPALTEETRRDLAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 I++RNIRRD MD KK K+ + +ED + +LE DIQK+TD +K+ID K+KE++ Sbjct: 126 IAIRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDEAVKHIDDMTASKEKELIE 184 >gi|196234716|ref|ZP_03133527.1| ribosome recycling factor [Chthoniobacter flavus Ellin428] gi|196221224|gb|EDY15783.1| ribosome recycling factor [Chthoniobacter flavus Ellin428] Length = 186 Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 70/171 (40%), Positives = 113/171 (66%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M +++ + +RTG+ SP++++ + VEAYGS + L Q+A +T EPR+LV+ +D Sbjct: 14 MEKGFEYMQHEFAAVRTGKASPALVENIDVEAYGSQMKLKQLALITTPEPRLLVIQPFDG 73 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 +ER I ES +G+NP V+G+++R+P+P +EERR LVK AE++++ +R+ R Sbjct: 74 STTKDIERAIKESKIGINPAVDGKIIRLPIPALSEERRKDLVKGIKQMAEEARVRIRSAR 133 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RDG+D LKK++K GK +ED + S E +IQK+TD K ID K+ +I+ Sbjct: 134 RDGIDGLKKAQKDGKITEDDLESYEKEIQKLTDGFTKKIDDAVNAKEADIL 184 >gi|116872745|ref|YP_849526.1| ribosome recycling factor [Listeria welshimeri serovar 6b str. SLCC5334] gi|123458442|sp|A0AIB5|RRF_LISW6 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|116741623|emb|CAK20747.1| ribosome recycling factor [Listeria welshimeri serovar 6b str. SLCC5334] Length = 185 Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 75/180 (41%), Positives = 121/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K++M L + + T+R GR + S+LD + V+ YG+ P+NQ+A+++V E RML Sbjct: 6 LTKSKEKMDKAEQALTRQLGTIRAGRANASLLDRLSVDYYGAPTPVNQMASISVPEARML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK ++ +E+ I +S+LGL P +G VLR+ +P+ TEERR LVK AE++K Sbjct: 66 LITPYDKTVLGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRR+ + LKK K+G +ED + S D+QK+TD +IKNID+ ++K+ EI+ Sbjct: 126 VAVRNIRREANEELKKLEKNGDITEDDLRSYGEDVQKLTDESIKNIDNITKDKEAEILEV 185 >gi|258423900|ref|ZP_05686785.1| ribosome recycling factor [Staphylococcus aureus A9635] gi|257845929|gb|EEV69958.1| ribosome recycling factor [Staphylococcus aureus A9635] Length = 184 Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 77/176 (43%), Positives = 114/176 (64%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K RM +I L +++ + GR + ++L+ V V+ YG+ P+ Q+A++ V E R+LV+S Sbjct: 9 KSRMQKSIESLSRELANISAGRANSNLLNGVTVDYYGAPTPVQQLASINVPEARLLVISP 68 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +DK VA +E+ I +NLG+NP +G+V+RI VP TEERR VK E++K+SVR Sbjct: 69 YDKSSVADIEKAIIAANLGVNPTSDGEVIRIAVPALTEERRKERVKDVKKIGEEAKVSVR 128 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 NIRRD D LKK K+G +ED + S D+QK TD++IK ID +K+K+IM Sbjct: 129 NIRRDMNDQLKKDEKNGDITEDELRSGTEDVQKATDNSIKEIDQMIADKEKDIMSV 184 >gi|258620999|ref|ZP_05716033.1| Ribosome-recycling factor [Vibrio mimicus VM573] gi|258586387|gb|EEW11102.1| Ribosome-recycling factor [Vibrio mimicus VM573] Length = 185 Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 75/179 (41%), Positives = 112/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK + +RTGR PS+L + V+ YG+ PLNQVANV + R L Sbjct: 7 KDAQERMEKSVEALKNGLSKIRTGRAHPSLLTGISVDYYGAPTPLNQVANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+++ VE+ I S+LGLNP+ G ++R+P+P TEERR LVK+ AE ++ Sbjct: 67 ITVFDRDLTQKVEKAILMSDLGLNPMSAGTIIRVPLPPLTEERRRDLVKIVRGEAEGGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD + LK K SED + DIQK+TD+ +K ID K+KE+M Sbjct: 127 AVRNIRRDANNDLKGLLKDKDISEDDERRAQEDIQKLTDAAVKKIDDVLAAKEKELMEV 185 >gi|160944136|ref|ZP_02091366.1| hypothetical protein FAEPRAM212_01638 [Faecalibacterium prausnitzii M21/2] gi|158444812|gb|EDP21816.1| hypothetical protein FAEPRAM212_01638 [Faecalibacterium prausnitzii M21/2] gi|295105052|emb|CBL02596.1| ribosome recycling factor [Faecalibacterium prausnitzii SL3/3] Length = 184 Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 70/174 (40%), Positives = 112/174 (64%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 +D+M ++ L +++ +R GR +P++LD V V+ YG+ P+ Q+A V V E R L ++ Sbjct: 9 EDKMKSSVEHLSRELAAVRAGRANPAVLDKVVVDYYGAPTPIQQLAAVAVSEARTLTITP 68 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 WD+ ++ + + I S++G+ PI +G +R+ P EERR L K E +K++VR Sbjct: 69 WDRTLLRPISKAIMASDVGITPIDDGVTIRLNFPAPNEERRKQLAKEVSKLGEDAKVAVR 128 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 N+RRD MD K +K+G+ +ED ++E D+QK+TD IKNID+ EEK+KEIM Sbjct: 129 NVRRDAMDKAKAMKKAGELTEDTQKTMEEDVQKLTDKYIKNIDAAVEEKQKEIM 182 >gi|121998245|ref|YP_001003032.1| ribosome recycling factor [Halorhodospira halophila SL1] gi|166230792|sp|A1WX18|RRF_HALHL RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|121589650|gb|ABM62230.1| ribosome recycling factor [Halorhodospira halophila SL1] Length = 185 Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 76/182 (41%), Positives = 113/182 (62%), Gaps = 1/182 (0%) Query: 6 DLQNIKDR-MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D+Q DR M + LK D+ LRTGR S+LD V VE YG VP+ Q ANV+V + R Sbjct: 4 DIQEDADRRMAKAVESLKHDLARLRTGRAHTSLLDQVNVEYYGMEVPIKQAANVSVEDSR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 L V+ ++K MV ++E+ I SNLGL+P+ GQV+R+P+P TE+RR +V++ AE+ Sbjct: 64 TLAVTPFEKHMVPAIEKAIMASNLGLSPVSAGQVIRVPLPSLTEDRRKEMVRLVKNEAEQ 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++++RN+RRD LK K +ED + IQK+TD + +D EEK++E+M Sbjct: 124 ARVAIRNVRRDANSDLKDLAKGKDITEDEERRAQEAIQKLTDRYVAQVDDLLEEKERELM 183 Query: 185 HF 186 Sbjct: 184 EV 185 >gi|169830793|ref|YP_001716775.1| ribosome recycling factor [Candidatus Desulforudis audaxviator MP104C] gi|169637637|gb|ACA59143.1| ribosome recycling factor [Candidatus Desulforudis audaxviator MP104C] Length = 174 Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 74/174 (42%), Positives = 113/174 (64%), Gaps = 1/174 (0%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M TI L ++ +LR GR +P++LD + V+ YGS +P+NQ+A V+V E R+LV+ WDK Sbjct: 1 MMKTIEVLDREFASLRAGRATPALLDRITVDYYGSTIPINQLATVSVPEARLLVIQPWDK 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 + +ER I +S+LG+ P +G ++R+ VP+ TEERR LVK E++K++VRNIR Sbjct: 61 SAIGEIERAILKSDLGITPSSDGNIIRLAVPQLTEERRRDLVKFLKKRGEEAKVAVRNIR 120 Query: 134 RDGMDHLKKSRKSGKA-SEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RD ++ LK +K G SED + +++ QK+TD +K ID K+KE+M Sbjct: 121 RDVIERLKALQKEGGGFSEDDLRREQDEAQKLTDRYVKEIDRIVAAKEKEVMEI 174 >gi|323339424|ref|ZP_08079706.1| ribosome recycling factor [Lactobacillus ruminis ATCC 25644] gi|323093135|gb|EFZ35725.1| ribosome recycling factor [Lactobacillus ruminis ATCC 25644] Length = 240 Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 77/179 (43%), Positives = 121/179 (67%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 +L +++M + L+ ++ +R G + S+L+ V VE YG+ PLNQ+A ++V E R+ Sbjct: 60 ELVKYQEKMQKAEAALQHELGGIRAGVANASLLNRVMVEYYGAPTPLNQMAQISVPEARV 119 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 L+V+ +DK + VE + S+LGL P+ +G +R+ +P+ TEERR L K A AEK Sbjct: 120 LLVTPYDKSSLKDVEHALLASDLGLTPMNDGSAIRLVIPQLTEERRKELAKQVRAAAEKG 179 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 K++VRN+RR+ MD LKK++K+G SED++ LE++ QKITD++IKNID K+KEI+ Sbjct: 180 KVAVRNVRREMMDSLKKAQKNGDMSEDVLHDLEDEAQKITDASIKNIDGITAAKEKEIL 238 >gi|299823044|ref|ZP_07054930.1| ribosome recycling factor [Listeria grayi DSM 20601] gi|299816573|gb|EFI83811.1| ribosome recycling factor [Listeria grayi DSM 20601] Length = 185 Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 77/175 (44%), Positives = 116/175 (66%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K RM L K + T+R GR + S+LD + V+ YG+ P+NQ+A++++ E R+LV++ Sbjct: 10 KARMEKAEHSLSKQLGTIRAGRANASLLDRITVDYYGAPTPINQIASISIPEARLLVITP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +DK + VE+ I +S+LGL+P +G VLR+ +P+ TEERR LVK AE++K+++R Sbjct: 70 FDKNSLEDVEKAILKSDLGLSPNNDGTVLRLSIPQPTEERRRELVKEVKKEAEEAKVAIR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 NIRRD + LKK KSG+ +ED + S D+Q ITD +IK ID + K+ EIM Sbjct: 130 NIRRDANEELKKLEKSGEITEDDLRSYGEDVQAITDESIKRIDEIAKNKEAEIME 184 >gi|261211375|ref|ZP_05925663.1| ribosome recycling factor [Vibrio sp. RC341] gi|260839330|gb|EEX65956.1| ribosome recycling factor [Vibrio sp. RC341] Length = 185 Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 74/179 (41%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK + +RTGR PS+L + V+ YG+ PLNQ+ANV + R L Sbjct: 7 KDAQERMEKSVEALKNGLSKIRTGRAHPSLLTGISVDYYGAPTPLNQIANVIAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+++ VE+ I S+LGLNP+ G ++R+P+P TEERR LVK+ AE ++ Sbjct: 67 ITVFDRDLTQKVEKAILMSDLGLNPMSAGTIIRVPLPPLTEERRRDLVKIVRGEAEGGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD + LK K + SED + DIQK+TD+ +K ID K+KE+M Sbjct: 127 AVRNIRRDANNDLKGLLKDKEISEDDERRAQEDIQKLTDAAVKKIDDVLAAKEKELMEV 185 >gi|293394705|ref|ZP_06638997.1| ribosome recycling factor [Serratia odorifera DSM 4582] gi|291422831|gb|EFE96068.1| ribosome recycling factor [Serratia odorifera DSM 4582] Length = 173 Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 74/173 (42%), Positives = 113/173 (65%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M ++ K + +RTGR SPS+LD + VE YG+ PL Q+A++TV + R L ++V+D+ Sbjct: 1 MEKSVEAFKNQISKIRTGRASPSILDGIMVEYYGAATPLRQLASITVEDSRTLKINVFDR 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 + +VE+ I S+LGLNP G +R+P+P TEERR L+KV AE+ ++SVRN+R Sbjct: 61 SLSPAVEKAIMSSDLGLNPSSAGSDIRVPLPALTEERRKDLIKVVRGEAEQGRVSVRNVR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RD D +K K + SED ++D+QK+TD+ IK +D+ +K+KE+M F Sbjct: 121 RDANDKIKALLKDKEISEDEERRAQDDVQKMTDAYIKLVDAALADKEKELMEF 173 >gi|239908426|ref|YP_002955168.1| ribosome recycling factor [Desulfovibrio magneticus RS-1] gi|259494539|sp|C4XMX9|RRF_DESMR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|239798293|dbj|BAH77282.1| ribosome recycling factor [Desulfovibrio magneticus RS-1] Length = 184 Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 73/180 (40%), Positives = 117/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ +DRM ++ L K+ LRTGR + S+LD V+V+ YG+ L+Q+A+V + R + Sbjct: 5 LKDAEDRMKKALAALDKEFSRLRTGRATTSLLDGVRVDYYGTATQLDQLASVATPDSRTI 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WD++ A +E+ I +S LGL P+ +G+++RI +P TE+RR LVKVA Y E++K Sbjct: 65 TIQPWDRKAFADIEKAILKSGLGLTPVNDGKIIRISIPPLTEDRRKDLVKVAKKYVEEAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RN+RRD + LKK + SED ++D+QK+TD+ I D F +K+KEIM Sbjct: 125 VAMRNVRRDANELLKKKKNDKAISEDDQRKGQDDVQKLTDNYIVKTDEAFSKKEKEIMEI 184 >gi|171463274|ref|YP_001797387.1| ribosome recycling factor [Polynucleobacter necessarius subsp. necessarius STIR1] gi|238689053|sp|B1XTU6|RRF_POLNS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|171192812|gb|ACB43773.1| ribosome recycling factor [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 186 Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 74/176 (42%), Positives = 118/176 (67%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 N +M ++ LK +++ +R+GR +P +L+ + V+ YG+ PL+QVA++ + + R + V Sbjct: 9 NANQKMEKSLEALKTNLVKVRSGRANPGILEHIHVDYYGNPTPLSQVASLGLADARTINV 68 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 ++K MVA++E+ I +S+LGLNP+ +G V+R+P+P TEERR L KV + E +KI+ Sbjct: 69 QPFEKTMVAAIEKAIRDSDLGLNPVSQGTVIRVPMPALTEERRRELTKVVKSEGEDAKIA 128 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 VRN+RRD +HLK+ K + SED +DIQK+TD + +ID EK+KEIM Sbjct: 129 VRNLRRDANEHLKRLTKDKEISEDDERRATDDIQKMTDKAVIDIDKIIAEKEKEIM 184 >gi|320540035|ref|ZP_08039691.1| ribosome recycling factor [Serratia symbiotica str. Tucson] gi|320029884|gb|EFW11907.1| ribosome recycling factor [Serratia symbiotica str. Tucson] Length = 199 Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 75/174 (43%), Positives = 116/174 (66%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM ++ K + +RTGR SPS+LD + VE YG+ PL Q+A VTV + R L ++++D Sbjct: 26 RMEKSVEAFKNQISKVRTGRASPSILDGIMVEYYGAATPLRQLAIVTVEDSRTLAINLFD 85 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + + ++VE+ I S+LGLNP G V+R+P+P TEERR L+KV A AE+ +++VRN+ Sbjct: 86 RSLGSAVEKAIMSSDLGLNPNSAGSVIRVPLPPLTEERRRDLIKVVRAEAEQGRVAVRNV 145 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD D +K K + SED +++IQK+TD+ IK +D+ +K+KE++ F Sbjct: 146 RRDANDKVKALLKDKEISEDADRRSQDEIQKMTDAYIKLLDAALADKEKELLDF 199 >gi|300311496|ref|YP_003775588.1| ribosome recycling factor [Herbaspirillum seropedicae SmR1] gi|300074281|gb|ADJ63680.1| ribosome recycling factor (ribosome releasing factor) protein [Herbaspirillum seropedicae SmR1] Length = 186 Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 78/177 (44%), Positives = 118/177 (66%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N + +M +I LK ++ +RTGR +LD V V+ YGS L+QVAN+T+++ R + Sbjct: 8 KNSEQKMAKSIETLKANLAKVRTGRAHTGLLDQVMVDYYGSPTGLSQVANLTLIDARTIG 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V ++K+MVA VE+ I E++LGLNP G+++R+P+P TEERR +VK+ AE +KI Sbjct: 68 VQPYEKKMVAVVEKAIREADLGLNPATHGELIRVPMPPLTEERRKEMVKLVKGEAEDAKI 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +VRNIRR+G + LKK K ASED +++IQK+TD + ID +K+KE+M Sbjct: 128 AVRNIRREGNESLKKLVKDKVASEDDERRGQDEIQKLTDKFVAEIDKLVSDKEKEVM 184 >gi|282878181|ref|ZP_06286977.1| ribosome recycling factor [Prevotella buccalis ATCC 35310] gi|281299599|gb|EFA91972.1| ribosome recycling factor [Prevotella buccalis ATCC 35310] Length = 186 Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 78/178 (43%), Positives = 117/178 (65%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 LQ ++RM +FL++ + +R GR + ++LD V V +YGS VPLNQVANV+V + R + Sbjct: 8 LQGAEERMQMATTFLEEQLNRIRAGRANVAILDGVMVSSYGSMVPLNQVANVSVPDARTI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WD++ + +E+ I +S++G+ P G+++R+ +P+ TEERR LVK + EKSK Sbjct: 68 AIKPWDRKAIRDIEKAIMDSDVGITPENNGEIIRLGIPQPTEERRRDLVKQCNKIGEKSK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 I VRN+R + D LKK+ K G SED EN++QKI D IK +D+ E+K KEIM Sbjct: 128 IEVRNVRSEIKDKLKKAIKDG-LSEDAGKDAENELQKIHDKFIKQVDNLLEDKTKEIM 184 >gi|238918776|ref|YP_002932290.1| ribosome recycling factor, [Edwardsiella ictaluri 93-146] gi|259494541|sp|C5BHB9|RRF_EDWI9 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238868344|gb|ACR68055.1| ribosome recycling factor, putative [Edwardsiella ictaluri 93-146] Length = 185 Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 74/174 (42%), Positives = 111/174 (63%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM + K ++ +RTGR P++LD ++VE YG+ PL Q+AN+ + R L ++V+D Sbjct: 12 RMDKCVESFKGNISKIRTGRAHPNLLDGIQVEYYGTATPLRQLANIVAEDSRTLALTVFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + M ++E+ I S+LGLNP G V+R+P+P TEERR L+K+ + AE ++SVRN+ Sbjct: 72 RSMSGAIEKAILTSDLGLNPASAGTVIRVPLPPLTEERRKDLIKLVRSEAESGRVSVRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD D +K K + SED + +IQKITD IK ID+ +K+KE+M F Sbjct: 132 RRDANDKVKALLKDKEISEDEDRKSQEEIQKITDLMIKKIDAALADKEKELMDF 185 >gi|269468297|gb|EEZ79979.1| ribosome recycling factor [uncultured SUP05 cluster bacterium] Length = 185 Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 76/179 (42%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ +RM TI L+ +R GR PS+L+ + V+ YGS VP++QVAN++ + R L Sbjct: 7 QDAGERMNKTIDSLENAFSKIRAGRAHPSLLEQIHVDYYGSMVPISQVANISAEDSRTLK 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+ W+K+MVA +E+ I S+LGLNP GQV+RIP+P TEERR LV+V AE++K+ Sbjct: 67 VTPWEKDMVAVIEKAIMTSDLGLNPQTMGQVMRIPLPPLTEERRRELVRVVKDEAEQAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD K+ K + SED E++IQKITD +K+++ K+ ++ Sbjct: 127 AIRNIRRDANSDFKELLKEKEVSEDEARKAEDNIQKITDDHVKSVEDKLTHKEDSLLEI 185 >gi|227878826|ref|ZP_03996733.1| ribosome recycling factor [Lactobacillus crispatus JV-V01] gi|256843348|ref|ZP_05548836.1| ribosome recycling factor [Lactobacillus crispatus 125-2-CHN] gi|256849833|ref|ZP_05555264.1| ribosome-recycling factor [Lactobacillus crispatus MV-1A-US] gi|262046921|ref|ZP_06019881.1| ribosome recycling factor [Lactobacillus crispatus MV-3A-US] gi|293381207|ref|ZP_06627215.1| ribosome recycling factor [Lactobacillus crispatus 214-1] gi|295693144|ref|YP_003601754.1| ribosome-recycling factor [Lactobacillus crispatus ST1] gi|227861574|gb|EEJ69186.1| ribosome recycling factor [Lactobacillus crispatus JV-V01] gi|256614768|gb|EEU19969.1| ribosome recycling factor [Lactobacillus crispatus 125-2-CHN] gi|256713322|gb|EEU28312.1| ribosome-recycling factor [Lactobacillus crispatus MV-1A-US] gi|260572903|gb|EEX29463.1| ribosome recycling factor [Lactobacillus crispatus MV-3A-US] gi|290922247|gb|EFD99241.1| ribosome recycling factor [Lactobacillus crispatus 214-1] gi|295031250|emb|CBL50729.1| Ribosome-recycling factor [Lactobacillus crispatus ST1] Length = 185 Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 71/179 (39%), Positives = 118/179 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K +M D+I +K + ++R G + ++LD V+VE YG+ PL Q++++T+ EPR+L Sbjct: 6 IEKAKTKMTDSIKVYQKRLASIRAGVANAALLDNVQVEYYGAPTPLTQMSSITIPEPRVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +D+ + +E + SNLGL P +G+V+R+ +P+ T ERR + K +AE++K Sbjct: 66 LITPYDQNSLDDIEHALLASNLGLTPANDGKVIRLVIPQLTGERREEIAKEVGKFAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 I+VRN+RRD M+ LKK K+G +ED +LE +QK+TD K ID +EK+KEI Sbjct: 126 IAVRNVRRDAMNTLKKDEKNGDITEDEQRNLEKQVQKVTDDAAKQIDQLADEKRKEITQ 184 >gi|304439992|ref|ZP_07399885.1| ribosome recycling factor [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371484|gb|EFM25097.1| ribosome recycling factor [Peptoniphilus duerdenii ATCC BAA-1640] Length = 184 Score = 151 bits (381), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 72/175 (41%), Positives = 115/175 (65%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 D+M +I LK D++++R GR +P++LD + VE YG PLNQVA ++ E R+LVV W Sbjct: 10 DKMKKSIEVLKDDLLSIRAGRANPALLDKITVEYYGQVTPLNQVAGISAPEARLLVVQPW 69 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 D+ +++ +E+ I +S+LGLNP +G+V+R+ +P+ TEERR L K+ E +K+++RN Sbjct: 70 DQSLISVIEKEILKSDLGLNPSNDGKVVRLIIPQLTEERRRDLTKIVKKNGEDTKVAIRN 129 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 IRR +D +KK K + SED E+ +Q++TD IK +D + K+ E+M Sbjct: 130 IRRVAIDEVKKLEKDKEISEDERKVAEDKVQELTDKYIKEVDVVTKAKEDELMEI 184 >gi|15924249|ref|NP_371783.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus Mu50] gi|15926842|ref|NP_374375.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus N315] gi|21282871|ref|NP_645959.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus MW2] gi|49483422|ref|YP_040646.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus MRSA252] gi|49486098|ref|YP_043319.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus MSSA476] gi|57651829|ref|YP_186135.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus COL] gi|82750860|ref|YP_416601.1| ribosome recycling factor [Staphylococcus aureus RF122] gi|87160153|ref|YP_493849.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194969|ref|YP_499769.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267749|ref|YP_001246692.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus JH9] gi|150393808|ref|YP_001316483.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus JH1] gi|151221381|ref|YP_001332203.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus str. Newman] gi|156979580|ref|YP_001441839.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus Mu3] gi|221142493|ref|ZP_03566986.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253315615|ref|ZP_04838828.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253731878|ref|ZP_04866043.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733503|ref|ZP_04867668.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus TCH130] gi|255006046|ref|ZP_05144647.2| ribosome recycling factor [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257425313|ref|ZP_05601738.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus 55/2053] gi|257427974|ref|ZP_05604372.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus 65-1322] gi|257430607|ref|ZP_05606989.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus 68-397] gi|257433367|ref|ZP_05609725.1| ribosome-recycling factor [Staphylococcus aureus subsp. aureus E1410] gi|257436209|ref|ZP_05612256.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus M876] gi|257795685|ref|ZP_05644664.1| ribosome recycling factor [Staphylococcus aureus A9781] gi|258416088|ref|ZP_05682356.1| ribosome recycling factor [Staphylococcus aureus A9763] gi|258421671|ref|ZP_05684595.1| ribosome recycling factor [Staphylococcus aureus A9719] gi|258434827|ref|ZP_05688901.1| ribosome recycling factor [Staphylococcus aureus A9299] gi|258444597|ref|ZP_05692926.1| ribosome-recycling factor [Staphylococcus aureus A8115] gi|258447570|ref|ZP_05695714.1| ribosome recycling factor [Staphylococcus aureus A6300] gi|258449412|ref|ZP_05697515.1| ribosome-recycling factor [Staphylococcus aureus A6224] gi|258452558|ref|ZP_05700564.1| ribosome recycling factor [Staphylococcus aureus A5948] gi|258454791|ref|ZP_05702755.1| ribosome recycling factor [Staphylococcus aureus A5937] gi|262051321|ref|ZP_06023544.1| ribosome recycling factor [Staphylococcus aureus 930918-3] gi|269202876|ref|YP_003282145.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus ED98] gi|282892747|ref|ZP_06300982.1| ribosome recycling factor [Staphylococcus aureus A8117] gi|282903814|ref|ZP_06311702.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus C160] gi|282905577|ref|ZP_06313432.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus Btn1260] gi|282908552|ref|ZP_06316382.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910831|ref|ZP_06318634.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus WBG10049] gi|282914036|ref|ZP_06321823.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus M899] gi|282916519|ref|ZP_06324277.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus D139] gi|282918958|ref|ZP_06326693.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus C427] gi|282920503|ref|ZP_06328224.1| ribosome recycling factor [Staphylococcus aureus A9765] gi|282924081|ref|ZP_06331757.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus C101] gi|282927601|ref|ZP_06335217.1| ribosome recycling factor [Staphylococcus aureus A10102] gi|283770323|ref|ZP_06343215.1| ribosome-recycling factor [Staphylococcus aureus subsp. aureus H19] gi|283958002|ref|ZP_06375453.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus A017934/97] gi|284024252|ref|ZP_06378650.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus 132] gi|293501068|ref|ZP_06666919.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus 58-424] gi|293510030|ref|ZP_06668738.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus M809] gi|293526616|ref|ZP_06671301.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus M1015] gi|294848255|ref|ZP_06789002.1| ribosome recycling factor [Staphylococcus aureus A9754] gi|295406196|ref|ZP_06816003.1| ribosome recycling factor [Staphylococcus aureus A8819] gi|295427746|ref|ZP_06820378.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus EMRSA16] gi|296274817|ref|ZP_06857324.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus MR1] gi|297208095|ref|ZP_06924526.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297244424|ref|ZP_06928307.1| ribosome recycling factor [Staphylococcus aureus A8796] gi|297591296|ref|ZP_06949934.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus MN8] gi|300912176|ref|ZP_07129619.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus TCH70] gi|304381177|ref|ZP_07363830.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|56749387|sp|Q6G9V4|RRF_STAAS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|56749416|sp|Q6GHH6|RRF_STAAR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|56753990|sp|P68785|RRF_STAAM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|56753991|sp|P68786|RRF_STAAU RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|56753994|sp|P68787|RRF_STAAW RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|56753995|sp|P99130|RRF_STAAN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|62900781|sp|Q5HGH2|RRF_STAAC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|122539692|sp|Q2FZ21|RRF_STAA8 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|123486185|sp|Q2FHH9|RRF_STAA3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|123549062|sp|Q2YXK9|RRF_STAAB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166231513|sp|A7X1N7|RRF_STAA1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|172049020|sp|A6QGF9|RRF_STAAE RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|189044079|sp|A6U178|RRF_STAA2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|189044080|sp|A5ISE3|RRF_STAA9 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|2645713|gb|AAB87473.1| ribosome recycling factor [Staphylococcus aureus] gi|13701059|dbj|BAB42354.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus N315] gi|14247029|dbj|BAB57421.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus Mu50] gi|21204310|dbj|BAB95007.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus MW2] gi|49241551|emb|CAG40237.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus MRSA252] gi|49244541|emb|CAG42970.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus MSSA476] gi|57286015|gb|AAW38109.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus COL] gi|82656391|emb|CAI80810.1| ribosome recycling factor [Staphylococcus aureus RF122] gi|87126127|gb|ABD20641.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202527|gb|ABD30337.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740818|gb|ABQ49116.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus JH9] gi|149946260|gb|ABR52196.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus JH1] gi|150374181|dbj|BAF67441.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus str. Newman] gi|156721715|dbj|BAF78132.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus Mu3] gi|253724288|gb|EES93017.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728557|gb|EES97286.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus TCH130] gi|257271770|gb|EEV03908.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus 55/2053] gi|257274815|gb|EEV06302.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus 65-1322] gi|257278735|gb|EEV09354.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus 68-397] gi|257281460|gb|EEV11597.1| ribosome-recycling factor [Staphylococcus aureus subsp. aureus E1410] gi|257284491|gb|EEV14611.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus M876] gi|257789657|gb|EEV27997.1| ribosome recycling factor [Staphylococcus aureus A9781] gi|257839236|gb|EEV63712.1| ribosome recycling factor [Staphylococcus aureus A9763] gi|257842357|gb|EEV66782.1| ribosome recycling factor [Staphylococcus aureus A9719] gi|257849188|gb|EEV73170.1| ribosome recycling factor [Staphylococcus aureus A9299] gi|257850090|gb|EEV74043.1| ribosome-recycling factor [Staphylococcus aureus A8115] gi|257853761|gb|EEV76720.1| ribosome recycling factor [Staphylococcus aureus A6300] gi|257857400|gb|EEV80298.1| ribosome-recycling factor [Staphylococcus aureus A6224] gi|257859776|gb|EEV82618.1| ribosome recycling factor [Staphylococcus aureus A5948] gi|257863174|gb|EEV85938.1| ribosome recycling factor [Staphylococcus aureus A5937] gi|259160696|gb|EEW45717.1| ribosome recycling factor [Staphylococcus aureus 930918-3] gi|262075166|gb|ACY11139.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus ED98] gi|269940750|emb|CBI49132.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus TW20] gi|282314053|gb|EFB44445.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus C101] gi|282316768|gb|EFB47142.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus C427] gi|282319006|gb|EFB49358.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus D139] gi|282322104|gb|EFB52428.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus M899] gi|282325436|gb|EFB55745.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus WBG10049] gi|282327614|gb|EFB57897.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330869|gb|EFB60383.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus Btn1260] gi|282590604|gb|EFB95681.1| ribosome recycling factor [Staphylococcus aureus A10102] gi|282594165|gb|EFB99152.1| ribosome recycling factor [Staphylococcus aureus A9765] gi|282595432|gb|EFC00396.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus C160] gi|282764744|gb|EFC04869.1| ribosome recycling factor [Staphylococcus aureus A8117] gi|283460470|gb|EFC07560.1| ribosome-recycling factor [Staphylococcus aureus subsp. aureus H19] gi|283470474|emb|CAQ49685.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus ST398] gi|283790151|gb|EFC28968.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus A017934/97] gi|285816941|gb|ADC37428.1| Ribosome recycling factor [Staphylococcus aureus 04-02981] gi|290920688|gb|EFD97751.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus M1015] gi|291096073|gb|EFE26334.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus 58-424] gi|291466974|gb|EFF09492.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus M809] gi|294825055|gb|EFG41477.1| ribosome recycling factor [Staphylococcus aureus A9754] gi|294968784|gb|EFG44806.1| ribosome recycling factor [Staphylococcus aureus A8819] gi|295128104|gb|EFG57738.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus EMRSA16] gi|296887338|gb|EFH26240.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297178454|gb|EFH37700.1| ribosome recycling factor [Staphylococcus aureus A8796] gi|297576182|gb|EFH94898.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus MN8] gi|298694551|gb|ADI97773.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus ED133] gi|300886422|gb|EFK81624.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus TCH70] gi|302332865|gb|ADL23058.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus JKD6159] gi|302751082|gb|ADL65259.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340160|gb|EFM06101.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312438362|gb|ADQ77433.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus TCH60] gi|315131053|gb|EFT87037.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus CGS03] gi|315194147|gb|EFU24540.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus CGS00] gi|315198501|gb|EFU28830.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus CGS01] gi|320140924|gb|EFW32771.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus MRSA131] gi|320144360|gb|EFW36126.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus MRSA177] gi|323441038|gb|EGA98745.1| ribosome recycling factor [Staphylococcus aureus O11] gi|323443907|gb|EGB01518.1| ribosome recycling factor [Staphylococcus aureus O46] gi|329313929|gb|AEB88342.1| Ribosome-recycling factor [Staphylococcus aureus subsp. aureus T0131] gi|329727824|gb|EGG64275.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus 21189] gi|329733642|gb|EGG69970.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus 21193] Length = 184 Score = 151 bits (381), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 77/176 (43%), Positives = 114/176 (64%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K RM +I L +++ + GR + ++L+ V V+ YG+ P+ Q+A++ V E R+LV+S Sbjct: 9 KSRMQKSIESLSRELANISAGRANSNLLNGVTVDYYGAPTPVQQLASINVPEARLLVISP 68 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +DK VA +E+ I +NLG+NP +G+V+RI VP TEERR VK E++K+SVR Sbjct: 69 YDKTSVADIEKAIIAANLGVNPTSDGEVIRIAVPALTEERRKERVKDVKKIGEEAKVSVR 128 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 NIRRD D LKK K+G +ED + S D+QK TD++IK ID +K+K+IM Sbjct: 129 NIRRDMNDQLKKDEKNGDITEDELRSGTEDVQKATDNSIKEIDQMIADKEKDIMSV 184 >gi|302342180|ref|YP_003806709.1| ribosome recycling factor [Desulfarculus baarsii DSM 2075] gi|301638793|gb|ADK84115.1| ribosome recycling factor [Desulfarculus baarsii DSM 2075] Length = 185 Score = 151 bits (381), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 76/176 (43%), Positives = 111/176 (63%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K+RM I LK+D +RTGR +P++LD V+ + YG PLNQ+A ++V E R++V+ Sbjct: 10 KERMHKAIEALKRDFSRVRTGRATPTILDGVRADYYGQPTPLNQMAGISVPEARLIVIQP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 WD + +E+ I S+LGL P +G+V+RI P T+ERR L K+ AE++K++VR Sbjct: 70 WDPKSCELIEKAILASDLGLTPQSDGKVVRINFPPLTQERRKDLAKLVRKMAEEAKVAVR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD + LK+ +K G+ SED + +IQK TD IK +D EK+KEIM F Sbjct: 130 AARRDANEMLKEFKKEGEISEDDAFRGQEEIQKTTDDFIKKVDETLAEKEKEIMEF 185 >gi|262283030|ref|ZP_06060797.1| ribosome-recycling factor [Streptococcus sp. 2_1_36FAA] gi|262261282|gb|EEY79981.1| ribosome-recycling factor [Streptococcus sp. 2_1_36FAA] Length = 185 Score = 151 bits (381), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 73/178 (41%), Positives = 114/178 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+RM + L ++ +R GR + S+LD + VE YG PLNQ+A++T+ E R+L Sbjct: 6 VEKAKERMSHSHQSLAREFGAVRAGRANASLLDRISVEYYGVETPLNQIASITIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + +ER I+ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LVTPFDKSSLKDIERAINASDLGITPASDGSVIRLVIPALTEETRRDLAKEVKKIGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 I++RNIRRD MD KK K+ + +ED + +LE DIQK+TD +K+ID K+KE++ Sbjct: 126 IAIRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDEMTAHKEKELL 183 >gi|146308071|ref|YP_001188536.1| ribosome recycling factor [Pseudomonas mendocina ymp] gi|166231209|sp|A4XWT8|RRF_PSEMY RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|145576272|gb|ABP85804.1| ribosome recycling factor [Pseudomonas mendocina ymp] Length = 185 Score = 151 bits (381), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 75/177 (42%), Positives = 115/177 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RMG ++ L +++ ++RTGR PS+LD VKV A+GS +PLNQVA +TV + R L Sbjct: 7 KDAQERMGKSLEALDRNLASIRTGRAHPSILDSVKVPAWGSDMPLNQVAAITVEDARTLK 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + DK + A++E+ I S+LGLNP G +R+P+P TEE R K A AE +K+ Sbjct: 67 IVAHDKNLSAAIEKAIMTSDLGLNPSSAGTTIRVPMPALTEETRKGYTKQARGVAEDAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +VRN+RRD + LKK K+ + SED +++QKITD I ++D E K+ ++M Sbjct: 127 AVRNVRRDALAELKKLAKAKEISEDEERRAADELQKITDKFIADVDKALEVKEADLM 183 >gi|283783956|ref|YP_003363821.1| ribosome recycling factor [Citrobacter rodentium ICC168] gi|282947410|emb|CBG86955.1| ribosome recycling factor [Citrobacter rodentium ICC168] Length = 185 Score = 151 bits (381), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 74/174 (42%), Positives = 113/174 (64%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM + K + +RTGR SPS+LD + VE YG+ PL Q+A+VTV + R L ++V+D Sbjct: 12 RMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLPQLASVTVEDSRTLKINVFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + + A+VE+ I S+LGLNP G +R+P+P TEERR L K+ AE+++++VRN+ Sbjct: 72 RSLSAAVEKAIMASDLGLNPSSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD D +K K + SED ++DIQK+TD+ IK +++ +K+ E+M F Sbjct: 132 RRDANDKVKALLKEKEISEDDDRRSQDDIQKLTDAAIKKVEAALADKEAELMQF 185 >gi|94263226|ref|ZP_01287043.1| Ribosome recycling factor [delta proteobacterium MLMS-1] gi|93456444|gb|EAT06564.1| Ribosome recycling factor [delta proteobacterium MLMS-1] Length = 184 Score = 151 bits (381), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 73/185 (39%), Positives = 123/185 (66%), Gaps = 2/185 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M++VI + ++M ++ ++++ +RTGR S ++LD +KVEAYGS +PLNQVA +T+ Sbjct: 1 MDEVI--LEMSEKMEQSLEAYRRELSRIRTGRASLNILDGIKVEAYGSQLPLNQVATLTI 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E RM+V+ WD + ++E+ I S++GL P +G+V+R+ +P+ TEERR LVK Sbjct: 59 PESRMIVIQPWDAQQGKAIEKAIQASDIGLTPSSDGKVIRLTIPQLTEERRKDLVKQLKK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 +E+ +++VRN+RR+ +D LKK + + ED L+++ QK TD+ I ID+ +K+ Sbjct: 119 LSEEYRVAVRNVRREAIDRLKKLKNDKQLPEDDFFRLQDEAQKETDAAIAKIDTIMADKE 178 Query: 181 KEIMH 185 KE+M Sbjct: 179 KELME 183 >gi|238924132|ref|YP_002937648.1| ribosome recycling factor [Eubacterium rectale ATCC 33656] gi|259494542|sp|C4ZA73|RRF_EUBR3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238875807|gb|ACR75514.1| ribosome recycling factor [Eubacterium rectale ATCC 33656] gi|291524866|emb|CBK90453.1| ribosome recycling factor [Eubacterium rectale DSM 17629] gi|291529007|emb|CBK94593.1| ribosome recycling factor [Eubacterium rectale M104/1] Length = 184 Score = 151 bits (381), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 72/178 (40%), Positives = 117/178 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +D+M T++ L+++ +R GR +P +LD ++V+ YG+ P+ VANV+V EPRM+ Sbjct: 5 LNPFQDKMEKTLNNLEEEYAGIRAGRANPHILDKLRVDYYGTPSPIQSVANVSVPEPRMI 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + W+ MV +E+ I+ S++G+NP +G+++R+ PE TEERR L K E++K Sbjct: 65 QIQPWEASMVKEIEKAINCSDIGINPTNDGKLIRLVFPELTEERRKDLAKDIKKKGEEAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++VRNIRRD +D +KK+ K SED + LE+D QK+TD + +D+ + K KEI+ Sbjct: 125 VAVRNIRRDAIDSIKKTGKEEGISEDEIKGLEDDAQKLTDKFVAKVDAAVDAKCKEIL 182 >gi|148826547|ref|YP_001291300.1| ribosome recycling factor [Haemophilus influenzae PittEE] gi|148716707|gb|ABQ98917.1| ribosome recycling factor [Haemophilus influenzae PittEE] Length = 173 Score = 151 bits (381), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 73/173 (42%), Positives = 110/173 (63%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M ++ LK + +RTGR PS+LD ++VE YG+ PL Q+ANV + R L V+V+D+ Sbjct: 1 MEKSLEALKGHISKIRTGRAQPSLLDAIQVEYYGAATPLRQLANVVAEDARTLAVTVFDR 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 ++++VE+ I S+LGLNP G +R+P+P TEERR L+K+ E+ K+++RN+R Sbjct: 61 SLISAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRNLIKIVKGEGEQGKVAIRNVR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RD D +K K + SE+ E +IQKITD IK +D +K+KE+M F Sbjct: 121 RDANDKIKALLKDKEISENEQHKAEEEIQKITDIYIKKVDEVLADKEKELMDF 173 >gi|156935313|ref|YP_001439229.1| hypothetical protein ESA_03170 [Cronobacter sakazakii ATCC BAA-894] gi|156533567|gb|ABU78393.1| hypothetical protein ESA_03170 [Cronobacter sakazakii ATCC BAA-894] Length = 173 Score = 151 bits (381), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 73/173 (42%), Positives = 111/173 (64%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M + K + +RTGR SPS+LD + VE YG+ PL Q+ANVTV + R L ++V+D+ Sbjct: 1 MDKCVEAFKTQISKVRTGRASPSLLDGIVVEYYGTPTPLRQLANVTVEDSRTLKINVFDR 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 M +VE+ I S+LGLNP G +R+P+P TEERR L+KV AE++++++RN+R Sbjct: 61 SMGPAVEKAIMASDLGLNPSSAGSDIRVPLPPLTEERRKDLIKVVRGEAEQARVAIRNVR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RD D +K K + ED ++D+QK+TD+ IK +D+ +K+ E+M F Sbjct: 121 RDANDKVKALLKDKEIGEDEDRRSQDDVQKLTDAAIKKVDAALADKEAELMQF 173 >gi|291286434|ref|YP_003503250.1| ribosome recycling factor [Denitrovibrio acetiphilus DSM 12809] gi|290883594|gb|ADD67294.1| ribosome recycling factor [Denitrovibrio acetiphilus DSM 12809] Length = 185 Score = 151 bits (381), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 71/170 (41%), Positives = 109/170 (64%) Query: 17 TISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMV 76 TIS K ++ T+RTGR S +M D V V+ YG+ PL+ VA++ EPR++ + WD ++ Sbjct: 16 TISHFKDELKTIRTGRASVAMFDGVTVDYYGTPTPLSGVASLNAPEPRLITIQPWDMSII 75 Query: 77 ASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDG 136 ++E+ I SN+G NP +G+++RIPVP+ TEERR +VK+ AE +K+++RN+RR+G Sbjct: 76 GAIEKAIQNSNMGFNPSNDGKIIRIPVPQLTEERRKEIVKLVKKMAEDNKVAIRNLRREG 135 Query: 137 MDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 D +KK K + SED DIQ +T+ IK +D K+KE+M Sbjct: 136 NDKIKKLEKDKEISEDDSKKFVADIQDVTNDFIKKVDEVTAAKEKEVMEI 185 >gi|288905833|ref|YP_003431055.1| ribosome recycling factor [Streptococcus gallolyticus UCN34] gi|306831922|ref|ZP_07465077.1| ribosome recycling factor [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|306834034|ref|ZP_07467155.1| ribosome recycling factor [Streptococcus bovis ATCC 700338] gi|325978868|ref|YP_004288584.1| ribosome-recycling factor [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288732559|emb|CBI14131.1| ribosome recycling factor [Streptococcus gallolyticus UCN34] gi|304423822|gb|EFM26967.1| ribosome recycling factor [Streptococcus bovis ATCC 700338] gi|304425848|gb|EFM28965.1| ribosome recycling factor [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178796|emb|CBZ48840.1| Ribosome-recycling factor [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 185 Score = 151 bits (381), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 73/179 (40%), Positives = 115/179 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+R + S L ++ +R GR + S+LD ++VE YG+ PLNQ+A++TV E R+L Sbjct: 6 IEKAKERFEQSHSSLAREFAAIRAGRANASLLDRIQVEYYGAMTPLNQLASITVPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +DK + +E I+ S+LG+NP +G V+R+ +P TEE R L K E +K Sbjct: 66 LISPFDKSSLKDIEHAINASDLGINPANDGSVIRLVIPALTEETRKELAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +++RNIRRD MD KK K+ + +ED + LE DIQK TD +K+ID+ K+KE++ Sbjct: 126 VAIRNIRRDAMDEAKKQEKAKEITEDELKVLEKDIQKATDEAVKHIDAMTANKEKELLE 184 >gi|116492646|ref|YP_804381.1| ribosome recycling factor [Pediococcus pentosaceus ATCC 25745] gi|122265890|sp|Q03FT3|RRF_PEDPA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|116102796|gb|ABJ67939.1| ribosome recycling factor [Pediococcus pentosaceus ATCC 25745] Length = 186 Score = 151 bits (381), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 74/179 (41%), Positives = 117/179 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q +++M + L++D+ ++R GR + S+LD V V+ YG+ PLNQ+A++T+ EPR+L Sbjct: 7 IQKAEEKMQKAQNVLERDLGSIRAGRANASLLDKVSVDYYGAPTPLNQMASITIPEPRVL 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK ++ +E+ I S+LG+NP +G +R+ VP+ TEE R L K A EK+K Sbjct: 67 LVTPYDKSVLNDIEQAILMSDLGINPANDGSAIRLVVPQLTEETRKDLAKNVKAEGEKAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRNIRRD MD LKK+ K+G ++D LE Q TD IK +D K+KE++ Sbjct: 127 VAVRNIRRDAMDTLKKANKNGDYNDDEFHDLEKQTQDSTDKAIKVVDEIVANKEKEVLE 185 >gi|254785177|ref|YP_003072605.1| ribosome recycling factor [Teredinibacter turnerae T7901] gi|259494556|sp|C5BQF9|RRF_TERTT RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|237684972|gb|ACR12236.1| ribosome recycling factor [Teredinibacter turnerae T7901] Length = 185 Score = 151 bits (381), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 74/174 (42%), Positives = 113/174 (64%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM T+ L + +RTGR PS+LD V V YGS PL+QVAN++VL+ R L +S W+ Sbjct: 12 RMKKTVEALGINFNKIRTGRAHPSILDGVSVSYYGSDTPLSQVANISVLDARTLSLSPWE 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K MV +E+ I +S+LGLNP+ G+++R+P+P TEE R +K A AE++++S+RN+ Sbjct: 72 KSMVPEIEKAIMKSDLGLNPVTTGELIRVPMPALTEESRKGYIKQAKTEAEQARVSIRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD + +K+ K + SED ++DIQKITD + +D+ K+K++M Sbjct: 132 RRDVLADVKELLKEKEISEDDDRRAQDDIQKITDKYVAEVDAALAVKEKDLMEI 185 >gi|94967292|ref|YP_589340.1| ribosome recycling factor [Candidatus Koribacter versatilis Ellin345] gi|94549342|gb|ABF39266.1| ribosome recycling factor [Candidatus Koribacter versatilis Ellin345] Length = 195 Score = 151 bits (381), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 73/176 (41%), Positives = 114/176 (64%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 +K RM + +K++ RTGR S MLD V+ E YGS +PLNQVA +TV EP++++V Sbjct: 18 QLKTRMEKAVDDFRKELSATRTGRASVHMLDTVQAEYYGSMMPLNQVATITVPEPQLILV 77 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 + +D + ++E+ I +LG+NP+ +G+++RIPVP TE+RR +VK H E+ + + Sbjct: 78 TPFDPSALGAIEKAIRSGDLGMNPMNDGKIIRIPVPPLTEDRRKEMVKHLHKALEEHRTA 137 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +RNIRRDG D +KK+ K K +ED +QK+TD IK ++ + K+KE+M Sbjct: 138 IRNIRRDGNDFIKKTLKDKKITEDEERGTMEHLQKLTDDEIKKMEEMCKTKEKEVM 193 >gi|46579283|ref|YP_010091.1| ribosome recycling factor [Desulfovibrio vulgaris str. Hildenborough] gi|60390259|sp|Q72DQ9|RRF_DESVH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|46448697|gb|AAS95350.1| ribosome recycling factor [Desulfovibrio vulgaris str. Hildenborough] gi|311233111|gb|ADP85965.1| ribosome recycling factor [Desulfovibrio vulgaris RCH1] Length = 186 Score = 151 bits (381), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 74/180 (41%), Positives = 119/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + ++RM I+ L+++ LRTGR S S++D +KV+ YG+ P++QVA+V V + R + Sbjct: 7 LLDAEERMEKAIAALEREFSRLRTGRASASLVDGIKVDYYGTPTPISQVASVAVPDSRCI 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WD+ + +E+ I +S+LGLNP+ +G+++RI +P TEERR L K+A YAE++K Sbjct: 67 TIQPWDRNAFSLIEKAILKSDLGLNPVNDGKIIRINIPPLTEERRKDLGKMARKYAEEAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RRD + LKK K+ + SED + + D+QK+TD + D K+KEIM Sbjct: 127 VAVRNVRRDANEQLKKLEKNKELSEDDLRKAQEDVQKLTDRFVAKTDEKAGAKEKEIMDI 186 >gi|157150295|ref|YP_001450730.1| ribosome recycling factor [Streptococcus gordonii str. Challis substr. CH1] gi|189044081|sp|A8AY70|RRF_STRGC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|157075089|gb|ABV09772.1| ribosome recycling factor [Streptococcus gordonii str. Challis substr. CH1] Length = 185 Score = 151 bits (381), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 73/178 (41%), Positives = 114/178 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+RM + L ++ +R GR + S+LD + VE YG PLNQ+A++T+ E R+L Sbjct: 6 VEKAKERMSHSHQNLAREFGAVRAGRANASLLDRISVEYYGVETPLNQIASITIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + +ER I+ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LVTPFDKSSLKDIERAINASDLGITPASDGSVIRLVIPALTEETRRDLAKEVKKIGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 I++RNIRRD MD KK K+ + +ED + +LE DIQK+TD +K+ID K+KE++ Sbjct: 126 IAIRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDEMTAHKEKELL 183 >gi|120603155|ref|YP_967555.1| ribosome recycling factor [Desulfovibrio vulgaris DP4] gi|166230784|sp|A1VFB2|RRF_DESVV RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|120563384|gb|ABM29128.1| ribosome recycling factor [Desulfovibrio vulgaris DP4] Length = 186 Score = 151 bits (381), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 74/180 (41%), Positives = 119/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + ++RM I+ L+++ LRTGR S S++D +KV+ YG+ P++QVA+V V + R + Sbjct: 7 LLDAEERMEKAIAALEREFSRLRTGRASASLVDGIKVDYYGTPTPISQVASVAVPDSRCI 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WD+ + +E+ I +S+LGLNP+ +G+++RI +P TEERR L K+A YAE++K Sbjct: 67 TIQPWDRNAFSLIEKAILKSDLGLNPVNDGKIIRINIPPLTEERRKDLGKMARKYAEEAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RRD + LKK K+ + SED + + D+QK+TD + D K+KEIM Sbjct: 127 VAVRNVRRDANEQLKKLEKNKELSEDDLRKAQEDVQKLTDRFVAKTDEKAGAKEKEIMDI 186 >gi|329727208|gb|EGG63664.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus 21172] Length = 184 Score = 151 bits (381), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 77/176 (43%), Positives = 114/176 (64%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K RM +I L +++ + GR + ++L+ V V+ YG+ P+ Q+A++ V E R+LV+S Sbjct: 9 KSRMQKSIESLSRELANVSAGRANSNLLNGVTVDYYGAPTPVQQLASINVPEARLLVISP 68 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +DK VA +E+ I +NLG+NP +G+V+RI VP TEERR VK E++K+SVR Sbjct: 69 YDKTSVADIEKAIIAANLGVNPTSDGEVIRIAVPALTEERRKERVKDVKKIGEEAKVSVR 128 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 NIRRD D LKK K+G +ED + S D+QK TD++IK ID +K+K+IM Sbjct: 129 NIRRDMNDQLKKDEKNGDITEDELRSGTEDVQKATDNSIKEIDQMIADKEKDIMSV 184 >gi|332653365|ref|ZP_08419110.1| ribosome recycling factor [Ruminococcaceae bacterium D16] gi|332518511|gb|EGJ48114.1| ribosome recycling factor [Ruminococcaceae bacterium D16] Length = 184 Score = 151 bits (381), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 69/172 (40%), Positives = 112/172 (65%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M TI +K + ++R GR + +LD + VE YG+ PLNQVA ++ +PR L V WD Sbjct: 11 KMIKTIEVVKANFASVRAGRANAGVLDRIMVEYYGTPTPLNQVAAISSPDPRTLTVQPWD 70 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 ++ ++E+ I S+LG+NP +G+++R+ P+ TEERR L K Y+E+ K+++RNI Sbjct: 71 ASLLKAIEKAIQTSDLGINPQNDGRLIRLAFPQLTEERRKELTKQVRKYSEEGKVALRNI 130 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD MD KK +K+ + +ED + LE ++Q +TD K+ID +K++E+M Sbjct: 131 RRDAMDEFKKKKKASEITEDDLKELEKELQDLTDKRCKDIDELTVKKEQELM 182 >gi|319892274|ref|YP_004149149.1| Ribosome recycling factor [Staphylococcus pseudintermedius HKU10-03] gi|317161970|gb|ADV05513.1| Ribosome recycling factor [Staphylococcus pseudintermedius HKU10-03] gi|323464629|gb|ADX76782.1| ribosome recycling factor [Staphylococcus pseudintermedius ED99] Length = 184 Score = 151 bits (381), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 76/180 (42%), Positives = 116/180 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q+ K RM + L +++ + GR + ++L V+V+ YG+ P+ Q+A++ V E R+L Sbjct: 5 IQDAKTRMKKSTENLSRELAQINAGRANSNLLAGVQVDYYGAPTPVQQLASINVPEARLL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VVS +DK +A +E+ I +NLG+NP +G V+RI VP TEERR +VK E +K Sbjct: 65 VVSPYDKTSLADIEKAIIAANLGVNPTSDGDVIRIMVPALTEERRKEIVKEVKKTGENAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+RNIRRD D LK+ K G SED + + +++QKITDS+IK ID +K+K+IM Sbjct: 125 VSIRNIRRDANDTLKRQEKDGDISEDELRNGSDEVQKITDSSIKEIDQLVADKEKDIMSV 184 >gi|300691601|ref|YP_003752596.1| ribosome recycling factor (ribosome-releasing factor) [Ralstonia solanacearum PSI07] gi|299078661|emb|CBJ51319.1| Ribosome recycling factor (Ribosome-releasing factor) [Ralstonia solanacearum PSI07] Length = 186 Score = 151 bits (381), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 74/172 (43%), Positives = 111/172 (64%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M +I K D+ +RTGR +LD V+V+ YGS VP++QVAN+ + + R + V W+ Sbjct: 13 KMQKSIDAFKADLAKVRTGRAHTGLLDHVQVDYYGSMVPISQVANLGLADARTISVQPWE 72 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K+MV++VE+ I E++LGLNP G+V+R+P+P TEERR L KV + E +K++VRN+ Sbjct: 73 KKMVSAVEKAIREADLGLNPATMGEVIRVPMPPLTEERRKELTKVVKSEGEDAKVAVRNV 132 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD + KK K SED ++++QK+TD + +D EK KEIM Sbjct: 133 RRDANEQFKKLVKDKAISEDDERRGQDEVQKLTDRFVSEVDKLVAEKDKEIM 184 >gi|225388995|ref|ZP_03758719.1| hypothetical protein CLOSTASPAR_02740 [Clostridium asparagiforme DSM 15981] gi|225044935|gb|EEG55181.1| hypothetical protein CLOSTASPAR_02740 [Clostridium asparagiforme DSM 15981] Length = 183 Score = 151 bits (381), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 74/179 (41%), Positives = 111/179 (62%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 +L+ +D+M T+ L+ + +R GR +P +LD +KV+ YG+ PL QV N++V E RM Sbjct: 3 ELKKYEDKMNKTLDVLEDEFGAIRAGRANPHVLDKIKVDYYGTPTPLQQVGNISVPEARM 62 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 +V+ W+K ++ +E+ I S LG+NP +G +R+ PE TE+RR L K +++ Sbjct: 63 IVIQPWEKSLIKPIEKAILTSELGINPNNDGNAIRLIFPELTEDRRKELAKDVKKKGDQA 122 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 K+++RNIRRD MD KK KSG SED E +QK+TD I+ +D E K KEIM Sbjct: 123 KVAIRNIRRDAMDAFKKMEKSGDMSEDDRDLAEEKMQKLTDKMIEKVDKAVETKTKEIM 181 >gi|311280859|ref|YP_003943090.1| ribosome recycling factor [Enterobacter cloacae SCF1] gi|308750054|gb|ADO49806.1| ribosome recycling factor [Enterobacter cloacae SCF1] Length = 185 Score = 151 bits (381), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 74/174 (42%), Positives = 112/174 (64%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM + K + +RTGR SPS+LD + VE YG+ PL Q+A+VTV + R L ++V+D Sbjct: 12 RMEKCVEAFKTQISKVRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + M +VE+ I S+LGLNP G +R+P+P TEERR L K+ AE+++++VRN+ Sbjct: 72 RSMSPAVEKAIMASDLGLNPSSAGTDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD D +K K + SED ++D+QK+TD+ IK +D+ +K+ E+M F Sbjct: 132 RRDANDKVKALLKEKEISEDDDRRSQDDVQKMTDAAIKKVDAALADKEAELMQF 185 >gi|28378683|ref|NP_785575.1| ribosome recycling factor [Lactobacillus plantarum WCFS1] gi|254556881|ref|YP_003063298.1| ribosome recycling factor [Lactobacillus plantarum JDM1] gi|300768196|ref|ZP_07078101.1| ribosome recycling factor [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180824|ref|YP_003924952.1| ribosome recycling factor [Lactobacillus plantarum subsp. plantarum ST-III] gi|34924944|sp|Q88VJ7|RRF_LACPL RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|28271519|emb|CAD64424.1| ribosome recycling factor [Lactobacillus plantarum WCFS1] gi|254045808|gb|ACT62601.1| ribosome recycling factor [Lactobacillus plantarum JDM1] gi|300494260|gb|EFK29423.1| ribosome recycling factor [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308046315|gb|ADN98858.1| ribosome recycling factor [Lactobacillus plantarum subsp. plantarum ST-III] Length = 187 Score = 151 bits (381), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 69/179 (38%), Positives = 119/179 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ ++RM + L++++ +R GR + S+L+ + + YG+ PLNQ+A +TV EPR+L Sbjct: 8 LKEAQERMKKAEAALQRELGNIRAGRANASLLNRISADYYGAQTPLNQMAAITVPEPRVL 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + +E+ I S+LG++P +G +R+ +P+ TEERR L K A E++K Sbjct: 68 MVTPFDKSALKEIEKAILASDLGISPANDGSAIRLVIPQLTEERRKELAKDVKAEGERAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRN+RRD M+ LKK K G+ ++D + LE+ QK+TD K++D+ +K+KEI+ Sbjct: 128 VAVRNVRRDAMEALKKGHKDGQFTDDQLHQLEDQAQKLTDQAGKDVDAIVADKEKEILE 186 >gi|325661706|ref|ZP_08150329.1| ribosome-recycling factor [Lachnospiraceae bacterium 4_1_37FAA] gi|325471959|gb|EGC75174.1| ribosome-recycling factor [Lachnospiraceae bacterium 4_1_37FAA] Length = 183 Score = 150 bits (380), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 80/184 (43%), Positives = 117/184 (63%), Gaps = 3/184 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 MN+ +++ N ++M + + L ++ T+R GR +P +LD + V+ YGS P+ QVANV+V Sbjct: 1 MNERLNVFN--EKMEKSYNSLTSELATIRAGRANPHVLDKLTVDYYGSPTPIQQVANVSV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E RM+ + W+K MV +E+ I S++G+NP +G V+R+ PE TEERR LVK Sbjct: 59 PEARMIQIQPWEKSMVREIEKAILTSDIGINPTNDGTVIRLVFPELTEERRKELVKDVKK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E K++VRNIRRDG D KK K + SED + LE+++QK+TD I ID E K Sbjct: 119 KGEAGKVAVRNIRRDGNDTFKK-LKGTEVSEDEIKDLEDELQKLTDKYIAQIDKAVEAKS 177 Query: 181 KEIM 184 KE+M Sbjct: 178 KEVM 181 >gi|229824123|ref|ZP_04450192.1| hypothetical protein GCWU000282_01427 [Catonella morbi ATCC 51271] gi|229786477|gb|EEP22591.1| hypothetical protein GCWU000282_01427 [Catonella morbi ATCC 51271] Length = 191 Score = 150 bits (380), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 72/179 (40%), Positives = 117/179 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +++ K RM T+ ++++ ++R GR + S+LD + VE YG PLNQ+A++T+ E RML Sbjct: 12 IKDTKQRMQKTVDAYQRELGSIRAGRANASILDRISVEYYGVPTPLNQLASITIPEARML 71 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK + +E+ I S++G+ P +G V+R+ +P T+ERR L K E +K Sbjct: 72 LITPYDKGTLGDIEKAILMSDVGITPSNDGSVVRLVIPALTQERRQELAKTVGKEQEGAK 131 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 + VRNIRRD +DH KK+ K+ + +ED + LE DIQK+TD +K I+ EK+KEI+ Sbjct: 132 VRVRNIRRDAIDHAKKAEKNKEITEDDLKGLEKDIQKLTDDFVKEIEKLTAEKEKEILE 190 >gi|261419452|ref|YP_003253134.1| ribosome recycling factor [Geobacillus sp. Y412MC61] gi|261375909|gb|ACX78652.1| ribosome recycling factor [Geobacillus sp. Y412MC61] Length = 186 Score = 150 bits (380), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 71/179 (39%), Positives = 117/179 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q K++M + +++ ++R GR + +L+ V V+ YG P+NQ+A+++V E R+L Sbjct: 7 IQQAKEKMDKAVQAFTRELASIRAGRANAGLLEKVTVDYYGVPTPINQLASISVPEARLL 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +DK + +E+ I S+LGL P +G V+R+ +P TEERR L K+ Y+E +K Sbjct: 67 VIQPYDKSAIKEMEKAILASDLGLTPSNDGSVIRLVIPPLTEERRRELAKLVKKYSEDAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRNIRRD D LKK K+G+ +ED + S +++QK+TD I ID+ +EK+KE+M Sbjct: 127 VAVRNIRRDANDELKKLEKNGEITEDELRSYTDEVQKLTDDHIAKIDAITKEKEKEVME 185 >gi|56419787|ref|YP_147105.1| ribosome recycling factor [Geobacillus kaustophilus HTA426] gi|297530573|ref|YP_003671848.1| ribosome recycling factor [Geobacillus sp. C56-T3] gi|319766267|ref|YP_004131768.1| ribosome recycling factor [Geobacillus sp. Y412MC52] gi|60390228|sp|Q5L0J9|RRF_GEOKA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|56379629|dbj|BAD75537.1| ribosome recycling factor [Geobacillus kaustophilus HTA426] gi|297253825|gb|ADI27271.1| ribosome recycling factor [Geobacillus sp. C56-T3] gi|317111133|gb|ADU93625.1| ribosome recycling factor [Geobacillus sp. Y412MC52] Length = 185 Score = 150 bits (380), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 71/179 (39%), Positives = 117/179 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q K++M + +++ ++R GR + +L+ V V+ YG P+NQ+A+++V E R+L Sbjct: 6 IQQAKEKMDKAVQAFTRELASIRAGRANAGLLEKVTVDYYGVPTPINQLASISVPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +DK + +E+ I S+LGL P +G V+R+ +P TEERR L K+ Y+E +K Sbjct: 66 VIQPYDKSAIKEMEKAILASDLGLTPSNDGSVIRLVIPPLTEERRRELAKLVKKYSEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRNIRRD D LKK K+G+ +ED + S +++QK+TD I ID+ +EK+KE+M Sbjct: 126 VAVRNIRRDANDELKKLEKNGEITEDELRSYTDEVQKLTDDHIAKIDAITKEKEKEVME 184 >gi|17546126|ref|NP_519528.1| ribosome recycling factor [Ralstonia solanacearum GMI1000] gi|22001940|sp|Q8XZI8|RRF_RALSO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|17428422|emb|CAD15109.1| probable ribosome recycling factor (ribosome-releasing factor) (rrf) protein [Ralstonia solanacearum GMI1000] Length = 186 Score = 150 bits (380), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 74/172 (43%), Positives = 111/172 (64%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M +I K D+ +RTGR +LD V+V+ YGS VP++QVAN+ + + R + V W+ Sbjct: 13 KMQKSIDAFKADLAKVRTGRAHTGLLDHVQVDYYGSMVPISQVANLGLADARTISVQPWE 72 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K+MV++VER I +++LGLNP G+V+R+P+P TEERR L KV + E +K++VRN+ Sbjct: 73 KKMVSAVERAIRDADLGLNPATMGEVIRVPMPPLTEERRKELTKVVKSEGEDAKVAVRNV 132 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD + KK K SED ++++QK+TD + +D EK KEIM Sbjct: 133 RRDANEQFKKLVKDKAISEDDERRGQDEVQKLTDRFVAEVDKLVAEKDKEIM 184 >gi|289434595|ref|YP_003464467.1| hypothetical protein lse_1230 [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170839|emb|CBH27381.1| frr [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313638109|gb|EFS03374.1| ribosome recycling factor [Listeria seeligeri FSL S4-171] Length = 185 Score = 150 bits (380), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 74/180 (41%), Positives = 121/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K++M L + + T+R GR + S+LD + V+ YG+ P+NQ+A++++ E RML Sbjct: 6 LTKSKEKMEKAEQALTRQLGTIRAGRANASLLDRLTVDYYGAATPVNQMASISIPEARML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK ++ +E+ I +S+LGL P +G VLR+ +P+ TEERR LVK AE++K Sbjct: 66 LITPYDKTILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRR+ + LKK K+G +ED + S D+QK+TD +IKNID+ ++K+ EI+ Sbjct: 126 VAVRNIRREANEDLKKLEKNGDITEDDLRSYGEDVQKLTDESIKNIDNITKDKEAEILEV 185 >gi|313633414|gb|EFS00248.1| ribosome recycling factor [Listeria seeligeri FSL N1-067] Length = 176 Score = 150 bits (380), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 73/176 (41%), Positives = 120/176 (68%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K++M L + + T+R GR + S+LD + V+ YG+ P+NQ+A++++ E RML+++ Sbjct: 1 KEKMEKAEQALTRQLGTIRAGRANASLLDRLTVDYYGAATPVNQMASISIPEARMLLITP 60 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +DK ++ +E+ I +S+LGL P +G VLR+ +P+ TEERR LVK AE++K++VR Sbjct: 61 YDKTILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAKVAVR 120 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 NIRR+ + LKK K+G +ED + S D+QK+TD +IKNID+ ++K+ EI+ Sbjct: 121 NIRREANEDLKKLEKNGDITEDDLRSYGEDVQKLTDESIKNIDNITKDKEAEILEV 176 >gi|194289789|ref|YP_002005696.1| ribosome recycling factor [Cupriavidus taiwanensis LMG 19424] gi|238692748|sp|B3R2B4|RRF_CUPTR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|193223624|emb|CAQ69631.1| ribosome releasing factor [Cupriavidus taiwanensis LMG 19424] Length = 186 Score = 150 bits (380), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 74/177 (41%), Positives = 113/177 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + +M +I K D+ +RTGR +LD V+V+ YGS VP++QVA + + + R + Sbjct: 8 KSAEQKMQKSIEAFKADLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVAAIGLADARTIT 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K+MV++VE+ I + +LGLNP G+V+R+P+P TEERR L KV AE +K+ Sbjct: 68 VQPWEKKMVSAVEKAIRDCDLGLNPATMGEVIRVPMPALTEERRKELTKVVKGEAEGAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +VRN+RRD + KK K SED ++++QK+TD + ID EK+KEIM Sbjct: 128 AVRNLRRDANEQFKKLVKDKTISEDEERRGQDEVQKLTDKYVAEIDRMVAEKEKEIM 184 >gi|325478712|gb|EGC81823.1| ribosome recycling factor [Anaerococcus prevotii ACS-065-V-Col13] Length = 186 Score = 150 bits (380), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 69/174 (39%), Positives = 110/174 (63%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 +D M + + + T++ GR + ++LD + YG+ P+NQ A V+V E R+L++ Sbjct: 11 QDEMAKAVDSFENRIATIKAGRATEAVLDGITFSYYGTETPINQAATVSVPEARLLMIKP 70 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 WDK + +E+ I +SN+G+ P +G+V+R+P P+ TEERR K YAE +KI +R Sbjct: 71 WDKSNIGPIEKAILKSNIGITPQNDGEVIRLPFPQLTEERRKEYTKQVDTYAEDAKIVIR 130 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 N RR+ MD +KKS KSG +ED +LE++IQKI D I+ +++ +K KE+M Sbjct: 131 NKRREAMDEVKKSEKSGDVTEDDRYTLEDEIQKIADKNIEEVEALANKKNKELM 184 >gi|71907375|ref|YP_284962.1| ribosome recycling factor [Dechloromonas aromatica RCB] gi|71846996|gb|AAZ46492.1| ribosome recycling factor [Dechloromonas aromatica RCB] Length = 198 Score = 150 bits (380), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 70/174 (40%), Positives = 111/174 (63%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M ++ L+ D+ +RTGR +LD V+V+ YGS VP+NQVANVT+++ R + V W+ Sbjct: 25 KMQKSLEALRLDLQKVRTGRAHTGLLDHVQVDYYGSMVPVNQVANVTLVDARTIGVQPWE 84 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K M+ VE+ I + +LGLNP +G ++R+P+P TEERR ++K+ E K+++RN+ Sbjct: 85 KGMLQKVEKAIRDCDLGLNPASQGDLIRVPMPALTEERRKEMIKIVRTEGEGVKVAIRNL 144 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD + HLK + K G+ ED ++D+QK+TD I +D K+ E+M Sbjct: 145 RRDAITHLKDALKKGEIPEDDERKAQDDVQKLTDRYIVEVDKMLATKEAELMQV 198 >gi|257055044|ref|YP_003132876.1| ribosome recycling factor [Saccharomonospora viridis DSM 43017] gi|256584916|gb|ACU96049.1| ribosome recycling factor [Saccharomonospora viridis DSM 43017] Length = 185 Score = 150 bits (380), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 67/179 (37%), Positives = 117/179 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++M +SF K+++ ++RTGR +P+M + VE YG+ PLNQ+A+V + E RM Sbjct: 6 LFDAEEKMEKAVSFAKEELASVRTGRATPAMFSRIVVEYYGAPTPLNQLASVNIPEARMA 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D +A++E+ I ES+LG+NP +G ++R+ +P+ TEERR +VK+A E+++ Sbjct: 66 IIKPYDGSQLANIEKAIRESDLGVNPTNDGSIIRVVIPQLTEERRKEMVKIAKGKGEEAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 IS+R IRR + L + K G+A ED VA E ++Q +TD + +D + K+ E++ Sbjct: 126 ISIRGIRRKAKEELDRIAKDGEAGEDEVARAEKELQNLTDRYVHQVDELVKNKEAELLE 184 >gi|157364644|ref|YP_001471411.1| ribosome recycling factor [Thermotoga lettingae TMO] gi|166991560|sp|A8F863|RRF_THELT RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|157315248|gb|ABV34347.1| ribosome recycling factor [Thermotoga lettingae TMO] Length = 185 Score = 150 bits (380), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 73/179 (40%), Positives = 114/179 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++N +DRM + + +++ +RTGR SP++L+ +KV+ YG+ P++Q+A V + E R L Sbjct: 6 VKNAEDRMNKAVEKISEELRKMRTGRPSPAILEEIKVDYYGAQTPISQLATVNITEDRAL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WD+ +++S+E+ I S+LGL P +G V+R+ P T E+R K A AE+ K Sbjct: 66 IIKPWDRSVLSSIEKAIFASDLGLTPQNDGNVIRLTFPTPTTEQRQKWAKKAKEIAEQGK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 I++RNIRRD + LK K GK SED +E +IQ +TD I ID E+K+KEIM Sbjct: 126 IAIRNIRRDILKELKGDTKDGKISEDDEKRIEKEIQDLTDKKILEIDKLLEKKEKEIME 184 >gi|148982441|ref|ZP_01816756.1| ribosome recycling factor [Vibrionales bacterium SWAT-3] gi|145960478|gb|EDK25851.1| ribosome recycling factor [Vibrionales bacterium SWAT-3] Length = 185 Score = 150 bits (380), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 74/179 (41%), Positives = 112/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ L+ + +RTGR PS+L + VE YG+ PL QVANV + R L Sbjct: 7 KDAQERMEKSVDALRNSLQKIRTGRAHPSLLSGLTVEYYGAPTPLTQVANVIAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DK + VE+ I S+LGLNP+ G V+R+P+P TEERR LVK+ AE ++ Sbjct: 67 ITVFDKTLTPLVEKAIMTSDLGLNPMSAGTVIRVPLPPLTEERRKDLVKIVRGEAEGGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD LK K + SED +++IQK+TD+ +KN+D K+KE+M Sbjct: 127 AIRNIRRDANGDLKALLKDKEISEDEDRKAQDEIQKLTDAAVKNVDEVLATKEKELMEV 185 >gi|152980540|ref|YP_001353745.1| ribosome recycling factor [Janthinobacterium sp. Marseille] gi|166230794|sp|A6SZP8|RRF_JANMA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|151280617|gb|ABR89027.1| ribosome recycling factor [Janthinobacterium sp. Marseille] Length = 186 Score = 150 bits (380), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 81/182 (44%), Positives = 118/182 (64%), Gaps = 1/182 (0%) Query: 4 VIDLQNIKD-RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLE 62 V D + D +M +I LK D+ +RTGR +LD V VE YG+ L+QVANVT+++ Sbjct: 3 VADAKKTADQKMQKSIETLKADLAKVRTGRAHTGILDHVMVEYYGNPTNLSQVANVTLID 62 Query: 63 PRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 R + V ++K+MVA VE+ I E++LGLNP +G+++R+P P TEERR +VK+ + A Sbjct: 63 ARTIGVQPFEKKMVAVVEKAIREADLGLNPATQGELIRVPTPPLTEERRKEMVKLVKSEA 122 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 E +KI+VRNIRRD + LKK K SED +++IQK+TD + ID EK+KE Sbjct: 123 EDAKIAVRNIRRDANESLKKLVKEKACSEDEERRAQDEIQKLTDKFVIEIDKLVVEKEKE 182 Query: 183 IM 184 ++ Sbjct: 183 VL 184 >gi|116792122|gb|ABK26242.1| unknown [Picea sitchensis] Length = 173 Score = 150 bits (380), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 77/171 (45%), Positives = 112/171 (65%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M T+ +K + ++RTGR SP+ LD V+VE YGS V L +A V+V + L+V +DK Sbjct: 1 MEKTLETIKTNFNSIRTGRASPAFLDRVEVEYYGSPVNLKSLAQVSVPDGGTLLVQPYDK 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 + S+E+ I +SNLGL P +G V+R+ +P+ T ERR L+KV AE+ KI++RNIR Sbjct: 61 SSLKSIEKAISKSNLGLTPSNDGNVIRLSIPQLTSERRKELLKVVAKIAEEGKIAIRNIR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RD + +K K K SED V L D+QK+TD IK +DS +++K+KE+M Sbjct: 121 RDAIKAYEKLEKEKKLSEDNVKDLSGDLQKVTDEFIKKVDSLYKQKEKELM 171 >gi|15799854|ref|NP_285866.1| ribosome recycling factor [Escherichia coli O157:H7 EDL933] gi|15829428|ref|NP_308201.1| ribosome recycling factor [Escherichia coli O157:H7 str. Sakai] gi|16128165|ref|NP_414714.1| ribosome recycling factor [Escherichia coli str. K-12 substr. MG1655] gi|24111607|ref|NP_706117.1| ribosome recycling factor [Shigella flexneri 2a str. 301] gi|26246119|ref|NP_752158.1| ribosome recycling factor [Escherichia coli CFT073] gi|30061729|ref|NP_835900.1| ribosome recycling factor [Shigella flexneri 2a str. 2457T] gi|74310792|ref|YP_309211.1| ribosome recycling factor [Shigella sonnei Ss046] gi|82542771|ref|YP_406718.1| ribosome recycling factor [Shigella boydii Sb227] gi|82775562|ref|YP_401909.1| ribosome recycling factor [Shigella dysenteriae Sd197] gi|89107052|ref|AP_000832.1| ribosome recycling factor [Escherichia coli str. K-12 substr. W3110] gi|91209242|ref|YP_539228.1| ribosome recycling factor [Escherichia coli UTI89] gi|110640391|ref|YP_668119.1| ribosome recycling factor [Escherichia coli 536] gi|110804224|ref|YP_687744.1| ribosome recycling factor [Shigella flexneri 5 str. 8401] gi|157155211|ref|YP_001461341.1| ribosome recycling factor [Escherichia coli E24377A] gi|157159637|ref|YP_001456955.1| ribosome recycling factor [Escherichia coli HS] gi|168751391|ref|ZP_02776413.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4113] gi|168755785|ref|ZP_02780792.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4401] gi|168764321|ref|ZP_02789328.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4501] gi|168770354|ref|ZP_02795361.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4486] gi|168777009|ref|ZP_02802016.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4196] gi|168782064|ref|ZP_02807071.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4076] gi|168789281|ref|ZP_02814288.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC869] gi|170021475|ref|YP_001726429.1| ribosome recycling factor [Escherichia coli ATCC 8739] gi|170079808|ref|YP_001729128.1| ribosome recycling factor [Escherichia coli str. K-12 substr. DH10B] gi|170683322|ref|YP_001742300.1| ribosome recycling factor [Escherichia coli SMS-3-5] gi|187731916|ref|YP_001878974.1| ribosome recycling factor [Shigella boydii CDC 3083-94] gi|188496088|ref|ZP_03003358.1| ribosome releasing factor [Escherichia coli 53638] gi|191166361|ref|ZP_03028193.1| ribosome releasing factor [Escherichia coli B7A] gi|191172803|ref|ZP_03034340.1| ribosome releasing factor [Escherichia coli F11] gi|193063223|ref|ZP_03044314.1| ribosome releasing factor [Escherichia coli E22] gi|193067565|ref|ZP_03048532.1| ribosome releasing factor [Escherichia coli E110019] gi|194428316|ref|ZP_03060858.1| ribosome releasing factor [Escherichia coli B171] gi|194433418|ref|ZP_03065697.1| ribosome releasing factor [Shigella dysenteriae 1012] gi|194439153|ref|ZP_03071235.1| ribosome releasing factor [Escherichia coli 101-1] gi|195938146|ref|ZP_03083528.1| ribosome recycling factor [Escherichia coli O157:H7 str. EC4024] gi|208809164|ref|ZP_03251501.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4206] gi|208812775|ref|ZP_03254104.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4045] gi|208819126|ref|ZP_03259446.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4042] gi|209398036|ref|YP_002268780.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4115] gi|209917362|ref|YP_002291446.1| ribosome recycling factor [Escherichia coli SE11] gi|215485333|ref|YP_002327764.1| ribosome recycling factor [Escherichia coli O127:H6 str. E2348/69] gi|217325138|ref|ZP_03441222.1| ribosome releasing factor [Escherichia coli O157:H7 str. TW14588] gi|218547627|ref|YP_002381418.1| ribosome recycling factor [Escherichia fergusonii ATCC 35469] gi|218552752|ref|YP_002385665.1| ribosome recycling factor [Escherichia coli IAI1] gi|218557113|ref|YP_002390026.1| ribosome recycling factor [Escherichia coli S88] gi|218688047|ref|YP_002396259.1| ribosome recycling factor [Escherichia coli ED1a] gi|218693637|ref|YP_002401304.1| ribosome recycling factor [Escherichia coli 55989] gi|218698592|ref|YP_002406221.1| ribosome recycling factor [Escherichia coli IAI39] gi|218703426|ref|YP_002410945.1| ribosome recycling factor [Escherichia coli UMN026] gi|227884915|ref|ZP_04002720.1| ribosome recycling factor [Escherichia coli 83972] gi|237704331|ref|ZP_04534812.1| ribosome-recycling factor [Escherichia sp. 3_2_53FAA] gi|238899570|ref|YP_002925366.1| ribosome recycling factor [Escherichia coli BW2952] gi|253774801|ref|YP_003037632.1| ribosome recycling factor [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254037591|ref|ZP_04871668.1| ribosome-recycling factor [Escherichia sp. 1_1_43] gi|254160291|ref|YP_003043399.1| ribosome recycling factor [Escherichia coli B str. REL606] gi|254791305|ref|YP_003076142.1| ribosome recycling factor [Escherichia coli O157:H7 str. TW14359] gi|256021604|ref|ZP_05435469.1| ribosome recycling factor [Shigella sp. D9] gi|256025484|ref|ZP_05439349.1| ribosome recycling factor [Escherichia sp. 4_1_40B] gi|260842404|ref|YP_003220182.1| ribosome recycling factor [Escherichia coli O103:H2 str. 12009] gi|260853382|ref|YP_003227273.1| ribosome recycling factor [Escherichia coli O26:H11 str. 11368] gi|260866321|ref|YP_003232723.1| ribosome recycling factor [Escherichia coli O111:H- str. 11128] gi|261226926|ref|ZP_05941207.1| ribosome recycling factor [Escherichia coli O157:H7 str. FRIK2000] gi|261255330|ref|ZP_05947863.1| ribosome recycling factor [Escherichia coli O157:H7 str. FRIK966] gi|291280994|ref|YP_003497812.1| Ribosome recycling factor [Escherichia coli O55:H7 str. CB9615] gi|293403241|ref|ZP_06647338.1| frr [Escherichia coli FVEC1412] gi|293408264|ref|ZP_06652104.1| ribosome recycling factor [Escherichia coli B354] gi|293418057|ref|ZP_06660679.1| ribosome recycling factor [Escherichia coli B185] gi|293476829|ref|ZP_06665237.1| ribosome recycling factor [Escherichia coli B088] gi|297521925|ref|ZP_06940311.1| ribosome recycling factor [Escherichia coli OP50] gi|298378777|ref|ZP_06988661.1| ribosome-recycling factor [Escherichia coli FVEC1302] gi|300816212|ref|ZP_07096435.1| ribosome recycling factor [Escherichia coli MS 107-1] gi|300824105|ref|ZP_07104225.1| ribosome recycling factor [Escherichia coli MS 119-7] gi|300900790|ref|ZP_07118934.1| ribosome recycling factor [Escherichia coli MS 198-1] gi|300901991|ref|ZP_07120018.1| ribosome recycling factor [Escherichia coli MS 84-1] gi|300920146|ref|ZP_07136597.1| ribosome recycling factor [Escherichia coli MS 115-1] gi|300923036|ref|ZP_07139103.1| ribosome recycling factor [Escherichia coli MS 182-1] gi|300932126|ref|ZP_07147411.1| ribosome recycling factor [Escherichia coli MS 187-1] gi|300938579|ref|ZP_07153312.1| ribosome recycling factor [Escherichia coli MS 21-1] gi|300949796|ref|ZP_07163770.1| ribosome recycling factor [Escherichia coli MS 116-1] gi|300956055|ref|ZP_07168380.1| ribosome recycling factor [Escherichia coli MS 175-1] gi|300984932|ref|ZP_07177197.1| ribosome recycling factor [Escherichia coli MS 200-1] gi|300993607|ref|ZP_07180463.1| ribosome recycling factor [Escherichia coli MS 45-1] gi|301025948|ref|ZP_07189432.1| ribosome recycling factor [Escherichia coli MS 69-1] gi|301028665|ref|ZP_07191886.1| ribosome recycling factor [Escherichia coli MS 196-1] gi|301049915|ref|ZP_07196840.1| ribosome recycling factor [Escherichia coli MS 185-1] gi|301305308|ref|ZP_07211404.1| ribosome recycling factor [Escherichia coli MS 124-1] gi|301330030|ref|ZP_07222714.1| ribosome recycling factor [Escherichia coli MS 78-1] gi|301646495|ref|ZP_07246370.1| ribosome recycling factor [Escherichia coli MS 146-1] gi|306815228|ref|ZP_07449377.1| ribosome recycling factor [Escherichia coli NC101] gi|307136772|ref|ZP_07496128.1| ribosome recycling factor [Escherichia coli H736] gi|307311381|ref|ZP_07591023.1| ribosome recycling factor [Escherichia coli W] gi|309796349|ref|ZP_07690758.1| ribosome recycling factor [Escherichia coli MS 145-7] gi|312966308|ref|ZP_07780534.1| ribosome recycling factor [Escherichia coli 2362-75] gi|312970272|ref|ZP_07784454.1| ribosome recycling factor [Escherichia coli 1827-70] gi|331640626|ref|ZP_08341774.1| ribosome recycling factor [Escherichia coli H736] gi|331645315|ref|ZP_08346426.1| ribosome recycling factor [Escherichia coli M605] gi|331651077|ref|ZP_08352105.1| ribosome recycling factor [Escherichia coli M718] gi|331661243|ref|ZP_08362175.1| ribosome recycling factor [Escherichia coli TA206] gi|331661546|ref|ZP_08362470.1| ribosome recycling factor [Escherichia coli TA143] gi|331666413|ref|ZP_08367294.1| ribosome recycling factor [Escherichia coli TA271] gi|331671678|ref|ZP_08372476.1| ribosome recycling factor [Escherichia coli TA280] gi|331680751|ref|ZP_08381410.1| ribosome recycling factor [Escherichia coli H591] gi|331681557|ref|ZP_08382194.1| ribosome recycling factor [Escherichia coli H299] gi|332282846|ref|ZP_08395259.1| ribosome-recycling factor [Shigella sp. D9] gi|67472290|sp|P0A805|RRF_ECOLI RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|67472291|sp|P0A806|RRF_ECOL6 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|67472292|sp|P0A807|RRF_ECO57 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|67472293|sp|P0A808|RRF_SHIFL RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|122424957|sp|Q1RG17|RRF_ECOUT RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|123147265|sp|Q0T837|RRF_SHIF8 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|123148410|sp|Q0TLG1|RRF_ECOL5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|123560535|sp|Q325W8|RRF_SHIBS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|123563477|sp|Q32JT7|RRF_SHIDS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|123618027|sp|Q3Z5I6|RRF_SHISS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166991554|sp|A7ZHR2|RRF_ECO24 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166991555|sp|A7ZWB8|RRF_ECOHS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|189044054|sp|B1IQG9|RRF_ECOLC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226703260|sp|B7MBF3|RRF_ECO45 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226703261|sp|B7NID4|RRF_ECO7I RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226703262|sp|B7M1X4|RRF_ECO8A RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226703263|sp|B7N839|RRF_ECOLU RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226703264|sp|B1LGX4|RRF_ECOSM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226703265|sp|B7LWB1|RRF_ESCF3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226749928|sp|B5Z0F1|RRF_ECO5E RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226749929|sp|B6HZE6|RRF_ECOSE RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|229564224|sp|B1XD41|RRF_ECODH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238689500|sp|B2U315|RRF_SHIB3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|254809510|sp|B7UIL7|RRF_ECO27 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|254809511|sp|B7LGN3|RRF_ECO55 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|254809512|sp|B7MP32|RRF_ECO81 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|259494540|sp|C4ZRR4|RRF_ECOBW RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|13399451|pdb|1EK8|A Chain A, Crystal Structure Of The Ribosome Recycling Factor (Rrf) From Escherichia Coli gi|71042411|pdb|1ZN0|A Chain A, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The 50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf gi|71042414|pdb|1ZN1|A Chain A, Coordinates Of Rrf Fitted Into Cryo-Em Map Of The 70s Post- Termination Complex gi|169404635|pdb|2RDO|8 Chain 8, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound gi|12512897|gb|AAG54474.1|AE005193_4 ribosome releasing factor [Escherichia coli O157:H7 str. EDL933] gi|26106516|gb|AAN78702.1|AE016755_202 Ribosome recycling factor [Escherichia coli CFT073] gi|147771|gb|AAA24607.1| ribosome releasing factor (gtg start codon) [Escherichia coli] gi|806329|dbj|BAA02599.1| ribosome releasing factor (FRR) [Escherichia coli] gi|1552749|gb|AAB08601.1| ribosome release factor [Escherichia coli] gi|1786368|gb|AAC73283.1| ribosome recycling factor [Escherichia coli str. K-12 substr. MG1655] gi|13359630|dbj|BAB33597.1| ribosome releasing factor [Escherichia coli O157:H7 str. Sakai] gi|21239027|dbj|BAB96748.1| ribosome recycling factor [Escherichia coli str. K12 substr. W3110] gi|24050375|gb|AAN41824.1| ribosome releasing factor [Shigella flexneri 2a str. 301] gi|30039971|gb|AAP15705.1| ribosome releasing factor [Shigella flexneri 2a str. 2457T] gi|73854269|gb|AAZ86976.1| ribosome releasing factor [Shigella sonnei Ss046] gi|81239710|gb|ABB60420.1| ribosome releasing factor [Shigella dysenteriae Sd197] gi|81244182|gb|ABB64890.1| ribosome releasing factor [Shigella boydii Sb227] gi|91070816|gb|ABE05697.1| ribosome recycling factor [Escherichia coli UTI89] gi|110341983|gb|ABG68220.1| ribosome recycling factor [Escherichia coli 536] gi|110613772|gb|ABF02439.1| ribosome releasing factor [Shigella flexneri 5 str. 8401] gi|157065317|gb|ABV04572.1| ribosome releasing factor [Escherichia coli HS] gi|157077241|gb|ABV16949.1| ribosome recycling factor [Escherichia coli E24377A] gi|169756403|gb|ACA79102.1| ribosome recycling factor [Escherichia coli ATCC 8739] gi|169887643|gb|ACB01350.1| ribosome recycling factor [Escherichia coli str. K-12 substr. DH10B] gi|170521040|gb|ACB19218.1| ribosome releasing factor [Escherichia coli SMS-3-5] gi|187428908|gb|ACD08182.1| ribosome releasing factor [Shigella boydii CDC 3083-94] gi|187767671|gb|EDU31515.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4196] gi|188014582|gb|EDU52704.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4113] gi|188491287|gb|EDU66390.1| ribosome releasing factor [Escherichia coli 53638] gi|189000476|gb|EDU69462.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4076] gi|189357057|gb|EDU75476.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4401] gi|189360728|gb|EDU79147.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4486] gi|189365640|gb|EDU84056.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4501] gi|189371119|gb|EDU89535.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC869] gi|190903612|gb|EDV63329.1| ribosome releasing factor [Escherichia coli B7A] gi|190906953|gb|EDV66555.1| ribosome releasing factor [Escherichia coli F11] gi|192931131|gb|EDV83734.1| ribosome releasing factor [Escherichia coli E22] gi|192958977|gb|EDV89413.1| ribosome releasing factor [Escherichia coli E110019] gi|194413691|gb|EDX29971.1| ribosome releasing factor [Escherichia coli B171] gi|194418346|gb|EDX34436.1| ribosome releasing factor [Shigella dysenteriae 1012] gi|194421972|gb|EDX37977.1| ribosome releasing factor [Escherichia coli 101-1] gi|208728965|gb|EDZ78566.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4206] gi|208734052|gb|EDZ82739.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4045] gi|208739249|gb|EDZ86931.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4042] gi|209159436|gb|ACI36869.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4115] gi|209745824|gb|ACI71219.1| ribosome releasing factor [Escherichia coli] gi|209745826|gb|ACI71220.1| ribosome releasing factor [Escherichia coli] gi|209745828|gb|ACI71221.1| ribosome releasing factor [Escherichia coli] gi|209745830|gb|ACI71222.1| ribosome releasing factor [Escherichia coli] gi|209745832|gb|ACI71223.1| ribosome releasing factor [Escherichia coli] gi|209910621|dbj|BAG75695.1| ribosome releasing factor [Escherichia coli SE11] gi|215263405|emb|CAS07725.1| ribosome recycling factor [Escherichia coli O127:H6 str. E2348/69] gi|217321359|gb|EEC29783.1| ribosome releasing factor [Escherichia coli O157:H7 str. TW14588] gi|218350369|emb|CAU96052.1| ribosome recycling factor [Escherichia coli 55989] gi|218355168|emb|CAQ87775.1| ribosome recycling factor [Escherichia fergusonii ATCC 35469] gi|218359520|emb|CAQ97058.1| ribosome recycling factor [Escherichia coli IAI1] gi|218363882|emb|CAR01547.1| ribosome recycling factor [Escherichia coli S88] gi|218368578|emb|CAR16315.1| ribosome recycling factor [Escherichia coli IAI39] gi|218425611|emb|CAR06397.1| ribosome recycling factor [Escherichia coli ED1a] gi|218430523|emb|CAR11389.1| ribosome recycling factor [Escherichia coli UMN026] gi|222032002|emb|CAP74741.1| ribosome recycling factor [Escherichia coli LF82] gi|226840697|gb|EEH72699.1| ribosome-recycling factor [Escherichia sp. 1_1_43] gi|226902243|gb|EEH88502.1| ribosome-recycling factor [Escherichia sp. 3_2_53FAA] gi|227838053|gb|EEJ48519.1| ribosome recycling factor [Escherichia coli 83972] gi|238863488|gb|ACR65486.1| ribosome recycling factor [Escherichia coli BW2952] gi|242376003|emb|CAQ30686.1| ribosome recycling factor [Escherichia coli BL21(DE3)] gi|253325845|gb|ACT30447.1| ribosome recycling factor [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972192|gb|ACT37863.1| ribosome releasing factor [Escherichia coli B str. REL606] gi|253976401|gb|ACT42071.1| ribosome releasing factor [Escherichia coli BL21(DE3)] gi|254590705|gb|ACT70066.1| ribosome recycling factor [Escherichia coli O157:H7 str. TW14359] gi|257752031|dbj|BAI23533.1| ribosome recycling factor [Escherichia coli O26:H11 str. 11368] gi|257757551|dbj|BAI29048.1| ribosome recycling factor [Escherichia coli O103:H2 str. 12009] gi|257762677|dbj|BAI34172.1| ribosome recycling factor [Escherichia coli O111:H- str. 11128] gi|260450624|gb|ACX41046.1| ribosome recycling factor [Escherichia coli DH1] gi|281177397|dbj|BAI53727.1| ribosome releasing factor [Escherichia coli SE15] gi|281599527|gb|ADA72511.1| Ribosome recycling factor [Shigella flexneri 2002017] gi|284919947|emb|CBG33002.1| ribosome recycling factor [Escherichia coli 042] gi|290760867|gb|ADD54828.1| Ribosome recycling factor [Escherichia coli O55:H7 str. CB9615] gi|291321282|gb|EFE60724.1| ribosome recycling factor [Escherichia coli B088] gi|291430156|gb|EFF03170.1| frr [Escherichia coli FVEC1412] gi|291430775|gb|EFF03773.1| ribosome recycling factor [Escherichia coli B185] gi|291472515|gb|EFF14997.1| ribosome recycling factor [Escherichia coli B354] gi|294492515|gb|ADE91271.1| ribosome recycling factor [Escherichia coli IHE3034] gi|298281111|gb|EFI22612.1| ribosome-recycling factor [Escherichia coli FVEC1302] gi|299878297|gb|EFI86508.1| ribosome recycling factor [Escherichia coli MS 196-1] gi|300298344|gb|EFJ54729.1| ribosome recycling factor [Escherichia coli MS 185-1] gi|300306582|gb|EFJ61102.1| ribosome recycling factor [Escherichia coli MS 200-1] gi|300317085|gb|EFJ66869.1| ribosome recycling factor [Escherichia coli MS 175-1] gi|300355739|gb|EFJ71609.1| ribosome recycling factor [Escherichia coli MS 198-1] gi|300395747|gb|EFJ79285.1| ribosome recycling factor [Escherichia coli MS 69-1] gi|300405877|gb|EFJ89415.1| ribosome recycling factor [Escherichia coli MS 84-1] gi|300406530|gb|EFJ90068.1| ribosome recycling factor [Escherichia coli MS 45-1] gi|300412843|gb|EFJ96153.1| ribosome recycling factor [Escherichia coli MS 115-1] gi|300420663|gb|EFK03974.1| ribosome recycling factor [Escherichia coli MS 182-1] gi|300450828|gb|EFK14448.1| ribosome recycling factor [Escherichia coli MS 116-1] gi|300456461|gb|EFK19954.1| ribosome recycling factor [Escherichia coli MS 21-1] gi|300460102|gb|EFK23595.1| ribosome recycling factor [Escherichia coli MS 187-1] gi|300523382|gb|EFK44451.1| ribosome recycling factor [Escherichia coli MS 119-7] gi|300531419|gb|EFK52481.1| ribosome recycling factor [Escherichia coli MS 107-1] gi|300839413|gb|EFK67173.1| ribosome recycling factor [Escherichia coli MS 124-1] gi|300843941|gb|EFK71701.1| ribosome recycling factor [Escherichia coli MS 78-1] gi|301075281|gb|EFK90087.1| ribosome recycling factor [Escherichia coli MS 146-1] gi|305850890|gb|EFM51345.1| ribosome recycling factor [Escherichia coli NC101] gi|306908360|gb|EFN38858.1| ribosome recycling factor [Escherichia coli W] gi|307552022|gb|ADN44797.1| ribosome recycling factor [Escherichia coli ABU 83972] gi|307629748|gb|ADN74052.1| ribosome recycling factor [Escherichia coli UM146] gi|308120053|gb|EFO57315.1| ribosome recycling factor [Escherichia coli MS 145-7] gi|309700380|emb|CBI99668.1| ribosome recycling factor [Escherichia coli ETEC H10407] gi|310337770|gb|EFQ02881.1| ribosome recycling factor [Escherichia coli 1827-70] gi|312289551|gb|EFR17445.1| ribosome recycling factor [Escherichia coli 2362-75] gi|312944780|gb|ADR25607.1| ribosome recycling factor [Escherichia coli O83:H1 str. NRG 857C] gi|313646768|gb|EFS11227.1| ribosome recycling factor [Shigella flexneri 2a str. 2457T] gi|315059390|gb|ADT73717.1| ribosome recycling factor [Escherichia coli W] gi|315134862|dbj|BAJ42021.1| ribosome recycling factor [Escherichia coli DH1] gi|315254974|gb|EFU34942.1| ribosome recycling factor [Escherichia coli MS 85-1] gi|315285261|gb|EFU44706.1| ribosome recycling factor [Escherichia coli MS 110-3] gi|315294576|gb|EFU53923.1| ribosome recycling factor [Escherichia coli MS 153-1] gi|315300676|gb|EFU59903.1| ribosome recycling factor [Escherichia coli MS 16-3] gi|315616344|gb|EFU96962.1| ribosome recycling factor [Escherichia coli 3431] gi|320173347|gb|EFW48550.1| Ribosome recycling factor [Shigella dysenteriae CDC 74-1112] gi|320179914|gb|EFW54858.1| Ribosome recycling factor [Shigella boydii ATCC 9905] gi|320186593|gb|EFW61318.1| Ribosome recycling factor [Shigella flexneri CDC 796-83] gi|320190302|gb|EFW64952.1| Ribosome recycling factor [Escherichia coli O157:H7 str. EC1212] gi|320196952|gb|EFW71573.1| Ribosome recycling factor [Escherichia coli WV_060327] gi|320200303|gb|EFW74889.1| Ribosome recycling factor [Escherichia coli EC4100B] gi|320639978|gb|EFX09563.1| ribosome recycling factor [Escherichia coli O157:H7 str. G5101] gi|320644748|gb|EFX13792.1| ribosome recycling factor [Escherichia coli O157:H- str. 493-89] gi|320652904|gb|EFX21142.1| ribosome recycling factor [Escherichia coli O157:H- str. H 2687] gi|320658292|gb|EFX26021.1| ribosome recycling factor [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663602|gb|EFX30886.1| ribosome recycling factor [Escherichia coli O55:H7 str. USDA 5905] gi|320668915|gb|EFX35710.1| ribosome recycling factor [Escherichia coli O157:H7 str. LSU-61] gi|323157991|gb|EFZ44093.1| ribosome recycling factor [Escherichia coli EPECa14] gi|323160209|gb|EFZ46168.1| ribosome recycling factor [Escherichia coli E128010] gi|323165873|gb|EFZ51655.1| ribosome recycling factor [Shigella sonnei 53G] gi|323170963|gb|EFZ56612.1| ribosome recycling factor [Escherichia coli LT-68] gi|323176486|gb|EFZ62078.1| ribosome recycling factor [Escherichia coli 1180] gi|323181679|gb|EFZ67093.1| ribosome recycling factor [Escherichia coli 1357] gi|323190428|gb|EFZ75703.1| ribosome recycling factor [Escherichia coli RN587/1] gi|323380051|gb|ADX52319.1| ribosome recycling factor [Escherichia coli KO11] gi|323935012|gb|EGB31385.1| ribosome recycling protein [Escherichia coli E1520] gi|323939952|gb|EGB36150.1| ribosome recycling protein [Escherichia coli E482] gi|323945647|gb|EGB41696.1| ribosome recycling protein [Escherichia coli H120] gi|323950829|gb|EGB46706.1| ribosome recycling protein [Escherichia coli H252] gi|323955133|gb|EGB50908.1| ribosome recycling protein [Escherichia coli H263] gi|323959933|gb|EGB55580.1| ribosome recycling protein [Escherichia coli H489] gi|323964935|gb|EGB60401.1| ribosome recycling protein [Escherichia coli M863] gi|323970651|gb|EGB65907.1| ribosome recycling protein [Escherichia coli TA007] gi|323975660|gb|EGB70756.1| ribosome recycling protein [Escherichia coli TW10509] gi|324008234|gb|EGB77453.1| ribosome recycling factor [Escherichia coli MS 57-2] gi|324014110|gb|EGB83329.1| ribosome recycling factor [Escherichia coli MS 60-1] gi|324017821|gb|EGB87040.1| ribosome recycling factor [Escherichia coli MS 117-3] gi|324112417|gb|EGC06394.1| ribosome recycling protein [Escherichia fergusonii B253] gi|324118292|gb|EGC12187.1| ribosome recycling protein [Escherichia coli E1167] gi|325496104|gb|EGC93963.1| ribosome recycling factor [Escherichia fergusonii ECD227] gi|326339773|gb|EGD63581.1| Ribosome recycling factor [Escherichia coli O157:H7 str. 1044] gi|326345108|gb|EGD68851.1| Ribosome recycling factor [Escherichia coli O157:H7 str. 1125] gi|327255151|gb|EGE66754.1| ribosome recycling factor [Escherichia coli STEC_7v] gi|330910022|gb|EGH38532.1| ribosome recycling factor [Escherichia coli AA86] gi|331040372|gb|EGI12579.1| ribosome recycling factor [Escherichia coli H736] gi|331046072|gb|EGI18191.1| ribosome recycling factor [Escherichia coli M605] gi|331051531|gb|EGI23580.1| ribosome recycling factor [Escherichia coli M718] gi|331052285|gb|EGI24324.1| ribosome recycling factor [Escherichia coli TA206] gi|331061461|gb|EGI33424.1| ribosome recycling factor [Escherichia coli TA143] gi|331066624|gb|EGI38501.1| ribosome recycling factor [Escherichia coli TA271] gi|331071523|gb|EGI42880.1| ribosome recycling factor [Escherichia coli TA280] gi|331072214|gb|EGI43550.1| ribosome recycling factor [Escherichia coli H591] gi|331081778|gb|EGI52939.1| ribosome recycling factor [Escherichia coli H299] gi|332095214|gb|EGJ00243.1| ribosome recycling factor [Shigella boydii 5216-82] gi|332098804|gb|EGJ03764.1| ribosome recycling factor [Shigella boydii 3594-74] gi|332105198|gb|EGJ08544.1| ribosome-recycling factor [Shigella sp. D9] gi|332341505|gb|AEE54839.1| ribosome recycling factor [Escherichia coli UMNK88] gi|332762066|gb|EGJ92337.1| ribosome recycling factor [Shigella flexneri 2747-71] gi|332762175|gb|EGJ92444.1| ribosome recycling factor [Shigella flexneri 4343-70] gi|332765019|gb|EGJ95247.1| ribosome recycling factor [Shigella flexneri K-671] gi|332768674|gb|EGJ98854.1| ribosome recycling factor [Shigella flexneri 2930-71] gi|333009268|gb|EGK28724.1| ribosome recycling factor [Shigella flexneri K-218] gi|333010666|gb|EGK30099.1| ribosome recycling factor [Shigella flexneri VA-6] gi|333011010|gb|EGK30429.1| ribosome recycling factor [Shigella flexneri K-272] gi|333021805|gb|EGK41054.1| ribosome recycling factor [Shigella flexneri K-227] gi|333022235|gb|EGK41474.1| ribosome recycling factor [Shigella flexneri K-304] Length = 185 Score = 150 bits (380), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 74/174 (42%), Positives = 112/174 (64%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM + K + +RTGR SPS+LD + VE YG+ PL Q+A+VTV + R L ++V+D Sbjct: 12 RMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + M +VE+ I S+LGLNP G +R+P+P TEERR L K+ AE+++++VRN+ Sbjct: 72 RSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD D +K K + SED ++D+QK+TD+ IK I++ +K+ E+M F Sbjct: 132 RRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAALADKEAELMQF 185 >gi|304396647|ref|ZP_07378528.1| ribosome recycling factor [Pantoea sp. aB] gi|304356156|gb|EFM20522.1| ribosome recycling factor [Pantoea sp. aB] Length = 185 Score = 150 bits (380), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 74/174 (42%), Positives = 113/174 (64%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM + K + +RTGR SPS+LD + VE YG+ PL Q+A+VTV + R L ++V+D Sbjct: 12 RMEKCVEAFKTTISKVRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + + +VE+ I +S+LGLNP G +R+P+P TEERR L+K+ AE+ ++SVRN+ Sbjct: 72 RSLSPAVEKAIMKSDLGLNPSSAGTDIRVPLPALTEERRKDLIKIVRGEAEQGRVSVRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD D +K K + SED ++++QK+TD+ IK +D+ EK+ E+M F Sbjct: 132 RRDANDKIKALLKDKEISEDDERRAQDEVQKMTDAYIKKVDAALSEKESELMDF 185 >gi|209518711|ref|ZP_03267527.1| ribosome recycling factor [Burkholderia sp. H160] gi|209500825|gb|EEA00865.1| ribosome recycling factor [Burkholderia sp. H160] Length = 186 Score = 150 bits (380), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 75/172 (43%), Positives = 109/172 (63%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M +I K D+ +RTGR +LD ++ + YGS VP++QVAN+T+++ R + V W+ Sbjct: 13 KMQRSIDAFKNDLSKIRTGRAHTGLLDHIQCDYYGSPVPISQVANLTLIDARTIGVQPWE 72 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K+MV VE+ I ES LGLNP G V+R+P+P TEERR L KV + AE ++++VRN+ Sbjct: 73 KKMVQVVEKAIRESELGLNPATHGDVIRVPMPALTEERRRELTKVVRSEAETARVAVRNL 132 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD + LKK K + SED +D+QK+TD + ID K+ EIM Sbjct: 133 RRDANEQLKKLVKDKEISEDDERRAGDDVQKLTDKFVAEIDKLVTTKEAEIM 184 >gi|312829653|emb|CBX34495.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus ECT-R 2] Length = 184 Score = 150 bits (380), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 77/176 (43%), Positives = 113/176 (64%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K RM +I L +++ + GR + ++L+ V V+ YG+ P+ Q+A++ V E R+LV+S Sbjct: 9 KSRMQKSIESLSRELANISAGRANSNLLNGVTVDYYGAPTPVQQLASINVPEARLLVISP 68 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +DK VA +E+ I +NLG+NP G+V+RI VP TEERR VK E++K+SVR Sbjct: 69 YDKTSVADIEKAIIAANLGVNPTSNGEVIRIAVPALTEERRKERVKDVKKIGEEAKVSVR 128 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 NIRRD D LKK K+G +ED + S D+QK TD++IK ID +K+K+IM Sbjct: 129 NIRRDMNDQLKKDEKNGDITEDELRSGTEDVQKATDNSIKEIDQMIADKEKDIMSV 184 >gi|212704264|ref|ZP_03312392.1| hypothetical protein DESPIG_02319 [Desulfovibrio piger ATCC 29098] gi|212672344|gb|EEB32827.1| hypothetical protein DESPIG_02319 [Desulfovibrio piger ATCC 29098] Length = 186 Score = 150 bits (380), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 73/180 (40%), Positives = 116/180 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +DRM ++ L++D LRTGR + +++D +K + YG+ P++Q+A+V V + R + Sbjct: 7 LLDTEDRMEKAMAALERDFQKLRTGRATTALVDGIKADYYGTPTPISQMASVAVPDSRTI 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK ++ VE+ I +S+LGL P+ +G+++RI +P TEERR LVKVA Y E +K Sbjct: 67 TIQPWDKGGISVVEKAILKSDLGLTPVNDGRIIRINIPPLTEERRKELVKVARKYTEDAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RRD D LKK K +ED E ++QK+TD + + D + K+KEIM Sbjct: 127 VAVRNVRRDANDSLKKLEKEKAITEDEQKKAEAEVQKLTDKFVADADKRSQAKEKEIMDI 186 >gi|71083606|ref|YP_266325.1| ribosome recycling factor [Candidatus Pelagibacter ubique HTCC1062] gi|71062719|gb|AAZ21722.1| Ribosome recycling factor [Candidatus Pelagibacter ubique HTCC1062] Length = 183 Score = 150 bits (380), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 80/172 (46%), Positives = 110/172 (63%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M TI +K++ +LRTGR + SMLDLVKV+ YG +PLNQV+++T + R + + VWD Sbjct: 10 KMDKTIEVFQKELTSLRTGRANSSMLDLVKVDVYGQAMPLNQVSSITTPDARTINIQVWD 69 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 V V+ I +S LGLNP ++GQ++R+PVP+ EERR + K+ + EK KIS+RNI Sbjct: 70 LNNVPLVDTAIKKSELGLNPQIDGQLIRLPVPDLNEERRTEIKKLIKSMGEKCKISIRNI 129 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RR+ D LK K SED E +Q TD IK ID+ E K+KEIM Sbjct: 130 RREANDDLKNLVKEKIISEDEEKINEKLVQSFTDEHIKIIDTKVEVKEKEIM 181 >gi|227500094|ref|ZP_03930165.1| ribosome recycling factor [Anaerococcus tetradius ATCC 35098] gi|227217809|gb|EEI83106.1| ribosome recycling factor [Anaerococcus tetradius ATCC 35098] Length = 186 Score = 150 bits (379), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 70/173 (40%), Positives = 110/173 (63%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 D M + +K + T++ GR + ++LD + YG+ P+NQ A V++ E R+LV+ W Sbjct: 12 DEMNKAVESFEKRISTIKAGRATEAILDGITFSYYGTETPINQAATVSIPEARLLVIKPW 71 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 DK + +E+ I +SN+G+ P +G+++R+P P+ TEERR K YAE SKI +RN Sbjct: 72 DKSNIGPIEKAILKSNVGITPQNDGEIIRLPFPQLTEERRKQYTKEVDTYAEDSKIIIRN 131 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RR+ M+ +KKS KSG +ED +LE++IQKITD I+ ++ +K KE+M Sbjct: 132 KRREAMEEVKKSEKSGDITEDDRYTLEDEIQKITDKRIEELEKIAAKKNKELM 184 >gi|134299822|ref|YP_001113318.1| ribosome recycling factor [Desulfotomaculum reducens MI-1] gi|172044307|sp|A4J5Z0|RRF_DESRM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|134052522|gb|ABO50493.1| ribosome recycling factor [Desulfotomaculum reducens MI-1] Length = 184 Score = 150 bits (379), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 72/180 (40%), Positives = 118/180 (65%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + + +D M ++ ++++ +LR GR +PS+LD V V YG+ PLNQ+AN++V E R+L Sbjct: 6 ISSAEDHMKKSVDVVRREFASLRAGRATPSILDKVTVSYYGTPTPLNQLANISVPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK ++ VE+ I +S++G+ P +G V+R+ +P+ T+ERR LVKV AE+ + Sbjct: 66 VIQPWDKSVIPEVEKAILKSDVGITPSSDGTVIRLIIPQLTQERRTELVKVIKKKAEEGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD D +K +K G ED ++++QK+TD +K ID + K++EIM Sbjct: 126 VAVRNIRRDTNDSIKAKQKDG-IPEDEAKRGQDELQKLTDKYVKEIDEMVKAKEQEIMQV 184 >gi|77408576|ref|ZP_00785312.1| ribosome recycling factor [Streptococcus agalactiae COH1] gi|77172850|gb|EAO75983.1| ribosome recycling factor [Streptococcus agalactiae COH1] Length = 185 Score = 150 bits (379), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 74/175 (42%), Positives = 113/175 (64%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 ++R + L ++ +R GR + S+LD ++VE YG+ PLNQ+A++TV E R+L++S Sbjct: 10 QERFEQSHQSLSREFAGIRAGRANASLLDRIQVEYYGAPTPLNQLASITVPEARVLLISP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +DK + +ER I+ES+LG+NP +G V+R+ +P TEE R L K E +KI++R Sbjct: 70 FDKSSIKDIERAINESDLGINPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKIAIR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 NIRRD MD K K+ + +ED + SLE DIQK TD +K+ID K+KE++ Sbjct: 130 NIRRDAMDEAXKQEKNKEITEDDLKSLEKDIQKATDDAVKHIDEMTVNKEKELLE 184 >gi|94310380|ref|YP_583590.1| ribosome recycling factor [Cupriavidus metallidurans CH34] gi|166231214|sp|Q1LNF5|RRF_RALME RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|93354232|gb|ABF08321.1| ribosome recycling factor [Cupriavidus metallidurans CH34] Length = 186 Score = 150 bits (379), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 75/177 (42%), Positives = 113/177 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++++ +M +I K D+ +RTGR +LD V+V+ YGS VP++QVA V++ + R + Sbjct: 8 KSVEQKMQKSIEAFKADLAKVRTGRAHTGLLDHVQVDYYGSMVPISQVAAVSLADARTIS 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K+MV +VE+ I + +LGLNP G V+R+P+P TEERR L KV AE +K+ Sbjct: 68 VQPWEKKMVQAVEKAIRDGDLGLNPATMGDVIRVPMPPLTEERRRELTKVVKGEAEGAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +VRN+RRD + KK K SED ++++QK+TD + ID EK+KEIM Sbjct: 128 AVRNLRRDANEQFKKLVKDKAISEDDERRGQDEVQKLTDKFVAEIDKLVAEKEKEIM 184 >gi|86146887|ref|ZP_01065206.1| ribosome recycling factor [Vibrio sp. MED222] gi|85835339|gb|EAQ53478.1| ribosome recycling factor [Vibrio sp. MED222] Length = 185 Score = 150 bits (379), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 75/179 (41%), Positives = 112/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK + +RTGR PS+L + VE YG+ PL QVANV + R L Sbjct: 7 KDAQERMVKSVDALKNSLQKIRTGRAHPSLLSGLTVEYYGAPTPLTQVANVIAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DK + VE+ I S+LGLNP+ G V+R+P+P TEERR LVK+ AE ++ Sbjct: 67 ITVFDKTLTPLVEKAIMTSDLGLNPMSAGTVIRVPLPPLTEERRKDLVKIVRGEAEGGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD LK K + SED +++IQK+TD+ +KN+D K+KE+M Sbjct: 127 AIRNIRRDANGDLKALLKDKEISEDEDRKAQDEIQKLTDAAVKNVDEVLAVKEKELMEV 185 >gi|299067462|emb|CBJ38661.1| Ribosome recycling factor (Ribosome-releasing factor) [Ralstonia solanacearum CMR15] Length = 186 Score = 150 bits (379), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 74/172 (43%), Positives = 111/172 (64%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M +I K D+ +RTGR +LD V+V+ YGS VP++QVANV + + R + V W+ Sbjct: 13 KMQKSIDAFKADLAKVRTGRAHAGLLDHVQVDYYGSMVPISQVANVGLSDARTISVQPWE 72 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K+MV++VE+ I +++LGLNP G+V+R+P+P TEERR L KV + E +K++VRN+ Sbjct: 73 KKMVSAVEKAIRDADLGLNPATMGEVIRVPMPPLTEERRKELTKVVKSEGEDAKVAVRNV 132 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD + KK K SED ++++QK+TD + +D EK KEIM Sbjct: 133 RRDANEQFKKLVKDKAISEDDERRGQDEVQKLTDRFVAEVDKLVAEKDKEIM 184 >gi|254427174|ref|ZP_05040881.1| ribosome recycling factor [Alcanivorax sp. DG881] gi|196193343|gb|EDX88302.1| ribosome recycling factor [Alcanivorax sp. DG881] Length = 185 Score = 150 bits (379), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 77/180 (42%), Positives = 115/180 (63%), Gaps = 1/180 (0%) Query: 6 DLQN-IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D++N + RM ++ L M +RTGR PS+LD + +E YG+ PLNQ+ N++V E R Sbjct: 4 DIRNDAQSRMKKSLEALDTAMKRVRTGRAHPSLLDNITIEYYGAETPLNQMGNISVEEGR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 L +S +DK ++ +ER I S+LGLNP G ++R+P+P TEE R LVKV A AEK Sbjct: 64 TLTISPFDKSLIPQIERAIMMSDLGLNPSTSGTLIRLPLPPLTEETRRDLVKVVRAEAEK 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++SVRN+RRD LK+ K + SED E IQ++TD + ++S +EK++E+M Sbjct: 124 ARVSVRNVRRDANGDLKELLKEKEISEDEQRRGEEQIQQLTDKMVAQVESVLKEKEEELM 183 >gi|160940991|ref|ZP_02088330.1| hypothetical protein CLOBOL_05885 [Clostridium bolteae ATCC BAA-613] gi|158436081|gb|EDP13848.1| hypothetical protein CLOBOL_05885 [Clostridium bolteae ATCC BAA-613] Length = 183 Score = 150 bits (379), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 73/179 (40%), Positives = 112/179 (62%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 +L+ +D+M T+ L D T+R GR +P +LD +KV+ YG+ PL QV NV+V E RM Sbjct: 3 ELKVYEDKMNKTLDVLLSDYGTIRAGRANPHVLDKIKVDYYGTPTPLQQVGNVSVPEARM 62 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 +V+ W+K ++ +E+ I S LG+NP +G +R+ PE TEERR + K + + Sbjct: 63 IVIQPWEKSLLKPIEKAILTSELGINPTNDGNCIRLVFPEMTEERRKEVSKDVKKKGDNA 122 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 K+++RNIRRD + KK+ K+G SED + + +QK+TD ++ +D EEK KEIM Sbjct: 123 KVALRNIRRDANEAFKKAEKAGDISEDDLTEMTEKMQKLTDKMVEKVDKAVEEKTKEIM 181 >gi|125718424|ref|YP_001035557.1| ribosome recycling factor [Streptococcus sanguinis SK36] gi|323351162|ref|ZP_08086818.1| ribosome recycling factor [Streptococcus sanguinis VMC66] gi|166231520|sp|A3CPA2|RRF_STRSV RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|125498341|gb|ABN45007.1| Ribosome recycling factor, putative [Streptococcus sanguinis SK36] gi|322122386|gb|EFX94097.1| ribosome recycling factor [Streptococcus sanguinis VMC66] gi|324991441|gb|EGC23374.1| ribosome recycling factor [Streptococcus sanguinis SK353] gi|324993795|gb|EGC25714.1| ribosome recycling factor [Streptococcus sanguinis SK405] gi|324994886|gb|EGC26799.1| ribosome recycling factor [Streptococcus sanguinis SK678] gi|325687319|gb|EGD29341.1| ribosome recycling factor [Streptococcus sanguinis SK72] gi|325690743|gb|EGD32744.1| ribosome recycling factor [Streptococcus sanguinis SK115] gi|325694795|gb|EGD36700.1| ribosome recycling factor [Streptococcus sanguinis SK150] gi|325696189|gb|EGD38080.1| ribosome recycling factor [Streptococcus sanguinis SK160] gi|327460953|gb|EGF07286.1| ribosome recycling factor [Streptococcus sanguinis SK1057] gi|327463069|gb|EGF09390.1| ribosome recycling factor [Streptococcus sanguinis SK1] gi|327474670|gb|EGF20075.1| ribosome recycling factor [Streptococcus sanguinis SK408] gi|327490228|gb|EGF22016.1| ribosome recycling factor [Streptococcus sanguinis SK1058] gi|332358733|gb|EGJ36556.1| ribosome recycling factor [Streptococcus sanguinis SK355] gi|332359004|gb|EGJ36825.1| ribosome recycling factor [Streptococcus sanguinis SK49] gi|332367318|gb|EGJ45053.1| ribosome recycling factor [Streptococcus sanguinis SK1059] Length = 185 Score = 150 bits (379), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 71/178 (39%), Positives = 115/178 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+RM + L ++ ++R GR + S+LD + VE YG PLNQ+A++T+ E R+L Sbjct: 6 VEKAKERMTHSHQSLAREFGSIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + +ER ++ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LVTPFDKSSIKDIERALNASDLGITPASDGSVIRLVIPALTEETRRDLAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++RNIRRD MD KK K+ + +ED + +LE DIQK+TD +K+ID K+KE++ Sbjct: 126 VAIRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDEMTANKEKELL 183 >gi|282855676|ref|ZP_06264985.1| ribosome recycling factor [Pyramidobacter piscolens W5455] gi|282586476|gb|EFB91735.1| ribosome recycling factor [Pyramidobacter piscolens W5455] Length = 182 Score = 150 bits (379), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 75/176 (42%), Positives = 115/176 (65%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 N+ ++M + L + +RTGR P +++ VKV+ YGS P+ Q+AN+TV E RML++ Sbjct: 5 NLDEKMAKVLEHLDSEFQGIRTGRAHPGLVEGVKVDYYGSLTPIKQLANITVPEARMLII 64 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 + +DK V +E+ I +N+GL P V+G +R+ VPE T ERR VK+A AE++KI+ Sbjct: 65 APFDKGAVKLIEKAILAANIGLTPNVDGSNIRLVVPELTGERRKEFVKMASKAAEEAKIA 124 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +RNIRRD D KK K+ + +ED + + +D QKITD I +D F++K+KEI+ Sbjct: 125 LRNIRRDANDAYKKQEKASEITEDDLKKMLDDAQKITDKFIARVDDEFKKKEKEIL 180 >gi|310764947|gb|ADP09897.1| ribosome recycling factor [Erwinia sp. Ejp617] Length = 185 Score = 150 bits (379), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 77/174 (44%), Positives = 111/174 (63%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM + K + +RTGR SPS+LD + V+ YGS PL Q+A+VTV + R L ++V+D Sbjct: 12 RMEKCVEAFKNHISKIRTGRASPSILDGIMVDYYGSATPLRQLASVTVEDSRTLKINVFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + + A+VE+ I S+LGLNP G +R+P+P TEERR L+KV AE+ ++SVRN+ Sbjct: 72 RSIGAAVEKAIMTSDLGLNPSSAGSDIRVPLPALTEERRKDLIKVVRGEAEQGRVSVRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD D LK K + SED + D+QK+TD IK +D+ +K+ E+M F Sbjct: 132 RRDANDKLKALLKDKEISEDDDRRAQEDVQKMTDIFIKKVDASLADKETELMDF 185 >gi|327470583|gb|EGF16039.1| ribosome recycling factor [Streptococcus sanguinis SK330] Length = 185 Score = 150 bits (379), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 71/178 (39%), Positives = 115/178 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+RM + L ++ ++R GR + S+LD + VE YG PLNQ+A++T+ E R+L Sbjct: 6 VEKAKERMTHSHQSLAREFGSIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + +ER ++ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LVTPFDKSSIKDIERALNASDLGITPASDGSVIRLVIPALTEETRRDLAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++RNIRRD MD KK K+ + +ED + +LE DIQK+TD +K+ID K+KE++ Sbjct: 126 VAIRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDEMTANKEKELL 183 >gi|167032162|ref|YP_001667393.1| ribosome recycling factor [Pseudomonas putida GB-1] gi|189044066|sp|B0KSA2|RRF_PSEPG RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166858650|gb|ABY97057.1| ribosome recycling factor [Pseudomonas putida GB-1] Length = 185 Score = 150 bits (379), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 74/177 (41%), Positives = 114/177 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ L +++ +RTGR PS+LD VKV A+GS +PLNQVA +TV + R L Sbjct: 7 KDAQERMTKSLEALGRNLAAIRTGRAHPSILDTVKVTAWGSEMPLNQVAAITVEDARTLK 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + DK + A++E+ I S+LGLNP G +R+P+P TEE R K A AE +K+ Sbjct: 67 IVAHDKNLSAAIEKAILTSDLGLNPSSAGTTIRVPMPALTEETRKGYTKQASGVAEDAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +VRN+RRD + LKK K + SED ++IQK+TD + +D+ F+ K+K++M Sbjct: 127 AVRNVRRDALADLKKLTKDKEISEDEERRAADEIQKLTDKFVAEVDAAFKAKEKDLM 183 >gi|58585062|ref|YP_198635.1| ribosome recycling factor [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|75497580|sp|Q5GRI1|RRF_WOLTR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|58419378|gb|AAW71393.1| Ribosome recycling factor [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 185 Score = 150 bits (379), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 74/176 (42%), Positives = 115/176 (65%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K+RM TI D+ +RTGR S S+LD + V YG H LNQVA V+V + + L++ V Sbjct: 10 KERMLKTIQSFYNDIKGIRTGRASASLLDGIVVNIYGGHQKLNQVAGVSVTDNKTLLIKV 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 WD ++ V+ I +NL LNP+VEG +RI +P+ T+E R LVK+ H +AE +++++R Sbjct: 70 WDIGVIGEVKNAILNANLNLNPVVEGNTIRIVLPDLTQETRERLVKLLHQFAENARVAIR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 NIRRD M+ +++ +++ K SED + + +IQ ITD IK ID K+K+I+++ Sbjct: 130 NIRRDIMEEIERMQENKKISEDDFHNAKKEIQNITDDNIKKIDGELSIKEKDILNY 185 >gi|294340704|emb|CAZ89096.1| Ribosome recycling factor (Ribosome-releasing factor) (RRF) [Thiomonas sp. 3As] Length = 186 Score = 150 bits (379), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 76/177 (42%), Positives = 115/177 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N +++M +I LK D+ +RTGR +LD V V+ YG+ + +NQVAN+ +++ R + Sbjct: 8 KNTEEKMHKSIESLKLDLAKVRTGRAHTGLLDHVMVDYYGTMMAINQVANMNLVDARTIS 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K+MV +VE+ I ES+LGLNP +G ++R+P+P TEERR LVKV E +K+ Sbjct: 68 VQPWEKKMVQAVEKAIRESDLGLNPQTQGDIIRVPMPALTEERRRDLVKVIKQEGEGAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +VRN+RRD LK K+ + SED ++++QKITD I ID +K+ EIM Sbjct: 128 AVRNLRRDANQSLKDLVKAKEVSEDDERRAQDEVQKITDRCIAEIDKQLAQKEAEIM 184 >gi|227503382|ref|ZP_03933431.1| ribosome recycling factor [Corynebacterium accolens ATCC 49725] gi|306836376|ref|ZP_07469354.1| ribosome recycling factor [Corynebacterium accolens ATCC 49726] gi|227075885|gb|EEI13848.1| ribosome recycling factor [Corynebacterium accolens ATCC 49725] gi|304567736|gb|EFM43323.1| ribosome recycling factor [Corynebacterium accolens ATCC 49726] Length = 185 Score = 150 bits (379), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 68/175 (38%), Positives = 115/175 (65%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 ++ M ++ ++ ++T+RTGR +P+M + + E YG+ P+ Q+A ++V EPRML++ Sbjct: 10 EEHMTASVEHTREQLVTIRTGRANPAMFNGLIAEYYGAPTPITQMATISVPEPRMLLIKP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +++ M+ +E I S+LG+NP +G VLR+ VP+ TEERR +VK+A + E KI++R Sbjct: 70 YEQSMIQEIENSIRNSDLGVNPTNDGHVLRVTVPQLTEERRKEMVKLAKSKGEDGKIAIR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 NIRR M+ LKK +K G+ ED V + E +++KIT ++ +D E K+ E+M Sbjct: 130 NIRRKAMEQLKKLQKDGEEGEDEVLAAEKEMEKITAGYVEQVDKLVENKESELME 184 >gi|238916787|ref|YP_002930304.1| ribosome recycling factor [Eubacterium eligens ATCC 27750] gi|238872147|gb|ACR71857.1| ribosome recycling factor [Eubacterium eligens ATCC 27750] Length = 187 Score = 150 bits (378), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 75/181 (41%), Positives = 118/181 (65%), Gaps = 3/181 (1%) Query: 7 LQNIKD---RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 ++NIKD RM ++ LK++ +T+R GR +P +LD ++V+ YG+ P+ QVANV+V E Sbjct: 5 MENIKDIEGRMQKSVDNLKEEYVTIRAGRANPHILDRLRVDYYGTPTPIQQVANVSVPEA 64 Query: 64 RMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAE 123 RM+ + W+ ++ +E+ I S+LGL P +G+ +R+ PE TE+RR L K + Sbjct: 65 RMIQIQPWEASLIKDIEKAILVSDLGLTPNNDGKTIRLVFPELTEDRRKELAKDIKKKGD 124 Query: 124 KSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +K+++RNIRRD D +KK K+G S+D + E++IQKITD I IDS ++K KEI Sbjct: 125 NAKVAIRNIRRDANDAIKKENKAGDISDDEAKNSEDEIQKITDKYIAMIDSAIDDKTKEI 184 Query: 184 M 184 + Sbjct: 185 L 185 >gi|239617981|ref|YP_002941303.1| ribosome recycling factor [Kosmotoga olearia TBF 19.5.1] gi|259494547|sp|C5CF34|RRF_KOSOT RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|239506812|gb|ACR80299.1| ribosome recycling factor [Kosmotoga olearia TBF 19.5.1] Length = 185 Score = 150 bits (378), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 74/180 (41%), Positives = 118/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ ++RM + + ++ +RTGR SP++L+ +KV+ YG P+NQ+A + V E R L Sbjct: 6 LKDAEERMKKSTEKISEEFSHMRTGRPSPAILEEIKVDYYGVPTPINQLATINVSEDRSL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ W+K M++ +E+ I SNLGL PI +G V+R+ P T E+R VK++ AEK K Sbjct: 66 IIRPWEKNMLSHIEKAILASNLGLTPINDGNVVRLNFPIPTTEQREKWVKLSKEIAEKGK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I+VRNIRRD + K+ K+ + +ED + E ++QK+TD ++ +D FE+KKKEIM F Sbjct: 126 IAVRNIRRDVLKEAKEMEKNKEMTEDDLRRFEEELQKLTDKYVEEMDKLFEKKKKEIMEF 185 >gi|146297354|ref|YP_001181125.1| ribosome recycling factor [Caldicellulosiruptor saccharolyticus DSM 8903] gi|226703256|sp|A4XLZ9|RRF_CALS8 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|145410930|gb|ABP67934.1| ribosome recycling factor [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 184 Score = 150 bits (378), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 72/179 (40%), Positives = 116/179 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q +++M I LK++ T+R GR +P +LD V V+ YG P+ Q+A++TV E RM+ Sbjct: 5 IQIAEEKMKKAIETLKEEFATVRAGRANPHILDKVMVDYYGVPTPIPQLASITVPEARMI 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ W+ M+ +E+ I +++LG+NP +G+V+R+ PE TEERR LVK AE +K Sbjct: 65 VIQPWEARMLKEIEKAIQKADLGVNPANDGKVIRLIFPELTEERRKELVKQVKKMAEDAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +++RNIRR+ +D KK +K+ + +ED + E D+QK+ D I+ I+ K+KEIM Sbjct: 125 VAIRNIRREAIDEYKKMKKNNEITEDDLKDAEEDVQKLHDKYIEQIEKLLSAKEKEIME 183 >gi|259501578|ref|ZP_05744480.1| ribosome recycling factor [Lactobacillus iners DSM 13335] gi|302191448|ref|ZP_07267702.1| ribosome recycling factor [Lactobacillus iners AB-1] gi|309804225|ref|ZP_07698302.1| ribosome recycling factor [Lactobacillus iners LactinV 11V1-d] gi|309805502|ref|ZP_07699547.1| ribosome recycling factor [Lactobacillus iners LactinV 09V1-c] gi|309807192|ref|ZP_07701166.1| ribosome recycling factor [Lactobacillus iners LactinV 03V1-b] gi|309808808|ref|ZP_07702693.1| ribosome recycling factor [Lactobacillus iners LactinV 01V1-a] gi|309809446|ref|ZP_07703304.1| ribosome recycling factor [Lactobacillus iners SPIN 2503V10-D] gi|312875782|ref|ZP_07735774.1| ribosome recycling factor [Lactobacillus iners LEAF 2053A-b] gi|315653424|ref|ZP_07906346.1| ribosome recycling factor [Lactobacillus iners ATCC 55195] gi|325911800|ref|ZP_08174204.1| ribosome recycling factor [Lactobacillus iners UPII 143-D] gi|325913480|ref|ZP_08175846.1| ribosome recycling factor [Lactobacillus iners UPII 60-B] gi|329919873|ref|ZP_08276811.1| ribosome recycling factor [Lactobacillus iners SPIN 1401G] gi|259167096|gb|EEW51591.1| ribosome recycling factor [Lactobacillus iners DSM 13335] gi|308163628|gb|EFO65898.1| ribosome recycling factor [Lactobacillus iners LactinV 11V1-d] gi|308165153|gb|EFO67391.1| ribosome recycling factor [Lactobacillus iners LactinV 09V1-c] gi|308166413|gb|EFO68618.1| ribosome recycling factor [Lactobacillus iners LactinV 03V1-b] gi|308167934|gb|EFO70067.1| ribosome recycling factor [Lactobacillus iners LactinV 01V1-a] gi|308170118|gb|EFO72153.1| ribosome recycling factor [Lactobacillus iners SPIN 2503V10-D] gi|311088686|gb|EFQ47138.1| ribosome recycling factor [Lactobacillus iners LEAF 2053A-b] gi|315489349|gb|EFU78989.1| ribosome recycling factor [Lactobacillus iners ATCC 55195] gi|325476306|gb|EGC79468.1| ribosome recycling factor [Lactobacillus iners UPII 143-D] gi|325477249|gb|EGC80395.1| ribosome recycling factor [Lactobacillus iners UPII 60-B] gi|328936963|gb|EGG33393.1| ribosome recycling factor [Lactobacillus iners SPIN 1401G] Length = 185 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 75/183 (40%), Positives = 123/183 (67%), Gaps = 1/183 (0%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ VI ++ K M +IS +K++ +R G + S+LD +KVE YG PL Q++++T+ Sbjct: 1 MSNVI-IEKAKANMSKSISVFEKELGGIRAGVANASLLDGIKVEYYGVPTPLTQMSSITI 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R+L+++ +DK + ++E I S+LG+ P +G V+RI +P+ T ERR+ + K Sbjct: 60 PEARVLMITPFDKTTLNNIEHAILASDLGITPANDGSVVRIVIPQLTGERRIEIAKKVGK 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE++KI++RNIRR+GMD LKK +K G+ +ED + E D+QKITD+ K++D+ ++K Sbjct: 120 LAEQAKIAIRNIRREGMDALKKQQKDGEITEDDLHKFEKDMQKITDNATKDVDALADKKS 179 Query: 181 KEI 183 KEI Sbjct: 180 KEI 182 >gi|227504802|ref|ZP_03934851.1| ribosome recycling factor [Corynebacterium striatum ATCC 6940] gi|227198652|gb|EEI78700.1| ribosome recycling factor [Corynebacterium striatum ATCC 6940] Length = 185 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 69/174 (39%), Positives = 111/174 (63%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 ++ M ++ ++ ++T+RTGR +P+M + + E YG+ P+ Q+A ++V EPRM+++ Sbjct: 10 EEHMTASVEHTREQLITIRTGRANPAMFNGLVAEYYGAPTPITQMATISVPEPRMMLIKP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +++ M+ +E I S+LG+NP +GQVLR+ +P+ TEERR LVK A E KI++R Sbjct: 70 YEQSMIHEIENAIRNSDLGVNPTNDGQVLRVTIPQLTEERRRDLVKQAKGKGEDGKIAIR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 NIRR MD LKK +K G A ED V + E +++K T I +D K+ E+M Sbjct: 130 NIRRKAMDQLKKLQKDGDAGEDEVVAAEKEMEKTTAGYIDQVDKLVANKENELM 183 >gi|218710315|ref|YP_002417936.1| ribosome recycling factor [Vibrio splendidus LGP32] gi|218323334|emb|CAV19511.1| Ribosome recycling factor [Vibrio splendidus LGP32] Length = 195 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 75/179 (41%), Positives = 112/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK + +RTGR PS+L + VE YG+ PL QVANV + R L Sbjct: 17 KDAQERMVKSVDALKNSLQKIRTGRAHPSLLSGLTVEYYGAPTPLTQVANVIAEDARTLA 76 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DK + VE+ I S+LGLNP+ G V+R+P+P TEERR LVK+ AE ++ Sbjct: 77 ITVFDKTLTPLVEKAIMTSDLGLNPMSAGTVIRVPLPPLTEERRKDLVKIVRGEAEGGRV 136 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD LK K + SED +++IQK+TD+ +KN+D K+KE+M Sbjct: 137 AIRNIRRDANGDLKALLKDKEISEDEDRKAQDEIQKLTDAAVKNVDEVLAVKEKELMEV 195 >gi|308185743|ref|YP_003929874.1| Ribosome recycling factor [Pantoea vagans C9-1] gi|308056253|gb|ADO08425.1| Ribosome recycling factor [Pantoea vagans C9-1] Length = 219 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 77/187 (41%), Positives = 119/187 (63%), Gaps = 1/187 (0%) Query: 1 MNQVIDLQNIKD-RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVT 59 N + D++ D RM + K + +RTGR SPS+LD + VE YG+ PL Q+A+VT Sbjct: 33 FNVINDIKKDADTRMEKCVEAFKTTISKVRTGRASPSLLDGIVVEYYGTPTPLRQLASVT 92 Query: 60 VLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 V + R L ++V+D+ + +VE+ I +S+LGLNP G +R+P+P TEERR L+K+ Sbjct: 93 VEDSRTLKINVFDRSLSQAVEKAIMKSDLGLNPSSAGTDIRVPLPALTEERRKDLIKIVR 152 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 AE+ ++SVRN+RRD D +K K + SED ++++QK+TD+ IK +D+ EK Sbjct: 153 GEAEQGRVSVRNVRRDANDKIKALLKDKEISEDDERRAQDEVQKMTDAYIKKVDAALSEK 212 Query: 180 KKEIMHF 186 + E+M F Sbjct: 213 ETELMDF 219 >gi|283798096|ref|ZP_06347249.1| ribosome recycling factor [Clostridium sp. M62/1] gi|291074241|gb|EFE11605.1| ribosome recycling factor [Clostridium sp. M62/1] gi|295091732|emb|CBK77839.1| ribosome recycling factor [Clostridium cf. saccharolyticum K10] Length = 184 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 75/175 (42%), Positives = 110/175 (62%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 +++M + L + ++R GR +P +LD ++V+ YG+ PL QVAN++V EPRM+ + Sbjct: 8 FEEKMDKSYDALLNEFSSIRAGRANPHVLDKLRVDYYGAPTPLQQVANISVPEPRMIQIQ 67 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 W+K +V ++E+ I S+LG+NP +G V+R+ PE TEERR L K E +K++V Sbjct: 68 PWEKSLVKAIEKAILTSDLGINPTNDGSVIRLIFPELTEERRKELAKDVKKKGEGAKVAV 127 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RNIRRD D KK K+ + SED ++ E IQK+TD I ID E K KEIM Sbjct: 128 RNIRRDANDTFKKMEKANEISEDDLSDAEEKIQKMTDKMIDKIDKAVETKTKEIM 182 >gi|283835234|ref|ZP_06354975.1| ribosome recycling factor [Citrobacter youngae ATCC 29220] gi|291068945|gb|EFE07054.1| ribosome recycling factor [Citrobacter youngae ATCC 29220] Length = 185 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 74/174 (42%), Positives = 111/174 (63%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM + K + +RTGR SPS+LD + VE YG+ PL Q+A+VTV + R L ++V+D Sbjct: 12 RMDKCVEAFKNQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + M +VE+ I S+LGLNP G +R+P+P TEERR L K+ AE ++++VRN+ Sbjct: 72 RSMGPAVEKAIMASDLGLNPSSAGSDIRVPLPPLTEERRKDLTKIVRGEAEGARVAVRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD D +K K + SED ++++QK+TD+ IK +D+ EK+ E+M F Sbjct: 132 RRDANDKVKALLKDKEISEDDDRRSQDEVQKLTDAAIKKVDAALAEKETELMQF 185 >gi|153853432|ref|ZP_01994841.1| hypothetical protein DORLON_00830 [Dorea longicatena DSM 13814] gi|149754218|gb|EDM64149.1| hypothetical protein DORLON_00830 [Dorea longicatena DSM 13814] Length = 183 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 74/178 (41%), Positives = 117/178 (65%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ +++M TI L ++ +R GR +P++L+ + V+ YG+ P+ QVANV+V E RM+ Sbjct: 5 LKPFEEKMKKTIGNLDGELSAIRAGRANPNVLNKIMVDYYGTPTPIQQVANVSVPEARMI 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + W+K+MV +E+ I S+LG+NP +G +R+ PE TE+RR LVK E +K Sbjct: 65 QIQPWEKKMVREIEKAIMTSDLGINPTNDGTTVRLLFPELTEDRRKELVKDVKKKGEAAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++RNIRRDG+D +KK + S SED + +E+D+QK+TD +K +D E K KE+M Sbjct: 125 VAIRNIRRDGIDSVKKLKGSD-VSEDEMKDMEDDLQKLTDKYVKEVDKAVEAKSKEVM 181 >gi|317505061|ref|ZP_07963008.1| ribosome recycling factor [Prevotella salivae DSM 15606] gi|315663839|gb|EFV03559.1| ribosome recycling factor [Prevotella salivae DSM 15606] Length = 186 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 75/178 (42%), Positives = 115/178 (64%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + ++RM +L ++ +R GR + ++LD VKV++YGS VPLNQVAN++ + R + Sbjct: 8 LSDAQERMEMAAMYLADELTHIRAGRANTAILDGVKVDSYGSKVPLNQVANISTPDARTI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK+ + +E+ I +S +G+ P G+V+R+ +P+ TEERR LVK + E++K Sbjct: 68 AIRPWDKKAIKDIEKAIMDSGVGITPENNGEVIRLGIPQPTEERRKELVKQCNKIGERTK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 + VRN+R + D LKK+ K G SED+ END+QK+ D IK ID EK+KEIM Sbjct: 128 VEVRNVRGEVKDKLKKAIKEG-LSEDLEKDAENDLQKVHDKFIKRIDDLLNEKQKEIM 184 >gi|306829302|ref|ZP_07462492.1| ribosome recycling factor [Streptococcus mitis ATCC 6249] gi|315612956|ref|ZP_07887867.1| ribosome recycling factor [Streptococcus sanguinis ATCC 49296] gi|322374516|ref|ZP_08049030.1| ribosome recycling factor [Streptococcus sp. C300] gi|331266588|ref|YP_004326218.1| ribosome recycling factor [Streptococcus oralis Uo5] gi|304428388|gb|EFM31478.1| ribosome recycling factor [Streptococcus mitis ATCC 6249] gi|315315066|gb|EFU63107.1| ribosome recycling factor [Streptococcus sanguinis ATCC 49296] gi|321280016|gb|EFX57055.1| ribosome recycling factor [Streptococcus sp. C300] gi|326683260|emb|CBZ00878.1| ribosome recycling factor [Streptococcus oralis Uo5] Length = 185 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 73/179 (40%), Positives = 114/179 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+RM + L ++ +R GR + S+LD + VE YG PLNQ+A++T+ E R+L Sbjct: 6 VEKAKERMTQSHQSLAREFGGIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + +ER ++ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRNIRRD MD KK K+ + +ED + +LE DIQK+TD +K+ID K+KEI+ Sbjct: 126 VAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKEILE 184 >gi|328946695|gb|EGG40833.1| ribosome recycling factor [Streptococcus sanguinis SK1087] Length = 185 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 71/178 (39%), Positives = 115/178 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+RM + L ++ ++R GR + S+LD + VE YG PLNQ+A++T+ E R+L Sbjct: 6 VEKAKERMTHSHQSLAREFGSIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + +ER ++ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LVTPFDKSSIKDIERALNASDLGITPASDGSVIRLVIPALTEETRRDLAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++RNIRRD MD KK K+ + +ED + +LE DIQK+TD +K+ID K+KE++ Sbjct: 126 VAIRNIRRDAMDDAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDEMTANKEKELL 183 >gi|168494373|ref|ZP_02718516.1| ribosome recycling factor [Streptococcus pneumoniae CDC3059-06] gi|183575679|gb|EDT96207.1| ribosome recycling factor [Streptococcus pneumoniae CDC3059-06] Length = 185 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 73/178 (41%), Positives = 114/178 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+RM + L ++ +R GR + S+LD V VE YG PLNQ+A++T+ E R+L Sbjct: 6 IEKAKERMTQSHHSLAREFGAIRAGRANASLLDRVHVEYYGVETPLNQIASITIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + +ER ++ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++VRNIRRD MD KK K+ + +ED + +LE DIQK+TD +K+ID K+KE++ Sbjct: 126 VAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELL 183 >gi|148984686|ref|ZP_01817954.1| ribosome recycling factor [Streptococcus pneumoniae SP3-BS71] gi|148988384|ref|ZP_01819831.1| ribosome recycling factor [Streptococcus pneumoniae SP6-BS73] gi|148998620|ref|ZP_01826060.1| ribosome recycling factor [Streptococcus pneumoniae SP11-BS70] gi|149002494|ref|ZP_01827428.1| ribosome recycling factor [Streptococcus pneumoniae SP14-BS69] gi|149006380|ref|ZP_01830092.1| ribosome recycling factor [Streptococcus pneumoniae SP18-BS74] gi|168485896|ref|ZP_02710404.1| ribosome recycling factor [Streptococcus pneumoniae CDC1087-00] gi|168575607|ref|ZP_02721543.1| ribosome recycling factor [Streptococcus pneumoniae MLV-016] gi|169832481|ref|YP_001694393.1| ribosome recycling factor [Streptococcus pneumoniae Hungary19A-6] gi|194397625|ref|YP_002037583.1| ribosome recycling factor [Streptococcus pneumoniae G54] gi|221231712|ref|YP_002510864.1| ribosome recycling factor [Streptococcus pneumoniae ATCC 700669] gi|225854450|ref|YP_002735962.1| ribosome recycling factor [Streptococcus pneumoniae JJA] gi|225861166|ref|YP_002742675.1| ribosome recycling factor [Streptococcus pneumoniae Taiwan19F-14] gi|237650519|ref|ZP_04524771.1| ribosome recycling factor [Streptococcus pneumoniae CCRI 1974] gi|237820813|ref|ZP_04596658.1| ribosome recycling factor [Streptococcus pneumoniae CCRI 1974M2] gi|298230564|ref|ZP_06964245.1| ribosome recycling factor [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254562|ref|ZP_06978148.1| ribosome recycling factor [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503047|ref|YP_003724987.1| ribosome recycling factor [Streptococcus pneumoniae TCH8431/19A] gi|307067602|ref|YP_003876568.1| ribosome recycling factor [Streptococcus pneumoniae AP200] gi|307127503|ref|YP_003879534.1| ribosome recycling factor [Streptococcus pneumoniae 670-6B] gi|226749942|sp|B5E448|RRF_STRP4 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238688288|sp|B1IBA8|RRF_STRPI RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|254809533|sp|B8ZP45|RRF_STRPJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|254809535|sp|C1CDU1|RRF_STRZJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|254809537|sp|C1CRV3|RRF_STRZT RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|147755618|gb|EDK62665.1| ribosome recycling factor [Streptococcus pneumoniae SP11-BS70] gi|147759431|gb|EDK66423.1| ribosome recycling factor [Streptococcus pneumoniae SP14-BS69] gi|147762157|gb|EDK69119.1| ribosome recycling factor [Streptococcus pneumoniae SP18-BS74] gi|147923077|gb|EDK74192.1| ribosome recycling factor [Streptococcus pneumoniae SP3-BS71] gi|147926065|gb|EDK77139.1| ribosome recycling factor [Streptococcus pneumoniae SP6-BS73] gi|168994983|gb|ACA35595.1| ribosome recycling factor [Streptococcus pneumoniae Hungary19A-6] gi|183571057|gb|EDT91585.1| ribosome recycling factor [Streptococcus pneumoniae CDC1087-00] gi|183578469|gb|EDT98997.1| ribosome recycling factor [Streptococcus pneumoniae MLV-016] gi|194357292|gb|ACF55740.1| ribosome recycling factor [Streptococcus pneumoniae G54] gi|220674172|emb|CAR68698.1| ribosome recycling factor [Streptococcus pneumoniae ATCC 700669] gi|225723622|gb|ACO19475.1| ribosome recycling factor [Streptococcus pneumoniae JJA] gi|225727526|gb|ACO23377.1| ribosome recycling factor [Streptococcus pneumoniae Taiwan19F-14] gi|298238642|gb|ADI69773.1| ribosome recycling factor [Streptococcus pneumoniae TCH8431/19A] gi|301799925|emb|CBW32506.1| ribosome recycling factor [Streptococcus pneumoniae OXC141] gi|306409139|gb|ADM84566.1| Ribosome recycling factor [Streptococcus pneumoniae AP200] gi|306484565|gb|ADM91434.1| ribosome recycling factor [Streptococcus pneumoniae 670-6B] gi|327389222|gb|EGE87567.1| ribosome recycling factor [Streptococcus pneumoniae GA04375] gi|332075559|gb|EGI86027.1| ribosome recycling factor [Streptococcus pneumoniae GA17545] gi|332076224|gb|EGI86690.1| ribosome recycling factor [Streptococcus pneumoniae GA41301] gi|332202800|gb|EGJ16869.1| ribosome recycling factor [Streptococcus pneumoniae GA41317] Length = 185 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 76/185 (41%), Positives = 117/185 (63%), Gaps = 1/185 (0%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M VI ++ K+RM + L ++ +R GR + S+LD V VE YG PLNQ+A++T+ Sbjct: 1 MANVI-IEKAKERMTQSHQSLAREFGGIRAGRANASLLDRVHVEYYGVETPLNQIASITI 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R+L+V+ +DK + +ER ++ S+LG+ P +G V+R+ +P TEE R L K Sbjct: 60 PEARVLLVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKK 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E +K++VRNIRRD MD KK K+ + +ED + +LE DIQK+TD +K+ID K+ Sbjct: 120 VGENAKVAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKE 179 Query: 181 KEIMH 185 KE++ Sbjct: 180 KELLE 184 >gi|226322655|ref|ZP_03798173.1| hypothetical protein COPCOM_00427 [Coprococcus comes ATCC 27758] gi|225208992|gb|EEG91346.1| hypothetical protein COPCOM_00427 [Coprococcus comes ATCC 27758] Length = 183 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 75/173 (43%), Positives = 113/173 (65%), Gaps = 1/173 (0%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 ++M TI L ++ ++R GR +P++L+ + VE YG+ P+ QVAN++V E RM+ + W Sbjct: 10 EKMQKTIHALDTELASIRAGRANPNILNKLTVEYYGTPTPIQQVANISVPEARMIQIQPW 69 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 +K+++ +E+ I S++G+NP +G V+R+ PE TEERR LVK E SK++VRN Sbjct: 70 EKKIIKDIEKAILMSDIGINPTNDGTVIRLVFPELTEERRKELVKDVKKKGEASKVAVRN 129 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 IRRDG D KK K SED + LE+ IQK+TD IK +D+ + K KE+M Sbjct: 130 IRRDGNDAFKK-LKGTDVSEDEIQDLEDQIQKLTDKYIKEVDAAVDAKSKEVM 181 >gi|292489224|ref|YP_003532111.1| ribosome recycling factor [Erwinia amylovora CFBP1430] gi|291554658|emb|CBA22349.1| Ribosome recycling factor [Erwinia amylovora CFBP1430] gi|312173385|emb|CBX81639.1| Ribosome recycling factor [Erwinia amylovora ATCC BAA-2158] Length = 195 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 77/174 (44%), Positives = 111/174 (63%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM + K + +RTGR SPS+LD + V+ YGS PL Q+A+VTV + R L ++V+D Sbjct: 22 RMEKCVEAFKNHISKIRTGRASPSILDGIMVDYYGSPTPLRQLASVTVEDSRTLKINVFD 81 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + + A+VE+ I S+LGLNP G +R+P+P TEERR L+KV AE+ ++SVRN+ Sbjct: 82 RSIGAAVEKAIMTSDLGLNPSSAGSDIRVPLPALTEERRKDLIKVVRGEAEQGRVSVRNV 141 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD D LK K + SED + D+QK+TD IK +D+ +K+ E+M F Sbjct: 142 RRDANDKLKALLKDKEISEDDDRRAQEDVQKMTDIFIKKVDASLADKETELMDF 195 >gi|301794085|emb|CBW36491.1| ribosome recycling factor [Streptococcus pneumoniae INV104] gi|332204947|gb|EGJ19012.1| ribosome recycling factor [Streptococcus pneumoniae GA47901] Length = 185 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 73/179 (40%), Positives = 114/179 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+RM + L ++ +R GR + S+LD + VE YG PLNQ+A++T+ E R+L Sbjct: 6 IEKAKERMTQSHQSLAREFGGIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + +ER ++ S+LG+ P +G V+R+ VP TEE R L K E +K Sbjct: 66 LVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVVPALTEETRRDLAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRNIRRD MD KK K+ + +ED + +LE DIQK+TD +K+ID K+KE++ Sbjct: 126 VAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELLE 184 >gi|225858740|ref|YP_002740250.1| ribosome recycling factor [Streptococcus pneumoniae 70585] gi|289167793|ref|YP_003446062.1| ribosome recycling factor [Streptococcus mitis B6] gi|307704917|ref|ZP_07641808.1| ribosome recycling factor [Streptococcus mitis SK597] gi|307706446|ref|ZP_07643255.1| ribosome recycling factor [Streptococcus mitis SK321] gi|307708583|ref|ZP_07645047.1| ribosome recycling factor [Streptococcus mitis NCTC 12261] gi|307709131|ref|ZP_07645590.1| ribosome recycling factor [Streptococcus mitis SK564] gi|322376444|ref|ZP_08050937.1| ribosome recycling factor [Streptococcus sp. M334] gi|254809532|sp|C1C6S4|RRF_STRP7 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|225721445|gb|ACO17299.1| ribosome recycling factor [Streptococcus pneumoniae 70585] gi|288907360|emb|CBJ22197.1| ribosome recycling factor [Streptococcus mitis B6] gi|301801786|emb|CBW34497.1| ribosome recycling factor [Streptococcus pneumoniae INV200] gi|307615332|gb|EFN94541.1| ribosome recycling factor [Streptococcus mitis NCTC 12261] gi|307618156|gb|EFN97314.1| ribosome recycling factor [Streptococcus mitis SK321] gi|307620077|gb|EFN99194.1| ribosome recycling factor [Streptococcus mitis SK564] gi|307621531|gb|EFO00577.1| ribosome recycling factor [Streptococcus mitis SK597] gi|321282251|gb|EFX59258.1| ribosome recycling factor [Streptococcus sp. M334] Length = 185 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 73/179 (40%), Positives = 114/179 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+RM + L ++ +R GR + S+LD V VE YG PLNQ+A++T+ E R+L Sbjct: 6 IEKAKERMTQSHQSLAREFGGIRAGRANASLLDRVHVEYYGVETPLNQIASITIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + +ER ++ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRNIRRD MD KK K+ + +ED + +LE DIQK+TD +K+ID K+KE++ Sbjct: 126 VAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELLE 184 >gi|22297803|ref|NP_681050.1| ribosome recycling factor [Thermosynechococcus elongatus BP-1] gi|34222747|sp|Q8DM64|RRF_THEEB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|22293980|dbj|BAC07812.1| ribosome releasing factor [Thermosynechococcus elongatus BP-1] Length = 182 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 71/178 (39%), Positives = 116/178 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++++RM ++ + D ++RTGR + ++LD V V+ YG+ PL +ANV+ + + Sbjct: 3 LADVEERMQKSVEATQHDFNSIRTGRANAALLDRVMVDYYGTETPLRSLANVSTPDATTI 62 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D+ +AS+E+ I S+LGL P +G +R+ +P T ERR LVK A AE K Sbjct: 63 LIQPYDRSTLASIEKAIQLSDLGLTPNNDGSSVRLNIPPLTTERRKELVKTAAKIAEGGK 122 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++RNIRRD +DH+KK+ K+G+ +ED V L+ +QK+TD I ID+ EK+K+IM Sbjct: 123 VAIRNIRRDAIDHIKKAGKAGELTEDEVKDLQEKVQKLTDKYIGKIDALLAEKEKDIM 180 >gi|289450226|ref|YP_003475249.1| ribosome recycling factor [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184773|gb|ADC91198.1| ribosome recycling factor [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 187 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 70/176 (39%), Positives = 114/176 (64%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 +DRM +I LK+++ ++R GR +P +LD + + YG+ PLNQVAN+ V EPRM+ +S Sbjct: 12 EDRMNKSIDNLKENLNSVRAGRANPHILDRITISYYGAETPLNQVANIQVPEPRMITISP 71 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 WD ++ +E+ + S++G+NP +G+++R+ P TEERR L K Y E++KI VR Sbjct: 72 WDPSSLSLIEKAVLMSDIGINPNNDGKMIRLVFPTLTEERRKDLAKTVAKYGEETKIVVR 131 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 N+RR+ +D K KS + S+D + ++E+D+QKIT+ ID K+K++M Sbjct: 132 NVRREAIDKFKALHKSKELSDDDIRTVEDDVQKITNRFTAKIDEIVAAKEKDLMEI 187 >gi|146310374|ref|YP_001175448.1| ribosome recycling factor [Enterobacter sp. 638] gi|166991556|sp|A4W6R7|RRF_ENT38 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|145317250|gb|ABP59397.1| ribosome recycling factor [Enterobacter sp. 638] Length = 185 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 74/174 (42%), Positives = 112/174 (64%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM + K + +RTGR SPS+LD + VE YG+ PL Q+A+VTV + R L ++V+D Sbjct: 12 RMEKCVEAFKNQISKVRTGRASPSLLDGIIVEYYGTPTPLRQLASVTVEDTRTLKINVFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + + +VE+ I S+LGLNP G +R+P+P TEERR L+KV AE ++++VRN+ Sbjct: 72 RSLGPAVEKAIMASDLGLNPSSAGTDIRVPLPALTEERRKELIKVVRGEAEGARVAVRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD D +K K + SED ++D+QK+TD+ IK +D+ +K+ E+M F Sbjct: 132 RRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKLDAALADKEAELMQF 185 >gi|292898542|ref|YP_003537911.1| ribosome recycling factor [Erwinia amylovora ATCC 49946] gi|291198390|emb|CBJ45497.1| ribosome recycling factor [Erwinia amylovora ATCC 49946] Length = 185 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 77/174 (44%), Positives = 111/174 (63%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM + K + +RTGR SPS+LD + V+ YGS PL Q+A+VTV + R L ++V+D Sbjct: 12 RMEKCVEAFKNHISKIRTGRASPSILDGIMVDYYGSPTPLRQLASVTVEDSRTLKINVFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + + A+VE+ I S+LGLNP G +R+P+P TEERR L+KV AE+ ++SVRN+ Sbjct: 72 RSIGAAVEKAIMTSDLGLNPSSAGSDIRVPLPALTEERRKDLIKVVRGEAEQGRVSVRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD D LK K + SED + D+QK+TD IK +D+ +K+ E+M F Sbjct: 132 RRDANDKLKALLKDKEISEDDDRRAQEDVQKMTDIFIKKVDASLADKETELMDF 185 >gi|329912033|ref|ZP_08275644.1| Ribosome recycling factor [Oxalobacteraceae bacterium IMCC9480] gi|327545756|gb|EGF30890.1| Ribosome recycling factor [Oxalobacteraceae bacterium IMCC9480] Length = 186 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 78/182 (42%), Positives = 119/182 (65%), Gaps = 1/182 (0%) Query: 4 VIDLQNIKD-RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLE 62 ++D++ D RM +I LK D+ +RTGR MLD + V+ YG+ L QVANVT+++ Sbjct: 3 IVDVKKNTDVRMHKSIETLKTDLAKVRTGRAHVGMLDHIMVDYYGNPTQLTQVANVTLVD 62 Query: 63 PRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 R L V W+K+MV+ VE+ I +++LGLNP +G ++R+P P TEERR +VK+ + A Sbjct: 63 ARTLGVQPWEKKMVSVVEKAIRDADLGLNPSTQGDLIRVPTPALTEERRKEMVKLVKSEA 122 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 E +KI++RNIRRD + LKK K + SED +++IQK+TD + ID +K+KE Sbjct: 123 EDAKIAIRNIRRDANEGLKKLIKDKECSEDDERRAQDEIQKMTDKFVAEIDKLVVDKEKE 182 Query: 183 IM 184 ++ Sbjct: 183 VL 184 >gi|237757010|ref|ZP_04585465.1| ribosome recycling factor [Sulfurihydrogenibium yellowstonense SS-5] gi|237690828|gb|EEP59981.1| ribosome recycling factor [Sulfurihydrogenibium yellowstonense SS-5] Length = 184 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 69/178 (38%), Positives = 121/178 (67%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ + RM ++ K++++ +RTGR S +++ +K++ YG+ +PL Q+A ++ EP + Sbjct: 6 LKEAEKRMKGAVNKYKEELLGIRTGRASTGLVENIKIDYYGAELPLKQLATISTPEPAQI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK V +E+ + E+NLG NP EG V+R+ +P TEERR +VK+ H +AE+++ Sbjct: 66 VIQTWDKSAVKLIEKALMEANLGANPQTEGNVIRLNLPPMTEERRKEVVKMIHKFAEEAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 I++RNIRRD ++++K +K G + +D+ +LE +QK+TD I+ I+ E K+KEI+ Sbjct: 126 IAIRNIRRDEKENIEKLKKEGFSEDDIKKALEK-LQKLTDKYIEEINQLTEAKEKEIL 182 >gi|331701338|ref|YP_004398297.1| ribosome-recycling factor [Lactobacillus buchneri NRRL B-30929] gi|329128681|gb|AEB73234.1| Ribosome-recycling factor [Lactobacillus buchneri NRRL B-30929] Length = 187 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 68/179 (37%), Positives = 120/179 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K++M +T L+ D+ ++R G + S+L V V+ YG+ PLNQ+A++T+ E R++ Sbjct: 8 LTEAKEKMKNTREVLEHDVGSIRAGHANASLLSGVMVDYYGAPTPLNQIASITIPEARVI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK + +E+GI+E++LG++P +G +R+ VP TE+RR + K A EKSK Sbjct: 68 LITPYDKSALEGIEKGIYEADLGISPANDGTAIRLAVPALTEDRRKEIAKQVKATGEKSK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +++RN+RR+ MD LK+S KS ++D + E+ +QK+TD IK +D +K++E+M+ Sbjct: 128 VAIRNVRREAMDTLKRSNKSEDITDDELHRYEDQVQKLTDDAIKGVDGIVADKEQEVMN 186 >gi|168491033|ref|ZP_02715176.1| ribosome recycling factor [Streptococcus pneumoniae CDC0288-04] gi|183574722|gb|EDT95250.1| ribosome recycling factor [Streptococcus pneumoniae CDC0288-04] Length = 185 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 73/179 (40%), Positives = 114/179 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+RM + L ++ +R GR + S+LD V VE YG PLNQ+A++T+ E R+L Sbjct: 6 IEKAKERMTQSHQSLAREFGGIRAGRANASLLDRVHVEYYGVETPLNQIASITIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + +ER ++ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRNIRRD MD KK K+ + +ED + +LE DIQK+TD +K+ID K+KE++ Sbjct: 126 VAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELLE 184 >gi|229513899|ref|ZP_04403361.1| ribosome recycling factor [Vibrio cholerae TMA 21] gi|229349080|gb|EEO14037.1| ribosome recycling factor [Vibrio cholerae TMA 21] Length = 185 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 75/179 (41%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK + +RTGR PS+L + V+ YG+ PLNQVANV + R L Sbjct: 7 KDAQERMEKSVEALKNGLSKIRTGRAHPSLLMGISVDYYGAPTPLNQVANVIAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+E+ VE+ I S+LGLNP+ G ++R+P+P TEERR LVK+ AE ++ Sbjct: 67 ITVFDRELTQKVEKAILMSDLGLNPMSAGTIIRVPLPPLTEERRRDLVKIVRGEAEGGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD + LK K + SED + +IQK+TD+ +K ID K+KE+M Sbjct: 127 AVRNIRRDANNDLKALLKDKEISEDDERRAQEEIQKLTDAAVKKIDDVLAVKEKELMEV 185 >gi|332830277|gb|EGK02905.1| ribosome-recycling factor [Dysgonomonas gadei ATCC BAA-286] Length = 187 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 75/177 (42%), Positives = 114/177 (64%), Gaps = 1/177 (0%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q +++M ++ FL + + +R G+ +P +LD +K+E YGS PL+ VA + + R +V Sbjct: 10 QKAEEKMQASVEFLDETLSRIRAGKANPHILDGIKLEYYGSLTPLSGVAAINTPDARTIV 69 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + W+K+M+ VE+ I S++G+ P G+++R+ +P TEERR LVK A AE +K+ Sbjct: 70 IQPWEKQMLKEVEKAILNSDVGITPDNNGEIIRLSIPPLTEERRKQLVKQAKQEAEDAKV 129 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 S+RN RRD +D +KKS K G A EDM END+QK+ D IK ID F K+KEI+ Sbjct: 130 SIRNARRDAIDSIKKSVKDGVA-EDMAKDAENDMQKLHDKYIKKIDDVFALKEKEIL 185 >gi|323484222|ref|ZP_08089591.1| hypothetical protein HMPREF9474_01342 [Clostridium symbiosum WAL-14163] gi|323692104|ref|ZP_08106351.1| ribosome recycling factor [Clostridium symbiosum WAL-14673] gi|323402464|gb|EGA94793.1| hypothetical protein HMPREF9474_01342 [Clostridium symbiosum WAL-14163] gi|323503904|gb|EGB19719.1| ribosome recycling factor [Clostridium symbiosum WAL-14673] Length = 184 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 76/173 (43%), Positives = 110/173 (63%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 ++M + L + ++R GR +P +LD ++V+ YG+ PL QVANV+V EPRM+++ W Sbjct: 10 EKMVKSYEVLLDEYASIRAGRANPHVLDKLRVDYYGTPTPLQQVANVSVPEPRMILIQPW 69 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 +++++ +E+ I S+LG+NP +G +R+ PE TEERR L K E K++VRN Sbjct: 70 ERKLIKDIEKAILTSDLGINPNNDGNAIRLVFPELTEERRKELAKDVKKKGEGVKVAVRN 129 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 IRRD D +KK K+G+ SED A E IQKITD I+ ID E K KEIM Sbjct: 130 IRRDANDAIKKMEKAGEISEDDQAEGEEKIQKITDKMIEKIDKAVEAKTKEIM 182 >gi|94986827|ref|YP_594760.1| ribosome recycling factor [Lawsonia intracellularis PHE/MN1-00] gi|190360249|sp|Q1MRD7|RRF_LAWIP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|94731076|emb|CAJ54439.1| Ribosome recycling factor [Lawsonia intracellularis PHE/MN1-00] Length = 188 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 72/175 (41%), Positives = 115/175 (65%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 ++RM I+ L+K+ LRTGR S S++D +KV+ YG+ P+NQ+A++ + + + + Sbjct: 13 QERMVKAITSLEKEFTKLRTGRASTSIVDTIKVDYYGTPTPINQLASIAIPDSSSITIQP 72 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 WDK +E+ I +S LGL PI +G+++RI +P TE+RR LVK+A Y E +KI++R Sbjct: 73 WDKTAFNPIEKAILKSELGLTPINDGKIIRITLPPLTEDRRKDLVKLARKYGEDTKIAIR 132 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 NIRRD + LK+ K+ SED + DIQK+TD+ IK +++ + K+KEI+ Sbjct: 133 NIRRDANEQLKRLEKNKFISEDELKGFTEDIQKMTDNYIKEVETHCKTKEKEIIE 187 >gi|269926622|ref|YP_003323245.1| ribosome recycling factor [Thermobaculum terrenum ATCC BAA-798] gi|269790282|gb|ACZ42423.1| ribosome recycling factor [Thermobaculum terrenum ATCC BAA-798] Length = 185 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 71/178 (39%), Positives = 117/178 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + + RM +I LKKD+ +R+GR +P +++ ++VE YG PL Q+A+++V EPRM+ Sbjct: 6 LADAEKRMRHSIDVLKKDLANIRSGRATPGLVEHIEVEYYGVPTPLIQLASISVPEPRMI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WD + +E+ I +S LGLNP +G+++RI VP TEERR +LVK+ E+ + Sbjct: 66 AITPWDPNSIGPIEKAIQKSELGLNPSNDGKIIRILVPPLTEERRRSLVKMVRQRVEEDR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++RNIRRD M+ +K+ + SED + +Q++TD IK DS E+K++EI+ Sbjct: 126 VAIRNIRRDVMNDIKQMQHEKMISEDEARRAQEKLQQLTDKYIKEADSLGEQKEQEIL 183 >gi|220927898|ref|YP_002504807.1| ribosome recycling factor [Clostridium cellulolyticum H10] gi|219998226|gb|ACL74827.1| ribosome recycling factor [Clostridium cellulolyticum H10] Length = 185 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 71/176 (40%), Positives = 117/176 (66%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 I+++M TI+ L+ ++ +R GR +P++LD + ++ YG+ P+ QVA V++ E R++++ Sbjct: 9 IEEKMKKTINVLRDNLAGIRAGRANPAILDKLTIDYYGAPTPIQQVATVSIPEARVILIQ 68 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 W+ +++ +E+ I +S++G+NP +G+VLR+ P TEERR L K A E+SKI++ Sbjct: 69 PWEAKLLKDIEKEIQKSDIGINPNNDGKVLRLVFPALTEERRRELTKQAKKEGEESKIAI 128 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 R+IRRD ++ +K +KSG+ +ED + E DIQ ITD I ID E K KEIM Sbjct: 129 RSIRRDSIETMKAKKKSGEITEDDLKDAEKDIQNITDRYIAEIDRVIEAKDKEIME 184 >gi|88706580|ref|ZP_01104283.1| Ribosome recycling factor [Congregibacter litoralis KT71] gi|88699076|gb|EAQ96192.1| Ribosome recycling factor [Congregibacter litoralis KT71] Length = 185 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 75/182 (41%), Positives = 112/182 (61%), Gaps = 1/182 (0%) Query: 6 DLQNIKD-RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D+Q D RM +++ L + +RTGR PS+LD +KV YG+ PLNQVANV V + R Sbjct: 4 DIQKDADSRMQNSLEALGTNFNKIRTGRAHPSLLDGIKVSYYGADTPLNQVANVNVEDAR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 L ++ WD+ M+ +ER I +S+LGLNP G+V+RIP+P TEE R +K A + AE Sbjct: 64 TLSLTAWDRSMIPDIERAIMKSDLGLNPATAGEVIRIPMPALTEETRKGYIKQARSEAEA 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++S+RN RRD M LK K + SED ++ IQK+TDS + ++ K+ +++ Sbjct: 124 ARVSIRNARRDAMGMLKDMVKDKEISEDDERRGQDQIQKLTDSFVARVEEMLTAKEADLL 183 Query: 185 HF 186 Sbjct: 184 EI 185 >gi|188996515|ref|YP_001930766.1| ribosome recycling factor [Sulfurihydrogenibium sp. YO3AOP1] gi|188931582|gb|ACD66212.1| ribosome recycling factor [Sulfurihydrogenibium sp. YO3AOP1] Length = 184 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 69/178 (38%), Positives = 121/178 (67%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ + RM ++ K++++ +RTGR S +++ +K++ YG+ +PL Q+A ++ EP + Sbjct: 6 LKEAEKRMKGAVNKYKEELLGIRTGRASTGLVENIKIDYYGTELPLKQLATISTPEPAQI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK V +E+ + E+NLG NP EG V+R+ +P TEERR +VK+ H +AE+++ Sbjct: 66 VIQTWDKSAVKLIEKALMEANLGANPQTEGNVIRLNLPPMTEERRKEVVKMIHKFAEEAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 I++RNIRRD ++++K +K G + +D+ +LE +QK+TD I+ I+ E K+KEI+ Sbjct: 126 IAIRNIRRDEKENIEKLKKEGFSEDDIKKALEK-LQKLTDRYIEEINQLTEAKEKEIL 182 >gi|84389789|ref|ZP_00991341.1| ribosome releasing factor [Vibrio splendidus 12B01] gi|84376890|gb|EAP93764.1| ribosome releasing factor [Vibrio splendidus 12B01] Length = 185 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 75/179 (41%), Positives = 111/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK + +RTGR PS+L + VE YG+ PL QVANV + R L Sbjct: 7 KDAQERMDKSVDALKNSLQKIRTGRAHPSLLSGLTVEYYGAPTPLAQVANVIAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DK + VE+ I S+LGLNP+ G V+R+P+P TEERR LVK+ AE ++ Sbjct: 67 ITVFDKTLTPLVEKAILTSDLGLNPMSAGTVIRVPLPALTEERRKDLVKIVRGEAEGGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD LK K + SED +++IQK+TD +KN+D K+KE+M Sbjct: 127 AIRNIRRDANGDLKALLKDKEISEDEDRRAQDEIQKLTDIAVKNVDEVLATKEKELMEV 185 >gi|331084701|ref|ZP_08333789.1| ribosome-recycling factor [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410795|gb|EGG90217.1| ribosome-recycling factor [Lachnospiraceae bacterium 9_1_43BFAA] Length = 183 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 79/184 (42%), Positives = 117/184 (63%), Gaps = 3/184 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 MN+ +++ N ++M + + L ++ T+R GR +P +LD + V+ YGS P+ QVANV+V Sbjct: 1 MNERLNVFN--EKMEKSYNSLTSELATIRAGRANPHVLDKLTVDYYGSPTPIQQVANVSV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E RM+ + W+K MV +E+ I S++G+NP +G V+R+ PE TEERR LVK Sbjct: 59 PEARMIQIQPWEKSMVKEIEKAILTSDIGINPTNDGTVIRLVFPELTEERRKELVKDVKK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E K++VRNIRRDG D KK K + SED + LE+++QK+TD I I+ E K Sbjct: 119 KGEAGKVAVRNIRRDGNDTFKK-LKGTEVSEDEIKDLEDELQKLTDKYIAQIEKAVEAKS 177 Query: 181 KEIM 184 KE+M Sbjct: 178 KEVM 181 >gi|296136576|ref|YP_003643818.1| ribosome recycling factor [Thiomonas intermedia K12] gi|295796698|gb|ADG31488.1| ribosome recycling factor [Thiomonas intermedia K12] Length = 186 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 76/177 (42%), Positives = 115/177 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N +++M +I LK D+ +RTGR +LD V V+ YG+ + +NQVAN+ +++ R + Sbjct: 8 KNTEEKMHKSIESLKLDLAKVRTGRAHTGLLDHVMVDYYGTMMAINQVANMNLVDARTIS 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K+MV +VE+ I ES+LGLNP +G ++R+P+P TEERR LVKV E +K+ Sbjct: 68 VQPWEKKMVQAVEKAIRESDLGLNPQTQGDIIRVPMPALTEERRRDLVKVIKQEGEGAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +VRN+RRD LK K+ + SED ++++QKITD I ID +K+ EIM Sbjct: 128 AVRNLRRDANQSLKDLVKAKEISEDDERRAQDEVQKITDRCIAEIDKQLAQKEAEIM 184 >gi|240146850|ref|ZP_04745451.1| ribosome recycling factor [Roseburia intestinalis L1-82] gi|257200994|gb|EEU99278.1| ribosome recycling factor [Roseburia intestinalis L1-82] gi|291536044|emb|CBL09156.1| ribosome recycling factor [Roseburia intestinalis M50/1] gi|291538537|emb|CBL11648.1| ribosome recycling factor [Roseburia intestinalis XB6B4] Length = 184 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 76/173 (43%), Positives = 108/173 (62%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 ++M T++ L ++ ++R GR +P +LD +KV+ YG+ + QVANV V EPRM+ + W Sbjct: 10 EKMQKTMNNLSEEFGSIRAGRANPHVLDKLKVDYYGTPTAIQQVANVNVPEPRMIQIQPW 69 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 + MV +E+ I S+LG+NP +G+V+R+ PE TEERR L K E +K+++RN Sbjct: 70 EASMVKEIEKAILTSDLGINPTNDGKVIRLLFPELTEERRKELAKDVKKKGENAKVAIRN 129 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 IRRD D KK KS SED V LE+ QK+TD I ID E K KEI+ Sbjct: 130 IRRDANDSFKKLSKSADVSEDEVKELEDGAQKMTDKYITEIDKAVEAKTKEIL 182 >gi|195978553|ref|YP_002123797.1| ribosome recycling factor [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225868107|ref|YP_002744055.1| ribosome recycling factor [Streptococcus equi subsp. zooepidemicus] gi|225870940|ref|YP_002746887.1| ribosome recycling factor [Streptococcus equi subsp. equi 4047] gi|226749941|sp|B4U467|RRF_STREM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|254809531|sp|C0MBT1|RRF_STRE4 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|259494555|sp|C0MCC9|RRF_STRS7 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|195975258|gb|ACG62784.1| ribosome recycling factor Frr [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225700344|emb|CAW94656.1| ribosome recycling factor [Streptococcus equi subsp. equi 4047] gi|225701383|emb|CAW98452.1| ribosome recycling factor [Streptococcus equi subsp. zooepidemicus] Length = 185 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 71/178 (39%), Positives = 115/178 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+R + L ++ ++R GR + S+LD ++V+ YG+ PLNQ+A++TV E R+L Sbjct: 6 IETAKERFTQSHHSLAREYASIRAGRANASLLDRIQVDYYGAPTPLNQLASITVPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +DK + +ER ++ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LISPFDKSSIKDIERALNASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGETAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +S+RNIRRD MD KK K+ + +ED + +LE DIQK TD +K ID +K+KE++ Sbjct: 126 VSIRNIRRDAMDEAKKQEKAKEITEDELKALEKDIQKATDEAVKEIDRMTADKEKELL 183 >gi|304388991|ref|ZP_07371038.1| ribosome recycling factor [Neisseria meningitidis ATCC 13091] gi|304337125|gb|EFM03312.1| ribosome recycling factor [Neisseria meningitidis ATCC 13091] Length = 203 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 77/184 (41%), Positives = 117/184 (63%), Gaps = 1/184 (0%) Query: 2 NQVIDLQNIKD-RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 N + D+Q + +M ++ LK+++ +RTGR +LD V+VE +GS VP++QVANVT+ Sbjct: 18 NMINDIQKTAEGKMQRSVEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVANVTL 77 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 L+ R + V ++ M A VE+ I +SNLGLNP G ++R+P+P TEERR L+KV Sbjct: 78 LDARTIGVKPFEGNMAAKVEKAIRDSNLGLNPAAVGDLIRVPMPMLTEERRKDLIKVVRG 137 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE+ ++S+RN+RRD DH+KK K + SED E +QK+TD I D K+ Sbjct: 138 EAEEGRVSIRNVRRDANDHIKKLLKDKEISEDEARRGEEAVQKLTDKYITEADKLLTAKE 197 Query: 181 KEIM 184 +++M Sbjct: 198 EDLM 201 >gi|312871359|ref|ZP_07731455.1| ribosome recycling factor [Lactobacillus iners LEAF 3008A-a] gi|312872418|ref|ZP_07732487.1| ribosome recycling factor [Lactobacillus iners LEAF 2062A-h1] gi|312873341|ref|ZP_07733394.1| ribosome recycling factor [Lactobacillus iners LEAF 2052A-d] gi|311091131|gb|EFQ49522.1| ribosome recycling factor [Lactobacillus iners LEAF 2052A-d] gi|311092000|gb|EFQ50375.1| ribosome recycling factor [Lactobacillus iners LEAF 2062A-h1] gi|311093111|gb|EFQ51459.1| ribosome recycling factor [Lactobacillus iners LEAF 3008A-a] Length = 185 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 75/183 (40%), Positives = 122/183 (66%), Gaps = 1/183 (0%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ VI ++ K M +IS +K++ +R G + S+LD +KVE YG PL Q++++T+ Sbjct: 1 MSNVI-IEKAKANMSKSISVFEKELGGIRAGVANASLLDGIKVEYYGVPTPLTQMSSITI 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R+L+++ +DK + ++E I S+LG+ P +G V+RI +P+ T ERR+ + K Sbjct: 60 PEARVLMITPFDKTTLNNIEHAILASDLGITPANDGSVVRIVIPQLTGERRIEIAKKVGK 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE++KI++RNIRR+G+D LKK +K G+ +ED + E DIQKITD K++D+ ++K Sbjct: 120 LAEQAKIAIRNIRREGIDALKKQQKDGEITEDDLHKFEKDIQKITDDATKDVDALADKKS 179 Query: 181 KEI 183 KEI Sbjct: 180 KEI 182 >gi|197119126|ref|YP_002139553.1| ribosome recycling factor [Geobacter bemidjiensis Bem] gi|226749930|sp|B5EHV8|RRF_GEOBB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|197088486|gb|ACH39757.1| ribosome recycling factor [Geobacter bemidjiensis Bem] Length = 185 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 74/173 (42%), Positives = 110/173 (63%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M +I L+K+ +RTGR S S+LD +KV++YG+ PLNQVA + + E R + +S WD Sbjct: 13 MDKSIESLRKEYQKVRTGRASTSLLDDIKVDSYGTLSPLNQVATLAIPEARTITISPWDS 72 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 +M+A +E+ I SNLGLNP +G+++R+ +P TEERR +VK AE +K+++RNIR Sbjct: 73 KMIAPIEKAIMNSNLGLNPANDGKMIRLTLPPLTEERRKDIVKQLKRDAEDAKVALRNIR 132 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RD +D LKK K SED E ++Q T+S + +D K+KE+M Sbjct: 133 RDAIDQLKKLEKDKSISEDEQKRAEKEVQDFTNSHVAKVDEVLLHKEKEVMEV 185 >gi|188533040|ref|YP_001906837.1| ribosome recycling factor [Erwinia tasmaniensis Et1/99] gi|238689729|sp|B2VE11|RRF_ERWT9 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|188028082|emb|CAO95939.1| Ribosome recycling factor [Erwinia tasmaniensis Et1/99] Length = 185 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 76/174 (43%), Positives = 111/174 (63%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM + + + +RTGR SPS+LD + V+ YGS PL Q+A+VTV + R L ++V+D Sbjct: 12 RMEKCVEAFRNHISKIRTGRASPSILDGIMVDYYGSATPLRQLASVTVEDSRTLKINVFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + + A+VE+ I S+LGLNP G +R+P+P TEERR L+KV AE+ ++SVRN+ Sbjct: 72 RSIGAAVEKAIMTSDLGLNPSSAGSDIRVPLPALTEERRKDLIKVVRGEAEQGRVSVRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD D LK K + SED + D+QK+TD IK +D+ +K+ E+M F Sbjct: 132 RRDANDKLKALLKDKEISEDDDRRAQEDVQKMTDIFIKKVDAALADKETELMDF 185 >gi|148992922|ref|ZP_01822541.1| ribosome recycling factor [Streptococcus pneumoniae SP9-BS68] gi|168490239|ref|ZP_02714438.1| ribosome recycling factor [Streptococcus pneumoniae SP195] gi|147928374|gb|EDK79390.1| ribosome recycling factor [Streptococcus pneumoniae SP9-BS68] gi|183571379|gb|EDT91907.1| ribosome recycling factor [Streptococcus pneumoniae SP195] gi|332073277|gb|EGI83756.1| ribosome recycling factor [Streptococcus pneumoniae GA17570] Length = 185 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 73/179 (40%), Positives = 114/179 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+RM + L ++ +R GR + S+LD V VE YG PLNQ+A++T+ E R+L Sbjct: 6 IEKAKERMTQSHQSLAREFGGIRAGRANASLLDRVHVEYYGVETPLNQIASITIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + +ER ++ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRNIRRD MD KK K+ + +ED + +LE DIQK+TD +K+ID K+KE++ Sbjct: 126 VAVRNIRRDAMDEAKKREKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELLE 184 >gi|199597107|ref|ZP_03210539.1| Ribosome recycling factor [Lactobacillus rhamnosus HN001] gi|258508619|ref|YP_003171370.1| ribosome recycling factor [Lactobacillus rhamnosus GG] gi|199591911|gb|EDY99985.1| Ribosome recycling factor [Lactobacillus rhamnosus HN001] gi|257148546|emb|CAR87519.1| Ribosome-recycling factor [Lactobacillus rhamnosus GG] gi|259649926|dbj|BAI42088.1| ribosome recycling factor [Lactobacillus rhamnosus GG] Length = 185 Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 75/184 (40%), Positives = 117/184 (63%), Gaps = 2/184 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 NQ+I+ + MG T L++++ +R GR + S+L+ + V+ YG+ PLNQ+A +TV Sbjct: 3 NQIIEQAKVN--MGKTEESLQRELGNIRAGRANASLLNQITVDYYGAPTPLNQMAAITVP 60 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 E R+L +S +DK + ++E I+ S+LG+NP +G V+R+ +P+ T ERR + K + Sbjct: 61 EARVLQISPYDKSSLKNIETAINASDLGINPANDGDVIRLVIPQLTGERRKEIAKEVGKF 120 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 +E +KI+VRNIRR+G+D LK+ K G +ED + LE D+QK TD K ID K+K Sbjct: 121 SENAKIAVRNIRREGLDKLKRQEKDGDITEDELHRLEKDMQKATDDATKRIDEIAAAKEK 180 Query: 182 EIMH 185 EI Sbjct: 181 EITE 184 >gi|153831282|ref|ZP_01983949.1| ribosome recycling factor [Vibrio cholerae 623-39] gi|148873240|gb|EDL71375.1| ribosome recycling factor [Vibrio cholerae 623-39] Length = 185 Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 74/179 (41%), Positives = 112/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK + +RTGR PS+L + V+ YG+ PLNQVANV + R L Sbjct: 7 KDAQERMEKSVEALKNGLSKIRTGRAHPSLLTGISVDYYGAPTPLNQVANVIAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ + VE+ I S+LGLNP+ G ++R+P+P TEERR LVK+ AE ++ Sbjct: 67 ITVFDRXLTQKVEKAILMSDLGLNPMSAGTIIRVPLPPLTEERRRDLVKIVRGEAEGGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD + LK K + SED + +IQK+TD+ +K ID K+KE+M Sbjct: 127 AVRNIRRDANNDLKALLKDKEISEDDERRAQEEIQKLTDAAVKKIDDVLAAKEKELMEV 185 >gi|332362392|gb|EGJ40192.1| ribosome recycling factor [Streptococcus sanguinis SK1056] Length = 185 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 71/178 (39%), Positives = 115/178 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+RM + L ++ ++R GR + S+LD + VE YG PLNQ+A++T+ E R+L Sbjct: 6 VEKAKERMTHSHQSLAREFGSIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + +ER ++ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LVTPFDKSSIKDIERALNASDLGITPASDGSVIRLVIPALTEETRRDLAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++RNIRRD MD KK K+ + +ED + +LE DIQK+TD +K+ID K+KE++ Sbjct: 126 VAIRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDEMTVNKEKELL 183 >gi|282880955|ref|ZP_06289646.1| ribosome recycling factor [Prevotella timonensis CRIS 5C-B1] gi|281305178|gb|EFA97247.1| ribosome recycling factor [Prevotella timonensis CRIS 5C-B1] Length = 186 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 76/178 (42%), Positives = 116/178 (65%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ ++RM ++L++ + +R GR + ++LD V V +YGS VPLNQVANV+V + R + Sbjct: 8 LKEAEERMQMAATYLEESLSRVRAGRANVAILDGVMVNSYGSMVPLNQVANVSVPDARTI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK+ + +E+ I +S++G+ P G+++R+ +P+ TEERR LVK + EK+K Sbjct: 68 AIKPWDKKAIKDIEKAIMDSDVGITPENNGEIIRLGIPQPTEERRRDLVKQCNKIGEKAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 I VRN+R + D LKK+ K G SED EN++Q + D IKN+D EEK KEIM Sbjct: 128 IEVRNVRSEIKDRLKKAVKDG-LSEDAGKDAENELQNVHDKYIKNVDRLLEEKTKEIM 184 >gi|291523272|emb|CBK81565.1| ribosome recycling factor [Coprococcus catus GD/7] Length = 185 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 74/178 (41%), Positives = 112/178 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 LQ + +M ++ L+++ T+R GR +P +LD +KV+ YG+ PL QV NVTV E R+L Sbjct: 6 LQPYETKMQKSLDALEREYTTIRAGRANPHILDKLKVDYYGTPTPLQQVGNVTVPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ W+ +++ +E+ I S++G+ P +G+ +R+ PE TEERR L K + +K Sbjct: 66 MIQPWESKLIKDIEKAILASDIGITPTNDGKSIRLVFPELTEERRKELAKDVKKKGDAAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +VRNIRRDG D KKS K+ + SED A L+ +QKITD + +D E K KEIM Sbjct: 126 TAVRNIRRDGNDAFKKSNKAKEISEDEYAELQEKLQKITDKYVAMVDKAVEAKTKEIM 183 >gi|157147397|ref|YP_001454716.1| hypothetical protein CKO_03195 [Citrobacter koseri ATCC BAA-895] gi|157084602|gb|ABV14280.1| hypothetical protein CKO_03195 [Citrobacter koseri ATCC BAA-895] Length = 173 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 73/173 (42%), Positives = 111/173 (64%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M + K + +RTGR SPS+LD + VE YG+ PL Q+A+VTV + R L ++V+D+ Sbjct: 1 MEKCVEAFKNQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDR 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 M +VE+ I S+LGLNP G +R+P+P TEERR L K+ AE+++++VRN+R Sbjct: 61 SMSPAVEKAIMASDLGLNPSSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RD D +K K + SED ++++QK+TD+ IK +D+ EK+ E+M F Sbjct: 121 RDANDKVKALLKDKEISEDDDRRSQDEVQKLTDAAIKKVDAALTEKEAELMQF 173 >gi|313885301|ref|ZP_07819052.1| ribosome recycling factor [Eremococcus coleocola ACS-139-V-Col8] gi|312619407|gb|EFR30845.1| ribosome recycling factor [Eremococcus coleocola ACS-139-V-Col8] Length = 185 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 74/179 (41%), Positives = 115/179 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ KDRM ++ +++ ++R G + S+LD ++V YG PLNQ+A++TV E RML Sbjct: 6 LKETKDRMAKSVEAFSRELASIRAGVANASILDRIQVTYYGVPTPLNQLASITVPEARML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK +E+ I +S++G+NP +G V+R+ +P T+ERR LVKV E +K Sbjct: 66 LVTPYDKSSTTEIEKAILQSDVGINPTSDGDVIRLVIPALTKERREELVKVVGKENETAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 IS+RNIRRD +D KK K+ + +ED V E IQ ITD +K +D+ + K+ EIM+ Sbjct: 126 ISIRNIRRDQIDAAKKLEKNNELTEDDVKDYEKQIQAITDEKVKELDALAKAKEDEIMN 184 >gi|24380004|ref|NP_721959.1| ribosome recycling factor [Streptococcus mutans UA159] gi|290580017|ref|YP_003484409.1| putative ribosome recycling factor [Streptococcus mutans NN2025] gi|34924954|sp|Q8DSY2|RRF_STRMU RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|24377992|gb|AAN59265.1|AE014993_9 putative ribosome recycling factor [Streptococcus mutans UA159] gi|254996916|dbj|BAH87517.1| putative ribosome recycling factor [Streptococcus mutans NN2025] Length = 185 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 74/179 (41%), Positives = 115/179 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+R + L ++ ++R GR + S+LD ++VE YG PLNQ+A++TV E R+L Sbjct: 6 VEKAKERFEQSHQSLAREFGSIRAGRANASLLDRIEVEYYGVPTPLNQLASITVPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +VS +DK + +E I+ S++G+NP +G V+R+ +P TEE R L K E +K Sbjct: 66 LVSPFDKSSLKDIEHAINASDIGINPANDGSVIRLVIPALTEETRKELAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +++RNIRRD MD KK K + +ED + SLE DIQK+TD +K+IDS K+KE++ Sbjct: 126 VAIRNIRRDAMDEAKKQEKIKEITEDELKSLEKDIQKVTDEAVKHIDSMTANKEKELLE 184 >gi|300783895|ref|YP_003764186.1| ribosome recycling factor [Amycolatopsis mediterranei U32] gi|299793409|gb|ADJ43784.1| ribosome recycling factor [Amycolatopsis mediterranei U32] Length = 187 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 74/184 (40%), Positives = 119/184 (64%), Gaps = 2/184 (1%) Query: 4 VID--LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 VID L + +++M +S K ++ ++RTGR S +M + VE YGS PLNQ+A+V V Sbjct: 3 VIDETLLDAEEKMEKAVSVAKDELQSVRTGRASSAMFSRIVVEYYGSPTPLNQLASVNVP 62 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 E RM ++ +D+ + ++E+ I ES+LG+NP +GQV+RI +P+ TEERR +VKVA Sbjct: 63 EARMALIKPYDQSQLNAIEKAIRESDLGVNPSNDGQVIRIVIPQLTEERRKEMVKVAKGK 122 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 E +++S+R+IRR D L + K G+A ED VA E ++Q +TD+ + +D + K+ Sbjct: 123 GEDARVSIRSIRRKAKDELDRIAKDGEAGEDDVARAEKELQNLTDTYVHKVDELIKHKEA 182 Query: 182 EIMH 185 E++ Sbjct: 183 ELLE 186 >gi|254670407|emb|CBA05960.1| Ribosome recycling factor [Neisseria meningitidis alpha153] Length = 208 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 77/184 (41%), Positives = 117/184 (63%), Gaps = 1/184 (0%) Query: 2 NQVIDLQNIKD-RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 N + D+Q + +M ++ LK+++ +RTGR +LD V+VE +GS VP++QVANVT+ Sbjct: 23 NMINDIQKTAEGKMQRSVEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVANVTL 82 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 L+ R + V ++ M A VE+ I +SNLGLNP G ++R+P+P TEERR L+KV Sbjct: 83 LDARTIGVKPFEGNMAAKVEKAIRDSNLGLNPAAVGDLIRVPMPMLTEERRKDLIKVVRG 142 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE+ ++S+RN+RRD DH+KK K + SED E +QK+TD I D K+ Sbjct: 143 EAEEGRVSIRNVRRDANDHIKKLLKDKEISEDEARRGEEAVQKLTDKYITEADKLLTTKE 202 Query: 181 KEIM 184 +++M Sbjct: 203 EDLM 206 >gi|254805769|ref|YP_003083990.1| Ribosome recycling factor [Neisseria meningitidis alpha14] gi|254669311|emb|CBA08313.1| Ribosome recycling factor [Neisseria meningitidis alpha14] gi|316985712|gb|EFV64658.1| ribosome recycling factor [Neisseria meningitidis H44/76] Length = 208 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 77/184 (41%), Positives = 117/184 (63%), Gaps = 1/184 (0%) Query: 2 NQVIDLQNIKD-RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 N + D+Q + +M ++ LK+++ +RTGR +LD V+VE +GS VP++QVANVT+ Sbjct: 23 NMINDIQKTAEGKMQRSVEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVANVTL 82 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 L+ R + V ++ M A VE+ I +SNLGLNP G ++R+P+P TEERR L+KV Sbjct: 83 LDARTIGVKPFEGNMAAKVEKAIRDSNLGLNPAAVGDLIRVPMPMLTEERRKDLIKVVRG 142 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE+ ++S+RN+RRD DH+KK K + SED E +QK+TD I D K+ Sbjct: 143 EAEEGRVSIRNVRRDANDHIKKLLKDKEISEDEARRGEEAVQKLTDKYITEADKLLTAKE 202 Query: 181 KEIM 184 +++M Sbjct: 203 EDLM 206 >gi|220903796|ref|YP_002479108.1| ribosome recycling factor [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868095|gb|ACL48430.1| ribosome recycling factor [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 186 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 72/180 (40%), Positives = 114/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +DRM ++ L +D LRTGR + +++D +K + YG+ P++Q+A++ V + R L Sbjct: 7 LLDAEDRMEKALAALDRDFAKLRTGRATTALVDGIKADYYGTPTPISQMASIAVPDSRTL 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK +A +E+ I +S+LGL P+ +G+++RI +P TEERR L KVA Y+E+ K Sbjct: 67 TIQPWDKGGIALIEKAILKSDLGLTPVNDGKLIRIVMPPLTEERRKELSKVARKYSEEGK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RRD D LKK K +ED +D+QK+TD + +D K+KEIM Sbjct: 127 VAVRNVRRDANDSLKKLEKEKTITEDEQKRATDDVQKLTDKYVAEVDKRCAAKEKEIMEI 186 >gi|168483015|ref|ZP_02707967.1| ribosome recycling factor [Streptococcus pneumoniae CDC1873-00] gi|172043555|gb|EDT51601.1| ribosome recycling factor [Streptococcus pneumoniae CDC1873-00] gi|332201410|gb|EGJ15480.1| ribosome recycling factor [Streptococcus pneumoniae GA47368] Length = 185 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 76/185 (41%), Positives = 116/185 (62%), Gaps = 1/185 (0%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M VI ++ K+RM + L ++ +R GR + S+LD V VE YG PLNQ+A++T+ Sbjct: 1 MANVI-IEKAKERMTQSHQSLAREFGGIRAGRANASLLDRVHVEYYGVETPLNQIASITI 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R+L+V+ +DK + +ER ++ S LG+ P +G V+R+ +P TEE R L K Sbjct: 60 PEARVLLVTPFDKSSLKDIERALNASELGITPANDGSVIRLVIPALTEETRRDLAKEVKK 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E +K++VRNIRRD MD KK K+ + +ED + +LE DIQK+TD +K+ID K+ Sbjct: 120 VGENAKVAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKE 179 Query: 181 KEIMH 185 KE++ Sbjct: 180 KELLE 184 >gi|194099964|ref|YP_002003103.1| ribosome recycling factor [Neisseria gonorrhoeae NCCP11945] gi|291042824|ref|ZP_06568565.1| ribosome-recycling factor [Neisseria gonorrhoeae DGI2] gi|293398155|ref|ZP_06642360.1| ribosome recycling factor [Neisseria gonorrhoeae F62] gi|193935254|gb|ACF31078.1| Rrf [Neisseria gonorrhoeae NCCP11945] gi|291013258|gb|EFE05224.1| ribosome-recycling factor [Neisseria gonorrhoeae DGI2] gi|291611418|gb|EFF40488.1| ribosome recycling factor [Neisseria gonorrhoeae F62] Length = 208 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 77/184 (41%), Positives = 117/184 (63%), Gaps = 1/184 (0%) Query: 2 NQVIDLQNIKD-RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 N + D+Q + +M ++ LK+++ +RTGR +LD V+VE +GS VP++QVANVT+ Sbjct: 23 NMINDIQKTAEGKMQRSVEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVANVTL 82 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 L+ R + V ++ M A VE+ I +SNLGLNP G ++R+P+P TEERR L+KV Sbjct: 83 LDARTIGVKPFEGNMAAKVEKAIRDSNLGLNPAAVGDLIRVPMPMLTEERRKDLIKVVRG 142 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE+ ++S+RN+RRD DH+KK K + SED E +QK+TD I D K+ Sbjct: 143 EAEEGRVSIRNVRRDANDHIKKLLKDKEISEDEARRGEEAVQKLTDKYIAEADKVLAAKE 202 Query: 181 KEIM 184 +++M Sbjct: 203 EDLM 206 >gi|315221842|ref|ZP_07863754.1| ribosome recycling factor [Streptococcus anginosus F0211] gi|315189075|gb|EFU22778.1| ribosome recycling factor [Streptococcus anginosus F0211] Length = 185 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 71/179 (39%), Positives = 114/179 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+RM + L ++ ++R GR + S+LD + VE YG PLNQ+A++T+ E R+L Sbjct: 6 VEKAKERMTQSHQSLAREFGSIRAGRANASLLDRISVEYYGVETPLNQIASITIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + +E ++ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LVTPFDKSSIKDIEHALNASDLGITPASDGTVIRLVIPALTEETRRNLAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 I++RNIRRD MD KK K+ + +ED + +LE DIQK+TD +K+ID K+KE++ Sbjct: 126 IAIRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDEAVKHIDEMTASKEKELIE 184 >gi|270292949|ref|ZP_06199160.1| ribosome recycling factor [Streptococcus sp. M143] gi|270278928|gb|EFA24774.1| ribosome recycling factor [Streptococcus sp. M143] Length = 185 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 72/179 (40%), Positives = 114/179 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+RM + L ++ +R GR + S+LD + VE YG PLNQ+A++T+ E R+L Sbjct: 6 VEKAKERMTQSHQSLAREFGGIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + +ER ++ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRNIRRD MD KK K+ + +ED + +LE DIQK+TD +K+ID K+KE++ Sbjct: 126 VAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELLE 184 >gi|194337415|ref|YP_002019209.1| ribosome recycling factor [Pelodictyon phaeoclathratiforme BU-1] gi|238693401|sp|B4SER6|RRF_PELPB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|194309892|gb|ACF44592.1| ribosome recycling factor [Pelodictyon phaeoclathratiforme BU-1] Length = 186 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 74/177 (41%), Positives = 111/177 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q I+ RM TI + ++ ++RTG+ + ++LD VKVEAYG +PL QV N++VL+ L+ Sbjct: 8 QKIEPRMKKTIEAFQHEIASIRTGKATTALLDRVKVEAYGQQMPLKQVGNISVLDVHTLI 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +WDK MV++ ER I ++NLGLNP +GQ +R+ +P TEERR VK+ + E SK+ Sbjct: 68 VQIWDKSMVSATERAIRDANLGLNPAADGQNIRVSIPPLTEERRKEFVKLTKKFGEDSKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 S+RN+RRD + ++K KS SED + D ++ K + K+KEIM Sbjct: 128 SLRNLRRDMIQEIEKLEKSKAISEDDKNKGKKDADEMLHKFEKQLTELIVHKEKEIM 184 >gi|291616348|ref|YP_003519090.1| Frr [Pantoea ananatis LMG 20103] gi|291151378|gb|ADD75962.1| Frr [Pantoea ananatis LMG 20103] Length = 185 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 75/174 (43%), Positives = 112/174 (64%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM + K + +RTGR SPS+LD + VE YG+ PL Q+A+VTV + R L ++V+D Sbjct: 12 RMDKCVEAFKTTISKVRTGRASPSLLDGIIVEYYGTPTPLRQLASVTVEDSRTLKINVFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + + +VE+ I S+LGLNP G +R+P+P TEERR L+K+ AE+ ++SVRN+ Sbjct: 72 RSLGPAVEKAIMASDLGLNPNSAGSDIRVPLPALTEERRKDLIKIVRGEAEQGRVSVRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD D +K K + SED +++IQK+TD+ IK +D+ EK+ E+M F Sbjct: 132 RRDANDKIKALLKDKEISEDDERRSQDEIQKMTDAHIKKVDAALAEKEAELMDF 185 >gi|254496412|ref|ZP_05109292.1| ribosome recycling factor [Legionella drancourtii LLAP12] gi|254354359|gb|EET13014.1| ribosome recycling factor [Legionella drancourtii LLAP12] Length = 185 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 78/179 (43%), Positives = 111/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ + RM TI L DM +RTGR + +LD V+V+ YG+ PLNQ+AN+T + R + Sbjct: 7 QDSEKRMRKTIDSLHIDMSKIRTGRANVGLLDHVQVDYYGTLTPLNQIANITASDSRTIS 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+ W+K MVA+VE+ I S+LGLNP G +R+P+P TEERR L+KV E+ K+ Sbjct: 67 VTPWEKNMVAAVEKAILTSDLGLNPATNGNAIRVPMPPLTEERRKELIKVVRNEGEQGKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RNIRRD + LK+ K SED + IQK+TD I +D+ K+K++M Sbjct: 127 SIRNIRRDANNQLKELVKEKAISEDDERRAVDVIQKLTDKYILEVDALLAVKEKDLMEV 185 >gi|78356175|ref|YP_387624.1| ribosome recycling factor [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|123552884|sp|Q313G7|RRF_DESDG RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|78218580|gb|ABB37929.1| ribosome recycling factor [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 184 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 73/179 (40%), Positives = 116/179 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++RM ++ L ++ LRTGR S S++D +KV+ YG+ P+NQ+A+V V + R + Sbjct: 5 LLETEERMEKAVAALDREFGRLRTGRASTSLVDSIKVDYYGTPTPINQLASVAVPDSRTI 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WD+ A VE+ I +S+LGL PI +G+++RI +P TEERR LVKVA Y E +K Sbjct: 65 TIQPWDRGAFALVEKAIMQSDLGLTPINDGKIIRISMPPLTEERRKELVKVAKKYTEDAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRNIRRD + +KK K +ED + ++++QK+TD+ + + +K+KEIM Sbjct: 125 VAVRNIRRDANEQIKKMEKDKAITEDDMKRGQDEVQKLTDAFVAKSEKVLAKKEKEIME 183 >gi|225619145|ref|YP_002720371.1| ribosome recycling factor [Brachyspira hyodysenteriae WA1] gi|225213964|gb|ACN82698.1| ribosome recycling factor [Brachyspira hyodysenteriae WA1] Length = 182 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 81/176 (46%), Positives = 112/176 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ KDRM IS L+ D+ +RTGR + S+LD VKVEAYGS +PL QV NV+ + R ++ Sbjct: 4 ESYKDRMEKAISSLQNDLKGIRTGRANASILDGVKVEAYGSSMPLKQVGNVSTPDSRTIM 63 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +DK +V+ +E+ I +++LG NP +G +RI VPE T+ERR L K E++KI Sbjct: 64 IQPFDKGLVSDIEKAILKADLGFNPFNDGGNIRIVVPELTKERREELKKGVRHRGEEAKI 123 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +VRNIRRD D +KK K +ED S E IQ TDS IK ID K+KE+ Sbjct: 124 AVRNIRRDENDKIKKELKDKTITEDESKSQEKKIQNDTDSYIKKIDDMINTKEKEL 179 >gi|88857974|ref|ZP_01132616.1| ribosome releasing factor [Pseudoalteromonas tunicata D2] gi|88819591|gb|EAR29404.1| ribosome releasing factor [Pseudoalteromonas tunicata D2] Length = 185 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 79/182 (43%), Positives = 115/182 (63%), Gaps = 1/182 (0%) Query: 6 DLQ-NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D+Q N RM ++ L + +RTGR PS+LD +KV YG+ PLNQVANV+V + R Sbjct: 4 DIQKNAATRMQKSVEALVSQLSKIRTGRAHPSLLDGLKVMYYGAETPLNQVANVSVEDAR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 L +SV+DK + +VE+ I S+LGLNP+ G ++R+P+P TEERR L+KV A AE Sbjct: 64 TLSISVFDKSLGQAVEKAILASDLGLNPMSSGMMIRVPLPPLTEERRKDLIKVVRAEAEA 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++++RNIRRD +K K SED +++IQK+TD IK++D+ K+ E+M Sbjct: 124 GRVAIRNIRRDANADVKALLKDKAISEDEQRKSDDEIQKLTDKFIKDLDAKLAVKEAELM 183 Query: 185 HF 186 Sbjct: 184 EI 185 >gi|58698901|ref|ZP_00373766.1| ribosome recycling factor [Wolbachia endosymbiont of Drosophila ananassae] gi|225630154|ref|YP_002726945.1| ribosome releasing factor [Wolbachia sp. wRi] gi|254809543|sp|C0R2L2|RRF_WOLWR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|58534582|gb|EAL58716.1| ribosome recycling factor [Wolbachia endosymbiont of Drosophila ananassae] gi|225592135|gb|ACN95154.1| ribosome releasing factor [Wolbachia sp. wRi] Length = 185 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 75/175 (42%), Positives = 113/175 (64%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K+RM TI D+ +RTGR S S+LD + V YG H LNQVA V+V++ + L + + Sbjct: 10 KERMLKTIQSFHDDIKGVRTGRASASLLDGIVVNIYGGHQKLNQVAGVSVIDNKTLSIKI 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 WD +V V+ I +NL LNP+VEG +RI +P+ T+E R LVK+ H +AE ++I++R Sbjct: 70 WDINVVGEVKNAILNANLNLNPVVEGNTIRIALPDLTQETREKLVKLLHQFAENARIAIR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 NIRRD M+ +K +++ + SED + +IQ ITD+ IK ID K+K+I++ Sbjct: 130 NIRRDIMEETEKMKENKEISEDDFHGAKKEIQNITDNNIKKIDGELSIKEKDILN 184 >gi|86610317|ref|YP_479079.1| ribosome recycling factor [Synechococcus sp. JA-2-3B'a(2-13)] gi|123500677|sp|Q2JHW2|RRF_SYNJB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|86558859|gb|ABD03816.1| ribosome recycling factor [Synechococcus sp. JA-2-3B'a(2-13)] Length = 182 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 74/182 (40%), Positives = 116/182 (63%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 ++L I++ M + ++ T+RTGR + S+LD ++VE YG PL +A++T + Sbjct: 1 MELAEIEELMNKAVQATQRSFNTVRTGRANSSLLDRIQVEYYGVPTPLKALASLTTPDSS 60 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 L++ +D +A++ER I S+LGL P +G+V+R+ +P TEERR L K AE+ Sbjct: 61 TLLIQPFDPSTLAAIERAIVASDLGLTPSNDGKVVRLTIPPLTEERRKELSKQVAKLAEE 120 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++S+RNIRRDG+D ++K K+G+ SED SL++DIQK+TD IK ID EK+KE+ Sbjct: 121 GRVSIRNIRRDGIDSVRKREKNGELSEDESKSLQDDIQKLTDRYIKKIDELLAEKEKELT 180 Query: 185 HF 186 Sbjct: 181 TL 182 >gi|312869006|ref|ZP_07729183.1| ribosome recycling factor [Lactobacillus oris PB013-T2-3] gi|311095432|gb|EFQ53699.1| ribosome recycling factor [Lactobacillus oris PB013-T2-3] Length = 186 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 72/179 (40%), Positives = 117/179 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + K +M + L++ + +R G+ + S+L+ VKVE YG+ PLNQVA++T+ E R L Sbjct: 8 LNDAKQKMKKSGDALQRSLADIRAGQANASLLNSVKVEYYGAPTPLNQVASITIPEARQL 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +D+ ++ +E+ I+ SNLGL P +G +R+ +P+ TE+RR LVK A EKSK Sbjct: 68 LITPYDESILEEIEKSIYASNLGLTPQNDGSAIRLIIPQLTEDRRKELVKDVKAELEKSK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRN+RR+ MD LKK K+G ++D LE +Q TD+ IKN++ K+KE++ Sbjct: 128 VAVRNVRREAMDDLKKGNKNGDFNDDEFHDLEKQVQNETDAGIKNLEDIAAAKEKELLQ 186 >gi|258627353|ref|ZP_05722137.1| Ribosome-recycling factor [Vibrio mimicus VM603] gi|258580391|gb|EEW05356.1| Ribosome-recycling factor [Vibrio mimicus VM603] Length = 173 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 74/173 (42%), Positives = 108/173 (62%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M ++ LK + +RTGR PS+L + V+ YG+ PLNQVANV + R L ++V+D+ Sbjct: 1 MEKSVEALKNGLSKIRTGRAHPSLLTGISVDYYGAPTPLNQVANVVAEDARTLAITVFDR 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 ++ VE+ I S+LGLNP+ G ++R+P+P TEERR LVK+ AE +++VRNIR Sbjct: 61 DLTQKVEKAILMSDLGLNPMSAGTIIRVPLPPLTEERRRDLVKIVRGEAEGGRVAVRNIR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RD + LK K + SED + DIQK+TD+ +K ID K+KE+M Sbjct: 121 RDANNDLKGLLKDKEISEDDERRAQEDIQKLTDAAVKKIDDVLAAKEKELMEV 173 >gi|229824928|ref|ZP_04450997.1| hypothetical protein GCWU000182_00277 [Abiotrophia defectiva ATCC 49176] gi|229790931|gb|EEP27045.1| hypothetical protein GCWU000182_00277 [Abiotrophia defectiva ATCC 49176] Length = 184 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 73/173 (42%), Positives = 116/173 (67%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 D+M TI+ L ++ +T+R GR +P +LD +KV+ YG PL VAN++V E R++ + W Sbjct: 10 DKMNKTINNLNEEYITIRAGRANPHILDKIKVDYYGQPSPLQSVANISVPEARIIQIQPW 69 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 + ++ ++E+ I+ +NLG+ P +G+ +R+ PE TEERR L K AE++KI++RN Sbjct: 70 EAGLIKAIEKEINMANLGVVPNNDGKSIRLVFPELTEERRKELSKDIKKKAEQAKIAIRN 129 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 IRRD ++H KK +K+ + +ED + LE++IQKITD I+ E+K KEIM Sbjct: 130 IRRDAVEHFKKQQKANEITEDDLKDLEDEIQKITDKFSDEIEKMTEDKTKEIM 182 >gi|91775880|ref|YP_545636.1| ribosome recycling factor [Methylobacillus flagellatus KT] gi|123254405|sp|Q1H142|RRF_METFK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|91709867|gb|ABE49795.1| ribosome recycling factor [Methylobacillus flagellatus KT] Length = 185 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 76/182 (41%), Positives = 117/182 (64%), Gaps = 4/182 (2%) Query: 7 LQNIKD----RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLE 62 +Q++K+ +M +I LK D+ +RTGR +LD V+VE YGS V +NQVA+V++ + Sbjct: 2 IQDVKNTAEQKMQKSIEALKADLSKVRTGRAHTGLLDHVQVEYYGSMVAINQVASVSLGD 61 Query: 63 PRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 R L V ++K M VE+ I +++LGLNP G ++R+P+P TEERR LVKV + A Sbjct: 62 ARTLNVQAYEKNMTPKVEKAIRDADLGLNPATNGDIIRVPMPMLTEERRRDLVKVVRSEA 121 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 E +K+++RN+RRD D LKK K + SED ++++QK+TD + ID + K+ E Sbjct: 122 ENAKVAIRNVRRDANDALKKLVKDKEISEDDERRAQDEVQKLTDKFVAEIDKLLQTKEAE 181 Query: 183 IM 184 +M Sbjct: 182 LM 183 >gi|288941761|ref|YP_003444001.1| ribosome recycling factor [Allochromatium vinosum DSM 180] gi|288897133|gb|ADC62969.1| ribosome recycling factor [Allochromatium vinosum DSM 180] Length = 185 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 72/177 (40%), Positives = 113/177 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ +RM ++ L ++ +RTGR PS+LD + V YG VP+ QVAN+ + R L+ Sbjct: 7 QDAAERMAKSVESLTHELAKIRTGRAHPSLLDHIMVSYYGQDVPIRQVANINAEDARTLL 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+ W++ MV ++E+ I +S+LGLNP G +R+P+P TEERR L+KVA AE++++ Sbjct: 67 VTPWERNMVQAIEKAIMQSDLGLNPNTAGTAIRVPMPPLTEERRRDLIKVARNEAEQARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +VRNIRRD LK+ K SED + +QK+TD +K +D+ EK++++M Sbjct: 127 AVRNIRRDANHDLKELVKDKMISEDDERRGQEIVQKLTDQYVKEVDAVLAEKEQDLM 183 >gi|89900777|ref|YP_523248.1| ribosome recycling factor [Rhodoferax ferrireducens T118] gi|122479258|sp|Q21WY6|RRF_RHOFD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|89345514|gb|ABD69717.1| ribosome recycling factor [Rhodoferax ferrireducens T118] Length = 186 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 72/175 (41%), Positives = 114/175 (65%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 ++ +M +I K ++ +RTGR +P++LD V V+ YG+ +P++QVANV++L+ R + V Sbjct: 10 VEGKMDQSIEAFKHNLTKIRTGRANPALLDTVHVDYYGAMLPISQVANVSLLDARTISVQ 69 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 W+K M A +E+ I +S+LGLNP G ++R+P+P +EERR L KV E +KI++ Sbjct: 70 PWEKGMGAKIEKAIRDSDLGLNPSSMGDLIRVPMPAMSEERRKELSKVVRGEGEGAKIAI 129 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RN+RRD + ++K+ K ASED E DIQK+TD + ID K+++IM Sbjct: 130 RNLRRDANEAIRKAVKDKLASEDEQKRCETDIQKVTDRHVIVIDQLVAAKEQDIM 184 >gi|299141583|ref|ZP_07034719.1| ribosome recycling factor [Prevotella oris C735] gi|298576919|gb|EFI48789.1| ribosome recycling factor [Prevotella oris C735] Length = 186 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 75/178 (42%), Positives = 115/178 (64%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + ++RM +L ++ +R GR + ++LD VKV++YGS VPLNQVA V+ + R + Sbjct: 8 LSDAQERMEMAAMYLADELTHIRAGRANTAILDGVKVDSYGSKVPLNQVATVSTPDARTI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK+ + +E+ I +S++G+ P G+V+R+ +P+ TEERR LVK + E++K Sbjct: 68 AIRPWDKKAIKDIEKAIMDSDVGITPENNGEVIRLGIPQPTEERRKELVKQCNKIGERTK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 + VRN+R + D LKK+ K G SED+ END+QK+ D IK ID EK+KEIM Sbjct: 128 VEVRNVRGEVKDKLKKAIKDG-LSEDLEKDAENDLQKVHDKFIKKIDELLTEKQKEIM 184 >gi|229552426|ref|ZP_04441151.1| ribosome recycling factor [Lactobacillus rhamnosus LMS2-1] gi|258539797|ref|YP_003174296.1| ribosome recycling factor [Lactobacillus rhamnosus Lc 705] gi|229314163|gb|EEN80136.1| ribosome recycling factor [Lactobacillus rhamnosus LMS2-1] gi|257151473|emb|CAR90445.1| Ribosome-recycling factor [Lactobacillus rhamnosus Lc 705] Length = 185 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 74/184 (40%), Positives = 117/184 (63%), Gaps = 2/184 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 NQ+I+ + MG T L++++ +R GR + S+L+ + V+ YG+ PLNQ+A +TV Sbjct: 3 NQIIEQAKVN--MGKTEESLQRELGNIRAGRANASLLNQITVDYYGAPTPLNQMAAITVP 60 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 E R+L +S +DK + ++E I+ S+LG+NP +G V+R+ +P+ T ERR + K + Sbjct: 61 EARVLQISPYDKSSLKNIETAINASDLGINPANDGDVIRLVIPQLTGERRKEIAKEVGKF 120 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 +E +KI++RNIRR+G+D LK+ K G +ED + LE D+QK TD K ID K+K Sbjct: 121 SENAKIAIRNIRREGLDKLKRQEKDGDITEDELHRLEKDMQKATDDATKRIDEIAAAKEK 180 Query: 182 EIMH 185 EI Sbjct: 181 EITE 184 >gi|257094441|ref|YP_003168082.1| ribosome recycling factor [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046965|gb|ACV36153.1| ribosome recycling factor [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 186 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 77/182 (42%), Positives = 115/182 (63%), Gaps = 1/182 (0%) Query: 4 VIDLQNIKDR-MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLE 62 + DL+ +R M ++ L+ D+ +RTGR +LD V+VE YGS VP+N VANVT+++ Sbjct: 3 LADLKKTTERKMEKSLEALRTDLAKVRTGRAHTGLLDHVQVEYYGSLVPINTVANVTLID 62 Query: 63 PRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 R L V W+K M VE+ I + +LGLNP +G+++R+P+P TE RR L+KV A A Sbjct: 63 ARTLGVQPWEKGMAGKVEKAIRDCDLGLNPASQGELIRVPMPPLTEARRRDLIKVVRAEA 122 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 E +K++VRN+RRD LK+ K+ SED +++IQK+TD + ID K+ E Sbjct: 123 EGAKVAVRNLRRDANATLKEMLKNKACSEDEEHRAQDEIQKLTDRYVVEIDKQLSHKETE 182 Query: 183 IM 184 +M Sbjct: 183 LM 184 >gi|317406265|gb|EFV86509.1| frr protein [Achromobacter xylosoxidans C54] Length = 186 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 73/172 (42%), Positives = 113/172 (65%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM ++ LK ++ +RTGR +LD V+VE YGS VP++QV NV +++ R + V ++ Sbjct: 13 RMAKSLDTLKTNLAKIRTGRAHTGILDHVQVEYYGSPVPISQVGNVNLIDARTISVQPYE 72 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K M A++E+ I ES+LGLNP+ G +R+P+P TEERR L KV + E +K++VRN+ Sbjct: 73 KSMAAAIEKAIRESDLGLNPMSMGDSIRVPMPALTEERRRDLTKVVRSEGEDAKVAVRNL 132 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RR+ + LKK K + SED ++D+QK+TD ++ +ID +K+ EIM Sbjct: 133 RREANEGLKKLVKDKEISEDDERRAQDDVQKLTDRSVADIDKMVTQKEAEIM 184 >gi|237739392|ref|ZP_04569873.1| ribosome recycling factor [Fusobacterium sp. 2_1_31] gi|229423000|gb|EEO38047.1| ribosome recycling factor [Fusobacterium sp. 2_1_31] Length = 190 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 79/179 (44%), Positives = 115/179 (64%), Gaps = 2/179 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +D+M TI +K+ ++R GR + +MLD VKVE YGS VPLNQV +V+ E R+L Sbjct: 9 VKECEDKMLKTIESVKERFTSIRAGRANVAMLDAVKVENYGSEVPLNQVGSVSAPEARLL 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV WDK ++ +E+ + +NLG+ P +G+V+R+ +PE T +RR VK+A AE K Sbjct: 69 VVDPWDKTLIPKIEKALLAANLGMTPNNDGRVIRLVLPELTADRRKEYVKLAKNEAENGK 128 Query: 127 ISVRNIRRDGMDHLKK--SRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 I+VRNIR+D +HLKK K SED + E ++Q +TD IK ID +K+KEI Sbjct: 129 IAVRNIRKDINNHLKKLEKDKENPISEDELKKEEANVQTLTDKYIKEIDELLAKKEKEI 187 >gi|42520392|ref|NP_966307.1| ribosome recycling factor [Wolbachia endosymbiont of Drosophila melanogaster] gi|47116999|sp|P61311|RRF_WOLPM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|42410130|gb|AAS14241.1| ribosome recycling factor [Wolbachia endosymbiont of Drosophila melanogaster] Length = 185 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 76/175 (43%), Positives = 112/175 (64%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K+RM TI D+ +RTGR S S+LD + V YG H LNQVA V+V++ + L + V Sbjct: 10 KERMLKTIQSFHDDIKGVRTGRASASLLDGIVVNIYGGHQKLNQVAGVSVIDNKTLSIKV 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 WD +V V+ I +NL LNP+VEG +RI +P+ T+E R LVK+ H +AE ++I++R Sbjct: 70 WDISVVGEVKNAILNANLNLNPVVEGSTIRIALPDLTQETREKLVKLLHQFAENARIAIR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 NIRRD M+ +K +++ + SED + +IQ ITD IK ID K+K+I++ Sbjct: 130 NIRRDIMEETEKMKENKEISEDDFHGAKKEIQNITDDNIKKIDGELSIKEKDILN 184 >gi|332799211|ref|YP_004460710.1| Ribosome-recycling factor [Tepidanaerobacter sp. Re1] gi|332696946|gb|AEE91403.1| Ribosome-recycling factor [Tepidanaerobacter sp. Re1] Length = 185 Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 74/176 (42%), Positives = 120/176 (68%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 ++++M + + LK + T+R GR S ++LD + V+ YGS P+NQVA+V+V EP+M+++ Sbjct: 9 MENQMNEVLVNLKSEFTTIRAGRASAALLDKIYVDYYGSPTPVNQVASVSVPEPKMILIQ 68 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 WD +M+ +E+ I +S+LGL P +G+V+R+ +PE T ERR LVK++ AE++K+S+ Sbjct: 69 PWDLKMLGVIEKAILKSDLGLTPNNDGKVIRLILPELTAERRQELVKLSKKKAEEAKVSI 128 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 RNIRR+ D LKK K+ + SED + + +IQKITD I ++ K+K+IM Sbjct: 129 RNIRREYNDVLKKMEKNREISEDDLKRSQEEIQKITDKYIDEVEKILANKEKDIME 184 >gi|315641203|ref|ZP_07896280.1| ribosome recycling factor [Enterococcus italicus DSM 15952] gi|315482970|gb|EFU73489.1| ribosome recycling factor [Enterococcus italicus DSM 15952] Length = 185 Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 70/179 (39%), Positives = 118/179 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L IK +M T L++++ +R GR + S+LD + V YG+ P+NQ+A++T+ E R+L Sbjct: 6 LNEIKTKMEKTAENLQRELGQIRAGRANASLLDRISVVYYGAPTPINQLASITIPEARIL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK + +E+ I S++G+NP +G V+R+ +P+ TEERR LVK E +K Sbjct: 66 MITPFDKSTLKDIEKAILASDIGINPTSDGNVIRLVIPQLTEERRKELVKEVKKETESAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 I++RN RRDGMD KK +K+G +ED + + E IQ++TD++IK +D K++E++ Sbjct: 126 IAIRNARRDGMDSYKKQQKAGDITEDDLRTSEKTIQELTDASIKELDKIAASKEEELLE 184 >gi|253999117|ref|YP_003051180.1| ribosome recycling factor [Methylovorus sp. SIP3-4] gi|313201218|ref|YP_004039876.1| ribosome recycling factor [Methylovorus sp. MP688] gi|253985796|gb|ACT50653.1| ribosome recycling factor [Methylovorus sp. SIP3-4] gi|312440534|gb|ADQ84640.1| ribosome recycling factor [Methylovorus sp. MP688] Length = 185 Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 73/177 (41%), Positives = 113/177 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N + +M ++ LK D+ +RTGR +LD V VE YGS V +NQVANVT+ + R + Sbjct: 7 KNAEQKMQKSLESLKSDLGKVRTGRAHTGLLDHVMVEYYGSMVAVNQVANVTLGDARTIN 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V ++K MVA +E+ I + +LGLNP G V+R+P+P TEERR L+KV E +K+ Sbjct: 67 VQPYEKNMVAKIEKAIRDGDLGLNPATNGDVIRVPMPMLTEERRRDLIKVVRTEGENAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++RN+RRD D LKK K + SED +++++QK+TD + +D + K+ ++M Sbjct: 127 AIRNVRRDANDQLKKLTKDKEISEDDERRMQDEVQKLTDRFVAEVDKLLQVKEADLM 183 >gi|255283877|ref|ZP_05348432.1| ribosome recycling factor [Bryantella formatexigens DSM 14469] gi|255265598|gb|EET58803.1| ribosome recycling factor [Bryantella formatexigens DSM 14469] Length = 183 Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 77/173 (44%), Positives = 108/173 (62%), Gaps = 1/173 (0%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 ++M T + L + +R GR +P +LD + V+ YG+ P+ QV NV V E RM+ + W Sbjct: 10 EKMTKTYNNLLAEFGAIRAGRANPHVLDRIMVDYYGTPTPIQQVGNVNVPEARMIQIQPW 69 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 D M+ ++ + I S+LG+NP +G+V+R+ PE TEERR LVK E +K++VRN Sbjct: 70 DTSMLKAITKAIQTSDLGINPTNDGRVIRLVFPELTEERRKDLVKEVKKKGEGAKVAVRN 129 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 IRRD D KK K SED + LEN +QK+TD +K+IDS EEK KEIM Sbjct: 130 IRRDANDAFKKL-KGTDVSEDTIKELENAMQKLTDKYMKDIDSAVEEKSKEIM 181 >gi|301059177|ref|ZP_07200117.1| ribosome recycling factor [delta proteobacterium NaphS2] gi|300446725|gb|EFK10550.1| ribosome recycling factor [delta proteobacterium NaphS2] Length = 185 Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 69/180 (38%), Positives = 116/180 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++ +M + LKKD +RTGR S ++LD +KV+ Y + +P++QVA + E R++ Sbjct: 6 LAELRQKMNKAVEALKKDFRKIRTGRASTALLDGIKVDCYDTQMPIDQVATIAAPESRLI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WD+ ++ ++E+ I +S LGL P+ +G+++RI +P TEERR L K+A AE +K Sbjct: 66 TIQPWDQSIMGNLEKSILKSELGLTPMNDGKMIRISIPPLTEERRKELAKLARKMAEDNK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 IS+RN RR+ D K+ + + SED + ++D+QKITD I+ +D +K++EI+ F Sbjct: 126 ISIRNFRREANDMFKELKAEKEISEDELFKSQDDVQKITDEFIQKVDETTAKKEQEIIEF 185 >gi|225018404|ref|ZP_03707596.1| hypothetical protein CLOSTMETH_02351 [Clostridium methylpentosum DSM 5476] gi|224948822|gb|EEG30031.1| hypothetical protein CLOSTMETH_02351 [Clostridium methylpentosum DSM 5476] Length = 184 Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 74/180 (41%), Positives = 112/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ + +M T+ L+ + T+R GR +P++LD + V+ YG+ +NQ+A V+V E R+L Sbjct: 5 LEKSESKMHKTVERLEHEYTTIRAGRANPNVLDKILVDYYGTPTQINQMAAVSVSEARIL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+S WD + ++E+ I S+LG+NP +G+V+RI P+ TEERR +VK H E +K Sbjct: 65 VISPWDATSLKAIEKAIQASDLGINPTNDGKVIRIAFPQLTEERRKEIVKEVHKMREDAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD MD K +K G SED + E +Q + D K ID+ K+KEIM Sbjct: 125 VAVRNIRRDAMDKFKAIKKEGSVSEDEIKDGEKKLQNMVDKFCKEIDNVAAGKEKEIMEI 184 >gi|117622457|ref|YP_851370.1| ribosome recycling factor [Escherichia coli APEC O1] gi|309787154|ref|ZP_07681766.1| ribosome recycling factor [Shigella dysenteriae 1617] gi|115511581|gb|ABI99655.1| ribosome releasing factor [Escherichia coli APEC O1] gi|308924732|gb|EFP70227.1| ribosome recycling factor [Shigella dysenteriae 1617] gi|332097962|gb|EGJ02935.1| ribosome recycling factor [Shigella dysenteriae 155-74] Length = 173 Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 73/173 (42%), Positives = 111/173 (64%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M + K + +RTGR SPS+LD + VE YG+ PL Q+A+VTV + R L ++V+D+ Sbjct: 1 MDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDR 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 M +VE+ I S+LGLNP G +R+P+P TEERR L K+ AE+++++VRN+R Sbjct: 61 SMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RD D +K K + SED ++D+QK+TD+ IK I++ +K+ E+M F Sbjct: 121 RDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAALADKEAELMQF 173 >gi|154500382|ref|ZP_02038420.1| hypothetical protein BACCAP_04049 [Bacteroides capillosus ATCC 29799] gi|150270887|gb|EDM98170.1| hypothetical protein BACCAP_04049 [Bacteroides capillosus ATCC 29799] Length = 184 Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 69/172 (40%), Positives = 106/172 (61%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M T+ +K D ++R GR + ++LD + V+ YG PLNQV ++ +PR LV+ WD Sbjct: 11 KMQKTVDVVKSDFASVRAGRANAAVLDKITVDYYGVPTPLNQVGGISSPDPRSLVIQPWD 70 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 +++ +E+ I S+LG+NP +G+V+R+ P+ TEERR L K YAE K+++RNI Sbjct: 71 TKLLKDIEKAIQTSDLGINPQNDGRVIRLNFPQLTEERRKDLTKQVRKYAEAGKVAIRNI 130 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD MD K K + +ED LE ++Q +TD K ID E+K+ E+M Sbjct: 131 RRDAMDKFKAMEKKSEITEDDRKELEKELQDLTDKRCKQIDELTEKKEAELM 182 >gi|153954045|ref|YP_001394810.1| ribosome recycling factor [Clostridium kluyveri DSM 555] gi|219854658|ref|YP_002471780.1| hypothetical protein CKR_1315 [Clostridium kluyveri NBRC 12016] gi|189044051|sp|A5N831|RRF_CLOK5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|254809504|sp|B9E1J1|RRF_CLOK1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|146346926|gb|EDK33462.1| Frr [Clostridium kluyveri DSM 555] gi|219568382|dbj|BAH06366.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 185 Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 71/180 (39%), Positives = 115/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++M T+ L K++ +++ GR +P++LD ++VE YG+ P++Q+A +++ E R+L Sbjct: 6 LNKADEKMNKTVDVLVKELASMKAGRANPAILDKIEVEYYGAMTPISQLAGISIPEARIL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK + S+E+ I +S+LG+NP +G+++R+ +PE TEE R +VK E SK Sbjct: 66 AIQPWDKSALKSIEKAILKSDLGINPSNDGEIIRLIIPELTEETRKNIVKNIKKTGEDSK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++R IRR+ D K +K SED + E IQK TD IKNID+ E+K+KEIM Sbjct: 126 VAIRGIRRECNDKFKALKKKNDISEDEIKKGEEQIQKKTDIFIKNIDAILEKKEKEIMSL 185 >gi|310828069|ref|YP_003960426.1| ribosome recycling factor [Eubacterium limosum KIST612] gi|308739803|gb|ADO37463.1| ribosome recycling factor [Eubacterium limosum KIST612] Length = 185 Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 74/184 (40%), Positives = 118/184 (64%), Gaps = 2/184 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ D N D+M ++ L + + LR GR +P +LD V V+ YG+ +NQ+A+V V Sbjct: 2 LNEIKDRAN--DKMQKALNNLNESLGGLRAGRANPHILDKVTVDYYGAATAINQLASVAV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E RM+ + +D ++++E+ I ++LG NP +G+++R+ VPE TEERR LVK+ Sbjct: 60 PEARMITIQPYDSTSISAIEKAILTADLGFNPSNDGKIIRLIVPELTEERRKELVKLTKK 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 Y E+ K+++RNIRR + LK + K G SED + E +IQK+TD +KNI+ +EK+ Sbjct: 120 YGEECKVAMRNIRRKAVQDLKDAEKEGLISEDELHQGEKEIQKLTDDEVKNIEGVLKEKE 179 Query: 181 KEIM 184 EIM Sbjct: 180 AEIM 183 >gi|261378087|ref|ZP_05982660.1| ribosome recycling factor [Neisseria cinerea ATCC 14685] gi|269145536|gb|EEZ71954.1| ribosome recycling factor [Neisseria cinerea ATCC 14685] Length = 185 Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 76/182 (41%), Positives = 116/182 (63%), Gaps = 1/182 (0%) Query: 6 DLQNIKD-RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D+Q + +M ++ LK+++ +RTGR +LD V+VE +GS VP++QVANVT+L+ R Sbjct: 4 DIQKTAESKMQRSVEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVANVTLLDAR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 + V ++ M A VE+ I +SNLGLNP G ++R+P+P TEERR L+KV + AE+ Sbjct: 64 TIGVKPFESNMAAKVEKAIRDSNLGLNPAAVGDLIRVPMPMLTEERRKDLIKVVRSEAEE 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++S+RN+RRD DH+KK K + SED E +QK+TD I D K++++M Sbjct: 124 GRVSIRNVRRDANDHIKKLLKDKEISEDEARRGEEAVQKLTDKYITEADKLLTAKEEDLM 183 Query: 185 HF 186 Sbjct: 184 AI 185 >gi|171780175|ref|ZP_02921079.1| hypothetical protein STRINF_01963 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281523|gb|EDT46958.1| hypothetical protein STRINF_01963 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 185 Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 72/179 (40%), Positives = 114/179 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+R + S L ++ +R GR + S+LD ++VE YG+ PLNQ+A++TV E R+L Sbjct: 6 IEKAKERFEQSHSSLAREFAAIRAGRANASLLDRIQVEYYGAMTPLNQLASITVPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +DK + +E I+ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LISPFDKSSLKDIEHAINASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +++RNIRRD MD KK K+ + +ED + LE DIQK TD +K+ID+ K+KE++ Sbjct: 126 VAIRNIRRDAMDEAKKQEKAKEITEDELKVLEKDIQKATDEAVKHIDAMTANKEKELLE 184 >gi|325197474|gb|ADY92930.1| ribosome recycling factor [Neisseria meningitidis G2136] Length = 185 Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 76/182 (41%), Positives = 115/182 (63%), Gaps = 1/182 (0%) Query: 6 DLQNIKD-RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D+Q + +M ++ LK+++ +RTGR +LD V+VE +GS VP++QVANVT+L+ R Sbjct: 4 DIQKTAEGKMQRSVEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVANVTLLDAR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 + V ++ M A VE+ I +SNLGLNP G ++R+P+P TEERR L+KV AE+ Sbjct: 64 TIGVKPFESNMAAKVEKAIRDSNLGLNPAAVGDLIRVPMPMLTEERRKDLIKVVRGEAEE 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++S+RN+RRD DH+KK K + SED E +QK+TD I D K++++M Sbjct: 124 GRVSIRNVRRDANDHIKKLLKDKEISEDEARRGEEAVQKLTDKYITEADKLLTAKEEDLM 183 Query: 185 HF 186 Sbjct: 184 AI 185 >gi|306825442|ref|ZP_07458782.1| ribosome recycling factor [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432380|gb|EFM35356.1| ribosome recycling factor [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 185 Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 71/179 (39%), Positives = 114/179 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+RM + L ++ +R GR + S+LD + VE YG PLNQ+A++T+ E R+L Sbjct: 6 VEKAKERMTQSHQSLAREFGGIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + +ER ++ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +++RNIRRD MD KK K+ + +ED + +LE DIQK+TD +K+ID K+KE++ Sbjct: 126 VAIRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELLE 184 >gi|150009958|ref|YP_001304701.1| ribosome recycling factor [Parabacteroides distasonis ATCC 8503] gi|255012780|ref|ZP_05284906.1| ribosome recycling factor [Bacteroides sp. 2_1_7] gi|256838752|ref|ZP_05544262.1| ribosome recycling factor [Parabacteroides sp. D13] gi|262382735|ref|ZP_06075872.1| ribosome recycling factor [Bacteroides sp. 2_1_33B] gi|298374315|ref|ZP_06984273.1| ribosome recycling factor [Bacteroides sp. 3_1_19] gi|301307843|ref|ZP_07213799.1| ribosome recycling factor [Bacteroides sp. 20_3] gi|190360244|sp|A6LHB5|RRF_PARD8 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|149938382|gb|ABR45079.1| ribosome recycling factor [Parabacteroides distasonis ATCC 8503] gi|256739671|gb|EEU52995.1| ribosome recycling factor [Parabacteroides sp. D13] gi|262295613|gb|EEY83544.1| ribosome recycling factor [Bacteroides sp. 2_1_33B] gi|298268683|gb|EFI10338.1| ribosome recycling factor [Bacteroides sp. 3_1_19] gi|300834186|gb|EFK64800.1| ribosome recycling factor [Bacteroides sp. 20_3] Length = 187 Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 75/174 (43%), Positives = 112/174 (64%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 +++M I +L + + +R G+ +P +LD VKV YG+ VPL VA VTV + R ++++ Sbjct: 12 EEKMTFAIEYLDEQLSHIRAGKANPKILDCVKVMYYGAPVPLTNVATVTVPDARTIMITP 71 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 W+K+++ +E+GI +S LG+ P G+V+R+ +P TEERR LVK AE +KISVR Sbjct: 72 WEKKIIRDIEKGILDSELGITPENNGEVIRLGIPPLTEERRRQLVKQCKQEAENAKISVR 131 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 N RRD ++ LKKS KS ED+ E ++QKI D IK ID + K+KE+M Sbjct: 132 NARRDAIEALKKSIKSDGVPEDVEKDAEAEVQKIHDKFIKKIDELYAAKEKEVM 185 >gi|302525191|ref|ZP_07277533.1| ribosome recycling factor [Streptomyces sp. AA4] gi|302434086|gb|EFL05902.1| ribosome recycling factor [Streptomyces sp. AA4] Length = 185 Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 70/179 (39%), Positives = 116/179 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++M +S K+D+ ++RTGR PSM + VE YG+ PLNQ+A+V V E RM Sbjct: 6 LLDAEEKMEKAVSVAKEDLTSVRTGRAHPSMFSRIVVEYYGAPTPLNQLASVNVPEARMA 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D+ + ++E+ I ES+LG+NP +G V+RI +P+ TEERR +VKVA E ++ Sbjct: 66 LIKPYDQTQLNAIEKAIRESDLGVNPSNDGNVIRIVIPQLTEERRKEMVKVAKGKGEDAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +S+R+IRR + L + K G+A ED VA E ++Q +TD+ + +D + K+ E++ Sbjct: 126 VSIRSIRRKAKEELDRIAKDGEAGEDEVARAEKELQNLTDTYVHQVDELVKHKEAELLE 184 >gi|15902890|ref|NP_358440.1| ribosome recycling factor [Streptococcus pneumoniae R6] gi|116516857|ref|YP_816318.1| ribosome recycling factor [Streptococcus pneumoniae D39] gi|32171542|sp|Q8DQ49|RRF_STRR6 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|122278796|sp|Q04KY0|RRF_STRP2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|15458449|gb|AAK99650.1| Ribosome recycling factor [Streptococcus pneumoniae R6] gi|116077433|gb|ABJ55153.1| ribosome recycling factor [Streptococcus pneumoniae D39] Length = 185 Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 75/185 (40%), Positives = 117/185 (63%), Gaps = 1/185 (0%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M VI ++ K+RM + L ++ +R GR + S+LD V VE YG PLNQ+A++T+ Sbjct: 1 MANVI-IEKAKERMTQSHQSLAREFGGIRAGRANASLLDRVHVEYYGVETPLNQIASITI 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R+L+V+ +DK + ++R ++ S+LG+ P +G V+R+ +P TEE R L K Sbjct: 60 PEARVLLVTPFDKSSLKDIDRALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKK 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E +K++VRNIRRD MD KK K+ + +ED + +LE DIQK+TD +K+ID K+ Sbjct: 120 VGENAKVAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKE 179 Query: 181 KEIMH 185 KE++ Sbjct: 180 KELLE 184 >gi|225677380|ref|ZP_03788350.1| ribosome releasing factor [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590588|gb|EEH11845.1| ribosome releasing factor [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 185 Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 75/175 (42%), Positives = 112/175 (64%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K+RM TI D+ +RTGR S S+LD + V YG H LNQVA V+V++ + L + + Sbjct: 10 KERMLKTIQSFHDDIKGVRTGRASASLLDGIVVNIYGGHQKLNQVAGVSVIDNKTLSIKI 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 WD +V V+ I +NL LNP+VEG +RI +P+ T+E R LVK+ H +AE ++I++R Sbjct: 70 WDINVVGEVKNAILNANLNLNPVVEGNTIRIALPDLTQETREKLVKLLHQFAENARIAIR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 NIRRD M+ +K +++ + SED + +IQ ITD IK ID K+K+I++ Sbjct: 130 NIRRDIMEETEKMKENKEISEDDFHGAKKEIQNITDDNIKKIDGELSIKEKDILN 184 >gi|194468465|ref|ZP_03074451.1| ribosome recycling factor [Lactobacillus reuteri 100-23] gi|194453318|gb|EDX42216.1| ribosome recycling factor [Lactobacillus reuteri 100-23] Length = 187 Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 72/179 (40%), Positives = 117/179 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + K +M + L++ + +R G+ + S+L+ VKVE YG+ PLNQVA++T+ E R L Sbjct: 8 LNDAKQKMAKSGDALQRTLADIRAGQANASLLNSVKVEYYGAPTPLNQVASITIPEARQL 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +D+ ++ +E+ I+ SNLGL P +G +R+ +P+ TE+RR LVK A EK+K Sbjct: 68 LITPYDESVLEEIEKAIYASNLGLTPQNDGSSIRLIIPQLTEDRRKELVKDVKAELEKAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRN+RR+ MD LKK K+G ++D LE +Q TD+ IKN++ K+KE+M Sbjct: 128 VAVRNVRREAMDDLKKGNKNGDFNDDEFHDLEKKVQNETDAGIKNLEDIASAKEKELME 186 >gi|171059528|ref|YP_001791877.1| ribosome recycling factor [Leptothrix cholodnii SP-6] gi|238689083|sp|B1XXJ2|RRF_LEPCP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|170776973|gb|ACB35112.1| ribosome recycling factor [Leptothrix cholodnii SP-6] Length = 186 Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 75/177 (42%), Positives = 109/177 (61%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N + +M ++ K ++ +RTGR P +LD V V+ YGS++PL+QVANVT+++ R + Sbjct: 8 KNAEAKMAKSVEAFKNELQKIRTGRAHPGILDQVHVDYYGSNLPLSQVANVTLIDARTIS 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K M +E+ I ES+LGLNP G ++R+P+P TEERR L KV E SK+ Sbjct: 68 VQPWEKSMAQKIEKAIRESDLGLNPSSMGDLIRVPMPALTEERRKELTKVVRHAGEDSKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +VRN+RRD D KK K SED +++QK+TD I ID K+ EI+ Sbjct: 128 AVRNLRRDANDQAKKLLKDKLISEDDERRSVDEVQKLTDRVIAEIDRLVHGKEAEIL 184 >gi|257869600|ref|ZP_05649253.1| ribosome recycling factor [Enterococcus gallinarum EG2] gi|257803764|gb|EEV32586.1| ribosome recycling factor [Enterococcus gallinarum EG2] Length = 185 Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 74/180 (41%), Positives = 115/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L KD+M L++++ +R GR + S+LD V V YG PLNQ+A++T+ E R+L Sbjct: 6 LTEAKDKMKKAAENLQRELGQIRAGRANASILDRVMVTYYGVPTPLNQMASITIPEARIL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK M+ VE+ I +S++G+ P +G V+R+ +P+ TEERR L K AE +K Sbjct: 66 MITPFDKTMIQEVEKAIMQSDIGITPANDGTVIRLVIPQLTEERRKELAKDVKKEAENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I+VRNIRRD MD KK KSG + D + E ++Q +TD++IK ID EK++E++ Sbjct: 126 IAVRNIRRDAMDAYKKQEKSGDITVDDLRESEKEVQTLTDNSIKEIDQIAAEKEQELLEV 185 >gi|260588561|ref|ZP_05854474.1| ribosome recycling factor [Blautia hansenii DSM 20583] gi|331082136|ref|ZP_08331264.1| ribosome recycling factor [Lachnospiraceae bacterium 6_1_63FAA] gi|260541036|gb|EEX21605.1| ribosome recycling factor [Blautia hansenii DSM 20583] gi|330405731|gb|EGG85261.1| ribosome recycling factor [Lachnospiraceae bacterium 6_1_63FAA] Length = 185 Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 76/178 (42%), Positives = 112/178 (62%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q + +M T+ L K+++T+R GR +P +LD + V+ YG+ PL QVAN+TV E RM+ Sbjct: 7 IQVYEHKMTKTLEGLTKELVTIRAGRANPHILDKLTVDYYGTPTPLQQVANITVPEARMI 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + W+ ++ + + I S+L LNP +G+++R+ +PE TEERR LVK E +K Sbjct: 67 QIQPWEASLIKEISKAILSSDLNLNPNSDGKIIRLVLPELTEERRKELVKDVKKKGEAAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++VRN+RRD D KK K SED + LE IQKITD +K I+ EEK KEI+ Sbjct: 127 VAVRNVRRDANDAFKKLAKQD-VSEDEIKELEEQIQKITDKFVKEIEKAVEEKSKEIL 183 >gi|319793980|ref|YP_004155620.1| ribosome recycling factor [Variovorax paradoxus EPS] gi|315596443|gb|ADU37509.1| ribosome recycling factor [Variovorax paradoxus EPS] Length = 186 Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 75/182 (41%), Positives = 115/182 (63%), Gaps = 1/182 (0%) Query: 4 VIDLQNIKD-RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLE 62 + D+++ D +M +++ + ++ +RTGR + ++LD + VE YGS VPL+QVANV+VL+ Sbjct: 3 IADIRSATDAKMNQSLAAFQNNLTKIRTGRANSALLDSIHVEYYGSQVPLSQVANVSVLD 62 Query: 63 PRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 R + V W+K M A +E+ I ES+LGLNP G ++R+P+P +EERR + K+ Sbjct: 63 SRTISVQPWEKGMGAKIEKAIRESDLGLNPASMGDLIRVPLPAMSEERRKEMTKLVRNEG 122 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 E +K++ RN+RRD + +KK K ASED E +IQK+TD I ID K+ E Sbjct: 123 ETAKVATRNLRRDANESVKKLVKDKLASEDDQKRAEAEIQKVTDRHIAEIDRLVAAKEAE 182 Query: 183 IM 184 IM Sbjct: 183 IM 184 >gi|326204054|ref|ZP_08193915.1| ribosome recycling factor [Clostridium papyrosolvens DSM 2782] gi|325985821|gb|EGD46656.1| ribosome recycling factor [Clostridium papyrosolvens DSM 2782] Length = 185 Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 68/176 (38%), Positives = 118/176 (67%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 I+++M TI+ LK ++ +R GR +P++LD + ++ YG+ P+ Q+A V+V E R++++ Sbjct: 9 IEEKMKKTINVLKDNLAGIRAGRANPAILDKLTIDYYGAATPIQQIATVSVPEARVILIQ 68 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 W+ +++ +E+ I +S++G+NP +G+V+R+ P TEERR L K A E+SK+++ Sbjct: 69 PWEAKLLKDIEKEIQKSDIGINPNNDGKVIRLVFPALTEERRKELTKQAKKEGEESKVAI 128 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 R+IRRD ++ +K +K+G+ +ED + E DIQ +TD I +ID E K KEIM Sbjct: 129 RSIRRDSIEGMKSKKKNGEITEDDLKDAEKDIQNLTDRYIADIDKIIEAKDKEIME 184 >gi|281425442|ref|ZP_06256355.1| ribosome recycling factor [Prevotella oris F0302] gi|281400435|gb|EFB31266.1| ribosome recycling factor [Prevotella oris F0302] Length = 186 Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 75/178 (42%), Positives = 115/178 (64%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + ++RM +L ++ +R GR + ++LD VKV++YGS VPLNQVA V+ + R + Sbjct: 8 LSDAQERMEMAAMYLADELTHIRAGRANTAILDGVKVDSYGSKVPLNQVATVSTPDARTI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK+ + +E+ I +S++G+ P G+V+R+ +P+ TEERR LVK + E++K Sbjct: 68 AIRPWDKKAIKDIEKAIMDSDVGITPENNGEVIRLGIPQPTEERRKELVKQCNKIGERTK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 + VRN+R + D LKK+ K G SED+ END+QK+ D IK ID EK+KEIM Sbjct: 128 VEVRNVRGEVKDKLKKAIKEG-LSEDLEKDAENDLQKVHDKFIKRIDELLTEKQKEIM 184 >gi|15900824|ref|NP_345428.1| ribosome recycling factor [Streptococcus pneumoniae TIGR4] gi|111658056|ref|ZP_01408758.1| hypothetical protein SpneT_02000789 [Streptococcus pneumoniae TIGR4] gi|182683889|ref|YP_001835636.1| ribosome releasing factor [Streptococcus pneumoniae CGSP14] gi|303254412|ref|ZP_07340518.1| ribosome recycling factor [Streptococcus pneumoniae BS455] gi|303259855|ref|ZP_07345830.1| ribosome releasing factor [Streptococcus pneumoniae SP-BS293] gi|303262269|ref|ZP_07348213.1| ribosome releasing factor [Streptococcus pneumoniae SP14-BS292] gi|303264691|ref|ZP_07350609.1| ribosome releasing factor [Streptococcus pneumoniae BS397] gi|303267220|ref|ZP_07353085.1| ribosome releasing factor [Streptococcus pneumoniae BS457] gi|303269506|ref|ZP_07355271.1| ribosome releasing factor [Streptococcus pneumoniae BS458] gi|22001947|sp|Q97R82|RRF_STRPN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238691154|sp|B2IPA0|RRF_STRPS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|14972420|gb|AAK75068.1| ribosome recycling factor [Streptococcus pneumoniae TIGR4] gi|182629223|gb|ACB90171.1| ribosome releasing factor [Streptococcus pneumoniae CGSP14] gi|302598579|gb|EFL65619.1| ribosome recycling factor [Streptococcus pneumoniae BS455] gi|302636592|gb|EFL67083.1| ribosome releasing factor [Streptococcus pneumoniae SP14-BS292] gi|302639060|gb|EFL69520.1| ribosome releasing factor [Streptococcus pneumoniae SP-BS293] gi|302640942|gb|EFL71324.1| ribosome releasing factor [Streptococcus pneumoniae BS458] gi|302643229|gb|EFL73511.1| ribosome releasing factor [Streptococcus pneumoniae BS457] gi|302645778|gb|EFL76007.1| ribosome releasing factor [Streptococcus pneumoniae BS397] Length = 185 Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 72/179 (40%), Positives = 114/179 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+RM + L ++ +R GR + S+LD V VE YG PLNQ+A++T+ E R+L Sbjct: 6 IEKAKERMTQSHQSLAREFGGIRAGRANASLLDRVHVEYYGVETPLNQIASITIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + +ER ++ S++G+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LVTPFDKSSLKDIERALNASDIGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRNIRRD MD KK K+ + +ED + +LE DIQK+TD +K+ID K+KE++ Sbjct: 126 VAVRNIRRDAMDEAKKREKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELLE 184 >gi|227544958|ref|ZP_03975007.1| ribosome recycling factor [Lactobacillus reuteri CF48-3A] gi|300910011|ref|ZP_07127471.1| ribosome recycling factor [Lactobacillus reuteri SD2112] gi|227185069|gb|EEI65140.1| ribosome recycling factor [Lactobacillus reuteri CF48-3A] gi|300892659|gb|EFK86019.1| ribosome recycling factor [Lactobacillus reuteri SD2112] Length = 187 Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 72/179 (40%), Positives = 117/179 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + K +M + L++ + +R G+ + S+L+ VKVE YG+ PLNQVA++T+ E R L Sbjct: 8 LNDAKQKMAKSGDALQRTLADIRAGQANASLLNSVKVEYYGAPTPLNQVASITIPEARQL 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +D+ ++ +E+ I+ SNLGL P +G +R+ +P+ TE+RR LVK A EK+K Sbjct: 68 LITPYDESVLEEIEKAIYASNLGLTPQNDGSSIRLIIPQLTEDRRKELVKDVKAELEKAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRN+RR+ MD LKK K+G ++D LE +Q TD+ IKN++ K+KE+M Sbjct: 128 VAVRNVRREAMDDLKKGNKNGDFNDDEFHDLEKKVQNETDAGIKNLEDIANTKEKELME 186 >gi|257867709|ref|ZP_05647362.1| ribosome recycling factor [Enterococcus casseliflavus EC30] gi|257874036|ref|ZP_05653689.1| ribosome recycling factor [Enterococcus casseliflavus EC10] gi|257876615|ref|ZP_05656268.1| ribosome recycling factor [Enterococcus casseliflavus EC20] gi|325571087|ref|ZP_08146659.1| ribosome recycling factor [Enterococcus casseliflavus ATCC 12755] gi|257801792|gb|EEV30695.1| ribosome recycling factor [Enterococcus casseliflavus EC30] gi|257808200|gb|EEV37022.1| ribosome recycling factor [Enterococcus casseliflavus EC10] gi|257810781|gb|EEV39601.1| ribosome recycling factor [Enterococcus casseliflavus EC20] gi|325156172|gb|EGC68358.1| ribosome recycling factor [Enterococcus casseliflavus ATCC 12755] Length = 185 Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 73/180 (40%), Positives = 116/180 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L KD+M L++++ +R GR + S+LD V V YG PLNQ+A++T+ E R+L Sbjct: 6 LTEAKDKMKKAAENLQRELGQIRAGRANASILDRVMVTYYGVPTPLNQMASITIPEARIL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK M+ VE+ I +S++G+ P +G V+R+ +P+ TEERR L K AE +K Sbjct: 66 MITPFDKTMIQEVEKAIMQSDIGITPANDGTVIRLVIPQLTEERRKELAKDVKKEAENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I+VRNIRRD M+ KK K+G +ED + E ++Q TD++IK ID+ EK++E++ Sbjct: 126 IAVRNIRRDAMEAYKKQEKAGDITEDDLRESEKEVQTATDNSIKEIDAIAAEKEQELLEV 185 >gi|227833383|ref|YP_002835090.1| Ribosome recycling factor [Corynebacterium aurimucosum ATCC 700975] gi|262184370|ref|ZP_06043791.1| ribosome recycling factor [Corynebacterium aurimucosum ATCC 700975] gi|254809506|sp|C3PH48|RRF_CORA7 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|227454399|gb|ACP33152.1| Ribosome recycling factor [Corynebacterium aurimucosum ATCC 700975] Length = 185 Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 68/175 (38%), Positives = 115/175 (65%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 ++ M ++ ++ ++T+RTGR +P+M + + E YG P+ Q+A ++V EPRML++ Sbjct: 10 EEHMTASVEHTREQLLTIRTGRANPAMFNGLVAEYYGVPTPITQMATISVPEPRMLLIKP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +++ ++ +E I S+LG+NP +GQVLR+ +P+ TEERR +VK+A + E KI++R Sbjct: 70 YEQSVMNEIENAIRNSDLGVNPTNDGQVLRVTIPQLTEERRRDMVKMAKSKGEDGKIAIR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 NIRR M+ LKK +K G A ED V + E +++KIT I+ +D K++E+M Sbjct: 130 NIRRRAMEQLKKLQKDGDAGEDEVIAAEKEMEKITSGYIEQVDKLVANKEEELME 184 >gi|259503115|ref|ZP_05746017.1| ribosome recycling factor [Lactobacillus antri DSM 16041] gi|259168981|gb|EEW53476.1| ribosome recycling factor [Lactobacillus antri DSM 16041] Length = 186 Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 72/179 (40%), Positives = 117/179 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + K +M + L++ + +R G+ + S+L+ VKVE YG+ PLNQVA++T+ E R L Sbjct: 8 LNDAKQKMKKSGEALQRSLADIRAGQANASLLNSVKVEYYGAPTPLNQVASITIPEARQL 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +D+ ++ +E+ I+ SNLGL P +G +R+ +P+ TE+RR LVK A EK+K Sbjct: 68 LVTPYDESILEEIEKAIYASNLGLTPQNDGSAIRLIIPQLTEDRRKELVKDVKAELEKAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRN+RR+ MD LKK K+G ++D LE +Q TD+ IKN++ K+KE++ Sbjct: 128 VAVRNVRREAMDDLKKGNKNGDFNDDEFHDLEKQVQNETDAGIKNLEEIAGAKEKELLQ 186 >gi|239626444|ref|ZP_04669475.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239516590|gb|EEQ56456.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 183 Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 73/179 (40%), Positives = 111/179 (62%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 +L+ +D+M T+ L D T+R GR +P +LD +KV+ YG+ PL QV NV+V E RM Sbjct: 3 ELKIYEDKMNKTLDVLLSDFGTIRAGRANPHVLDKLKVDYYGTPTPLQQVGNVSVPEARM 62 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 +V+ W+K ++ +E+ I S LG+NP +G +R+ PE TE+RR + K E + Sbjct: 63 IVIQPWEKSLLKPIEKAILTSELGINPTNDGNCIRLVFPEMTEDRRKEVSKDVKKKGEGA 122 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 K+++RNIRRD + KK+ K+G SED + +QK+TD ++ +D EEK KEIM Sbjct: 123 KVALRNIRRDANEAFKKAEKAGDMSEDDLKEATEKMQKLTDKMVEKVDKAVEEKTKEIM 181 >gi|188586056|ref|YP_001917601.1| ribosome recycling factor [Natranaerobius thermophilus JW/NM-WN-LF] gi|229564261|sp|B2A383|RRF_NATTJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|179350743|gb|ACB85013.1| ribosome recycling factor [Natranaerobius thermophilus JW/NM-WN-LF] Length = 184 Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 78/180 (43%), Positives = 116/180 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ + +M +S LK ++ +LR GR +PS+L+ + V+ YG PLNQ+AN++ EPR+L Sbjct: 5 FKDAEQKMKKALSSLKSELASLRAGRANPSILEGINVDYYGMATPLNQLANISAPEPRLL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV +DK + +E+ I +S++GL P +GQV+R+ VP+ TEERR LVK+ E +K Sbjct: 65 VVQPYDKSAIEDIEKAILKSDVGLTPNNDGQVIRLAVPQLTEERRNELVKIVRQKGEDTK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 + VRN+RRD D LKK K + SED +++IQKITD IK ID K++EI F Sbjct: 125 VVVRNVRRDANDELKKLEKEKEISEDESIRGQDEIQKITDKYIKKIDEVMNAKEEEITSF 184 >gi|74316806|ref|YP_314546.1| ribosome recycling factor [Thiobacillus denitrificans ATCC 25259] gi|123612166|sp|Q3SKN6|RRF_THIDA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|74056301|gb|AAZ96741.1| ribosome recycling factor [Thiobacillus denitrificans ATCC 25259] Length = 189 Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 74/177 (41%), Positives = 113/177 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ + +MG T+ LK D+ +RTGR +LD V V+ YG+ P+ QVANV++++ R L Sbjct: 11 QSAEQKMGKTLEALKNDLAKVRTGRAHAGILDHVLVDYYGNPTPVPQVANVSLVDSRTLG 70 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V ++K MV +E+ I + +LGLNP G V+R+P+P TEERR L+KV AE +++ Sbjct: 71 VQPYEKNMVGKIEKAIRDGDLGLNPATHGDVIRVPMPALTEERRRDLIKVVRNEAEGARV 130 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +VRNIRRD LK K+ A+ED ++++QK+TD I ID EK+K+++ Sbjct: 131 AVRNIRRDANASLKDMVKAKTATEDEERRTQDEVQKLTDKFIGEIDKMLAEKEKDLL 187 >gi|15676114|ref|NP_273245.1| ribosome recycling factor [Neisseria meningitidis MC58] gi|121634062|ref|YP_974307.1| ribosome recycling factor [Neisseria meningitidis FAM18] gi|218767120|ref|YP_002341632.1| ribosome recycling factor [Neisseria meningitidis Z2491] gi|296313408|ref|ZP_06863349.1| ribosome recycling factor [Neisseria polysaccharea ATCC 43768] gi|54039296|sp|P66737|RRF_NEIMB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|54042004|sp|P66736|RRF_NEIMA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166230807|sp|A1KRL9|RRF_NEIMF RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|7225406|gb|AAF40644.1| ribosome recycling factor [Neisseria meningitidis MC58] gi|120865768|emb|CAM09497.1| ribosome recycling factor [Neisseria meningitidis FAM18] gi|121051128|emb|CAM07399.1| ribosome recycling factor [Neisseria meningitidis Z2491] gi|261391723|emb|CAX49172.1| ribosome recycling factor (ribosome-releasing factor; RRF) [Neisseria meningitidis 8013] gi|296840119|gb|EFH24057.1| ribosome recycling factor [Neisseria polysaccharea ATCC 43768] gi|319411327|emb|CBY91738.1| ribosome recycling factor (ribosome-releasing factor; RRF) [Neisseria meningitidis WUE 2594] gi|325129106|gb|EGC51955.1| ribosome recycling factor [Neisseria meningitidis N1568] gi|325133101|gb|EGC55773.1| ribosome recycling factor [Neisseria meningitidis M6190] gi|325139079|gb|EGC61625.1| ribosome recycling factor [Neisseria meningitidis ES14902] gi|325141201|gb|EGC63701.1| ribosome recycling factor [Neisseria meningitidis CU385] gi|325145384|gb|EGC67661.1| ribosome recycling factor [Neisseria meningitidis M01-240013] gi|325199400|gb|ADY94855.1| ribosome recycling factor [Neisseria meningitidis H44/76] gi|325202978|gb|ADY98432.1| ribosome recycling factor [Neisseria meningitidis M01-240149] gi|325203308|gb|ADY98761.1| ribosome recycling factor [Neisseria meningitidis M01-240355] gi|325205280|gb|ADZ00733.1| ribosome recycling factor [Neisseria meningitidis M04-240196] Length = 185 Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 76/182 (41%), Positives = 115/182 (63%), Gaps = 1/182 (0%) Query: 6 DLQNIKD-RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D+Q + +M ++ LK+++ +RTGR +LD V+VE +GS VP++QVANVT+L+ R Sbjct: 4 DIQKTAEGKMQRSVEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVANVTLLDAR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 + V ++ M A VE+ I +SNLGLNP G ++R+P+P TEERR L+KV AE+ Sbjct: 64 TIGVKPFEGNMAAKVEKAIRDSNLGLNPAAVGDLIRVPMPMLTEERRKDLIKVVRGEAEE 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++S+RN+RRD DH+KK K + SED E +QK+TD I D K++++M Sbjct: 124 GRVSIRNVRRDANDHIKKLLKDKEISEDEARRGEEAVQKLTDKYITEADKLLTAKEEDLM 183 Query: 185 HF 186 Sbjct: 184 AI 185 >gi|163856844|ref|YP_001631142.1| ribosome recycling factor [Bordetella petrii DSM 12804] gi|229564222|sp|A9INV3|RRF_BORPD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|163260572|emb|CAP42874.1| frr [Bordetella petrii] Length = 186 Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 76/172 (44%), Positives = 111/172 (64%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM ++ LK ++ +RTGR +LD V+VE YGS VP++QVANV +++ R + V ++ Sbjct: 13 RMAKSLDTLKVNLSKIRTGRAHTGILDHVQVEYYGSPVPVSQVANVNLVDARTISVQPYE 72 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K M A++E+ I ES+LGLNP+ G +R+P+P TEERR L KV E +KI+VRN+ Sbjct: 73 KPMAAAIEKAIRESDLGLNPMSLGDSIRVPMPALTEERRRDLTKVVKGEGEDAKIAVRNL 132 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RR+ + LKK K + SED ++DIQK+TD + ID +K+ EIM Sbjct: 133 RREANESLKKLVKDKEISEDDERRAQDDIQKLTDRNVTEIDKLITQKEAEIM 184 >gi|269837765|ref|YP_003319993.1| ribosome recycling factor [Sphaerobacter thermophilus DSM 20745] gi|269787028|gb|ACZ39171.1| ribosome recycling factor [Sphaerobacter thermophilus DSM 20745] Length = 185 Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 69/180 (38%), Positives = 115/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + + RM T+ L++++ +RTGR SP +++ ++V+ YG+ PLNQVA ++ EPR+L Sbjct: 6 LADAEGRMTKTLDNLQRELAGIRTGRASPGLIERLEVDYYGTPTPLNQVAGISAPEPRLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV WD+ ++++E+ I S+LGLNP +GQV+RI +P TEERR ALV+V E+S+ Sbjct: 66 VVQPWDRSAMSAIEKAIRSSDLGLNPTNDGQVIRIAIPPLTEERRKALVRVVRQKVEESR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD + +K+ + ED E +Q++T+ I D + K+ E++ Sbjct: 126 VAIRNIRRDALAQVKEMLQEKLIGEDDERRAEQQVQELTNRYINEADKIGKNKEAEVLEV 185 >gi|227524388|ref|ZP_03954437.1| ribosome recycling factor [Lactobacillus hilgardii ATCC 8290] gi|227088619|gb|EEI23931.1| ribosome recycling factor [Lactobacillus hilgardii ATCC 8290] Length = 187 Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 67/179 (37%), Positives = 121/179 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K +M L+ ++ ++R GR + S+L V V+ YG+ PLNQ+A++++ E R++ Sbjct: 8 LNEAKTKMKKAQEVLEHELGSIRAGRANASLLSGVTVDYYGAPTPLNQIASISIPEARVI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK + ++E+GI+E++LGL+P +G +R+ +P TEERR + K A EKSK Sbjct: 68 LITPYDKSSLDNIEKGIYEADLGLSPANDGTAIRLAIPALTEERRREVAKQVKATGEKSK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRN+RR+ MD K+ KS + ++D + LE+ +QK+TD++IK++D +K+ E+M+ Sbjct: 128 VAVRNVRREAMDTFKRGNKSEEITDDELHRLEDQVQKLTDNSIKSVDKIVADKENEVMN 186 >gi|239815583|ref|YP_002944493.1| ribosome recycling factor [Variovorax paradoxus S110] gi|239802160|gb|ACS19227.1| ribosome recycling factor [Variovorax paradoxus S110] Length = 189 Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 74/172 (43%), Positives = 109/172 (63%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M +++ + ++ +RTGR + ++LD + VE YGS VPL+QVANV+VL+ R + V W+ Sbjct: 16 KMNQSLAAFQNNLTKIRTGRANSALLDSIHVEYYGSQVPLSQVANVSVLDSRTISVQPWE 75 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K M A +E+ I ES+LGLNP G ++R+P+P +EERR + K+ E +KI+ RN+ Sbjct: 76 KGMGAKIEKAIRESDLGLNPASMGDLIRVPLPAMSEERRKEMTKLVRNEGESAKIATRNL 135 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD + +KK K ASED E +IQK+TD I ID K+ EIM Sbjct: 136 RRDANESVKKLVKEKLASEDDQKRAEAEIQKVTDRHIAEIDRLVAAKEAEIM 187 >gi|322385103|ref|ZP_08058750.1| ribosome recycling factor [Streptococcus cristatus ATCC 51100] gi|321270727|gb|EFX53640.1| ribosome recycling factor [Streptococcus cristatus ATCC 51100] Length = 185 Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 72/178 (40%), Positives = 114/178 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+RM + L ++ ++R GR + S+LD + VE YG PLNQ++++T+ E R+L Sbjct: 6 VEKAKERMTHSHQSLAREFGSIRAGRANASLLDRIHVEYYGVETPLNQLSSITIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + +ER I+ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LVTPFDKSSIKDIERAINASDLGITPSSDGSVIRLVIPALTEETRRELAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 I++RNIRRD MD KK K+ + +ED + LE DIQK+TD +K+ID K+KE++ Sbjct: 126 IAIRNIRRDAMDEAKKQEKAKEITEDELKVLEKDIQKVTDDAVKHIDDMTATKEKELL 183 >gi|315038582|ref|YP_004032150.1| ribosome recycling factor [Lactobacillus amylovorus GRL 1112] gi|312276715|gb|ADQ59355.1| ribosome recycling factor [Lactobacillus amylovorus GRL 1112] Length = 185 Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 69/179 (38%), Positives = 116/179 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ ++ M +I +K + ++R G + ++LD V+VE YG+ PL Q++++T+ EPR+L Sbjct: 6 IKKAQENMDKSIKVYQKKLASIRAGVANAALLDNVQVEYYGAPTPLTQMSSITIPEPRVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +D+ + +E + SNLGL P +G+V+R+ +P+ T ERR + K YAE++K Sbjct: 66 LITPYDQNSLDDIEHALLASNLGLTPANDGKVIRLVIPQLTGERREEIAKEVGKYAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 I+VRN+RRD M+ LK+ K G +ED +LE +QK+TD K ID +EK+KEI Sbjct: 126 IAVRNVRRDAMNSLKREEKDGDITEDEQRNLEKQVQKVTDGAAKKIDQLADEKRKEITQ 184 >gi|325135114|gb|EGC57741.1| ribosome recycling factor [Neisseria meningitidis M13399] gi|325137020|gb|EGC59616.1| ribosome recycling factor [Neisseria meningitidis M0579] Length = 185 Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 76/182 (41%), Positives = 115/182 (63%), Gaps = 1/182 (0%) Query: 6 DLQNIKD-RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D+Q + +M ++ LK+++ +RTGR +LD V+VE +GS VP++QVANVT+L+ R Sbjct: 4 DIQKTAEGKMQRSVEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVANVTLLDAR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 + V ++ M A VE+ I +SNLGLNP G ++R+P+P TEERR L+KV AE+ Sbjct: 64 TIGVKPFEGNMAAKVEKAIRDSNLGLNPAAVGDLIRVPMPMLTEERRKDLIKVVRGEAEE 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++S+RN+RRD DH+KK K + SED E +QK+TD I D K++++M Sbjct: 124 GRVSIRNVRRDANDHIKKLLKDKEISEDEARRGEEAVQKLTDKYITEADKLLTTKEEDLM 183 Query: 185 HF 186 Sbjct: 184 AI 185 >gi|227510244|ref|ZP_03940293.1| ribosome recycling factor [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227513173|ref|ZP_03943222.1| ribosome recycling factor [Lactobacillus buchneri ATCC 11577] gi|227083554|gb|EEI18866.1| ribosome recycling factor [Lactobacillus buchneri ATCC 11577] gi|227189896|gb|EEI69963.1| ribosome recycling factor [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 187 Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 67/179 (37%), Positives = 121/179 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K +M L+ ++ ++R GR + S+L V V+ YG+ PLNQ+A++++ E R++ Sbjct: 8 LNEAKTKMKKAQEVLEHELGSIRAGRANASLLSGVTVDYYGAPTPLNQIASISIPEARVI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK + ++E+GI+E++LGL+P +G +R+ +P TEERR + K A EKSK Sbjct: 68 LITPYDKSSLDNIEKGIYEADLGLSPANDGTAIRLAIPALTEERRKEVAKQVKATGEKSK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRN+RR+ MD K+ KS + ++D + LE+ +QK+TD++IK++D +K+ E+M+ Sbjct: 128 VAVRNVRREAMDTFKRGNKSEEITDDELHRLEDQVQKLTDNSIKSVDKIVADKENEVMN 186 >gi|21674395|ref|NP_662460.1| ribosome recycling factor [Chlorobium tepidum TLS] gi|25453262|sp|Q8KC49|RRF_CHLTE RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|21647576|gb|AAM72802.1| ribosome recycling factor [Chlorobium tepidum TLS] Length = 186 Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 77/178 (43%), Positives = 108/178 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q I+ RM TI + ++ ++RTG+ + ++LD VKVEAYGS +PL QV NV VL+ L Sbjct: 7 IQKIEPRMKKTIEAFQHELASIRTGKATTALLDRVKVEAYGSQMPLKQVGNVGVLDAHTL 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V VWDK MV + ER I ++ LGLNP +GQ +RI +P TEERR VK+ + E SK Sbjct: 67 TVQVWDKSMVGATERAIRDAGLGLNPSADGQNIRISIPPLTEERRKEFVKLTKKFGEDSK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +S+RN RRD + ++K K SED + + D + K I +K+KEIM Sbjct: 127 VSLRNHRRDLIHEVEKLEKEKLISEDELKRGKKDADDLLHKYEKQITELIAQKEKEIM 184 >gi|311105986|ref|YP_003978839.1| ribosome recycling factor [Achromobacter xylosoxidans A8] gi|310760675|gb|ADP16124.1| ribosome recycling factor [Achromobacter xylosoxidans A8] Length = 186 Score = 147 bits (372), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 73/172 (42%), Positives = 112/172 (65%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM ++ LK ++ +RTGR +LD V+VE YGS VP++QV NV +++ R + V ++ Sbjct: 13 RMAKSLDTLKTNLAKIRTGRAHTGILDHVQVEYYGSPVPISQVGNVNLVDARTISVQPYE 72 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K M A++E+ I ES+LGLNP+ G +R+P+P TEERR L KV + E +K++VRN+ Sbjct: 73 KSMAAAIEKAIRESDLGLNPMSMGDTIRVPMPALTEERRRDLTKVVRSEGEDAKVAVRNL 132 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RR+ + LKK K + SED ++D+QK+TD ++ ID +K+ EIM Sbjct: 133 RREANEALKKLVKDKEISEDDERRSQDDVQKLTDRSVAEIDKMVTQKEAEIM 184 >gi|293365195|ref|ZP_06611912.1| ribosome recycling factor [Streptococcus oralis ATCC 35037] gi|307703733|ref|ZP_07640674.1| ribosome recycling factor [Streptococcus oralis ATCC 35037] gi|291316645|gb|EFE57081.1| ribosome recycling factor [Streptococcus oralis ATCC 35037] gi|307622568|gb|EFO01564.1| ribosome recycling factor [Streptococcus oralis ATCC 35037] Length = 185 Score = 147 bits (372), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 71/179 (39%), Positives = 114/179 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+RM + L ++ +R GR + S+LD + VE YG PLNQ+A++T+ E R+L Sbjct: 6 VEKAKERMTQSHQSLAREFGGIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +D+ + +ER ++ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LVTPFDRSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRNIRRD MD KK K+ + +ED + +LE DIQK+TD +K+ID K+KE++ Sbjct: 126 VAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELLE 184 >gi|148543919|ref|YP_001271289.1| ribosome recycling factor [Lactobacillus reuteri DSM 20016] gi|184153315|ref|YP_001841656.1| ribosome recycling factor [Lactobacillus reuteri JCM 1112] gi|227364829|ref|ZP_03848877.1| ribosome recycling factor [Lactobacillus reuteri MM2-3] gi|325682546|ref|ZP_08162063.1| ribosome recycling factor [Lactobacillus reuteri MM4-1A] gi|166991557|sp|A5VJC8|RRF_LACRD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|229564260|sp|B2G6U4|RRF_LACRJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|148530953|gb|ABQ82952.1| ribosome recycling factor [Lactobacillus reuteri DSM 20016] gi|183224659|dbj|BAG25176.1| ribosome recycling factor [Lactobacillus reuteri JCM 1112] gi|227070173|gb|EEI08548.1| ribosome recycling factor [Lactobacillus reuteri MM2-3] gi|324978385|gb|EGC15335.1| ribosome recycling factor [Lactobacillus reuteri MM4-1A] Length = 187 Score = 147 bits (372), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 72/179 (40%), Positives = 117/179 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + K +M + L++ + +R G+ + S+L+ VKVE YG+ PLNQVA++T+ E R L Sbjct: 8 LNDAKQKMAKSGYALQRTLADIRAGQANASLLNSVKVEYYGAPTPLNQVASITIPEARQL 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +D+ ++ +E+ I+ SNLGL P +G +R+ +P+ TE+RR LVK A EK+K Sbjct: 68 LITPYDESVLEEIEKAIYASNLGLTPQNDGSSIRLIIPQLTEDRRKELVKDVKAELEKAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRN+RR+ MD LKK K+G ++D LE +Q TD+ IKN++ K+KE+M Sbjct: 128 VAVRNVRREAMDDLKKGNKNGDFNDDEFHDLEKKVQNETDAGIKNLEDIANAKEKELME 186 >gi|145589629|ref|YP_001156226.1| ribosome recycling factor [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|189044064|sp|A4SYU8|RRF_POLSQ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|145048035|gb|ABP34662.1| ribosome recycling factor [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 186 Score = 147 bits (372), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 74/176 (42%), Positives = 115/176 (65%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 N +M ++ LK + +R+GR +P +L+ + V+ YG+ PL+QVA++ + + R + V Sbjct: 9 NTDQKMQKSLESLKSSLAKIRSGRANPGILEHIHVDYYGNPTPLSQVASLGLADARTINV 68 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 ++K MVA+VE+ I +S+LGLNP +G V+R+P+P TEERR L KV + E +KI+ Sbjct: 69 QPFEKTMVAAVEKAIRDSDLGLNPASQGTVIRVPMPALTEERRRELTKVVKSEGEDTKIA 128 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 VRN+RRD +HLK+ K + SED ++IQK+TD + +ID EK+KEIM Sbjct: 129 VRNLRRDANEHLKRLTKDKEISEDEERRATDEIQKMTDKAVVDIDKIIVEKEKEIM 184 >gi|240118875|ref|ZP_04732937.1| ribosome recycling factor [Neisseria gonorrhoeae PID1] gi|268604584|ref|ZP_06138751.1| ribosome recycling factor [Neisseria gonorrhoeae PID1] gi|268588715|gb|EEZ53391.1| ribosome recycling factor [Neisseria gonorrhoeae PID1] Length = 185 Score = 147 bits (372), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 76/180 (42%), Positives = 115/180 (63%), Gaps = 1/180 (0%) Query: 6 DLQNIKD-RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D+Q + +M ++ LK+++ +RTGR +LD V+VE +GS VP++QVANVT+L+ R Sbjct: 4 DIQKTAEGKMQRSVEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVANVTLLDAR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 + V ++ M A VE+ I +SNLGLNP G ++R+P+P TEERR L+KV AE+ Sbjct: 64 TIGVKPFEGNMAAKVEKAIRDSNLGLNPAAVGDLIRVPMPMLTEERRKNLIKVVRGEAEE 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++S+RN+RRD DH+KK K + SED E +QK+TD I D K++++M Sbjct: 124 GRVSIRNVRRDANDHIKKLLKDKEISEDEARRGEEAVQKLTDKYIAEADKVLAAKEEDLM 183 >gi|296127609|ref|YP_003634861.1| ribosome recycling factor [Brachyspira murdochii DSM 12563] gi|296019425|gb|ADG72662.1| ribosome recycling factor [Brachyspira murdochii DSM 12563] Length = 182 Score = 147 bits (372), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 80/176 (45%), Positives = 113/176 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ KDRM IS L+ D+ +RTGR + S+LD VKVEAYGS++PL QV NV+ + R ++ Sbjct: 4 ESYKDRMEKAISSLQNDLKGIRTGRANASILDGVKVEAYGSNMPLKQVGNVSTPDSRTIM 63 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +DK +V+ +E+ I +++LG NP +G +RI VPE T+ERR L K E++KI Sbjct: 64 IQPFDKGLVSDIEKAILKADLGFNPFNDGGNIRIVVPELTKERREELKKGVRHRGEEAKI 123 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +VRNIRRD D +KK K +ED S E IQ TD+ IK ID K+KE+ Sbjct: 124 AVRNIRRDENDKIKKELKDKTITEDESKSQEKRIQNETDAYIKKIDEMINTKEKEL 179 >gi|225856606|ref|YP_002738117.1| ribosome recycling factor [Streptococcus pneumoniae P1031] gi|254809536|sp|C1CK29|RRF_STRZP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|225725685|gb|ACO21537.1| ribosome recycling factor [Streptococcus pneumoniae P1031] Length = 185 Score = 147 bits (372), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 73/179 (40%), Positives = 113/179 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+RM + L ++ +R GR + S+LD + VE YG PLNQ+A++T+ E R+L Sbjct: 6 IEKAKERMTQSHQSLAREFGGIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + +ER ++ S+LG P +G V+R+ VP TEE R L K E +K Sbjct: 66 LVTPFDKSSLKDIERALNASDLGNTPANDGSVIRLVVPALTEETRRDLAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRNIRRD MD KK K+ + +ED + +LE DIQK+TD +K+ID K+KE++ Sbjct: 126 VAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELLE 184 >gi|193212052|ref|YP_001998005.1| ribosome recycling factor [Chlorobaculum parvum NCIB 8327] gi|238692606|sp|B3QL17|RRF_CHLP8 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|193085529|gb|ACF10805.1| ribosome recycling factor [Chlorobaculum parvum NCIB 8327] Length = 186 Score = 147 bits (372), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 79/178 (44%), Positives = 108/178 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q I+ RM TI + ++ ++RTG+ + ++LD VKVEAYGS +PL QV NV VL+ L Sbjct: 7 IQKIEPRMKKTIEAFQHEIASIRTGKATTALLDRVKVEAYGSQMPLKQVGNVGVLDVHTL 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V VWDK MV +VER I ++NLGLNP +GQ +RI +P TEERR VK+ + E SK Sbjct: 67 SVQVWDKSMVGAVERAIRDANLGLNPSADGQTVRISIPPLTEERRKEYVKLTKKFGEDSK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +S+RN RRD + L K K SED + + + K I +K+KEIM Sbjct: 127 VSLRNHRRDLIHELDKLEKEKAISEDDKNHGKKEADDLVHKYEKKITEMIAQKEKEIM 184 >gi|261364373|ref|ZP_05977256.1| ribosome recycling factor [Neisseria mucosa ATCC 25996] gi|288567641|gb|EFC89201.1| ribosome recycling factor [Neisseria mucosa ATCC 25996] Length = 185 Score = 147 bits (372), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 76/182 (41%), Positives = 116/182 (63%), Gaps = 1/182 (0%) Query: 6 DLQNIKD-RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D+Q + +M ++ LK+++ +RTGR +LD V+VE +GS VP++QVANVT+L+ R Sbjct: 4 DIQKTAESKMQRSVEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVANVTLLDAR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 + V ++ M A VE+ I +SNLGLNP G ++R+P+P TEERR L+KV + AE+ Sbjct: 64 TIGVKPFESNMAAKVEKAIRDSNLGLNPAAVGDLIRVPMPMLTEERRKDLIKVVRSEAEE 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++S+RN+RRD DH+KK K + SED E +QK+TD I D K++++M Sbjct: 124 GRVSIRNVRRDANDHIKKLLKEKEISEDEARRGEEAVQKLTDKYIAEADKTLAAKEEDLM 183 Query: 185 HF 186 Sbjct: 184 AI 185 >gi|34762371|ref|ZP_00143373.1| Ribosome Recycling Factor (RRF) [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887953|gb|EAA25019.1| Ribosome Recycling Factor (RRF) [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 190 Score = 147 bits (372), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 78/179 (43%), Positives = 113/179 (63%), Gaps = 2/179 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +++M TI +K+ +R GR + SMLD VKVE YGS VPLNQ+ V+ E R+L Sbjct: 9 IKECEEKMVKTIEAVKEKFTAIRAGRANVSMLDGVKVENYGSEVPLNQIGTVSAPEARLL 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK +++ VE+ + +NLG+ P +G+V+R+ +PE T ERR VK+A AE K Sbjct: 69 VIDPWDKSLISKVEKALLAANLGMTPNNDGRVIRLVLPELTAERRKEYVKLAKNEAENGK 128 Query: 127 ISVRNIRRDGMDHLKK--SRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 I+VRNIR+D +HLKK K SED + E +Q +TD +K ID +K+KEI Sbjct: 129 IAVRNIRKDINNHLKKLEKDKENPISEDELKKEETRVQTLTDKYVKEIDDLLAKKEKEI 187 >gi|317484674|ref|ZP_07943575.1| ribosome recycling factor [Bilophila wadsworthia 3_1_6] gi|316924030|gb|EFV45215.1| ribosome recycling factor [Bilophila wadsworthia 3_1_6] Length = 186 Score = 147 bits (372), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 71/180 (39%), Positives = 112/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +DRM + L +D LRTGR S ++D +KV+ YG+ P++Q+A+V + + R + Sbjct: 7 LLDSEDRMDKALGALDRDFSRLRTGRASTGLVDNIKVDYYGTPTPISQLASVAIPDSRTI 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WD+ A VE+ I +S+LGL P+ +G+++RI +P TE+RR L K+A E++K Sbjct: 67 TIQPWDRGAFAGVEKAILKSDLGLTPVNDGKIIRISIPPLTEDRRKELGKLARKSGEEAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RRD D LKK K SED + +D+QK+TD + +D K+KEIM Sbjct: 127 VAVRNVRRDANDQLKKLEKDKAISEDELKKATDDVQKLTDRYVAKVDEKCAAKEKEIMDL 186 >gi|254303395|ref|ZP_04970753.1| ribosome recycling factor [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323587|gb|EDK88837.1| ribosome recycling factor [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 190 Score = 147 bits (372), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 77/179 (43%), Positives = 114/179 (63%), Gaps = 2/179 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +++M TI +K+ +R GR + SMLD VKVE YGS VPLNQ+ V+ E R+L Sbjct: 9 VKECEEKMLKTIEAVKEKFTAIRAGRANVSMLDGVKVENYGSEVPLNQIGTVSAPEARLL 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK +++ +E+ + +NLG+ P +G+V+R+ +PE T +RR VK+A AE K Sbjct: 69 VIDPWDKSLISKIEKALLAANLGMTPNNDGRVIRLVLPELTADRRKEYVKLAKNEAENGK 128 Query: 127 ISVRNIRRDGMDHLKK--SRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 I+VRNIR+D +HLKK K SED + E +Q +TD +K ID F +K+KEI Sbjct: 129 IAVRNIRKDINNHLKKLEKDKENPISEDELKKEEATVQTLTDKYVKEIDDLFAKKEKEI 187 >gi|229829209|ref|ZP_04455278.1| hypothetical protein GCWU000342_01296 [Shuttleworthia satelles DSM 14600] gi|229792372|gb|EEP28486.1| hypothetical protein GCWU000342_01296 [Shuttleworthia satelles DSM 14600] Length = 189 Score = 147 bits (372), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 70/178 (39%), Positives = 117/178 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M +++ L + +++R GR +P +LD ++VE YG+ PL QVANV+V E RM+ Sbjct: 10 LNPYEEKMKKSVNALLAEYVSIRAGRANPHILDKIEVEYYGAPTPLQQVANVSVPEARMI 69 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + W+ ++ +E+ I+ S++G++P +G+ +R+ PE TE+RR LVK E +K Sbjct: 70 QIQPWESSLLKEIEKAINMSDVGIHPTNDGKTIRLVFPELTEDRRKELVKDVKKKGENAK 129 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++RNIRRD MD KK +KS SED +A LE+ QK+TD +K +D ++K +E+M Sbjct: 130 VAIRNIRRDAMDEFKKLKKSEDMSEDAIADLEDQAQKLTDRYVKILDQEIDKKTQELM 187 >gi|153812431|ref|ZP_01965099.1| hypothetical protein RUMOBE_02830 [Ruminococcus obeum ATCC 29174] gi|149831593|gb|EDM86680.1| hypothetical protein RUMOBE_02830 [Ruminococcus obeum ATCC 29174] Length = 183 Score = 147 bits (372), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 78/178 (43%), Positives = 113/178 (63%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q + +M T+ + ++ T+R GR +P +LD + V+ YGS PL QVAN+TV E RM+ Sbjct: 5 VQKYEQKMTKTLDGFEAELTTIRAGRANPHILDKITVDYYGSPTPLQQVANITVPEARMI 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + W+ ++ +E+ I S+LGLNP +G+++R+ +PE TEERR LVK E +K Sbjct: 65 QIQPWESSLIKGIEKAILTSDLGLNPSNDGKIVRLVLPELTEERRKDLVKDVKKKGEAAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++VRNIRRD D KK K SED V LE+ +QK+TD IK ID+ E K KEI+ Sbjct: 125 VAVRNIRRDANDAFKKLTKQD-VSEDEVKDLEDAVQKLTDKFIKKIDAAVEVKSKEIL 181 >gi|85059918|ref|YP_455620.1| ribosome recycling factor [Sodalis glossinidius str. 'morsitans'] gi|123518938|sp|Q2NRL0|RRF_SODGM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|84780438|dbj|BAE75215.1| ribosome recycling factor [Sodalis glossinidius str. 'morsitans'] Length = 185 Score = 147 bits (372), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 73/174 (41%), Positives = 109/174 (62%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM + K + +RTGR SPS+LD ++++ YG PL Q+AN+ + R L ++V+D Sbjct: 12 RMEKCVDAFKSHISKVRTGRASPSLLDGIQIDYYGLLTPLRQLANIIAEDSRTLAITVFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + + +VE+ I S+LGLNP G V+R+P+P TEERR L+KV A AE+ ++SVRN+ Sbjct: 72 RTLAPAVEKAIMASDLGLNPSSAGTVIRVPLPPLTEERRRDLIKVVRAEAEQGRVSVRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD D +K K ED +++IQK+TD+ IK +DS EK+ E+M Sbjct: 132 RRDANDKVKALLKDKTIGEDEDRRSQDEIQKLTDAWIKKLDSALAEKEAELMEI 185 >gi|94500625|ref|ZP_01307155.1| ribosome recycling factor [Oceanobacter sp. RED65] gi|94427180|gb|EAT12160.1| ribosome recycling factor [Oceanobacter sp. RED65] Length = 185 Score = 147 bits (372), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 70/178 (39%), Positives = 114/178 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM +++ + + +RTGR PS+LD + V+ YG+ P+NQ+ANV V + R L Sbjct: 7 KDAEERMKKSLAAMIEAFKKVRTGRAHPSLLDGINVDYYGNPTPINQLANVNVEDGRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++ W+K +V +E+ I +S+LG+ P G+ +R+P+P TEE R +K A A AEK ++ Sbjct: 67 ITPWEKPLVPEIEKAIMKSDLGITPATSGETIRVPMPMLTEETRKGFIKQARAEAEKGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 S+RN+RRD +K K + SED EN+IQK+TD I ++DS EK+K++M Sbjct: 127 SIRNVRRDANSSVKDLLKEKEISEDEERQAENEIQKLTDKFIADVDSLLVEKEKDLMQ 184 >gi|59802114|ref|YP_208826.1| Rrf [Neisseria gonorrhoeae FA 1090] gi|239997972|ref|ZP_04717896.1| ribosome recycling factor [Neisseria gonorrhoeae 35/02] gi|240015050|ref|ZP_04721963.1| ribosome recycling factor [Neisseria gonorrhoeae DGI18] gi|240017499|ref|ZP_04724039.1| ribosome recycling factor [Neisseria gonorrhoeae FA6140] gi|240081639|ref|ZP_04726182.1| ribosome recycling factor [Neisseria gonorrhoeae FA19] gi|240113920|ref|ZP_04728410.1| ribosome recycling factor [Neisseria gonorrhoeae MS11] gi|240116653|ref|ZP_04730715.1| ribosome recycling factor [Neisseria gonorrhoeae PID18] gi|240122119|ref|ZP_04735081.1| ribosome recycling factor [Neisseria gonorrhoeae PID24-1] gi|240124412|ref|ZP_04737368.1| ribosome recycling factor [Neisseria gonorrhoeae PID332] gi|240124716|ref|ZP_04737602.1| ribosome recycling factor [Neisseria gonorrhoeae SK-92-679] gi|240129089|ref|ZP_04741750.1| ribosome recycling factor [Neisseria gonorrhoeae SK-93-1035] gi|254494674|ref|ZP_05107845.1| ribosome recycling factor [Neisseria gonorrhoeae 1291] gi|260439588|ref|ZP_05793404.1| ribosome recycling factor [Neisseria gonorrhoeae DGI2] gi|268593821|ref|ZP_06127988.1| ribosome-recycling factor [Neisseria gonorrhoeae 35/02] gi|268597736|ref|ZP_06131903.1| ribosome-recycling factor [Neisseria gonorrhoeae FA19] gi|268599984|ref|ZP_06134151.1| ribosome recycling factor [Neisseria gonorrhoeae MS11] gi|268602321|ref|ZP_06136488.1| ribosome recycling factor [Neisseria gonorrhoeae PID18] gi|268683041|ref|ZP_06149903.1| ribosome recycling factor [Neisseria gonorrhoeae PID332] gi|268683291|ref|ZP_06150153.1| ribosome recycling factor [Neisseria gonorrhoeae SK-92-679] gi|268687470|ref|ZP_06154332.1| ribosome recycling factor [Neisseria gonorrhoeae SK-93-1035] gi|75432366|sp|Q5F5X3|RRF_NEIG1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|59719009|gb|AAW90414.1| putative ribosome recycling factor [Neisseria gonorrhoeae FA 1090] gi|226513714|gb|EEH63059.1| ribosome recycling factor [Neisseria gonorrhoeae 1291] gi|268547210|gb|EEZ42628.1| ribosome-recycling factor [Neisseria gonorrhoeae 35/02] gi|268551524|gb|EEZ46543.1| ribosome-recycling factor [Neisseria gonorrhoeae FA19] gi|268584115|gb|EEZ48791.1| ribosome recycling factor [Neisseria gonorrhoeae MS11] gi|268586452|gb|EEZ51128.1| ribosome recycling factor [Neisseria gonorrhoeae PID18] gi|268623325|gb|EEZ55725.1| ribosome recycling factor [Neisseria gonorrhoeae PID332] gi|268623575|gb|EEZ55975.1| ribosome recycling factor [Neisseria gonorrhoeae SK-92-679] gi|268627754|gb|EEZ60154.1| ribosome recycling factor [Neisseria gonorrhoeae SK-93-1035] gi|317165416|gb|ADV08957.1| ribosome recycling factor [Neisseria gonorrhoeae TCDC-NG08107] Length = 185 Score = 147 bits (372), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 76/180 (42%), Positives = 115/180 (63%), Gaps = 1/180 (0%) Query: 6 DLQNIKD-RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D+Q + +M ++ LK+++ +RTGR +LD V+VE +GS VP++QVANVT+L+ R Sbjct: 4 DIQKTAEGKMQRSVEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVANVTLLDAR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 + V ++ M A VE+ I +SNLGLNP G ++R+P+P TEERR L+KV AE+ Sbjct: 64 TIGVKPFEGNMAAKVEKAIRDSNLGLNPAAVGDLIRVPMPMLTEERRKDLIKVVRGEAEE 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++S+RN+RRD DH+KK K + SED E +QK+TD I D K++++M Sbjct: 124 GRVSIRNVRRDANDHIKKLLKDKEISEDEARRGEEAVQKLTDKYIAEADKVLAAKEEDLM 183 >gi|256846527|ref|ZP_05551984.1| ribosome recycling factor [Fusobacterium sp. 3_1_36A2] gi|294784116|ref|ZP_06749417.1| ribosome recycling factor [Fusobacterium sp. 3_1_27] gi|256718296|gb|EEU31852.1| ribosome recycling factor [Fusobacterium sp. 3_1_36A2] gi|294488186|gb|EFG35531.1| ribosome recycling factor [Fusobacterium sp. 3_1_27] Length = 190 Score = 147 bits (372), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 78/179 (43%), Positives = 113/179 (63%), Gaps = 2/179 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +++M TI +K+ +R GR + SMLD VKVE YGS VPLNQ+ V+ E R+L Sbjct: 9 IKECEEKMLKTIEAVKEKFTAIRAGRANVSMLDGVKVENYGSEVPLNQIGTVSAPEARLL 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK +++ VE+ + +NLG+ P +G+V+R+ +PE T ERR VK+A AE K Sbjct: 69 VIDPWDKSLISKVEKALLAANLGMTPNNDGRVIRLVLPELTAERRKEYVKLAKNEAENGK 128 Query: 127 ISVRNIRRDGMDHLKK--SRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 I+VRNIR+D +HLKK K SED + E +Q +TD +K ID +K+KEI Sbjct: 129 IAVRNIRKDINNHLKKLEKDKENPISEDELKKEETRVQTLTDKYVKEIDDLLAKKEKEI 187 >gi|261880120|ref|ZP_06006547.1| ribosome recycling factor [Prevotella bergensis DSM 17361] gi|270333204|gb|EFA43990.1| ribosome recycling factor [Prevotella bergensis DSM 17361] Length = 186 Score = 147 bits (372), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 72/178 (40%), Positives = 119/178 (66%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ +D+M + +L++++ +R GR + +++D V+V AYG VPLNQVA V++ + R + Sbjct: 8 LKSAEDKMSNGAKYLEEELARVRAGRANVAIVDGVRVNAYGESVPLNQVATVSIADARTI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WD++ +A VE+GI +S++G+ P G+++ + +P+ TEERR LVK + E++K Sbjct: 68 TIRPWDRKQIADVEKGIMDSDVGITPENNGEMVILHLPQPTEERRKELVKQCNKIGEQTK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 + +RNIR + D LKK+ K G SED END+QK+ D IKN+++ E K KEIM Sbjct: 128 VQIRNIRSEYKDKLKKAVKDG-LSEDAGKDAENDLQKLHDKYIKNVEAILEAKHKEIM 184 >gi|33592520|ref|NP_880164.1| ribosome recycling factor [Bordetella pertussis Tohama I] gi|33596177|ref|NP_883820.1| ribosome recycling factor [Bordetella parapertussis 12822] gi|33601585|ref|NP_889145.1| ribosome recycling factor [Bordetella bronchiseptica RB50] gi|39932121|sp|Q7VYC7|RRF_BORPE RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|39932131|sp|Q7WA57|RRF_BORPA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|39932138|sp|Q7WJ91|RRF_BORBR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|33572166|emb|CAE41712.1| ribosome recycling factor [Bordetella pertussis Tohama I] gi|33573180|emb|CAE36832.1| ribosome recycling factor [Bordetella parapertussis] gi|33576021|emb|CAE33101.1| ribosome recycling factor [Bordetella bronchiseptica RB50] gi|332381938|gb|AEE66785.1| ribosome recycling factor [Bordetella pertussis CS] Length = 186 Score = 147 bits (372), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 73/172 (42%), Positives = 111/172 (64%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM ++ LK + +RTGR +LD V+VE YGS VP++QVANV +++ R + V ++ Sbjct: 13 RMAKSLETLKASLAKIRTGRAHTGILDHVQVEYYGSPVPISQVANVNLVDARTISVQPYE 72 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K M +E+ I ES+LGLNP+ G+ +R+P+P TEERR L KV + E +K++VRN+ Sbjct: 73 KSMAGPIEKAIRESDLGLNPVSMGETIRVPMPALTEERRRDLTKVVKSEGEDAKVAVRNL 132 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RR+ + LKK K + SED ++D+QK+TD + +ID +K+ EIM Sbjct: 133 RREANEALKKLVKDKEISEDDERRAQDDVQKLTDRAVGDIDKMIVQKEAEIM 184 >gi|255067012|ref|ZP_05318867.1| ribosome recycling factor [Neisseria sicca ATCC 29256] gi|255048837|gb|EET44301.1| ribosome recycling factor [Neisseria sicca ATCC 29256] Length = 185 Score = 147 bits (372), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 76/182 (41%), Positives = 116/182 (63%), Gaps = 1/182 (0%) Query: 6 DLQNIKD-RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D+Q + +M ++ LK+++ +RTGR +LD V+VE +GS VP++QVANVT+L+ R Sbjct: 4 DIQKTAESKMQRSVEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVANVTLLDAR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 + V ++ M A VE+ I +SNLGLNP G ++R+P+P TEERR L+KV + AE+ Sbjct: 64 TIGVKPFESNMAAKVEKAIRDSNLGLNPAAVGDLIRVPMPMLTEERRKDLIKVVRSEAEE 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++S+RN+RRD DH+KK K + SED E +QK+TD I D K++++M Sbjct: 124 GRVSIRNVRRDANDHIKKLLKDKEISEDEARRGEEAVQKLTDKYIAEADKTLAAKEEDLM 183 Query: 185 HF 186 Sbjct: 184 AI 185 >gi|227551763|ref|ZP_03981812.1| ribosome recycling factor [Enterococcus faecium TX1330] gi|257878533|ref|ZP_05658186.1| ribosome recycling factor [Enterococcus faecium 1,230,933] gi|257883168|ref|ZP_05662821.1| ribosome recycling factor [Enterococcus faecium 1,231,502] gi|257884335|ref|ZP_05663988.1| ribosome recycling factor [Enterococcus faecium 1,231,501] gi|257887076|ref|ZP_05666729.1| ribosome recycling factor [Enterococcus faecium 1,141,733] gi|257889270|ref|ZP_05668923.1| ribosome recycling factor [Enterococcus faecium 1,231,410] gi|257895641|ref|ZP_05675294.1| ribosome recycling factor [Enterococcus faecium Com12] gi|257898231|ref|ZP_05677884.1| ribosome recycling factor [Enterococcus faecium Com15] gi|258615941|ref|ZP_05713711.1| ribosome recycling factor [Enterococcus faecium DO] gi|260560118|ref|ZP_05832296.1| ribosome recycling factor [Enterococcus faecium C68] gi|261208147|ref|ZP_05922821.1| ribosome recycling factor [Enterococcus faecium TC 6] gi|289566196|ref|ZP_06446629.1| ribosome recycling factor [Enterococcus faecium D344SRF] gi|293377748|ref|ZP_06623937.1| ribosome recycling factor [Enterococcus faecium PC4.1] gi|293556642|ref|ZP_06675207.1| ribosome recycling factor [Enterococcus faecium E1039] gi|293560147|ref|ZP_06676650.1| ribosome recycling factor [Enterococcus faecium E1162] gi|293567410|ref|ZP_06678757.1| ribosome recycling factor [Enterococcus faecium E1071] gi|293570620|ref|ZP_06681671.1| ribosome recycling factor [Enterococcus faecium E980] gi|294613944|ref|ZP_06693879.1| ribosome recycling factor [Enterococcus faecium E1636] gi|294620329|ref|ZP_06699645.1| ribosome recycling factor [Enterococcus faecium E1679] gi|294620756|ref|ZP_06699963.1| ribosome recycling factor [Enterococcus faecium U0317] gi|314937498|ref|ZP_07844831.1| ribosome recycling factor [Enterococcus faecium TX0133a04] gi|314942157|ref|ZP_07849011.1| ribosome recycling factor [Enterococcus faecium TX0133C] gi|314947503|ref|ZP_07850918.1| ribosome recycling factor [Enterococcus faecium TX0082] gi|314951490|ref|ZP_07854539.1| ribosome recycling factor [Enterococcus faecium TX0133A] gi|314992580|ref|ZP_07857998.1| ribosome recycling factor [Enterococcus faecium TX0133B] gi|314995485|ref|ZP_07860585.1| ribosome recycling factor [Enterococcus faecium TX0133a01] gi|227179068|gb|EEI60040.1| ribosome recycling factor [Enterococcus faecium TX1330] gi|257812761|gb|EEV41519.1| ribosome recycling factor [Enterococcus faecium 1,230,933] gi|257818826|gb|EEV46154.1| ribosome recycling factor [Enterococcus faecium 1,231,502] gi|257820173|gb|EEV47321.1| ribosome recycling factor [Enterococcus faecium 1,231,501] gi|257823130|gb|EEV50062.1| ribosome recycling factor [Enterococcus faecium 1,141,733] gi|257825630|gb|EEV52256.1| ribosome recycling factor [Enterococcus faecium 1,231,410] gi|257832206|gb|EEV58627.1| ribosome recycling factor [Enterococcus faecium Com12] gi|257836143|gb|EEV61217.1| ribosome recycling factor [Enterococcus faecium Com15] gi|260073953|gb|EEW62277.1| ribosome recycling factor [Enterococcus faecium C68] gi|260077581|gb|EEW65298.1| ribosome recycling factor [Enterococcus faecium TC 6] gi|289161974|gb|EFD09841.1| ribosome recycling factor [Enterococcus faecium D344SRF] gi|291589807|gb|EFF21608.1| ribosome recycling factor [Enterococcus faecium E1071] gi|291593219|gb|EFF24793.1| ribosome recycling factor [Enterococcus faecium E1636] gi|291593441|gb|EFF24999.1| ribosome recycling factor [Enterococcus faecium E1679] gi|291599736|gb|EFF30746.1| ribosome recycling factor [Enterococcus faecium U0317] gi|291601177|gb|EFF31464.1| ribosome recycling factor [Enterococcus faecium E1039] gi|291605880|gb|EFF35311.1| ribosome recycling factor [Enterococcus faecium E1162] gi|291609291|gb|EFF38562.1| ribosome recycling factor [Enterococcus faecium E980] gi|292643748|gb|EFF61869.1| ribosome recycling factor [Enterococcus faecium PC4.1] gi|313590319|gb|EFR69164.1| ribosome recycling factor [Enterococcus faecium TX0133a01] gi|313592872|gb|EFR71717.1| ribosome recycling factor [Enterococcus faecium TX0133B] gi|313596330|gb|EFR75175.1| ribosome recycling factor [Enterococcus faecium TX0133A] gi|313599080|gb|EFR77925.1| ribosome recycling factor [Enterococcus faecium TX0133C] gi|313643139|gb|EFS07719.1| ribosome recycling factor [Enterococcus faecium TX0133a04] gi|313646053|gb|EFS10633.1| ribosome recycling factor [Enterococcus faecium TX0082] Length = 185 Score = 147 bits (372), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 68/176 (38%), Positives = 117/176 (66%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K++M L++++ +R GR + S+LD + V YG+ PLNQ+A++ + E R+L+++ Sbjct: 10 KEKMKKAAQNLQRELGQIRAGRANASLLDRITVNYYGAPTPLNQMASIQIPEARVLMITP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +DK ++ VE+ I S++G++P +G V+R+ +P+ TEERR L K AE +KI++R Sbjct: 70 FDKSILQDVEKAIMASDIGISPTNDGNVIRLVIPQLTEERRKELAKDVKKEAENAKIAIR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 NIRRD +D KK +K+G +ED + LE D+Q +TD++IK +D +K+KE++ Sbjct: 130 NIRRDAIDEYKKQQKNGDITEDDLRGLEKDVQTLTDNSIKEVDKIAADKEKELLEV 185 >gi|284928759|ref|YP_003421281.1| ribosome recycling factor [cyanobacterium UCYN-A] gi|284809218|gb|ADB94923.1| ribosome recycling factor [cyanobacterium UCYN-A] Length = 181 Score = 147 bits (372), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 73/178 (41%), Positives = 115/178 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++KD M T+ +K TLRTGR + ++LD V V+ YGS V L +AN+ + L Sbjct: 2 LNDLKDSMKKTVESTQKSFNTLRTGRANSAILDRVTVDYYGSEVQLKSLANINTPDATTL 61 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D+ + +E+ I+ S++GL P +GQV+R+ +P T+ERR LVK+A+ AE+ K Sbjct: 62 LIQPFDRGSIGQIEKAINMSDVGLTPNNDGQVIRLNIPPLTKERRKELVKIANKMAEEGK 121 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++RNIRRD ++ ++K K G ASED +L+++IQK+TD K ID K K+IM Sbjct: 122 VAIRNIRRDAIETVRKQEKDGDASEDESRNLQDNIQKVTDEFTKKIDELLTIKNKDIM 179 >gi|37926485|pdb|1ISE|A Chain A, Crystal Structure Of A Mutant Of Ribosome Recycling Factor From Escherichia Coli, Arg132gly Length = 185 Score = 147 bits (372), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 73/174 (41%), Positives = 111/174 (63%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM + K + +RTGR SPS+LD + VE YG+ PL Q+A+VTV + R L ++V+D Sbjct: 12 RMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + M +VE+ I S+LGLNP G +R+P+P TEERR L K+ AE+++++VRN+ Sbjct: 72 RSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RD D +K K + SED ++D+QK+TD+ IK I++ +K+ E+M F Sbjct: 132 GRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAALADKEAELMQF 185 >gi|322388009|ref|ZP_08061616.1| ribosome recycling factor [Streptococcus infantis ATCC 700779] gi|321141282|gb|EFX36780.1| ribosome recycling factor [Streptococcus infantis ATCC 700779] Length = 185 Score = 147 bits (372), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 71/178 (39%), Positives = 114/178 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+RM + L ++ ++R GR + S+LD + VE YG PLNQ+A++T+ E R+L Sbjct: 6 VEKAKERMTQSHHSLSREFGSIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + +ER ++ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LVTPFDKTSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++RNIRRD MD KK K+ + +ED + +LE DIQK TD +K+ID K+KE++ Sbjct: 126 VAIRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKATDDAVKHIDDMTANKEKELL 183 >gi|254513846|ref|ZP_05125907.1| ribosome recycling factor [gamma proteobacterium NOR5-3] gi|219676089|gb|EED32454.1| ribosome recycling factor [gamma proteobacterium NOR5-3] Length = 185 Score = 147 bits (372), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 72/174 (41%), Positives = 108/174 (62%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM +++ L + +RTGR PS+LD +KV YG+ PL+QVANV V + R L ++ WD Sbjct: 12 RMKNSLEALGTNFNKIRTGRAHPSLLDGIKVSYYGADTPLSQVANVNVEDARTLSLTAWD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + M+ +ER I +S+LGLNP G+V+RIP+P TEE R +K A + AE +++SVRN Sbjct: 72 RSMIPDIERAIMKSDLGLNPATAGEVIRIPMPALTEETRKGYIKQARSEAEAARVSVRNA 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD M LK+ K + ED ++ IQK+TDS + +D K+ +++ Sbjct: 132 RRDAMGMLKELVKDKEIGEDDERRGQDQIQKLTDSFVARVDEMLTAKEADLLEI 185 >gi|331005977|ref|ZP_08329322.1| Ribosome recycling factor [gamma proteobacterium IMCC1989] gi|330420222|gb|EGG94543.1| Ribosome recycling factor [gamma proteobacterium IMCC1989] Length = 185 Score = 147 bits (372), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 75/179 (41%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q K +M ++ L + +RTGR PS+LD +KV+ YGS PL+QVAN++VL+ R L Sbjct: 7 QEAKVQMQKSLEALGINFNKIRTGRAHPSILDGIKVDYYGSDTPLSQVANISVLDARTLS 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S W+K++ +E+ I +S+LGLNP G ++R+P+P TEE R K A + AE +KI Sbjct: 67 ISPWEKQLTPQIEKAIMKSDLGLNPSTTGDLIRLPMPMLTEETRKNYTKQAKSEAESAKI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRN RRD + HLK K + ED +++IQKITD + +IDS +K+ +++ Sbjct: 127 SVRNARRDALGHLKDLLKDKEIGEDDERRGQDEIQKITDKFVADIDSALADKETDLLKI 185 >gi|224372138|ref|YP_002606510.1| ribosome recycling factor [Nautilia profundicola AmH] gi|223590013|gb|ACM93749.1| ribosome recycling factor [Nautilia profundicola AmH] Length = 184 Score = 147 bits (371), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 77/174 (44%), Positives = 110/174 (63%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K+ M +I LKKD+ TLRTG+VS +LD VKVE YG+ PLNQVANV ++ +VVS Sbjct: 9 KEHMEKSIEVLKKDLNTLRTGKVSIHVLDGVKVEYYGAPTPLNQVANVNAVDATTIVVSP 68 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 WDK ++ +ER I E+N+G NP +G V+++ P TEE R K A +AEK+KI++R Sbjct: 69 WDKSIINDIERAIQEANVGANPNNDGDVIKLYFPPMTEEERKKQAKKAKEFAEKAKIAIR 128 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 NIRRD D +KK K + +ED +Q+ITD+ + +D +K ++M Sbjct: 129 NIRRDANDDIKKMFKDKEITEDDQKRGLEKVQEITDAYVAKVDEIVNKKIDDVM 182 >gi|323143563|ref|ZP_08078240.1| ribosome recycling factor [Succinatimonas hippei YIT 12066] gi|322416626|gb|EFY07283.1| ribosome recycling factor [Succinatimonas hippei YIT 12066] Length = 185 Score = 147 bits (371), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 75/179 (41%), Positives = 109/179 (60%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ RM I L + +RTGR P +LD + V+ YGS PL QVA V V + R L Sbjct: 7 QDASVRMQKAIDSLSSRLAKIRTGRAQPGILDGIMVDYYGSPTPLRQVAQVNVEDARTLK 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ + VE+ I +S+LGLNP+V G +R+P+P TEERR LVKV E++++ Sbjct: 67 LTVFDRNAIKDVEKAIQKSDLGLNPVVAGIDIRVPLPPLTEERRKDLVKVVRGEIEQTRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +RNIRRD + LK K+ + SED E+ IQK+TD+++K D K+KE+M Sbjct: 127 EIRNIRRDANNELKALEKAKEISEDEQHGGEDQIQKLTDASVKKCDELLAAKEKELMEI 185 >gi|319948055|ref|ZP_08022229.1| ribosome recycling factor [Dietzia cinnamea P4] gi|319438294|gb|EFV93240.1| ribosome recycling factor [Dietzia cinnamea P4] Length = 185 Score = 147 bits (371), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 69/179 (38%), Positives = 114/179 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + ++ ++ ++RTGR +P M + V E YG+ P+ Q++++TV EPRML Sbjct: 6 LLEAEEKMERALEHVRDELASIRTGRANPGMFNRVLCEYYGTLTPITQMSSITVPEPRML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ ++ + +E I S+LG+NP +GQVLR+ VP+ TEERR LVK A A AE + Sbjct: 66 IIKPYEMSQIGPIENAIRNSDLGVNPTNDGQVLRVTVPQLTEERRRDLVKQAKAKAEDGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 I+VR +RR MD LK+ +K G+A ED V + E ++ K+T + ++D + K+ E+M Sbjct: 126 IAVRGVRRKAMDELKRIQKDGEAGEDEVTAAEKELDKLTQRYVADVDDLVKVKEGELME 184 >gi|294672862|ref|YP_003573478.1| ribosome recycling factor [Prevotella ruminicola 23] gi|294472820|gb|ADE82209.1| ribosome recycling factor [Prevotella ruminicola 23] Length = 186 Score = 147 bits (371), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 75/178 (42%), Positives = 116/178 (65%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++RM +L++++ +R GR + ++LD V+VE YGS VPLNQVANV+V +PR + Sbjct: 8 LNKSEERMEMAAMYLEEELNRIRAGRANVAILDAVRVEVYGSKVPLNQVANVSVPDPRTI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WD++ + ++E+ I +S++G+ P G+++R+ +P+ TEERR L K + AEK+K Sbjct: 68 AIKPWDRKEIRNIEKAIMDSDVGITPENNGEIIRLNIPQPTEERRRDLTKQCNKIAEKAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 + VRN+R D D LKK+ K G SED+ E ++QK+ D IK ID K KEIM Sbjct: 128 VEVRNVRGDIKDKLKKAIKDG-LSEDLEKDAEAELQKLHDKFIKKIDELITAKNKEIM 184 >gi|219847470|ref|YP_002461903.1| ribosome recycling factor [Chloroflexus aggregans DSM 9485] gi|254809501|sp|B8G461|RRF_CHLAD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|219541729|gb|ACL23467.1| ribosome recycling factor [Chloroflexus aggregans DSM 9485] Length = 185 Score = 147 bits (371), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 70/164 (42%), Positives = 112/164 (68%) Query: 21 LKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVE 80 L+ + ++RTGR S ++++ + VEAYG+++PLNQ+AN++V EPRM+++ +D M+ ++E Sbjct: 20 LRHHLASIRTGRASAALVEHLHVEAYGTNMPLNQLANISVPEPRMIIIQPYDTGMIKAIE 79 Query: 81 RGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHL 140 + I +S+LGLNP +G+++R+PVP TEERR LVK+ E+ K+SVRN RRD +D L Sbjct: 80 KAIQQSDLGLNPSNDGRIIRLPVPPLTEERRRELVKMVRHRVEEVKVSVRNQRRDAIDDL 139 Query: 141 KKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 KK SED + + IQ++TD + +D EK+ E+M Sbjct: 140 KKLEADKLISEDELHRGQERIQQLTDRCNRELDQIGAEKEAEVM 183 >gi|305681279|ref|ZP_07404086.1| ribosome recycling factor [Corynebacterium matruchotii ATCC 14266] gi|305659484|gb|EFM48984.1| ribosome recycling factor [Corynebacterium matruchotii ATCC 14266] Length = 185 Score = 147 bits (371), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 69/180 (38%), Positives = 113/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++ M T+ ++++ T+RTGR +P+M + V + YG P+ Q+A V+V E RM+ Sbjct: 6 LLECEEHMSTTVDRTREELTTIRTGRANPAMFNGVVADYYGVPTPITQMATVSVPEARMM 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ ++ M+ +E I S+LG+NP +GQVLR+ +P+ TEERR +VK+A + E K Sbjct: 66 LIKPYEMSMMGVIENAIRNSDLGVNPTNDGQVLRVTIPQLTEERRRDMVKLAKSKGEDGK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RN+RR GMD LKK K G A ED V + E ++ K+T + +D ++K+ E+M Sbjct: 126 IAIRNVRRKGMDQLKKIHKDGDAGEDEVQAAEKELDKVTQKYVAAVDEVVQKKEAELMEV 185 >gi|313667490|ref|YP_004047774.1| ribosome recycling factor [Neisseria lactamica ST-640] gi|309379113|emb|CBX22244.1| unnamed protein product [Neisseria lactamica Y92-1009] gi|313004952|emb|CBN86379.1| ribosome recycling factor [Neisseria lactamica 020-06] Length = 185 Score = 147 bits (371), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 76/180 (42%), Positives = 115/180 (63%), Gaps = 1/180 (0%) Query: 6 DLQNIKD-RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D+Q + +M ++ LK+++ +RTGR +LD V+VE +GS VP++QVANVT+L+ R Sbjct: 4 DIQKTAEGKMQRSVEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVANVTLLDAR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 + V ++ M A VE+ I +SNLGLNP G ++R+P+P TEERR L+KV AE+ Sbjct: 64 TIGVKPFEGNMAAKVEKAIRDSNLGLNPASVGDLIRVPMPMLTEERRKDLIKVVRGEAEE 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++S+RN+RRD DH+KK K + SED E +QK+TD I D K++++M Sbjct: 124 GRVSIRNVRRDANDHIKKLLKDKEISEDEARRGEEAVQKLTDKYIAEADKLLTAKEEDLM 183 >gi|158520494|ref|YP_001528364.1| ribosome recycling factor [Desulfococcus oleovorans Hxd3] gi|238686879|sp|A8ZTM3|RRF_DESOH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|158509320|gb|ABW66287.1| ribosome recycling factor [Desulfococcus oleovorans Hxd3] Length = 185 Score = 147 bits (371), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 70/179 (39%), Positives = 118/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + I+++MG T+ K D+ +RTGR S ++LD + V+ YG+ PLNQ+A+++V E R++V Sbjct: 7 EEIEEKMGKTLEVFKNDLKKVRTGRASLALLDGIVVDYYGTPTPLNQLASLSVPESRLIV 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + WD + VE+ I ++N+ L P +G+V+R+ +P TE+RR + K + AE+ K+ Sbjct: 67 IQPWDATAIKDVEKAILQANIDLTPSNDGKVIRLSIPPLTEDRRKEIAKRVNQMAEEHKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD + LK+ +K G SED + ++ +QK+TD I+ ID F+ K+KEI+ Sbjct: 127 AMRNIRRDANETLKQMKKDGDISEDESFAGKDKVQKVTDGYIERIDEVFKAKEKEILEL 185 >gi|218247353|ref|YP_002372724.1| ribosome recycling factor [Cyanothece sp. PCC 8801] gi|218167831|gb|ACK66568.1| ribosome recycling factor [Cyanothece sp. PCC 8801] Length = 181 Score = 147 bits (371), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 74/178 (41%), Positives = 117/178 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++D M ++ ++ T+RTGR + S+LD V VE YG PLNQ+AN+T + + Sbjct: 2 LAELEDNMQKSVEATQRSFNTIRTGRANASLLDRVIVEYYGMETPLNQLANITTPDATTI 61 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + +DK + ++E+ I+ S+LGL P +G+V+R+ +P TEERR LVK+A AE+ K Sbjct: 62 NILPYDKGSMGAIEKAINLSDLGLTPNNDGKVIRLNIPPLTEERRKELVKLAGKLAEEGK 121 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++RNIRRDG+D ++K K+ + SED +L+++IQKITD ID + K+K+IM Sbjct: 122 VAIRNIRRDGIDTVRKQEKNNEISEDESRNLQDEIQKITDKFTTKIDELLKVKEKDIM 179 >gi|197303245|ref|ZP_03168286.1| hypothetical protein RUMLAC_01968 [Ruminococcus lactaris ATCC 29176] gi|197297671|gb|EDY32230.1| hypothetical protein RUMLAC_01968 [Ruminococcus lactaris ATCC 29176] Length = 183 Score = 147 bits (371), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 79/184 (42%), Positives = 116/184 (63%), Gaps = 3/184 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 MN+ I ++K M TI+ L ++ T+R GR +P +LD + V+ YGS P+ QVANV+V Sbjct: 1 MNEKIAAYDVK--MTKTINNLDGELATIRAGRANPHVLDKIAVDYYGSPTPIQQVANVSV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E RM+ + W+K M+ ++E+ I S++G+NP +G +R+ PE TE+RR L K Sbjct: 59 PEARMIQIQPWEKSMLKAIEKAILTSDIGINPTNDGTSIRLVFPELTEDRRKELAKDVKK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E++K++VRNIRRDG KK K + SED + LE+++QKITD I +D E K Sbjct: 119 KGEEAKVAVRNIRRDGNVAFKK-LKGTEISEDEIKDLEDELQKITDKYIAQVDKMVEAKS 177 Query: 181 KEIM 184 KEIM Sbjct: 178 KEIM 181 >gi|327480157|gb|AEA83467.1| ribosome recycling factor [Pseudomonas stutzeri DSM 4166] Length = 185 Score = 147 bits (371), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 75/177 (42%), Positives = 107/177 (60%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ ++RM T+ L +RTGR PS+LD V V YG+ PL QVANV + R L Sbjct: 7 QDAQERMKKTLEALDHAFAKIRTGRAHPSILDSVMVSYYGADTPLRQVANVVAEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DK M+ +VE+ I S+LGLNP G +R+P+P TEE R K A A AE +++ Sbjct: 67 LTVFDKSMIQAVEKAIMTSDLGLNPATAGTTIRVPMPALTEETRKGYTKQARAEAENARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +VRNIRRD + LK K + SED ++D+QK+TD + ID E K+ ++M Sbjct: 127 AVRNIRRDAIAQLKDLVKEKEISEDEERRGQDDVQKLTDKYVAEIDKALEGKEADLM 183 >gi|183981840|ref|YP_001850131.1| ribosome recycling factor Frr [Mycobacterium marinum M] gi|238689247|sp|B2HJP0|RRF_MYCMM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|183175166|gb|ACC40276.1| ribosome recycling factor Frr [Mycobacterium marinum M] Length = 185 Score = 147 bits (371), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 69/178 (38%), Positives = 113/178 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++M +S ++DM T+RTGR +P M + ++ YG+H P+ Q+A++ V E RM+ Sbjct: 6 LFDAEEKMEKAVSVAREDMATIRTGRANPGMFSRIVIDYYGTHTPITQLASINVPEARMV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ ++ + ++E I S+LG+NP +G ++R+ VP+ TEERR LVK A E+++ Sbjct: 66 VIKPYEANQLHAIETAIRNSDLGVNPTNDGTIIRVAVPQLTEERRRDLVKQAKHKGEEAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +SVRNIRR M+ L + RK G+A ED VA E D+ K T + ID + K+ E++ Sbjct: 126 VSVRNIRRKAMEELHRIRKDGEAGEDEVARAEKDLDKSTHQYVAQIDELVKHKEGELL 183 >gi|225077039|ref|ZP_03720238.1| hypothetical protein NEIFLAOT_02091 [Neisseria flavescens NRL30031/H210] gi|224951596|gb|EEG32805.1| hypothetical protein NEIFLAOT_02091 [Neisseria flavescens NRL30031/H210] Length = 185 Score = 147 bits (371), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 75/172 (43%), Positives = 110/172 (63%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M ++ LK ++ +RTGR +LD V+VE +GS VP++QVANVT+L+ R + V ++ Sbjct: 12 KMQRSLEVLKDNLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVANVTLLDARTIGVKPFE 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 M A VE+ I +SNLGLNP G ++R+P+P TEERR L+KV AE+ ++SVRN+ Sbjct: 72 SNMAAKVEKAIRDSNLGLNPASVGDLIRVPMPMLTEERRKDLIKVVRGEAEEGRVSVRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD DH+KK K + SED E +QK+TD I D K++++M Sbjct: 132 RRDANDHIKKLLKDKEISEDEARRGEEAVQKLTDKYIAEADKLLAAKEEDLM 183 >gi|134094563|ref|YP_001099638.1| ribosome recycling factor [Herminiimonas arsenicoxydans] gi|166230793|sp|A4G4S4|RRF_HERAR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|133738466|emb|CAL61511.1| Ribosome recycling factor (Ribosome-releasing factor) (RRF) [Herminiimonas arsenicoxydans] Length = 186 Score = 147 bits (371), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 75/172 (43%), Positives = 113/172 (65%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M +I LK D+ +RTGR +LD V VE YG+ L QVANVT+++ R + V ++ Sbjct: 13 KMQKSIETLKADLAKVRTGRAHTGILDHVMVEYYGNPTNLTQVANVTLIDARTIGVQPFE 72 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K+MVA VE+ I +++LGLNP +G+++R+P P TEERR +VK+ + AE +KI++RNI Sbjct: 73 KKMVAVVEKAIRDADLGLNPATQGEMIRVPTPPLTEERRKEMVKLVKSEAEDAKIAIRNI 132 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD + LKK K SED +++IQK+TD + +D EK+KE++ Sbjct: 133 RRDANETLKKLLKDKACSEDDERRAQDEIQKLTDKFVLEVDKLVVEKEKEVL 184 >gi|16759209|ref|NP_454826.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16763609|ref|NP_459224.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29140759|ref|NP_804101.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62178789|ref|YP_215206.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161504662|ref|YP_001571774.1| ribosome recycling factor [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|161612590|ref|YP_001586555.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167553369|ref|ZP_02347118.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167990104|ref|ZP_02571204.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168230526|ref|ZP_02655584.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168234997|ref|ZP_02660055.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168244985|ref|ZP_02669917.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168263914|ref|ZP_02685887.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168464218|ref|ZP_02698121.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168823247|ref|ZP_02835247.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194445385|ref|YP_002039459.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450690|ref|YP_002044209.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194470770|ref|ZP_03076754.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194737420|ref|YP_002113242.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197251811|ref|YP_002145224.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197261812|ref|ZP_03161886.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198242060|ref|YP_002214180.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200388182|ref|ZP_03214794.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204927412|ref|ZP_03218614.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205351556|ref|YP_002225357.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207855737|ref|YP_002242388.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213163136|ref|ZP_03348846.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213416682|ref|ZP_03349826.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213425945|ref|ZP_03358695.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213580802|ref|ZP_03362628.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213646665|ref|ZP_03376718.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|224582067|ref|YP_002635865.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238911285|ref|ZP_04655122.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289825712|ref|ZP_06544880.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|54039297|sp|P66739|RRF_SALTI RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|54042005|sp|P66738|RRF_SALTY RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|75484798|sp|Q57T36|RRF_SALCH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|189044071|sp|A9MPI9|RRF_SALAR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|189044072|sp|A9N0S0|RRF_SALPB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226749937|sp|B5F8T3|RRF_SALA4 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226749938|sp|B5FJ19|RRF_SALDC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226749939|sp|B5R3I5|RRF_SALEP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226749940|sp|B5RHF7|RRF_SALG2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238689764|sp|B4TYD2|RRF_SALSV RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238690679|sp|B4TK47|RRF_SALHS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238693523|sp|B4SV01|RRF_SALNS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|254809528|sp|C0Q6J5|RRF_SALPC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|25299716|pir||AE0529 ribosome recycling factor [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16418724|gb|AAL19183.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16501500|emb|CAD08677.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Typhi] gi|29136383|gb|AAO67950.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62126422|gb|AAX64125.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|160866009|gb|ABX22632.1| hypothetical protein SARI_02783 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|161361954|gb|ABX65722.1| hypothetical protein SPAB_00281 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194404048|gb|ACF64270.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408994|gb|ACF69213.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194457134|gb|EDX45973.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194712922|gb|ACF92143.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195632657|gb|EDX51111.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197215514|gb|ACH52911.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197240067|gb|EDY22687.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197291879|gb|EDY31229.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197936576|gb|ACH73909.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605280|gb|EDZ03825.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204324077|gb|EDZ09272.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205271337|emb|CAR36130.1| Ribosome recycling factor [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205322189|gb|EDZ10028.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205331572|gb|EDZ18336.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205335095|gb|EDZ21859.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336212|gb|EDZ22976.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205340485|gb|EDZ27249.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205347503|gb|EDZ34134.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206707540|emb|CAR31814.1| Ribosome recycling factor [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224466594|gb|ACN44424.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261245451|emb|CBG23241.1| RRF [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267991909|gb|ACY86794.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301156846|emb|CBW16322.1| Ribosome recycling factor [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911189|dbj|BAJ35163.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320084473|emb|CBY94266.1| Ribosome-recycling factor RRF; Ribosome-releasing factor [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321222197|gb|EFX47269.1| Ribosome recycling factor [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322616043|gb|EFY12960.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620826|gb|EFY17686.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623823|gb|EFY20660.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627271|gb|EFY24062.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322630578|gb|EFY27342.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638204|gb|EFY34905.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640689|gb|EFY37340.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645527|gb|EFY42054.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648179|gb|EFY44646.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322657130|gb|EFY53413.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657500|gb|EFY53772.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663820|gb|EFY60020.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666653|gb|EFY62831.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672189|gb|EFY68301.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676500|gb|EFY72571.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679408|gb|EFY75453.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686265|gb|EFY82249.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322713243|gb|EFZ04814.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323128539|gb|ADX15969.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323193445|gb|EFZ78653.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197533|gb|EFZ82668.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201198|gb|EFZ86267.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209593|gb|EFZ94526.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212155|gb|EFZ96979.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216460|gb|EGA01186.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323223350|gb|EGA07685.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225911|gb|EGA10131.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228548|gb|EGA12677.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236839|gb|EGA20915.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239661|gb|EGA23708.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242292|gb|EGA26321.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249954|gb|EGA33850.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252384|gb|EGA36235.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255667|gb|EGA39420.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262896|gb|EGA46446.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265382|gb|EGA48878.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271831|gb|EGA55249.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326621923|gb|EGE28268.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326626582|gb|EGE32925.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332987171|gb|AEF06154.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 185 Score = 147 bits (371), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 73/174 (41%), Positives = 110/174 (63%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM + K + +RTGR SPS+LD + VE YG+ PL Q+A+VTV + R L ++V+D Sbjct: 12 RMEKCVEAFKTQISKVRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + M +VE+ I S+LGLNP G +R+P+P TEERR L K+ AE+++++VRN+ Sbjct: 72 RSMGPAVEKAIMASDLGLNPSSAGTDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD D +K K SED + ++QK+TD+ IK +D+ +K+ E+M F Sbjct: 132 RRDANDKVKALLKDKAISEDDDRRSQEEVQKMTDAAIKKVDAALADKEAELMQF 185 >gi|258406064|ref|YP_003198806.1| ribosome recycling factor [Desulfohalobium retbaense DSM 5692] gi|257798291|gb|ACV69228.1| ribosome recycling factor [Desulfohalobium retbaense DSM 5692] Length = 184 Score = 147 bits (371), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 71/176 (40%), Positives = 112/176 (63%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K RM I+ L+K+ LRTGR S S++D ++V Y + PLNQ+A++++ + R + + Sbjct: 9 KKRMEKAITNLEKEFSRLRTGRASASLVDGIQVSYYNTPTPLNQLASISIPDARTIAIQP 68 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 WD+ ++E+ I +S+LGLNP+ +G+++RI +P TEERR LVK+A + E +KI++R Sbjct: 69 WDRSSFENIEKAIMQSDLGLNPVNDGKIIRINIPALTEERRKELVKIAKKHTEDAKIAIR 128 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 NIRRD + LKK + SED + + IQK+TD + + EK+KEIM Sbjct: 129 NIRRDANEELKKQKNDKTISEDDMHRGQEKIQKLTDEFVDKAEKTLTEKEKEIMEI 184 >gi|332701342|ref|ZP_08421430.1| Ribosome-recycling factor [Desulfovibrio africanus str. Walvis Bay] gi|332551491|gb|EGJ48535.1| Ribosome-recycling factor [Desulfovibrio africanus str. Walvis Bay] Length = 184 Score = 147 bits (371), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 71/181 (39%), Positives = 113/181 (62%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 +++ ++ RM + LK++ LRTGR S ++L+ + ++ YGS P++QVA+V + R Sbjct: 4 EIKELETRMQKVVENLKREFGRLRTGRASTTLLEGINIDYYGSSTPISQVASVATPDSRT 63 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 + + WD+ +E+ I S+LGLNP+ +G+++RI +P TEERR LVK+ Y E+ Sbjct: 64 ITIQPWDRGSFGPIEKAIMTSDLGLNPVNDGKIIRISLPPLTEERRKDLVKLGKKYTEEG 123 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 K++VRNIRRDG D LKK K +ED + +++IQK+TD + D K+KEIM Sbjct: 124 KVAVRNIRRDGNDTLKKLEKDKTITEDDLRRGQDEIQKLTDKYVAKCDEALAVKEKEIME 183 Query: 186 F 186 Sbjct: 184 I 184 >gi|153815802|ref|ZP_01968470.1| hypothetical protein RUMTOR_02047 [Ruminococcus torques ATCC 27756] gi|317502106|ref|ZP_07960287.1| ribosome recycling factor [Lachnospiraceae bacterium 8_1_57FAA] gi|331090380|ref|ZP_08339261.1| ribosome-recycling factor [Lachnospiraceae bacterium 3_1_46FAA] gi|145846827|gb|EDK23745.1| hypothetical protein RUMTOR_02047 [Ruminococcus torques ATCC 27756] gi|316896495|gb|EFV18585.1| ribosome recycling factor [Lachnospiraceae bacterium 8_1_57FAA] gi|330401127|gb|EGG80720.1| ribosome-recycling factor [Lachnospiraceae bacterium 3_1_46FAA] Length = 183 Score = 147 bits (371), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 78/172 (45%), Positives = 109/172 (63%), Gaps = 1/172 (0%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M TI+ L ++ T+R GR +P +LD + V+ YGS P+ QVANV+V E RM+ + W+ Sbjct: 11 KMTKTINNLDGELATIRAGRANPHVLDKLTVDYYGSPTPIQQVANVSVPEARMIQIQPWE 70 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K M+ +E+ I S+LG+NP +G +R+ PE TE+RR L K E +K++VRNI Sbjct: 71 KSMLKEIEKAILMSDLGINPTNDGSTVRLVFPELTEDRRKELAKDVKKKGEAAKVAVRNI 130 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRDG KK K + SED + LE+D+QKITD I+ ID E K KEIM Sbjct: 131 RRDGNVAFKK-LKGTEVSEDEIKDLEDDLQKITDKYIEKIDKMVEVKTKEIM 181 >gi|126657954|ref|ZP_01729107.1| ribosome releasing factor [Cyanothece sp. CCY0110] gi|126620894|gb|EAZ91610.1| ribosome releasing factor [Cyanothece sp. CCY0110] Length = 181 Score = 147 bits (371), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 71/178 (39%), Positives = 113/178 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++KD M ++ ++ T+RTGR + S+LD V VE YG+ PL Q+AN++ + + Sbjct: 2 LDDLKDNMQKSVEATQRSFNTIRTGRANASILDRVTVEYYGTETPLYQLANISTPDATTI 61 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +DK + +E+ I S++GL P +G V+R+ +P TEERR LVK+A AE+ K Sbjct: 62 MIQPYDKGSMGQIEKAIQMSDVGLTPNNDGNVIRLNIPPLTEERRKDLVKLASKMAEEGK 121 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++RNIRRD +D ++K K+ SED L++DIQK+TD + ID K+K+IM Sbjct: 122 VAIRNIRRDAIDDVRKQEKNSDISEDESRGLQDDIQKVTDQFTEKIDDLLTAKEKDIM 179 >gi|161870876|ref|YP_001600050.1| ribosome recycling factor [Neisseria meningitidis 053442] gi|161596429|gb|ABX74089.1| ribosome recycling factor [Neisseria meningitidis 053442] gi|254672753|emb|CBA06770.1| Ribosome recycling factor [Neisseria meningitidis alpha275] gi|308388405|gb|ADO30725.1| ribosome recycling factor [Neisseria meningitidis alpha710] Length = 208 Score = 147 bits (371), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 76/184 (41%), Positives = 116/184 (63%), Gaps = 1/184 (0%) Query: 2 NQVIDLQNIKD-RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 N + D+Q + +M ++ LK+++ +RTGR +LD V+VE +GS VP++QVANVT+ Sbjct: 23 NMINDIQKTAEGKMQRSVEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVANVTL 82 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 L+ R + V ++ M VE+ I +SNLGLNP G ++R+P+P TEERR L+KV Sbjct: 83 LDARTIGVKPFEGNMAVKVEKAIRDSNLGLNPAAVGDLIRVPMPMLTEERRKDLIKVVRG 142 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE+ ++S+RN+RRD DH+KK K + SED E +QK+TD I D K+ Sbjct: 143 EAEEGRVSIRNVRRDANDHIKKLLKDKEISEDEARRGEEAVQKLTDKYITEADKLLTAKE 202 Query: 181 KEIM 184 +++M Sbjct: 203 EDLM 206 >gi|330504241|ref|YP_004381110.1| ribosome recycling factor [Pseudomonas mendocina NK-01] gi|328918527|gb|AEB59358.1| ribosome recycling factor [Pseudomonas mendocina NK-01] Length = 185 Score = 147 bits (370), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 73/177 (41%), Positives = 114/177 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ L +++ ++RTGR PS+LD +KV A+GS +PLNQVA +TV + R L Sbjct: 7 KDAQERMSKSLEALGRNLASIRTGRAHPSILDSIKVPAWGSDMPLNQVAAITVEDARTLK 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + DK + A++E+ I S+LGLNP G +R+P+P TEE R K A AE +K+ Sbjct: 67 IVAHDKNLSAAIEKAILTSDLGLNPSSAGTTIRVPMPALTEETRKGYTKQARGVAEDAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +VRN+RRD + LKK K+ + SED +++QKITD I ++D E K+ ++M Sbjct: 127 AVRNVRRDALAELKKLSKAKEISEDEERRAADELQKITDKFIGDVDKALEVKEADLM 183 >gi|163786583|ref|ZP_02181031.1| ribosome releasing factor [Flavobacteriales bacterium ALC-1] gi|159878443|gb|EDP72499.1| ribosome releasing factor [Flavobacteriales bacterium ALC-1] Length = 184 Score = 147 bits (370), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 78/174 (44%), Positives = 109/174 (62%), Gaps = 4/174 (2%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K+ M I L+K ++ +R G+ SPSML V V+ YGS PL+QVANV + R + V Sbjct: 13 KEAMDSAIKHLEKQLINIRAGKASPSMLGSVMVDYYGSQTPLSQVANVNTPDGRTISVQP 72 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 W+K M+ +ERGI +NLG NP+ G+++ I VP TEERR L K A A E +KI +R Sbjct: 73 WEKSMLQEIERGIMVANLGFNPMNNGEMVIINVPPLTEERRRDLAKQAKAETEDAKIGIR 132 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 N R+D M+ + KS SED+ + E D+Q++TDS +K ID + K+KEIM Sbjct: 133 NARKDAMNDI----KSTDVSEDLQKNAEIDVQELTDSYVKRIDDILDLKEKEIM 182 >gi|325262932|ref|ZP_08129668.1| ribosome recycling factor [Clostridium sp. D5] gi|324032026|gb|EGB93305.1| ribosome recycling factor [Clostridium sp. D5] Length = 183 Score = 147 bits (370), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 73/178 (41%), Positives = 113/178 (63%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ +++M T+ L ++ T+R GR +P +LD + V+ YG+ P+ QVANV+V E RM+ Sbjct: 5 LKVYEEKMTKTVENLNSELATIRAGRANPHVLDRLSVDYYGTPTPIQQVANVSVPEARMI 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + W+K ++ +E+ I+ S++G+NP +G +R+ PE TEERR LVK E +K Sbjct: 65 QIQPWEKSLLKEIEKAINMSDIGINPTNDGNTIRLVFPELTEERRKELVKDVKKKGEAAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++VRNIRRDG + KK K G+ SED + LE +QK+TD I +D E K KE++ Sbjct: 125 VAVRNIRRDGNEAFKK-LKGGEISEDGIKDLEESLQKMTDKFIAKVDGCVETKSKEVL 181 >gi|293605059|ref|ZP_06687452.1| ribosome recycling factor [Achromobacter piechaudii ATCC 43553] gi|292816561|gb|EFF75649.1| ribosome recycling factor [Achromobacter piechaudii ATCC 43553] Length = 186 Score = 147 bits (370), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 75/172 (43%), Positives = 111/172 (64%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM ++ LK ++ +RTGR +LD V+VE YGS VP+ QVANV +++ R + V ++ Sbjct: 13 RMAKSLDTLKINLGKIRTGRAHTGILDHVQVEYYGSPVPVGQVANVNLVDARTISVQPYE 72 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K M +E+ I ES+LGLNPI G +R+P+P TEERR L KV + E +KI+VRN+ Sbjct: 73 KHMAGPIEKAIRESDLGLNPISMGDTIRVPMPALTEERRRDLTKVVRSEGEDAKIAVRNL 132 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RR+ + LKK K + SED ++D+QK+TD ++ +ID +K+ EIM Sbjct: 133 RREANEALKKLVKDKEISEDDERRAQDDVQKLTDRSVADIDKMVVQKEAEIM 184 >gi|110834007|ref|YP_692866.1| ribosome recycling factor [Alcanivorax borkumensis SK2] gi|123050546|sp|Q0VQF4|RRF_ALCBS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|110647118|emb|CAL16594.1| Ribosome recycling factor [Alcanivorax borkumensis SK2] Length = 185 Score = 147 bits (370), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 73/176 (41%), Positives = 111/176 (63%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 + + RM ++ L M +RTGR PS+LD + +E YG+ PLNQ+ N++V E R L + Sbjct: 8 DAQSRMKKSLEALDTAMKRVRTGRAHPSLLDNITIEYYGAETPLNQMGNISVEEGRTLTI 67 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 S +DK ++ +ER I S+LGLNP G ++R+P+P TEE R LVKV A AE++++S Sbjct: 68 SPFDKSLIPQIERAILMSDLGLNPSTSGTLIRLPLPPLTEETRRDLVKVVRAEAEQARVS 127 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +RNIRRD LK+ K + SED E IQ++TD + ++ +EK++E+M Sbjct: 128 IRNIRRDANSDLKELLKEKEISEDEQRRGEEQIQQLTDKMVAEVEGVLKEKEEELM 183 >gi|261400102|ref|ZP_05986227.1| ribosome recycling factor [Neisseria lactamica ATCC 23970] gi|269210329|gb|EEZ76784.1| ribosome recycling factor [Neisseria lactamica ATCC 23970] Length = 185 Score = 147 bits (370), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 75/180 (41%), Positives = 115/180 (63%), Gaps = 1/180 (0%) Query: 6 DLQNIKD-RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D+Q + +M ++ LK+++ +RTGR +LD V+VE +GS +P++QVANVT+L+ R Sbjct: 4 DIQKTAEGKMQRSVEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMIPVSQVANVTLLDAR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 + V ++ M A VE+ I +SNLGLNP G ++R+P+P TEERR L+KV AE+ Sbjct: 64 TIGVKPFEGNMAAKVEKAIRDSNLGLNPASVGDLIRVPMPMLTEERRKDLIKVVRGEAEE 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++S+RN+RRD DH+KK K + SED E +QK+TD I D K++++M Sbjct: 124 GRVSIRNVRRDANDHIKKLLKDKEISEDEARRGEEAVQKLTDKYIAEADKLLTAKEEDLM 183 >gi|241760709|ref|ZP_04758801.1| ribosome recycling factor [Neisseria flavescens SK114] gi|241318890|gb|EER55416.1| ribosome recycling factor [Neisseria flavescens SK114] Length = 185 Score = 147 bits (370), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 74/172 (43%), Positives = 110/172 (63%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M ++ LK ++ +RTGR +LD V+VE +GS VP++QVANVT+L+ R + V ++ Sbjct: 12 KMQRSLEVLKDNLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVANVTLLDARTIGVKPFE 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 M A VE+ I +SNLGLNP G ++R+P+P TEERR L+KV AE+ ++S+RN+ Sbjct: 72 SNMAAKVEKAIRDSNLGLNPASVGDLIRVPMPMLTEERRKDLIKVVRGEAEEGRVSIRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD DH+KK K + SED E +QK+TD I D K++++M Sbjct: 132 RRDANDHIKKLLKDKEISEDEARRGEEAVQKLTDKYIAEADKLLAAKEEDLM 183 >gi|172038505|ref|YP_001805006.1| ribosome recycling factor [Cyanothece sp. ATCC 51142] gi|226749927|sp|B1X0Q1|RRF_CYAA5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|171699959|gb|ACB52940.1| ribosome recycling factor [Cyanothece sp. ATCC 51142] Length = 182 Score = 147 bits (370), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 71/178 (39%), Positives = 113/178 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++K+ M ++ ++ T+RTGR + S+LD V VE YG+ PL Q+AN++ + + Sbjct: 3 LDDLKENMQKSVEATQRSFNTIRTGRANASILDRVTVEYYGTETPLYQLANISTPDATTI 62 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +DK + +E+ I S++GL P +GQV+R+ +P TEERR LVK+A AE+ K Sbjct: 63 MIQPYDKGSMGQIEKAIQMSDVGLTPNNDGQVIRLNIPPLTEERRKDLVKLASKMAEEGK 122 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++RNIRRD +D ++K K+ SED L++DIQK+TD ID K+K+IM Sbjct: 123 VAIRNIRRDAIDDVRKQEKNSDISEDESRGLQDDIQKVTDQFTDKIDELLAAKEKDIM 180 >gi|163849097|ref|YP_001637141.1| ribosome recycling factor [Chloroflexus aurantiacus J-10-fl] gi|222527070|ref|YP_002571541.1| ribosome recycling factor [Chloroflexus sp. Y-400-fl] gi|189044049|sp|A9WAG2|RRF_CHLAA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|254809502|sp|B9LEM3|RRF_CHLSY RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|163670386|gb|ABY36752.1| ribosome recycling factor [Chloroflexus aurantiacus J-10-fl] gi|222450949|gb|ACM55215.1| ribosome recycling factor [Chloroflexus sp. Y-400-fl] Length = 185 Score = 147 bits (370), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 72/164 (43%), Positives = 110/164 (67%) Query: 21 LKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVE 80 L+ + ++RTGR S ++++ + VEAYG +PLNQ+AN++V EPR++V+ +D M+ ++E Sbjct: 20 LRHHLASIRTGRASSALVEHLHVEAYGMTMPLNQLANISVPEPRLIVIQPYDANMIKAIE 79 Query: 81 RGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHL 140 + I +S+LGLNP +G+V+R+PVP TEERR LVK+ E+ KISVRN RRD +D L Sbjct: 80 KAIQQSDLGLNPSNDGRVIRLPVPPLTEERRRELVKMVRHRVEEVKISVRNQRRDAIDDL 139 Query: 141 KKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 KK SED + + IQ++TD + +D EK+ E+M Sbjct: 140 KKLEAEKLISEDELHRGQERIQQLTDRCTRELDQIGAEKEAEVM 183 >gi|325270332|ref|ZP_08136937.1| ribosome recycling factor [Prevotella multiformis DSM 16608] gi|324987276|gb|EGC19254.1| ribosome recycling factor [Prevotella multiformis DSM 16608] Length = 207 Score = 147 bits (370), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 76/191 (39%), Positives = 121/191 (63%), Gaps = 8/191 (4%) Query: 1 MNQVIDLQNIK-------DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLN 53 +N ID+ ++K +RM +L ++ +R GR + ++LD V+V++YGS VPLN Sbjct: 16 INSTIDMLDVKQTLKDAGERMEMAAMYLGDELQRIRAGRANVAILDGVRVDSYGSKVPLN 75 Query: 54 QVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLA 113 QVA V V + R + + WD++ + +E+ I +S++G+ P G+++R+ +P+ TEERR Sbjct: 76 QVATVMVPDARTIAIKPWDRKAIKDIEKAIMDSDVGITPENNGEMIRLNLPQPTEERRRE 135 Query: 114 LVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNID 173 LVK + E++K+ +RN+R D D LKK+ K G SED END+QKI D IK +D Sbjct: 136 LVKQCNKIGERTKVEIRNVRSDIKDKLKKAIKDG-LSEDNEKDAENDLQKIHDKYIKQVD 194 Query: 174 SFFEEKKKEIM 184 + +EK+KEIM Sbjct: 195 ALLDEKQKEIM 205 >gi|227892608|ref|ZP_04010413.1| ribosome recycling factor [Lactobacillus ultunensis DSM 16047] gi|227865593|gb|EEJ73014.1| ribosome recycling factor [Lactobacillus ultunensis DSM 16047] Length = 185 Score = 147 bits (370), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 68/179 (37%), Positives = 118/179 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ ++ M +I +K + ++R G + ++LD V+VE YG+ PL Q++++T+ EPR+L Sbjct: 6 IKKAQENMDKSIKVYQKKLASIRAGVANAALLDNVEVEYYGAPTPLTQMSSITIPEPRVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +D+ + ++E + SNLGL P +G+V+R+ +P+ T ERR + K YAE++K Sbjct: 66 LITPYDQSSLDNIEHALLASNLGLTPANDGKVIRLVIPQLTGERREEIAKEVGKYAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 I+VRN+RRD M+ LK+ K+G +ED +LE +QK+TD K ID ++K+KEI Sbjct: 126 IAVRNVRRDAMNSLKRDEKNGDITEDEQRNLEKQVQKVTDDAAKKIDQLADDKRKEITQ 184 >gi|146328643|ref|YP_001209628.1| ribosome recycling factor [Dichelobacter nodosus VCS1703A] gi|166230785|sp|A5EV26|RRF_DICNV RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|146232113|gb|ABQ13091.1| ribosome recycling factor [Dichelobacter nodosus VCS1703A] Length = 185 Score = 147 bits (370), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 80/186 (43%), Positives = 114/186 (61%), Gaps = 1/186 (0%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M Q I L++ + RM ++ L+ D+ +RTGR + S+LD ++VE YG+ VPL+Q ANV V Sbjct: 1 MTQEI-LKDTQSRMKKSVQTLEADLTKIRTGRANVSLLDHIEVEYYGAMVPLSQAANVNV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R L + +W+++MVA +E+ I S+LGL P GQ + I +P TEERR +VKV Sbjct: 60 TDHRTLSIQIWERDMVAKIEKAIINSDLGLTPNTAGQNIHINLPPLTEERRKEMVKVVKN 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E++KI+VRNIRRD L K + SED E +IQKITD + ID K+ Sbjct: 120 EGEQAKIAVRNIRRDANQSLSKLLTQKEISEDEQRKSEEEIQKITDHFVAEIDKVLMAKE 179 Query: 181 KEIMHF 186 KE+M Sbjct: 180 KELMEL 185 >gi|94676465|ref|YP_588960.1| ribosome recycling factor [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|190360234|sp|Q1LSV4|RRF_BAUCH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|94219615|gb|ABF13774.1| ribosome recycling factor [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 185 Score = 147 bits (370), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 74/179 (41%), Positives = 118/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ + RM + K ++ LRTGR +P++LD +KV+ YGS +PL Q+AN+ V + R LV Sbjct: 7 QDAEVRMEKCLETFKNNISKLRTGRANPNLLDNIKVDYYGSIMPLRQLANIIVEDTRTLV 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++++D+ ++ VE+ I S+LGL P + G ++R+ +P TEERR L+K+ AE+ KI Sbjct: 67 ITLFDQSIIKRVEKAIIISDLGLTPDLSGTIIRVQLPSLTEERRRNLIKIVRNEAEQGKI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRNIRRD DH+K K+ S D +++IQKIT++ I+ +D EK++E++ F Sbjct: 127 SVRNIRRDANDHIKILLKNKAISIDEERRSQSEIQKITEAWIRRLDQILSEKERELIDF 185 >gi|225021116|ref|ZP_03710308.1| hypothetical protein CORMATOL_01128 [Corynebacterium matruchotii ATCC 33806] gi|224946116|gb|EEG27325.1| hypothetical protein CORMATOL_01128 [Corynebacterium matruchotii ATCC 33806] Length = 205 Score = 147 bits (370), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 69/178 (38%), Positives = 113/178 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++ M T+ ++++ T+RTGR +P+M + V + YG P+ Q+A V+V E RM+ Sbjct: 26 LLECEEHMSTTVDRTREELTTIRTGRANPAMFNGVVADYYGVPTPITQMATVSVPEARMM 85 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ ++ M+ +E I S+LG+NP +GQVLR+ +P+ TEERR +VK+A + E K Sbjct: 86 LIKPYEMSMMGVIENAIRNSDLGVNPTNDGQVLRVTIPQLTEERRRDMVKLAKSKGEDGK 145 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 I++RN+RR GMD LKK K G A ED V + E ++ K+T + +D ++K+ E+M Sbjct: 146 IAIRNVRRKGMDQLKKIHKDGDAGEDEVQAAEKELDKVTQKYVAAVDEVVQKKEAELM 203 >gi|297571182|ref|YP_003696956.1| ribosome recycling factor [Arcanobacterium haemolyticum DSM 20595] gi|296931529|gb|ADH92337.1| ribosome recycling factor [Arcanobacterium haemolyticum DSM 20595] Length = 185 Score = 147 bits (370), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 72/180 (40%), Positives = 111/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++MG I + D +R+GR +P + + V+ YG+ PL Q+A V+V E R + Sbjct: 6 LLEAEEKMGKAIEVAQSDFSKIRSGRANPELFTSLVVDYYGAPTPLQQLATVSVPEARTV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +D+ + +ER I ES+LG+NP +GQVLRI +P TEERR VK+A AE ++ Sbjct: 66 LISPYDRSAMKDIERAIQESDLGVNPTDDGQVLRINLPALTEERRREYVKLAKGKAEDAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 IS+R IRR + L K +K G A ED V E +++ +T ++N+DS E K+KE+M Sbjct: 126 ISIRAIRRKAKETLDKIKKDGDAGEDDVERAEKELESLTKKFVENVDSLLESKEKELMEI 185 >gi|257061312|ref|YP_003139200.1| ribosome recycling factor [Cyanothece sp. PCC 8802] gi|256591478|gb|ACV02365.1| ribosome recycling factor [Cyanothece sp. PCC 8802] Length = 181 Score = 147 bits (370), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 74/178 (41%), Positives = 116/178 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++D M ++ ++ T+RTGR + S+LD V VE YG PLNQ+AN+T + + Sbjct: 2 LAELEDNMQKSVEATQRSFNTIRTGRANASLLDRVIVEYYGMETPLNQLANITTPDATTI 61 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + +DK + ++E+ I+ S+LGL P +G+V+R+ +P TEERR LVK+A AE+ K Sbjct: 62 NILPYDKGSMGAIEKAINLSDLGLTPNNDGKVIRLNIPPLTEERRKELVKLAGKLAEEGK 121 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++RNIRRDG+D ++K K+ SED +L+++IQKITD ID + K+K+IM Sbjct: 122 VAIRNIRRDGIDTVRKQEKNNDISEDESRNLQDEIQKITDKFTTKIDELLKVKEKDIM 179 >gi|325281134|ref|YP_004253676.1| Ribosome-recycling factor [Odoribacter splanchnicus DSM 20712] gi|324312943|gb|ADY33496.1| Ribosome-recycling factor [Odoribacter splanchnicus DSM 20712] Length = 187 Score = 147 bits (370), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 74/174 (42%), Positives = 109/174 (62%), Gaps = 1/174 (0%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K++M + + L+ ++ +R G+ +P +L+ V V+ YGS PL+QVAN+T +PR + V Sbjct: 13 KEQMQNALVHLENELAKIRAGKANPKILNDVLVDYYGSPTPLSQVANITAPDPRTIAVQP 72 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 W+K M+ +++ I +NLG NP G+V+RI VP T ERR LVK + E +K+S+R Sbjct: 73 WEKNMLGPIQKAIMNANLGFNPDNNGEVVRINVPPLTAERRKELVKQSKGVGETAKVSIR 132 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 N RRD +D KK KSG ED E+++QKITDS K ID K+K+IM Sbjct: 133 NARRDAIDEFKKMVKSG-LPEDEAKDAEDEVQKITDSYNKKIDEILTAKEKDIM 185 >gi|303236901|ref|ZP_07323480.1| ribosome recycling factor [Prevotella disiens FB035-09AN] gi|302483069|gb|EFL46085.1| ribosome recycling factor [Prevotella disiens FB035-09AN] Length = 186 Score = 147 bits (370), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 75/178 (42%), Positives = 116/178 (65%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++RM +L + + +R GR + ++LD V+V +YGS VPLNQVA+VTV +PR + Sbjct: 8 LSEAEERMEMAAMYLDEQLQRIRAGRANVAILDGVRVNSYGSVVPLNQVASVTVPDPRTI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK+ + +E+ I +S++G+ P G+++R+ +P+ TEERR LVK ++ E++K Sbjct: 68 AIKPWDKKAIKDIEKAIMDSDVGITPDNNGEIIRLSLPQPTEERRRDLVKQSNKIGERTK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 + VRN+R D D KK+ K G SED+ E ++QKI D IK ID+ EK+KEIM Sbjct: 128 VEVRNVRSDIKDKFKKAIKDG-LSEDLEKDAEEELQKIHDKYIKKIDALLVEKEKEIM 184 >gi|89092092|ref|ZP_01165047.1| ribosome recycling factor [Oceanospirillum sp. MED92] gi|89083827|gb|EAR63044.1| ribosome recycling factor [Oceanospirillum sp. MED92] Length = 185 Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 73/179 (40%), Positives = 112/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ +RM ++ L + +RTGR PS+L+ ++V YGS VPL+QVAN++V + R L Sbjct: 7 QDATERMQKSVEALVNNFKKIRTGRAHPSILEGIQVSYYGSDVPLSQVANISVEDGRTLS 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + W+K MV +E+ I S+LGLNP G+ +R+P+P TEE R +K A A AE +++ Sbjct: 67 IVPWEKPMVPVIEKAIMTSDLGLNPATAGENIRVPMPPLTEETRKGYIKQARAEAENARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD LK K + +ED E+ +QKITD + +DS E+K+K++M Sbjct: 127 AIRNIRRDANGDLKDLLKEKEITEDDQRRGEDQVQKITDKHVAEVDSLLEQKEKDLMEI 185 >gi|327392800|dbj|BAK10222.1| ribosome recycling factor Frr [Pantoea ananatis AJ13355] Length = 173 Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 74/173 (42%), Positives = 111/173 (64%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M + K + +RTGR SPS+LD + VE YG+ PL Q+A+VTV + R L ++V+D+ Sbjct: 1 MDKCVEAFKTTISKVRTGRASPSLLDGIIVEYYGTPTPLRQLASVTVEDSRTLKINVFDR 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 + +VE+ I S+LGLNP G +R+P+P TEERR L+K+ AE+ ++SVRN+R Sbjct: 61 SLGPAVEKAIMASDLGLNPNSAGSDIRVPLPALTEERRKDLIKIVRGEAEQGRVSVRNVR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RD D +K K + SED +++IQK+TD+ IK +D+ EK+ E+M F Sbjct: 121 RDANDKIKALLKDKEISEDDERRSQDEIQKMTDAHIKKVDAALAEKEAELMDF 173 >gi|284044967|ref|YP_003395307.1| ribosome recycling factor [Conexibacter woesei DSM 14684] gi|283949188|gb|ADB51932.1| ribosome recycling factor [Conexibacter woesei DSM 14684] Length = 185 Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 68/179 (37%), Positives = 116/179 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 LQ+ ++RM ++ + + ++RTGR +P++LD + VE YG++ PL Q+A + E RML Sbjct: 6 LQDARERMSKSVESTRHEFGSVRTGRATPALLDRIMVEYYGANTPLKQLATINAPEARML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V +DK + ++E+ I ES++GL P +G ++R+ +PE TEERR LVKV AE+ + Sbjct: 66 SVQPFDKSSIKAIEKAIMESDVGLTPNNDGNLIRLSIPELTEERRRQLVKVVRNIAEEGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 I +RN+RRD M L++ R +G+ D E ++QK+TD + +++F + K++EI+ Sbjct: 126 IGIRNVRRDTMHDLRELRDAGEVGADDEHRAEAELQKLTDEKVGELETFLKNKEEEILE 184 >gi|295098990|emb|CBK88079.1| ribosome recycling factor [Eubacterium cylindroides T2-87] Length = 181 Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 77/176 (43%), Positives = 116/176 (65%), Gaps = 3/176 (1%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 ++RM I L+ ++ T+RTGR S +L+ V+V+ YGS +P+NQ++++ V+E LVV Sbjct: 9 EERMLKAIENLESNLKTIRTGRASSQILERVQVDYYGSMMPINQLSSIQVVEGTQLVVKP 68 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +D+ ++ SV I +NLGLNP VE V+RI VP+ T+ERR L K A Y E++K+++R Sbjct: 69 YDRSIIKSVGHAIQAANLGLNPQVEADVIRILVPQLTQERREQLAKDAQKYGEEAKVAIR 128 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 NIRRD D KK+++ +D A LE D QK+TD IK ++ EKKKEI++ Sbjct: 129 NIRRDANDATKKNKEL--TEDDRKAELE-DSQKLTDDYIKQVEQIVNEKKKEILNV 181 >gi|325957056|ref|YP_004292468.1| ribosome recycling factor [Lactobacillus acidophilus 30SC] gi|325333621|gb|ADZ07529.1| ribosome recycling factor [Lactobacillus acidophilus 30SC] Length = 185 Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 68/179 (37%), Positives = 116/179 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ ++ M +I +K + ++R G + ++LD V+V+ YG+ PL Q++++T+ EPR+L Sbjct: 6 IKKAQENMDKSIKVYQKKLASIRAGVANAALLDNVQVQYYGAPTPLTQMSSITIPEPRVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +D+ + +E + SNLGL P +G+V+R+ +P+ T ERR + K YAE++K Sbjct: 66 LITPYDQNSLDDIEHALLASNLGLTPANDGKVIRLVIPQLTGERREEIAKEVGKYAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 I+VRN+RRD M+ LK+ K G +ED +LE +QK+TD K ID +EK+KEI Sbjct: 126 IAVRNVRRDAMNSLKREEKDGDITEDEQRNLEKQVQKVTDDAAKKIDQLADEKRKEITQ 184 >gi|325267098|ref|ZP_08133767.1| ribosome recycling factor [Kingella denitrificans ATCC 33394] gi|324981451|gb|EGC17094.1| ribosome recycling factor [Kingella denitrificans ATCC 33394] Length = 185 Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 71/174 (40%), Positives = 112/174 (64%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 +++M ++ L++++ +RTGR +LD V VE +GS VP++QV NVT+L+ R + V Sbjct: 10 ENKMQRSLEVLRENLAKVRTGRAHTGLLDQVTVEYWGSEVPVSQVGNVTLLDARTIGVKP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 ++ M A +E+ I +SNLGLNP G ++R+P+P TEERR L+KV AE ++S+R Sbjct: 70 FESNMAAKIEKAIRDSNLGLNPSSVGDLIRVPMPMLTEERRKDLIKVVRGEAEDGRVSIR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 N+RRD DH+KK K + SED E +QK+TD I ++D K++++M Sbjct: 130 NVRRDANDHVKKLLKDKEISEDEARRAEESVQKLTDKYIADVDKMLAAKEEDLM 183 >gi|332532243|ref|ZP_08408124.1| ribosome recycling factor [Pseudoalteromonas haloplanktis ANT/505] gi|332038341|gb|EGI74786.1| ribosome recycling factor [Pseudoalteromonas haloplanktis ANT/505] Length = 185 Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 73/182 (40%), Positives = 112/182 (61%), Gaps = 1/182 (0%) Query: 6 DLQ-NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D+Q + + RM +++ L + +RTGR P++LD + V YG+ PLNQVANVT+ + R Sbjct: 4 DIQKDAQARMQKSVTALGSQLSKIRTGRAHPAILDGIMVSYYGAPTPLNQVANVTIEDSR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 L + V+DK + +VE+ I S+LGLNP+ G V+R+P+P TEERR L+K+ E Sbjct: 64 TLAIGVFDKSLAQAVEKAIMASDLGLNPMSAGTVIRVPLPPLTEERRKDLIKIVRGEVEG 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++++RNIRRD +K K + SED ++ IQK+TD IK +D+ K+ E+M Sbjct: 124 GRVAIRNIRRDANGDVKGLLKDKEISEDEARQSDDAIQKLTDKFIKEMDTLLAAKEAELM 183 Query: 185 HF 186 Sbjct: 184 EI 185 >gi|218283542|ref|ZP_03489532.1| hypothetical protein EUBIFOR_02122 [Eubacterium biforme DSM 3989] gi|218215810|gb|EEC89348.1| hypothetical protein EUBIFOR_02122 [Eubacterium biforme DSM 3989] Length = 181 Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 75/180 (41%), Positives = 113/180 (62%), Gaps = 3/180 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L N +++M I L+ ++ +RTGR S ML+ V+VE YG+ P+NQ+A ++V+E L Sbjct: 5 LLNAEEKMMGAIDNLESNLRQIRTGRASGQMLERVQVEYYGAMTPINQIAQISVVEGTQL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV +D+ +V + I +NLGLNP E V+RI VP+ TE+RR L K A Y E++K Sbjct: 65 VVKPYDRSIVKGIAHAIQAANLGLNPQAEADVIRIQVPQLTEDRRKELAKDAQKYGEEAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RN+RRD D +KK + + ED + QK+TD IK++DS E KKKEI++ Sbjct: 125 VAIRNVRRDANDAIKKDK---ELPEDEKKQTLEESQKLTDKYIKDVDSITETKKKEILNV 181 >gi|325282615|ref|YP_004255156.1| Ribosome-recycling factor [Deinococcus proteolyticus MRP] gi|324314424|gb|ADY25539.1| Ribosome-recycling factor [Deinococcus proteolyticus MRP] Length = 183 Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 72/177 (40%), Positives = 117/177 (66%), Gaps = 3/177 (1%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RMG +I L+ ++ LRTGR +P +L V VE +GS +P++QVA++ + R L Sbjct: 9 KDARERMGKSIEALESNLGVLRTGRANPGILKKVMVEYFGSTMPIDQVASINAPDARTLT 68 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+ WD+ + +E+ I +S+LGLNP +G ++ I +P TEERR +VK A +YAE+++I Sbjct: 69 VTPWDRGALNPIEKAIRDSDLGLNPNNKGDMIFISIPALTEERRKEMVKNAKSYAEEARI 128 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 S+RN+R+ +D +KK G ED V E ++QKITD +K +D F+ K+ EI+ Sbjct: 129 SIRNVRKSALDEVKKLDDLG---EDEVKRAEAEVQKITDEYVKKVDEVFDRKEAEIL 182 >gi|238759946|ref|ZP_04621100.1| Ribosome-recycling factor [Yersinia aldovae ATCC 35236] gi|238701853|gb|EEP94416.1| Ribosome-recycling factor [Yersinia aldovae ATCC 35236] Length = 185 Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 74/174 (42%), Positives = 114/174 (65%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM + + + +RTGR SPS+LD ++VE YG+ PL Q+AN+ V + R L ++V+D Sbjct: 12 RMEKCLEAFQNHISKIRTGRASPSILDGIQVEYYGTATPLRQLANIVVEDSRTLALTVFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + + A+VE+ I S+LGLNP G V+R+P+P TEERR L+KV A AE+ ++S+RN+ Sbjct: 72 RSLSAAVEKAIMTSDLGLNPSSAGTVIRVPLPALTEERRKDLIKVVRAEAEQGRVSIRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD + +K K + SED ++D+QK+TD+ IK +D+ K+ E+M F Sbjct: 132 RRDANEKVKALLKDKEISEDEDRRSQDDVQKLTDAFIKKVDAALAAKEAELMSF 185 >gi|259907545|ref|YP_002647901.1| ribosome recycling factor [Erwinia pyrifoliae Ep1/96] gi|224963167|emb|CAX54651.1| Ribosome recycling factor [Erwinia pyrifoliae Ep1/96] gi|283477385|emb|CAY73301.1| frr [Erwinia pyrifoliae DSM 12163] Length = 185 Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 76/174 (43%), Positives = 110/174 (63%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM + K + +RTGR SPS+LD + V+ YGS PL +A+VTV + R L ++V+D Sbjct: 12 RMEKCVEAFKNHISKIRTGRASPSILDGIMVDYYGSATPLRLLASVTVEDSRTLKINVFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + + A+VE+ I S+LGLNP G +R+P+P TEERR L+KV AE+ ++SVRN+ Sbjct: 72 RSIGAAVEKAIMTSDLGLNPSSAGSDIRVPLPALTEERRKDLIKVVRGEAEQGRVSVRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD D LK K + SED + D+QK+TD IK +D+ +K+ E+M F Sbjct: 132 RRDANDKLKALLKDKEISEDDDRRAQEDVQKMTDIFIKKMDASLADKETELMDF 185 >gi|325853886|ref|ZP_08171402.1| ribosome recycling factor [Prevotella denticola CRIS 18C-A] gi|327313933|ref|YP_004329370.1| ribosome recycling factor [Prevotella denticola F0289] gi|325484223|gb|EGC87153.1| ribosome recycling factor [Prevotella denticola CRIS 18C-A] gi|326945432|gb|AEA21317.1| ribosome recycling factor [Prevotella denticola F0289] Length = 186 Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 73/178 (41%), Positives = 115/178 (64%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +RM +L ++ +R GR + ++LD V+V++YGS VPLNQVA V V + R + Sbjct: 8 LNDAGERMEMAAMYLGDELQRIRAGRANVAILDGVRVDSYGSKVPLNQVATVMVPDARTI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WD++ + +E+ I +S++G+ P G+++R+ +P+ TEERR LVK + E++K Sbjct: 68 AIKPWDRKAIKDIEKAIMDSDVGITPENNGEMIRLNLPQPTEERRRELVKQCNKIGERTK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 + +RN+R D D LKK+ K G SED END+QK+ D IK +D+ EEK+KEIM Sbjct: 128 VEIRNVRSDIKDKLKKAIKDG-LSEDNEKDAENDLQKLHDKYIKQVDALLEEKQKEIM 184 >gi|149928181|ref|ZP_01916426.1| ribosome recycling factor [Limnobacter sp. MED105] gi|149823072|gb|EDM82312.1| ribosome recycling factor [Limnobacter sp. MED105] Length = 186 Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 72/174 (41%), Positives = 111/174 (63%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 +++M +I LK D+ +RTGR +LD V+V+ YGS VP++QVAN+++ + R +VV Sbjct: 11 EEKMVKSIESLKTDLQKVRTGRAHTGILDHVQVDYYGSMVPISQVANLSLADARTIVVQP 70 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 W+K M +VE+ I ES+LGLNP G+ +R+P+P TEERR L K E++K+++R Sbjct: 71 WEKNMANAVEKAIRESDLGLNPASMGETIRVPMPALTEERRKELTKFIKGEGEQTKVAIR 130 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 N+RRD + LK+ + SED + DIQK+TD + +D + K+ EIM Sbjct: 131 NLRRDANEALKRLVNDKEISEDDERRAQADIQKLTDKFVSEVDQVLQSKEAEIM 184 >gi|327183779|gb|AEA32226.1| ribosome recycling factor [Lactobacillus amylovorus GRL 1118] Length = 185 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 69/179 (38%), Positives = 116/179 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ ++ M +I +K + ++R G + ++LD V+VE YG+ PL Q++++T+ EPR+L Sbjct: 6 IKKAQENMDKSIKVYQKKLASIRAGVANAALLDNVQVEYYGAPTPLIQMSSITIPEPRVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +D+ + +E + SNLGL P +G+V+R+ +P+ T ERR + K YAE++K Sbjct: 66 LITPYDQNSLDDIEHALLASNLGLTPANDGKVIRLVIPQLTGERREEIAKEVGKYAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 I+VRN+RRD M+ LK+ K G +ED +LE +QK+TD K ID +EK+KEI Sbjct: 126 IAVRNVRRDAMNSLKREEKDGDITEDEQRNLEKQVQKVTDGAAKKIDQLADEKRKEITQ 184 >gi|56459950|ref|YP_155231.1| ribosome recycling factor [Idiomarina loihiensis L2TR] gi|60390231|sp|Q5QXS3|RRF_IDILO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|56178960|gb|AAV81682.1| Ribosome recycling factor [Idiomarina loihiensis L2TR] Length = 185 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 79/180 (43%), Positives = 113/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +++ KDRM ++ L+ M +RTGR PS+LD V V YG+ PL Q+AN+T + R L Sbjct: 6 IEDAKDRMEKSVESLRSQMSKVRTGRAHPSILDSVMVNYYGTDTPLKQLANITTEDSRTL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++V+DK A+VE+ I S+LGLNP G V+RIP+P TEERR LVK+ A AE + Sbjct: 66 ALTVFDKSASAAVEKAIINSDLGLNPASAGAVIRIPLPPLTEERRRDLVKIVRAEAENGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I+VRNIRRD +K K + +ED + E +IQK+TD +K ID + K+ ++M Sbjct: 126 IAVRNIRRDANGDIKDLLKEKEITEDEERNAEEEIQKLTDKFVKQIDEALKAKEADLMEI 185 >gi|149010411|ref|ZP_01831782.1| ribosome recycling factor [Streptococcus pneumoniae SP19-BS75] gi|147764892|gb|EDK71821.1| ribosome recycling factor [Streptococcus pneumoniae SP19-BS75] Length = 185 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 71/179 (39%), Positives = 114/179 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+RM + L ++ +R GR + S+LD V VE YG PLNQ+A++T+ E R+L Sbjct: 6 IEKAKERMTQSHQSLAREFGGIRAGRANASLLDRVHVEYYGVETPLNQIASITIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + +ER ++ S++G+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LVTPFDKSSLKDIERALNASDIGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRNIRRD MD KK K+ + +ED + +LE DIQK+TD +K+I+ K+KE++ Sbjct: 126 VAVRNIRRDAMDEAKKREKAKEITEDELKTLEKDIQKVTDDAVKHINDMTANKEKELLE 184 >gi|309775654|ref|ZP_07670653.1| ribosome recycling factor [Erysipelotrichaceae bacterium 3_1_53] gi|308916560|gb|EFP62301.1| ribosome recycling factor [Erysipelotrichaceae bacterium 3_1_53] Length = 180 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 77/178 (43%), Positives = 112/178 (62%), Gaps = 3/178 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++M ++ L++D+ T+RTG S+LD V+ E YGS P+NQVA+V V+E R L Sbjct: 4 LNHAEEKMKKAVTVLEEDLKTIRTGIAHASLLDHVQFEYYGSPTPINQVASVKVVEGRQL 63 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +D+ + +ER I S+ GL P +G+V+R+ VP TEERR L K AH E +K Sbjct: 64 VIKPYDRGTLKDIERAIQTSDTGLVPQSDGEVIRLNVPSLTEERRKELAKAAHKMGEDAK 123 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 I++RNIRRD D +KK + + +ED+ + IQK+TD K ID E K KEIM Sbjct: 124 IAIRNIRRDANDAVKKDK---ELTEDLKKDAQEKIQKLTDKIGKTIDQAVENKAKEIM 178 >gi|323344896|ref|ZP_08085120.1| ribosome recycling factor [Prevotella oralis ATCC 33269] gi|323094166|gb|EFZ36743.1| ribosome recycling factor [Prevotella oralis ATCC 33269] Length = 186 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 76/178 (42%), Positives = 115/178 (64%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + ++RM +L + + +R GR + ++LD V+V +YGS VPLNQVANV+V + R + Sbjct: 8 LNDAEERMQMASMYLDESLSRIRAGRANVAILDSVRVSSYGSMVPLNQVANVSVPDARTI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK+ + +E+GI +S++G+ P G+++R+ +P+ TEERR LVK + EK K Sbjct: 68 AIRPWDKKAIKDIEKGIMDSDVGITPENNGEIIRLTIPQPTEERRKELVKQCNKIGEKVK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 + VRN+R + + LKK+ K G SED E+ +QKI D IKNID+ EK KEIM Sbjct: 128 VEVRNVRSEIKEKLKKAIKEG-LSEDNEKDAEDSLQKIHDKYIKNIDALLAEKTKEIM 184 >gi|313901163|ref|ZP_07834651.1| ribosome recycling factor [Clostridium sp. HGF2] gi|312954121|gb|EFR35801.1| ribosome recycling factor [Clostridium sp. HGF2] Length = 180 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 77/178 (43%), Positives = 115/178 (64%), Gaps = 3/178 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++M ++ L++D+ T+RTG S+LD V+ E YGS P+NQVA+V V+E R L Sbjct: 4 LNHAEEKMKKAVAVLEEDLKTIRTGIAHASLLDHVQFEYYGSPTPINQVASVKVVEGRQL 63 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +D+ + +ER I S+ GL P +G+V+R+ VP TEERR L K AH E++K Sbjct: 64 VIKPYDRGTLKDIERAIQTSDTGLVPQSDGEVIRLNVPALTEERRKELAKSAHKMGEEAK 123 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 I++RNIRRD D +KK + + +ED+ + IQK+TD K+IDS + K KEIM Sbjct: 124 IAIRNIRRDANDAVKKDK---ELTEDLKKDAQEKIQKLTDKIGKSIDSAVDTKAKEIM 178 >gi|260888303|ref|ZP_05899566.1| ribosome recycling factor [Selenomonas sputigena ATCC 35185] gi|330838370|ref|YP_004412950.1| ribosome recycling factor [Selenomonas sputigena ATCC 35185] gi|260861839|gb|EEX76339.1| ribosome recycling factor [Selenomonas sputigena ATCC 35185] gi|329746134|gb|AEB99490.1| ribosome recycling factor [Selenomonas sputigena ATCC 35185] Length = 185 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 70/174 (40%), Positives = 114/174 (65%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 +RM T+ L++D +LR GR +P++LD V V+ YG P++QVA + V EPRML+++ W Sbjct: 11 ERMKKTLEALRRDFGSLRAGRATPALLDRVMVDYYGQPTPVSQVAAIAVPEPRMLMITPW 70 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 +K ++ +E+ I +S+LGL P +G +R+ +P+ T+ERR LVK + E +K+++RN Sbjct: 71 EKTILHDIEKAIMKSDLGLTPNSDGTAVRLSIPQLTQERRTELVKSLNKKTEDAKVAIRN 130 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 IRRD + +KK K+ + +ED ++D+QK+ D IK +D K+KEIM Sbjct: 131 IRRDANEQMKKLEKAKEITEDDAKKGQDDMQKLVDKYIKAVDDARVVKEKEIME 184 >gi|260437176|ref|ZP_05790992.1| ribosome recycling factor [Butyrivibrio crossotus DSM 2876] gi|292810489|gb|EFF69694.1| ribosome recycling factor [Butyrivibrio crossotus DSM 2876] Length = 184 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 73/178 (41%), Positives = 110/178 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +++M + L D +T+R GR +P +LD +KV+ YG+ P QVANV+V E RM+ Sbjct: 5 IKTYEEKMIKSCDTLAADYVTIRAGRANPHILDKLKVDYYGTPTPFQQVANVSVPEARMI 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + W+ ++ +E+ I S+LGL P +G+V+R+ PE TE+RR LVK E +K Sbjct: 65 QIQPWETSLLKEIEKAILMSDLGLTPTNDGKVIRLVFPELTEDRRKELVKDIKKKGENTK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++RNIRRD D +KK K SED V E+ IQK+TD + +D +EK KEIM Sbjct: 125 VAIRNIRRDANDAIKKLSKDTDMSEDEVKKNEDSIQKLTDKYVAQVDKMIDEKSKEIM 182 >gi|319638835|ref|ZP_07993593.1| ribosome-recycling factor [Neisseria mucosa C102] gi|317399739|gb|EFV80402.1| ribosome-recycling factor [Neisseria mucosa C102] Length = 185 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 75/180 (41%), Positives = 115/180 (63%), Gaps = 1/180 (0%) Query: 6 DLQNIKD-RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D+Q + +M ++ LK+++ +RTGR +LD V+VE +GS VP++QVANVT+L+ R Sbjct: 4 DIQKTAEGKMQRSLEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVANVTLLDAR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 + V ++ M + VE+ I +SNLGLNP G ++R+P+P TEERR L+KV AE+ Sbjct: 64 TIGVKPFESNMASKVEKAIRDSNLGLNPASVGDLIRVPMPMLTEERRKDLIKVVRGEAEE 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++S+RN+RRD DH+KK K + SED E +QK+TD I D K++++M Sbjct: 124 GRVSIRNVRRDANDHIKKLLKDKEISEDEARRGEEAVQKLTDKYIAEADKLLAAKEEDLM 183 >gi|190360294|sp|A9M3S1|RRF_NEIM0 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|325131044|gb|EGC53769.1| ribosome recycling factor [Neisseria meningitidis OX99.30304] Length = 185 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 73/174 (41%), Positives = 110/174 (63%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M ++ LK+++ +RTGR +LD V+VE +GS VP++QVANVT+L+ R + V ++ Sbjct: 12 KMQRSVEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVANVTLLDARTIGVKPFE 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 M VE+ I +SNLGLNP G ++R+P+P TEERR L+KV AE+ ++S+RN+ Sbjct: 72 GNMAVKVEKAIRDSNLGLNPAAVGDLIRVPMPMLTEERRKDLIKVVRGEAEEGRVSIRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD DH+KK K + SED E +QK+TD I D K++++M Sbjct: 132 RRDANDHIKKLLKDKEISEDEARRGEEAVQKLTDKYITEADKLLTAKEEDLMAI 185 >gi|119471164|ref|ZP_01613696.1| ribosome releasing factor [Alteromonadales bacterium TW-7] gi|119445820|gb|EAW27102.1| ribosome releasing factor [Alteromonadales bacterium TW-7] Length = 185 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 74/182 (40%), Positives = 111/182 (60%), Gaps = 1/182 (0%) Query: 6 DLQ-NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D+Q + + RM +++ L + +RTGR P++LD + V YG+ PLNQVANVT+ + R Sbjct: 4 DIQKDAQARMQKSVTALGSQLSKIRTGRAHPAILDGIMVSYYGAPTPLNQVANVTIEDSR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 L + V+DK + +VE+ I S+LGLNP+ G V+R+P+P TEERR L+K+ E Sbjct: 64 TLAIGVFDKSLAQAVEKAIMASDLGLNPMSAGTVIRVPLPPLTEERRKDLIKIVRGEVEG 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++++RNIRRD +K K SED E+ IQK+TD IK +D+ K+ E+M Sbjct: 124 GRVAIRNIRRDANGDIKALLKDKDISEDEARQGEDAIQKLTDKFIKEMDTQLTAKEAELM 183 Query: 185 HF 186 Sbjct: 184 EI 185 >gi|323489579|ref|ZP_08094806.1| ribosome recycling factor [Planococcus donghaensis MPA1U2] gi|323396710|gb|EGA89529.1| ribosome recycling factor [Planococcus donghaensis MPA1U2] Length = 185 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 69/173 (39%), Positives = 111/173 (64%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M + I +D+ ++R GR +PS+LD + ++ YGS P+NQVA +++ E R++++ +D Sbjct: 12 KMNNAIQAFSRDLASIRAGRATPSILDKLTIDYYGSPTPVNQVAGISIPEARLIMIQPYD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K ++ +E+ I +S+LGL+P +G V+R+ VP TEERR LVK AE++KI +RNI Sbjct: 72 KSVLGDIEKAILKSDLGLSPSNDGSVIRLAVPALTEERRKDLVKQVKKEAEEAKIGIRNI 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 RRD D KK K + + D + +D+QK+TD I ID ++K+K IM Sbjct: 132 RRDANDEFKKLEKKSEITVDDLRGYSDDVQKLTDDNIAKIDEMAKDKEKGIME 184 >gi|258545341|ref|ZP_05705575.1| ribosome recycling factor [Cardiobacterium hominis ATCC 15826] gi|258519444|gb|EEV88303.1| ribosome recycling factor [Cardiobacterium hominis ATCC 15826] Length = 185 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 74/174 (42%), Positives = 111/174 (63%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM ++ L+ ++ +RTGR + S+LD V+VE YGS VPL+Q ANVTV + R L + VW+ Sbjct: 12 RMEKSVKSLEHELSKIRTGRANVSLLDHVQVEYYGSMVPLSQAANVTVTDYRSLTIQVWE 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + MVA +E+ + S+LGL P GQ + I +P TEERR LVK+ E++K+++RN+ Sbjct: 72 RNMVAVIEKALINSDLGLTPNTAGQNIHINLPPLTEERRKDLVKIVRNEGEQAKVAIRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD +K+ +ASED E +IQK+TD ++ +D EK+KE+M Sbjct: 132 RRDANQSVKQLVTDKQASEDDERRAEAEIQKLTDKYVEQVDKVLAEKEKELMEV 185 >gi|312143676|ref|YP_003995122.1| ribosome recycling factor [Halanaerobium sp. 'sapolanicus'] gi|311904327|gb|ADQ14768.1| ribosome recycling factor [Halanaerobium sp. 'sapolanicus'] Length = 185 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 72/179 (40%), Positives = 111/179 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ ++RM + K+D+ T+RTGR PS+++ +K YG P+ Q+A V E R + Sbjct: 6 LKETEERMKKALEATKEDLNTIRTGRARPSLVENIKANNYGVATPIQQMAKVMAPEARQI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK + ++E+ I + NLGLNP +G V+RI +P+ TEERR L K+ H AE K Sbjct: 66 VIEPWDKNNIEAIEKAIMQENLGLNPSNDGNVIRINIPQLTEERRKELTKILHKKAEDGK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 I++RNIRRD + L+ G+ SED + +++Q +TD+ I I+S E+K+ EIM Sbjct: 126 IAIRNIRRDANEELEMLEDEGEISEDNMHRGFDNVQDLTDTYIGKIESITEKKENEIME 184 >gi|118617645|ref|YP_905977.1| ribosome recycling factor [Mycobacterium ulcerans Agy99] gi|166230805|sp|A0PQ87|RRF_MYCUA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|118569755|gb|ABL04506.1| ribosome recycling factor Frr [Mycobacterium ulcerans Agy99] Length = 185 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 68/178 (38%), Positives = 113/178 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++M +S ++DM T+RTGR +P M + ++ YG+H P+ Q+A++ V E RM+ Sbjct: 6 LFDAEEKMEKAVSVAREDMATIRTGRANPGMFSRIVIDYYGTHTPITQLASINVPEARMV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ ++ + ++E I S+LG+NP +G ++R+ VP+ TEERR LVK A E+++ Sbjct: 66 VIKPYEANQLHAIETAIRNSDLGVNPTNDGTIIRVAVPQLTEERRRDLVKQAKHKGEEAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +SVRNIRR M+ L + RK G+A ED VA E D+ K T + ID + K+ +++ Sbjct: 126 VSVRNIRRKAMEELHRIRKDGEAGEDEVARAEKDLDKSTHQYVAQIDELVKHKEGDLL 183 >gi|86605415|ref|YP_474178.1| ribosome recycling factor [Synechococcus sp. JA-3-3Ab] gi|86553957|gb|ABC98915.1| ribosome recycling factor [Synechococcus sp. JA-3-3Ab] Length = 182 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 73/182 (40%), Positives = 115/182 (63%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 ++L I++ M + ++ T+RTGR + S+LD ++VE YG PL +A++T + Sbjct: 1 MELAEIEELMNKAVQATQRSFNTVRTGRANSSLLDRIQVEYYGVPTPLKALASLTTPDSS 60 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 L++ +D +A++ER I S+LGL P +G+V+R+ +P TEERR L K AE+ Sbjct: 61 TLLIQPFDPSTLAAIERAIVASDLGLTPSNDGKVVRLTIPPLTEERRKELSKQVAKLAEE 120 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++S+RNIRRDG+D ++K K+G+ SED SL++ IQK+TD IK ID EK+KE+ Sbjct: 121 GRVSIRNIRRDGIDSVRKREKNGELSEDESKSLQDAIQKLTDRYIKKIDELLAEKEKELT 180 Query: 185 HF 186 Sbjct: 181 TL 182 >gi|322392100|ref|ZP_08065562.1| ribosome recycling factor [Streptococcus peroris ATCC 700780] gi|321145000|gb|EFX40399.1| ribosome recycling factor [Streptococcus peroris ATCC 700780] Length = 185 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 71/179 (39%), Positives = 113/179 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+RM + L ++ +R GR + S+LD + VE YG PLNQ+A++T+ E R+L Sbjct: 6 VEKAKERMTQSHHSLAREFGGIRAGRANASLLDRITVEYYGVETPLNQIASITIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + +ER ++ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +++RNIRRD MD KK K+ + +ED + +LE +IQK TD +K+ID K+KEI+ Sbjct: 126 VAIRNIRRDAMDEAKKQEKAKEITEDELKTLEKEIQKATDDAVKHIDDMTANKEKEILE 184 >gi|288800846|ref|ZP_06406303.1| ribosome recycling factor [Prevotella sp. oral taxon 299 str. F0039] gi|288332307|gb|EFC70788.1| ribosome recycling factor [Prevotella sp. oral taxon 299 str. F0039] Length = 186 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 76/178 (42%), Positives = 114/178 (64%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +RM +L++ + +R GR + ++LD V+V +YGS VPLNQVANV+ +PR + Sbjct: 8 LTDAGERMEMAALYLEEQLSRIRAGRANIAILDGVRVSSYGSMVPLNQVANVSAPDPRTI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WDK+ + +E+ I +S++G+ P G+V+R+ +P+ TEERR L K + EK K Sbjct: 68 AIAPWDKKTIRDIEKAIMDSDVGITPENNGEVIRLNIPQPTEERRRELAKQCNKIGEKIK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 I VRN+R D D LKK+ K G SED EN++QKI D IK ++ EK+KEIM Sbjct: 128 IEVRNVRSDIKDKLKKAIKDG-LSEDNEKDAENELQKIHDKYIKRVEDLLAEKEKEIM 184 >gi|291550817|emb|CBL27079.1| ribosome recycling factor [Ruminococcus torques L2-14] Length = 183 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 74/173 (42%), Positives = 111/173 (64%), Gaps = 1/173 (0%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 D+M TI+ L ++ T+R GR +P +LD + V+ YG+ P+ QVANV+V E RM+ + W Sbjct: 10 DKMTKTINNLDGELATIRAGRANPHVLDKLAVDYYGTPTPIQQVANVSVPEARMIQIQPW 69 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 +K M+ ++E+ I S++G+NP +G +R+ PE TE+RR L K E++K++VRN Sbjct: 70 EKSMLKAIEKAILTSDIGINPTNDGTSIRLVFPELTEDRRKELAKDVKKKGEEAKVAVRN 129 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +RRDG KK K + SED + LE+++QKITD + ID E K KEIM Sbjct: 130 VRRDGNVAFKK-LKGTEISEDEIKDLEDELQKITDKYVAKIDKMVEAKSKEIM 181 >gi|289423559|ref|ZP_06425360.1| ribosome recycling factor [Peptostreptococcus anaerobius 653-L] gi|289156061|gb|EFD04725.1| ribosome recycling factor [Peptostreptococcus anaerobius 653-L] Length = 185 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 72/175 (41%), Positives = 116/175 (66%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 ++++M TI LK + T+R GR + SMLD V+V+ YG+ P+NQ+A V V E R+L ++ Sbjct: 9 LEEQMEKTIEALKFEFGTIRAGRANASMLDKVRVDYYGTPTPVNQMAAVAVSEGRVLTIT 68 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 WDK ++ ++E+ I +S++G+ P +G V+R+ VP+ TEERR L K A+ +E K+ + Sbjct: 69 PWDKSVIHAIEKAISDSDIGIAPSNDGSVIRLTVPQLTEERRKELAKKANKASESFKVRI 128 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RN RRD D +KK K+ + +ED +++QK+TD IK ID +EK+K+I+ Sbjct: 129 RNERRDANDKIKKMEKAAELTEDDAKKATDEVQKMTDKYIKVIDQLTDEKEKDIL 183 >gi|238792752|ref|ZP_04636383.1| Ribosome-recycling factor [Yersinia intermedia ATCC 29909] gi|238727860|gb|EEQ19383.1| Ribosome-recycling factor [Yersinia intermedia ATCC 29909] Length = 185 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 74/174 (42%), Positives = 113/174 (64%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM + + +RTGR SPS+LD ++VE YG+ PL Q+AN+ V + R L ++V+D Sbjct: 12 RMEKCFEAFQNHISKIRTGRASPSILDGIQVEYYGTATPLRQLANIVVEDSRTLALTVFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + + A+VE+ I S+LGLNP G V+R+P+P TEERR L+KV A AE+ ++S+RN+ Sbjct: 72 RSLSAAVEKAIMTSDLGLNPSSAGTVIRVPLPALTEERRKDLIKVVRAEAEQGRVSIRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD + +K K + SED ++D+QK+TD+ IK +D+ K+ E+M F Sbjct: 132 RRDANEKVKALLKDKEISEDEDRRSQDDVQKLTDAFIKKVDAALAAKEAELMDF 185 >gi|77360957|ref|YP_340532.1| ribosome releasing factor [Pseudoalteromonas haloplanktis TAC125] gi|76875868|emb|CAI87089.1| ribosome releasing factor [Pseudoalteromonas haloplanktis TAC125] Length = 173 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 73/173 (42%), Positives = 103/173 (59%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M +++ L + +RTGR P++LD + V YGS PLNQVANVT+ + R L + V+DK Sbjct: 1 MQKSVAALGSQLSKIRTGRAHPALLDGIMVSYYGSPTPLNQVANVTIEDSRTLAIGVFDK 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 + +VE+ I S+LGLNP+ G V+R+P+P TEERR L+K+ E +++VRNIR Sbjct: 61 SLAQAVEKAIMASDLGLNPMSAGSVIRVPLPALTEERRKNLIKIVRGEVEGGRVAVRNIR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RD K K SED E IQK+TD IK +D+ K+ E+M Sbjct: 121 RDANGDFKNLLKDKDISEDEARQAEEAIQKMTDKFIKEMDTQLAAKEAELMEI 173 >gi|330720188|gb|EGG98575.1| Ribosome recycling factor [gamma proteobacterium IMCC2047] Length = 185 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 76/176 (43%), Positives = 111/176 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM + L +RTGR S+LD V V YGS PLNQVAN++V + R L+ Sbjct: 7 KDAEQRMEKALVALGAAFNRIRTGRAHASILDSVSVTYYGSETPLNQVANISVDDGRTLM 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S W+K M+ VE+ I +SNLGLNP+ G ++RIP+P TEE R LVK A A AE++++ Sbjct: 67 ISPWEKPMIPEVEKAILKSNLGLNPVTTGDIIRIPMPALTEETRKDLVKQAKAEAEQARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 SVR++RRD +K+ +K + SED ++IQKITD I I+ F K+ ++ Sbjct: 127 SVRSVRRDANSDIKELQKEKEISEDEERKASDEIQKITDKYIAKIEEAFTAKEADL 182 >gi|223933844|ref|ZP_03625811.1| ribosome recycling factor [Streptococcus suis 89/1591] gi|223897495|gb|EEF63889.1| ribosome recycling factor [Streptococcus suis 89/1591] Length = 185 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 75/175 (42%), Positives = 114/175 (65%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 +DRM + L ++ +R GR + S+LD + VE YGS PLNQ+A +TV E R+L+++ Sbjct: 10 QDRMNQSHQSLAREFSHIRAGRANASLLDRISVEYYGSPTPLNQLAGITVPEARVLLITP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +DK ++ +ER ++ S+LGL P +G V+R+ +P TEE R L K E SK+++R Sbjct: 70 FDKSILKDIERALNASDLGLTPQSDGTVIRLVIPALTEETRKNLAKDVKKVGENSKVAIR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 NIRRD MD KK+ K+ + +ED + +LE DIQK+TD IK ID +K+KE++ Sbjct: 130 NIRRDAMDEAKKAEKAKEITEDELKTLEKDIQKVTDDAIKTIDKMTADKEKELLE 184 >gi|294783615|ref|ZP_06748939.1| ribosome recycling factor [Fusobacterium sp. 1_1_41FAA] gi|294480493|gb|EFG28270.1| ribosome recycling factor [Fusobacterium sp. 1_1_41FAA] Length = 190 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 77/179 (43%), Positives = 113/179 (63%), Gaps = 2/179 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +++M TI +K+ ++R GR + +MLD VKVE YGS VPLNQV V+ E R+L Sbjct: 9 VKECEEKMLKTIEAVKERFTSIRAGRANVAMLDAVKVENYGSEVPLNQVGTVSAPEARLL 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK ++ +E+ + +NLG+ P +G+V+R+ +PE T +RR VK+A AE K Sbjct: 69 VIDPWDKTLIPKIEKALLAANLGMTPNNDGRVIRLVLPELTADRRKEYVKLAKNEAENGK 128 Query: 127 ISVRNIRRDGMDHLKK--SRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 I+VRNIR+D +HLKK K SED + E +Q +TD IK ID +K+KEI Sbjct: 129 IAVRNIRKDINNHLKKLEKDKENPISEDELKKEETHVQTLTDKYIKEIDELLAKKEKEI 187 >gi|298245133|ref|ZP_06968939.1| ribosome recycling factor [Ktedonobacter racemifer DSM 44963] gi|297552614|gb|EFH86479.1| ribosome recycling factor [Ktedonobacter racemifer DSM 44963] Length = 185 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 71/173 (41%), Positives = 113/173 (65%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM I LK+D+ ++RTGR S S+LD + V+ YG+ P+NQVA +++ E R++V+ WD Sbjct: 12 RMKRAIDALKQDLGSIRTGRASASLLDRITVDYYGAPTPVNQVATISIPEARLIVIQPWD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K++ A +E+ I +S+LG+NP +GQV+R+ +P EERR LVK H ++ K++VRN+ Sbjct: 72 KKISADIEKAIQKSDLGINPNNDGQVIRLNIPPMNEERRKDLVKSLHKKLDEHKVAVRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 RRD D L++ K + SED + +QK+TD I+ +D + K+ EI+ Sbjct: 132 RRDVQDKLREREKKKEVSEDELKRSTEKLQKLTDRFIEEMDKVGKTKELEILE 184 >gi|167766543|ref|ZP_02438596.1| hypothetical protein CLOSS21_01049 [Clostridium sp. SS2/1] gi|317498945|ref|ZP_07957228.1| ribosome recycling factor [Lachnospiraceae bacterium 5_1_63FAA] gi|167711666|gb|EDS22245.1| hypothetical protein CLOSS21_01049 [Clostridium sp. SS2/1] gi|291558581|emb|CBL37381.1| ribosome recycling factor [butyrate-producing bacterium SSC/2] gi|316893778|gb|EFV15977.1| ribosome recycling factor [Lachnospiraceae bacterium 5_1_63FAA] Length = 181 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 70/178 (39%), Positives = 110/178 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ +D+M ++ + D MT+R GR +P +LD VKV+ YG P+ QV NV+V E R + Sbjct: 2 LKQFEDKMQKSLDSMANDFMTIRAGRANPHVLDKVKVDYYGVATPVAQVGNVSVPEARTI 61 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ W+ ++ +E+ I S++G+ P +G+ +R+ P+ TEERR L K E++K Sbjct: 62 MIQPWEPNLLKEIEKAILVSDIGITPTNDGKAIRLNFPDLTEERRKELAKDVKKRGEEAK 121 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++VRNIRRD D +KK K+G ++D E+ +QK+TD IK ID + K KEIM Sbjct: 122 VAVRNIRRDANDFVKKQNKAGDLNDDQAKDEEDKVQKMTDKYIKQIDEAVDAKSKEIM 179 >gi|261379562|ref|ZP_05984135.1| ribosome recycling factor [Neisseria subflava NJ9703] gi|284798036|gb|EFC53383.1| ribosome recycling factor [Neisseria subflava NJ9703] Length = 185 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 73/172 (42%), Positives = 111/172 (64%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M ++ LK ++ +RTGR +LD V+VE +GS VP++QVANVT+L+ R + V ++ Sbjct: 12 KMQRSLEVLKDNLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVANVTLLDARTIGVKPFE 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 M + VE+ I +SNLGLNP G ++R+P+P TEERR L+KV + AE+ ++S+RN+ Sbjct: 72 SNMASKVEKAIRDSNLGLNPASVGDLIRVPMPMLTEERRKDLIKVVRSEAEEGRVSIRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD DH+KK K + SED E +QK+TD I D K++++M Sbjct: 132 RRDANDHIKKLLKDKEISEDEARRGEEAVQKLTDKYIAEADKLLAAKEEDLM 183 >gi|19704944|ref|NP_602439.1| ribosome recycling factor (RRF) [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296329199|ref|ZP_06871700.1| ribosome recycling factor [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|22001936|sp|Q8R5Z9|RRF_FUSNN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|19712846|gb|AAL93738.1| Ribosome Recycling Factor (RRF) [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296153555|gb|EFG94372.1| ribosome recycling factor [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 190 Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 74/179 (41%), Positives = 114/179 (63%), Gaps = 2/179 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +++M TI +K+ +R GR + SMLD +KVE YGS VPLNQ+ V+ E R+L Sbjct: 9 VKECEEKMVKTIEAVKEKFTAIRAGRANVSMLDGIKVENYGSEVPLNQIGTVSAPEARLL 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK +++ +E+ I +N+G+ P +G+V+R+ +PE T +RR VK+A AE K Sbjct: 69 VIDPWDKTLISKIEKAILAANIGMTPNNDGRVIRLVLPELTADRRKEYVKLAKNEAENGK 128 Query: 127 ISVRNIRRDGMDHLKK--SRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 I++RNIR+D +HLKK K SED + E ++Q +TD +K ID +K+KEI Sbjct: 129 IAIRNIRKDINNHLKKLEKDKENPISEDELKKEETNVQTLTDKYVKEIDDLLAKKEKEI 187 >gi|317121843|ref|YP_004101846.1| ribosome recycling factor [Thermaerobacter marianensis DSM 12885] gi|315591823|gb|ADU51119.1| ribosome recycling factor [Thermaerobacter marianensis DSM 12885] Length = 184 Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 70/177 (39%), Positives = 113/177 (63%), Gaps = 1/177 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ ++RM + ++++ +R GR +P++L+ ++V+ YG+ P++Q+A +T EPRML Sbjct: 6 LRQARERMEARVENFRRELAAVRAGRATPALLEKIRVDYYGTPTPIHQLATITAPEPRML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV WDK ++ +E+ I +S+LG+NP +GQV+RI +P TEE R LVK AE+ + Sbjct: 66 VVQPWDKSVMGEIEKAIAKSDLGVNPSSDGQVIRIVLPPLTEETRNELVKRVRKMAEEER 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 ++VRN+RR D LK+ G SED + + +Q++TD TI ID K+KEI Sbjct: 126 VAVRNVRRQANDDLKELEDQG-FSEDEIRRAQEKVQELTDRTIARIDELLAAKEKEI 181 >gi|326791507|ref|YP_004309328.1| ribosome recycling factor [Clostridium lentocellum DSM 5427] gi|326542271|gb|ADZ84130.1| ribosome recycling factor [Clostridium lentocellum DSM 5427] Length = 184 Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 68/179 (37%), Positives = 114/179 (63%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 +L +++M ++ ++ T+R GR +P +LD + V+ YG P+ QV N+TV E R+ Sbjct: 4 ELNKCQEKMNKSLGAFADELATIRAGRANPHVLDRLTVDYYGVATPVQQVGNITVPEARV 63 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 L + W+ ++ ++E+ I+ES+LG+NP +G+V+R+ PE TEERR L K E S Sbjct: 64 LQIQPWEGTLLKAIEKAINESDLGINPTNDGKVIRLVFPELTEERRKDLTKDIKKKGENS 123 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 KI++RNIRRD ++ KK K+ + ++D V E ++QK+TD + ID+ ++K KEI+ Sbjct: 124 KIAIRNIRRDALETFKKMEKANEMTKDEVEVAEKEVQKLTDKFVGEIDALVDKKSKEIL 182 >gi|50365372|ref|YP_053797.1| ribosome recycling factor [Mesoplasma florum L1] gi|60390251|sp|Q6F0R0|RRF_MESFL RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|50363928|gb|AAT75913.1| ribosome recycling factor [Mesoplasma florum L1] Length = 181 Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 75/174 (43%), Positives = 112/174 (64%), Gaps = 3/174 (1%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M DT+ ++ + T+RTGR S +MLD V V YG+ P+NQ A ++ EP++LV+ WD Sbjct: 11 QMEDTVVAWQEHIKTIRTGRASATMLDKVMVNYYGTPTPVNQTAQISTPEPQLLVIKPWD 70 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K ++ V I++S+L LNP+ + +V+RI +P TEE R LVK + E K+ +RNI Sbjct: 71 KTLIQEVVAAINKSDLNLNPVSDAEVVRINIPALTEEIRKDLVKKMNKELENFKVRIRNI 130 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD +D KK + SED+V +E DIQK+TDS+IK +D + K+KE+M Sbjct: 131 RRDSIDTAKKDK---SISEDVVKGIETDIQKLTDSSIKQLDEISKVKEKELMAI 181 >gi|88802057|ref|ZP_01117585.1| ribosome releasing factor [Polaribacter irgensii 23-P] gi|88782715|gb|EAR13892.1| ribosome releasing factor [Polaribacter irgensii 23-P] Length = 184 Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 73/174 (41%), Positives = 110/174 (63%), Gaps = 4/174 (2%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K+ MGD I+ L+K++ +R G+ +P+ML V V+ YGS PL+QVANV +PR + + Sbjct: 13 KEAMGDAIAHLEKELRAIRAGKATPAMLANVMVDYYGSQTPLSQVANVNTPDPRTIAIQP 72 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 W+K M+ +E+ I +NLG NP+ G ++ I VP TEERR+ L K A A AE +K+ +R Sbjct: 73 WEKSMLQPIEKAIMAANLGFNPMNNGDIIMINVPPLTEERRIGLAKQAKAEAEHAKVGIR 132 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 N R+D + +KK+ S+D+ E DIQ +TDS +K I+ K++EIM Sbjct: 133 NARKDANNDIKKT----DISDDLKKDSELDIQNLTDSFVKVIEEKLAVKEREIM 182 >gi|315127161|ref|YP_004069164.1| ribosome releasing factor [Pseudoalteromonas sp. SM9913] gi|315015675|gb|ADT69013.1| ribosome releasing factor [Pseudoalteromonas sp. SM9913] Length = 173 Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 72/173 (41%), Positives = 105/173 (60%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M +++ L + +RTGR P++LD + V YG+ PLNQVANVT+ + R L + V+DK Sbjct: 1 MQKSVAALGSQLSKIRTGRAHPAILDGIMVSYYGAPTPLNQVANVTIEDSRTLAIGVFDK 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 + +VE+ I S+LGLNP+ G V+R+P+P TEERR L+K+ E ++++RNIR Sbjct: 61 SLAQAVEKAIMASDLGLNPMSAGTVIRVPLPPLTEERRKDLIKIVRGEVEGGRVAIRNIR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RD +K K SED E+ IQKITD IK +D+ K+ E+M Sbjct: 121 RDANGDIKNLLKDKDISEDEARQAEDAIQKITDKFIKEMDTQLTAKEAELMEI 173 >gi|190360296|sp|Q21HH5|RRF_SACD2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor Length = 185 Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 73/176 (41%), Positives = 109/176 (61%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 ++RM I L +RTGR PS+LD V V YGS PL+QVANVTVL+ R L +S Sbjct: 10 EERMSRAIEALGTHFNKIRTGRAHPSILDGVMVSYYGSATPLSQVANVTVLDARTLSISP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 W+K +V +E+ I +S+LGLNP+ G ++R+P+P TEE R +K A A AE +++S+R Sbjct: 70 WEKNIVPEIEKAIMKSDLGLNPVTTGDLIRVPMPMLTEETRKGYIKRARAEAESARVSIR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 N+RRD + +K K + SED ++IQ+IT+ + +D K+K++M Sbjct: 130 NVRRDALAEVKALVKDKEISEDDERRAADEIQQITNKYVAEVDKALSAKEKDLMEI 185 >gi|32400999|gb|AAP80705.1| ribosome recycling factor [Griffithsia japonica] Length = 230 Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 69/172 (40%), Positives = 113/172 (65%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM TI +K ++RTGR SPS+LD ++V YG+ PLN +A V+V LVV +D Sbjct: 57 RMQKTIDSVKSAFNSVRTGRASPSLLDRIQVNYYGADTPLNSLATVSVSGTSTLVVEPYD 116 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K ++ +ER + ES++GL P +G +R+ +P+ T+ERR LVK + AE ++++RNI Sbjct: 117 KSCISDIERSLMESDIGLTPNSDGSTIRLSIPQLTKERRSQLVKQVKSMAEDGRVAIRNI 176 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD +D +KK K + +D +L++ +QK+TD +K I+S +++K+++IM Sbjct: 177 RRDAVDSIKKLEKKSELGKDESKTLQDRVQKLTDKYVKTIESVYKQKEEDIM 228 >gi|289522434|ref|ZP_06439288.1| ribosome recycling factor [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504270|gb|EFD25434.1| ribosome recycling factor [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 188 Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 62/167 (37%), Positives = 115/167 (68%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+++++ M + K +M +R GR P++++ +KV+ YG+ P+ Q+ +++ EPR + Sbjct: 9 LKDMRESMKKAVEHFKAEMTGIRAGRAHPALVENIKVDYYGAQTPIKQMGTISIPEPRQI 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S+WDK + +VE+ I S LG+ P V+G+ +RI +PE T+ERR+ L ++ YAE+++ Sbjct: 69 LISLWDKTAIKAVEKAIQASQLGVMPQVDGENIRITLPELTKERRVELSRLVKKYAEEAR 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNID 173 +++RNIRRD +D LKK K + SED + L+++IQ+IT+ I+ ++ Sbjct: 129 VAIRNIRRDVLDELKKQEKDSEISEDELRRLQDEIQEITNEYIEMVN 175 >gi|90022239|ref|YP_528066.1| ribosome recycling factor [Saccharophagus degradans 2-40] gi|89951839|gb|ABD81854.1| ribosome recycling factor [Saccharophagus degradans 2-40] Length = 187 Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 73/176 (41%), Positives = 109/176 (61%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 ++RM I L +RTGR PS+LD V V YGS PL+QVANVTVL+ R L +S Sbjct: 12 EERMSRAIEALGTHFNKIRTGRAHPSILDGVMVSYYGSATPLSQVANVTVLDARTLSISP 71 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 W+K +V +E+ I +S+LGLNP+ G ++R+P+P TEE R +K A A AE +++S+R Sbjct: 72 WEKNIVPEIEKAIMKSDLGLNPVTTGDLIRVPMPMLTEETRKGYIKRARAEAESARVSIR 131 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 N+RRD + +K K + SED ++IQ+IT+ + +D K+K++M Sbjct: 132 NVRRDALAEVKALVKDKEISEDDERRAADEIQQITNKYVAEVDKALSAKEKDLMEI 187 >gi|331698487|ref|YP_004334726.1| ribosome-recycling factor [Pseudonocardia dioxanivorans CB1190] gi|326953176|gb|AEA26873.1| Ribosome-recycling factor [Pseudonocardia dioxanivorans CB1190] Length = 185 Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 66/179 (36%), Positives = 114/179 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++M +S K D+ ++RTGR +PSM + V+ YG+ PLNQ+A+V+V E RM Sbjct: 6 LFDAEEKMEKAVSVAKDDLASVRTGRATPSMFSRIMVDYYGAMTPLNQLASVSVPEARMA 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV +D + ++E+ I S+LG+NP +GQ++R+ +P+ +EERR +VKVA E ++ Sbjct: 66 VVKPYDASQIGALEKAIRNSDLGVNPTNDGQIIRVVIPQLSEERRKEMVKVARGKGEDAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +++R++RR M+ L + K G+A ED V E ++Q TD + +D + K+ E++ Sbjct: 126 VTIRSLRRKAMEELHRIVKEGEAGEDEVGRAEKELQGTTDKYVHQVDELVKHKEAELLE 184 >gi|238751448|ref|ZP_04612940.1| Ribosome-recycling factor [Yersinia rohdei ATCC 43380] gi|238710315|gb|EEQ02541.1| Ribosome-recycling factor [Yersinia rohdei ATCC 43380] Length = 185 Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 75/159 (47%), Positives = 108/159 (67%) Query: 28 LRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESN 87 +RTGR SPS+LD ++VE YG+ PL Q+AN+ V + R L ++V+D+ + A+VE+ I S+ Sbjct: 27 IRTGRASPSILDGIQVEYYGTATPLRQLANIVVEDSRTLALTVFDRSLSAAVEKAIMTSD 86 Query: 88 LGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSG 147 LGLNP G V+R+P+P TEERR L+KV A AE+ ++SVRN+RRD + LK K Sbjct: 87 LGLNPSSAGTVIRVPLPALTEERRKDLIKVVRAEAEQGRVSVRNVRRDANEKLKALLKDK 146 Query: 148 KASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 + SED ++DIQK+TD IK +D+ K+ E+M F Sbjct: 147 EISEDEDRRSQDDIQKLTDIFIKKVDAALAAKEAELMDF 185 >gi|254480101|ref|ZP_05093349.1| ribosome recycling factor [marine gamma proteobacterium HTCC2148] gi|214039663|gb|EEB80322.1| ribosome recycling factor [marine gamma proteobacterium HTCC2148] Length = 185 Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 72/175 (41%), Positives = 108/175 (61%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 +RM ++ L + +RTGR PS+LD ++VE YG+ PLNQ+ANV V + R L ++ W Sbjct: 11 ERMSKSLDALSHNFNKIRTGRAHPSLLDGLRVEYYGAETPLNQMANVNVEDARTLSLTAW 70 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 DK M+ ++E+ I +S+LGLNP G+V+RIP+P TEE R ++ A AE +++SVRN Sbjct: 71 DKTMIPAIEKAIMKSDLGLNPATAGEVIRIPMPMLTEETRKGYIRQARHEAESARVSVRN 130 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD LK+ K + SED + IQK+TDS I ++ K+ ++M Sbjct: 131 ARRDANAMLKELEKDKEISEDDERRGHDGIQKVTDSYIAQVEKMLAAKEADLMEI 185 >gi|45644743|gb|AAS73131.1| predicted ribosome recycling factor [uncultured marine gamma proteobacterium EBAC20E09] Length = 184 Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 71/180 (39%), Positives = 116/180 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+++ ++M +++ LK +RTGR +P++LD + V+ YG+ P+NQ +N++V E R L Sbjct: 5 LKDLTEKMEKSVTALKNAFNKIRTGRANPAILDDINVDYYGNPTPINQTSNISVEEGRSL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+S WDK ++ +E+ I S+LGLNP G ++R+ +P TEE R +K A A AE S+ Sbjct: 65 VISPWDKNLIPEIEKAILSSDLGLNPSTSGDLIRVTMPALTEETRQDYIKQARAEAENSR 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 IS+RNIRRD + K ++S + SED + +E+ IQK TD I +DS + K+ +++ Sbjct: 125 ISIRNIRRDANNSAKDMQQSSEISEDDLRRIEDLIQKETDKFISIVDSDLKNKESDLLEI 184 >gi|332967732|gb|EGK06839.1| ribosome recycling factor [Kingella kingae ATCC 23330] Length = 185 Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 71/174 (40%), Positives = 111/174 (63%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 +++M ++ L ++ +RTGR +LD V VE +GS VP++QVANVT+L+ R + V Sbjct: 10 ENKMQRSLEVLGDNLSKVRTGRAHTGLLDQVSVEYWGSEVPISQVANVTLLDARTIGVKP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 ++ M + +E+ I +SNLGLNP G ++R+P+P TEERR L+KV AE ++S+R Sbjct: 70 FESNMASKIEKAIRDSNLGLNPAAVGDLIRVPMPMLTEERRKDLIKVVRGEAEDGRVSIR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 N+RRD DH+KK K + SED E +QK+TD I ++D K++++M Sbjct: 130 NVRRDANDHIKKLLKDKEISEDEARRGEEAVQKLTDKYIADVDKMLAAKEEDLM 183 >gi|291614111|ref|YP_003524268.1| ribosome recycling factor [Sideroxydans lithotrophicus ES-1] gi|291584223|gb|ADE11881.1| ribosome recycling factor [Sideroxydans lithotrophicus ES-1] Length = 185 Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 71/177 (40%), Positives = 110/177 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N++ +M ++ LK D+ +RTGR +LD V V+ YGS +NQVAN+T+ + R + Sbjct: 7 KNVEQKMAKSLEALKTDLGKIRTGRAHTGLLDHVMVDYYGSPTAVNQVANITLTDARTIG 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V ++K MV +E+ I +S+LGLNP G ++R+P+P TEERR L+KV + E +K+ Sbjct: 67 VQPYEKNMVGPIEKAIRDSDLGLNPATNGDLIRVPMPMLTEERRRDLIKVVKSEGEDAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +VRNIRRD + LKK K ED + D+QK+TD + ID + K+ ++M Sbjct: 127 AVRNIRRDANEQLKKLLKDKAVGEDEERRAQEDVQKLTDRFVAEIDKALQAKETDLM 183 >gi|160934097|ref|ZP_02081484.1| hypothetical protein CLOLEP_02960 [Clostridium leptum DSM 753] gi|156866770|gb|EDO60142.1| hypothetical protein CLOLEP_02960 [Clostridium leptum DSM 753] Length = 184 Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 75/186 (40%), Positives = 117/186 (62%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M QV +N +M TI+ L + +R GR +P++LD + V+ YGS +NQ+A ++V Sbjct: 1 MKQV--FENADKKMNKTINALTSEFAGIRAGRANPAVLDKIMVDYYGSPTAINQLAAISV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R L +S WD+ +V +VE+ I S+LG+NP +G+V+R+ P TE+RR +VK Sbjct: 59 TEARTLTISPWDQSVVHAVEKAIQSSDLGINPQTDGKVIRLIFPPLTEDRRRDIVKDIKK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E++K+++R+IRRD MD LK +K+G+ +ED + E +Q TD IK I+S + K+ Sbjct: 119 MEEEAKVAIRSIRRDSMDKLKALKKNGEITEDDLKDAEKKMQNQTDKFIKEIESISQVKE 178 Query: 181 KEIMHF 186 KEIM Sbjct: 179 KEIMEI 184 >gi|300870157|ref|YP_003785028.1| Ribosome recycling factor [Brachyspira pilosicoli 95/1000] gi|300687856|gb|ADK30527.1| Ribosome recycling factor [Brachyspira pilosicoli 95/1000] Length = 182 Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 77/176 (43%), Positives = 112/176 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ KDRM I+ L+ D+ +RTGR + S+LD VKVEAYGS +PL QV NV+ + + ++ Sbjct: 4 ESYKDRMEKAINSLQNDLKGIRTGRANASILDGVKVEAYGSSMPLKQVGNVSTPDAKTIM 63 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +DK +V +E+ I +++LG NP +G +RI VPE T+ERR L K E++KI Sbjct: 64 IQPFDKALVGDIEKAILKADLGFNPFNDGGNIRIMVPELTKERREELKKGVRHRGEEAKI 123 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 ++RNIRRD D +KK K +ED +LE IQ TDS IK +D K+KE+ Sbjct: 124 AIRNIRRDENDIIKKDLKDKTITEDESKNLEKKIQNDTDSYIKKVDELITSKEKEL 179 >gi|325207224|gb|ADZ02676.1| ribosome recycling factor [Neisseria meningitidis NZ-05/33] Length = 185 Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 75/182 (41%), Positives = 114/182 (62%), Gaps = 1/182 (0%) Query: 6 DLQNIKD-RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D+Q + +M ++ LK+++ +RTGR +LD V+VE +GS VP++QVANVT+L+ Sbjct: 4 DIQKTAEGKMQRSVEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVANVTLLDAC 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 + V ++ M A VE+ I +SNLGLNP G ++R+P+P TEERR L+KV AE+ Sbjct: 64 TIGVKPFEGNMAAKVEKAIRDSNLGLNPAAVGDLIRVPMPMLTEERRKDLIKVVRGEAEE 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++S+RN+RRD DH+KK K + SED E +QK+TD I D K++++M Sbjct: 124 GRVSIRNVRRDANDHIKKLLKDKEISEDEARRGEEAVQKLTDKYITEADKLLTAKEEDLM 183 Query: 185 HF 186 Sbjct: 184 AI 185 >gi|148653598|ref|YP_001280691.1| ribosome recycling factor [Psychrobacter sp. PRwf-1] gi|172048549|sp|A5WGF0|RRF_PSYWF RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|148572682|gb|ABQ94741.1| ribosome recycling factor [Psychrobacter sp. PRwf-1] Length = 184 Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 77/175 (44%), Positives = 112/175 (64%), Gaps = 1/175 (0%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 +DRM T+ L+ +RTGR P ML V V YG+ PLNQVA+V V + R L+V Sbjct: 10 EDRMKKTLEVLENAFSKVRTGRAHPGMLSGVMVSYYGADTPLNQVASVNVEDSRTLLVQP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +++ MV +V++ I E++LGLNP+ V+R+P+P TEE R + K+A AE S++S+R Sbjct: 70 FERSMVQAVDKAIREADLGLNPMT-ADVIRVPMPALTEETRRDMQKLARGEAENSRVSIR 128 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 N+RRD ++ +K+ K + SED +DIQKITD I +IDS E K+KE+M Sbjct: 129 NVRRDMLNDIKELAKEKEISEDDERRASDDIQKITDKYIASIDSKLEAKEKELME 183 >gi|312879901|ref|ZP_07739701.1| ribosome recycling factor [Aminomonas paucivorans DSM 12260] gi|310783192|gb|EFQ23590.1| ribosome recycling factor [Aminomonas paucivorans DSM 12260] Length = 185 Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 66/179 (36%), Positives = 120/179 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++++K R +I LK + +RTGR P++++ +KV+ +G+ PL Q+A V + E R + Sbjct: 6 IKDMKHRTEKSIEHLKTTLQGIRTGRAHPALVEEIKVDYFGTLTPLKQMAMVNIPESRQI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V++ WDK + ++E+ I S+LG+NP ++G+ +R+ +PE T ERR+ L K+ + Y+E++K Sbjct: 66 VIAPWDKTALKAIEKAIQASSLGVNPRIDGESIRLTLPELTRERRVELSKLVNKYSEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +++RNIRR+ ++ LKK K G SED + L+ ++Q+ TD + ++ EK KEI++ Sbjct: 126 VAIRNIRREVLEALKKMEKDGTISEDELKKLQKEVQEHTDEATRKVEQATAEKDKEILN 184 >gi|332994201|gb|AEF04256.1| ribosome recycling factor [Alteromonas sp. SN2] Length = 185 Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 74/177 (41%), Positives = 110/177 (62%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 + ++RM +IS LK +RTGR PS+LD + V YG+ PL QVANV + R L + Sbjct: 8 DAQERMDKSISALKGQFSKIRTGRAHPSLLDGIMVPYYGTDTPLKQVANVIAEDSRTLAL 67 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 +V+DK + +VE+ I +++LGLNP+ G +RIP+P TEERR L++V AE ++S Sbjct: 68 TVFDKSAIQAVEKAIMQADLGLNPMSAGGSIRIPLPPLTEERRKDLIRVVRNEAENGRVS 127 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +RNIRRD +K+ K + SED + E +IQ +T+ IK +D K+KE+M Sbjct: 128 IRNIRRDANSDVKELLKEKEISEDESRAAEENIQSLTNDFIKKVDGMLAVKEKELME 184 >gi|227549021|ref|ZP_03979070.1| ribosome recycling factor [Corynebacterium lipophiloflavum DSM 44291] gi|227078875|gb|EEI16838.1| ribosome recycling factor [Corynebacterium lipophiloflavum DSM 44291] Length = 185 Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 69/179 (38%), Positives = 113/179 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +DRM + +++++++RTGR +P+M + V + YG+ P+NQ+A V+V EPRML Sbjct: 6 LLDSEDRMSKAVEHTREELVSIRTGRANPAMFNGVVADFYGAPTPINQMATVSVPEPRML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D + + I S+LG+NP +GQV+R+ VP+ TEERR LVK A E+ K Sbjct: 66 LIKPFDMSTLNEILNAIRNSDLGVNPTDDGQVIRVTVPQLTEERRRELVKQAKQKGEEGK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +++RN+RR GM+ LKK +K G A ED V + E + K T + +D +K+ E++ Sbjct: 126 VAIRNVRRQGMEALKKIQKDGDAGEDEVKTAEQALDKTTARYVAQVDEIVSKKEAELLE 184 >gi|86606512|ref|YP_475275.1| ribosome recycling factor [Synechococcus sp. JA-3-3Ab] gi|86555054|gb|ABD00012.1| ribosome recycling factor [Synechococcus sp. JA-3-3Ab] Length = 182 Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 73/182 (40%), Positives = 114/182 (62%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 ++L I++ M + ++ T+RTGR + S+LD V+VE YG PL +A++T + Sbjct: 1 MELAEIEELMSKAVQATQRSFNTVRTGRANASLLDRVQVEYYGVPTPLKALASITTPDAS 60 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 L++ +D +A++ER I S+LGL P +G+V+R+ +P TEERR L K AE+ Sbjct: 61 TLLIQPFDPSTLAAIERAIVASDLGLTPSNDGKVVRLNIPPLTEERRKELSKQVAKLAEE 120 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++S+RNIRRD +D ++K K+G+ SED SL+ +IQK+TD IK ID EK+KE+ Sbjct: 121 GRVSIRNIRRDAIDSVRKREKNGEISEDESKSLQEEIQKLTDRYIKKIDDLLAEKEKELT 180 Query: 185 HF 186 Sbjct: 181 TL 182 >gi|153207713|ref|ZP_01946360.1| ribosome recycling factor [Coxiella burnetii 'MSU Goat Q177'] gi|154705951|ref|YP_001424018.1| ribosome recycling factor [Coxiella burnetii Dugway 5J108-111] gi|165919005|ref|ZP_02219091.1| ribosome recycling factor [Coxiella burnetii RSA 334] gi|212212246|ref|YP_002303182.1| ribosome recycling factor [Coxiella burnetii CbuG_Q212] gi|212218981|ref|YP_002305768.1| ribosome recycling factor [Coxiella burnetii CbuK_Q154] gi|189044052|sp|A9KBR6|RRF_COXBN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226749925|sp|B6J8M4|RRF_COXB1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226749926|sp|B6IZA9|RRF_COXB2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|120576409|gb|EAX33033.1| ribosome recycling factor [Coxiella burnetii 'MSU Goat Q177'] gi|154355237|gb|ABS76699.1| ribosome recycling factor [Coxiella burnetii Dugway 5J108-111] gi|165917330|gb|EDR35934.1| ribosome recycling factor [Coxiella burnetii RSA 334] gi|212010656|gb|ACJ18037.1| ribosome Recycling Factor (RRF) [Coxiella burnetii CbuG_Q212] gi|212013243|gb|ACJ20623.1| ribosome recycling factor [Coxiella burnetii CbuK_Q154] Length = 185 Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 69/174 (39%), Positives = 110/174 (63%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K RM ++ LK ++ LRTGR PS+L+ +KV+ Y PL+QVA++ + PR L ++ Sbjct: 10 KSRMEKSLGSLKTELAKLRTGRAHPSLLEHIKVDYYNVETPLSQVASIAIENPRTLSITP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 W+K MV +E+ I +++LGLNP G V+R+P+P TEERR L +V AE +++++R Sbjct: 70 WEKNMVGPIEKAIQKADLGLNPATVGMVIRVPLPPLTEERRKELARVVREEAEHARVAIR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 NIRR+ + LK+ K + SED + IQK+TD+ I +D +K+ ++M Sbjct: 130 NIRREANNDLKELMKEKEISEDEERRAQTAIQKLTDAQIAEVDKMASQKEADLM 183 >gi|54026099|ref|YP_120341.1| ribosome recycling factor [Nocardia farcinica IFM 10152] gi|60390236|sp|Q5YS64|RRF_NOCFA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|54017607|dbj|BAD58977.1| putative ribosome recycling factor [Nocardia farcinica IFM 10152] Length = 185 Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 69/179 (38%), Positives = 110/179 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++M +S K D+ T+RTGR +P M V V+ YGS P+ Q++++TV EPRM+ Sbjct: 6 LFDAEEKMEKAVSVAKDDLGTIRTGRANPGMFARVVVDYYGSPTPVTQMSSITVPEPRMV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ ++ + ++E I S+LG+NP G +LRI +P+ TEERR LVK A E +K Sbjct: 66 VIKPYEAGQLGAIETAIRNSDLGVNPTNNGDILRITIPQLTEERRRELVKQAKGKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +++RN+RR MD L + +K G+A ED V E ++ K T + ID + K+ E++ Sbjct: 126 VAIRNVRRKAMDELARIQKDGEAGEDEVGRAEKELDKTTAKYVSQIDELVKHKEAELLE 184 >gi|237741356|ref|ZP_04571837.1| ribosome Recycling Factor [Fusobacterium sp. 4_1_13] gi|229430888|gb|EEO41100.1| ribosome Recycling Factor [Fusobacterium sp. 4_1_13] Length = 190 Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 75/179 (41%), Positives = 113/179 (63%), Gaps = 2/179 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +++M TI +K+ +R GR + SMLD +KVE YGS VPLNQ+ V+ E R+L Sbjct: 9 VKECEEKMLKTIEAVKEKFTAIRAGRANVSMLDGIKVENYGSEVPLNQIGTVSAPEARLL 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK +++ +E+ + +NLG+ P +G+V+R+ +PE T +RR VK+A AE K Sbjct: 69 VIDPWDKSLISKIEKALLAANLGMTPNNDGRVIRLVLPELTADRRKEYVKLAKNEAENGK 128 Query: 127 ISVRNIRRDGMDHLKK--SRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 I+VRNIR+D +HLKK K SED + E +Q +TD +K ID +K+KEI Sbjct: 129 IAVRNIRKDINNHLKKLEKDKENPISEDELKKEETRVQTLTDKYVKEIDDLLAKKEKEI 187 >gi|262202045|ref|YP_003273253.1| ribosome recycling factor [Gordonia bronchialis DSM 43247] gi|262085392|gb|ACY21360.1| ribosome recycling factor [Gordonia bronchialis DSM 43247] Length = 185 Score = 144 bits (364), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 68/179 (37%), Positives = 112/179 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++M +S K DM ++RTGR +P+M + V +E YG+ P+ QVA++ EPR++ Sbjct: 6 LFDAEEKMEKAVSVAKDDMGSIRTGRANPAMFNKVVIEYYGAMTPVTQVASINTPEPRLV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ ++ + +E I S+LG+NP +G V+R+ VP+ TEERR LVK A E +K Sbjct: 66 VIKPYEASTLRDIETAIRNSDLGVNPTNDGNVIRVAVPQLTEERRRDLVKQAKGKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +S+RNIRR +D LK+ +K G+A ED V E ++ K T ++ +D + K+ E++ Sbjct: 126 VSIRNIRRKAVDELKRIQKDGEAGEDEVTRAEKELDKTTAGYVQQVDELVKHKENELLE 184 >gi|298370305|ref|ZP_06981621.1| ribosome recycling factor [Neisseria sp. oral taxon 014 str. F0314] gi|298281765|gb|EFI23254.1| ribosome recycling factor [Neisseria sp. oral taxon 014 str. F0314] Length = 185 Score = 144 bits (364), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 74/180 (41%), Positives = 115/180 (63%), Gaps = 1/180 (0%) Query: 6 DLQNIKD-RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D+Q + +M ++ LK+++ +RTGR +LD V+VE +GS VP++QVAN+T+++ R Sbjct: 4 DIQKTAEGKMQRSLEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVANITLVDAR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 + V ++ M A VE+ I +SNLGLNP G ++R+P+P TEERR L+KV AE+ Sbjct: 64 TIGVKPFESNMAAKVEKAIRDSNLGLNPASVGDLIRVPMPMLTEERRKDLIKVVRNEAEE 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++S+RN+RRD DH+KK K + SED E +QK+TD I D K++++M Sbjct: 124 GRVSIRNVRRDANDHIKKLLKDKEVSEDEARRGEEAVQKLTDKYISEADKILAAKEEDLM 183 >gi|261856047|ref|YP_003263330.1| ribosome recycling factor [Halothiobacillus neapolitanus c2] gi|261836516|gb|ACX96283.1| ribosome recycling factor [Halothiobacillus neapolitanus c2] Length = 185 Score = 144 bits (364), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 78/174 (44%), Positives = 107/174 (61%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM +I LK ++ +RTGR S+LD V V+ YGS VPL+QVA ++ + R L V+ W+ Sbjct: 12 RMHKSIDALKVELSKIRTGRAHVSILDHVSVDYYGSMVPLSQVAKLSAEDSRTLSVTPWE 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 KEMV +E+ I S+LGLNP G V+R+P+P TEERR L KV E +K++VRNI Sbjct: 72 KEMVGKIEKAIMTSDLGLNPSTSGLVIRVPMPALTEERRKELGKVVRTEGENAKVAVRNI 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD + LK K SED ++ IQK+TD + ID EK+KE++ Sbjct: 132 RRDANNDLKNMLKDKDISEDDERRGQDLIQKLTDQCVTEIDKLVAEKEKELLEV 185 >gi|269118716|ref|YP_003306893.1| ribosome recycling factor [Sebaldella termitidis ATCC 33386] gi|268612594|gb|ACZ06962.1| ribosome recycling factor [Sebaldella termitidis ATCC 33386] Length = 185 Score = 144 bits (364), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 68/177 (38%), Positives = 115/177 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ + +M + K ++R GR + SMLD + V+AYG+ PL+Q+ ++ E R+L Sbjct: 6 LKETETKMEKAVESTKDKFASIRAGRANVSMLDGITVDAYGAPSPLSQIGTLSAPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK ++ ++E+ I ++NLGLNP +G+++R+ VPE TEERR VK+ AE+ K Sbjct: 66 TIDPWDKSLIPAIEKAIQQANLGLNPSNDGRIIRLSVPELTEERRKEYVKMVRKEAEEGK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +++RNIR+D + L+KS K + +ED + S E+ +QK+TD K +D ++K+KE+ Sbjct: 126 VAIRNIRKDVNNKLRKSEKDSEITEDDLKSGEDSVQKLTDKFTKLVDEALDKKEKEL 182 >gi|92112699|ref|YP_572627.1| ribosome recycling factor [Chromohalobacter salexigens DSM 3043] gi|122420714|sp|Q1R030|RRF_CHRSD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|91795789|gb|ABE57928.1| ribosome recycling factor [Chromohalobacter salexigens DSM 3043] Length = 185 Score = 144 bits (364), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 74/173 (42%), Positives = 104/173 (60%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM ++ L + +RTGR PS+LD V VE YGS +PLNQVA+V V + R L V W+ Sbjct: 12 RMKKSVEALNANFHKIRTGRAHPSLLDAVTVEYYGSEMPLNQVASVNVEDARTLAVVPWE 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K MV VE+ I S+LGLNP G V+R+P+P TEE R +K A AE ++++VRN+ Sbjct: 72 KSMVPKVEKAIMTSDLGLNPAAAGNVIRVPLPPLTEETRRNYIKQARGEAENARVAVRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 RRD LK K + +ED ++IQK+TD + ID E K+ +++ Sbjct: 132 RRDANGDLKSLLKEKEITEDEERHAIDEIQKLTDKYVTEIDKLLETKEHDLLQ 184 >gi|325143201|gb|EGC65541.1| ribosome recycling factor [Neisseria meningitidis 961-5945] Length = 185 Score = 144 bits (364), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 75/182 (41%), Positives = 114/182 (62%), Gaps = 1/182 (0%) Query: 6 DLQNIKD-RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D+Q + +M ++ LK+++ +RTGR +LD V+VE +GS V ++QVANVT+L+ R Sbjct: 4 DIQKTAEGKMQRSVEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMVSVSQVANVTLLDAR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 + V ++ M A VE+ I +SNLGLNP G ++R+P+P TEERR L+KV AE+ Sbjct: 64 TIGVKPFEGNMAAKVEKAIRDSNLGLNPAAVGDLIRVPMPMLTEERRKDLIKVVRGEAEE 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++S+RN+RRD DH+KK K + SED E +QK+TD I D K++++M Sbjct: 124 GRVSIRNVRRDANDHIKKLLKDKEISEDEARRGEEAVQKLTDKYITEADKLLTAKEEDLM 183 Query: 185 HF 186 Sbjct: 184 AI 185 >gi|257126427|ref|YP_003164541.1| ribosome recycling factor [Leptotrichia buccalis C-1013-b] gi|257050366|gb|ACV39550.1| ribosome recycling factor [Leptotrichia buccalis C-1013-b] Length = 185 Score = 144 bits (364), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 71/178 (39%), Positives = 115/178 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ ++++M ++ K +R GR S SMLD V VEAYGS PLNQV V+ E R+L Sbjct: 6 LKEVEEKMQKSVENTKTKFSHVRAGRASVSMLDGVTVEAYGSPTPLNQVGTVSAPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK ++ ++E+ I ++NLG NP +G+++R+ VPE TE+RR VK+ AE+ K Sbjct: 66 VIDPWDKSLIPAIEKTILQANLGFNPSNDGKIIRLVVPELTEDRRKEYVKMVKKEAEEGK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++RN+R++ + L+K K+ + +ED + S E +QK TD I +D +K+KE++ Sbjct: 126 VAIRNVRKEVNNKLRKLEKNSEITEDELKSSEEKVQKSTDKFIAQVDEALNKKEKELL 183 >gi|226356272|ref|YP_002786012.1| ribosome recycling factor [Deinococcus deserti VCD115] gi|259494537|sp|C1CVP1|RRF_DEIDV RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226318262|gb|ACO46258.1| putative Ribosome recycling factor (Ribosome-releasing factor) (RRF) [Deinococcus deserti VCD115] Length = 183 Score = 144 bits (364), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 74/176 (42%), Positives = 115/176 (65%), Gaps = 3/176 (1%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 + ++RMG I L+ ++ LRTGR +P +L V V+ YGS +P++QVA++T + R LV+ Sbjct: 10 DARERMGKAIEALESNLSVLRTGRANPGILKKVIVDYYGSTMPIDQVASITTPDARTLVI 69 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 + WD+ + +E+ I +S+LGLNP +G + I +P TEERR LVK A YAE ++I+ Sbjct: 70 TPWDRGALGPIEKAIRDSDLGLNPNNKGDTIFISLPMLTEERRKDLVKNAKNYAEDARIA 129 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 VRNIR+ +D +KK G +D + E ++QKITD I +DS F +K++EI+ Sbjct: 130 VRNIRKHALDEVKKVEGVG---DDEIKRGEAEVQKITDEFIARVDSTFHKKEQEIL 182 >gi|116749216|ref|YP_845903.1| ribosome recycling factor [Syntrophobacter fumaroxidans MPOB] gi|166231522|sp|A0LJ66|RRF_SYNFM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|116698280|gb|ABK17468.1| ribosome recycling factor [Syntrophobacter fumaroxidans MPOB] Length = 185 Score = 144 bits (364), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 72/180 (40%), Positives = 112/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + +DRM + L+ D LRTGR S S++D ++ E YG+ LNQ+A +T+ EPR + Sbjct: 6 FADARDRMSKALDNLETDYKRLRTGRASVSLVDGIRAEYYGTPTALNQLATITIPEPRTI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WD ++ +E+ I +S LGL P+ +G+V+RI +P T +RR LVKV +E+SK Sbjct: 66 MIQPWDTSVIGEIEKSILKSELGLTPMSDGKVIRINIPVLTADRRRELVKVVKKMSEESK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD + +K +K + SED + + Q+ITD IK ID + K+KEI+ Sbjct: 126 VAVRNIRRDVNEMIKDLKKEKEISEDEQFKAQEETQRITDDFIKKIDVVYSAKEKEILEI 185 >gi|227872428|ref|ZP_03990772.1| ribosome recycling factor [Oribacterium sinus F0268] gi|227841725|gb|EEJ52011.1| ribosome recycling factor [Oribacterium sinus F0268] Length = 184 Score = 144 bits (364), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 74/173 (42%), Positives = 109/173 (63%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 ++M T L ++ T+R GR +P +LD + V+ YG+ P+ QV NV+V E R+L + W Sbjct: 10 EKMHKTHDNLMSELGTIRAGRANPHVLDRIMVDYYGTPTPIQQVGNVSVPEARILQIQPW 69 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 DK ++ +E+ I+ S LG+NP +GQV+R+ PE TEERR L K E +KI++RN Sbjct: 70 DKSVMKEIEKAINMSELGINPTNDGQVIRLVFPELTEERRKELTKDVKKKGEAAKIAIRN 129 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 IRRD MD KK K+ + +ED ++ DIQ++TD I+ ID E K KE+M Sbjct: 130 IRRDAMDLAKKLEKNAEITEDDLSRQTKDIQELTDHMIEKIDKSVEAKNKELM 182 >gi|152991582|ref|YP_001357304.1| ribosome recycling factor [Nitratiruptor sp. SB155-2] gi|166230808|sp|A6Q638|RRF_NITSB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|151423443|dbj|BAF70947.1| ribosome recycling factor Frr [Nitratiruptor sp. SB155-2] Length = 186 Score = 144 bits (363), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 71/174 (40%), Positives = 111/174 (63%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 +D M ++ LKKD TLRTGRV+ ++++ +KV+ YG+ PLNQ A+V + +V+S Sbjct: 11 RDHMQKSLDVLKKDFNTLRTGRVTTAVVENIKVDYYGAPTPLNQAASVVAADATTIVISP 70 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 WDK ++ +ER I E+N+G+NP +G +++ P T E+R A K A + EK+KI++R Sbjct: 71 WDKSLLGEIERAIQEANIGVNPNNDGDQIKLFFPPMTVEQREAEAKKAKQFGEKAKIAIR 130 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 N+RRD D +KK K +ED ++QKITD IK +D ++K++EIM Sbjct: 131 NVRRDANDKIKKLFKDKAITEDEEKRGLEEVQKITDEFIKKVDDLVKQKEQEIM 184 >gi|82701793|ref|YP_411359.1| ribosome recycling factor [Nitrosospira multiformis ATCC 25196] gi|123544950|sp|Q2YBA4|RRF_NITMU RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|82409858|gb|ABB73967.1| ribosome recycling factor [Nitrosospira multiformis ATCC 25196] Length = 185 Score = 144 bits (363), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 70/172 (40%), Positives = 109/172 (63%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M ++ LK D+ +RTGR +LD V V+ YG+ +NQVAN+++ + R + V+ W+ Sbjct: 12 KMQKSLEALKLDLGKIRTGRAHTGLLDHVTVDYYGNPTAINQVANISLADARTITVAPWE 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K+M+ ++E+ I S+LGLNP G+++R+P+P TEERR L KV E +++++RNI Sbjct: 72 KKMLGAIEKAIRNSDLGLNPTTVGELIRVPMPPLTEERRRDLTKVVKHEGEAARVAMRNI 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD HLK K K +ED + DIQK+TD I +ID + K+ E+M Sbjct: 132 RRDANAHLKDLLKEKKIAEDEERKGQEDIQKLTDRYIADIDKLLQAKEAELM 183 >gi|238784883|ref|ZP_04628883.1| Ribosome-recycling factor [Yersinia bercovieri ATCC 43970] gi|238796611|ref|ZP_04640118.1| Ribosome-recycling factor [Yersinia mollaretii ATCC 43969] gi|238714200|gb|EEQ06212.1| Ribosome-recycling factor [Yersinia bercovieri ATCC 43970] gi|238719589|gb|EEQ11398.1| Ribosome-recycling factor [Yersinia mollaretii ATCC 43969] Length = 185 Score = 144 bits (363), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 73/174 (41%), Positives = 114/174 (65%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM + + + +RTGR SPS+LD ++VE YG+ PL Q+AN+ V + R L ++V+D Sbjct: 12 RMEKCLEAFQNHISKIRTGRASPSILDGIQVEYYGTATPLRQLANIVVEDSRTLALTVFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + + A+VE+ I S+LGLNP G V+R+P+P TEERR L+KV A AE+ ++S+RN+ Sbjct: 72 RSLSAAVEKAIMTSDLGLNPSSAGTVIRVPLPALTEERRKDLIKVVRAEAEQGRVSIRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD + +K K + SED ++++QK+TD+ IK +D+ K+ E+M F Sbjct: 132 RRDANEKVKALLKDKEISEDEDRRSQDEVQKLTDAFIKKVDAALAAKEAELMDF 185 >gi|291459117|ref|ZP_06598507.1| ribosome recycling factor [Oribacterium sp. oral taxon 078 str. F0262] gi|291418371|gb|EFE92090.1| ribosome recycling factor [Oribacterium sp. oral taxon 078 str. F0262] Length = 184 Score = 144 bits (363), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 72/173 (41%), Positives = 107/173 (61%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 ++M T L ++ T+R GR +P +LD + V+ YG+ PL QV N++V E RML + W Sbjct: 10 EKMHKTHDNLMSELATIRAGRANPHVLDRITVDYYGTQTPLQQVGNISVPEARMLQIQPW 69 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 DK M+ +E+ I+ S+LG+NP +G +R+ PE TEERR L K E +K+++RN Sbjct: 70 DKGMLKEIEKAINLSDLGINPTNDGNTIRLVFPELTEERRRELTKEVKKKGEAAKVAIRN 129 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 IRRD M+ KK K+ + +ED ++ DIQ +TD I+ ID E K KE+M Sbjct: 130 IRRDAMELAKKLEKNSEITEDDLSRQTKDIQDLTDHMIEKIDRSVEAKNKELM 182 >gi|42519369|ref|NP_965299.1| ribosome recycling factor [Lactobacillus johnsonii NCC 533] gi|227890234|ref|ZP_04008039.1| ribosome recycling factor [Lactobacillus johnsonii ATCC 33200] gi|268319254|ref|YP_003292910.1| hypothetical protein FI9785_769 [Lactobacillus johnsonii FI9785] gi|47116993|sp|P61305|RRF_LACJO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|41583657|gb|AAS09265.1| ribosome recycling factor [Lactobacillus johnsonii NCC 533] gi|227849236|gb|EEJ59322.1| ribosome recycling factor [Lactobacillus johnsonii ATCC 33200] gi|262397629|emb|CAX66643.1| frr [Lactobacillus johnsonii FI9785] gi|329667112|gb|AEB93060.1| ribosome recycling factor [Lactobacillus johnsonii DPC 6026] Length = 185 Score = 144 bits (363), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 75/184 (40%), Positives = 113/184 (61%), Gaps = 2/184 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 N+VI + KD M +I+ +K++ +R G + S+LD +KV YG PL Q+++V++ Sbjct: 3 NEVI--EKAKDNMKKSIAVFQKELGGIRAGVANASLLDGIKVNYYGVPTPLTQMSSVSIP 60 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 E R+L+V+ +DK + +E I S+LG+ P +G V+RI +P+ T ERR + K Sbjct: 61 EARVLMVTPYDKSTLDDIEHAILASDLGITPANDGTVIRIVIPQLTGERRQEIAKQVGKL 120 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 AEK KI+VRN+RRD MD LK+ K G +ED SLE +QK+TD K ID ++K + Sbjct: 121 AEKGKIAVRNVRRDAMDTLKRQEKDGDITEDEQRSLEKQVQKVTDDATKEIDKLADQKSQ 180 Query: 182 EIMH 185 EI Sbjct: 181 EITQ 184 >gi|149369635|ref|ZP_01889487.1| ribosome releasing factor [unidentified eubacterium SCB49] gi|149357062|gb|EDM45617.1| ribosome releasing factor [unidentified eubacterium SCB49] Length = 192 Score = 144 bits (363), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 80/184 (43%), Positives = 114/184 (61%), Gaps = 6/184 (3%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N +ID + K+ M +TI LKK + +R G+ +PSM+ V V YGS PL QVANV Sbjct: 13 INFIID--STKEAMDNTIVHLKKKFVNIRAGKATPSMVGSVMVNYYGSPTPLTQVANVNT 70 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + + ++ W+K ++ +E+GIH +NLG NP+ G+ + I VP TEERR L K A A Sbjct: 71 PDGMTITIAPWEKGLIPEIEKGIHLANLGFNPMNNGESVIITVPPLTEERRRELAKQAKA 130 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE SK+ VRN R++ + +K SED+ A+LE D+QK+TD+ I ID F K+ Sbjct: 131 EAEDSKVGVRNDRKNANNEIKNL----DVSEDLKANLEADVQKMTDNHITLIDELFSVKE 186 Query: 181 KEIM 184 KEIM Sbjct: 187 KEIM 190 >gi|295426323|ref|ZP_06818982.1| ribosome recycling factor [Lactobacillus amylolyticus DSM 11664] gi|295063996|gb|EFG54945.1| ribosome recycling factor [Lactobacillus amylolyticus DSM 11664] Length = 185 Score = 144 bits (363), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 69/179 (38%), Positives = 118/179 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q K+ M +I +K++ ++R G + S+LD ++V YG+ PL Q+++V++ EPR+L Sbjct: 6 IQKAKENMEKSIKVFRKNLASIRAGVANASILDGIQVGYYGAPTPLKQISSVSIPEPRVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +D + +E + SNLGLNP +G+V+R+ +P+ T ERR + K AE++K Sbjct: 66 LITPYDINSLDDIEHALLASNLGLNPANDGKVIRLVIPQLTGERRQEIAKEVGKEAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 I+VRN+RRD M+ LK+ K + +ED +LE ++QK+TD +IK ID ++K+KEI Sbjct: 126 IAVRNVRRDAMNSLKRQLKDDEITEDEQRNLEKEVQKVTDDSIKEIDKIADDKRKEITQ 184 >gi|329893773|ref|ZP_08269861.1| Ribosome recycling factor [gamma proteobacterium IMCC3088] gi|328923496|gb|EGG30810.1| Ribosome recycling factor [gamma proteobacterium IMCC3088] Length = 185 Score = 144 bits (363), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 76/174 (43%), Positives = 111/174 (63%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM +I L + +RTGR PS+LD +KVE YGS PLNQVAN+ + + R L + VWD Sbjct: 12 RMQKSIEALGHNFNKIRTGRAHPSLLDGIKVEYYGSDTPLNQVANINIEDARTLSLQVWD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + M+++VE+ I +S+LGLNP G+V+RIP+P TEE R +K A A AE +++S+RN Sbjct: 72 RTMISAVEKAIMKSDLGLNPSSAGEVIRIPMPMLTEETRKGYIKQARAEAEAARVSLRNA 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD M LK K + SED ++++QK+TD +K +D K+ ++M Sbjct: 132 RRDAMSMLKDLVKEKEISEDDERRGQDEVQKLTDKMVKKVDELLAAKEADLMEI 185 >gi|224825016|ref|ZP_03698122.1| ribosome recycling factor [Lutiella nitroferrum 2002] gi|224602687|gb|EEG08864.1| ribosome recycling factor [Lutiella nitroferrum 2002] Length = 185 Score = 144 bits (363), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 70/172 (40%), Positives = 108/172 (62%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M ++ K D+ +RTGR +LD V V+ YGS VP+NQVANVT+++ R + V W+ Sbjct: 12 KMQKSLEAFKNDLTKVRTGRAHTGILDHVMVDYYGSDVPVNQVANVTLIDARTIGVQPWE 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K M+ +E+ I +S+LGLNP G+++R+P+P TEERR L+K+ AE ++++VRNI Sbjct: 72 KSMLGKIEKAIRDSDLGLNPASMGEIIRVPMPMLTEERRKDLIKLVRGEAEGARVAVRNI 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD + K K +ED ++DIQK+TD I +D K+ ++M Sbjct: 132 RRDANNEFKNLLKDKSITEDDERRGQDDIQKLTDKYIAEVDKALAAKETDLM 183 >gi|291557942|emb|CBL35059.1| ribosome recycling factor [Eubacterium siraeum V10Sc8a] Length = 184 Score = 144 bits (363), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 67/178 (37%), Positives = 111/178 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + KD+MG ++ ++ + ++R GR +P++LD V V+ YG +N +A V V E R+L Sbjct: 5 INTAKDKMGKCVAAVETEYASIRAGRANPAVLDKVTVDYYGVPTQINAMAAVAVSEARVL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V++ WD + S+E+ I S++G+ P +G+ +RI P+ TEERR L K AE+ K Sbjct: 65 VITPWDASTLKSIEKAILASDIGITPTNDGKAIRITFPQLTEERRKELCKQVKKIAEEGK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++VRN+RRD M+ K +K+ + +ED + + E D+QK+TD +D+ K+KEIM Sbjct: 125 VAVRNVRRDAMEKFKAMKKNSEITEDDLKNCEKDVQKLTDKYCDEMDAACSAKEKEIM 182 >gi|224540949|ref|ZP_03681488.1| hypothetical protein CATMIT_00100 [Catenibacterium mitsuokai DSM 15897] gi|224526100|gb|EEF95205.1| hypothetical protein CATMIT_00100 [Catenibacterium mitsuokai DSM 15897] Length = 181 Score = 144 bits (363), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 72/178 (40%), Positives = 119/178 (66%), Gaps = 4/178 (2%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ K++M ++ +++ +RTGR +PSMLD V VE YGS PLNQVA ++V+E R L Sbjct: 6 LEEAKEKMEKSVEAFSNELVNIRTGRANPSMLDRVMVEYYGSPTPLNQVAGISVVEGRQL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +DK + +E GI++++LGL P +G V+RI +P TEERR +VK + AE++K Sbjct: 66 VIKPYDKNSMKDIEHGIYQADLGLTPQNDGTVIRIVIPPLTEERRKEMVKQVNKLAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++RNIRR+ ++K+ + +ED V + + D+Q +T+ +K ID +EK+K++M Sbjct: 126 VALRNIRRNANTDVEKTGE----TEDEVKAGKEDVQDLTNEFVKKIDQIAKEKEKDLM 179 >gi|160947396|ref|ZP_02094563.1| hypothetical protein PEPMIC_01330 [Parvimonas micra ATCC 33270] gi|158446530|gb|EDP23525.1| hypothetical protein PEPMIC_01330 [Parvimonas micra ATCC 33270] Length = 185 Score = 144 bits (363), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 72/180 (40%), Positives = 117/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + ++ +M +I + ++ T+R GR +P++LD V+ YG+ P+ QVA+++V E R+L Sbjct: 6 INELERKMSKSIESYETELTTVRAGRANPTILDQFTVDYYGTETPIKQVASISVPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WD ++ +E+ + SNLG+ P +G+V+R+P P TE+RR LVKV Y E SK Sbjct: 66 VIQPWDASLITPIEKVLLASNLGITPSNDGKVIRLPFPALTEDRRKELVKVVKGYGENSK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RN+RRDG+D LKK K + SED + E ++QK+TD IK ++ + K+KE+M Sbjct: 126 IAIRNLRRDGLDKLKKLEKDKEISEDELRQAEEEVQKVTDKFIKKVEDITKLKEKELMEI 185 >gi|256823124|ref|YP_003147087.1| ribosome recycling factor [Kangiella koreensis DSM 16069] gi|256796663|gb|ACV27319.1| ribosome recycling factor [Kangiella koreensis DSM 16069] Length = 185 Score = 144 bits (363), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 78/182 (42%), Positives = 113/182 (62%), Gaps = 1/182 (0%) Query: 6 DLQNIKD-RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D+Q D RM +I K D+ +RTGR PS+L+ + V YG P++QVA++ V E R Sbjct: 4 DIQKDADQRMDKSIESYKGDLAKVRTGRAHPSLLEHIMVPYYGVDTPISQVASIGVQEGR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 LV+ ++DK + + E+ I +S+LGL P V GQV+RI +P +EERR +KV AE Sbjct: 64 TLVLQIFDKGAIEATEKAILKSDLGLTPNVAGQVIRIALPPLSEERRKEFIKVVKMEAEN 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +K++VRNIRRD + LK+ K + SED + E+ IQK+TD+ I ID EK+ E+M Sbjct: 124 AKVAVRNIRRDANNSLKELEKEKEISEDDLRRAEDLIQKLTDTKIARIDEILAEKETELM 183 Query: 185 HF 186 Sbjct: 184 EI 185 >gi|167750047|ref|ZP_02422174.1| hypothetical protein EUBSIR_01015 [Eubacterium siraeum DSM 15702] gi|167657068|gb|EDS01198.1| hypothetical protein EUBSIR_01015 [Eubacterium siraeum DSM 15702] gi|291530445|emb|CBK96030.1| ribosome recycling factor [Eubacterium siraeum 70/3] Length = 184 Score = 144 bits (363), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 67/178 (37%), Positives = 111/178 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + KD+MG ++ ++ + ++R GR +P++LD V V+ YG +N +A V V E R+L Sbjct: 5 INTAKDKMGKCVAAVETEYASIRAGRANPAVLDKVTVDYYGVPTQINAMAAVAVSEARVL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V++ WD + S+E+ I S++G+ P +G+ +RI P+ TEERR L K AE+ K Sbjct: 65 VITPWDASTLKSIEKAILASDIGITPTNDGKAIRITFPQLTEERRKELCKQVKKIAEEGK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++VRN+RRD M+ K +K+ + +ED + + E D+QK+TD +D+ K+KEIM Sbjct: 125 VAVRNVRRDAMEKFKAMKKNNEITEDDLKNCEKDVQKLTDKYCDEMDAACSAKEKEIM 182 >gi|167041121|gb|ABZ05881.1| putative Ribosome recycling factor [uncultured marine microorganism HF4000_001A02] Length = 185 Score = 144 bits (362), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 64/174 (36%), Positives = 112/174 (64%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM ++ + ++ +RTGR +P +L+ ++VE YGS +P+NQV+ V++ +PR++ + ++ Sbjct: 12 RMDQAVAHTRMELAKVRTGRANPDLLNAIQVEYYGSMMPMNQVSTVSIPDPRLITLQPFE 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K ++ +E+ I SNLGL P G + IP+P +EERR L+K H E+ ++SVRN+ Sbjct: 72 KSLIPVIEKAIMNSNLGLTPSNNGNAVLIPIPALSEERRKDLIKYVHQVVEEGRVSVRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD + H+K+ K SED + E ++Q +TD +++++ E K+KE+M F Sbjct: 132 RRDALHHVKEFGKEEHVSEDEIHRQETEMQTLTDKHVESLNEMQEHKEKELMAF 185 >gi|299147798|ref|ZP_07040861.1| ribosome recycling factor [Bacteroides sp. 3_1_23] gi|298513981|gb|EFI37867.1| ribosome recycling factor [Bacteroides sp. 3_1_23] Length = 186 Score = 144 bits (362), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 76/178 (42%), Positives = 112/178 (62%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+N +++M I +L++ + +R G+ S +LD ++V++YGS VP++ VA +T + R + Sbjct: 8 LENAQEKMDMAIMYLEEALAHIRAGKASARLLDGIRVDSYGSMVPISNVAAITTPDARSI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK M +E+ I +S+LG+ P G+++RI +P TEERR L K E +K Sbjct: 68 VIKPWDKSMFRVIEKAIIDSDLGIMPENNGEMIRIGIPPLTEERRKQLAKQCKGEGETAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +SVRN RRDG+D LKK+ K G A ED + E +QKI D IK ID EK KEIM Sbjct: 128 VSVRNARRDGIDALKKAVKDGLA-EDEQKNAEAKLQKIHDKYIKQIDDMLAEKDKEIM 184 >gi|262066278|ref|ZP_06025890.1| ribosome recycling factor [Fusobacterium periodonticum ATCC 33693] gi|291379973|gb|EFE87491.1| ribosome recycling factor [Fusobacterium periodonticum ATCC 33693] Length = 190 Score = 144 bits (362), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 76/179 (42%), Positives = 114/179 (63%), Gaps = 2/179 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +++M TI +K+ ++R GR + +MLD VKVE YGS VPLNQ+ +V+ E R+L Sbjct: 9 IKECEEKMLKTIESVKERFTSIRAGRANVAMLDGVKVENYGSDVPLNQIGSVSAPEARLL 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK ++ +E+ + +NLG+ P +G+V+R+ +PE T +RR VK+A AE K Sbjct: 69 VIDPWDKTLIPKIEKALLAANLGMTPNNDGRVIRLVLPELTADRRKEYVKLAKNEAENGK 128 Query: 127 ISVRNIRRDGMDHLKK--SRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 I+VRNIR+D +HLKK K SED + E +Q +TD IK ID +K+KEI Sbjct: 129 IAVRNIRKDINNHLKKLEKDKENPISEDELKKEETHVQTLTDKYIKEIDELLAKKEKEI 187 >gi|56412492|ref|YP_149567.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197361427|ref|YP_002141063.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|62900788|sp|Q5PD60|RRF_SALPA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238689912|sp|B5BAM9|RRF_SALPK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|56126749|gb|AAV76255.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197092903|emb|CAR58332.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 185 Score = 144 bits (362), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 72/174 (41%), Positives = 109/174 (62%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM + K + +RTGR SPS+LD + VE YG+ PL Q+A+VTV + R L ++V+D Sbjct: 12 RMEKCVEAFKTQISKVRTGRASPSLLDGIVVEYYGTLTPLRQLASVTVEDSRTLKINVFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + M +VE+ I S+LGLNP G + +P+P TEERR L K+ AE+++++VRN+ Sbjct: 72 RSMGPAVEKAIMASDLGLNPSSAGTDICVPLPPLTEERRKDLTKIVRGEAEQARVAVRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD D +K K SED + ++QK+TD+ IK +D+ +K+ E+M F Sbjct: 132 RRDANDKVKALLKDKAISEDDDRRSQEEVQKMTDAAIKKVDAALADKEAELMQF 185 >gi|294102175|ref|YP_003554033.1| ribosome recycling factor [Aminobacterium colombiense DSM 12261] gi|293617155|gb|ADE57309.1| ribosome recycling factor [Aminobacterium colombiense DSM 12261] Length = 186 Score = 144 bits (362), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 70/179 (39%), Positives = 117/179 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ + ++M I LK++ +++RTGR P +++ ++V+ YGS P+ Q+A V+V E R + Sbjct: 6 IKTMSEKMEKVIEHLKEEFISIRTGRAHPGLVNDIRVDYYGSQTPIKQLATVSVPEARQI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +D+ ++ +E+ I S+LG+NP +G+ +R+ +PE T+ERR+ L KV YAE+++ Sbjct: 66 LIAPFDRSILKGIEKAIQASSLGINPQNDGENIRLTLPELTKERRIELSKVVSKYAEEAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 I+VRNIRR+ D LKK K SED D+Q ITD IK ID + K+KEI+ Sbjct: 126 IAVRNIRREVNDTLKKMEKDSVISEDEQRKYTKDVQDITDDFIKKIDEVLKVKEKEIIE 184 >gi|255659930|ref|ZP_05405339.1| ribosome recycling factor [Mitsuokella multacida DSM 20544] gi|260847801|gb|EEX67808.1| ribosome recycling factor [Mitsuokella multacida DSM 20544] Length = 185 Score = 144 bits (362), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 72/179 (40%), Positives = 116/179 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + ++RM +I LK + +LR GR +PS+LD V V YG+ P+NQ+A VTV EPRM+ Sbjct: 6 LASHEERMKKSIEALKHEFASLRAGRATPSLLDKVMVNYYGAPTPVNQIAKVTVPEPRMI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ W+K ++ +E I +S+LGL+P +G +R+ +P T+ERR LVK + E++K Sbjct: 66 MIQPWEKSILHDIEVAIMKSDLGLSPNSDGTAIRLSIPALTQERRQELVKTVNKKTEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +++RNIRRDG + +KK K+ + +ED + +QK+ D +K D+ E K+KE+M Sbjct: 126 VALRNIRRDGNEDIKKLEKAKEITEDESKRGQESMQKLVDKYVKLADAAKEVKEKEVME 184 >gi|154489842|ref|ZP_02030103.1| hypothetical protein PARMER_00071 [Parabacteroides merdae ATCC 43184] gi|218258266|ref|ZP_03474668.1| hypothetical protein PRABACTJOHN_00323 [Parabacteroides johnsonii DSM 18315] gi|154089284|gb|EDN88328.1| hypothetical protein PARMER_00071 [Parabacteroides merdae ATCC 43184] gi|218225609|gb|EEC98259.1| hypothetical protein PRABACTJOHN_00323 [Parabacteroides johnsonii DSM 18315] Length = 187 Score = 144 bits (362), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 69/173 (39%), Positives = 111/173 (64%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 ++M I +L + + +R G+ +P +LD V+V YG+ VPL VA VTV + R ++++ W Sbjct: 13 EKMTFAIEYLDEQLSHIRAGKANPKILDCVRVMYYGAPVPLTNVATVTVPDARTIMITPW 72 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 +K+++ +E+GI +S +G+ P G+V+R+ +P TEERR L K + AE +KIS+RN Sbjct: 73 EKKIIKDIEKGIMDSEVGITPENNGEVIRLGIPPLTEERRRLLAKQSKQEAETAKISIRN 132 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD ++ LKKS K+ ED+ E ++QK+ D IK +D + K+KEIM Sbjct: 133 ARRDAIEQLKKSIKTDGTPEDVEKDAEAEVQKVHDKYIKKVDELYAAKEKEIM 185 >gi|148244406|ref|YP_001219100.1| ribosome recycling factor [Candidatus Vesicomyosocius okutanii HA] gi|166231527|sp|A5CXD6|RRF_VESOH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|146326233|dbj|BAF61376.1| ribosome recycling factor [Candidatus Vesicomyosocius okutanii HA] Length = 185 Score = 144 bits (362), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 76/179 (42%), Positives = 111/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 QN +++M +I+ LK +R R PS+L+ + + YGS VPL+QVAN++ + R L Sbjct: 7 QNSQNKMNKSINSLKNAFSKIRASRAHPSLLEQIHINYYGSMVPLSQVANISTEDSRTLK 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 S W+K+MV+ +E+ I S+LGLNP GQV+RI +P T+ERR LVK+ AEK+KI Sbjct: 67 ASPWEKDMVSVIEKAIMTSDLGLNPQTIGQVIRIHLPPLTQERRGELVKIIKDEAEKAKI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD K+ K + S+D E DIQKITD IK I+ +K+ ++ Sbjct: 127 AIRNIRRDANSDFKELLKEKEISKDEARKAEYDIQKITDEYIKKIEINLNKKEDSLLEI 185 >gi|167630327|ref|YP_001680826.1| ribosome recycling factor [Heliobacterium modesticaldum Ice1] gi|238687988|sp|B0THE0|RRF_HELMI RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|167593067|gb|ABZ84815.1| ribosome recycling factor [Heliobacterium modesticaldum Ice1] Length = 185 Score = 144 bits (362), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 69/176 (39%), Positives = 113/176 (64%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 +D+M T+ L+K+ +R GR +P++L+ V VE YG+ P+NQ+AN++ E R+LV+ Sbjct: 10 EDKMKKTVEALRKEYQHIRAGRANPALLEKVTVEYYGAPTPVNQLANISAPEARLLVIQP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 WDK ++ ++E+ I +S+LGL P +G V+R+ +P+ T+ERR LVK AE+ ++ +R Sbjct: 70 WDKSVLPALEKAILKSDLGLTPTSDGAVIRLVIPQLTQERRSELVKTVKKRAEEHRVILR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 N+RRD + +K +K SED + +IQK+TD I+ +D E K+ EIM Sbjct: 130 NLRRDANEDVKDLQKEHIISEDEGKRAQEEIQKLTDKYIREVDQVAERKEAEIMEV 185 >gi|150390448|ref|YP_001320497.1| ribosome recycling factor [Alkaliphilus metalliredigens QYMF] gi|166991551|sp|A6TRM0|RRF_ALKMQ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|149950310|gb|ABR48838.1| ribosome recycling factor [Alkaliphilus metalliredigens QYMF] Length = 185 Score = 144 bits (362), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 68/176 (38%), Positives = 114/176 (64%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 ++++M T+ LK D ++R G+ +PSMLD + V+ YGS PL QVA+V+ EPR+L++ Sbjct: 9 LEEKMTKTLGVLKDDFNSIRAGKANPSMLDRITVDYYGSITPLKQVASVSAPEPRLLIIQ 68 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 +D ++ +E+ + S+LGLNP +G+++R+ +P+ TEERR L KV AE+ ++++ Sbjct: 69 PYDPSVINGIEKALMMSDLGLNPSNDGKIIRLNIPQLTEERRKELTKVVKRVAEEGRVAL 128 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 RN RRD + LKK K + +ED + + ++QKITD K +D +K+ EI+ Sbjct: 129 RNGRRDANEQLKKMEKDSELTEDDLKQAQEEVQKITDKFNKQVDEMLVKKELEILE 184 >gi|312139239|ref|YP_004006575.1| ribosome recycling factor [Rhodococcus equi 103S] gi|311888578|emb|CBH47890.1| ribosome recycling factor [Rhodococcus equi 103S] Length = 185 Score = 144 bits (362), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 67/175 (38%), Positives = 108/175 (61%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 +++M I+ K D+ ++RTGR +P M + V VE YGS P+ Q+A++ V EPRM+++ Sbjct: 10 EEKMEKAITVAKDDLGSIRTGRANPGMFNRVVVEYYGSMTPITQLASINVPEPRMVIIKP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 ++ + +E I S+LG+NP +G ++RI VP+ TEERR VK A + E +K+++R Sbjct: 70 YEASQLGPIENAIRNSDLGVNPSNDGSIIRISVPQLTEERRREFVKQAKSKGEDAKVAIR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 N+RR MD L + +K G+A ED V E ++ K T + ID + K+ E+M Sbjct: 130 NVRRKTMDELSRIQKDGEAGEDEVGRAEKELDKTTSRYVSQIDELVKHKEAELME 184 >gi|95928705|ref|ZP_01311451.1| ribosome recycling factor [Desulfuromonas acetoxidans DSM 684] gi|95135050|gb|EAT16703.1| ribosome recycling factor [Desulfuromonas acetoxidans DSM 684] Length = 185 Score = 144 bits (362), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 70/172 (40%), Positives = 111/172 (64%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M I LK+++ +RTGR S S+LD V V+ YG+ PLNQV ++V E R++ + W+K Sbjct: 13 MDGAIDALKRELSKVRTGRASVSLLDEVCVDYYGTPTPLNQVGTLSVPEARLITIQPWEK 72 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 ++ +E+ I +S+LGL P +G ++RI +P TEERR +VK+ + +E++KIS+R+ R Sbjct: 73 NLLPEIEKAIFKSDLGLTPSSDGDLIRISIPPLTEERRKEMVKLVKSKSEETKISIRSSR 132 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 RDG D LKK K + +ED + E ++Q +TD ++ D EK+KE+M Sbjct: 133 RDGNDALKKLEKDKEITEDDLKRSEKEMQDLTDKYVQKCDDIVAEKEKELME 184 >gi|328954577|ref|YP_004371911.1| Ribosome-recycling factor [Desulfobacca acetoxidans DSM 11109] gi|328454901|gb|AEB10730.1| Ribosome-recycling factor [Desulfobacca acetoxidans DSM 11109] Length = 185 Score = 144 bits (362), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 70/180 (38%), Positives = 119/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ ++ +M + L++D +RTGR S ++L+ +K+EAYG+ +P++QVA++ EPR+L Sbjct: 6 IKEMQRKMDRALEVLRQDFSRIRTGRASVALLEGIKMEAYGATMPISQVASLAAPEPRLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WD +++ +E+ + +S+LGL P +G+++RIP+P T ERR LVK E+SK Sbjct: 66 TIQPWDSSLMSDLEKALLKSDLGLTPSNDGKIIRIPIPPLTTERRKELVKTTKKMTEESK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RN+RR+ + LK+ +K + SED V + ++QK TD IK D EK+KEIM F Sbjct: 126 VALRNLRREANELLKELKKEKQISEDEVFKAQEEVQKATDDYIKKADGLAAEKEKEIMSF 185 >gi|257065047|ref|YP_003144719.1| ribosome recycling factor [Slackia heliotrinireducens DSM 20476] gi|256792700|gb|ACV23370.1| ribosome recycling factor [Slackia heliotrinireducens DSM 20476] Length = 184 Score = 144 bits (362), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 70/171 (40%), Positives = 104/171 (60%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M + I LK ++RTGR + +LD ++V+ YG P+NQ+A V V E ML V WDK Sbjct: 12 MDEAIDNLKTAFASVRTGRANAMVLDKIRVDYYGVPTPINQMAAVKVPEAHMLTVEPWDK 71 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 M+ +VE I S+LG+ P +G V+R+P P TEERR L K H YAE+ +I++RN+R Sbjct: 72 SMLRAVEAAIMASDLGITPSNDGHVIRLPFPVLTEERRKELAKTCHTYAEECRIAIRNVR 131 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 R+ + K +K+ + ED E +QK+TDS +K +D + K+ E+M Sbjct: 132 REANAKIDKGKKASEIPEDDARRGEEQVQKLTDSYVKKVDELLKAKEAEVM 182 >gi|146318980|ref|YP_001198692.1| ribosome recycling factor [Streptococcus suis 05ZYH33] gi|146321189|ref|YP_001200900.1| ribosome recycling factor [Streptococcus suis 98HAH33] gi|253752048|ref|YP_003025189.1| ribosome recycling factor [Streptococcus suis SC84] gi|253753873|ref|YP_003027014.1| ribosome recycling factor [Streptococcus suis P1/7] gi|253755251|ref|YP_003028391.1| ribosome recycling factor [Streptococcus suis BM407] gi|302024058|ref|ZP_07249269.1| ribosome recycling factor [Streptococcus suis 05HAS68] gi|330832480|ref|YP_004401305.1| ribosome recycling factor [Streptococcus suis ST3] gi|166231519|sp|A4W2B1|RRF_STRS2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166231521|sp|A4VW03|RRF_STRSY RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|145689786|gb|ABP90292.1| Ribosome recycling factor [Streptococcus suis 05ZYH33] gi|145691995|gb|ABP92500.1| Ribosome recycling factor [Streptococcus suis 98HAH33] gi|251816337|emb|CAZ51968.1| ribosome recycling factor [Streptococcus suis SC84] gi|251817715|emb|CAZ55464.1| ribosome recycling factor [Streptococcus suis BM407] gi|251820119|emb|CAR46427.1| ribosome recycling factor [Streptococcus suis P1/7] gi|319758416|gb|ADV70358.1| ribosome recycling factor [Streptococcus suis JS14] gi|329306703|gb|AEB81119.1| ribosome recycling factor [Streptococcus suis ST3] Length = 185 Score = 144 bits (362), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 74/175 (42%), Positives = 114/175 (65%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 ++RM + L ++ +R GR + S+LD + VE YGS PLNQ+A +TV E R+L+++ Sbjct: 10 QERMNQSHQSLAREFSHIRAGRANASLLDRISVEYYGSPTPLNQLAGITVPEARVLLITP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +DK ++ +ER ++ S+LGL P +G V+R+ +P TEE R L K E SK+++R Sbjct: 70 FDKSILKDIERALNASDLGLTPQSDGTVIRLVIPALTEETRKNLAKDVKKVGENSKVAIR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 NIRRD MD KK+ K+ + +ED + +LE DIQK+TD IK ID +K+KE++ Sbjct: 130 NIRRDAMDEAKKAEKAKEITEDELKTLEKDIQKVTDDAIKTIDKMTADKEKELLE 184 >gi|254467840|ref|ZP_05081246.1| ribosome recycling factor [beta proteobacterium KB13] gi|207086650|gb|EDZ63933.1| ribosome recycling factor [beta proteobacterium KB13] Length = 180 Score = 144 bits (362), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 76/180 (42%), Positives = 113/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +K +M TI LK D +RTGR +LD + V+ YG+ PL+Q+ANVT+ + + Sbjct: 1 MEELKIKMEKTIERLKNDFSKIRTGRAHTGLLDHLSVDYYGTITPLSQMANVTLGDNVTI 60 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V +DK +++E+ I +S+LGLNP V G ++R+P+P TEERR L+KV + E +K Sbjct: 61 NVQPYDKTQTSAIEKVIRDSDLGLNPAVNGDLIRVPMPPLTEERRKDLIKVVKSEGENAK 120 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 IS+RNIRRDG D LKK K SED + IQ +TD IK+ID+ K+K+++ Sbjct: 121 ISIRNIRRDGNDELKKQLKEKLISEDDEKRDQAKIQTLTDEFIKSIDNLITSKEKDLLEI 180 >gi|167626815|ref|YP_001677315.1| ribosome recycling factor [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|241667396|ref|ZP_04754974.1| ribosome recycling factor [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254875945|ref|ZP_05248655.1| ribosome recycling factor [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|189044055|sp|B0U0Z8|RRF_FRAP2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|167596816|gb|ABZ86814.1| ribosome recycling factor [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|254841966|gb|EET20380.1| ribosome recycling factor [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 185 Score = 144 bits (362), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 72/178 (40%), Positives = 110/178 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ ++RM T+ L D+ +RTGR P +L V ++ YGS P+ QVANVTVL+ R L Sbjct: 6 LKDAENRMSKTLEVLADDLAKIRTGRAHPDILAHVTIDYYGSATPITQVANVTVLDARTL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ W+K + +E+ I S+LGLNP G LR+P+P EERR LVK+ + E + Sbjct: 66 GITPWEKGLAGKIEKAIITSDLGLNPTNLGDSLRVPMPALNEERRKELVKLVKSETESGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +S+RNIRRD +K+ K + +ED E++IQKITD I D+ +K++++M Sbjct: 126 VSIRNIRRDANGDIKELLKEKEITEDEAKRAEDNIQKITDKMIAQADALAVKKEQDLM 183 >gi|320352945|ref|YP_004194284.1| ribosome recycling factor [Desulfobulbus propionicus DSM 2032] gi|320121447|gb|ADW16993.1| ribosome recycling factor [Desulfobulbus propionicus DSM 2032] Length = 185 Score = 143 bits (361), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 73/183 (39%), Positives = 116/183 (63%), Gaps = 2/183 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 ++ID ++++M + LK+D++ +RTGR S S+LD +KV AYGS + L+QV +T+ Sbjct: 3 TKIID--QLREKMTASSEALKRDLVKIRTGRASLSLLDGIKVNAYGSQMSLDQVGTLTIP 60 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 E M+ + WD +++ ++E+ I S LGL P +G V+R+ +P T ERR LVK Sbjct: 61 ENNMIAIKPWDPQVLPAIEKAILASGLGLTPASDGNVVRLTIPPLTGERRKELVKQVKKI 120 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 E+ K+++RNIRRD ++ LKK +K + SED + L+ + QK+TD I ID K+K Sbjct: 121 GEEYKVAIRNIRRDAIETLKKMKKDKELSEDELFRLQEEAQKVTDGYIGQIDEITGGKEK 180 Query: 182 EIM 184 E+M Sbjct: 181 EVM 183 >gi|291563192|emb|CBL42008.1| ribosome recycling factor [butyrate-producing bacterium SS3/4] Length = 184 Score = 143 bits (361), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 70/179 (39%), Positives = 112/179 (62%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 +L+ +++M +I L + ++R GR +P +LD +KV+ YG+ P+ QV N++V E RM Sbjct: 4 ELKVYEEKMEKSIDALLNEYASIRAGRANPHVLDKIKVDYYGTPTPIQQVGNISVPEARM 63 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 +++ W+K ++ +E+ I S LG+NP +G V+R+ PE TEERR L K + + Sbjct: 64 ILIQPWEKSLIRPIEKAIQTSELGINPSNDGSVIRLVFPELTEERRKELAKDVKKKGDGA 123 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 K+++RNIRRD + KK KS + SED + L +QK+TD +I+ ID E K KEI+ Sbjct: 124 KVAIRNIRRDANEAFKKMEKSDEISEDDLKELTEKVQKLTDKSIEKIDKAVENKTKEIL 182 >gi|223994729|ref|XP_002287048.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220978363|gb|EED96689.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 179 Score = 143 bits (361), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 70/175 (40%), Positives = 116/175 (66%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 + ++RM T++ L +++ T+RTGR +P+MLD V+ + YG+ PL+Q+A ++V + L V Sbjct: 2 DCEERMDKTMASLAENLATIRTGRANPNMLDRVECDYYGATTPLSQMATISVPSSQQLQV 61 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 S +DK ++ +E+ I S LG P +G V+RI +P+ TEERR L+K + E++K++ Sbjct: 62 SPFDKSVLNDIEKAIIYSGLGFTPNNDGSVIRINIPQLTEERRKELLKQCKSIGEEAKVA 121 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +RNIRRDG+D++KK K+G +D ++ IQK TD +K ID +K+KE+ Sbjct: 122 IRNIRRDGVDNIKKMEKNGDLGKDQALDGQDAIQKSTDEHVKMIDETVAKKEKEV 176 >gi|149194777|ref|ZP_01871872.1| ribosome recycling factor [Caminibacter mediatlanticus TB-2] gi|149135200|gb|EDM23681.1| ribosome recycling factor [Caminibacter mediatlanticus TB-2] Length = 184 Score = 143 bits (361), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 73/174 (41%), Positives = 110/174 (63%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K+ M +I LKKD+ TLRTG+VS +LD VKVE YG+ PLNQVAN+ ++ +V+S Sbjct: 9 KEHMQKSIEVLKKDLNTLRTGKVSIHVLDGVKVEYYGAPTPLNQVANINAVDATTIVISP 68 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 WDK ++ +E+ I E+N+G NP +G +++ P TEE R K A + EK+KI++R Sbjct: 69 WDKSIINDIEKAIQEANVGANPNNDGDTIKLYFPPMTEEERKKQAKKAKEFGEKAKIAIR 128 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 NIRR+ D +KK K+ + +ED + +Q+ITD IK +D +K ++M Sbjct: 129 NIRREANDEIKKMFKNKEITEDDQKRGLDKVQEITDEFIKKVDEIVNKKIDDVM 182 >gi|124267165|ref|YP_001021169.1| ribosome recycling factor [Methylibium petroleiphilum PM1] gi|166230798|sp|A2SH95|RRF_METPP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|124259940|gb|ABM94934.1| ribosome recycling factor [Methylibium petroleiphilum PM1] Length = 186 Score = 143 bits (361), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 73/168 (43%), Positives = 104/168 (61%) Query: 17 TISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMV 76 +I K ++ +RTGR P +LD V VE YGS V ++QVANV++L+ R + V W+K M Sbjct: 17 SIESFKSELQKIRTGRAHPGILDQVHVEYYGSMVSISQVANVSLLDARTISVQPWEKGMG 76 Query: 77 ASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDG 136 +E+ I ES+LGLNP +G++LR+P+P EERR L KV E ++I+VRN+RRD Sbjct: 77 PKIEKAIRESDLGLNPSSQGELLRVPMPALNEERRRDLTKVVRGAGEDARIAVRNLRRDA 136 Query: 137 MDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 D KK K SED +++QK+TD I ID + K+ EI+ Sbjct: 137 NDQAKKLLKDKAISEDDERRSLDEVQKLTDRVIAEIDRLVQSKEAEIL 184 >gi|260060696|ref|YP_003193776.1| ribosome recycling factor [Robiginitalea biformata HTCC2501] gi|88784826|gb|EAR15995.1| ribosome recycling factor [Robiginitalea biformata HTCC2501] Length = 184 Score = 143 bits (361), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 76/178 (42%), Positives = 112/178 (62%), Gaps = 4/178 (2%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + K+ M + IS L+K+++ +R GR SPSML V V+ YGS PLNQ++NV + R + Sbjct: 9 LDSAKENMDNAISHLEKELVKIRAGRASPSMLSSVMVDYYGSQTPLNQMSNVNTPDARTI 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V W+K M+ ++E I +NLG NP+ G+++ I VP TEERR LVK A A AE++K Sbjct: 69 SVQPWEKAMIPNIETAITNANLGFNPMNNGEMVIINVPPLTEERRKQLVKQAKAEAEEAK 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +S+R R+D K K+ SED+ + E DIQ++TD+ + +D E K+ EIM Sbjct: 129 VSIRAARQDA----NKEIKALDISEDLEQNAEIDIQELTDTYTERVDGILEHKEAEIM 182 >gi|333029799|ref|ZP_08457860.1| Ribosome-recycling factor [Bacteroides coprosuis DSM 18011] gi|332740396|gb|EGJ70878.1| Ribosome-recycling factor [Bacteroides coprosuis DSM 18011] Length = 185 Score = 143 bits (361), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 72/168 (42%), Positives = 108/168 (64%), Gaps = 1/168 (0%) Query: 17 TISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMV 76 I +L++ + +R G+ +P +LD ++V++YGS +P+N VA VT + R +++ WDK M Sbjct: 17 AIDYLEESLSHIRAGKANPKLLDGIRVDSYGSLMPINNVAAVTTPDARSILIKPWDKSMF 76 Query: 77 ASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDG 136 + +E+ I +S+LG+ P G+V+RI +P TEERR+ L K E +KISVRN RRDG Sbjct: 77 SVIEKAIIDSDLGIMPENNGEVIRIGIPPLTEERRIQLTKQCRGEGETAKISVRNARRDG 136 Query: 137 MDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +D+LKK+ K G ED S E +QK+ D IK I+ EK +EIM Sbjct: 137 IDYLKKAVKEG-LPEDAQKSGEEKLQKLHDKFIKKIEELLNEKDQEIM 183 >gi|307152127|ref|YP_003887511.1| ribosome recycling factor [Cyanothece sp. PCC 7822] gi|306982355|gb|ADN14236.1| ribosome recycling factor [Cyanothece sp. PCC 7822] Length = 182 Score = 143 bits (361), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 70/177 (39%), Positives = 111/177 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++ M TI ++ T+RTGR + S+LD V VE YG+ PL +AN+T + + Sbjct: 3 LAEVQENMQKTIEATQRSFNTIRTGRANASLLDRVTVEYYGTETPLKSLANITTPDATTI 62 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + +D+ + +E+ I S++GL P +GQ++R+ +P T +RR LVK+A AE+ K Sbjct: 63 AIQPYDRSSLGKIEKAIQMSDVGLTPNNDGQIIRLNIPPLTSDRRKELVKLAGKLAEEGK 122 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 ++VRNIRRD +D ++K KS + SED +L++DIQKITD ID + K+K+I Sbjct: 123 VAVRNIRRDAIDAIRKQEKSHEISEDEARNLQDDIQKITDEYNAKIDELLKAKEKDI 179 >gi|15806522|ref|NP_295233.1| ribosome recycling factor [Deinococcus radiodurans R1] gi|22001957|sp|Q9RU82|RRF_DEIRA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|6459273|gb|AAF11077.1|AE001995_2 ribosome recycling factor [Deinococcus radiodurans R1] Length = 183 Score = 143 bits (361), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 70/176 (39%), Positives = 115/176 (65%), Gaps = 3/176 (1%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 + +++M I + ++ LRTGR +P +L + V+ YGS +P++QVA++T +PR LV+ Sbjct: 10 DTREKMNKAIEAFENNLSVLRTGRANPGILKKIVVDYYGSQMPIDQVASITTPDPRTLVI 69 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 + WD+ + +E+ I +S+LGLNP +G + I +P TEERR LVK A YAE ++I+ Sbjct: 70 TPWDRGALNPIEKAIRDSDLGLNPNNKGDTIFISLPMLTEERRKDLVKNAKNYAEDARIA 129 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 VRN+R+ +D +KK G ED + E D+QKITD + ++S F++K++EI+ Sbjct: 130 VRNLRKHALDEVKKVEGLG---EDEIKRGEADVQKITDEYVARVESVFQKKEQEIL 182 >gi|332140473|ref|YP_004426211.1| ribosome recycling factor [Alteromonas macleodii str. 'Deep ecotype'] gi|238693254|sp|B4RVI6|RRF_ALTMD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|327550495|gb|AEA97213.1| ribosome recycling factor [Alteromonas macleodii str. 'Deep ecotype'] Length = 185 Score = 143 bits (361), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 74/177 (41%), Positives = 109/177 (61%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 + ++RM ++ LK +RTGR PS+LD + V YG PL QVANV + R L + Sbjct: 8 DAQERMEKSLVALKGQFSKIRTGRAHPSLLDGIMVPYYGVDTPLKQVANVVAEDSRTLAL 67 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 +V+DK + +VE+ I +S+LGLNP+ G +RIP+P TEERR L++V AE +++ Sbjct: 68 TVFDKSAIQAVEKAIMQSDLGLNPMSAGGSIRIPLPPLTEERRKDLIRVVRNEAEGGRVA 127 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +RNIRRD +K K + SED + E +IQ IT+ IK +DS +K+KE+M Sbjct: 128 IRNIRRDANGDVKDLLKEKEISEDESRAAEENIQSITNEFIKKVDSLLADKEKELME 184 >gi|238854749|ref|ZP_04645079.1| ribosome recycling factor [Lactobacillus jensenii 269-3] gi|260663981|ref|ZP_05864834.1| ribosome recycling factor [Lactobacillus jensenii SJ-7A-US] gi|282932860|ref|ZP_06338257.1| ribosome recycling factor [Lactobacillus jensenii 208-1] gi|313472270|ref|ZP_07812762.1| ribosome recycling factor [Lactobacillus jensenii 1153] gi|238832539|gb|EEQ24846.1| ribosome recycling factor [Lactobacillus jensenii 269-3] gi|239529668|gb|EEQ68669.1| ribosome recycling factor [Lactobacillus jensenii 1153] gi|260561867|gb|EEX27836.1| ribosome recycling factor [Lactobacillus jensenii SJ-7A-US] gi|281302895|gb|EFA95100.1| ribosome recycling factor [Lactobacillus jensenii 208-1] Length = 185 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 70/173 (40%), Positives = 113/173 (65%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K+ M +I+ +K++ +R G + S+L+ VKV+ YG PL Q+++VT+ E R+L+V+ Sbjct: 10 KENMNKSIAVYQKELGNIRAGVANASLLEGVKVDYYGVPTPLTQMSSVTIPEARVLLVTP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +DK + ++E + S+LGL P +G V+R+ +P+ T ERR + K AE++KI++R Sbjct: 70 YDKSSLDNIEHALLASDLGLTPANDGNVIRLVIPQLTGERREEIAKQVGKQAEQAKIAIR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 N+RR+ MD LKK K+G +ED LE D+QK+TD K +D +EK+KEI Sbjct: 130 NVRREAMDSLKKQEKNGDITEDEQKRLEKDVQKVTDDATKRVDQLADEKRKEI 182 >gi|217072182|gb|ACJ84451.1| unknown [Medicago truncatula] gi|217072782|gb|ACJ84751.1| unknown [Medicago truncatula] Length = 262 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 68/176 (38%), Positives = 116/176 (65%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 ++K RM T+ +K + ++RTGR +PSMLD ++VE YGS V L +A ++ + L+V Sbjct: 85 DVKSRMERTLDNVKTNFSSIRTGRATPSMLDKIEVEYYGSPVSLKTIAQISTPDASSLLV 144 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 S +DK + ++E+ I S++G+ P +G+V+R+ +P+ T +RR L K+ E+ K++ Sbjct: 145 SPYDKSSLKAIEKAIVNSDVGMTPNNDGEVIRLSIPQLTSDRRKELTKIVSKQVEEGKVA 204 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +RNIRRD + +K K K SED V L +D+QK+TD IK +D+ +++K+KE++ Sbjct: 205 LRNIRRDALKAYEKLEKDKKLSEDNVKDLSSDLQKLTDDYIKKVDALYKQKEKELL 260 >gi|332883553|gb|EGK03836.1| ribosome-recycling factor [Dysgonomonas mossii DSM 22836] Length = 187 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 75/177 (42%), Positives = 113/177 (63%), Gaps = 1/177 (0%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q + +M ++ FL + + +R G+ +P +LD +K+E YGS PL+ VA + + R ++ Sbjct: 10 QKAEAKMLASVEFLDETLSRIRAGKANPHILDGIKLEYYGSITPLSGVAAINTPDARTII 69 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K+M+ VE+ I S++G+ P G+V+R+ +P TEERR LVK A AE +K+ Sbjct: 70 VQPWEKQMLKEVEKAILNSDVGITPDNNGEVIRLSIPPLTEERRKLLVKQAKQEAEDAKV 129 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 SVRN RRD +D +KKS K G A ED+ EN++QK+ D IK ID F K+KEI+ Sbjct: 130 SVRNARRDAIDTIKKSVKEGLA-EDVAKDGENEMQKLHDKYIKKIDDLFALKEKEIL 185 >gi|294056380|ref|YP_003550038.1| ribosome recycling factor [Coraliomargarita akajimensis DSM 45221] gi|293615713|gb|ADE55868.1| ribosome recycling factor [Coraliomargarita akajimensis DSM 45221] Length = 185 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 73/157 (46%), Positives = 103/157 (65%), Gaps = 1/157 (0%) Query: 27 TLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHES 86 +L TG+ SP+MLD VKV+AYGS V L +VA VT + R +VV WDK ++ VE+GI ++ Sbjct: 27 SLHTGKASPAMLDSVKVDAYGSTVTLKEVAAVTTPDARTIVVQPWDKSVIREVEKGIIDA 86 Query: 87 NLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKS 146 NLG NP+V+G +LR+PVPE T ERR L K A AE ++ +R++RRDG+D LK ++ Sbjct: 87 NLGFNPLVDGGILRVPVPELTGERRAELAKQAGGMAEDGRVRIRSVRRDGLDLLKSAKDD 146 Query: 147 GKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 G SED V E +IQ D I I+ +K+ ++ Sbjct: 147 G-LSEDDVKRYEKEIQTEHDKYIAEINDQLSKKEADL 182 >gi|295114850|emb|CBL35697.1| ribosome recycling factor [butyrate-producing bacterium SM4/1] Length = 181 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 72/174 (41%), Positives = 108/174 (62%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 +++M + L + ++R GR +P +LD ++V+ YG+ PL QVAN++V EPRM+ + Sbjct: 8 FEEKMDKSYDALLNEFSSIRAGRANPHVLDKLRVDYYGAPTPLQQVANISVPEPRMIQIQ 67 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 W+K +V ++E+ I S+LG+NP +G V+R+ PE TEERR L K E +K++V Sbjct: 68 PWEKSLVKAIEKAILTSDLGINPSNDGSVIRLIFPELTEERRKELAKDIKKKGEGAKVAV 127 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 RNIRRD D KK K+ + SED ++ E IQK+TD I ID E K K + Sbjct: 128 RNIRRDANDTFKKMEKANEISEDDLSDAEEKIQKMTDKMIDKIDKAVETKTKRL 181 >gi|300361909|ref|ZP_07058086.1| ribosome recycling factor [Lactobacillus gasseri JV-V03] gi|300354528|gb|EFJ70399.1| ribosome recycling factor [Lactobacillus gasseri JV-V03] Length = 185 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 74/184 (40%), Positives = 115/184 (62%), Gaps = 2/184 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 N+VI + KD M +I+ +K++ +R G + S+L+ +KV+ YG PL Q+++V++ Sbjct: 3 NEVI--EKAKDNMKKSIAVFQKELGGIRAGVANASLLEGIKVDYYGVPTPLTQMSSVSIP 60 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 E R+L+V+ +DK + +E I S+LG+ P +G V+RI +P+ T ERR + K Sbjct: 61 EARVLMVTPYDKSSLDDIEHAILASDLGITPANDGSVIRIVIPQLTGERRQEIAKQVGKL 120 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 AEK KI+VRN+RRD MD LK+ K+G +ED SLE +QK+TD K ID ++K + Sbjct: 121 AEKGKIAVRNVRRDAMDTLKRQEKNGDITEDEQRSLEKQVQKVTDDATKEIDKLADQKSQ 180 Query: 182 EIMH 185 EI Sbjct: 181 EITQ 184 >gi|78222467|ref|YP_384214.1| ribosome recycling factor [Geobacter metallireducens GS-15] gi|123572206|sp|Q39W85|RRF_GEOMG RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|78193722|gb|ABB31489.1| ribosome recycling factor [Geobacter metallireducens GS-15] Length = 185 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 67/179 (37%), Positives = 113/179 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + ++K M ++ L+++ +RTGR + +LD +KVE YG+ PL+QVA ++V EPR + Sbjct: 6 IADMKAHMEKSVDALRREYQKVRTGRATTGLLDDIKVEYYGNPSPLSQVATLSVPEPRTI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + W+ +++ +E+ I +NLG P +G+ +RI +P TEERR +VK AE +K Sbjct: 66 TIQPWEAKLIPVIEKAIMNANLGFTPANDGKTIRISLPPLTEERRKEIVKTLKKMAEDTK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRNIRRDG+D LKK K K SED + E ++Q +T++ + ++ K+KE++ Sbjct: 126 VAVRNIRRDGIDSLKKLEKDKKISEDDLKRAEKEVQDVTNTFVAKVEEVLTHKEKEVLE 184 >gi|15639592|ref|NP_219042.1| ribosome recycling factor [Treponema pallidum subsp. pallidum str. Nichols] gi|189025830|ref|YP_001933602.1| ribosome recycling factor [Treponema pallidum subsp. pallidum SS14] gi|6094140|sp|O83613|RRF_TREPA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238689331|sp|B2S3J4|RRF_TREPS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|3322898|gb|AAC65577.1| ribosome recycling factor [Treponema pallidum subsp. pallidum str. Nichols] gi|189018405|gb|ACD71023.1| ribosome recycling factor [Treponema pallidum subsp. pallidum SS14] gi|291059975|gb|ADD72710.1| ribosome recycling factor [Treponema pallidum subsp. pallidum str. Chicago] Length = 183 Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 67/173 (38%), Positives = 114/173 (65%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M ++S L++ TLRT R + +LD + V+ Y L+QVA V+V E R++++ WD Sbjct: 10 KMKKSLSALQEGFNTLRTERATAHLLDQITVDYYQQPTALSQVATVSVPEARLIIIQPWD 69 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K ++A +ER I +S L LNP +G+V+R+ +P T+ERR LV+ A A AE++++++RNI Sbjct: 70 KTLLADIERAILKSKLSLNPSNDGKVIRLVIPPLTQERRKELVRQARALAEQARVAIRNI 129 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 RR+G++ K+ K G SED + + E QK TD+++ ++ + EK+K+I+ Sbjct: 130 RREGIEEAKRGHKEGLLSEDALKAAEEAFQKATDASVADVARYLAEKEKDILE 182 >gi|296876070|ref|ZP_06900124.1| ribosome recycling factor [Streptococcus parasanguinis ATCC 15912] gi|312868288|ref|ZP_07728488.1| ribosome recycling factor [Streptococcus parasanguinis F0405] gi|296432781|gb|EFH18574.1| ribosome recycling factor [Streptococcus parasanguinis ATCC 15912] gi|311096033|gb|EFQ54277.1| ribosome recycling factor [Streptococcus parasanguinis F0405] Length = 185 Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 69/178 (38%), Positives = 113/178 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+RM + L ++ ++R GR + S+LD + VE YG PLNQ+A++T+ E R+L Sbjct: 6 VEKAKERMTQSHQSLGREFGSIRAGRANASLLDRIFVEYYGVETPLNQLASITIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK + +E I+ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LITPFDKSSLKDIEHSINASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++RNIRRD MD KK K+ + +ED + LE +IQK+TD +K++D K+KE+M Sbjct: 126 VAIRNIRRDAMDEAKKQEKAKEITEDELKGLEKEIQKVTDDAVKHVDEMTAHKEKELM 183 >gi|160885096|ref|ZP_02066099.1| hypothetical protein BACOVA_03094 [Bacteroides ovatus ATCC 8483] gi|237714925|ref|ZP_04545406.1| ribosome recycling factor [Bacteroides sp. D1] gi|237718246|ref|ZP_04548727.1| ribosome recycling factor [Bacteroides sp. 2_2_4] gi|260174237|ref|ZP_05760649.1| ribosome recycling factor [Bacteroides sp. D2] gi|262406807|ref|ZP_06083356.1| ribosome recycling factor [Bacteroides sp. 2_1_22] gi|293368761|ref|ZP_06615365.1| ribosome recycling factor [Bacteroides ovatus SD CMC 3f] gi|294647222|ref|ZP_06724821.1| ribosome recycling factor [Bacteroides ovatus SD CC 2a] gi|294809166|ref|ZP_06767882.1| ribosome recycling factor [Bacteroides xylanisolvens SD CC 1b] gi|298483675|ref|ZP_07001850.1| ribosome recycling factor [Bacteroides sp. D22] gi|315922506|ref|ZP_07918746.1| conserved hypothetical protein [Bacteroides sp. D2] gi|156109446|gb|EDO11191.1| hypothetical protein BACOVA_03094 [Bacteroides ovatus ATCC 8483] gi|229445250|gb|EEO51041.1| ribosome recycling factor [Bacteroides sp. D1] gi|229452430|gb|EEO58221.1| ribosome recycling factor [Bacteroides sp. 2_2_4] gi|262355510|gb|EEZ04601.1| ribosome recycling factor [Bacteroides sp. 2_1_22] gi|292636066|gb|EFF54554.1| ribosome recycling factor [Bacteroides ovatus SD CMC 3f] gi|292637509|gb|EFF55928.1| ribosome recycling factor [Bacteroides ovatus SD CC 2a] gi|294443560|gb|EFG12311.1| ribosome recycling factor [Bacteroides xylanisolvens SD CC 1b] gi|295084688|emb|CBK66211.1| ribosome recycling factor [Bacteroides xylanisolvens XB1A] gi|298270245|gb|EFI11831.1| ribosome recycling factor [Bacteroides sp. D22] gi|313696381|gb|EFS33216.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 186 Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 76/178 (42%), Positives = 111/178 (62%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L N +++M I +L++ + +R G+ S +LD ++V++YGS VP++ VA +T + R + Sbjct: 8 LDNAQEKMDMAIMYLEEALAHIRAGKASARLLDGIRVDSYGSMVPISNVAAITTPDARSI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK M +E+ I +S+LG+ P G+++RI +P TEERR L K E +K Sbjct: 68 VIKPWDKSMFRVIEKAIIDSDLGIMPENNGEMIRIGIPPLTEERRKQLAKQCKGEGETAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +SVRN RRDG+D LKK+ K G A ED + E +QKI D IK ID EK KEIM Sbjct: 128 VSVRNARRDGIDALKKAVKDGLA-EDEQKNAEAKLQKIHDKYIKQIDDMLAEKDKEIM 184 >gi|124025289|ref|YP_001014405.1| ribosome recycling factor [Prochlorococcus marinus str. NATL1A] gi|166230815|sp|A2C0Y0|RRF_PROM1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|123960357|gb|ABM75140.1| Ribosome recycling factor [Prochlorococcus marinus str. NATL1A] Length = 182 Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 70/177 (39%), Positives = 111/177 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q +K+ M ++ +++ T+RTGR + S+LD + VE YG+ PL +A +T + + + Sbjct: 4 QELKNTMSKSVEAAQRNFNTIRTGRANTSLLDRISVEYYGAETPLKSLATITTPDSQTIA 63 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +D +AS+E+ I S+LG P +G+++RI VP TEERR K+A YAE+ K+ Sbjct: 64 IQPFDLGSLASIEKAIATSDLGFTPNNDGKIIRINVPPLTEERRKEFCKLASKYAEEGKV 123 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++RNIRR+ +D +KKS K G SED + IQK TD+ IK+I+ EK+ EI+ Sbjct: 124 ALRNIRREAIDRVKKSEKDGDLSEDQSRDEQEKIQKETDNFIKDIEKKLSEKEAEIL 180 >gi|239994190|ref|ZP_04714714.1| ribosome recycling factor [Alteromonas macleodii ATCC 27126] Length = 185 Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 74/177 (41%), Positives = 109/177 (61%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 + ++RM ++ LK +RTGR PS+LD + V YG PL QVANV + R L + Sbjct: 8 DAQERMEKSLVSLKGQFSKIRTGRAHPSLLDGIMVPYYGVDTPLKQVANVVAEDSRTLAL 67 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 +V+DK + +VE+ I +S+LGLNP+ G +RIP+P TEERR L++V AE +++ Sbjct: 68 TVFDKSAIQAVEKAIMQSDLGLNPMSAGGSIRIPLPPLTEERRKDLIRVVRNEAEGGRVA 127 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +RNIRRD +K K + SED + E +IQ IT+ IK +DS +K+KE+M Sbjct: 128 IRNIRRDANGDIKDLLKEKEISEDESRAAEENIQSITNDFIKKVDSMLADKEKELME 184 >gi|260890240|ref|ZP_05901503.1| ribosome recycling factor [Leptotrichia hofstadii F0254] gi|260859860|gb|EEX74360.1| ribosome recycling factor [Leptotrichia hofstadii F0254] Length = 185 Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 71/178 (39%), Positives = 113/178 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ +++M ++ K +R GR S SMLD V VEAYGS PLNQV V+ E R+L Sbjct: 6 LKEAEEKMQKSVENTKTKFSHVRAGRASVSMLDGVTVEAYGSATPLNQVGTVSAPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK ++ ++E+ I ++NLG NP +G+++R+ VPE TE+RR VK+ AE+ K Sbjct: 66 VIDPWDKSLIPAIEKTILQANLGFNPSNDGKIIRLVVPELTEDRRKEYVKMVKKEAEEGK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++RN+R++ + L+K K + +ED + S E +QK TD I +D +K+KE++ Sbjct: 126 VAIRNVRKEVNNKLRKLEKDSEITEDELKSSEEKVQKSTDKFIAQVDDALSKKEKELL 183 >gi|116629461|ref|YP_814633.1| ribosome recycling factor [Lactobacillus gasseri ATCC 33323] gi|238852611|ref|ZP_04643021.1| ribosome recycling factor [Lactobacillus gasseri 202-4] gi|311110891|ref|ZP_07712288.1| ribosome recycling factor [Lactobacillus gasseri MV-22] gi|122273601|sp|Q044C7|RRF_LACGA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|116095043|gb|ABJ60195.1| ribosome recycling factor [Lactobacillus gasseri ATCC 33323] gi|238834757|gb|EEQ26984.1| ribosome recycling factor [Lactobacillus gasseri 202-4] gi|311066045|gb|EFQ46385.1| ribosome recycling factor [Lactobacillus gasseri MV-22] Length = 185 Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 74/184 (40%), Positives = 115/184 (62%), Gaps = 2/184 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 N+VI + KD M +I+ +K++ +R G + S+L+ +KV+ YG PL Q+++V++ Sbjct: 3 NEVI--EKAKDNMKKSIAVFQKELGGIRAGVANASLLEGIKVDYYGVPTPLTQMSSVSIP 60 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 E R+L+V+ +DK + +E I S+LG+ P +G V+RI +P+ T ERR + K Sbjct: 61 EARVLMVTPYDKSSLDDIEHAILASDLGITPANDGTVIRIVIPQLTGERRQEIAKQVGKL 120 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 AEK KI+VRN+RRD MD LK+ K+G +ED SLE +QK+TD K ID ++K + Sbjct: 121 AEKGKIAVRNVRRDAMDTLKRQEKNGDITEDEQRSLEKQVQKVTDDATKEIDKLADQKSQ 180 Query: 182 EIMH 185 EI Sbjct: 181 EITQ 184 >gi|313677103|ref|YP_004055099.1| ribosome recycling factor [Marivirga tractuosa DSM 4126] gi|312943801|gb|ADR22991.1| ribosome recycling factor [Marivirga tractuosa DSM 4126] Length = 186 Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 72/178 (40%), Positives = 110/178 (61%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K+ M I K ++ +R G+ SP+MLD + V+ YG+ P+NQVA+++ + R + Sbjct: 8 LDEAKELMEKAIQHTKSNLQKIRAGKASPAMLDGLMVDYYGNDTPINQVASISTPDARSI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ W+K ++ +ER I S+LG P +G+++RI +P TEERR++L K A AE K Sbjct: 68 IIKPWEKNIIGEIERAIINSDLGFTPQNDGEIVRINIPPLTEERRISLTKQAKNEAEDGK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 IS+RN R+D D LK+ +K G SED V E+ +Q +T+ K ID E K+KEIM Sbjct: 128 ISIRNARKDANDQLKQLQKEG-ISEDDVKRGEDKVQSLTNDFTKKIDDILEHKEKEIM 184 >gi|256851266|ref|ZP_05556655.1| ribosome recycling factor [Lactobacillus jensenii 27-2-CHN] gi|260660690|ref|ZP_05861605.1| ribosome recycling factor [Lactobacillus jensenii 115-3-CHN] gi|282934734|ref|ZP_06339977.1| ribosome recycling factor [Lactobacillus jensenii 208-1] gi|297206133|ref|ZP_06923528.1| ribosome recycling factor [Lactobacillus jensenii JV-V16] gi|256616328|gb|EEU21516.1| ribosome recycling factor [Lactobacillus jensenii 27-2-CHN] gi|260548412|gb|EEX24387.1| ribosome recycling factor [Lactobacillus jensenii 115-3-CHN] gi|281301309|gb|EFA93610.1| ribosome recycling factor [Lactobacillus jensenii 208-1] gi|297149259|gb|EFH29557.1| ribosome recycling factor [Lactobacillus jensenii JV-V16] Length = 185 Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 70/173 (40%), Positives = 113/173 (65%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K+ M +I+ +K++ +R G + S+L+ VKV+ YG PL Q+++VT+ E R+L+V+ Sbjct: 10 KENMDKSIAVYQKELGNIRAGVANASLLEGVKVDYYGVPTPLTQMSSVTIPEARVLLVTP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +DK + ++E + S+LGL P +G V+R+ +P+ T ERR + K AE++KI++R Sbjct: 70 YDKSSLDNIEHALLASDLGLTPANDGNVIRLVIPQLTGERREEIAKQVGKQAEQAKIAIR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 N+RR+ MD LKK K+G +ED LE D+QK+TD K +D +EK+KEI Sbjct: 130 NVRREAMDSLKKQEKNGDITEDEQKRLEKDVQKVTDDATKRVDQLADEKRKEI 182 >gi|86140791|ref|ZP_01059350.1| ribosome releasing factor [Leeuwenhoekiella blandensis MED217] gi|85832733|gb|EAQ51182.1| ribosome releasing factor [Leeuwenhoekiella blandensis MED217] Length = 187 Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 76/178 (42%), Positives = 108/178 (60%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++ M + ++ LKK +R G+ SPSML V V+ YGS PL QVANV + R + Sbjct: 9 LDGTEEAMQNAVNHLKKQFANIRAGKASPSMLGSVMVDYYGSQTPLAQVANVNTPDGRTI 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + W+K M+ +E+ I +NLG NP+ G+ + I VP TEERR LVK A A AE +K Sbjct: 69 SIQPWEKSMIQEIEKAIMNANLGFNPMNNGESVIINVPPLTEERRRDLVKQAKAEAEDAK 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 + VRN R++ + +KK K G A ED+ ++ E D+Q +TD IK ID K+KEI+ Sbjct: 129 VGVRNDRKNANNDIKKLEKDGLA-EDICSNAEVDVQDLTDKYIKRIDELLAVKEKEIL 185 >gi|153864070|ref|ZP_01997081.1| Ribosome recycling factor [Beggiatoa sp. SS] gi|152146433|gb|EDN72917.1| Ribosome recycling factor [Beggiatoa sp. SS] Length = 188 Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 71/177 (40%), Positives = 117/177 (66%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK D++ +R+GR S+L+ + V YG+ P+NQ+AN++V++PR L Sbjct: 10 KDAEERMDKSVKALKDDLIKIRSGRAHTSLLEHITVPYYGTDTPINQIANISVIDPRTLG 69 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+ ++K +++ VE+ I +S+LGLNP G +LR+P+P TEERR LVKV AEK+++ Sbjct: 70 VAPYEKNILSIVEKAIRDSDLGLNPTNVGNLLRVPLPPMTEERRRDLVKVVRHDAEKARV 129 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++RNIRRD LK+ S+D E IQK+T+ I +DS +EK+ ++M Sbjct: 130 AIRNIRRDANHDLKELMNDKDISKDEEHHGEEMIQKLTNKLIAQVDSVLQEKEAKLM 186 >gi|78188304|ref|YP_378642.1| ribosome recycling factor [Chlorobium chlorochromatii CaD3] gi|123580409|sp|Q3ATS6|RRF_CHLCH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|78170503|gb|ABB27599.1| ribosome recycling factor [Chlorobium chlorochromatii CaD3] Length = 186 Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 72/177 (40%), Positives = 108/177 (61%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q I+ +M + + ++ T+RTG+ + ++LD VKVEAYG +PL QV NV+V + L+ Sbjct: 8 QKIEPKMKKCLEAFQHEITTIRTGKATTTLLDRVKVEAYGQQMPLKQVGNVSVQDAHTLM 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V VWDK MV++ E+ I ++NLGLNP EGQ +R+ +P TEERR VK+ + E SK+ Sbjct: 68 VQVWDKSMVSATEKAIRDANLGLNPAAEGQSIRVSIPPLTEERRKEFVKLTKKFGEDSKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 S+RN+RRD + ++K K+ SED + D + K + K+KEIM Sbjct: 128 SLRNLRRDMIQDIEKLEKAKAVSEDEKNKGKKDADDLLHKYEKLLMDMITAKEKEIM 184 >gi|72383689|ref|YP_293044.1| ribosome recycling factor [Prochlorococcus marinus str. NATL2A] gi|123620292|sp|Q46GQ5|RRF_PROMT RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|72003539|gb|AAZ59341.1| ribosome recycling factor [Prochlorococcus marinus str. NATL2A] Length = 182 Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 71/177 (40%), Positives = 110/177 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q +K M +I +++ T+RTGR + S+LD + VE YG+ PL +A +T + + + Sbjct: 4 QELKTTMSKSIEAAQRNFNTIRTGRANTSLLDRISVEYYGAETPLKSLATITTPDSQTIA 63 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +D +AS+E+ I S+LG P +G+++RI VP TEERR K+A YAE+ K+ Sbjct: 64 IQPFDLGSLASIEKAIATSDLGFTPNNDGKIIRINVPPLTEERRKEFCKLASKYAEEGKV 123 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++RNIRR+ +D +KKS K G SED + IQK TD+ IK+I+ EK+ EI+ Sbjct: 124 ALRNIRREAIDRVKKSEKDGDLSEDQSRDEQETIQKETDNFIKDIEKKLSEKEAEIL 180 >gi|261416241|ref|YP_003249924.1| ribosome recycling factor [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372697|gb|ACX75442.1| ribosome recycling factor [Fibrobacter succinogenes subsp. succinogenes S85] gi|302325448|gb|ADL24649.1| ribosome recycling factor [Fibrobacter succinogenes subsp. succinogenes S85] Length = 177 Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 66/173 (38%), Positives = 115/173 (66%), Gaps = 3/173 (1%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 ++M I +++ +R G+ SP++L+ V+++ YG+ P++QVA ++V EPRML+V+ W Sbjct: 6 EKMDKAIEATEREFSKIRAGQASPAILNGVRIDYYGTPTPISQVAKISVPEPRMLLVTPW 65 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 +K++V ++++ I +N+GL P+ +G +R+ +P T ERR L K+A +AE ++++RN Sbjct: 66 EKQLVDTIDKAILAANIGLTPMKDGNCIRVTLPILTTERRKELAKIARKHAEDGRVAIRN 125 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 IRRD D LKK++ + SED V +++IQK TD I ID EK+ +I+ Sbjct: 126 IRRDANDALKKNK---EISEDEVKKQQDEIQKATDKAIAEIDRLLAEKEADIL 175 >gi|218133702|ref|ZP_03462506.1| hypothetical protein BACPEC_01571 [Bacteroides pectinophilus ATCC 43243] gi|217991077|gb|EEC57083.1| hypothetical protein BACPEC_01571 [Bacteroides pectinophilus ATCC 43243] Length = 183 Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 70/179 (39%), Positives = 111/179 (62%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 D+ +D+M ++ L +D T+R GR +P +LD ++V+ Y + PL QVAN++V E R+ Sbjct: 3 DIAIYEDKMKKSVEALLEDYKTIRAGRANPHILDKIRVDYYNTPTPLQQVANISVPEARI 62 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 + + WD ++ +E+ I S+LGL P +G+V+R+ PE TE+RR L K E + Sbjct: 63 IQIQPWDASLIKEIEKAIIVSDLGLTPNNDGKVIRLVFPELTEDRRKELSKDVKKKGENA 122 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 K+++RN+RRD D KK K+ + SED + E+ IQKITD I +D ++K KE+M Sbjct: 123 KVAIRNVRRDANDVFKKQNKANEISEDELKDAEDSIQKITDKYITEVDKCVDDKIKEVM 181 >gi|154506087|ref|ZP_02042825.1| hypothetical protein RUMGNA_03629 [Ruminococcus gnavus ATCC 29149] gi|153793586|gb|EDN76006.1| hypothetical protein RUMGNA_03629 [Ruminococcus gnavus ATCC 29149] Length = 183 Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 72/173 (41%), Positives = 108/173 (62%), Gaps = 1/173 (0%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 D+M TI+ L ++ +R GR +P +LD + V+ YG P+ Q AN++V E RM+ + W Sbjct: 10 DKMTKTINNLGSELAAIRAGRANPHVLDKLTVDYYGVPTPIQQAANISVPEARMIQIQPW 69 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 +K M+ +E+ I S++G+NP +G V+R+ PE TEERR LVK E +K+++RN Sbjct: 70 EKSMLKEIEKAILMSDIGINPTNDGTVVRLMFPELTEERRKELVKDVKKKGEAAKVAIRN 129 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 IRRDG D KK K + SED + LE+ +QK+TD I +D E K KE++ Sbjct: 130 IRRDGNDAFKK-LKGTEISEDGIKDLEDSLQKLTDKYIAEVDKAVEAKSKEVL 181 >gi|152995304|ref|YP_001340139.1| ribosome recycling factor [Marinomonas sp. MWYL1] gi|189044060|sp|A6VUS5|RRF_MARMS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|150836228|gb|ABR70204.1| ribosome recycling factor [Marinomonas sp. MWYL1] Length = 185 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 74/180 (41%), Positives = 108/180 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ +DRM ++ ++ +RTGR PS+LD VKV YGS PL+QVAN+TV + R L Sbjct: 6 LKDAEDRMSKAVASVESAFKKIRTGRAHPSILDSVKVNYYGSETPLSQVANITVEDARTL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VS W+ +V +E+ I +S+LGLNP G ++RIP+P TEE R K A AE + Sbjct: 66 GVSPWENNLVPEIEKAIMKSDLGLNPATNGNLIRIPMPALTEETRKNYFKQAKNEAENGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIRRD LK K + SED ++ +QK+TD + I+ K+K++M Sbjct: 126 IAIRNIRRDANGSLKDLVKEKEISEDDDRRGQDQVQKVTDKYVAQIEERLAAKEKDLMEI 185 >gi|118594910|ref|ZP_01552257.1| ribosome releasing factor [Methylophilales bacterium HTCC2181] gi|118440688|gb|EAV47315.1| ribosome releasing factor [Methylophilales bacterium HTCC2181] Length = 184 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 70/177 (39%), Positives = 114/177 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N +++M ++I LK ++ +RTGR +LD + V+ YGS LNQVA VT+ + + Sbjct: 6 KNTRNKMQNSIDALKGNLSKIRTGRAHTGVLDHINVDYYGSQTALNQVAGVTLGDATTIN 65 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + ++K M+A +E+ I ES+LGLNP G ++R+P+P TEERR L+KV + E +KI Sbjct: 66 IQPYEKTMIAVIEKAIRESDLGLNPATSGDLIRVPMPPLTEERRKDLIKVVKSEGENTKI 125 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++RN+RRD + LKK K + SED + ++QK+TD I ++D E K+K+++ Sbjct: 126 AIRNVRRDANEALKKLTKEKEISEDDERRAQEEVQKMTDQFIVSVDQTIETKEKDLL 182 >gi|153808675|ref|ZP_01961343.1| hypothetical protein BACCAC_02974 [Bacteroides caccae ATCC 43185] gi|149128501|gb|EDM19719.1| hypothetical protein BACCAC_02974 [Bacteroides caccae ATCC 43185] Length = 186 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 76/178 (42%), Positives = 110/178 (61%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L N +++M I +L++ + +R G+ S +LD ++V++YGS VP++ VA VT + R + Sbjct: 8 LDNAQEKMDMAIMYLEEALAHIRAGKASTRLLDGIRVDSYGSMVPISNVAAVTTPDARSI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK M +E+ I +S+LG+ P G+++RI +P TEERR L K E +K Sbjct: 68 TIKPWDKSMFRVIEKAIIDSDLGIMPENNGEIIRIGIPPLTEERRKQLAKQCKGEGETAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +SVRN RRDG+D LKK+ K G A ED + E +QKI D IK ID EK KEIM Sbjct: 128 VSVRNARRDGIDALKKAVKDGLA-EDEQKNAEAKLQKIHDKYIKQIDDMLAEKDKEIM 184 >gi|255693713|ref|ZP_05417388.1| ribosome recycling factor [Bacteroides finegoldii DSM 17565] gi|260620530|gb|EEX43401.1| ribosome recycling factor [Bacteroides finegoldii DSM 17565] Length = 186 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 76/178 (42%), Positives = 110/178 (61%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L N +++M + +L++ + +R G+ S +LD ++V++YGS VP++ VA VT + R + Sbjct: 8 LDNAQEKMDMAVMYLEEALAHIRAGKASTRLLDGIRVDSYGSMVPISNVAAVTTPDARSI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK M +E+ I +S+LG+ P G+V+RI +P TEERR L K E +K Sbjct: 68 TIKPWDKSMFRVIEKAIIDSDLGIMPENNGEVIRIGIPPLTEERRKQLAKQCKGEGETAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +SVRN RRDG+D LKK+ K G A ED + E +QKI D IK ID EK KEIM Sbjct: 128 VSVRNARRDGIDALKKAVKDGLA-EDEQKNAEAKLQKIHDKYIKQIDDMLAEKDKEIM 184 >gi|94985150|ref|YP_604514.1| ribosome recycling factor [Deinococcus geothermalis DSM 11300] gi|166230783|sp|Q1IZI9|RRF_DEIGD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|94555431|gb|ABF45345.1| ribosome recycling factor [Deinococcus geothermalis DSM 11300] Length = 183 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 71/176 (40%), Positives = 116/176 (65%), Gaps = 3/176 (1%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 + ++RMG I L+ ++ LRTGR +P +L V VE YGS +P++QVA++T + R LV+ Sbjct: 10 DARERMGKAIEALENNLSVLRTGRANPGILKKVMVEYYGSSMPIDQVASITTPDARTLVI 69 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 + WD+ + +E+ I +S+LGLNP +G + I +P TEERR LVK A YAE+++++ Sbjct: 70 TPWDRGALNPIEKAIRDSDLGLNPNNKGDTIFISLPMLTEERRKDLVKNAKNYAEEARVA 129 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +R+IR+ +D +KK G +D + E ++QKITD IK ++ F +K++EI+ Sbjct: 130 IRSIRKHALDEVKKVEGVG---DDEIKRAEAEVQKITDEYIKRVEDTFHKKEQEIL 182 >gi|332519130|ref|ZP_08395597.1| ribosome recycling factor [Lacinutrix algicola 5H-3-7-4] gi|332044978|gb|EGI81171.1| ribosome recycling factor [Lacinutrix algicola 5H-3-7-4] Length = 185 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 76/174 (43%), Positives = 105/174 (60%), Gaps = 3/174 (1%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K+ M I LKK + +R G+ SP+ML V V+ YGS PL+QVANV + R + + Sbjct: 13 KESMDAAIEHLKKQFLNIRAGKASPAMLGSVVVDYYGSKTPLSQVANVNTPDGRTITIQP 72 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 W+K M+ +E+ I +NLG NP+ G+ L I VP TEERRL L K A A AE +K+ VR Sbjct: 73 WEKGMIQEIEKAIMIANLGFNPMNNGESLIINVPPLTEERRLQLGKQAKAEAEDAKVGVR 132 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 N R+D + +K K ASED+ + E DIQ++T+ ++K ID K EIM Sbjct: 133 NARKDANNDIK---KVDDASEDLQKNAEADIQELTNKSVKKIDELLANKDAEIM 183 >gi|71066089|ref|YP_264816.1| ribosome recycling factor [Psychrobacter arcticus 273-4] gi|123648272|sp|Q4FRH6|RRF_PSYA2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|71039074|gb|AAZ19382.1| ribosome recycling factor [Psychrobacter arcticus 273-4] Length = 184 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 77/177 (43%), Positives = 112/177 (63%), Gaps = 1/177 (0%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ + RM T+ L+ +RTGR P ML V V YGS PLNQVA+V V + R L+ Sbjct: 7 QDGEARMQKTLEALESTFSKVRTGRAHPGMLSGVMVSYYGSDTPLNQVASVNVEDSRTLL 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +D+ MV ++++ I E++LGLNP+ V+R+P+P TEE R + K+A AE S++ Sbjct: 67 VQPFDRTMVQAIDKAIREADLGLNPMT-ADVIRVPMPALTEETRRDMQKLARGEAENSRV 125 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 S+RNIRRD M+ +K+ K + SED +DIQKITD I+ IDS +K+ ++M Sbjct: 126 SIRNIRRDMMNDIKELAKEKEISEDDEHRASDDIQKITDKYIETIDSRLSKKESDLM 182 >gi|167752630|ref|ZP_02424757.1| hypothetical protein ALIPUT_00885 [Alistipes putredinis DSM 17216] gi|167659699|gb|EDS03829.1| hypothetical protein ALIPUT_00885 [Alistipes putredinis DSM 17216] Length = 185 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 71/178 (39%), Positives = 114/178 (64%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L DRM TI L+++++ +R G+ SP++L+ V V+ YGS P++ VA+VTV + + + Sbjct: 7 LSEASDRMQKTIEHLEEELLNIRAGKASPTVLNGVFVDYYGSQTPISGVASVTVPDAKTI 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WDK ++ ++E+ I +SN+GL P G+ +R+ +P TEERR LVK AE ++ Sbjct: 67 LIQPWDKNLIRAIEKAIIDSNIGLTPSNNGEQIRLSIPPLTEERRKELVKQVRQEAETAR 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 IS+RN RRD ++ KK++K G SED E QK+ D K++D+ + K+KEIM Sbjct: 127 ISLRNARRDAVEAFKKAQKEG-MSEDEAKDGETQAQKLLDKFTKSLDAILDNKEKEIM 183 >gi|114321011|ref|YP_742694.1| ribosome recycling factor [Alkalilimnicola ehrlichii MLHE-1] gi|122311395|sp|Q0A7I3|RRF_ALHEH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|114227405|gb|ABI57204.1| ribosome recycling factor [Alkalilimnicola ehrlichii MLHE-1] Length = 185 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 74/174 (42%), Positives = 107/174 (61%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM +I + ++ +RTGR ++LD + V YG+ VPLNQ A+V V + R L V ++ Sbjct: 12 RMKKSIEAFRAELRKIRTGRAHTNLLDHISVTYYGTEVPLNQAASVKVEDARTLSVIPFE 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K MV VE+ I S+LGL P G V+RIP+P TE+RR LVKV + AE++++++RNI Sbjct: 72 KSMVPEVEKAIQSSDLGLTPTTAGTVIRIPMPPLTEDRRKELVKVVRSEAEQARVAIRNI 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD LK+ K + SED E+ IQK+TD +D +EK+KE+M Sbjct: 132 RRDANSDLKELLKEKEISEDEERGGEDAIQKLTDKYTGEVDRILQEKEKELMEI 185 >gi|329119073|ref|ZP_08247765.1| ribosome recycling factor [Neisseria bacilliformis ATCC BAA-1200] gi|327464812|gb|EGF11105.1| ribosome recycling factor [Neisseria bacilliformis ATCC BAA-1200] Length = 185 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 73/180 (40%), Positives = 114/180 (63%), Gaps = 1/180 (0%) Query: 6 DLQNIKD-RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D+Q + +M ++ LK+++ +RTGR +LD V+VE +GS VP++QV +VT+L+ R Sbjct: 4 DIQKTAESKMQRSLEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVGSVTLLDAR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 + V ++ M A +E+ I +SNLGLNP G ++R+P+P TEERR L+KV A AE+ Sbjct: 64 TIGVKPFESGMAAKIEKAIRDSNLGLNPASVGDLIRVPMPMLTEERRKDLIKVVRAEAEE 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++S+RN+RRD DH+KK K + SED E +QK+TD D K++++M Sbjct: 124 GRVSIRNVRRDANDHIKKLLKDKEVSEDEARRGEEAVQKLTDKYTAEADKILAAKEEDLM 183 >gi|34497654|ref|NP_901869.1| ribosome recycling factor [Chromobacterium violaceum ATCC 12472] gi|39932056|sp|Q7NVZ1|RRF_CHRVO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|34103510|gb|AAQ59872.1| ribosome recycling factor [Chromobacterium violaceum ATCC 12472] Length = 185 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 71/172 (41%), Positives = 107/172 (62%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M T+ K D+ +RTGR +LD V V+ YGS VP+NQVANVT+++ R + V W+ Sbjct: 12 KMQKTLEAFKNDLAKVRTGRAHTGILDHVMVDYYGSDVPVNQVANVTLIDARTIGVQPWE 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K M+A +E+ I +S+LGLNP G+++R+P+P TEERR L+KV AE ++++VRNI Sbjct: 72 KPMLAKIEKAIRDSDLGLNPASMGEIIRVPMPMLTEERRKDLIKVVRGEAEGARVAVRNI 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD K K +ED +++IQK+TD ID K+ +++ Sbjct: 132 RRDSNTEFKNLLKDKAITEDDERRGQDEIQKLTDKYTAEIDKMLATKEADLL 183 >gi|56707469|ref|YP_169365.1| ribosome recycling factor [Francisella tularensis subsp. tularensis SCHU S4] gi|110669940|ref|YP_666497.1| ribosome recycling factor [Francisella tularensis subsp. tularensis FSC198] gi|254370837|ref|ZP_04986842.1| ribosome recycling factor [Francisella tularensis subsp. tularensis FSC033] gi|60390229|sp|Q5NHX7|RRF_FRATT RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|122971071|sp|Q14JC9|RRF_FRAT1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|56603961|emb|CAG44949.1| ribosome recycling factor [Francisella tularensis subsp. tularensis SCHU S4] gi|110320273|emb|CAL08332.1| ribosome recycling factor [Francisella tularensis subsp. tularensis FSC198] gi|151569080|gb|EDN34734.1| ribosome recycling factor [Francisella tularensis subsp. tularensis FSC033] gi|282158613|gb|ADA78004.1| ribosome recycling factor [Francisella tularensis subsp. tularensis NE061598] Length = 185 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 69/178 (38%), Positives = 109/178 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ ++RM ++ L D+ +RTGR P +L V ++ YG P+ Q AN+TVL+ R L Sbjct: 6 LKDAENRMKKSLEVLADDLAKIRTGRAQPDLLAHVTIDYYGVETPITQAANITVLDARTL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ W+K + + +E+ I S+LGLNP G LR+P+P EERR LVK+ + E + Sbjct: 66 GITPWEKGLSSKIEKAILTSDLGLNPTNLGDSLRVPMPALNEERRKELVKLVKSETEAGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +S+RNIRRD +K+ K + +ED E+DIQKITD I D+ +K++++M Sbjct: 126 VSIRNIRRDANGDIKELLKEKEITEDQAKKAEDDIQKITDKMIAQADALAAKKEQDLM 183 >gi|77164329|ref|YP_342854.1| ribosome recycling factor [Nitrosococcus oceani ATCC 19707] gi|254434229|ref|ZP_05047737.1| ribosome recycling factor [Nitrosococcus oceani AFC27] gi|123594762|sp|Q3JCX2|RRF_NITOC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|76882643|gb|ABA57324.1| ribosome recycling factor [Nitrosococcus oceani ATCC 19707] gi|207090562|gb|EDZ67833.1| ribosome recycling factor [Nitrosococcus oceani AFC27] Length = 187 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 72/172 (41%), Positives = 109/172 (63%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM +++ LK+ LR R S+LD + V YG++VPLNQVANV+V + R L V+ W+ Sbjct: 14 RMDKSLNALKQAFARLRANRAHTSLLDHITVSYYGNNVPLNQVANVSVEDARTLTVTPWE 73 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 ++MV +E+ I S LGLNP+ G V+R+P+P TEERR +V++ AE +++++RNI Sbjct: 74 RQMVPVIEKAIMTSELGLNPVTAGTVIRVPLPVLTEERRREMVRLVRQEAEAARVAMRNI 133 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD +K+ K + SED E IQKITD+ I +D K++++M Sbjct: 134 RRDSNHTIKELIKEKEISEDDQRRAEEAIQKITDNHITQVDELLAVKEQDLM 185 >gi|307243333|ref|ZP_07525497.1| ribosome recycling factor [Peptostreptococcus stomatis DSM 17678] gi|306493280|gb|EFM65269.1| ribosome recycling factor [Peptostreptococcus stomatis DSM 17678] Length = 185 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 72/177 (40%), Positives = 112/177 (63%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 ++++M TI LK + T+R GR + SMLD V+V+ YG+ P+NQ+A + V E R+L + Sbjct: 8 QLEEQMEKTIEALKFEFGTIRAGRANASMLDKVRVDYYGTPTPVNQMAAIAVSEGRILTI 67 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 + WDK + ++E+ I ES++G+ P +G V+R+ VP TEERR L K A +E K+ Sbjct: 68 TPWDKSSIHTIEKAISESDVGIAPANDGSVIRLVVPPLTEERRKELAKKASKASESFKVR 127 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +RN RRD D +KK K+G+ +ED +++QK+TD IK I+ K+K+IM Sbjct: 128 IRNDRRDANDKIKKMEKAGELAEDDAKKAIDEVQKMTDKYIKTIEELTANKEKDIME 184 >gi|262039426|ref|ZP_06012733.1| ribosome recycling factor [Leptotrichia goodfellowii F0264] gi|261746562|gb|EEY34094.1| ribosome recycling factor [Leptotrichia goodfellowii F0264] Length = 185 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 72/178 (40%), Positives = 111/178 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ +DRM + K +R GR S SMLD V VEAYG PLNQV V+ E R+L Sbjct: 6 LKETEDRMHKALENTKDKFSHVRAGRASVSMLDGVSVEAYGVMTPLNQVGTVSAPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK ++ ++E+ I ++NLG NP +G+++R+ VPE TE+RR VK+ AE+ K Sbjct: 66 TIDPWDKSIIPAIEKVILQANLGFNPSNDGKIIRLVVPELTEDRRKEYVKLVKKEAEEGK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++RN+R+D + ++K K + +ED + S E +QK+TD I ID +K+KE++ Sbjct: 126 VAIRNVRKDVNNKIRKLEKDSEITEDELKSGEEKVQKMTDKFIAEIDDVLAKKEKELL 183 >gi|295136354|ref|YP_003587030.1| ribosome releasing factor [Zunongwangia profunda SM-A87] gi|294984369|gb|ADF54834.1| ribosome releasing factor [Zunongwangia profunda SM-A87] Length = 184 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 78/171 (45%), Positives = 107/171 (62%), Gaps = 4/171 (2%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M + IS L K ++ +R G+ SPSML V VE YGS PLNQVANV + R + V ++K Sbjct: 16 MQNAISHLNKQLLNIRAGKASPSMLGSVMVEYYGSLTPLNQVANVNAPDARTISVQPFEK 75 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 + ++E+GI ++NLG NP+ G+ + I VP TEERR LVK A + AE +K+ VRN R Sbjct: 76 GSIPNIEKGILQANLGFNPMNNGESVIISVPPLTEERRKQLVKQAKSEAEDAKVGVRNDR 135 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 + + LKK + SED+ + E DIQ++TD I ID E K+KEIM Sbjct: 136 KTANNELKKI----EVSEDLQKNAEADIQELTDKYIAKIDRILEAKEKEIM 182 >gi|62263467|gb|AAX78163.1| unknown protein [synthetic construct] Length = 220 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 69/178 (38%), Positives = 109/178 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ ++RM ++ L D+ +RTGR P +L V ++ YG P+ Q AN+TVL+ R L Sbjct: 32 LKDAENRMKKSLEVLADDLAKIRTGRAQPDLLAHVTIDYYGVETPITQAANITVLDARTL 91 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ W+K + + +E+ I S+LGLNP G LR+P+P EERR LVK+ + E + Sbjct: 92 GITPWEKGLSSKIEKAILTSDLGLNPTNLGDSLRVPMPALNEERRKELVKLVKSETEAGR 151 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +S+RNIRRD +K+ K + +ED E+DIQKITD I D+ +K++++M Sbjct: 152 VSIRNIRRDANGDIKELLKEKEITEDQAKKAEDDIQKITDKMIAQADALAAKKEQDLM 209 >gi|322390000|ref|ZP_08063539.1| ribosome recycling factor [Streptococcus parasanguinis ATCC 903] gi|321143313|gb|EFX38752.1| ribosome recycling factor [Streptococcus parasanguinis ATCC 903] Length = 185 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 69/178 (38%), Positives = 112/178 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+RM + L ++ T+R GR + S+LD + VE YG PLNQ+A++T+ E R+L Sbjct: 6 VEKAKERMTQSHQSLGREFGTIRAGRANASLLDRIFVEYYGVETPLNQLASITIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK + +E I+ +LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LITPFDKSSLKDIEHSINAFDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++RNIRRD MD KK K+ + +ED + LE +IQK+TD +K++D K+KE+M Sbjct: 126 VAIRNIRRDAMDEAKKQEKAKEITEDELKGLEKEIQKVTDDAVKHVDEMTAHKEKELM 183 >gi|29654680|ref|NP_820372.1| ribosome recycling factor [Coxiella burnetii RSA 493] gi|161830368|ref|YP_001597227.1| ribosome recycling factor [Coxiella burnetii RSA 331] gi|190569464|ref|ZP_03022332.1| ribosome recycling factor [Bacillus anthracis Tsiankovskii-I] gi|34924915|sp|Q83BV4|RRF_COXBU RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|189044053|sp|A9N8Q7|RRF_COXBR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|29541948|gb|AAO90886.1| ribosome recycling factor [Coxiella burnetii RSA 493] gi|161762235|gb|ABX77877.1| ribosome recycling factor [Coxiella burnetii RSA 331] gi|190559424|gb|EDV13441.1| ribosome recycling factor [Bacillus anthracis Tsiankovskii-I] Length = 185 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 68/174 (39%), Positives = 109/174 (62%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K RM ++ LK ++ LRT R PS+L+ +KV+ Y PL+QVA++ + PR L ++ Sbjct: 10 KSRMEKSLGSLKTELAKLRTCRAHPSLLEHIKVDYYNVETPLSQVASIAIENPRTLSITP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 W+K MV +E+ I +++LGLNP G V+R+P+P TEERR L +V AE +++++R Sbjct: 70 WEKNMVGPIEKAIQKADLGLNPATVGMVIRVPLPPLTEERRKELARVVREEAEHARVAIR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 NIRR+ + LK+ K + SED + IQK+TD+ I +D +K+ ++M Sbjct: 130 NIRREANNDLKELMKEKEISEDEERRAQTAIQKLTDAQIAEVDKMASQKEADLM 183 >gi|237743351|ref|ZP_04573832.1| ribosome Recycling Factor [Fusobacterium sp. 7_1] gi|256028469|ref|ZP_05442303.1| ribosome recycling factor (RRF) [Fusobacterium sp. D11] gi|260495029|ref|ZP_05815158.1| ribosome recycling factor [Fusobacterium sp. 3_1_33] gi|289766390|ref|ZP_06525768.1| ribosome Recycling Factor [Fusobacterium sp. D11] gi|229433130|gb|EEO43342.1| ribosome Recycling Factor [Fusobacterium sp. 7_1] gi|260197472|gb|EEW94990.1| ribosome recycling factor [Fusobacterium sp. 3_1_33] gi|289717945|gb|EFD81957.1| ribosome Recycling Factor [Fusobacterium sp. D11] Length = 190 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 75/179 (41%), Positives = 112/179 (62%), Gaps = 2/179 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +++M TI +K+ +R GR + SMLD VKV+ YGS VPLNQ+ V+ E R+L Sbjct: 9 VKECEEKMLKTIEAVKEKFTAIRAGRANVSMLDGVKVDNYGSEVPLNQIGTVSAPEARLL 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK +++ +E+ + +NLG+ P +G+V+R+ +PE T ERR VK+A AE K Sbjct: 69 VIDPWDKSLISKIEKALLAANLGMTPNNDGRVIRLVLPELTAERRKEYVKLAKNEAENGK 128 Query: 127 ISVRNIRRDGMDHLKK--SRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 I+VRNIR+D + LKK K SED + E +Q +TD +K ID +K+KEI Sbjct: 129 IAVRNIRKDINNRLKKLEKDKENPISEDELKKEETRVQTLTDKYVKEIDELLAKKEKEI 187 >gi|87118624|ref|ZP_01074523.1| ribosome recycling factor [Marinomonas sp. MED121] gi|86166258|gb|EAQ67524.1| ribosome recycling factor [Marinomonas sp. MED121] Length = 185 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 72/178 (40%), Positives = 113/178 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + ++RMG +I+ ++ +RTGR PS+LD V+++ YGS PL+QVAN+TV + R L Sbjct: 6 LLDAEERMGKSITAVETAFKKIRTGRAHPSILDSVRIDYYGSDTPLSQVANITVEDARTL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +S W+K +V +E+ I +S+LGLNP G ++RIP+P TEE R K A A AE ++ Sbjct: 66 GISPWEKNLVPEIEKAIMKSDLGLNPSTTGGLIRIPMPALTEETRKNYFKQAKAEAESAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +S+RNIRRD K K + SED ++ +QK+TD + ++ +K+K++M Sbjct: 126 VSIRNIRRDANAGFKSLVKEKEISEDDDRRAQDLVQKLTDKYVAEVEDRLAKKEKDLM 183 >gi|294671220|ref|ZP_06736073.1| hypothetical protein NEIELOOT_02930 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307048|gb|EFE48291.1| hypothetical protein NEIELOOT_02930 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 185 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 71/180 (39%), Positives = 115/180 (63%), Gaps = 1/180 (0%) Query: 6 DLQNIKD-RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D+Q + +M ++ LK+++ +RTGR +LD V+VE +GS VP++QV +VT+L+ R Sbjct: 4 DIQKTAESKMLRSLEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVGSVTLLDAR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 + V ++ M +E+ I +SNLGLNP G ++R+P+P TEERR L+KV AE+ Sbjct: 64 TIGVKPFESNMAGKIEKAIRDSNLGLNPASVGDLIRVPMPMLTEERRKDLIKVVRGEAEE 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++S+RN+RRD DH+K+ K + SED E +QK+TD+ I +D K++++M Sbjct: 124 GRVSIRNVRRDANDHIKRLLKDKEVSEDEARRGEEAVQKLTDNNIAEVDKILAAKEEDLM 183 >gi|300728352|ref|ZP_07061716.1| ribosome recycling factor [Prevotella bryantii B14] gi|299774388|gb|EFI71016.1| ribosome recycling factor [Prevotella bryantii B14] Length = 186 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 72/178 (40%), Positives = 116/178 (65%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ + +M +FL +++ +R GR + ++LD V+VE+YG VPLNQVANV V + R + Sbjct: 8 LKDAESKMQKASNFLAEELARVRAGRANVAILDGVRVESYGQMVPLNQVANVQVSDARTI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WD++ + +E+GI +S +G+ P G+++ + +P+ TEERR LVK + E++K Sbjct: 68 TIRPWDRKQIRDIEKGIIDSEVGVTPENNGEMVILRLPQPTEERRKELVKQCNKIGEQTK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 + +RNIR D D LKK+ K G SED+ E D+QK D IK++D+ +K+KEIM Sbjct: 128 VQIRNIRADIKDKLKKAVKDG-LSEDLEKDAETDLQKTHDKFIKDVDAILADKQKEIM 184 >gi|295094737|emb|CBK83828.1| ribosome recycling factor [Coprococcus sp. ART55/1] Length = 181 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 72/178 (40%), Positives = 111/178 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M ++ L+ + T+R GR +P++L+ +KVE YG P+ Q+AN+TV E R L Sbjct: 2 LTQYEEKMQKSVENLEAEYATIRAGRANPNILNKIKVEYYGVPTPMQQLANITVPEARTL 61 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V++ W+ +V +E+ I S+LG+ P +G+ + + PE TE+RR LVK E +K Sbjct: 62 VIAPWEPSLVKEIEKAIMNSDLGITPNNDGRNIILNFPELTEDRRKELVKDIKKKGEGAK 121 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++RNIRRD D +KK K+G SED + E+ IQK+TD + ID E K KEIM Sbjct: 122 VAIRNIRRDANDAIKKMEKNGDISEDELKDNEDKIQKLTDKYVGQIDKAVESKSKEIM 179 >gi|183221973|ref|YP_001839969.1| ribosome recycling factor [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189912041|ref|YP_001963596.1| ribosome recycling factor [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|190360250|sp|B0SDN4|RRF_LEPBA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238687812|sp|B0SM63|RRF_LEPBP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|167776717|gb|ABZ95018.1| Ribosome recycling factor [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780395|gb|ABZ98693.1| Ribosome recycling factor (Ribosome releasing factor; RRF) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 183 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 72/177 (40%), Positives = 116/177 (65%), Gaps = 2/177 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +++++ +M T+ LKKD T+RTG+ +P M++ V+V+ YG+ PLNQ+ + EPR++ Sbjct: 6 IKSMQSKMDKTVDALKKDFGTIRTGKANPMMVEDVRVDYYGTLTPLNQLGKIACPEPRVI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ ++K M+ +E+ I ++LGL P +G +RI +PE T ERR L KV AE+ K Sbjct: 66 LITPFEKGMLKDIEKAIFAASLGLTPNNDGSSIRINIPELTGERRKELAKVVKQKAEEKK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +++RNIRRD D LKK + + S+D V ++ IQKITDS I + +EK+KEI Sbjct: 126 VAIRNIRRDANDELKKHQ--SEMSQDEVKGHQDKIQKITDSYIAKLGDLEKEKEKEI 180 >gi|110596934|ref|ZP_01385224.1| ribosome recycling factor [Chlorobium ferrooxidans DSM 13031] gi|110341621|gb|EAT60081.1| ribosome recycling factor [Chlorobium ferrooxidans DSM 13031] Length = 186 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 72/177 (40%), Positives = 109/177 (61%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q + +M TI + ++ ++RTG+ + ++LD VKVEAYG +PL QV NV VL+ L+ Sbjct: 8 QKTEQKMKKTIEAFQHEIASIRTGKATTALLDRVKVEAYGQQMPLKQVGNVGVLDVHTLM 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V VWDK MV++ E+ I ++NLGLNP +GQ +R+ +P TEERR VK+ + E SKI Sbjct: 68 VQVWDKSMVSATEKAIRDANLGLNPSADGQNIRVSIPPLTEERRKEFVKLTRKFGEDSKI 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 S+RN+RRD + ++K K SED + + ++ + K + K+KEIM Sbjct: 128 SLRNLRRDMIHEIEKLEKDKAISEDDKNRGKKEADELLHKSEKQLTEIMSAKEKEIM 184 >gi|328675398|gb|AEB28073.1| Ribosome recycling factor [Francisella cf. novicida 3523] Length = 185 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 69/178 (38%), Positives = 110/178 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ ++RM ++ L D+ +RTGR P +L V ++ YG P++Q AN+TVL+ R L Sbjct: 6 LKDAENRMKKSLEVLADDLAKIRTGRAHPDLLAHVTIDYYGVETPISQAANITVLDARTL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ W+K + + +E+ I S+LGLNP G LR+P+P EERR LVK+ + E + Sbjct: 66 GITPWEKGLSSKIEKAILTSDLGLNPTNLGDSLRVPMPALNEERRKELVKLVKSETEAGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +S+RNIRRD +K+ K + +ED E+DIQKITD I D+ +K++++M Sbjct: 126 VSIRNIRRDANGDIKELLKEKEITEDQAKKAEDDIQKITDKMIAQADALAAKKEQDLM 183 >gi|325295600|ref|YP_004282114.1| ribosome-recycling factor [Desulfurobacterium thermolithotrophum DSM 11699] gi|325066048|gb|ADY74055.1| Ribosome-recycling factor [Desulfurobacterium thermolithotrophum DSM 11699] Length = 185 Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 71/178 (39%), Positives = 113/178 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ +RM + LK D LRTGR S +++ +KV+ YGS + + Q+A + V EP + Sbjct: 6 LKDADNRMKKAVEVLKTDFAGLRTGRASTVLVEDIKVDYYGSIMTIKQIAQIAVPEPTQI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WD ++ ++E+ I ES+LG+ P +G ++RI +P TEERR LVK A AE++K Sbjct: 66 TIQPWDVSVIPNIEKAIRESDLGVQPQRDGNIIRINLPPLTEERRKELVKKAGKMAEQAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 I++RNIR + M L K +K G SED + ++++QKITD K ID ++K++EI+ Sbjct: 126 IAIRNIRHEIMKELDKLKKEGGYSEDDIKRAKDELQKITDKHTKKIDELLQKKEEEIL 183 >gi|288924743|ref|ZP_06418680.1| ribosome recycling factor [Prevotella buccae D17] gi|315607757|ref|ZP_07882750.1| ribosome recycling factor [Prevotella buccae ATCC 33574] gi|288338530|gb|EFC76879.1| ribosome recycling factor [Prevotella buccae D17] gi|315250226|gb|EFU30222.1| ribosome recycling factor [Prevotella buccae ATCC 33574] Length = 186 Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 71/178 (39%), Positives = 113/178 (63%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++RM +L + + +R GR + ++LD +KVE+YG VPLNQVAN++ +PR + Sbjct: 8 LNEAQERMEMAAMYLDEQLARIRAGRANVAILDGIKVESYGMKVPLNQVANISTPDPRTI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WD++ + +E+ I +S++G+ P G+++R+ +P+ TEERR LVK + AEK+K Sbjct: 68 AIKPWDRKAIRDIEKAIMDSDVGITPENNGEIIRLGIPQPTEERRKELVKQCNKIAEKTK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 I VRN+R + + KK+ K G SED+ E+++QKI D IK +D K KEIM Sbjct: 128 IEVRNVRGELKEKFKKAIKDG-LSEDLEKDAEDELQKIHDKFIKKLDDLIAAKTKEIM 184 >gi|300114873|ref|YP_003761448.1| ribosome recycling factor [Nitrosococcus watsonii C-113] gi|299540810|gb|ADJ29127.1| ribosome recycling factor [Nitrosococcus watsonii C-113] Length = 185 Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 71/172 (41%), Positives = 109/172 (63%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM +++ LK+ LR R S+LD + V YG++VPLNQVAN+ V + R L V+ W+ Sbjct: 12 RMDKSLTALKQTFAKLRANRAHTSLLDHITVSYYGNNVPLNQVANIAVEDARTLTVTPWE 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 ++MV ++E+ I S LGLNP+ G V+R+P+P TEERR +V++ AE +++++RNI Sbjct: 72 RQMVPTIEKAIITSELGLNPVTAGTVIRVPLPVLTEERRREMVRLVRQEAEAARVAMRNI 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD +K+ K + SED E IQKITD+ I +D K++++M Sbjct: 132 RRDSNHTIKELIKEKEISEDDQRRAEEAIQKITDNHITQVDELLVVKEQDLM 183 >gi|320159761|ref|YP_004172985.1| ribosome recycling factor [Anaerolinea thermophila UNI-1] gi|319993614|dbj|BAJ62385.1| ribosome recycling factor [Anaerolinea thermophila UNI-1] Length = 185 Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 73/179 (40%), Positives = 118/179 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ + RM I L++++ +RTGR SP++++ ++VE YG PL Q+A+++ EPR+L Sbjct: 6 LKEAETRMKGAIQALEENLAGIRTGRASPALVERLQVEYYGVPTPLMQLASISAPEPRVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D + +E+ I S+LGL P +G+V+R+ +P TEERR LVKV HA E+S+ Sbjct: 66 MIRPFDTSSLRLIEKAIMASDLGLTPNNDGKVIRLNIPPLTEERRRELVKVVHARLEESR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 I+VRN+RRD + L+ K SED + E ++QK+TD I+ ID+ ++K+KEIM Sbjct: 126 IAVRNVRRDMVKDLRDFEKEKLISEDDLKKGEEELQKLTDRYIQEIDAIGQKKEKEIME 184 >gi|89255661|ref|YP_513022.1| ribosome recycling factor [Francisella tularensis subsp. holarctica LVS] gi|115314162|ref|YP_762885.1| ribosome recycling factor [Francisella tularensis subsp. holarctica OSU18] gi|118496843|ref|YP_897893.1| ribosome recycling factor [Francisella tularensis subsp. novicida U112] gi|134302594|ref|YP_001122565.1| ribosome recycling factor [Francisella tularensis subsp. tularensis WY96-3418] gi|156501611|ref|YP_001427676.1| ribosome recycling factor [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009898|ref|ZP_02274829.1| ribosome recycling factor [Francisella tularensis subsp. holarctica FSC200] gi|187932152|ref|YP_001892137.1| ribosome recycling factor [Francisella tularensis subsp. mediasiatica FSC147] gi|194324473|ref|ZP_03058245.1| ribosome recycling factor [Francisella tularensis subsp. novicida FTE] gi|254367052|ref|ZP_04983088.1| ribosome recycling factor [Francisella tularensis subsp. holarctica 257] gi|254368532|ref|ZP_04984548.1| ribosome recycling factor [Francisella tularensis subsp. holarctica FSC022] gi|254372207|ref|ZP_04987699.1| ribosome recycling factor [Francisella tularensis subsp. novicida GA99-3549] gi|254373690|ref|ZP_04989174.1| hypothetical protein FTDG_01699 [Francisella novicida GA99-3548] gi|290953220|ref|ZP_06557841.1| ribosome recycling factor [Francisella tularensis subsp. holarctica URFT1] gi|295313588|ref|ZP_06804177.1| ribosome recycling factor [Francisella tularensis subsp. holarctica URFT1] gi|122325794|sp|Q0BNT6|RRF_FRATO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|122501262|sp|Q2A5H9|RRF_FRATH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166230786|sp|A7N9R7|RRF_FRATF RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166230787|sp|A0Q4H4|RRF_FRATN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166230788|sp|A4IZU3|RRF_FRATW RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238691516|sp|B2SDZ4|RRF_FRATM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|89143492|emb|CAJ78668.1| ribosome recycling factor [Francisella tularensis subsp. holarctica LVS] gi|115129061|gb|ABI82248.1| protein-synthesizing GTPase [Francisella tularensis subsp. holarctica OSU18] gi|118422749|gb|ABK89139.1| ribosome recycling factor [Francisella novicida U112] gi|134050371|gb|ABO47442.1| ribosome recycling factor [Francisella tularensis subsp. tularensis WY96-3418] gi|134252878|gb|EBA51972.1| ribosome recycling factor [Francisella tularensis subsp. holarctica 257] gi|151569937|gb|EDN35591.1| ribosome recycling factor [Francisella novicida GA99-3549] gi|151571412|gb|EDN37066.1| hypothetical protein FTDG_01699 [Francisella novicida GA99-3548] gi|156252214|gb|ABU60720.1| ribosome recycling factor [Francisella tularensis subsp. holarctica FTNF002-00] gi|157121435|gb|EDO65626.1| ribosome recycling factor [Francisella tularensis subsp. holarctica FSC022] gi|187713061|gb|ACD31358.1| ribosome recycling factor [Francisella tularensis subsp. mediasiatica FSC147] gi|194321308|gb|EDX18794.1| ribosome recycling factor [Francisella tularensis subsp. novicida FTE] gi|328676312|gb|AEB27182.1| Ribosome recycling factor [Francisella cf. novicida Fx1] Length = 185 Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 69/178 (38%), Positives = 109/178 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ ++RM ++ L D+ +RTGR P +L V ++ YG P+ Q AN+TVL+ R L Sbjct: 6 LKDAENRMKKSLEVLADDLAKIRTGRAHPDLLAHVTIDYYGVETPITQAANITVLDARTL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ W+K + + +E+ I S+LGLNP G LR+P+P EERR LVK+ + E + Sbjct: 66 GITPWEKGLSSKIEKAILTSDLGLNPTNLGDSLRVPMPALNEERRKELVKLVKSETEAGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +S+RNIRRD +K+ K + +ED E+DIQKITD I D+ +K++++M Sbjct: 126 VSIRNIRRDANGDIKELLKEKEITEDQAKKAEDDIQKITDKMIAQADALAAKKEQDLM 183 >gi|39997016|ref|NP_952967.1| ribosome recycling factor [Geobacter sulfurreducens PCA] gi|47116992|sp|P61304|RRF_GEOSL RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|39983904|gb|AAR35294.1| ribosome recycling factor [Geobacter sulfurreducens PCA] gi|298506033|gb|ADI84756.1| ribosome recycling factor [Geobacter sulfurreducens KN400] Length = 185 Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 68/179 (37%), Positives = 111/179 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + ++K M ++ L+++ +RTGR + +LD ++V+ YG+ PLNQVA + V EPR + Sbjct: 6 INDMKSHMEKSVESLRREYQKVRTGRANTGLLDEIRVDFYGNPSPLNQVATLAVPEPRTI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + W+ +M+ +E+ I +NLG P +G+++RI +P TEERR +VK AE +K Sbjct: 66 TIQPWETKMIPVIEKAILNANLGFTPSNDGKLIRISLPPLTEERRKEIVKSLKKTAEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 I++RNIRRD +D LKK K K SED + E ++Q +T+ + +D K+KE+M Sbjct: 126 IAIRNIRRDAIDGLKKLEKDKKISEDDLKRAEKEVQDVTNVYVAKVDEVLAHKEKEVME 184 >gi|187478231|ref|YP_786255.1| ribosome recycling factor [Bordetella avium 197N] gi|123515019|sp|Q2L159|RRF_BORA1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|115422817|emb|CAJ49345.1| ribosome recycling factor [Bordetella avium 197N] Length = 186 Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 74/182 (40%), Positives = 115/182 (63%), Gaps = 1/182 (0%) Query: 4 VIDLQN-IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLE 62 V D++N + RM ++ LK ++ +RTGR +LD V+VE YGS VP+ QVAN+ +++ Sbjct: 3 VADIRNSAESRMSKSLDTLKVNLSKIRTGRAHAGILDHVQVEYYGSPVPVGQVANLNLVD 62 Query: 63 PRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 R + V ++K M +ER I +S+LGLNP+ G +R+P+P TEERR L KV + Sbjct: 63 ARTISVQPYEKHMAGPIERAIRDSDLGLNPVSLGDTIRVPMPALTEERRRDLTKVVRSEG 122 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 E +K++VRN+RR+ + LKK K SED ++++QK+TD + +ID +K+ E Sbjct: 123 EDAKVAVRNLRREANEALKKLVKDKIISEDDERRGQDEVQKLTDRAVADIDKMVTQKEAE 182 Query: 183 IM 184 IM Sbjct: 183 IM 184 >gi|41409043|ref|NP_961879.1| ribosome recycling factor [Mycobacterium avium subsp. paratuberculosis K-10] gi|118463206|ref|YP_882906.1| ribosome recycling factor [Mycobacterium avium 104] gi|254776160|ref|ZP_05217676.1| ribosome recycling factor [Mycobacterium avium subsp. avium ATCC 25291] gi|47116995|sp|P61307|RRF_MYCPA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166230799|sp|A0QJ18|RRF_MYCA1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|41397402|gb|AAS05262.1| Frr [Mycobacterium avium subsp. paratuberculosis K-10] gi|118164493|gb|ABK65390.1| ribosome recycling factor [Mycobacterium avium 104] Length = 185 Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 67/179 (37%), Positives = 110/179 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++M ++ + D+ T+RTGR +P M + ++ YG+ P+ Q+A++ V E R++ Sbjct: 6 LFDAEEKMEKAVAVARDDLSTIRTGRANPGMFSRIVIDYYGAATPITQLASINVPEARLV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ ++ V ++E I S+LG+NP +G ++R+ VP+ TEERR LVK A + E +K Sbjct: 66 VIKPYEASQVGAIETAIRNSDLGVNPTNDGTLIRVAVPQLTEERRRELVKQAKSKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +SVRNIRR M+ L + RK G+A ED V E D+ K T I ID + K+ E++ Sbjct: 126 VSVRNIRRKAMEELHRIRKDGEAGEDEVGRAEKDLDKTTHQYITQIDELVKHKEGELLE 184 >gi|255638439|gb|ACU19529.1| unknown [Glycine max] Length = 261 Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 68/177 (38%), Positives = 115/177 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ K RM TI ++ + ++RTGR +PSMLD ++VE YGS V L +A ++ + L+ Sbjct: 83 KDAKTRMDRTIDNVRTNFSSIRTGRANPSMLDKIQVEYYGSPVSLKSIAQISTPDASSLL 142 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +DK + ++E+ I S+LG+ P +G+++R+ +P+ T +RR L K+ AE+ K+ Sbjct: 143 VQPYDKSSLKAIEKAIVSSDLGMTPNNDGELIRLSIPQLTSDRRKELSKIVAKQAEEGKV 202 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++RNIRRD + K K K SED V L +D+QK+TD +K +D+ F++K+KE++ Sbjct: 203 ALRNIRRDALKAYDKLEKEKKLSEDNVKDLSSDLQKLTDEYMKKVDTIFKQKEKELL 259 >gi|288928495|ref|ZP_06422342.1| ribosome recycling factor [Prevotella sp. oral taxon 317 str. F0108] gi|288331329|gb|EFC69913.1| ribosome recycling factor [Prevotella sp. oral taxon 317 str. F0108] Length = 186 Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 76/178 (42%), Positives = 112/178 (62%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 LQ+ +DRM +L++ + +R GR + ++LD V+VE+YG VPLNQVANV+ + R + Sbjct: 8 LQDAQDRMEMAAMYLEEQLSRVRAGRANVAILDGVRVESYGMTVPLNQVANVSAPDARTI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + +DK+ + +E+ I +S++G+ P G+V+R+ +P+ TEERR L K + EKSK Sbjct: 68 AIKPFDKKAIRDIEKAIMDSDVGITPENNGEVIRLGIPQPTEERRRELTKQCNKIGEKSK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 I VRN+R + D LKK+ K G SED E +QK+ D IK ID E K KEIM Sbjct: 128 IEVRNVRAEIKDKLKKAIKDG-LSEDNEKDAEEKLQKLHDKFIKKIDELLEAKNKEIM 184 >gi|146281914|ref|YP_001172067.1| ribosome recycling factor [Pseudomonas stutzeri A1501] gi|145570119|gb|ABP79225.1| ribosome recycling factor [Pseudomonas stutzeri A1501] Length = 173 Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 73/171 (42%), Positives = 102/171 (59%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M T+ L +RTGR PS+LD V V YG+ PL QVANV + R L ++V+DK Sbjct: 1 MKKTLEALDHAFAKIRTGRAHPSILDSVMVSYYGADTPLRQVANVVAEDSRTLALTVFDK 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 M+ +VE+ I S+LGLNP G +R+P+P TEE R K A A AE ++++VRNIR Sbjct: 61 SMIQAVEKAIMTSDLGLNPATAGTTIRVPMPALTEETRKGYTKQARAEAENARVAVRNIR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RD + LK K + SED ++D+QK+TD + ID E K+ ++M Sbjct: 121 RDAIAQLKDLVKEKEISEDEERRGQDDVQKLTDKYVAEIDKALEGKEADLM 171 >gi|118489544|gb|ABK96574.1| unknown [Populus trichocarpa x Populus deltoides] Length = 286 Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 70/176 (39%), Positives = 115/176 (65%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 + K RM TI ++ + ++RTGR +PSMLD ++VE YG+ V L +A ++ + L+V Sbjct: 109 DAKGRMEKTIDTMRTNFNSVRTGRANPSMLDKIEVEYYGTPVSLKSIAQISTPDASSLLV 168 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 +DK + ++E+ I S+LGL P +G+V+R+ +P+ T ERR L K+ AE+ K++ Sbjct: 169 QPYDKSSLKAIEKAIVSSDLGLTPNNDGEVIRMSIPQLTSERRKELSKMVAKLAEEGKVA 228 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +RNIRRD + +K K K SED V L +D+QK+TD +K +D+ F++K+KE++ Sbjct: 229 LRNIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQKLTDEYMKKLDNIFKQKEKELL 284 >gi|260912507|ref|ZP_05919042.1| ribosome recycling factor [Prevotella sp. oral taxon 472 str. F0295] gi|260633386|gb|EEX51541.1| ribosome recycling factor [Prevotella sp. oral taxon 472 str. F0295] Length = 186 Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 75/178 (42%), Positives = 113/178 (63%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 LQ+ +DRM +L++ + +R GR + ++LD V+VE+YG VPLNQVANV+ + R + Sbjct: 8 LQDAQDRMEMAAMYLEEQLSRVRAGRANVAILDGVRVESYGMTVPLNQVANVSAPDARTI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + +DK+ + +E+ I +S++G+ P G+V+R+ +P+ TEERR L K + EK+K Sbjct: 68 AIKPFDKKAIRDIEKAIMDSDVGITPENNGEVIRLGIPQPTEERRRELAKQCNKIGEKTK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 I VRN+R + D LKK+ K G SED E+ +QK+ D IK ID E K KEIM Sbjct: 128 IEVRNVRAEIKDKLKKAIKDG-LSEDNEKDAEDKLQKLHDKFIKKIDELLEAKNKEIM 184 >gi|228473766|ref|ZP_04058511.1| ribosome recycling factor [Capnocytophaga gingivalis ATCC 33624] gi|228274787|gb|EEK13610.1| ribosome recycling factor [Capnocytophaga gingivalis ATCC 33624] Length = 184 Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 75/186 (40%), Positives = 117/186 (62%), Gaps = 6/186 (3%) Query: 1 MNQVID--LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 MN+ ID L++ K+ M +++ L+K ++ +R G+ SP ML V V+ YGS PL+QVANV Sbjct: 1 MNEEIDFILESTKEAMQGSLNHLEKSLLNIRAGKASPQMLGSVYVDYYGSQTPLSQVANV 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 + R + + W+K M++++E+ I +NLG NP+ G+ + I VP TEERR LVK A Sbjct: 61 NTPDSRTISIQPWEKNMLSTIEKAIMVANLGFNPMNNGETIIISVPPLTEERRKELVKQA 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 +E++KI VRN R++ +KK+ +AS+D+ E +QK+TD IK ID + Sbjct: 121 KGESEEAKIGVRNARQEANKDIKKT----EASDDVKKDAEERVQKLTDKYIKQIDEVLAK 176 Query: 179 KKKEIM 184 K+ EI+ Sbjct: 177 KEAEIL 182 >gi|93006537|ref|YP_580974.1| ribosome recycling factor [Psychrobacter cryohalolentis K5] gi|122415111|sp|Q1QA13|RRF_PSYCK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|92394215|gb|ABE75490.1| ribosome recycling factor [Psychrobacter cryohalolentis K5] Length = 184 Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 77/177 (43%), Positives = 112/177 (63%), Gaps = 1/177 (0%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ + RM T+ L+ +RTGR P ML V V YGS PLNQVA+V V + R L+ Sbjct: 7 QDGEARMQKTLEALESTFSKVRTGRAHPGMLTGVMVSYYGSPTPLNQVASVNVEDSRTLL 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +D+ MV ++++ I E++LGLNP+ V+R+P+P TEE R + K+A AE S++ Sbjct: 67 VQPFDRTMVQAIDKAIREADLGLNPMT-ADVIRVPMPALTEETRKDMQKLARGEAENSRV 125 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 S+RNIRRD M+ +K+ K + SED +DIQKITD I+ IDS +K+ ++M Sbjct: 126 SIRNIRRDMMNDIKELAKEKEISEDDERRASDDIQKITDKYIETIDSRLSKKETDLM 182 >gi|332307502|ref|YP_004435353.1| ribosome recycling factor [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174831|gb|AEE24085.1| ribosome recycling factor [Glaciecola agarilytica 4H-3-7+YE-5] Length = 185 Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 73/177 (41%), Positives = 107/177 (60%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 + + RM ++ L+ +RTGR PS+LD + V YG+ PL Q+ANV + R L + Sbjct: 8 DARQRMEKSVVALRGQFTKIRTGRAHPSLLDSIMVPYYGAPTPLKQLANVIAEDSRTLAL 67 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 +V+DK +VE+ I +S+LGLNP+ G V+RIP+P TEERR L++V AE +++ Sbjct: 68 TVFDKSAAQAVEKAIMQSDLGLNPMSAGTVIRIPMPALTEERRKDLIRVVRNEAEGGRVA 127 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 VRNIRRD +K+ K + SED E+ IQK+TD +K ID K+ E+M Sbjct: 128 VRNIRRDANGDIKELLKEKEISEDDAHRGEDAIQKLTDEFVKQIDEILAAKETELME 184 >gi|319937403|ref|ZP_08011810.1| flagellar biosynthetic protein flhB [Coprobacillus sp. 29_1] gi|319807769|gb|EFW04362.1| flagellar biosynthetic protein flhB [Coprobacillus sp. 29_1] Length = 181 Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 71/178 (39%), Positives = 115/178 (64%), Gaps = 4/178 (2%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ K++M +I K ++ T+RTGR +P+MLD V V YG PLNQ+A+++V+E R L Sbjct: 6 LEETKEKMDKSIDAFKNELSTVRTGRANPTMLDRVMVNYYGEKTPLNQMASISVVEGRQL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +DK + +E G++E++LGL P +G+V+RI VP TEE R VK A +AE +K Sbjct: 66 MIKPYDKSTLKDIEHGVYEADLGLAPQNDGEVIRINVPALTEETRRGYVKQAKKFAEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++RNIRR D + K+ +ED V + +QK+TD +K ID ++K++++M Sbjct: 126 VALRNIRRSANDDVDKA----GLTEDEVKQGKERVQKLTDEYVKIIDQLAKDKEEDLM 179 >gi|320335233|ref|YP_004171944.1| ribosome-recycling factor [Deinococcus maricopensis DSM 21211] gi|319756522|gb|ADV68279.1| Ribosome-recycling factor [Deinococcus maricopensis DSM 21211] Length = 180 Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 69/178 (38%), Positives = 111/178 (62%), Gaps = 3/178 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + + RM I L+ M LRTGR +P +L ++VE YGS +P++QVA++T + R L Sbjct: 5 FADTRARMTKAIEALENSMSVLRTGRANPGILKKIQVEYYGSTMPIDQVASITAPDARTL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WD+ + +E+ I +S+LGLNP +G + I +P TEERR L+K A YAE+ + Sbjct: 65 VIQPWDRGAINPIEKAIRDSDLGLNPNNKGDSIFISIPALTEERRKDLIKNAKGYAEEGR 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++RN+R+ +D +KK G +D + E +IQKITD IK +D + K+++I+ Sbjct: 125 VAIRNVRKSALDEIKKVEGVG---DDEIKRGEAEIQKITDEYIKKVDDVLDRKEQDIL 179 >gi|220909994|ref|YP_002485305.1| ribosome recycling factor [Cyanothece sp. PCC 7425] gi|254809507|sp|B8HL79|RRF_CYAP4 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|219866605|gb|ACL46944.1| ribosome recycling factor [Cyanothece sp. PCC 7425] Length = 182 Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 69/177 (38%), Positives = 111/177 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++D M ++ ++ T+RTGR + S+LD V VE YG+ PL +AN++ + + Sbjct: 3 LADVEDHMQKSVEATQRAFNTIRTGRANTSLLDRVTVEYYGAETPLRSLANISTPDSSTI 62 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + +D+ + +E+ I S+LGL P +G V+R+ +P T +RR LVK A AE+ K Sbjct: 63 AIQPFDRNSLNLIEKAISMSDLGLTPNNDGTVIRLNIPPLTSDRRKELVKTASKLAEEGK 122 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +S+RN+RRD +D +KK K+G+ SED V L++ IQK+TD I +D EK+K+I Sbjct: 123 VSIRNVRRDAVDSVKKQGKAGELSEDEVKDLQDKIQKLTDKYIAKVDGLLAEKEKDI 179 >gi|226945938|ref|YP_002801011.1| ribosome recycling factor [Azotobacter vinelandii DJ] gi|259494533|sp|C1DSU3|RRF_AZOVD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226720865|gb|ACO80036.1| ribosome recycling factor [Azotobacter vinelandii DJ] Length = 185 Score = 141 bits (356), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 71/177 (40%), Positives = 106/177 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM ++ L+ +RTGR PS+LD V V YG+ PL QVANV + R L Sbjct: 7 KDAQARMKKSLESLEHAFAKIRTGRAHPSILDGVMVSYYGADTPLRQVANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DK M+ +VE+ I S+LGLNP G +R+P+P TEE R + A A AE +++ Sbjct: 67 LTVFDKSMIQAVEKAIMTSDLGLNPATAGTTIRVPMPALTEETRKGYTRQARAEAESARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +VRNIRRD + LK K + SED +++QK+TD I +D E K+ ++M Sbjct: 127 AVRNIRRDALAQLKDLVKEKEISEDEERRAADEVQKLTDKAIAEVDKALEAKEADLM 183 >gi|322437107|ref|YP_004219319.1| ribosome recycling factor [Acidobacterium sp. MP5ACTX9] gi|321164834|gb|ADW70539.1| ribosome recycling factor [Acidobacterium sp. MP5ACTX9] Length = 194 Score = 141 bits (356), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 68/177 (38%), Positives = 111/177 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q +K R T+ + ++++ RTGR S MLD VKV+ YG+ P++QVA +T E ++++ Sbjct: 16 QQLKTRFEKTVDDFRANLLSARTGRASVHMLDQVKVDYYGTDTPISQVAQITTPEAQLIL 75 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W++ +V ++E+ I SN G NP+ +G+++R+P+P EERR VK E K Sbjct: 76 VQPWEQTLVTAIEKAIRTSNQGFNPMHDGRIIRVPIPPMNEERRKEAVKNLAGVLEGHKT 135 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 S+RNIRRDG + +KK+ K S D ++Q++TD+ IK ++ F+ K+KE+M Sbjct: 136 SMRNIRRDGNELIKKAAKDKLISADDEKRANEEVQQLTDAEIKRLEDLFKAKEKELM 192 >gi|109897577|ref|YP_660832.1| ribosome recycling factor [Pseudoalteromonas atlantica T6c] gi|123361091|sp|Q15WG0|RRF_PSEA6 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|109699858|gb|ABG39778.1| ribosome recycling factor [Pseudoalteromonas atlantica T6c] Length = 185 Score = 141 bits (356), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 73/177 (41%), Positives = 107/177 (60%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 + + RM ++ L+ +RTGR PS+LD + V YG+ PL Q+ANV + R L + Sbjct: 8 DARQRMEKSVLALRGQFTKIRTGRAHPSLLDSIMVPYYGAPTPLKQLANVIAEDSRTLAL 67 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 +V+DK +VE+ I +S+LGLNP+ G V+RIP+P TEERR L++V AE +++ Sbjct: 68 TVFDKSAAQAVEKAIMQSDLGLNPMSAGTVIRIPMPALTEERRKDLIRVVRNEAEGGRVA 127 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 VRNIRRD +K+ K + SED E+ IQK+TD +K ID K+ E+M Sbjct: 128 VRNIRRDANGDIKELLKEKEISEDDAHRGEDAIQKLTDEFVKQIDDILAAKETELME 184 >gi|288803716|ref|ZP_06409145.1| ribosome recycling factor [Prevotella melaninogenica D18] gi|302345756|ref|YP_003814109.1| ribosome recycling factor [Prevotella melaninogenica ATCC 25845] gi|288333805|gb|EFC72251.1| ribosome recycling factor [Prevotella melaninogenica D18] gi|302149258|gb|ADK95520.1| ribosome recycling factor [Prevotella melaninogenica ATCC 25845] Length = 186 Score = 141 bits (356), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 72/178 (40%), Positives = 114/178 (64%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +RM +L ++ +R GR + ++LD V+VE+YGS VPLNQVA+V V + R + Sbjct: 8 LNDASERMEMATMYLGDELQRIRAGRANVAILDGVRVESYGSKVPLNQVASVMVPDARTI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK+ + +E+ I +S++G+ P G+++R+ +P+ TEERR LVK + E++K Sbjct: 68 AIKPWDKKAIKDIEKAIMDSDVGITPENNGELIRLNLPQPTEERRRDLVKQCNKIGERTK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 + +RN+R D + LKK+ K G SED E +QKI D IK +D+ E+K+KEIM Sbjct: 128 VEIRNVRSDIKEKLKKAIKDG-LSEDNEKDAEESLQKIHDKFIKQVDTLLEDKQKEIM 184 >gi|187251116|ref|YP_001875598.1| ribosome recycling factor [Elusimicrobium minutum Pei191] gi|186971276|gb|ACC98261.1| Ribosome recycling factor [Elusimicrobium minutum Pei191] Length = 187 Score = 141 bits (356), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 69/171 (40%), Positives = 114/171 (66%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M D + LK+D+ T+RTGR S +++ ++V+ YG+ PL Q+A + V + R L +S WD Sbjct: 15 MNDHVERLKRDLGTIRTGRASTQLIENIRVDYYGTPTPLKQMAMINVTDARTLEISPWDI 74 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 + +++ + +++LG +P+ +G+++RI +P TE+RR LVK +E K++VRN R Sbjct: 75 SALNEIDKTLQKADLGASPVNDGKIIRIVLPNMTEDRRKMLVKNVSKMSEDFKVAVRNER 134 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RD ++ LKK++K+G+ +ED + E DIQK TDST+ ID +K+KEIM Sbjct: 135 RDVLEKLKKAQKAGEITEDDLKRYEGDIQKATDSTVALIDKTISDKEKEIM 185 >gi|38234084|ref|NP_939851.1| ribosome recycling factor [Corynebacterium diphtheriae NCTC 13129] gi|47116991|sp|P61303|RRF_CORDI RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|38200346|emb|CAE50032.1| ribosome recycling factor [Corynebacterium diphtheriae] Length = 185 Score = 141 bits (356), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 65/175 (37%), Positives = 110/175 (62%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 ++ M ++ + +++ +RTGR +P+M + V + YG P+ Q+A ++V E RML++ Sbjct: 10 EEHMNTSVERTRDELVNIRTGRANPAMFNGVIADYYGVPTPITQMATISVPEARMLLIKP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 ++ M+ +E I S+LG+NP +GQVLR+ +P+ TEERR + K+A + E KI++R Sbjct: 70 YEMSMMNEIENAIRNSDLGVNPTNDGQVLRVTIPQLTEERRRDMAKLAKSKGEDGKIAIR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 N+RR GMD LKK +K G A ED V + E ++ K+T + +D +K+ E+M Sbjct: 130 NVRRKGMDQLKKIQKDGDAGEDEVQAAEKELDKVTAKYVAQVDEVVAKKEAELME 184 >gi|169333879|ref|ZP_02861072.1| hypothetical protein ANASTE_00265 [Anaerofustis stercorihominis DSM 17244] gi|169259444|gb|EDS73410.1| hypothetical protein ANASTE_00265 [Anaerofustis stercorihominis DSM 17244] Length = 185 Score = 141 bits (355), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 68/168 (40%), Positives = 111/168 (66%), Gaps = 1/168 (0%) Query: 6 DLQN-IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 ++QN K++M + L+ ++ LR GR +P MLD + V+ YG+ P+NQ+A+++ EPR Sbjct: 4 EVQNQAKEKMIKAVENLQSNLNALRAGRANPKMLDRIMVDYYGTPTPVNQMASISAPEPR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 L V WD+ + +E+ I S+LGLNP +G+V+R+ +P+ TEERR LVK+A E Sbjct: 64 TLTVQPWDQSALGLIEKAIMSSDLGLNPSNDGKVIRLVIPQLTEERRKELVKLAQKEGEN 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNI 172 +K++VRNIRR + LK +K G+ +ED + E+++QK+T+ IK + Sbjct: 124 AKVAVRNIRRHTIQTLKDEQKKGELTEDSLKDAEDEMQKLTNDYIKEV 171 >gi|120434469|ref|YP_860171.1| ribosome recycling factor [Gramella forsetii KT0803] gi|166230790|sp|A0LXJ3|RRF_GRAFK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|117576619|emb|CAL65088.1| ribosome recycling factor [Gramella forsetii KT0803] Length = 183 Score = 141 bits (355), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 77/178 (43%), Positives = 109/178 (61%), Gaps = 4/178 (2%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ K+ M I+ LKK + +R G+ SPSML V VE YGS PL QVANV + R L Sbjct: 8 LEEAKEGMEKAITHLKKQLSNIRAGKASPSMLGSVMVEYYGSQTPLQQVANVNTPDARTL 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + ++K ++ +ERGI +NLG NP+ G+ + I VP TEERR L K A A AE +K Sbjct: 68 SIQPFEKSLITEIERGIMLANLGFNPMNNGESVIINVPPLTEERRKQLSKQAKAEAEDAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 + VRN R+ M LKK+ SED++ S E+++Q++T++ I+ ID K+ EIM Sbjct: 128 VGVRNDRKQAMQELKKA----DISEDLLKSSEDEVQELTNTYIERIDKILTVKETEIM 181 >gi|325001877|ref|ZP_08122989.1| ribosome recycling factor [Pseudonocardia sp. P1] Length = 185 Score = 141 bits (355), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 64/179 (35%), Positives = 114/179 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++++M + + D+ +RTGR +PSM + V+ YG+ PLNQ+A+V++ E RM Sbjct: 6 LFDVEEKMEKAVGVARDDLTGVRTGRATPSMFSRIVVDYYGAATPLNQLASVSIPEARMA 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +D + ++E+ I ES+LG+NP +GQ++R+ +P+ +EERR +VKVA E ++ Sbjct: 66 VIKPYDASQLKAMEKAIAESDLGVNPSNDGQIIRVIIPQLSEERRRDMVKVARGKGEDAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 + +R +RR MD L + ++ G+A ED V E ++Q +TD + ID + K+ E++ Sbjct: 126 VVMRGLRRKAMDELHRIQRDGEAGEDEVVRGEKELQVLTDRYVAQIDELVKNKESELLE 184 >gi|163815219|ref|ZP_02206596.1| hypothetical protein COPEUT_01379 [Coprococcus eutactus ATCC 27759] gi|158449414|gb|EDP26409.1| hypothetical protein COPEUT_01379 [Coprococcus eutactus ATCC 27759] Length = 184 Score = 141 bits (355), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 71/178 (39%), Positives = 112/178 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M ++ L+ + T+R GR +P++L+ ++VE YG P+ Q+AN+TV E R L Sbjct: 5 LSQYEEKMQKSLDNLEAEYATIRAGRANPNILNKLRVEYYGVPTPMQQLANITVPEARTL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ W+ +V +E+ I S++G+ P +G+ + + PE TE+RR LVK E +K Sbjct: 65 MIAPWEPSLVKEIEKAIMNSDIGITPNNDGRNIILNFPELTEDRRKELVKDIKKKGEAAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++RNIRRD D +KK KSG SED +A E+ IQK+TD + ID E K KEIM Sbjct: 125 VAIRNIRRDANDAIKKMEKSGDISEDELADNEDKIQKLTDKYVGQIDKAVEAKSKEIM 182 >gi|319946529|ref|ZP_08020764.1| ribosome recycling factor [Streptococcus australis ATCC 700641] gi|319747275|gb|EFV99533.1| ribosome recycling factor [Streptococcus australis ATCC 700641] Length = 185 Score = 141 bits (355), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 66/178 (37%), Positives = 113/178 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+RM + L ++ ++R GR + S+LD + V+ YG PLNQ+A++T+ E R++ Sbjct: 6 VEKAKERMSQSHQSLGREFGSIRAGRANASLLDRIYVQYYGVDTPLNQIASITIPEARVM 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK + +E ++ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LITPFDKSSLKDIEHALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++RNIRRD MD KK K+ + +ED + LE +IQK+TD +K+ID K+KE++ Sbjct: 126 VAIRNIRRDAMDEAKKQEKAKEITEDELKGLEKEIQKVTDDAVKHIDEMTAHKEKELL 183 >gi|325955634|ref|YP_004239294.1| ribosome-recycling factor [Weeksella virosa DSM 16922] gi|323438252|gb|ADX68716.1| Ribosome-recycling factor [Weeksella virosa DSM 16922] Length = 184 Score = 141 bits (355), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 74/174 (42%), Positives = 107/174 (61%), Gaps = 3/174 (1%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K++M T+ L LR G+ SP+ML VK++ YGS PL+QVAN+ + + V Sbjct: 12 KEQMQKTMEHLDNAFGKLRAGKASPAMLSTVKIDYYGSVTPLSQVANINTPDAMTISVQP 71 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 W++ ++ +E+ I SNLG P G ++ I +P TEERR L K+A A AE +K+S+R Sbjct: 72 WERNLIGEIEKAIINSNLGFAPSNNGDMIIINIPPLTEERRKELSKLAKAEAEHAKVSIR 131 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 N R+D ++LK + SED+V ENDIQ +TD+ IKNID F +K+ EIM Sbjct: 132 NARKDANNNLKNIK---DISEDVVKGYENDIQDLTDNYIKNIDVAFAKKESEIM 182 >gi|225849796|ref|YP_002730030.1| ribosome recycling factor [Persephonella marina EX-H1] gi|225646194|gb|ACO04380.1| ribosome recycling factor [Persephonella marina EX-H1] Length = 184 Score = 141 bits (355), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 67/180 (37%), Positives = 115/180 (63%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ + RM + K+++ ++RTGR S +++ +KV+ YG+ +PL Q+A++T EP + Sbjct: 6 LKDAEKRMKKAVEKFKEELASIRTGRASVGLVENIKVDYYGAEMPLKQIASITTPEPSQI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WD+ V ++E+ + E+NLG NP EG ++R+ +P TEERR +VK+ AE+++ Sbjct: 66 LIQAWDQNAVPAIEKALQEANLGANPQTEGNLIRLILPPMTEERRREIVKMLGKMAEEAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIRRD + ++ +K G SED V +QKITD IK I+ K++EI+ Sbjct: 126 IAIRNIRRDDKERIEDLKKEG-FSEDEVKKALEQLQKITDKYIKQINDLATAKEEEILSI 184 >gi|281420570|ref|ZP_06251569.1| ribosome recycling factor [Prevotella copri DSM 18205] gi|281405343|gb|EFB36023.1| ribosome recycling factor [Prevotella copri DSM 18205] Length = 186 Score = 141 bits (355), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 72/178 (40%), Positives = 116/178 (65%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +RM +L +++ +R GR + ++LD V+V +YGS VPLNQVA VT + R + Sbjct: 8 LNSAAERMEMAAMYLAEELSHVRAGRANVAILDGVRVNSYGSMVPLNQVATVTTPDARTI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK+ + +E+ I +S +G+ P G+++R+ +P+ T ERR LVK + AE++K Sbjct: 68 AIRPWDKKAIKDIEKAIMDSGVGITPENNGEIVRLGIPQPTGERRKELVKQCNKIAERAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 I VRN+R++ + LKK+ K G SED+ END+QK+ D IK +++ +EK+KEIM Sbjct: 128 IEVRNVRQEIKEKLKKAIKDG-LSEDLEKDAENDLQKLHDKYIKQLENLMDEKEKEIM 184 >gi|299136134|ref|ZP_07029318.1| ribosome recycling factor [Acidobacterium sp. MP5ACTX8] gi|298602258|gb|EFI58412.1| ribosome recycling factor [Acidobacterium sp. MP5ACTX8] Length = 194 Score = 140 bits (354), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 70/177 (39%), Positives = 110/177 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + +K RM T + +++++RTGR S MLD VKV+ YG+ + QVA VT E ++V Sbjct: 16 EELKSRMDKTAEDFRANLLSVRTGRASVHMLDNVKVDYYGTETAIAQVAQVTTPEANLIV 75 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W++ +V ++E+ I S+ G NP+ +G+++R+P+P TEERR +K E K Sbjct: 76 VQPWEQSLVQAIEKAIRTSSQGFNPMHDGKIIRVPIPPMTEERRREGIKQLAGVLEDHKT 135 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 S+RNIRRDG + +KK+ K S D +IQ++TDS IK ++ F+ K+KE+M Sbjct: 136 SIRNIRRDGNETVKKAAKDKLISADDEKRANEEIQQLTDSQIKRVEDLFKAKEKEVM 192 >gi|297538506|ref|YP_003674275.1| ribosome recycling factor [Methylotenera sp. 301] gi|297257853|gb|ADI29698.1| ribosome recycling factor [Methylotenera sp. 301] Length = 185 Score = 140 bits (354), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 75/180 (41%), Positives = 110/180 (61%), Gaps = 1/180 (0%) Query: 6 DLQNIKD-RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D++ + D +M + LK D+ +RTGR +LD V VE YGS V +NQVANV + + R Sbjct: 4 DIKKVVDQKMQRALEALKTDLAKVRTGRAHTGLLDHVMVEYYGSMVAVNQVANVNLGDSR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 + V ++K M+ VE+ I + +LGLNP G ++R+P+P TEERR + K+ + AE Sbjct: 64 TIHVQPFEKSMIGKVEKAIRDCDLGLNPATNGDLIRVPMPMLTEERRRDMTKIVRSEAEG 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +K+SVRN RRD D LKK K + SED ++D+QK TD + ID + K+ E+M Sbjct: 124 AKVSVRNARRDANDTLKKLLKDKEISEDEERRAQDDVQKATDKAVAEIDKMLQVKEVELM 183 >gi|189500982|ref|YP_001960452.1| ribosome recycling factor [Chlorobium phaeobacteroides BS1] gi|238692272|sp|B3EMY2|RRF_CHLPB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|189496423|gb|ACE04971.1| ribosome recycling factor [Chlorobium phaeobacteroides BS1] Length = 186 Score = 140 bits (354), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 71/180 (39%), Positives = 110/180 (61%), Gaps = 6/180 (3%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q + +M ++ + ++ +RTG+ + ++LD VKV+AYG +PL Q+ NV V + L+ Sbjct: 8 QKAEAKMKKSVESFQHEIAAIRTGKATTALLDHVKVDAYGQTMPLKQIGNVGVQDAHTLM 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V VWDK MVA+ E+ I ++NLGLNP+ EGQ +R+ +P EERR VK+ Y E +KI Sbjct: 68 VQVWDKSMVAATEKAIRDANLGLNPVAEGQSIRVSIPPLNEERRKEYVKLTKKYGEDAKI 127 Query: 128 SVRNIRRD---GMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++RN+RR+ G D L+K ++ G ED A+ + D + K I +K+KEIM Sbjct: 128 ALRNLRREMLHGADKLEKDKEIG---EDAKANCKKDADNLVHKYEKQISDMIVQKEKEIM 184 >gi|309791083|ref|ZP_07685618.1| ribosome recycling factor [Oscillochloris trichoides DG6] gi|308226867|gb|EFO80560.1| ribosome recycling factor [Oscillochloris trichoides DG6] Length = 185 Score = 140 bits (354), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 71/171 (41%), Positives = 112/171 (65%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M LK + T+RTGR S M++ ++VEAYG+H+PLNQ+AN++V E R++V+ +D Sbjct: 13 MRKATEALKHHLATIRTGRASSGMVEHLQVEAYGTHMPLNQLANISVPESRLIVIQPFDN 72 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 M+ +E+ I S+L +NP +G+V+R+ VP+ TEERR +VK+ E+ KISVRN R Sbjct: 73 GMIKIIEKAIQNSDLSINPSNDGRVIRLAVPQLTEERRREMVKMVRHRVEEVKISVRNQR 132 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RD +D LK+ + SED + + IQ++T+ T K++D EK+ E++ Sbjct: 133 RDAIDDLKQLEEEKLISEDDLHRGQERIQQLTERTSKDLDQIGSEKEAEVL 183 >gi|258647586|ref|ZP_05735055.1| ribosome recycling factor [Prevotella tannerae ATCC 51259] gi|260852386|gb|EEX72255.1| ribosome recycling factor [Prevotella tannerae ATCC 51259] Length = 186 Score = 140 bits (354), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 70/178 (39%), Positives = 110/178 (61%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + + +M ++ L++ + +R GR + +LD +++ +YGS VPLN VA +T + R + Sbjct: 8 LADCEKKMDASVMHLEETLAQIRAGRANVHILDAIRINSYGSMVPLNNVAAITTPDARTI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK M A +E+ I +S +G+ P G+V+R+ +P TEERR L K + E++K Sbjct: 68 AIKPWDKSMFAPIEKAIIDSEVGIMPENNGEVIRLAIPALTEERRKQLAKQCNKEGEEAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++RN RR+G D LKK+ K G SED E D+QKI D +K +D+ EK KEIM Sbjct: 128 MAIRNARREGNDKLKKALKDG-LSEDSEKDAEADLQKIHDRKVKQVDTLLAEKNKEIM 184 >gi|295396951|ref|ZP_06807073.1| ribosome recycling factor [Aerococcus viridans ATCC 11563] gi|294974804|gb|EFG50509.1| ribosome recycling factor [Aerococcus viridans ATCC 11563] Length = 186 Score = 140 bits (354), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 71/179 (39%), Positives = 112/179 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ KDRM + + + +R G + S+LD + VE YG L Q+A +T+ EPRML Sbjct: 7 LKETKDRMVKSEEAFTRTLARIRAGVANASLLDGITVEYYGVPTDLRQLATITIPEPRML 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +S +DK + +ER + +S+LG+ P +G V+R+ +P T+ERR L K E +K Sbjct: 67 QISPYDKSSLNDIERALQQSDLGIPPTNDGSVIRLIIPALTQERRKELSKTVGKDLEDAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 I++RNIRRD +D KK+ K+ + +ED V S E+DIQ +T++ IKN++ +K+ EIM+ Sbjct: 127 IAIRNIRRDAIDETKKAEKAKEITEDDVRSYESDIQDLTNAAIKNVEKIASDKEDEIMN 185 >gi|225375366|ref|ZP_03752587.1| hypothetical protein ROSEINA2194_00991 [Roseburia inulinivorans DSM 16841] gi|225212855|gb|EEG95209.1| hypothetical protein ROSEINA2194_00991 [Roseburia inulinivorans DSM 16841] Length = 183 Score = 140 bits (354), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 73/178 (41%), Positives = 109/178 (61%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++M T++ L ++ ++R GR +P +LD ++V+ YG+ P+ QVANV V EPRM+ Sbjct: 5 LVQFDEKMQKTMNNLSEEFGSIRAGRANPHVLDKLRVDYYGTPTPIQQVANVNVPEPRMI 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + W+ MV +E+ I S+LG+NP +G+ +R+ PE TEERR L K E +K Sbjct: 65 QIQPWEASMVKEIEKVIMTSDLGINPTNDGKTIRLLFPELTEERRKDLAKDVKKKGESAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++RNIRRD D KK K SED + +LE + QK+TD I +D E K KEI+ Sbjct: 125 VAIRNIRRDANDSFKKLAKED-VSEDEIKALEENAQKMTDKYIAAVDEAVEVKTKEIL 181 >gi|7388105|sp|P82231|RRFC_SPIOL RecName: Full=Ribosome-recycling factor, chloroplastic; Short=RRF; AltName: Full=CpFrr; AltName: Full=RRFHCP; AltName: Full=Ribosome-releasing factor, chloroplastic; Flags: Precursor gi|4689034|emb|CAB41419.1| chloroplast ribosome recycling factor protein [Spinacia oleracea] Length = 271 Score = 140 bits (354), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 69/176 (39%), Positives = 113/176 (64%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 N K RM TI ++ + ++RT R SP+MLD ++VE YG+ V L +A ++ + L++ Sbjct: 94 NTKQRMEKTIETIRSNFNSVRTNRASPTMLDRIEVEYYGTPVSLKSIAQISTPDASSLLI 153 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 S +DK + ++E+ I S LG++P +G+V+R+ +P T +RR L KV AE+ K++ Sbjct: 154 SPYDKSSLKAIEKAIVTSQLGVSPNNDGEVIRLSLPPLTSDRRKELAKVVSKLAEEGKVA 213 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 VRNIRRD + +K K K SED V L D+QK+TD +K ++S +++K++E+M Sbjct: 214 VRNIRRDALKSYEKLEKEKKLSEDNVKDLSADLQKLTDEYMKKVESIYKQKEQELM 269 >gi|33863513|ref|NP_895073.1| ribosome recycling factor [Prochlorococcus marinus str. MIT 9313] gi|39932089|sp|Q7V6C1|RRF_PROMM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|33640962|emb|CAE21420.1| Ribosome recycling factor [Prochlorococcus marinus str. MIT 9313] Length = 182 Score = 140 bits (354), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 66/177 (37%), Positives = 111/177 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q +KD M ++ +++ T+RTGR +PS+LD + VE YG+ PL +A ++ + + + Sbjct: 4 QELKDNMHKSVEATQRNFATIRTGRANPSLLDRINVEYYGTETPLKSLATISTPDSQTIA 63 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +D + +E+ I S+LGL P +G+++RI VP TEERR K+A YAE+ K+ Sbjct: 64 IQPFDNGSMGLIEKAIATSDLGLTPNNDGKIIRINVPPLTEERRKEFCKLAARYAEEGKV 123 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++RNIRRD +D +KK K + S+D ++ IQK+TD+ I I+ + EK+ +I+ Sbjct: 124 ALRNIRRDAIDKVKKLEKDAELSKDQSHDEQDGIQKLTDTFITEIEKYLAEKEADIL 180 >gi|270290321|ref|ZP_06196546.1| ribosome recycling factor [Pediococcus acidilactici 7_4] gi|270281102|gb|EFA26935.1| ribosome recycling factor [Pediococcus acidilactici 7_4] Length = 186 Score = 140 bits (354), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 65/178 (36%), Positives = 116/178 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ +++M L++D+ ++R GR + S+LD V V+ YG+ PLNQ+A++++ EPR+L Sbjct: 7 LKTAEEKMHKAHQALERDLGSIRAGRANASLLDRVTVDYYGAPTPLNQMASISIPEPRVL 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK ++ +E+ + ++LG+NP +G +R+ +P+ TEE R L K A EK K Sbjct: 67 LITPYDKSVLNDIEQALLVADLGINPANDGSAIRLVIPQLTEETRKELAKDVKAEGEKGK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++RN+RR+ M+ LKK+ K+G ++D LE Q ITD IK ++ K+KE++ Sbjct: 127 VAIRNVRREAMEALKKAHKNGDYNDDEFHDLEKQAQDITDKAIKKVEEIVANKEKEVL 184 >gi|332970849|gb|EGK09828.1| ribosome recycling factor [Psychrobacter sp. 1501(2011)] Length = 184 Score = 140 bits (354), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 75/173 (43%), Positives = 110/173 (63%), Gaps = 1/173 (0%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM ++ L+ +RTGR P ML V V YG+ PLNQVA+V V + R L+V ++ Sbjct: 12 RMKKSLEALENAFSKVRTGRAHPGMLSGVMVNYYGADTPLNQVASVNVEDSRTLLVQPFE 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + MV +V++ I E++LGLNP+ V+R+P+P TEE R + K+A AE S++SVRN+ Sbjct: 72 RSMVQAVDKAIREADLGLNPMT-ADVIRVPMPALTEETRRDMQKLARGEAENSRVSVRNV 130 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 RRD ++ +K+ K + SED +DIQK+TD I +IDS E K+KE+M Sbjct: 131 RRDMLNDVKELAKEKEISEDEERRASDDIQKLTDKYIASIDSKLEAKEKELME 183 >gi|304383036|ref|ZP_07365512.1| ribosome recycling factor [Prevotella marshii DSM 16973] gi|304335819|gb|EFM02073.1| ribosome recycling factor [Prevotella marshii DSM 16973] Length = 186 Score = 140 bits (354), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 76/178 (42%), Positives = 110/178 (61%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++RM FL++ + +R GR + ++LD +KV +YGS VPLNQVANV V + R + Sbjct: 8 LSESEERMEMAAMFLEEQLARIRAGRANVAILDGIKVNSYGSMVPLNQVANVAVPDARTI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V WDK+ + +E+ I +S++G+ P G+++R+ +P+ TEERR L K A EK+K Sbjct: 68 TVRPWDKKAIKDIEKAIMDSDVGITPENNGEIIRLGIPQPTEERRRELSKQCKAIGEKAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 + VRN+R D + LKK+ K G SED E+ +QKI D IK ID K KEIM Sbjct: 128 VEVRNVRADVKEKLKKAIKDG-LSEDNEKDAEDALQKIHDRYIKKIDDLLVAKDKEIM 184 >gi|303258058|ref|ZP_07344066.1| ribosome recycling factor [Burkholderiales bacterium 1_1_47] gi|330998729|ref|ZP_08322458.1| ribosome recycling factor [Parasutterella excrementihominis YIT 11859] gi|302859077|gb|EFL82160.1| ribosome recycling factor [Burkholderiales bacterium 1_1_47] gi|329576468|gb|EGG57980.1| ribosome recycling factor [Parasutterella excrementihominis YIT 11859] Length = 186 Score = 140 bits (354), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 70/171 (40%), Positives = 107/171 (62%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M +I LK+++M +RTGR +L+ + V+ YG P++QVA + + + R + V W+K Sbjct: 14 MKRSIETLKENLMKIRTGRAHTGLLEHITVDYYGCPTPISQVAQLGLADARTITVQPWEK 73 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 +MVA VE+ I S+LGLNP G+V+R+P+P TEERR L KV + E++K+++RN+R Sbjct: 74 KMVAVVEKAIRNSDLGLNPATSGEVIRVPMPPLTEERRRDLTKVVRSEGEETKVAIRNLR 133 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RD + + K + SED +IQK+TD I +D EK+KEIM Sbjct: 134 RDANNKVAALVKEKEISEDDERRSNTEIQKLTDKYIGEVDKLIAEKEKEIM 184 >gi|254443219|ref|ZP_05056695.1| ribosome recycling factor [Verrucomicrobiae bacterium DG1235] gi|198257527|gb|EDY81835.1| ribosome recycling factor [Verrucomicrobiae bacterium DG1235] Length = 186 Score = 140 bits (354), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 64/156 (41%), Positives = 101/156 (64%) Query: 28 LRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESN 87 + TG+ +P M++ + VEAYGS + L ++A +T + R + + WDK ++ ++E+ I SN Sbjct: 28 VNTGKANPGMVEGISVEAYGSQMSLKEMAAITTPDARTIAIQPWDKSVIKAIEKAILTSN 87 Query: 88 LGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSG 147 +G+ P + G V+R+P+PE T ERR +LVKV AE ++++RN RRD MD +KK +K G Sbjct: 88 IGITPAIMGDVIRLPLPELTGERRQSLVKVVSKQAEDGRVAIRNSRRDAMDAIKKLQKDG 147 Query: 148 KASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 SED + E DIQ TD +IK I+ K+K++ Sbjct: 148 DISEDDLKRCEKDIQNTTDESIKKINDLLAAKEKDL 183 >gi|258591445|emb|CBE67746.1| Ribosome recycling factor (Ribosome-releasing factor) (RRF) [NC10 bacterium 'Dutch sediment'] Length = 185 Score = 140 bits (353), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 72/173 (41%), Positives = 109/173 (63%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M I K +RTGR S ++LD + VEAYGS VP+NQVA + V E R++ V WD Sbjct: 13 MRKAIDATLKGFNGVRTGRASLTLLDGLMVEAYGSIVPVNQVATLAVPETRLITVQPWDP 72 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 ++A++ER +S+LG++P +G+++RI +P TEERR LVK+ AE+ +++VRN+R Sbjct: 73 SLLAAIERAFRKSDLGVSPTNDGKMIRIAIPPLTEERRKELVKIVRKIAEEGRVAVRNVR 132 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 R+ + LK+ + + SED V + IQ +T+ I ID +K+KEIM F Sbjct: 133 REANEALKRHEREKEVSEDEVKHGADVIQDLTNRLIHEIDGLLAKKEKEIMEF 185 >gi|307298261|ref|ZP_07578065.1| ribosome recycling factor [Thermotogales bacterium mesG1.Ag.4.2] gi|306916347|gb|EFN46730.1| ribosome recycling factor [Thermotogales bacterium mesG1.Ag.4.2] Length = 184 Score = 140 bits (353), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 70/180 (38%), Positives = 115/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ ++RM ++ + ++ +RTGR SP++L+ VKV+ YG P+NQ+A +T E R L Sbjct: 5 LKDAENRMKKSVEKIVEEYAQMRTGRPSPALLESVKVDYYGVPTPINQIATITTTEDRSL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WD+ +++ VE+ I S L L PI +G +++ P T E+R VK+A AEK K Sbjct: 65 VIKPWDRSVLSQVEKAIFASKLDLTPINDGVNIKLNFPVPTTEQREKWVKIARDNAEKGK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIRRD + ++ K+ + +ED + E +IQ++T+ I+ +D FE+K KEIM F Sbjct: 125 IAIRNIRRDVIKEARELEKASEMTEDDLKKFEEEIQELTNRYIEEMDKAFEKKSKEIMDF 184 >gi|317051930|ref|YP_004113046.1| ribosome recycling factor [Desulfurispirillum indicum S5] gi|316947014|gb|ADU66490.1| ribosome recycling factor [Desulfurispirillum indicum S5] Length = 185 Score = 140 bits (353), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 69/175 (39%), Positives = 107/175 (61%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 +K++M + +KD TLRTGR S ++LD VKV+ YG+ PL Q +VT+ + + + Sbjct: 9 VKEKMQKAVEATRKDFSTLRTGRASTALLDNVKVDYYGTPTPLKQAGSVTIPDATTISIQ 68 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 W+ M+ ++E+ I +NLG+ P +GQ++RI +P TE+RR L + +AE +I+V Sbjct: 69 PWEPHMLPAIEKAIVAANLGVTPSNDGQMIRISIPPLTEDRRKELTRQVKKFAEDGRIAV 128 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RNIRR G D +K K +ED + ++QKITD +K ID E K+KE+M Sbjct: 129 RNIRRFGNDSVKALEKDKLITEDEAKRAQEEVQKITDGFVKTIDEMAEAKEKELM 183 >gi|222054617|ref|YP_002536979.1| ribosome recycling factor [Geobacter sp. FRC-32] gi|254809513|sp|B9M5C3|RRF_GEOSF RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|221563906|gb|ACM19878.1| ribosome recycling factor [Geobacter sp. FRC-32] Length = 185 Score = 140 bits (353), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 76/172 (44%), Positives = 111/172 (64%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M TI L+K+ +RTGR S S+LD +KV+ YG+ PLNQVA + V EPR + + WD Sbjct: 13 MDKTIDSLRKEYQKVRTGRASTSLLDEIKVDFYGTLSPLNQVATLAVPEPRTITLQPWDA 72 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 +M+ +E+ I +NLGL P +G+++R+ +P TEERR +VK +AE +K++VRNIR Sbjct: 73 KMIPPIEKAIMNANLGLTPANDGKLIRLNLPPLTEERRKEIVKQLKKFAEDAKVAVRNIR 132 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 R+ +D LKK K K SED + E D+Q +T+S + ID K+KE+M Sbjct: 133 REAIDDLKKLEKEKKISEDDLKRAEKDVQDVTNSHVARIDEVLLHKEKEVME 184 >gi|319789070|ref|YP_004150703.1| ribosome recycling factor [Thermovibrio ammonificans HB-1] gi|317113572|gb|ADU96062.1| ribosome recycling factor [Thermovibrio ammonificans HB-1] Length = 185 Score = 140 bits (353), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 70/178 (39%), Positives = 114/178 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ RM + LK D LRTGR S +++ +KV+ YGS + + Q+A ++V E + Sbjct: 6 LKDADKRMKKAVEVLKADFAGLRTGRASTVLVEDIKVDYYGSTMTIKQIAQISVPEANQI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WD +V +VE+ I ES+LG+ P +G ++R+ +P TEERR LVK A AE+++ Sbjct: 66 VIQPWDASVVPNVEKAIRESDLGVQPQRDGNIIRVILPPLTEERRKELVKKAGKMAEQAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 I++RNIR + M L K +K G SED + ++++QKITD K +D+ ++K++EI+ Sbjct: 126 IAIRNIRHEIMKELDKLKKEGGYSEDDIKRAKDELQKITDKYTKEVDNLLQKKEEEIL 183 >gi|271963401|ref|YP_003337597.1| ribosome recycling factor [Streptosporangium roseum DSM 43021] gi|270506576|gb|ACZ84854.1| ribosome recycling factor [Streptosporangium roseum DSM 43021] Length = 185 Score = 140 bits (353), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 69/179 (38%), Positives = 110/179 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M +S K D +RTGRV+PSM + + E YG+ P+ Q+A+ V E RM+ Sbjct: 6 LLEAEEKMDKAVSVAKDDFAGIRTGRVTPSMFNKISAEYYGTPTPIQQLASFHVPEARMV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +DK +A++E+ I S+LG+NP +GQV+R+ PE +EERR +KVA AE+SK Sbjct: 66 IIQPFDKGSMAAIEKAIRNSDLGVNPGNDGQVIRVAFPELSEERRREYIKVARNKAEQSK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +S+RNIRR+ + L K K +A ED V E ++ +T + ID + K+ E++ Sbjct: 126 VSIRNIRRNAKETLDKMVKDSEAGEDEVRRAEKELDDLTQKHVAKIDELLKHKEAELLE 184 >gi|126662970|ref|ZP_01733968.1| ribosome recycling factor (ribosome releasing factor) [Flavobacteria bacterium BAL38] gi|126624628|gb|EAZ95318.1| ribosome recycling factor (ribosome releasing factor) [Flavobacteria bacterium BAL38] Length = 187 Score = 140 bits (353), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 77/178 (43%), Positives = 110/178 (61%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + K+ M +++ L+K+ + +R G+ SP ML V V+ YGS PL+QVAN+ + R L Sbjct: 9 LDSAKEAMIGSVAHLEKEFLNIRAGKASPQMLGGVFVDYYGSQTPLSQVANINAADARTL 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ W+K M+ +E+ I +NLGLNP+ G + I +P TEERR LVK A + AE +K Sbjct: 69 TVTPWEKNMLHPIEKAIMIANLGLNPMNNGDNIIINIPALTEERRRDLVKQAKSEAEDAK 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 I +RN R+D +KK K G A ED+ E D+QK+TDS IK I+ K+ EIM Sbjct: 129 IGIRNHRKDANSDIKKEEKEGTA-EDICKKAEEDVQKLTDSFIKKIEELLAVKEAEIM 185 >gi|256419436|ref|YP_003120089.1| ribosome recycling factor [Chitinophaga pinensis DSM 2588] gi|256034344|gb|ACU57888.1| ribosome recycling factor [Chitinophaga pinensis DSM 2588] Length = 187 Score = 140 bits (353), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 72/171 (42%), Positives = 108/171 (63%), Gaps = 1/171 (0%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M I L+ ++ +R G+ +P +LD + V+ YGS PL QVAN+TV + R L V W+K Sbjct: 16 MRKAIGHLESELTKIRAGKANPQILDGITVDYYGSPTPLAQVANITVADARTLTVQPWEK 75 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 M+ +ER I SN+G+NP +G ++R+ +P TEERR VK A E++KI++RNIR Sbjct: 76 NMLQPIERAIIASNIGINPQNDGIIIRMFLPPLTEERRKEFVKRALNEGEQAKIAIRNIR 135 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RD ++ +KK +K G SED E D+Q +T+ I+ +D +K+KEIM Sbjct: 136 RDAIEGIKKLQKDG-LSEDTAKDAEADVQNLTNKYIELVDKHTAQKEKEIM 185 >gi|50084551|ref|YP_046061.1| ribosome recycling factor [Acinetobacter sp. ADP1] gi|60390252|sp|Q6FCH2|RRF_ACIAD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|49530527|emb|CAG68239.1| ribosome releasing factor [Acinetobacter sp. ADP1] Length = 184 Score = 140 bits (353), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 76/172 (44%), Positives = 109/172 (63%), Gaps = 1/172 (0%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM T+ L++ +RTGR PS+L+ V V YGS VPLNQVANV + + R LVV ++ Sbjct: 12 RMQKTLESLEQGFAKVRTGRAHPSILNGVMVPYYGSDVPLNQVANVGIEDSRTLVVQPFE 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + MV+++++ I ES+LGLNPI +R+P+P TEE R + KVA + AE +K+++RNI Sbjct: 72 RTMVSAIDKAIRESDLGLNPIT-ADSIRVPLPALTEETRRDMQKVARSEAENAKVAIRNI 130 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD + LK K + SED +DIQKITD + +D K+ E+M Sbjct: 131 RRDVLGDLKSLLKDKEISEDDERRAGDDIQKITDKYVAEVDKRLAAKEAELM 182 >gi|187917999|ref|YP_001883562.1| ribosome recycling factor [Borrelia hermsii DAH] gi|238689276|sp|B2RZI6|RRF_BORHD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|119860847|gb|AAX16642.1| ribosome recycling factor [Borrelia hermsii DAH] Length = 184 Score = 140 bits (353), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 71/177 (40%), Positives = 112/177 (63%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 + ++M + L + +LRTGR+S ++ D V V+ YG PL +VAN+++ E R++V+ Sbjct: 8 LDEKMDRVLLSLDSEYKSLRTGRISSALFDKVLVDYYGEKTPLTRVANISIPEARLIVIQ 67 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 WDK +++ +E+ I S+L +NP +G VLRI VP T ERR +VK A AE+ K++ Sbjct: 68 PWDKSLLSKIEQAILSSDLSMNPSSDGSVLRIKVPVLTVERRKEIVKQAKKIAEEYKVAA 127 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RN+R++ + KK K + +ED + + +DIQ+ T+S IK ID F+ K KEIM F Sbjct: 128 RNVRQELNNKAKKQEKDSQITEDDLRRILDDIQRDTNSYIKKIDEIFDLKTKEIMEF 184 >gi|307546391|ref|YP_003898870.1| ribosome recycling factor [Halomonas elongata DSM 2581] gi|307218415|emb|CBV43685.1| K02838 ribosome recycling factor [Halomonas elongata DSM 2581] Length = 185 Score = 140 bits (353), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 72/174 (41%), Positives = 103/174 (59%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM ++ L + +RTGR PS+LD V VE YGS +P+NQVA+V V + R L V W+ Sbjct: 12 RMKKSLEALHNNFNKIRTGRAHPSILDAVTVEYYGSQMPINQVASVNVEDARTLTVVPWE 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + MV VE+ I + LGLNP G V+R+P+P TEE R +K A AE ++++VRN+ Sbjct: 72 QSMVPKVEKAIMTAELGLNPASAGNVIRVPMPMLTEETRKGYIKQARQEAENTRVAVRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD +K K +ED E++IQK+TD + ID E K+ ++M Sbjct: 132 RRDANHEIKTLLKDKDITEDDQRQGEDEIQKLTDKIVGEIDKALESKEHDLMQV 185 >gi|313124038|ref|YP_004034297.1| ribosome-recycling factor [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280601|gb|ADQ61320.1| Ribosome-recycling factor [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 185 Score = 140 bits (353), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 72/175 (41%), Positives = 108/175 (61%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K M +I + ++ T+R G + S+LD V VE YG PL Q+A +T+ EPR+LV++ Sbjct: 10 KSNMNKSIEVYQSNLATVRAGVANASLLDRVMVEYYGVPTPLVQMAGITIPEPRVLVITP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +DK + +E I S+LGL P +G V+R+ +P+ T ERR + K AE++KI+VR Sbjct: 70 YDKTSLNDIEHAILASDLGLTPANDGNVIRLVIPQLTGERRQEIAKEVGKLAEEAKIAVR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 N+R++ M LKK K G+ +ED LE ++QKITD + K ID + K+KEI Sbjct: 130 NVRQEAMKALKKQEKDGEITEDEERRLEKEVQKITDESTKKIDQMADNKRKEITQ 184 >gi|170077573|ref|YP_001734211.1| ribosome recycling factor [Synechococcus sp. PCC 7002] gi|238689043|sp|B1XJ13|RRF_SYNP2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|169885242|gb|ACA98955.1| ribosome recycling factor [Synechococcus sp. PCC 7002] Length = 182 Score = 140 bits (353), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 71/178 (39%), Positives = 111/178 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++ M TI ++ TLRTGR S S+LD + VE YG+ PL +A+++ + + Sbjct: 3 LSELRENMQKTIEATQRSFNTLRTGRASASLLDRITVEYYGAETPLKSLASISTPDSSTI 62 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D+ ++ VER I S+LGL P +G +R+ +P T+ERR LVK A AE+ K Sbjct: 63 MIQPFDRGSLSDVERAISMSDLGLTPNNDGTNIRLNIPPLTKERRQELVKTAGKLAEEGK 122 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++RNIRRD +D ++K K+ SED SL++DIQK+TD ID + K+K+IM Sbjct: 123 VALRNIRRDAIDDVRKQEKNSDISEDESRSLQDDIQKVTDEFTTKIDDLLKIKEKDIM 180 >gi|325673456|ref|ZP_08153147.1| ribosome recycling factor [Rhodococcus equi ATCC 33707] gi|325555477|gb|EGD25148.1| ribosome recycling factor [Rhodococcus equi ATCC 33707] Length = 185 Score = 140 bits (352), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 66/175 (37%), Positives = 107/175 (61%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 +++M I+ K D+ ++RTGR +P M + V VE YGS P+ Q+A++ V E RM+++ Sbjct: 10 EEKMEKAITVAKDDLGSIRTGRANPGMFNRVVVEYYGSMTPITQLASINVPEARMVIIKP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 ++ + +E I S+LG+NP +G ++RI VP+ TEERR VK A + E +K+++R Sbjct: 70 YEASQLGPIENAIRNSDLGVNPSNDGSIIRISVPQLTEERRREFVKQAKSKGEDAKVAIR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 N+RR MD L + +K G+A ED V E ++ K T + ID + K+ E+M Sbjct: 130 NVRRKTMDELSRIQKDGEAGEDEVGRAEKELDKTTSRYVSQIDELVKHKEAELME 184 >gi|46447510|ref|YP_008875.1| putative ribosome recycling factor (ribosome releasing factor) [Candidatus Protochlamydia amoebophila UWE25] gi|60390257|sp|Q6M9Z9|RRF_PARUW RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|46401151|emb|CAF24600.1| putative ribosome recycling factor (ribosome releasing factor) [Candidatus Protochlamydia amoebophila UWE25] Length = 183 Score = 140 bits (352), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 70/173 (40%), Positives = 109/173 (63%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K +M I LK D+ +RTGR +P M++ V +E YGS + L VA+++ E R L+++ Sbjct: 8 KTKMITAIEHLKNDLKNIRTGRANPGMVEHVMIEVYGSPMRLKDVASISAPEARQLLITP 67 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +D + S+ +GI ++NLGL PIV+ +RI +P TEE R + K+ H EK+K+S+R Sbjct: 68 FDPQNAGSIGKGIEKANLGLMPIVDAHSVRIKIPPMTEEIRKKMAKICHEEKEKTKVSIR 127 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 NIRRD + +K + G +ED++ LE +IQ++TD K D E+K+KEI Sbjct: 128 NIRRDANELARKQKSEGIIAEDVLKKLEKNIQELTDKFCKEADEIAEKKEKEI 180 >gi|313901478|ref|ZP_07834931.1| ribosome recycling factor [Thermaerobacter subterraneus DSM 13965] gi|313468252|gb|EFR63713.1| ribosome recycling factor [Thermaerobacter subterraneus DSM 13965] Length = 184 Score = 140 bits (352), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 69/177 (38%), Positives = 112/177 (63%), Gaps = 1/177 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ ++RM + ++++ +R GR +P++L+ ++V+ YG+ +P++Q+A +T EPRML Sbjct: 6 LRETRERMEARVENFRRELAGVRAGRATPALLEKIRVDYYGTPMPIHQLATITAPEPRML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV WDK ++ +ER I +S+LG+NP +GQV+RI +P TEE R LVK AE+ + Sbjct: 66 VVQPWDKGVMGEIERAIAKSDLGVNPSSDGQVIRIVLPPLTEETRNELVKRVRKMAEEER 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 ++VRN+RR + LK G SED + + +Q++TD I ID K+KEI Sbjct: 126 VAVRNLRRQANEDLKDLEDEG-FSEDEIRRAQEKVQELTDRIIARIDELLAAKEKEI 181 >gi|224066503|ref|XP_002302112.1| predicted protein [Populus trichocarpa] gi|222843838|gb|EEE81385.1| predicted protein [Populus trichocarpa] Length = 286 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 69/174 (39%), Positives = 114/174 (65%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K RM TI ++ + ++RTGR +PSMLD ++VE YG+ V L +A ++ + L+V Sbjct: 111 KGRMEKTIDTMRANFNSVRTGRANPSMLDKIEVEYYGTPVSLKSIAQISTPDASSLLVQP 170 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +DK + ++E+ I S+LGL P +G+V+R+ +P+ T ERR L K+ AE+ K+++R Sbjct: 171 YDKSSLKAIEKAIVSSDLGLTPNNDGEVIRMSIPQLTSERRKELSKMVAKLAEEGKVALR 230 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 NIRRD + +K K K SED V L +D+QK+TD +K +++ F++K+KE++ Sbjct: 231 NIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQKLTDEYMKKLENIFKQKEKELL 284 >gi|194334661|ref|YP_002016521.1| ribosome recycling factor [Prosthecochloris aestuarii DSM 271] gi|238693307|sp|B4S4H8|RRF_PROA2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|194312479|gb|ACF46874.1| ribosome recycling factor [Prosthecochloris aestuarii DSM 271] Length = 186 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 71/172 (41%), Positives = 107/172 (62%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M +I + ++ ++RTG+ + ++LD VKV+AYG +PL QV NV V + L+V VWD Sbjct: 13 KMKKSIESFQHEIASVRTGKATTALLDRVKVDAYGQQMPLKQVGNVGVQDAHTLMVQVWD 72 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K MVA+ E+ I ++NLGLNP EGQ +R+ +P TEERR VK+ Y+E SK+++RN+ Sbjct: 73 KSMVAATEKAIRDANLGLNPAAEGQSIRVSIPPLTEERRKEYVKLTRKYSEDSKVALRNL 132 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RR+ + L K K + SED + + D + K I +K+KEIM Sbjct: 133 RREILHALDKLEKDKQISEDEKSRGKKDADDLVHKYEKRILDIVGQKEKEIM 184 >gi|310823274|ref|YP_003955632.1| ribosome-recycling factor [Stigmatella aurantiaca DW4/3-1] gi|309396346|gb|ADO73805.1| Ribosome-recycling factor [Stigmatella aurantiaca DW4/3-1] Length = 186 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 67/178 (37%), Positives = 113/178 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ +K R+ T+ LK+++ +RTGR S ++LD V+V+ YG+ PL VA+V EPR++ Sbjct: 7 LKELKGRIDKTLDDLKRELAKVRTGRASTAILDGVRVDYYGTPTPLAGVASVNAPEPRLI 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + +DK + +E+ + E+NLG+NP+ +G+++R+P P TEERR + K + E+ K Sbjct: 67 TIKPFDKSSLKEIEKALREANLGINPMNDGEMIRLPFPPLTEERRKDIAKQVKSKGEEHK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++RNIRRD + LK+ K+ +ED +QK TD+ + +DS K+KE+M Sbjct: 127 VAIRNIRRDANEALKEKLKAKTITEDDNKRTSEKVQKETDAGVAQVDSIIAAKEKEVM 184 >gi|85859433|ref|YP_461635.1| ribosome recycling factor [Syntrophus aciditrophicus SB] gi|123516615|sp|Q2LTQ4|RRF_SYNAS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|85722524|gb|ABC77467.1| ribosome recycling factor [Syntrophus aciditrophicus SB] Length = 185 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 71/177 (40%), Positives = 109/177 (61%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 +K M + L+K +RTGR S S+LD +K + YG+ PLNQVA ++V E R +++S Sbjct: 9 LKQNMEKGLQALEKSFNKVRTGRASISLLDGIKADYYGTPTPLNQVATLSVPESRQILIS 68 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 WD + ++E+ I +S+LGL P +G+V+RI +P TE RR LVKV AE+ K+ + Sbjct: 69 PWDTSALNAIEKAIQKSDLGLVPNNDGKVIRISIPPLTEARRKELVKVVRKMAEECKVKL 128 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RN RRD + K +K+ SED + ++ +QK+TDS I+ + +K+KEIM Sbjct: 129 RNARRDANEEFKSMKKNNDISEDQMHDYQDQVQKMTDSYIEKSEDILVQKEKEIMEI 185 >gi|160893344|ref|ZP_02074131.1| hypothetical protein CLOL250_00893 [Clostridium sp. L2-50] gi|156865036|gb|EDO58467.1| hypothetical protein CLOL250_00893 [Clostridium sp. L2-50] Length = 181 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 70/178 (39%), Positives = 113/178 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M T+ L+ + T+R GR +P++L+ +KVE YG P+ Q+AN+TV E R L Sbjct: 2 LTQYEEKMTKTVENLEGEYATIRAGRANPNILNKIKVEYYGVPTPMQQLANITVPEARTL 61 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ W+ +V ++E+ I S+LGL P +G+ + + PE TEERR +VK E +K Sbjct: 62 MIAPWEPSLVKAIEKAILNSDLGLTPNNDGKNIILNFPELTEERRKEIVKDIKKKGENAK 121 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++RN+RRD D +KK K+G SED + + E+ IQK+TD + ID E+K EI+ Sbjct: 122 VAIRNVRRDANDAIKKMEKAGDISEDELKTNEDKIQKMTDKYVGLIDKAIEKKSTEIL 179 >gi|148285160|ref|YP_001249250.1| ribosome recycling factor [Orientia tsutsugamushi str. Boryong] gi|166230811|sp|A5CFN3|RRF_ORITB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|146740599|emb|CAM81253.1| ribosome recycling factor [Orientia tsutsugamushi str. Boryong] Length = 187 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 71/175 (40%), Positives = 114/175 (65%), Gaps = 1/175 (0%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M + L D+ LR G+ S LD V+VEAY S VP+ QVA ++V + + ++V VWD Sbjct: 13 KMNGALQVLDADLKGLRVGQASAYFLDPVQVEAYNSRVPILQVATISVSDTKTILVQVWD 72 Query: 73 KEMVASVERGIHESNLGLNPIVE-GQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 K +V +V++ I E+NLG++ I + Q++R+ +P +EERR LVK+AH Y EKSKI VRN Sbjct: 73 KSLVKAVKKAIMEANLGVSIISDDNQIIRLQLPIPSEERRKELVKIAHKYQEKSKIIVRN 132 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 IRRDG++ +K+ ++ + S+D +IQ++TD ID + K+++I++ Sbjct: 133 IRRDGIELIKQMEQNTECSKDEAHIYSKEIQELTDKYCDKIDKIIKLKEQDIINL 187 >gi|297566374|ref|YP_003685346.1| ribosome recycling factor [Meiothermus silvanus DSM 9946] gi|296850823|gb|ADH63838.1| ribosome recycling factor [Meiothermus silvanus DSM 9946] Length = 185 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 71/174 (40%), Positives = 108/174 (62%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 ++ M + L+ + LRTGR +P++L ++V+ YGS +P+ Q+ +T + R LV+ Sbjct: 10 RNHMQKALDALEHHLSGLRTGRANPAILKSIRVDYYGSLMPIEQLGTITAPDARTLVIQS 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 WD + S+E+ I +S+LGLNP +G L I +P TEERR LVK YAE+++++VR Sbjct: 70 WDAGALKSIEKAIRDSDLGLNPNNKGDSLFISIPPLTEERRRELVKAVKHYAEEARVAVR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 N RR+ +D KK K SED + E +IQKITD I +DS E+K+ EI+ Sbjct: 130 NARREAVDKAKKLGKEQHLSEDDIKRAEAEIQKITDEFIGKVDSALEKKEHEIL 183 >gi|119357866|ref|YP_912510.1| ribosome recycling factor [Chlorobium phaeobacteroides DSM 266] gi|166230777|sp|A1BI59|RRF_CHLPD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|119355215|gb|ABL66086.1| ribosome recycling factor [Chlorobium phaeobacteroides DSM 266] Length = 186 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 71/177 (40%), Positives = 109/177 (61%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q + +M TI + ++ ++RTG+ + ++LD VKVEAYG +PL QV NV V++ L+ Sbjct: 8 QRTEPKMKKTIEAFQHEIASIRTGKATTALLDRVKVEAYGQQMPLKQVGNVGVMDVHTLM 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V VWDK MV++ ER I ++NLGLNP +GQ +R+ +P TEERR VK+ + E SK+ Sbjct: 68 VQVWDKSMVSATERAIRDANLGLNPAADGQSIRVSIPPLTEERRKEFVKLTKKFGEDSKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 S+RN+RRD + ++K K SED + + ++ K ++ K+KEIM Sbjct: 128 SLRNLRRDMIHEIEKLEKEKAISEDDKNKGKKEADEMLHKFEKQLNDLIVLKEKEIM 184 >gi|325983649|ref|YP_004296051.1| ribosome recycling factor [Nitrosomonas sp. AL212] gi|325533168|gb|ADZ27889.1| ribosome recycling factor [Nitrosomonas sp. AL212] Length = 185 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 72/172 (41%), Positives = 108/172 (62%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M ++ LK D+ +R+GR LD + V+ YG+ PL+QVAN+ +++ R + V W+ Sbjct: 12 KMQKSLEALKVDLSKVRSGRAHAGFLDHITVDYYGTQTPLSQVANINLIDARTIGVIPWE 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K+M +E+ I ES+LGLNP+ G+ +R+P+P TEERR L+KV AE +I++RNI Sbjct: 72 KKMGNVIEKAIRESDLGLNPMPVGETIRVPMPALTEERRRDLIKVVKQEAENVRIAMRNI 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD HLK KS + SED +++IQK+TD I ID K+ E+M Sbjct: 132 RRDANTHLKDLLKSKEISEDDERRGQDEIQKLTDRYITEIDKILHIKETELM 183 >gi|189184500|ref|YP_001938285.1| ribosome recycling factor [Orientia tsutsugamushi str. Ikeda] gi|238692022|sp|B3CUK4|RRF_ORITI RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|189181271|dbj|BAG41051.1| ribosome recycling factor [Orientia tsutsugamushi str. Ikeda] Length = 187 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 71/175 (40%), Positives = 114/175 (65%), Gaps = 1/175 (0%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M + L D+ LR G+ S LD V+VEAY S VP+ QVA ++V + + ++V VWD Sbjct: 13 KMNGALQVLDADLKGLRVGQASAYFLDPVQVEAYNSKVPILQVATISVSDTKTILVQVWD 72 Query: 73 KEMVASVERGIHESNLGLNPIVE-GQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 K +V +V++ I E+NLG++ I + Q++R+ +P +EERR LVK+AH Y EKSKI VRN Sbjct: 73 KSLVKAVKKAIMEANLGVSIISDDNQIIRLQLPIPSEERRKELVKIAHKYQEKSKIIVRN 132 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 IRRDG++ +K+ ++ + S+D +IQ++TD ID + K+++I++ Sbjct: 133 IRRDGIELIKQMEQNTECSKDEAHIYSKEIQELTDKYCDKIDKIIKLKEQDIINL 187 >gi|29347659|ref|NP_811162.1| ribosome recycling factor [Bacteroides thetaiotaomicron VPI-5482] gi|253572118|ref|ZP_04849522.1| ribosome-recycling factor [Bacteroides sp. 1_1_6] gi|34924952|sp|Q8A5J0|RRF_BACTN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|29339560|gb|AAO77356.1| ribosome recycling factor (ribosome releasing factor) [Bacteroides thetaiotaomicron VPI-5482] gi|251838298|gb|EES66385.1| ribosome-recycling factor [Bacteroides sp. 1_1_6] Length = 186 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 73/178 (41%), Positives = 112/178 (62%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L N +++M + +L++ + +R G+ S +LD ++V++YGS VP++ VA ++ + R + Sbjct: 8 LDNAQEKMDMAVMYLEEALAHIRAGKASTRLLDGIRVDSYGSMVPISNVAALSTPDARSI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK M ++E+ I +S+LG+ P G+V+RI +P TEERR L K A E +K Sbjct: 68 TIKPWDKSMFRAIEKAIIDSDLGIMPENNGEVIRIGIPPLTEERRRQLAKQCKAEGETAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +SVRN RRDG+D LKK+ K G A ED + E +QKI D IK I+ +K KEIM Sbjct: 128 VSVRNARRDGIDALKKAVKDGLA-EDEQKNAEAKLQKIHDKYIKQIEDMLADKDKEIM 184 >gi|300854491|ref|YP_003779475.1| putative ribosome recycling factor [Clostridium ljungdahlii DSM 13528] gi|300434606|gb|ADK14373.1| predicted ribosome recycling factor [Clostridium ljungdahlii DSM 13528] Length = 185 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 64/154 (41%), Positives = 102/154 (66%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +MG TI LK ++ +++ GR S ++LD ++ E YGS P+NQ+ N+++ EPR+L + WD Sbjct: 12 KMGKTIDALKSELASMKAGRASAALLDRIEAEYYGSMTPINQLGNISIPEPRVLCIQPWD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K + ++E+ I +S+LG+NP +G+V+R+ +PE TEE R +VK E SK++VR I Sbjct: 72 KTALKAIEKAILKSDLGINPSNDGEVIRLVIPELTEETRKDIVKNVKKAGEDSKVAVRAI 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITD 166 RR+ D++K +K SED + E D+QK TD Sbjct: 132 RRECNDNIKALKKENDISEDEIKKAEADVQKKTD 165 >gi|89889410|ref|ZP_01200921.1| ribosome recycling factor [Flavobacteria bacterium BBFL7] gi|89517683|gb|EAS20339.1| ribosome recycling factor [Flavobacteria bacterium BBFL7] Length = 184 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 77/186 (41%), Positives = 114/186 (61%), Gaps = 6/186 (3%) Query: 1 MNQVIDL--QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 MN+ ++L K+ M I L+K ++ +R G+ SP+ML V V+ YGS PL QVANV Sbjct: 1 MNEELELVIDACKEGMDSAIVHLEKQLLNIRAGKASPAMLGSVFVDYYGSQTPLGQVANV 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 + R + V+ W+K M+ +E+GI +NLGLNP+ G+ + I VP TEERR+ L K + Sbjct: 61 AAPDARTITVTPWEKGMITEIEKGIMYANLGLNPMNNGESVIINVPALTEERRIDLAKQS 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 + E++KI VRN R+ M+ LKK SED++ S E ++Q++T+S I ID Sbjct: 121 KSEGEEAKIGVRNDRKTAMNDLKKL----GLSEDLLKSSEEEVQELTNSYIAKIDKIVAV 176 Query: 179 KKKEIM 184 K+ EIM Sbjct: 177 KEAEIM 182 >gi|304384860|ref|ZP_07367206.1| ribosome recycling factor [Pediococcus acidilactici DSM 20284] gi|304329054|gb|EFL96274.1| ribosome recycling factor [Pediococcus acidilactici DSM 20284] Length = 186 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 64/178 (35%), Positives = 116/178 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ +++M L++D+ ++R GR + S+LD V V+ YG+ PLNQ+A++++ EPR+L Sbjct: 7 LKTAEEKMHKAHQALERDLGSIRAGRANASLLDRVTVDYYGAPTPLNQMASISIPEPRVL 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK ++ +E+ + ++LG+NP +G +R+ +P+ TEE R L K A EK K Sbjct: 67 LITPYDKSVLNDIEQALLVADLGINPANDGSAIRLVIPQLTEETRKELAKDVKAEGEKGK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++RN+RR+ M+ LKK+ K+G ++D LE Q ITD I+ ++ K+KE++ Sbjct: 127 VAIRNVRREAMEALKKAHKNGDYNDDEFHDLEKQAQDITDKAIRKVEEIVANKEKEVL 184 >gi|317056783|ref|YP_004105250.1| ribosome recycling factor [Ruminococcus albus 7] gi|315449052|gb|ADU22616.1| ribosome recycling factor [Ruminococcus albus 7] Length = 184 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 73/176 (41%), Positives = 115/176 (65%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K++M +++ + D +R GR +P++LD VKV+ YGS P+NQ+A V+V E R+LV++ Sbjct: 9 KEKMEKSVNVMLSDFAAIRAGRANPAVLDKVKVDYYGSPTPVNQMAAVSVAEARILVITP 68 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 WDK + S+E+ I S++G+NP +GQ +R+ P+ TE+RR +VK E +K++VR Sbjct: 69 WDKSTLKSIEKAIQASDIGINPQNDGQTIRLIFPQLTEDRRKEIVKDVKKGGEDTKVAVR 128 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +IRRD ++ +K +K+ + +ED E IQKITD IK ID EK+KEI+ Sbjct: 129 SIRRDAIEKIKAKKKNNEITEDEQKDGEEAIQKITDKFIKEIDGHVAEKEKEILSI 184 >gi|253996534|ref|YP_003048598.1| ribosome recycling factor [Methylotenera mobilis JLW8] gi|253983213|gb|ACT48071.1| ribosome recycling factor [Methylotenera mobilis JLW8] Length = 185 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 70/172 (40%), Positives = 106/172 (61%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M ++ LK D+ +RTGR +LD V VE YGS V +NQVANV + + R + V ++ Sbjct: 12 KMQKSLEALKNDLAKVRTGRAHVGLLDHVMVEYYGSMVAVNQVANVNLGDARTINVQPYE 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K M+A VE+ I +S+LGLNP G ++R+P+P TEERR L K+ E +K+++RN+ Sbjct: 72 KNMIAKVEKAIRDSDLGLNPATNGDLIRVPMPMLTEERRRDLTKIVRTEGEGAKVAIRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD D LKK K SED ++++QK TD + +D + K+ ++M Sbjct: 132 RRDANDALKKLVKDKAISEDDERRAQDEVQKSTDKAVAEVDKMLQVKEADLM 183 >gi|298383473|ref|ZP_06993034.1| ribosome recycling factor [Bacteroides sp. 1_1_14] gi|298263077|gb|EFI05940.1| ribosome recycling factor [Bacteroides sp. 1_1_14] Length = 186 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 74/178 (41%), Positives = 111/178 (62%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L N +++M I +L++ + +R G+ S +LD ++V++YGS VP++ VA VT + R + Sbjct: 8 LDNAQEKMDMAIMYLEEALAHIRAGKASTRLLDGIRVDSYGSMVPISNVAAVTTPDARSI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK M +E+ I +S+LG+ P G+++RI +P TEERR L K + E +K Sbjct: 68 TIKPWDKSMFRVIEKAIIDSDLGIMPENNGEIIRIGIPPLTEERRKQLAKQCKSEGETAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +SVRN RRDG+D LKK+ K G A ED + E +QKI D IK I+ +K KEIM Sbjct: 128 VSVRNARRDGIDALKKAVKDGLA-EDEQKNAEAKLQKIHDKYIKQIEDMLADKDKEIM 184 >gi|325685953|gb|EGD28016.1| ribosome recycling factor [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 185 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 71/175 (40%), Positives = 108/175 (61%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K M +I + ++ T+R G + S+LD V VE YG PL Q+A +T+ EPR+LV++ Sbjct: 10 KSNMNKSIEVYQSNLATVRAGVANASLLDRVMVEYYGVPTPLVQMAGITIPEPRVLVITP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +DK + +E I S+LGL P +G V+R+ +P+ T ERR + K AE++KI+VR Sbjct: 70 YDKTSLNDIEHAILASDLGLTPANDGNVIRLVIPQLTGERRQEIAKEVGKLAEEAKIAVR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 N+R++ M LKK K G+ +ED LE ++QK+TD + K ID + K+KEI Sbjct: 130 NVRQEAMKALKKQEKDGEITEDEERRLEKEVQKVTDESTKKIDQMADNKRKEITQ 184 >gi|78186236|ref|YP_374279.1| ribosome recycling factor [Chlorobium luteolum DSM 273] gi|123583477|sp|Q3B5Z5|RRF_PELLD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|78166138|gb|ABB23236.1| ribosome recycling factor [Chlorobium luteolum DSM 273] Length = 186 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 72/177 (40%), Positives = 106/177 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q + +M I + ++ ++RTG+ + ++LD VKVEAYG +PL QV NV V + L+ Sbjct: 8 QKSEQKMKKAIEAFQHEIASIRTGKATTALLDRVKVEAYGQTMPLRQVGNVGVSDIHTLL 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V VWDK MVA+ E+ I ++NLGLNP EGQ +R+ +P TEERR VK+ + E SK+ Sbjct: 68 VQVWDKSMVAATEKAIRDANLGLNPAAEGQSIRVSIPPLTEERRKEFVKLTRKFGEDSKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 S+RN RRD + ++K K SED + D + K ++ +K+KEIM Sbjct: 128 SLRNHRRDMIQEIEKLEKEKAISEDDRNRGKKDADDLLHRFEKQVNELIAQKEKEIM 184 >gi|224499896|ref|ZP_03668245.1| ribosome recycling factor [Listeria monocytogenes Finland 1988] Length = 172 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 69/164 (42%), Positives = 110/164 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K++M L + + T+R GR + S+LD + V+ YG+ P+NQ+A+++V E RML Sbjct: 6 LSKSKEKMEKAEQALTRQLGTIRAGRANASLLDRLSVDYYGAATPVNQMASISVPEARML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK ++ +E+ I +S+LGL P +G VLR+ +P+ TEERR LVK AE++K Sbjct: 66 LITPYDKTILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIK 170 ++VRNIRR+ + LKK K+G +ED + S D+QK+TD +IK Sbjct: 126 VAVRNIRREANEELKKLEKNGDITEDDLRSYGEDVQKLTDESIK 169 >gi|330718876|ref|ZP_08313476.1| ribosome recycling factor [Leuconostoc fallax KCTC 3537] Length = 181 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 72/180 (40%), Positives = 114/180 (63%), Gaps = 3/180 (1%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D + K RM L++++ +R GR +P++L+ V+VE YG+ PLNQVA++ V E R Sbjct: 3 FDFSDAKARMQKAQDALQRELAGIRAGRANPALLNRVEVEYYGAMTPLNQVASIQVPEAR 62 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 +L+V+ +DK + ++ I+ S+LGLNP +G +R+ +P+ TEERR L K A EK Sbjct: 63 ILLVTPFDKTALDAIVHAINVSDLGLNPASDGNAIRLVIPQLTEERRKELSKDVKAEGEK 122 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +K+++RNIRRD MD +K K +ED + E + QK+TD +K ID EK++E++ Sbjct: 123 AKVAIRNIRRDVMDSIK---KDDALNEDDMHKAETEAQKLTDENVKAIDKIAAEKEEELL 179 >gi|169633330|ref|YP_001707066.1| ribosome recycling factor [Acinetobacter baumannii SDF] gi|238688138|sp|B0VMU5|RRF_ACIBS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|169152122|emb|CAP01021.1| ribosome releasing factor [Acinetobacter baumannii] Length = 184 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 75/173 (43%), Positives = 109/173 (63%), Gaps = 1/173 (0%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM T+ L++ +RTGR PS+L+ V V YGS VPLNQVANV V + R L+V ++ Sbjct: 12 RMLKTLESLEQGFAKVRTGRAHPSILNGVMVPYYGSDVPLNQVANVGVEDSRTLIVQPFE 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + MVA++++ I ES+LGLNPI +R+P+P TEE R + K+A + AE +K+++RNI Sbjct: 72 RTMVAAIDKAIRESDLGLNPIT-ADSIRVPLPALTEETRRDMQKIARSEAENAKVAIRNI 130 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 RRD + +K K + SED +DIQKITD + +D K+ E+M Sbjct: 131 RRDVLGDIKALLKEKEISEDDERRAGDDIQKITDKYVAEVDKRLAAKEAELMR 183 >gi|326794438|ref|YP_004312258.1| ribosome-recycling factor [Marinomonas mediterranea MMB-1] gi|326545202|gb|ADZ90422.1| Ribosome-recycling factor [Marinomonas mediterranea MMB-1] Length = 185 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 70/178 (39%), Positives = 110/178 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ ++RM ++ ++ +RTGR PS+LD +KV YGS PL+QVAN+TV + R L Sbjct: 6 LKDAEERMSKAVNSVEVSFNKIRTGRAHPSLLDPIKVNYYGSPTPLSQVANITVEDARTL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +S W+ +V +E+ I +S+LGLNP G ++RIP+P TEE R K A + AE + Sbjct: 66 GISPWEGNLVPEIEKAIMKSDLGLNPSTTGNLIRIPMPALTEETRGNYAKQARSEAENGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 I++RNIRRD +LK K + SED ++ +QK+TD + ++ K+K++M Sbjct: 126 IAIRNIRRDANGNLKDLTKEKEISEDEERRGQDQVQKLTDKYVAKVEERLAAKEKDLM 183 >gi|291277175|ref|YP_003516947.1| ribosome recycling factor [Helicobacter mustelae 12198] gi|290964369|emb|CBG40219.1| ribosome recycling factor [Helicobacter mustelae 12198] Length = 185 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 71/184 (38%), Positives = 113/184 (61%), Gaps = 1/184 (0%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M Q I Q+ K M +I LK+D +TLR+G+VS ++LD VKV+ YG+ PLNQV +V Sbjct: 1 MTQEI-FQHTKTHMDKSIDALKRDFLTLRSGKVSVNILDNVKVDYYGTPTPLNQVGSVIA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + ++++ W+K ++ +ER I E+N+G+NP +G+ +++ P T+E+R + K A Sbjct: 60 QDATTILITPWEKNLLKDIERAIQEANIGVNPNNDGETIKLFFPPMTQEQRKEIAKDTKA 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 EK+KI++RNIR+D + +KK K +ED + IQK TD K ID + K+ Sbjct: 120 MGEKAKIAIRNIRQDSNNQIKKLEKDKSITEDESKKAHDTIQKYTDEYAKKIDEMVKHKE 179 Query: 181 KEIM 184 E+M Sbjct: 180 DEVM 183 >gi|15610019|ref|NP_217398.1| ribosome recycling factor [Mycobacterium tuberculosis H37Rv] gi|15842423|ref|NP_337460.1| ribosome recycling factor [Mycobacterium tuberculosis CDC1551] gi|31794058|ref|NP_856551.1| ribosome recycling factor [Mycobacterium bovis AF2122/97] gi|148662726|ref|YP_001284249.1| ribosome recycling factor [Mycobacterium tuberculosis H37Ra] gi|148824071|ref|YP_001288825.1| ribosome recycling factor [Mycobacterium tuberculosis F11] gi|167969509|ref|ZP_02551786.1| ribosome recycling factor [Mycobacterium tuberculosis H37Ra] gi|215404856|ref|ZP_03417037.1| ribosome recycling factor [Mycobacterium tuberculosis 02_1987] gi|215412723|ref|ZP_03421435.1| ribosome recycling factor [Mycobacterium tuberculosis 94_M4241A] gi|215428323|ref|ZP_03426242.1| ribosome recycling factor [Mycobacterium tuberculosis T92] gi|215431829|ref|ZP_03429748.1| ribosome recycling factor [Mycobacterium tuberculosis EAS054] gi|215447144|ref|ZP_03433896.1| ribosome recycling factor [Mycobacterium tuberculosis T85] gi|218754634|ref|ZP_03533430.1| ribosome recycling factor [Mycobacterium tuberculosis GM 1503] gi|219558903|ref|ZP_03537979.1| ribosome recycling factor [Mycobacterium tuberculosis T17] gi|253798030|ref|YP_003031031.1| ribosome recycling factor frr [Mycobacterium tuberculosis KZN 1435] gi|254232977|ref|ZP_04926304.1| ribosome recycling factor frr (ribosome releasing factor) [Mycobacterium tuberculosis C] gi|254365523|ref|ZP_04981568.1| ribosome recycling factor frr (ribosome releasing factor) [Mycobacterium tuberculosis str. Haarlem] gi|254551951|ref|ZP_05142398.1| ribosome recycling factor [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187900|ref|ZP_05765374.1| ribosome recycling factor [Mycobacterium tuberculosis CPHL_A] gi|260202016|ref|ZP_05769507.1| ribosome recycling factor [Mycobacterium tuberculosis T46] gi|260206197|ref|ZP_05773688.1| ribosome recycling factor [Mycobacterium tuberculosis K85] gi|289444437|ref|ZP_06434181.1| ribosome recycling factor [Mycobacterium tuberculosis T46] gi|289448548|ref|ZP_06438292.1| ribosome recycling factor frr [Mycobacterium tuberculosis CPHL_A] gi|289553329|ref|ZP_06442539.1| ribosome recycling factor frr [Mycobacterium tuberculosis KZN 605] gi|289571072|ref|ZP_06451299.1| ribosome recycling factor frr [Mycobacterium tuberculosis T17] gi|289575587|ref|ZP_06455814.1| ribosome recycling factor frr [Mycobacterium tuberculosis K85] gi|289746681|ref|ZP_06506059.1| ribosome recycling factor frr [Mycobacterium tuberculosis 02_1987] gi|289751547|ref|ZP_06510925.1| ribosome recycling factor frr [Mycobacterium tuberculosis T92] gi|289754994|ref|ZP_06514372.1| ribosome recycling factor frr [Mycobacterium tuberculosis EAS054] gi|289759003|ref|ZP_06518381.1| ribosome releasing factor [Mycobacterium tuberculosis T85] gi|289763059|ref|ZP_06522437.1| ribosome recycling factor frr (ribosome releasing factor) [Mycobacterium tuberculosis GM 1503] gi|294994025|ref|ZP_06799716.1| ribosome recycling factor [Mycobacterium tuberculosis 210] gi|297635498|ref|ZP_06953278.1| ribosome recycling factor [Mycobacterium tuberculosis KZN 4207] gi|297732497|ref|ZP_06961615.1| ribosome recycling factor [Mycobacterium tuberculosis KZN R506] gi|298526351|ref|ZP_07013760.1| ribosome recycling factor frr (ribosome releasing factor) [Mycobacterium tuberculosis 94_M4241A] gi|306777168|ref|ZP_07415505.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu001] gi|306781075|ref|ZP_07419412.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu002] gi|306785714|ref|ZP_07424036.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu003] gi|306789754|ref|ZP_07428076.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu004] gi|306794568|ref|ZP_07432870.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu005] gi|306798809|ref|ZP_07437111.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu006] gi|306804656|ref|ZP_07441324.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu008] gi|306808849|ref|ZP_07445517.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu007] gi|306968949|ref|ZP_07481610.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu009] gi|306973285|ref|ZP_07485946.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu010] gi|307080993|ref|ZP_07490163.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu011] gi|307085590|ref|ZP_07494703.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu012] gi|313659830|ref|ZP_07816710.1| ribosome recycling factor [Mycobacterium tuberculosis KZN V2475] gi|54039295|sp|P66735|RRF_MYCBO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|54042003|sp|P66734|RRF_MYCTU RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166230804|sp|A5U6N7|RRF_MYCTA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|61680226|pdb|1WQF|A Chain A, Crystal Structure Of Ribosome Recycling Factor From Mycobacterium Tuberculosis gi|61680227|pdb|1WQG|A Chain A, Crystal Structure Of Ribosome Recycling Factor From Mycobacterium Tuberculosis gi|61680228|pdb|1WQH|A Chain A, Crystal Structure Of Ribosome Recycling Factor From Mycobacterium Tuberculosis gi|1403402|emb|CAA98358.1| RIBOSOME RECYCLING FACTOR FRR (RIBOSOME RELEASING FACTOR) (RRF) [Mycobacterium tuberculosis H37Rv] gi|13882725|gb|AAK47274.1| ribosome recycling factor [Mycobacterium tuberculosis CDC1551] gi|31619653|emb|CAD96593.1| RIBOSOME RECYCLING FACTOR FRR (RIBOSOME RELEASING FACTOR) (RRF) [Mycobacterium bovis AF2122/97] gi|124602036|gb|EAY61046.1| ribosome recycling factor frr (ribosome releasing factor) [Mycobacterium tuberculosis C] gi|134151036|gb|EBA43081.1| ribosome recycling factor frr (ribosome releasing factor) [Mycobacterium tuberculosis str. Haarlem] gi|148506878|gb|ABQ74687.1| ribosome releasing factor [Mycobacterium tuberculosis H37Ra] gi|148722598|gb|ABR07223.1| ribosome recycling factor frr (ribosome releasing factor) [Mycobacterium tuberculosis F11] gi|253319533|gb|ACT24136.1| ribosome recycling factor frr [Mycobacterium tuberculosis KZN 1435] gi|289417356|gb|EFD14596.1| ribosome recycling factor [Mycobacterium tuberculosis T46] gi|289421506|gb|EFD18707.1| ribosome recycling factor frr [Mycobacterium tuberculosis CPHL_A] gi|289437961|gb|EFD20454.1| ribosome recycling factor frr [Mycobacterium tuberculosis KZN 605] gi|289540018|gb|EFD44596.1| ribosome recycling factor frr [Mycobacterium tuberculosis K85] gi|289544826|gb|EFD48474.1| ribosome recycling factor frr [Mycobacterium tuberculosis T17] gi|289687209|gb|EFD54697.1| ribosome recycling factor frr [Mycobacterium tuberculosis 02_1987] gi|289692134|gb|EFD59563.1| ribosome recycling factor frr [Mycobacterium tuberculosis T92] gi|289695581|gb|EFD63010.1| ribosome recycling factor frr [Mycobacterium tuberculosis EAS054] gi|289710565|gb|EFD74581.1| ribosome recycling factor frr (ribosome releasing factor) [Mycobacterium tuberculosis GM 1503] gi|289714567|gb|EFD78579.1| ribosome releasing factor [Mycobacterium tuberculosis T85] gi|298496145|gb|EFI31439.1| ribosome recycling factor frr (ribosome releasing factor) [Mycobacterium tuberculosis 94_M4241A] gi|308214453|gb|EFO73852.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu001] gi|308326125|gb|EFP14976.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu002] gi|308329628|gb|EFP18479.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu003] gi|308333767|gb|EFP22618.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu004] gi|308337161|gb|EFP26012.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu005] gi|308340971|gb|EFP29822.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu006] gi|308344804|gb|EFP33655.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu007] gi|308348752|gb|EFP37603.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu008] gi|308353453|gb|EFP42304.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu009] gi|308357318|gb|EFP46169.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu010] gi|308361203|gb|EFP50054.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu011] gi|308364898|gb|EFP53749.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu012] gi|323718492|gb|EGB27663.1| ribosome recycling factor frr [Mycobacterium tuberculosis CDC1551A] gi|326904497|gb|EGE51430.1| ribosome recycling factor frr [Mycobacterium tuberculosis W-148] gi|328457804|gb|AEB03227.1| ribosome recycling factor frr [Mycobacterium tuberculosis KZN 4207] Length = 185 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 65/178 (36%), Positives = 110/178 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++M ++ + D+ T+RTGR +P M + ++ YG+ P+ Q+A++ V E R++ Sbjct: 6 LFDAEEKMEKAVAVARDDLSTIRTGRANPGMFSRITIDYYGAATPITQLASINVPEARLV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ ++ + ++E I S+LG+NP +G ++R+ VP+ TEERR LVK A E++K Sbjct: 66 VIKPYEANQLRAIETAIRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +SVRNIRR M+ L + RK G+A ED V E D+ K T + ID + K+ E++ Sbjct: 126 VSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDKTTHQYVTQIDELVKHKEGELL 183 >gi|169795682|ref|YP_001713475.1| ribosome recycling factor [Acinetobacter baumannii AYE] gi|213158373|ref|YP_002319671.1| ribosome recycling factor [Acinetobacter baumannii AB0057] gi|215483169|ref|YP_002325376.1| ribosome recycling factor [Acinetobacter baumannii AB307-0294] gi|239501622|ref|ZP_04660932.1| ribosome recycling factor [Acinetobacter baumannii AB900] gi|260554744|ref|ZP_05826965.1| ribosome recycling factor [Acinetobacter baumannii ATCC 19606] gi|301346282|ref|ZP_07227023.1| ribosome recycling factor [Acinetobacter baumannii AB056] gi|301512091|ref|ZP_07237328.1| ribosome recycling factor [Acinetobacter baumannii AB058] gi|301595691|ref|ZP_07240699.1| ribosome recycling factor [Acinetobacter baumannii AB059] gi|332852500|ref|ZP_08434239.1| ribosome recycling factor [Acinetobacter baumannii 6013150] gi|332871296|ref|ZP_08439845.1| ribosome recycling factor [Acinetobacter baumannii 6013113] gi|332873908|ref|ZP_08441848.1| ribosome recycling factor [Acinetobacter baumannii 6014059] gi|226703248|sp|B7H1U3|RRF_ACIB3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226703249|sp|B7I9V2|RRF_ACIB5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238685521|sp|A3M657|RRF_ACIBT RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238688040|sp|B0V6F0|RRF_ACIBY RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|169148609|emb|CAM86475.1| ribosome releasing factor [Acinetobacter baumannii AYE] gi|193077567|gb|ABO12401.2| ribosome releasing factor [Acinetobacter baumannii ATCC 17978] gi|213057533|gb|ACJ42435.1| ribosome recycling factor [Acinetobacter baumannii AB0057] gi|213987944|gb|ACJ58243.1| ribosome recycling factor [Acinetobacter baumannii AB307-0294] gi|260411286|gb|EEX04583.1| ribosome recycling factor [Acinetobacter baumannii ATCC 19606] gi|322508741|gb|ADX04195.1| ribosome releasing factor [Acinetobacter baumannii 1656-2] gi|323518346|gb|ADX92727.1| ribosome recycling factor [Acinetobacter baumannii TCDC-AB0715] gi|332729202|gb|EGJ60545.1| ribosome recycling factor [Acinetobacter baumannii 6013150] gi|332731580|gb|EGJ62866.1| ribosome recycling factor [Acinetobacter baumannii 6013113] gi|332737894|gb|EGJ68781.1| ribosome recycling factor [Acinetobacter baumannii 6014059] Length = 184 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 75/172 (43%), Positives = 109/172 (63%), Gaps = 1/172 (0%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM T+ L++ +RTGR PS+L+ V V YGS VPLNQVANV V + R L+V ++ Sbjct: 12 RMLKTLESLEQGFAKVRTGRAHPSILNGVMVPYYGSDVPLNQVANVGVEDSRTLIVQPFE 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + MVA++++ I ES+LGLNPI +R+P+P TEE R + K+A + AE +K+++RNI Sbjct: 72 RTMVAAIDKAIRESDLGLNPIT-ADSIRVPLPALTEETRRDMQKIARSEAENAKVAIRNI 130 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD + +K K + SED +DIQKITD + +D K+ E+M Sbjct: 131 RRDVLGDIKALLKEKEISEDDERRAGDDIQKITDKYVAEVDKRLAAKEAELM 182 >gi|326563741|gb|EGE13992.1| ribosome recycling factor [Moraxella catarrhalis 46P47B1] Length = 184 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 76/173 (43%), Positives = 109/173 (63%), Gaps = 1/173 (0%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM +I L+ LRTGR P +L V V YGS PLNQVA++ V + R L+V ++ Sbjct: 12 RMQKSIEALEAAFSKLRTGRAHPGILSGVMVSYYGSDTPLNQVASINVEDSRTLLVQPFE 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + MV +V++ I E++LGLNP+ V+R+P+P TEE R + K+A AE+++ISVRNI Sbjct: 72 RSMVQAVDKAIREADLGLNPMT-ADVIRVPMPALTEETRRDMQKIARNDAEQTRISVRNI 130 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 RRD + +K K + SED + +DIQK+TD I IDS E+K+ E+M Sbjct: 131 RRDMLSDIKDLLKDKEISEDDERRVADDIQKLTDKFIATIDSRLEKKESELME 183 >gi|83647914|ref|YP_436349.1| ribosome recycling factor [Hahella chejuensis KCTC 2396] gi|123531340|sp|Q2SBQ0|RRF_HAHCH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|83635957|gb|ABC31924.1| ribosome recycling factor [Hahella chejuensis KCTC 2396] Length = 185 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 71/172 (41%), Positives = 105/172 (61%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M ++ L +RTGR +P++L+ V V YG+ PL Q+ANV V + R L V+ W+ Sbjct: 12 KMKKSMEALGHAFAKIRTGRANPAILESVMVSYYGTDTPLTQIANVVVEDARTLSVTPWE 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K MV +E+ I +S+LGLNP G V+R+P+P TEE R LVK A AE +++++RN+ Sbjct: 72 KNMVPQIEKAILKSDLGLNPSTAGTVIRVPMPALTEETRKELVKTARGEAENTRVAIRNL 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD +K K + SED +DIQK+TD I +D EK+K++M Sbjct: 132 RRDANADIKTLLKDKEISEDEEKRGLDDIQKLTDKYIAEVDRVLAEKEKDLM 183 >gi|219127660|ref|XP_002184049.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217404280|gb|EEC44227.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 225 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 68/174 (39%), Positives = 110/174 (63%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 DRM ++ ++ ++ ++RTGR S +LD VKV+ YG PLNQ+A ++V + L + + Sbjct: 51 DRMAKSVDSVRLNLQSVRTGRASAQILDRVKVDYYGVETPLNQMATISVPSAQQLSIDPY 110 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 DK + ++E I ES+LGL +G ++RI +P TE+RR ++K+ + E+ K++VRN Sbjct: 111 DKTSLNNIETAIVESDLGLTTNNDGSIIRINIPSMTEDRRKEMLKLCKSIGEEGKVAVRN 170 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 IRRDG+D +KK KS ED + ++ +QK+TD +K ID K+KE+M Sbjct: 171 IRRDGLDTIKKMEKSSDIGEDEMKDGQDTMQKLTDKNVKEIDEVVGAKEKEVMK 224 >gi|167746791|ref|ZP_02418918.1| hypothetical protein ANACAC_01503 [Anaerostipes caccae DSM 14662] gi|317471594|ref|ZP_07930938.1| ribosome recycling protein [Anaerostipes sp. 3_2_56FAA] gi|167653751|gb|EDR97880.1| hypothetical protein ANACAC_01503 [Anaerostipes caccae DSM 14662] gi|316900909|gb|EFV22879.1| ribosome recycling protein [Anaerostipes sp. 3_2_56FAA] Length = 181 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 69/178 (38%), Positives = 107/178 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ +D+M + + + M +R GR +P +LD V V+ YG P+ QV NV+V E R + Sbjct: 2 LKKFEDKMQKSYENMTSEFMAIRAGRANPHVLDKVTVDYYGVPTPIQQVGNVSVPEARTI 61 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ W+ ++ +E+ I S++G+ P +G +R+ PE TEERR L K E +K Sbjct: 62 LIQPWEPNLLGEIEKAIMMSDIGITPNNDGSAIRLNFPELTEERRKDLAKDIKKRGETTK 121 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++VRNIRRD D LKK K+ + ++D + E+++QK+TD IK ID E K KEIM Sbjct: 122 VAVRNIRRDANDELKKMNKANELNDDQLKDQESEVQKLTDVYIKKIDDAVEAKSKEIM 179 >gi|260654918|ref|ZP_05860406.1| ribosome recycling factor [Jonquetella anthropi E3_33 E1] gi|260630420|gb|EEX48614.1| ribosome recycling factor [Jonquetella anthropi E3_33 E1] Length = 183 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 66/177 (37%), Positives = 112/177 (63%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 ++K M I + + + +RTGR P ++ VK + YG+ PL Q+A V+VL+ R L + Sbjct: 5 DVKTPMQKVIDHMNGEFLGIRTGRAHPGLVGDVKADYYGTPTPLKQMATVSVLDARTLQI 64 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 + +D+ V ++E+ I +N+G+ P+V+G+V+R+ +PE T ERR L K E++KI+ Sbjct: 65 TPYDQTAVKTIEKAILAANIGVTPVVDGKVIRLSMPELTGERRKELCKYVSKLGEEAKIA 124 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +RN+RRD D KK+ +G+ SED + + + +QK TDS + +D +EK+KE+M Sbjct: 125 LRNLRRDANDFYKKAEDAGEISEDQLKTELDVVQKETDSFVSKVDELVKEKEKEVME 181 >gi|300088119|ref|YP_003758641.1| ribosome recycling factor [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527852|gb|ADJ26320.1| ribosome recycling factor [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 186 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 64/179 (35%), Positives = 117/179 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q + +MG +I L +++ +RTGR S ++++ V+V+ G+ P++ +ANV+V RML Sbjct: 7 MQTAEKKMGISIEVLHRELGAIRTGRASTAIIEHVQVDYAGTPTPIHHLANVSVPNARML 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WD+ M+ +E+ I +S+LGL P +GQV+R+ +P ++ERRL L ++ E K Sbjct: 67 LIQPWDRTMMGPIEKAIMKSDLGLTPSNDGQVIRLSIPPLSQERRLELTRMVAKRVEDDK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +++RN+RR+ +DHLKK K + S+D ++ +QK+TDS I D ++K +E+++ Sbjct: 127 VAIRNLRREALDHLKKMEKDKELSQDESRRAQDALQKLTDSYIAKADELGKQKDEELLN 185 >gi|225166035|ref|ZP_03727781.1| ribosome recycling factor [Opitutaceae bacterium TAV2] gi|224799722|gb|EEG18205.1| ribosome recycling factor [Opitutaceae bacterium TAV2] Length = 181 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 66/178 (37%), Positives = 112/178 (62%), Gaps = 4/178 (2%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + RM + + + TG+ +P+M++ V ++AYGS + + A + + RM+ Sbjct: 6 LTEAQTRMKKAVDHTLHEFANIHTGKATPAMVEGVMIDAYGSQMRIKDCAAIMTPDARMI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK +V ++ +GI +NLG NP V+G ++R+P+PE + ERRL VKVA+ AE+ + Sbjct: 66 VIQPWDKGLVQAISKGIQIANLGFNPNVDGNLIRVPLPEMSRERRLEFVKVANRLAEEGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 + VRN+RRD ++++KK+ K SED LE DIQ +TD +I+ ++ K+KE++ Sbjct: 126 VHVRNLRRDTLENVKKA----KLSEDETKRLEKDIQTLTDKSIEEVNKHLAAKEKELL 179 >gi|119477105|ref|ZP_01617341.1| ribosome releasing factor [marine gamma proteobacterium HTCC2143] gi|119449468|gb|EAW30706.1| ribosome releasing factor [marine gamma proteobacterium HTCC2143] Length = 185 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 73/179 (40%), Positives = 108/179 (60%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ ++RM T+ L + +RTGR PS+LD ++V YGS PL+Q+A + V + R L Sbjct: 7 QDAQERMQKTLVALGGALNKIRTGRAHPSILDGLRVNYYGSETPLSQLAAINVEDARTLS 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K +V VER I +S+LGLNP G V+RIP+P TEE R + A AE S++ Sbjct: 67 VVPWEKAIVPDVERAIMKSDLGLNPSTAGTVIRIPMPMLTEETRRGFTRQAKKEAEHSRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RNIRRD + +K +K + SED ++DIQK+TD + I+ K+ ++M Sbjct: 127 SIRNIRRDVIADIKDLQKEKEISEDQERKAQDDIQKLTDRFVGEIEVILSAKEADLMEI 185 >gi|291544887|emb|CBL17996.1| ribosome recycling factor [Ruminococcus sp. 18P13] Length = 184 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 66/186 (35%), Positives = 113/186 (60%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 MN+ I L +++M + L + ++R GR +P +LD V V+ YG+ P+NQ+A VTV Sbjct: 1 MNEHIKLA--EEKMDKALQHLAAEFASIRAGRANPGILDKVTVDYYGTPTPVNQMAAVTV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R+L++ WD M+ ++ + + S++G+ P +G+V+R+ P+ TE+RR + K Sbjct: 59 SEARILLIQPWDASMIKAINKALLASDIGITPTDDGKVIRLVFPQLTEDRRKEICKSIKK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 Y +++K++VRN+RRD M+ K +K+ + +ED + E IQ ITD DS +K+ Sbjct: 119 YGDETKVAVRNVRRDTMEKFKAMKKNSEITEDELKDAEKKIQNITDKFCTQTDSMVSDKE 178 Query: 181 KEIMHF 186 KE+M Sbjct: 179 KEVMSL 184 >gi|34397824|gb|AAQ66885.1| ribosome recycling factor [Porphyromonas gingivalis W83] Length = 173 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 68/171 (39%), Positives = 106/171 (61%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M + +L + + +R G+ SP +LD + V YG+ PL QVA++ + + +VV+ W++ Sbjct: 1 MEKAVEYLDEQLSHVRAGKASPKLLDGIMVMYYGNATPLTQVASINTPDAKTIVVTPWER 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 ++ +E+ I +S LG+ P G+++R+ +P TEERR LVK AE +K+SVRN R Sbjct: 61 SLIKDIEKAIMDSPLGITPENNGELIRLGLPPLTEERRRQLVKQTKGDAEDAKVSVRNAR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RD +D +KKS K+ ED+ E ++QK+ D IK ID F EK+KEIM Sbjct: 121 RDAIDAIKKSVKTDGTPEDVAKDAEAEMQKVHDRYIKKIDELFAEKEKEIM 171 >gi|319943823|ref|ZP_08018104.1| ribosome recycling factor [Lautropia mirabilis ATCC 51599] gi|319743056|gb|EFV95462.1| ribosome recycling factor [Lautropia mirabilis ATCC 51599] Length = 187 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 69/177 (38%), Positives = 108/177 (61%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + +M I + + +RTGR P +LD + V+ YG+ P+NQVAN+++ + R L+ Sbjct: 9 KSAEQKMQKGIESFRNALSKIRTGRPHPGVLDHIHVDYYGTSTPINQVANISLADARTLL 68 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+VW+K M VE+ I +S+LG+NP G +R+P+P +EERR +VKV E +K+ Sbjct: 69 VNVWEKSMAVVVEKAIRDSDLGVNPQSMGTAIRVPMPPLSEERRREIVKVTKHEGEAAKV 128 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +R +RR+ D LK + K+ + SED + DIQK TD I ID K++EIM Sbjct: 129 VIRGVRREANDELKAAAKAKEISEDDERRGQEDIQKTTDRFIAEIDKLLAAKEQEIM 185 >gi|260591376|ref|ZP_05856834.1| ribosome recycling factor [Prevotella veroralis F0319] gi|260536742|gb|EEX19359.1| ribosome recycling factor [Prevotella veroralis F0319] Length = 186 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 72/178 (40%), Positives = 112/178 (62%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +RM +L ++ +R GR + ++LD V+V++YGS VPLNQVA+V V + R + Sbjct: 8 LNDASERMEMAAMYLSDELQRIRAGRANVAILDGVRVDSYGSKVPLNQVASVMVPDARTI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK+ + +E+ I +S++G+ P G+++R+ +P+ TEERR LVK + E++K Sbjct: 68 AIKPWDKKAIKDIEKAIMDSDVGITPENNGEMIRLNLPQPTEERRRDLVKQCNKIGERAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 + +RN+R D D LKK+ K G SED E +QKI D IK +D EK+KEIM Sbjct: 128 VEIRNVRSDIKDKLKKAIKDG-LSEDNEKDAELSLQKIHDKFIKQVDELLAEKQKEIM 184 >gi|161579528|ref|NP_905986.2| ribosome recycling factor [Porphyromonas gingivalis W83] gi|39932026|sp|Q7MTP6|RRF_PORGI RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor Length = 186 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 68/171 (39%), Positives = 106/171 (61%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M + +L + + +R G+ SP +LD + V YG+ PL QVA++ + + +VV+ W++ Sbjct: 14 MEKAVEYLDEQLSHVRAGKASPKLLDGIMVMYYGNATPLTQVASINTPDAKTIVVTPWER 73 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 ++ +E+ I +S LG+ P G+++R+ +P TEERR LVK AE +K+SVRN R Sbjct: 74 SLIKDIEKAIMDSPLGITPENNGELIRLGLPPLTEERRRQLVKQTKGDAEDAKVSVRNAR 133 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RD +D +KKS K+ ED+ E ++QK+ D IK ID F EK+KEIM Sbjct: 134 RDAIDAIKKSVKTDGTPEDVAKDAEAEMQKVHDRYIKKIDELFAEKEKEIM 184 >gi|86156709|ref|YP_463494.1| ribosome recycling factor [Anaeromyxobacter dehalogenans 2CP-C] gi|123499108|sp|Q2IMM1|RRF_ANADE RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|85773220|gb|ABC80057.1| ribosome recycling factor [Anaeromyxobacter dehalogenans 2CP-C] Length = 188 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 70/180 (38%), Positives = 111/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++ R+ T+ L+ D+ +RTGR S +LD V+V+ YG+ PLNQVA ++V E R++ Sbjct: 9 LGDLHGRILKTLDQLRTDLSAVRTGRASLHLLDNVRVDYYGTPTPLNQVATMSVPEARLI 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV W+K M+ +E+ I E+NLGLNP+ + ++R+P+P TEERR +VK E+ K Sbjct: 69 VVKPWEKSMIPPIEKAIREANLGLNPMSDKDLVRVPIPALTEERRKEIVKQVKHKGEEHK 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I+VRN+RR+ + ++ + K G S D +QK TD +K ID K+K+++ Sbjct: 129 IAVRNVRREAKELIEVAEKDGDISGDDAEKALEKMQKETDDGVKKIDEIVAAKEKDVLQV 188 >gi|146298338|ref|YP_001192929.1| ribosome recycling factor [Flavobacterium johnsoniae UW101] gi|190360242|sp|A5FMF6|RRF_FLAJO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|146152756|gb|ABQ03610.1| ribosome recycling factor [Flavobacterium johnsoniae UW101] Length = 187 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 73/186 (39%), Positives = 117/186 (62%), Gaps = 3/186 (1%) Query: 1 MNQVID--LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 M + ID L++ ++ M +I+ L+K+ + +R G+ SP+ML V V+ YGS PL+QV+ + Sbjct: 1 MTEEIDFILESTEESMNGSIAHLEKEFLNIRAGKASPAMLGGVFVDYYGSATPLSQVSKI 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 +V + R + + ++K M+ ++E+ I +N+G NP+ G V+ I VP TEERR L K A Sbjct: 61 SVPDARTITLQPFEKNMLQAIEKAILIANIGFNPMNNGDVIIISVPPLTEERRRDLAKQA 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 + AE +KI +RN+R+D +KK K G SED+ S E ++Q +T++ IK ID Sbjct: 121 KSEAEDAKIGIRNVRKDANTDIKKLEKEG-TSEDICKSAEEEVQNLTNTYIKKIDELLAA 179 Query: 179 KKKEIM 184 K+ EIM Sbjct: 180 KEAEIM 185 >gi|189345927|ref|YP_001942456.1| ribosome recycling factor [Chlorobium limicola DSM 245] gi|238692183|sp|B3EFU4|RRF_CHLL2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|189340074|gb|ACD89477.1| ribosome recycling factor [Chlorobium limicola DSM 245] Length = 186 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 71/177 (40%), Positives = 108/177 (61%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q I+ +M TI + ++ ++RTG+ + ++LD VKVEAYG +PL QV N+ V++ L+ Sbjct: 8 QKIEPKMKKTIEAFQHEIASIRTGKATTTLLDRVKVEAYGQLMPLKQVGNIGVMDVHTLI 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V VWDK MV++ ER I ++NLGLNP +GQ +R+ +P TEERR VK+ + E SK+ Sbjct: 68 VQVWDKSMVSATERAIRDANLGLNPSADGQNIRVSIPPLTEERRKEFVKLTKKFGEDSKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 S+RN+RRD + ++K K SED + + + K + K+KEIM Sbjct: 128 SLRNLRRDMIHDIEKLEKDKAISEDDKNRGKKEADDLLHKFEKQLSDLIALKEKEIM 184 >gi|108798972|ref|YP_639169.1| ribosome recycling factor [Mycobacterium sp. MCS] gi|119868087|ref|YP_938039.1| ribosome recycling factor [Mycobacterium sp. KMS] gi|126434572|ref|YP_001070263.1| ribosome recycling factor [Mycobacterium sp. JLS] gi|123070322|sp|Q1BAH1|RRF_MYCSS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166230802|sp|A3PXZ5|RRF_MYCSJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166230803|sp|A1UEJ1|RRF_MYCSK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|108769391|gb|ABG08113.1| ribosome recycling factor [Mycobacterium sp. MCS] gi|119694176|gb|ABL91249.1| ribosome recycling factor [Mycobacterium sp. KMS] gi|126234372|gb|ABN97772.1| ribosome recycling factor [Mycobacterium sp. JLS] Length = 185 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 65/178 (36%), Positives = 111/178 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++M +S + D+ ++RTGR +P M + V+ YG+ P+ Q++++ V E RM+ Sbjct: 6 LFDAEEKMEKAVSVARDDLSSIRTGRANPGMFSRINVDYYGATTPITQLSSINVPEARMV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ ++ + ++E I S+LG+NP +G ++R+ +P+ TEERR LVK A A E +K Sbjct: 66 VIKPYEANQLRNIEDAIRNSDLGVNPTNDGNIIRVSIPQLTEERRRDLVKQAKAKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +SVRNIRR M+ L + +K G+A ED V+ E D+ K T + ID + K+ E++ Sbjct: 126 VSVRNIRRKAMEELARIKKDGEAGEDEVSRAEKDLDKTTHTYTHQIDELVKHKEGELL 183 >gi|269123002|ref|YP_003305579.1| ribosome recycling factor [Streptobacillus moniliformis DSM 12112] gi|268314328|gb|ACZ00702.1| ribosome recycling factor [Streptobacillus moniliformis DSM 12112] Length = 185 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 70/172 (40%), Positives = 109/172 (63%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M T+ K +R GR + SM+D V V+ YG PLNQV +VT E R+LV+ WD Sbjct: 12 KMEKTLESTKVRFSHVRAGRANVSMVDGVLVDYYGQMSPLNQVGSVTAPEARLLVIDPWD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K ++ ++E+ I +N+G NP +G+++R+ VPE TE+RR VKV AE+ K++ RNI Sbjct: 72 KSLIPAIEKAILAANIGFNPSNDGRIIRLVVPELTEDRRKEYVKVVKKEAEEGKVAARNI 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 R+D + ++K K + +ED + +E IQK+TD IK+ID +K+KE++ Sbjct: 132 RKDYNNKVRKMEKDSEITEDDLKHVEEKIQKLTDECIKHIDELLAKKEKELL 183 >gi|284107227|ref|ZP_06386368.1| ribosome recycling factor [Candidatus Poribacteria sp. WGA-A3] gi|283829974|gb|EFC34253.1| ribosome recycling factor [Candidatus Poribacteria sp. WGA-A3] Length = 186 Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 67/174 (38%), Positives = 109/174 (62%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M + LKK++ ++R R S S+ D +KV+ YG+ L QV ++++ + R++++ WD Sbjct: 13 KMDGALDHLKKELGSIRGSRASLSLFDHIKVDYYGTPTALQQVGSLSMPDSRLIMIQPWD 72 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + +E+ I S+LGLNP +G+V+RIP+P +EERR VKV Y E++KI +R I Sbjct: 73 PTSIKDIEKSILSSDLGLNPSNDGKVIRIPIPALSEERRKEFVKVCRKYGEETKIHIRGI 132 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RR+G D LK+ +K +ED + E IQKI D IK +D ++K++EI+ Sbjct: 133 RREGNDELKRLQKDATITEDDLRRGEATIQKIVDGKIKLVDELLKKKEEEILEI 186 >gi|229495839|ref|ZP_04389565.1| ribosome recycling factor [Porphyromonas endodontalis ATCC 35406] gi|229317152|gb|EEN83059.1| ribosome recycling factor [Porphyromonas endodontalis ATCC 35406] Length = 187 Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 71/177 (40%), Positives = 106/177 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q + M + I +L + + +R G+ +P +LD + V YG+ PLNQV VTV + R +V Sbjct: 9 QQAETGMQNAIEYLDEKLAHIRAGKANPKILDDIMVSYYGTMTPLNQVGTVTVPDARTIV 68 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++ W+K+++ +E+ I +S LG+ P G ++RI +P TEERR LVK E++KI Sbjct: 69 ITPWEKKIIKDIEKAIIDSPLGIMPENNGDLIRIGIPPLTEERRKVLVKQVKGEVEEAKI 128 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 SVRN RRD +D +KKS K+ ED+ E IQK+ D I D F K+KEI+ Sbjct: 129 SVRNARRDAIDAVKKSVKADGTPEDVAKDAEAAIQKLHDKYISRCDELFAAKEKEIL 185 >gi|296112767|ref|YP_003626705.1| ribosome recycling factor [Moraxella catarrhalis RH4] gi|295920461|gb|ADG60812.1| ribosome recycling factor [Moraxella catarrhalis RH4] gi|326561010|gb|EGE11375.1| ribosome recycling factor [Moraxella catarrhalis 7169] gi|326564386|gb|EGE14614.1| ribosome recycling factor [Moraxella catarrhalis 12P80B1] gi|326566761|gb|EGE16900.1| ribosome recycling factor [Moraxella catarrhalis 103P14B1] gi|326567397|gb|EGE17512.1| ribosome recycling factor [Moraxella catarrhalis BC1] gi|326569316|gb|EGE19376.1| ribosome recycling factor [Moraxella catarrhalis BC8] gi|326571477|gb|EGE21492.1| ribosome recycling factor [Moraxella catarrhalis BC7] gi|326575240|gb|EGE25168.1| ribosome recycling factor [Moraxella catarrhalis CO72] gi|326576673|gb|EGE26580.1| ribosome recycling factor [Moraxella catarrhalis 101P30B1] gi|326577652|gb|EGE27529.1| ribosome recycling factor [Moraxella catarrhalis O35E] Length = 184 Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 76/173 (43%), Positives = 108/173 (62%), Gaps = 1/173 (0%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM +I L+ LRTGR P +L V V YGS PLNQVA++ V + R L+V ++ Sbjct: 12 RMQKSIEALEAAFSKLRTGRAHPGILSGVMVSYYGSDTPLNQVASINVEDSRTLLVQPFE 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + MV +V++ I E++LGLNP+ V+R+P+P TEE R + K+A AE+++ISVRNI Sbjct: 72 RSMVQAVDKAIREADLGLNPMT-ADVIRVPMPALTEETRRDMQKIARNDAEQTRISVRNI 130 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 RRD + +K K + SED +DIQK+TD I IDS E+K+ E+M Sbjct: 131 RRDMLSDIKDLLKDKEISEDDERRAADDIQKLTDKFIATIDSRLEKKESELME 183 >gi|168045141|ref|XP_001775037.1| predicted protein [Physcomitrella patens subsp. patens] gi|162673624|gb|EDQ60144.1| predicted protein [Physcomitrella patens subsp. patens] Length = 264 Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 67/172 (38%), Positives = 113/172 (65%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 +RM ++ K T+RTGR +PS+LD V+VE YG++V L +A +T + ++++ + Sbjct: 90 ERMEKSLEATKASFNTVRTGRATPSLLDRVQVEYYGTNVILKSIAQITTPDGSTILITPF 149 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 DK + S+E+ + +S++G+ P +G V+R+ VP+ T +RR L+K+ +E+ K+++RN Sbjct: 150 DKSSLTSIEKSLVKSDIGITPNNDGNVIRLNVPQLTADRRKELLKLVSKLSEEGKVAIRN 209 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +RRD + +K K K SED V L DIQK+TD IK ID+ F++K+KE+ Sbjct: 210 VRRDAIKSYEKLEKEKKLSEDNVKDLSGDIQKMTDDYIKKIDALFKQKEKEL 261 >gi|260551688|ref|ZP_05825762.1| ribosome releasing factor [Acinetobacter sp. RUH2624] gi|260405431|gb|EEW98925.1| ribosome releasing factor [Acinetobacter sp. RUH2624] Length = 184 Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 75/172 (43%), Positives = 109/172 (63%), Gaps = 1/172 (0%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM T+ L++ +RTGR PS+L+ V V YGS VPLNQVANV V + R L+V ++ Sbjct: 12 RMMKTLESLEQGFAKVRTGRAHPSILNGVMVPYYGSDVPLNQVANVGVEDSRTLIVQPFE 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + MV+++++ I ES+LGLNPI +R+P+P TEE R + KVA + AE +K+++RNI Sbjct: 72 RTMVSAIDKAIRESDLGLNPIT-ADSIRVPLPALTEETRRDMQKVARSEAENAKVAIRNI 130 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD + +K K + SED +DIQKITD + +D K+ E+M Sbjct: 131 RRDVLGDIKALLKEKEISEDDERRAGDDIQKITDKYVAEVDKRLAAKEAELM 182 >gi|327441021|dbj|BAK17386.1| ribosome recycling factor [Solibacillus silvestris StLB046] Length = 185 Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 64/163 (39%), Positives = 109/163 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M +I+ +++ ++R G + S+LD + V+ YGS P+NQ+A ++V E R+L Sbjct: 6 LNQAQEKMTKSINAFSRELASIRAGVANASLLDRITVDYYGSPTPINQMAGISVPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +DK ++ +E+ I S++G+ P +G V+R+ VP TEERR LVK +E++K Sbjct: 66 VIQPYDKSILGEIEKAIMRSDIGITPTNDGNVIRLAVPALTEERRKELVKQVKKESEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTI 169 ++VRN+RRD D LKK K+G+ +ED + +DIQK+TD++I Sbjct: 126 VAVRNVRRDANDDLKKLEKNGEITEDELRGFNDDIQKLTDNSI 168 >gi|304414212|ref|ZP_07395580.1| ribosome recycling factor [Candidatus Regiella insecticola LSR1] gi|304283426|gb|EFL91822.1| ribosome recycling factor [Candidatus Regiella insecticola LSR1] Length = 185 Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 71/165 (43%), Positives = 103/165 (62%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 N +RM I+ + +RTGR SPS+LD +KVE YGS PL Q+A+V + R L + Sbjct: 8 NAIERMEKCIATFQTQSSRIRTGRASPSILDGIKVEYYGSATPLRQLASVVAEDARTLAI 67 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 V+D+ +++ VE+ I S+LGLNP G +RIP+P TEERR L+K+ AE S+++ Sbjct: 68 DVFDRNLISVVEKAIIASDLGLNPSSAGSRIRIPLPPLTEERRKELIKIVGQDAENSRVA 127 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNID 173 +RN+RRD + +K K SED ++ IQK+TD +IK ID Sbjct: 128 IRNVRRDANEKIKVLLKDKAISEDEERQAQDKIQKLTDGSIKKID 172 >gi|326336602|ref|ZP_08202771.1| ribosome recycling factor [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691267|gb|EGD33237.1| ribosome recycling factor [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 184 Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 74/186 (39%), Positives = 115/186 (61%), Gaps = 6/186 (3%) Query: 1 MNQVID--LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 MN+ ID L++ K+ M +++ L+K ++ +R G+ SP ML V V+ YGS PL+QVANV Sbjct: 1 MNEEIDFILESTKEAMQGSVAHLEKSLLNIRAGKASPQMLGSVFVDYYGSQTPLSQVANV 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 + R + + W+K M++++E+ I +NLG NP+ G+ + I VP TEERR LVK A Sbjct: 61 NTPDSRTISIQPWEKNMLSTIEKAIMVANLGFNPMNNGETIIISVPPLTEERRKELVKQA 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 +E++KI VRN R++ +KK + S+D+ E +QK+TD IK ID + Sbjct: 121 KGESEEAKIGVRNARQEANKEIKKI----EISDDIKKDTEERVQKLTDKYIKQIDEILAK 176 Query: 179 KKKEIM 184 K+ EI+ Sbjct: 177 KEAEIL 182 >gi|240171728|ref|ZP_04750387.1| ribosome recycling factor [Mycobacterium kansasii ATCC 12478] Length = 185 Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 64/178 (35%), Positives = 111/178 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++M +S + D+ T+RTGR +P M + ++ YG++ P+ Q+A++ V E R++ Sbjct: 6 LFDAEEKMEKAVSVARDDLSTIRTGRANPGMFSRIVIDYYGTNTPITQLASINVPEARLV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ ++ + ++E I S+LG+NP +G ++R+ +P+ TEERR LVK A E+++ Sbjct: 66 VIKPYEANQLHAIETAIRNSDLGVNPTNDGTLIRVAIPQLTEERRRELVKQAKHKGEEAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +SVRNIRR M+ L + RK G+A ED V E D+ K T + ID + K+ E++ Sbjct: 126 VSVRNIRRKAMEELHRIRKDGEAGEDEVGRAEKDLDKTTHHYVAQIDELVKHKEGELL 183 >gi|110636998|ref|YP_677205.1| ribosome recycling factor [Cytophaga hutchinsonii ATCC 33406] gi|123163830|sp|Q11XK1|RRF_CYTH3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|110279679|gb|ABG57865.1| ribosome recycling factor [Cytophaga hutchinsonii ATCC 33406] Length = 186 Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 73/178 (41%), Positives = 107/178 (60%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + KD M I + ++ +R G+ SP+M D + V+ YGS PL QVA V+V EPR + Sbjct: 8 LDDAKDSMQKAIKHTELELSKIRAGKASPNMFDGIMVDYYGSSTPLAQVATVSVPEPRSI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + ++K MV ++E+ I ++N+G NP +G V+RI VP TEERR LVK A E K Sbjct: 68 TIKAYEKSMVTTIEKAIRDANMGFNPQNDGDVIRINVPPLTEERRRDLVKQTKAEGESGK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 + +R IR++ D LKK K G ASED V E +Q +T+ T +++ K+KE+M Sbjct: 128 VRIRKIRQETNDELKKLLKDG-ASEDEVKRAEEVVQALTNDTSAKLEALIAAKEKELM 184 >gi|300812543|ref|ZP_07092960.1| ribosome recycling factor [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496416|gb|EFK31521.1| ribosome recycling factor [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 185 Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 70/175 (40%), Positives = 108/175 (61%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K M +I + ++ T+R G + S+LD V VE YG PL Q+A +T+ EPR+L+++ Sbjct: 10 KSNMNKSIEVYQSNLATVRAGVANASLLDRVMVEYYGVPTPLVQLAGITIPEPRVLMITP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +DK + +E I S+LGL P +G V+R+ +P+ T ERR + K AE++KI+VR Sbjct: 70 YDKTSLNDIEHAILASDLGLTPANDGNVIRLVIPQLTGERRQEIAKEVGKLAEEAKIAVR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 N+R++ M LKK K G+ +ED LE ++QK+TD + K ID + K+KEI Sbjct: 130 NVRQEAMKALKKQEKDGEITEDEERRLEKEVQKVTDESTKKIDQMADNKRKEITQ 184 >gi|188995696|ref|YP_001929948.1| ribosome recycling factor [Porphyromonas gingivalis ATCC 33277] gi|238689272|sp|B2RLV6|RRF_PORG3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|188595376|dbj|BAG34351.1| putative ribosome recycling factor [Porphyromonas gingivalis ATCC 33277] Length = 186 Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 68/171 (39%), Positives = 106/171 (61%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M + +L + + +R G+ SP +LD + V YG+ PL QVA++ + + +VV+ W++ Sbjct: 14 MEKAVEYLDEQLSHVRAGKASPKLLDGIMVMYYGNATPLTQVASINTPDAKTIVVTPWER 73 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 ++ +E+ I +S LG+ P G+++R+ +P TEERR LVK AE +K+SVRN R Sbjct: 74 SLIKDIEKAIMDSPLGITPENNGELIRLGLPPLTEERRRQLVKQIKGDAEDAKVSVRNAR 133 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RD +D +KKS K+ ED+ E ++QK+ D IK ID F EK+KEIM Sbjct: 134 RDAIDAIKKSVKTDGTPEDVAKDAEAEMQKVHDRYIKKIDELFAEKEKEIM 184 >gi|16331151|ref|NP_441879.1| ribosome recycling factor [Synechocystis sp. PCC 6803] gi|3122780|sp|P74456|RRF_SYNY3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|1653645|dbj|BAA18557.1| ribosome releasing factor [Synechocystis sp. PCC 6803] Length = 182 Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 68/177 (38%), Positives = 108/177 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +KD M ++ ++ T+RTGR + S+LD + VE YG+ PL +A + + + Sbjct: 3 LAELKDHMQKSVEATQRSFNTIRTGRANASLLDRITVEYYGAETPLKSLATIGTPDASTI 62 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +D + ++E+ I S+LGL P +G+V+R+ +P T ERR LVKVA AE+ K Sbjct: 63 VIQPFDMGSIGTIEKAISLSDLGLTPNNDGKVIRLNIPPLTAERRKELVKVAGKLAEEGK 122 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +++RNIRRD +D ++K K+ SED L+ +IQK+TD + K ID K+K+I Sbjct: 123 VAIRNIRRDAVDEVRKQEKNSDISEDEARDLQEEIQKLTDQSTKRIDELLAAKEKDI 179 >gi|320109136|ref|YP_004184726.1| ribosome recycling factor [Terriglobus saanensis SP1PR4] gi|319927657|gb|ADV84732.1| ribosome recycling factor [Terriglobus saanensis SP1PR4] Length = 194 Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 71/178 (39%), Positives = 108/178 (60%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 I+ RM T+ + ++ +RTGR S MLD ++V+ YGS +P+NQ+A V+ E ++VV Sbjct: 17 QIQTRMNKTVDDFRASLVGVRTGRASVHMLDAIRVDYYGSEMPVNQLATVSTPEATLIVV 76 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 S +D +V +E+ I S G NP+ +G+V+RIP+P TEERR VK + E K S Sbjct: 77 SPFDPTVVPMIEKAIRNSGQGFNPMHDGKVIRIPIPPMTEERRKEAVKQLASVLEDHKTS 136 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +RNIRRDG D +KK+ K S D + Q +TD+ IK ++ F+ K+KE++ Sbjct: 137 IRNIRRDGNDTIKKATKDKLISADDEKRAMEETQAMTDTEIKRVEDLFKAKEKEVLSL 194 >gi|145219223|ref|YP_001129932.1| ribosome recycling factor [Prosthecochloris vibrioformis DSM 265] gi|189044065|sp|A4SD71|RRF_PROVI RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|145205387|gb|ABP36430.1| ribosome recycling factor [Chlorobium phaeovibrioides DSM 265] Length = 186 Score = 138 bits (347), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 69/178 (38%), Positives = 107/178 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q + ++ +I + ++ ++RTG+ + ++LD VKVEAYG +PL QV N+ V + L Sbjct: 7 IQKNEAKLKKSIEAFQHEIASIRTGKATTALLDRVKVEAYGQLMPLKQVGNIGVADVHTL 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V VWDK MV E+ I ++NLGLNP+ EGQ +R+ +P TEERR VK+ + E SK Sbjct: 67 MVQVWDKGMVGPAEKAIRDANLGLNPVAEGQSIRVSIPPLTEERRKEFVKLTRKFGEDSK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +S+RN+RRD + ++K K ED + D ++ K I+ K+KEIM Sbjct: 127 VSLRNLRRDMIQEIEKLEKEKTIGEDEKNRGKKDADELLHKYEKQINELISHKEKEIM 184 >gi|163753790|ref|ZP_02160913.1| ribosome recycling factor (ribosome releasing factor) [Kordia algicida OT-1] gi|161326004|gb|EDP97330.1| ribosome recycling factor (ribosome releasing factor) [Kordia algicida OT-1] Length = 184 Score = 138 bits (347), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 72/174 (41%), Positives = 106/174 (60%), Gaps = 4/174 (2%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K+ M I+ L K ++ +R G+ SP+ML V V+ YGS PL+QVANV + R + + Sbjct: 13 KEGMDSAITHLTKQLLGIRAGKASPAMLSSVMVDYYGSQTPLSQVANVNSTDARTITIQP 72 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 W+K M+ +E+GI +NLG NP+ G+ + I VP TEERR LVK + A AE +K+ +R Sbjct: 73 WEKSMIQEIEKGILVANLGFNPMNNGESVIINVPPLTEERRRELVKQSKAEAEDAKVGIR 132 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 N R++ +KK S+D+ + E D+Q +TD +K ID F K+KEIM Sbjct: 133 NARQEANKEIKKL----DVSDDLKKNAEIDVQALTDDYVKKIDEIFSVKEKEIM 182 >gi|169630269|ref|YP_001703918.1| ribosome recycling factor [Mycobacterium abscessus ATCC 19977] gi|238688906|sp|B1MDE3|RRF_MYCA9 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|169242236|emb|CAM63264.1| Ribosome recycling factor (Ribosome-releasing factor [Mycobacterium abscessus] Length = 185 Score = 138 bits (347), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 65/179 (36%), Positives = 106/179 (59%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++M ++ + D T+RTGR +P M V ++ YG+ P+ QVA + V E RM+ Sbjct: 6 LLDAEEKMEKAVTVARDDFATIRTGRANPGMFQRVVIDYYGTPTPITQVAGINVPEARMV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ ++ + ++E I S+LGLNP +G ++R+ +P+ TEERR LVK A E +K Sbjct: 66 VIKPYESNQLKAIEDAIRNSDLGLNPSNDGSIIRVAIPQLTEERRRELVKQAKGKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +++RNIRR D L + +K G+A ED V E D+ K T + ID + K+ E++ Sbjct: 126 VTLRNIRRKANDELNRIKKDGEAGEDEVGRAEKDLDKTTAQYVSQIDELVKHKEGELLE 184 >gi|254819038|ref|ZP_05224039.1| ribosome recycling factor [Mycobacterium intracellulare ATCC 13950] Length = 185 Score = 138 bits (347), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 65/179 (36%), Positives = 109/179 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++M ++ + D+ T+RTGR +P M + ++ YG+ P+ Q+A++ V E R++ Sbjct: 6 LFDAEEKMEKAVAVARDDLSTIRTGRANPGMFSRIVIDYYGAATPITQLASINVPEARLV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ ++ V ++E I S+LG+NP +G ++R+ VP+ TEERR LVK A + E +K Sbjct: 66 VIKPYEASQVGAIETAIRNSDLGVNPTNDGTLIRVAVPQLTEERRRELVKQAKSKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +SVRNIRR M+ L + RK G+A ED V E D+ K T I+ + K+ E++ Sbjct: 126 VSVRNIRRKAMEELHRIRKDGEAGEDEVGRAEKDLDKTTHQYTTQIEELVKHKEGELLE 184 >gi|116514309|ref|YP_813215.1| ribosome recycling factor [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122274959|sp|Q049U5|RRF_LACDB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|116093624|gb|ABJ58777.1| ribosome recycling factor [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 185 Score = 138 bits (347), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 70/175 (40%), Positives = 109/175 (62%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K M +I + ++ T+R G + S+LD V VE YG PL Q+A +T+ EPR+L+++ Sbjct: 10 KRNMNKSIEVYQSNLATVRAGVANASLLDRVMVEYYGVPTPLVQMAGITIPEPRVLMITP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +DK + +E I S+LGL P +G V+R+ +P+ T ERR + K AE++KI+VR Sbjct: 70 YDKSSLNDIEHAILASDLGLTPANDGNVIRLIIPQLTGERRQEIAKEVGKLAEEAKIAVR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 N+R++ M LKK K G+ +ED LE ++QK+TD + K ID + K+KEI+ Sbjct: 130 NVRQEAMKALKKQEKDGEITEDEERRLEKEVQKVTDESTKKIDQMADNKRKEIIQ 184 >gi|208780540|ref|ZP_03247879.1| ribosome recycling factor [Francisella novicida FTG] gi|208743515|gb|EDZ89820.1| ribosome recycling factor [Francisella novicida FTG] Length = 185 Score = 138 bits (347), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 68/178 (38%), Positives = 108/178 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ ++RM ++ L D+ +RTGR P +L V ++ YG + Q AN+TVL+ R L Sbjct: 6 LKDAENRMKKSLEVLADDLAKIRTGRAHPDLLAHVTIDYYGVETTITQAANITVLDARTL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ W+K + + +E+ I S+LGLNP G LR+P+P EERR LVK+ + E + Sbjct: 66 GITPWEKGLSSKIEKAILTSDLGLNPTNLGDSLRVPMPALNEERRKELVKLVKSETEAGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +S+RNIRRD +K+ K + +ED E+DIQKITD I D+ +K++++M Sbjct: 126 VSIRNIRRDANGDIKELLKEKEITEDQAKKAEDDIQKITDKMIAQADALAAKKEQDLM 183 >gi|325681407|ref|ZP_08160933.1| ribosome recycling factor [Ruminococcus albus 8] gi|324106897|gb|EGC01187.1| ribosome recycling factor [Ruminococcus albus 8] Length = 184 Score = 138 bits (347), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 70/176 (39%), Positives = 115/176 (65%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K++M +++ + D +R GR +P++LD VKVE YG+ P+NQ+A ++V E R+LV++ Sbjct: 9 KEKMEKSVNVMLSDFAAIRAGRANPAVLDKVKVEYYGAPTPVNQMAAISVAEARILVITP 68 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 WDK + S+E+ I S++G+NP +GQ +R+ P+ TE+RR +VK E K++VR Sbjct: 69 WDKSTLKSIEKAIQASDIGINPQNDGQTIRLIFPQLTEDRRKEIVKDVKKGGEDCKVAVR 128 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +IRRD ++ +K +K+ + +ED E IQK+TD +K ID+ EK+KEI+ Sbjct: 129 SIRRDAIEKIKAKKKNNEITEDEQKDGEEAIQKLTDKFVKEIDAHVAEKEKEILSI 184 >gi|111023540|ref|YP_706512.1| ribosome recycling factor [Rhodococcus jostii RHA1] gi|122955102|sp|Q0S282|RRF_RHOSR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|110823070|gb|ABG98354.1| ribosome recycling factor [Rhodococcus jostii RHA1] Length = 185 Score = 138 bits (347), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 63/175 (36%), Positives = 109/175 (62%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 +++M ++ K D+ ++RTGR +P M + + ++ YG+ P+ Q+A++ V E R++VV Sbjct: 10 EEKMEKAVTVAKDDLGSIRTGRANPGMFNRIGIDYYGAFTPITQLASINVPEARLVVVKP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 ++ + ++E I S+LG+NP +G ++RI VP+ TEERR LVK A + E +K+SVR Sbjct: 70 YEASQLGAIETAIRNSDLGVNPSNDGNLIRISVPQLTEERRRELVKQAKSKGEDAKVSVR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 N+RR MD L + +K G+A ED V E ++ K T + +D + K+ E++ Sbjct: 130 NVRRKAMDELSRIQKDGEAGEDEVGRAEKELDKTTARYVAQVDELVKHKEAELLE 184 >gi|288575126|ref|ZP_06393483.1| ribosome recycling factor [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570867|gb|EFC92424.1| ribosome recycling factor [Dethiosulfovibrio peptidovorans DSM 11002] Length = 186 Score = 138 bits (347), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 66/176 (37%), Positives = 113/176 (64%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 +++++M + FLK + + +RTGR P ++ +KV+ YG+ PL Q+A ++V E R L++ Sbjct: 8 DLEEKMRKAVDFLKGEFVGIRTGRAHPGLVSDIKVDYYGASTPLKQLATISVPEGRSLLI 67 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 + +DK ++ +E+ I S+LG+ P +GQV+R+ +PE T +RR L K+ H +E+++I+ Sbjct: 68 TPFDKTVLKDLEKAILASDLGVTPQNDGQVIRLNLPELTGDRRKELTKMVHKLSEEARIA 127 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 VRN+RRD D KK + ED + IQKITD I+ ID ++K++EI+ Sbjct: 128 VRNLRRDCNDFYKKKLNESEIGEDQYHDFLDQIQKITDGYIQEIDKVMKDKEEEIL 183 >gi|225873898|ref|YP_002755357.1| ribosome recycling factor [Acidobacterium capsulatum ATCC 51196] gi|225791980|gb|ACO32070.1| ribosome recycling factor [Acidobacterium capsulatum ATCC 51196] Length = 195 Score = 138 bits (347), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 71/178 (39%), Positives = 106/178 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q +K RM + + + +LRTGR S MLD ++V+ YG+ PLNQV V + + +V Sbjct: 17 QQLKTRMDKAVKDFQTQLTSLRTGRASVQMLDQIRVDYYGTPTPLNQVGQVNTPDAQSIV 76 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V WD ++ +E + S+LG NP +G+++RIPVP TEERR +VK + E+ + Sbjct: 77 VQPWDTSILKDIENALRTSDLGFNPQNDGKIIRIPVPPMTEERRREVVKHLNKVLEEHRT 136 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 VRNIRRDG D +KK+ K SED +++QK+TD IK ++ +K+ EIM Sbjct: 137 GVRNIRRDGNDAIKKAAKDKLISEDEEKRSLDEMQKLTDEEIKRMEEISRKKEAEIMQ 194 >gi|256379903|ref|YP_003103563.1| ribosome recycling factor [Actinosynnema mirum DSM 43827] gi|255924206|gb|ACU39717.1| ribosome recycling factor [Actinosynnema mirum DSM 43827] Length = 185 Score = 138 bits (347), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 67/179 (37%), Positives = 111/179 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M ++ K+D+ T+RTGR +P+M + E YGS P+NQ+A++ V EPRM Sbjct: 6 LLEAEEKMEKAVTVSKEDLATVRTGRATPAMFSRIVAEYYGSMTPINQLASIAVPEPRMA 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV +DK + ++E+ I +S+LG+NP +G V+R+ P+ +EERR +VKVA E +K Sbjct: 66 VVKPFDKGSMTAIEKAIRDSDLGVNPSNDGTVIRVVFPQLSEERRREMVKVAKGKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +S+RNIRR + L + K G+ ED A E +++ +T I +D + K+ E++ Sbjct: 126 VSIRNIRRKAKEELDRLVKDGEVGEDDGARGEKELENVTHRYIAQVDEAMKNKEAELLE 184 >gi|295111329|emb|CBL28079.1| ribosome recycling factor [Synergistetes bacterium SGP1] Length = 185 Score = 138 bits (347), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 60/180 (33%), Positives = 116/180 (64%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 +L+ +++ M I FL+ + +++RTGR P ++ +K++ YG+ PL Q+AN+T+ E R Sbjct: 5 ELKELQESMDKAIDFLQNEYLSIRTGRAHPGLVSDIKLDYYGTPTPLKQIANITIPESRT 64 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 + ++ +D+ + ++E+ I +N+G+ P +G +R+ +PE T ERR+ L K+ AE + Sbjct: 65 IQIAPFDRTSLKAIEKAILAANIGMTPQNDGASIRLTLPELTRERRVELTKLLAKKAEDA 124 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++ VRN RRD ++ LKK K+ + +ED + +L +Q TD+ +K +D ++ K+KE++ Sbjct: 125 RVVVRNYRRDAIESLKKQEKASEITEDDLKTLTKGVQDKTDAYVKKVDEIYKAKEKEVLE 184 >gi|297624998|ref|YP_003706432.1| ribosome recycling factor [Truepera radiovictrix DSM 17093] gi|297166178|gb|ADI15889.1| ribosome recycling factor [Truepera radiovictrix DSM 17093] Length = 184 Score = 138 bits (347), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 67/178 (37%), Positives = 111/178 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + RM ++ + ++ +RTGR +P++L+ ++V YG+ PLNQ+A V+ + R L Sbjct: 5 LDEARTRMQKSLEAFENNIAAVRTGRANPAILNRIQVNYYGAQTPLNQLATVSSPDARTL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V++ +DK + +E+ I ES+LG NP G L I VP +ERR ALVK AE+++ Sbjct: 65 VITPFDKSVAKDIEKAIRESDLGFNPNNRGDSLFISVPPLNDERRRALVKQVKTMAEEAR 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++VRN+RRD + LK+ RK ++D + END+Q++TD + ID + K+++IM Sbjct: 125 VAVRNVRRDANEELKEMRKENLLTDDELRQGENDVQRLTDEFVGQIDKRVKSKEEDIM 182 >gi|284032627|ref|YP_003382558.1| ribosome recycling factor [Kribbella flavida DSM 17836] gi|283811920|gb|ADB33759.1| ribosome recycling factor [Kribbella flavida DSM 17836] Length = 185 Score = 137 bits (346), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 68/178 (38%), Positives = 108/178 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ + +M + K D +RTGR PSM + + YGS PL Q+A V EPR + Sbjct: 6 LREAEQKMAKAVEVAKNDFAAIRTGRAHPSMFASLLADYYGSPTPLQQLAGFQVPEPRTV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +DK +A++E+ I +S+LG+NP +G V+R+ +P+ TEERR +KVA AE++K Sbjct: 66 LISPYDKGAMAAIEKAIRDSDLGVNPGNDGSVIRVVMPQLTEERRKEYIKVARTKAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +S+RNIRR D + K+ K G+A ED S E + +T + +ID + K+ E++ Sbjct: 126 VSMRNIRRHAKDVVDKTVKDGQAGEDEGKSAEKRLDGLTKKYVDSIDELLKHKEAELL 183 >gi|104774221|ref|YP_619201.1| ribosome recycling factor [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|123077247|sp|Q1G9N9|RRF_LACDA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|103423302|emb|CAI98143.1| Ribosome recycling factor [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|325126006|gb|ADY85336.1| Ribosome recycling factor [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 185 Score = 137 bits (346), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 70/175 (40%), Positives = 109/175 (62%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K M +I + ++ T+R G + S+LD V VE YG PL Q+A +T+ EPR+L+++ Sbjct: 10 KRNMNKSIEVYQSNLATVRAGVANASLLDRVMVEYYGVPTPLVQMAGITIPEPRVLMITP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +DK + +E I S+LGL P +G V+R+ +P+ T ERR + K AE++KI+VR Sbjct: 70 YDKTSLNDIEHAILASDLGLTPANDGNVIRLIIPQLTGERRQEIAKEVGKLAEEAKIAVR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 N+R++ M LKK K G+ +ED LE ++QK+TD + K ID + K+KEI+ Sbjct: 130 NVRQEAMKALKKQEKDGEITEDEERRLEKEVQKVTDESTKKIDQMADNKRKEIIQ 184 >gi|119952923|ref|YP_945132.1| ribosome recycling factor [Borrelia turicatae 91E135] gi|254809494|sp|A1QYS0|RRF_BORT9 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|119861694|gb|AAX17462.1| ribosome recycling factor [Borrelia turicatae 91E135] Length = 184 Score = 137 bits (346), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 71/174 (40%), Positives = 110/174 (63%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 ++M + L+ + +LRTGR++ S+ D V V+ YG PL +VANV++ E R++V+ W Sbjct: 10 EKMSKVLLSLESEYKSLRTGRINSSLFDKVLVDYYGEKTPLTRVANVSIPEARLIVIQPW 69 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 DK +++ +E+ I S+L +NP +G VLRI VP T ERR +VK A AE+ K++ RN Sbjct: 70 DKSLLSKIEQAILSSDLSMNPSSDGAVLRIKVPVLTVERRKEIVKQAKKIAEEYKVAARN 129 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +R++ KK K + +ED + + +DIQ+ T+S IK ID F+ K KEIM Sbjct: 130 VRQELNSKAKKQEKDSQITEDDLRRILDDIQRDTNSYIKKIDEIFDLKTKEIME 183 >gi|34556750|ref|NP_906565.1| ribosome recycling factor [Wolinella succinogenes DSM 1740] gi|39932012|sp|Q7MAD8|RRF_WOLSU RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|34482464|emb|CAE09465.1| RIBOSOME RECYCLING FACTOR [Wolinella succinogenes] Length = 186 Score = 137 bits (346), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 69/184 (37%), Positives = 116/184 (63%), Gaps = 2/184 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N+V Q K+ M TI +K+D TLRTG+VS ++++ ++V+ YG+ PL+QV +V Sbjct: 3 LNEV--YQYTKEHMEKTIDAMKRDFATLRTGKVSTAIVEPIRVDYYGTPTPLSQVGSVIA 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + LV+S W+K ++ +E+ I E+N+G+NP +G V+++ P T E+R + K A A Sbjct: 61 SDATTLVISPWEKNLLKGIEKAIQEANIGVNPNNDGDVIKLFFPPMTSEQRKEIAKDAKA 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 EK+K++VRNIR++ D +KK K +ED +++QK TD +K ID + K+ Sbjct: 121 LGEKAKVAVRNIRKESNDKIKKLEKDKLITEDQSKKAHDEVQKYTDDYVKKIDDMVKSKE 180 Query: 181 KEIM 184 +EI+ Sbjct: 181 EEIL 184 >gi|303232806|ref|ZP_07319491.1| ribosome recycling factor [Atopobium vaginae PB189-T1-4] gi|302481292|gb|EFL44367.1| ribosome recycling factor [Atopobium vaginae PB189-T1-4] Length = 181 Score = 137 bits (346), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 72/186 (38%), Positives = 108/186 (58%), Gaps = 5/186 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M++ D K M IS LK + +RTGR +P +LD +KV+ YG P+ Q+A + V Sbjct: 1 MSEYTDF--AKSHMTRAISALKTNFSKVRTGRANPQVLDGIKVDYYGQPTPILQLAGIKV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EP +L V WDK + ++E+ I S+LG+ P +G +R+P P+ T++RRL LVK Sbjct: 59 PEPTVLAVEPWDKSSLKAIEKAIEASDLGITPSNDGVTIRLPFPKPTQQRRLELVKECKQ 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE +K+++RN RRD K+ + + SED V+ + IQKITD I +D + K Sbjct: 119 YAEDAKVAIRNARRDANG---KAERDEELSEDGVSREKKAIQKITDDFIAQVDELLKTKS 175 Query: 181 KEIMHF 186 E+M Sbjct: 176 AEVMEI 181 >gi|229817669|ref|ZP_04447951.1| hypothetical protein BIFANG_02940 [Bifidobacterium angulatum DSM 20098] gi|229785458|gb|EEP21572.1| hypothetical protein BIFANG_02940 [Bifidobacterium angulatum DSM 20098] Length = 184 Score = 137 bits (346), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 71/179 (39%), Positives = 108/179 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K +M T+ K++ +RTGR +P++L+ + V+ YG+ P+ VA++ V EPR L Sbjct: 5 VEQAKAQMAKTVENTKENFAGIRTGRANPALLNGIMVDYYGAPTPIKAVASIGVPEPRTL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +D +VE+ I S+LG++P +G V+R+ +PE TEERR VK+A AE K Sbjct: 65 SVTPFDASQAGAVEKAIRNSDLGVSPNRDGNVIRLTMPELTEERRKEYVKLAKGKAEDGK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRNIRR + + KS K G ED L D+ K+T S ID+ E K+KEIM Sbjct: 125 VAVRNIRRKTKETIDKSVKDGDMGEDEGDRLLKDLDKVTKSVTDEIDALLETKQKEIME 183 >gi|119946594|ref|YP_944274.1| ribosome recycling factor [Psychromonas ingrahamii 37] gi|166231213|sp|A1SYW0|RRF_PSYIN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|119865198|gb|ABM04675.1| ribosome recycling factor [Psychromonas ingrahamii 37] Length = 185 Score = 137 bits (346), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 72/175 (41%), Positives = 105/175 (60%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 + RM ++ + + +RTGR PS+LD + V YGS+ PL QV NV+ + R L V+V Sbjct: 10 QSRMDKSVEAFRSQLSKIRTGRAHPSLLDGIMVPYYGSNTPLRQVGNVSTEDARTLTVTV 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +D ++ +VE+ I S+LGLNP+ G V+RIP+P TEERR L+K+ AE S+I++R Sbjct: 70 FDASLIKAVEKAIMGSSLGLNPMSAGTVIRIPLPPLTEERRRDLIKIVRGEAENSRIAIR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 NIRRD + LK K SED E +QK T+ IK I+ K+ E++ Sbjct: 130 NIRRDANNDLKLLEKDKDISEDEQRVGEELVQKTTNDHIKQIEDLLVVKEAELLE 184 >gi|319760411|ref|YP_004124349.1| ribosome recycling factor [Candidatus Blochmannia vafer str. BVAF] gi|318039125|gb|ADV33675.1| ribosome recycling factor [Candidatus Blochmannia vafer str. BVAF] Length = 188 Score = 137 bits (346), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 71/187 (37%), Positives = 117/187 (62%), Gaps = 1/187 (0%) Query: 1 MNQVIDLQ-NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVT 59 +N++ ++Q ++K++M I K ++ + G VSP+ML+ + VE YGS +PL+Q+ N Sbjct: 2 INEICEIQADLKEQMKKCIDSFKINVNKIHVGHVSPNMLNFITVEYYGSVIPLSQLTNSV 61 Query: 60 VLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 V +PR L ++V+D M+ ++E+ I +NLG PI G V+RI +P TE+RR L+K+ Sbjct: 62 VEKPRTLAITVFDASMIKTIEKAILTANLGFTPIAHGNVIRITLPILTEDRRRTLIKMMR 121 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 +EKSKIS+RNIRR D +K K + + D +N+IQ +T+ + I+ +EK Sbjct: 122 IESEKSKISLRNIRRIANDKIKVFLKKKEINVDDEYHRQNEIQNLTNFWVNQINMILKEK 181 Query: 180 KKEIMHF 186 + E+M F Sbjct: 182 ELELMMF 188 >gi|315924376|ref|ZP_07920598.1| ribosome recycling factor [Pseudoramibacter alactolyticus ATCC 23263] gi|315622255|gb|EFV02214.1| ribosome recycling factor [Pseudoramibacter alactolyticus ATCC 23263] Length = 185 Score = 137 bits (346), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 67/178 (37%), Positives = 110/178 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q +++M + L + TLR GR + +LD V V+ YG+ +NQ+A V E R++ Sbjct: 6 MQRAEEKMNKALENLSGSLNTLRAGRANAHILDKVTVDYYGAPTAINQLATVAAPEARLI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V +D + ++E+ I ++LG NP +G+++R+ VP+ TEERR LVK+ Y E+ K Sbjct: 66 TVQPYDTTALPAIEKAILTADLGFNPSNDGKIIRLAVPQLTEERRKELVKLTKKYGEECK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++RNIRR LK ++K G SED + +N +QK+TD IK ID+ + K++EI+ Sbjct: 126 VAMRNIRRKSDQKLKTAQKDGDISEDEMHDGQNSVQKLTDKKIKEIDAVLKAKEEEIL 183 >gi|7404451|sp|P37706|RRFC_DAUCA RecName: Full=Ribosome-recycling factor, chloroplastic; Short=RRF; AltName: Full=Nuclear located protein D2; AltName: Full=Ribosome-releasing factor, chloroplastic; Flags: Precursor Length = 227 Score = 137 bits (346), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 69/177 (38%), Positives = 111/177 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +++K+RM TI +K ++RT R +P MLD +KVE YG+ L +A ++ + L+ Sbjct: 49 KSVKERMEKTIENVKASFNSIRTXRSNPDMLDKIKVEYYGTPTSLKSIAQISTPDSSSLL 108 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+ +DK + +E+ I S+LG+ P +G V+R+ +P+ T +RR L K+ AE+ K+ Sbjct: 109 VNPYDKSSLKDIEKAIVNSDLGITPNNDGDVIRLSIPQLTADRRKELSKIVAKQAEEGKV 168 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++RNIRRD + K K K SED V L +D+QK+ D IK +DS F++K+KE+M Sbjct: 169 ALRNIRRDAIKSYDKLEKEKKLSEDNVKDLSSDLQKVIDEYIKKVDSIFKQKEKELM 225 >gi|254283859|ref|ZP_04958827.1| ribosome recycling factor [gamma proteobacterium NOR51-B] gi|219680062|gb|EED36411.1| ribosome recycling factor [gamma proteobacterium NOR51-B] Length = 188 Score = 137 bits (346), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 73/182 (40%), Positives = 108/182 (59%), Gaps = 1/182 (0%) Query: 6 DLQ-NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D+Q + ++RM ++ L + +RTGR PS+LD +++E YG+ PL Q+AN+ V + R Sbjct: 7 DIQSDAEERMEKSLEALDHNFNKIRTGRAHPSLLDSIRIEYYGADTPLIQLANINVEDAR 66 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 L V +DK +E+ I S+LGLNP G V+RIP+P TEE R +K A + AE Sbjct: 67 TLTVVAFDKSTTPDIEKAIMRSDLGLNPSSAGDVIRIPMPMLTEETRRGYIKQARSEAES 126 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++SVRN RRD M LK+ K + SED E IQK+TD + I+ EK+ ++M Sbjct: 127 ARVSVRNARRDAMAMLKELEKEKEISEDEQRRGEEQIQKLTDGFVAKIEKKLSEKESDLM 186 Query: 185 HF 186 Sbjct: 187 EI 188 >gi|15616850|ref|NP_240063.1| ribosome recycling factor [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11134310|sp|P57328|RRF_BUCAI RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|25299706|pir||E84957 ribosome recycling factor [imported] - Buchnera sp. (strain APS) gi|10038914|dbj|BAB12949.1| ribosome recycling factor [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|311087130|gb|ADP67210.1| ribosome recycling factor [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087668|gb|ADP67747.1| ribosome recycling factor [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 185 Score = 137 bits (346), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 73/186 (39%), Positives = 116/186 (62%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +NQ ID++ ++RM I ++ ++TGR SP++L + +E +GS PL QV+N+ V Sbjct: 2 INQ-IDIKT-RERMEACIQTFHNNITNIKTGRASPTLLHNIYIEYFGSKTPLRQVSNIIV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + L ++V+D + + + + I SNL LNP+++G+ + IP+P TEERR L+KV Sbjct: 60 EDSHTLKINVFDDSITSLIRKSILNSNLDLNPVLQGKDIIIPIPRLTEERRKQLIKVIRG 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE S+I +RNIRRD D +K+ K SED + ++ IQ +T+ IK ID E+K+ Sbjct: 120 DAESSRIQIRNIRRDANDKVKRLLKDKIISEDNEHTSQSKIQIMTNEYIKKIDCILEKKE 179 Query: 181 KEIMHF 186 KE+M F Sbjct: 180 KELMKF 185 >gi|255020970|ref|ZP_05293025.1| Ribosome recycling factor [Acidithiobacillus caldus ATCC 51756] gi|254969575|gb|EET27082.1| Ribosome recycling factor [Acidithiobacillus caldus ATCC 51756] Length = 186 Score = 137 bits (346), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 65/178 (36%), Positives = 110/178 (61%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM +I LK ++ LRTGR S +LD V+V+ YGS PL+QVA+++V + R L+ Sbjct: 8 KDAEQRMKKSIEALKSELTRLRTGRASAGLLDHVEVDYYGSPTPLSQVASISVADARSLL 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+ W+K ++ +++ I ++ LGLNP+ +R+P+P +EERR +VK+ E +++ Sbjct: 68 VTPWEKPLIPKIDKAIRDAGLGLNPVAGSDNVRVPLPALSEERRKEMVKIVRQEGEGARV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++RNIRRD + +K K SED E + QK+TD + +D E K+ ++M Sbjct: 128 AIRNIRRDAIAQVKDLLKQKSISEDEGRRAEEEFQKLTDRFVDEVDGVVEAKESDLME 185 >gi|323456603|gb|EGB12470.1| hypothetical protein AURANDRAFT_58615 [Aureococcus anophagefferens] Length = 171 Score = 137 bits (346), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 73/171 (42%), Positives = 109/171 (63%), Gaps = 2/171 (1%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M +I L+ ++ TLRTGR SP +L V V+ YG+ PLNQ+A+V+V LVVS +DK Sbjct: 1 MDKSIGALRNNLGTLRTGRASPDILARVVVDYYGAETPLNQLASVSVSSGTQLVVSPYDK 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 + +VE I ++NLG+ P +G+++R+ VP TE+RR ++K A A E +K+++RNIR Sbjct: 61 SSLGAVESAIVDANLGMAPNNDGELIRLNVPALTEDRRKEILKQAKAVGEDAKVAIRNIR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 + +KK K SED+ N+IQK+TD IK++D K+KEIM Sbjct: 121 KGANSDVKKQGKD--LSEDVAKDANNEIQKLTDKLIKSVDEVVAAKEKEIM 169 >gi|152991633|ref|YP_001357354.1| ribosome recycling factor [Sulfurovum sp. NBC37-1] gi|226703269|sp|A6Q688|RRF_SULNB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|151423494|dbj|BAF70997.1| ribosome recycling factor Frr [Sulfurovum sp. NBC37-1] Length = 185 Score = 137 bits (346), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 64/178 (35%), Positives = 114/178 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+ M ++ LK+D +LRTG+V+ +++D +KV+ YG+ PLNQV +V + + Sbjct: 6 FEHTKENMDKSLEALKRDFASLRTGKVTTNIVDNIKVDYYGTPTPLNQVGSVIATDATTI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ W+K +++ +ER I E+N+G+NP +G +++ P T E+R +VK A A AE ++ Sbjct: 66 SITPWEKNLLSDIERAIQEANIGVNPNNDGDFIKLFFPPMTSEQRQEIVKQAKAMAENAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++RNIR+D + +KK K + SED ++IQKITD I +D F+ K+ +I+ Sbjct: 126 VAIRNIRKDANNKIKKLEKDKEISEDESKRAHDEIQKITDDHIGMVDELFKAKEADIL 183 >gi|189425767|ref|YP_001952944.1| ribosome recycling factor [Geobacter lovleyi SZ] gi|238692131|sp|B3E719|RRF_GEOLS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|189422026|gb|ACD96424.1| ribosome recycling factor [Geobacter lovleyi SZ] Length = 185 Score = 137 bits (345), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 70/180 (38%), Positives = 109/180 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + +K M ++ L+K+ +RTGR S S+LD VKV+ YG+ L+QVA + V EPR + Sbjct: 6 ITEMKAHMEKSVEDLRKEYQRIRTGRASTSLLDEVKVDYYGNPSSLSQVATLAVPEPRTI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ W+ +M+ +E+ I +NLGL P +G+++R+ +P TEERR +VK E K Sbjct: 66 TITPWESKMIGPIEKAILNANLGLTPGNDGKLIRLNLPPLTEERRKEIVKGMKKMDEDHK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRR +D LKK K +ED + E ++Q +TDS I +D K+KE+M Sbjct: 126 VAVRNIRRKAIDDLKKMEKDKSITEDELKKAEKEVQTVTDSIIAKLDEILAHKEKEVMEV 185 >gi|73662818|ref|YP_301599.1| ribosome recycling factor [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123642440|sp|Q49X44|RRF_STAS1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|72495333|dbj|BAE18654.1| ribosome recycling factor [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 184 Score = 137 bits (345), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 71/176 (40%), Positives = 118/176 (67%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K +M +I L +++ + GR + ++L+ V V+ YG+ P+ Q+A+++V E R+LV+S Sbjct: 9 KSKMQKSIDNLSRELANISAGRANSNLLNGVNVDYYGAPTPVQQLASISVPEARLLVISP 68 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +DK V ++E+ I+ +NLG+NP +G+V+RI VP TEERR LVK E +K++VR Sbjct: 69 YDKSSVGNIEKAINAANLGVNPSSDGEVIRISVPALTEERRKELVKDVKKIGEDAKVAVR 128 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 N+RRD D LKK +K+ +ED + + +D+QK+TD +IK ++ EEK+++IM Sbjct: 129 NVRRDSNDELKKQQKNSDITEDDLRTQTDDVQKLTDDSIKEVEKLLEEKEQDIMSV 184 >gi|213691943|ref|YP_002322529.1| ribosome recycling factor [Bifidobacterium longum subsp. infantis ATCC 15697] gi|254809493|sp|B7GQS1|RRF_BIFLI RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|213523404|gb|ACJ52151.1| ribosome recycling factor [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458050|dbj|BAJ68671.1| ribosome recycling factor [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 183 Score = 137 bits (345), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 69/179 (38%), Positives = 109/179 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + +++M T+ K++ +RTGR +P++L+ + V+ YG+ P+ VA++ V EPR L Sbjct: 4 IDQAREQMAKTVENTKENFSGIRTGRANPALLNGITVDYYGAPTPIKAVASIGVPEPRTL 63 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +D +VE+ + S+LG++P +G V+R+ +PE TEERR VK+A AE K Sbjct: 64 SVTPFDASQAGAVEKALRNSDLGVSPNRDGNVIRLTMPELTEERRKEYVKLAKGKAEDGK 123 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRNIRR + L K+ K G+ ED L D+ K+T S ID+ E K+KEIM Sbjct: 124 VAVRNIRRKTKEALDKAVKDGEMGEDEGDRLLKDLDKVTKSVTDEIDALLESKQKEIME 182 >gi|302335682|ref|YP_003800889.1| ribosome recycling factor [Olsenella uli DSM 7084] gi|301319522|gb|ADK68009.1| ribosome recycling factor [Olsenella uli DSM 7084] Length = 181 Score = 137 bits (345), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 72/186 (38%), Positives = 110/186 (59%), Gaps = 5/186 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+Q D + + M ++ L+ + +RTGR + +LD ++V+ YG P+ Q+A V V Sbjct: 1 MSQYSD--SARKHMDKCLNALRGNFARVRTGRANAHVLDDIRVDYYGQMTPITQLAGVKV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E MLVV WDK + S+E+ I S+LG+ P +G +R+P P+ TEERR LVK H Sbjct: 59 PEASMLVVEPWDKSALKSIEKAIESSDLGITPSNDGVSIRLPFPKPTEERRKELVKECHK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE++K+++RN RRD K+ +S + SED VA + IQK+TD + +D + K Sbjct: 119 YAEEAKVAIRNARRDANG---KAERSEELSEDEVAREKKGIQKVTDDYVAKVDQMLKAKT 175 Query: 181 KEIMHF 186 E+M Sbjct: 176 AEVMEI 181 >gi|283783270|ref|YP_003374024.1| ribosome recycling factor [Gardnerella vaginalis 409-05] gi|297243503|ref|ZP_06927435.1| ribosome recycling factor [Gardnerella vaginalis AMD] gi|298252794|ref|ZP_06976588.1| ribosome recycling factor [Gardnerella vaginalis 5-1] gi|283442171|gb|ADB14637.1| ribosome recycling factor [Gardnerella vaginalis 409-05] gi|296888548|gb|EFH27288.1| ribosome recycling factor [Gardnerella vaginalis AMD] gi|297533158|gb|EFH72042.1| ribosome recycling factor [Gardnerella vaginalis 5-1] Length = 184 Score = 137 bits (345), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 70/185 (37%), Positives = 116/185 (62%), Gaps = 2/185 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ +ID +++M ++ K++ M +RTGR +P++L+ + V+ YG+ P+ VA++ V Sbjct: 1 MSAIID--QAREQMNKSVEATKENFMGIRTGRANPALLNGIMVDYYGAPTPIKAVASIGV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPR L V+ +D +VE+ I +S+LG++P +G V+R+ +PE TEERR VK+A Sbjct: 59 PEPRTLSVTPFDASQANAVEKAIRDSDLGVSPNRDGNVIRVTMPELTEERRKEYVKLAKN 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE+ K++VRNIRR + + KS K G+ ED L+ ++ K+T ++D E K+ Sbjct: 119 KAEEGKVAVRNIRRKAKESIDKSVKDGELGEDEGDRLQKELDKVTKQVTDSLDVLLEGKQ 178 Query: 181 KEIMH 185 KEIM Sbjct: 179 KEIME 183 >gi|262372666|ref|ZP_06065945.1| ribosome recycling factor [Acinetobacter junii SH205] gi|262312691|gb|EEY93776.1| ribosome recycling factor [Acinetobacter junii SH205] Length = 184 Score = 137 bits (345), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 75/172 (43%), Positives = 107/172 (62%), Gaps = 1/172 (0%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM T+ L++ +RTGR PS+L+ V V YGS VPLNQVANV V + R L+V ++ Sbjct: 12 RMQKTLDSLEQGFAKVRTGRAHPSILNGVMVPYYGSDVPLNQVANVGVEDSRTLIVQPFE 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + MV+++++ I ES+LGLNPI +R+P+P TEE R + KVA AE +K+++RNI Sbjct: 72 RTMVSAIDKAIRESDLGLNPIT-ADSIRVPLPALTEETRRDMQKVARNEAENAKVAIRNI 130 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD + +K K + SED DIQKITD + +D K+ E+M Sbjct: 131 RRDVLGDIKALLKEKEISEDDERRAGEDIQKITDKYVAEVDKRLAAKEAELM 182 >gi|326382902|ref|ZP_08204592.1| ribosome recycling factor [Gordonia neofelifaecis NRRL B-59395] gi|326198492|gb|EGD55676.1| ribosome recycling factor [Gordonia neofelifaecis NRRL B-59395] Length = 185 Score = 137 bits (345), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 63/180 (35%), Positives = 109/180 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++M ++ L+ DM ++RTGR +P+M + V +E YG+ P+ QVA + EPR++ Sbjct: 6 LLDAEEKMEKAVAHLRDDMASIRTGRANPAMFNKVVIEYYGAMTPITQVAGINTPEPRLV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +++ + +E I S+LG+NP +G V+R+ VP+ TEERR L K A E +K Sbjct: 66 VIKPYEQSTMNDIETAIRNSDLGVNPTNDGTVIRVAVPQLTEERRKQLGKQARGKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RN+RR +D LK+ +K G A ED V E ++ T + +D + K+ E++ Sbjct: 126 VAIRNVRRKAVDELKRIQKDGDAGEDEVTRAEKELDTTTRTYTDAVDELVKNKEAELLEV 185 >gi|114331998|ref|YP_748220.1| ribosome recycling factor [Nitrosomonas eutropha C91] gi|122313298|sp|Q0AEH7|RRF_NITEC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|114309012|gb|ABI60255.1| ribosome recycling factor [Nitrosomonas eutropha C91] Length = 185 Score = 137 bits (345), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 66/172 (38%), Positives = 108/172 (62%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M ++ LK D +R+GR +LD + V+ YG+ P+ Q+ANVT+ + R + V WD Sbjct: 12 KMQKSLDALKVDFSKVRSGRPHTGLLDHITVDYYGTPTPIRQLANVTLADARTIGVIPWD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K+ +++E+ I +S++GLNP+ G+++R+P+P TEERR L K+ AE ++I++RNI Sbjct: 72 KKAFSAIEKAIRDSDMGLNPMTAGEMVRVPMPPLTEERRKDLTKIVRTEAETARIAMRNI 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD LK+ K +ED ++DIQK+TD I +D + K+ E+M Sbjct: 132 RRDANTQLKELLKDKLIAEDEDRRAQDDIQKLTDRYIAEVDKLLQAKEAELM 183 >gi|298712852|emb|CBJ33372.1| ribosome recycling factor [Ectocarpus siliculosus] Length = 251 Score = 137 bits (345), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 68/179 (37%), Positives = 110/179 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + + ++RM ++ ++ ++ TLRTGR +P +LD V VE YG+ PLNQVA+V L Sbjct: 72 MASAQERMDKSVESVRLNLETLRTGRANPKILDRVVVECYGAETPLNQVASVKTTSATAL 131 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V +D ++A + I E++LGL P +G V+R+ +P TE+RR L K A E+ K Sbjct: 132 LVESYDPTILADIAAAIQEADLGLTPNNDGTVIRLNMPPVTEDRRKELAKEAKGLGEEGK 191 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +++RNIRR+ +D +KK+ K+ +D ++ IQK+TD T K ID K+K+I+ Sbjct: 192 VAIRNIRREAVDTVKKAEKAKNLGKDQSKDAQDAIQKLTDKTTKTIDEKVAAKEKDILK 250 >gi|292492491|ref|YP_003527930.1| ribosome recycling factor [Nitrosococcus halophilus Nc4] gi|291581086|gb|ADE15543.1| ribosome recycling factor [Nitrosococcus halophilus Nc4] Length = 185 Score = 137 bits (345), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 77/172 (44%), Positives = 108/172 (62%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM ++ LK+ LR R S+LD + V YG++VPLNQVANV V + R L V+ W+ Sbjct: 12 RMQKSLEALKQAFAKLRANRAHTSLLDHITVSYYGTNVPLNQVANVAVEDARTLAVTPWE 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K+MV ++E+ I S LGLNP+ G V+RIP+P TEERR +V+V AE ++++VRNI Sbjct: 72 KQMVPAIEKAIRNSELGLNPVTAGMVIRIPLPPLTEERRREMVRVVRQEAEAARVAVRNI 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD +K+ K + SED E IQKITDS I +D K++++M Sbjct: 132 RRDSNQTIKELVKEKEISEDDQHRAEEAIQKITDSNIAKVDEILAAKERDLM 183 >gi|219681604|ref|YP_002467990.1| ribosome recycling factor [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471290|ref|ZP_05635289.1| ribosome recycling factor [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|254809497|sp|B8D931|RRF_BUCA5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|219624447|gb|ACL30602.1| ribosome recycling factor [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 185 Score = 137 bits (345), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 73/186 (39%), Positives = 116/186 (62%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +NQ ID++ ++RM I ++ ++TGR SP++L + +E +GS PL QV+N+ V Sbjct: 2 INQ-IDIKT-RERMEACIQTFHNNISNIKTGRASPTLLHNIYIEYFGSKTPLRQVSNIIV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + L ++V+D + + + + I SNL LNP+++G+ + IP+P TEERR L+KV Sbjct: 60 EDSHTLKINVFDDSITSLIRKSILNSNLDLNPVLQGKDIIIPIPRLTEERRKQLIKVIRG 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE S+I +RNIRRD D +K+ K SED + ++ IQ +T+ IK ID E+K+ Sbjct: 120 DAESSRIQIRNIRRDANDKVKRLLKDKIISEDNEHTSQSKIQIMTNEYIKKIDCILEKKE 179 Query: 181 KEIMHF 186 KE+M F Sbjct: 180 KELMKF 185 >gi|226366024|ref|YP_002783807.1| ribosome recycling factor [Rhodococcus opacus B4] gi|254809526|sp|C1B2U5|RRF_RHOOB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226244514|dbj|BAH54862.1| ribosome recycling factor [Rhodococcus opacus B4] Length = 185 Score = 137 bits (345), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 63/175 (36%), Positives = 109/175 (62%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 +++M ++ K D+ ++RTGR +P M + + ++ YG+ P+ Q+A++ V E R++VV Sbjct: 10 EEKMEKAVTVAKDDLGSIRTGRANPGMFNRIGIDYYGAFTPITQLASINVPEARLVVVKP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 ++ + ++E I S+LG+NP +G ++RI VP+ TEERR LVK A + E +K+SVR Sbjct: 70 YEASQLNAIETAIRNSDLGVNPSNDGNLIRISVPQLTEERRRELVKQAKSKGEDAKVSVR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 N+RR MD L + +K G+A ED V E ++ K T + +D + K+ E++ Sbjct: 130 NVRRKAMDELSRIQKDGEAGEDEVGRAEKELDKTTARYVAQVDELVKHKEAELLE 184 >gi|294788085|ref|ZP_06753329.1| ribosome recycling factor [Simonsiella muelleri ATCC 29453] gi|294484378|gb|EFG32061.1| ribosome recycling factor [Simonsiella muelleri ATCC 29453] Length = 185 Score = 137 bits (345), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 70/182 (38%), Positives = 115/182 (63%), Gaps = 1/182 (0%) Query: 4 VIDLQ-NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLE 62 + D+Q + +++M ++ L +++ +RTGR +LD V+VE +G+ VP+ Q A++T+++ Sbjct: 2 ISDIQKSTENKMQRSVEVLGENLAKVRTGRAHTGLLDQVEVEYWGNMVPVGQAASLTLID 61 Query: 63 PRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 R + V ++ M + +E+ I +SNLGLNP G ++R+P+P TEERR L+KV A Sbjct: 62 ARTIGVKPFESNMASKIEKAIRDSNLGLNPSSVGDLIRVPMPMLTEERRKDLIKVVRGEA 121 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 E ++SVRN+RRD DH+KK K + SED E +QK+TD I ID K+++ Sbjct: 122 EDGRVSVRNVRRDANDHIKKLLKDKEISEDDARRGEEAVQKLTDKFIAEIDKMLASKEED 181 Query: 183 IM 184 +M Sbjct: 182 LM 183 >gi|21672509|ref|NP_660576.1| ribosome recycling factor [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25009151|sp|Q8K9S8|RRF_BUCAP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|21623130|gb|AAM67787.1| ribosome recycling factor [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 185 Score = 137 bits (345), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 71/175 (40%), Positives = 107/175 (61%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 ++M I+ + + +RTGR SP +L+ + VE +GS VPL Q++NV V L ++++ Sbjct: 11 EKMKVCINNFQIQVNNVRTGRASPELLNSIYVEYFGSKVPLRQISNVVVENYHTLKINIF 70 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 D + +++ I SNL LNPI+ G+ + +P+P TEERR L+KV AE ++I +RN Sbjct: 71 DDSSTSLIKKAILNSNLDLNPILYGKDIIVPIPGLTEERRTHLIKVIRNNAENARIYIRN 130 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 IRRD D +K KS SED + +N IQ +TD IK ID EK+K++M F Sbjct: 131 IRRDANDKIKNYLKSKIISEDNEHAAQNKIQTMTDDYIKKIDKILSEKEKDLMKF 185 >gi|218439649|ref|YP_002377978.1| ribosome recycling factor [Cyanothece sp. PCC 7424] gi|226703257|sp|B7K7R4|RRF_CYAP7 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|218172377|gb|ACK71110.1| ribosome recycling factor [Cyanothece sp. PCC 7424] Length = 182 Score = 137 bits (344), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 66/177 (37%), Positives = 110/177 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++D M TI ++ T+RTGR + ++LD V V+ YG+ PL +AN+T + + Sbjct: 3 LSEVQDNMQKTIESTQRSFNTIRTGRANSALLDRVMVDYYGTETPLKSLANITTPDATTI 62 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + +D+ + +E+ I S++GL P +GQ++R+ +P T ERR LVK+A AE+ K Sbjct: 63 AIQPYDRGSMGQIEKAIQLSDIGLTPNNDGQMIRLNIPPLTTERRKELVKLAGKLAEEGK 122 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +++RNIRRD +D ++K K+ + SED +L+++IQK+TD ID K+K+I Sbjct: 123 VAIRNIRRDAIDSVRKQEKNHELSEDESRNLQDEIQKVTDEYTAKIDELLAAKEKDI 179 >gi|302879001|ref|YP_003847565.1| ribosome recycling factor [Gallionella capsiferriformans ES-2] gi|302581790|gb|ADL55801.1| ribosome recycling factor [Gallionella capsiferriformans ES-2] Length = 185 Score = 137 bits (344), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 70/172 (40%), Positives = 108/172 (62%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM ++ L+ D+ +RTGR +LD V V+ YGS + QVAN+T+++ R + V ++ Sbjct: 12 RMRKSLDALRADLGKVRTGRAHTGLLDHVMVDYYGSPTLVTQVANITLVDARTIGVQPYE 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K MV VER I +++LGLNP G+++R+P+P TEERR ++K+ + E +KI+VRNI Sbjct: 72 KSMVGKVERAIRDADLGLNPATNGELIRVPMPMLTEERRRDMIKLVKSEGEDAKIAVRNI 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD LK K + SED +++DIQK+TD + ID K+ ++M Sbjct: 132 RRDANGSLKDLLKKKEISEDDERRVQDDIQKLTDRFVSEIDQMLAAKEVDLM 183 >gi|308233714|ref|ZP_07664451.1| ribosome recycling factor [Atopobium vaginae DSM 15829] gi|328944064|ref|ZP_08241529.1| ribosome recycling factor [Atopobium vaginae DSM 15829] gi|327492033|gb|EGF23807.1| ribosome recycling factor [Atopobium vaginae DSM 15829] Length = 181 Score = 137 bits (344), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 69/173 (39%), Positives = 103/173 (59%), Gaps = 3/173 (1%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M I LK + +RTGR +P +LD ++V+ YG P+ Q+A + V EP MLVV WDK Sbjct: 12 MNKCIDALKNNFSKVRTGRANPQVLDGIRVDYYGQPTPIVQLAGIKVPEPSMLVVEPWDK 71 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 + ++E+ I S+LG+ P +G +R+P P+ TEERR LVK YAE +K++VRN R Sbjct: 72 SSLKAIEKAIESSDLGITPSNDGTSIRLPFPKPTEERRRELVKECKQYAEDAKVAVRNAR 131 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RD + K+ + + +ED V + IQK+TD + ID + K +E+M Sbjct: 132 RDANN---KAERDEELNEDDVNREKKAIQKLTDEFVAKIDEMLKTKSQEVMEI 181 >gi|296171523|ref|ZP_06852787.1| ribosome recycling factor [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894085|gb|EFG73846.1| ribosome recycling factor [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 185 Score = 137 bits (344), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 64/179 (35%), Positives = 109/179 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++M +S + D+ T+RTGR +P M + ++ YG+ P+ Q+A++ V E R++ Sbjct: 6 LFDAEEKMEKAVSVARDDLSTIRTGRANPGMFSRIVIDYYGATTPITQLASINVPEARLV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ ++ + ++E I S+LG+NP +G ++R+ VP+ TEERR LVK A + E ++ Sbjct: 66 VIKPYEASQLGAIENAIRNSDLGVNPTNDGTLIRVAVPQLTEERRRELVKQAKSKGEDAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +SVRNIRR M+ L + RK G+A ED V E ++ K T ID + K+ E++ Sbjct: 126 VSVRNIRRKAMEELHRIRKDGEAGEDEVGRAEKELDKATHQYTAQIDELVKHKEGELLE 184 >gi|291456894|ref|ZP_06596284.1| ribosome recycling factor [Bifidobacterium breve DSM 20213] gi|291382171|gb|EFE89689.1| ribosome recycling factor [Bifidobacterium breve DSM 20213] Length = 183 Score = 137 bits (344), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 70/179 (39%), Positives = 110/179 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + K++M T+ K++ +RTGR +P++L+ + V+ YG+ P+ VA++ V EPR L Sbjct: 4 IDQAKEQMAKTVENTKENFAGIRTGRANPALLNGIVVDYYGAPTPIKAVASIGVPEPRTL 63 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +D A+VE+ I S+LG++P +G V+R+ +PE TE+RR VK+A + AE K Sbjct: 64 SVTPFDASQAAAVEKAIRNSDLGVSPNRDGNVIRLTMPELTEDRRKEYVKLAKSKAEDGK 123 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRNIRR + + KS K G ED L D+ K+T S ID+ + K+KEIM Sbjct: 124 VAVRNIRRKTKETIDKSVKDGDMGEDEGDRLLKDLDKVTKSVTDEIDALLDTKQKEIME 182 >gi|219682161|ref|YP_002468545.1| ribosome recycling factor [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|254809498|sp|B8D7D5|RRF_BUCAT RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|219621894|gb|ACL30050.1| ribosome recycling factor [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311085975|gb|ADP66057.1| ribosome recycling factor [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086549|gb|ADP66630.1| ribosome recycling factor [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 185 Score = 137 bits (344), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 73/186 (39%), Positives = 116/186 (62%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +NQ ID++ ++RM I ++ ++TGR SP++L + +E +GS PL QV+N+ V Sbjct: 2 INQ-IDIKT-RERMEACIQTFHNNINNIKTGRASPTLLHNIYIEYFGSKTPLRQVSNIIV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + L ++V+D + + + + I SNL LNP+++G+ + IP+P TEERR L+KV Sbjct: 60 EDSHTLKINVFDDSITSLIRKSILNSNLDLNPVLQGKDIIIPIPRLTEERRKQLIKVIRG 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE S+I +RNIRRD D +K+ K SED + ++ IQ +T+ IK ID E+K+ Sbjct: 120 DAESSRIQIRNIRRDANDKVKRLLKDKIISEDNEHTSQSKIQIMTNEYIKKIDCILEKKE 179 Query: 181 KEIMHF 186 KE+M F Sbjct: 180 KELMKF 185 >gi|284051585|ref|ZP_06381795.1| ribosome recycling factor [Arthrospira platensis str. Paraca] gi|291566938|dbj|BAI89210.1| ribosome recycling factor [Arthrospira platensis NIES-39] Length = 182 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 66/178 (37%), Positives = 109/178 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++++ M + + T+RTGR + S+LD + VE YGS PL +A+++ + + Sbjct: 3 LADVENLMKKALESTGRSFNTIRTGRANASLLDRITVEYYGSPTPLKSLASISTPDASTI 62 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + +D+ + ++E+ I S++GL P +G V+R+ +P TE RR VK+A YAE+ + Sbjct: 63 TIQPFDRNSLNNIEKAISMSDVGLTPNNDGSVVRLNIPPLTEARRQEFVKLAGKYAEEGR 122 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +SVRN+RRD +D ++K KSG SED L++ IQK+TD +D E K+K+IM Sbjct: 123 VSVRNVRRDAIDSVRKQEKSGDISEDESRDLQDQIQKLTDKYTAKVDELLEAKEKDIM 180 >gi|159901469|ref|YP_001547716.1| ribosome recycling factor [Herpetosiphon aurantiacus ATCC 23779] gi|159894508|gb|ABX07588.1| ribosome recycling factor [Herpetosiphon aurantiacus ATCC 23779] Length = 192 Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 64/179 (35%), Positives = 114/179 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ + +M +I L+ + +RTGR SP++++ +KVE YGS +PLNQ+AN+ E RM+ Sbjct: 13 LRDAESKMKKSIDSLRHTLGAVRTGRASPALVEDLKVEYYGSEMPLNQLANIATPESRMI 72 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + +D+ + ++E+ I S LG+NP +G+V+R+ +P+ T+ERR LVK A E K Sbjct: 73 TIQPYDQGAIKAIEKAIQNSELGINPSNDGRVIRLAIPQLTQERRKELVKQVKAKVEDGK 132 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +++RN+RR+ D ++K ++ SED + ++QK+TD K +++ K+ E+M Sbjct: 133 VAIRNVRREAQDAIRKLQQDKAISEDDERRGQEELQKLTDRFQKEVETIGTTKEAEVME 191 >gi|257455346|ref|ZP_05620581.1| ribosome recycling factor [Enhydrobacter aerosaccus SK60] gi|257447308|gb|EEV22316.1| ribosome recycling factor [Enhydrobacter aerosaccus SK60] Length = 184 Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 75/174 (43%), Positives = 107/174 (61%), Gaps = 1/174 (0%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 +D+M I L+ LRTGR P +L V V YGS +PLNQVA++ V + R L+V Sbjct: 10 EDKMKKAIEALENAFSKLRTGRAHPGILQGVMVSYYGSEMPLNQVASINVEDSRTLLVQP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +D+ MV +V++ I ES+LGLNP+ +V+R+P+P TEE R + K+A AE+ ++SVR Sbjct: 70 FDRSMVQAVDKAIRESDLGLNPM-SAEVIRVPLPALTEETRKDMQKLARHEAEERRVSVR 128 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 N RRD + LK K + SED +DIQK+TD I +ID K+ E+M Sbjct: 129 NARRDANNALKALVKDKQISEDDERRANDDIQKMTDKYIDSIDKMLSSKEAELM 182 >gi|224283164|ref|ZP_03646486.1| ribosome recycling factor [Bifidobacterium bifidum NCIMB 41171] gi|310287530|ref|YP_003938788.1| ribosome recycling factor RRF [Bifidobacterium bifidum S17] gi|311064443|ref|YP_003971168.1| ribosome recycling factor Rrf [Bifidobacterium bifidum PRL2010] gi|313140313|ref|ZP_07802506.1| ribosome recycling factor [Bifidobacterium bifidum NCIMB 41171] gi|309251466|gb|ADO53214.1| ribosome recycling factor RRF [Bifidobacterium bifidum S17] gi|310866762|gb|ADP36131.1| Rrf Ribosome Recycling Factor [Bifidobacterium bifidum PRL2010] gi|313132823|gb|EFR50440.1| ribosome recycling factor [Bifidobacterium bifidum NCIMB 41171] Length = 184 Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 69/179 (38%), Positives = 111/179 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K++M ++ K++ +RTGR +P++L+ + V+ YG+ PL VA++ V EPR L Sbjct: 5 VEQAKEQMNKSVENTKENFAGIRTGRANPALLNGIVVDYYGAPTPLKAVASIGVPEPRTL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +D + VE+ + +S+LG+NP +G V+RI +PE T ERR VK+A + AE K Sbjct: 65 SVTPFDVSQASKVEKALRDSDLGVNPNRDGNVIRITMPELTSERRKEYVKLAKSKAEDGK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRNIRR + + KS K G+ ED L ++ K+T +D+ FE K+KEIM Sbjct: 125 VAVRNIRRKAKETIDKSVKDGEMGEDEGDRLLKELDKVTKQVTDQLDALFETKQKEIME 183 >gi|332291336|ref|YP_004429945.1| ribosome recycling factor [Krokinobacter diaphorus 4H-3-7-5] gi|332169422|gb|AEE18677.1| ribosome recycling factor [Krokinobacter diaphorus 4H-3-7-5] Length = 185 Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 77/174 (44%), Positives = 107/174 (61%), Gaps = 3/174 (1%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K+ M D I L K ++T+R G+ SP+ML + V YGS PL+QVANV + R + V Sbjct: 13 KEAMDDAIVHLAKRLLTIRAGKASPAMLQGLMVNYYGSPTPLSQVANVNTPDGRTITVQP 72 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 W+K ++ +E+ I +NLG NP+ G+ + I VP TEERR LVK A A AE SK+ VR Sbjct: 73 WEKSLMQEIEKAIINANLGFNPMNNGENIIINVPPLTEERRKDLVKQARAEAEDSKVGVR 132 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 N R++ + +K K AS+D A+ E DIQK+TD IK I+ +K+ EIM Sbjct: 133 NDRKNANNDIK---KVDDASDDEKANAEVDIQKLTDIHIKKIEDVLSKKEAEIM 183 >gi|160880757|ref|YP_001559725.1| ribosome recycling factor [Clostridium phytofermentans ISDg] gi|190360239|sp|A9KMX5|RRF_CLOPH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|160429423|gb|ABX42986.1| ribosome recycling factor [Clostridium phytofermentans ISDg] Length = 184 Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 70/172 (40%), Positives = 112/172 (65%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M ++ LK++ + +R GR +P +LD ++V+ YG+ + VANV+V E R++ + W+ Sbjct: 11 KMQKSLDSLKEEYVGIRAGRANPHLLDKLRVDYYGTPSAIQAVANVSVPEARVIQIQPWE 70 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 +++ +E+ I S+LGL P +G+V+R+ PE TEERR LVK AE +K++VRN+ Sbjct: 71 AKLIKEIEKAIIASDLGLTPSNDGKVIRLVFPELTEERRKDLVKDVKKKAENTKVAVRNV 130 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD D +KK K+ + SED +E++IQKITD I +D E+K KEI+ Sbjct: 131 RRDANDAIKKLAKANEISEDEQKQIEDEIQKITDKFITEVDKVMEDKSKEIL 182 >gi|251771482|gb|EES52059.1| ribosome recycling factor [Leptospirillum ferrodiazotrophum] Length = 184 Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 64/179 (35%), Positives = 118/179 (65%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 DL+ +M + +K++ TLRTGR S ++++ ++++ YG+ V L++VA + +++ RM Sbjct: 4 DLKGYGVKMDQAVEHFRKEISTLRTGRPSLALVEHIRLDYYGNQVSLDKVAALNIVDNRM 63 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 + ++ W+ ++++ +E+ I +NLG+ P +G+ +R+ VP TEERR LVK+ AE++ Sbjct: 64 ITITPWETKLISDIEKAIMGANLGMTPQNDGKCVRLVVPPMTEERRKELVKILKKMAEEA 123 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 K+S+RNIRRD + LKK K G +ED V L+ D+QK+ D ++ ++K++EI+ Sbjct: 124 KVSLRNIRRDANEDLKKKSKDGLITEDRVKRLQEDVQKMVDGASSKVEEHAKKKEQEIL 182 >gi|256827506|ref|YP_003151465.1| ribosome recycling factor [Cryptobacterium curtum DSM 15641] gi|256583649|gb|ACU94783.1| ribosome recycling factor [Cryptobacterium curtum DSM 15641] Length = 186 Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 68/176 (38%), Positives = 107/176 (60%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 ++RM + L + +RTGR + +LD ++V+ YG P+NQ+A + + MLV+ Sbjct: 11 EERMEKAVDSLGEAFSNVRTGRANAMVLDRIRVDYYGVPTPINQMAAIKTPDAHMLVIEP 70 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 WDK + ++E ++ SNLGL P +G ++R+ P TEERR LVK AYAE+++I+VR Sbjct: 71 WDKGTLGAIEHALNNSNLGLTPTNDGNLIRLSFPTLTEERRRELVKQCKAYAEEARIAVR 130 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 N RRD ++K+ K+ ED E DIQK+TDS I ++ F++K+ E+M Sbjct: 131 NARRDANSAVEKAVKNDGLPEDEQRRSEADIQKLTDSYIAKVEESFKKKEAEVMEI 186 >gi|150024539|ref|YP_001295365.1| ribosome recycling factor [Flavobacterium psychrophilum JIP02/86] gi|190360243|sp|A6GWS4|RRF_FLAPJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|149771080|emb|CAL42547.1| Ribosome recycling factor [Flavobacterium psychrophilum JIP02/86] Length = 187 Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 76/186 (40%), Positives = 112/186 (60%), Gaps = 3/186 (1%) Query: 1 MNQVID--LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 M + ID L + K+ M +I+ L+K+ + +R G+ SP+ML V V+ YGS PL+QVA + Sbjct: 1 MTEEIDFILDSTKESMEGSIAHLEKEFLNIRAGKASPAMLGSVFVDYYGSATPLSQVAKI 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 +V + R + + ++K M+ +E+ I +N+G NP+ G V+ I VP TEERR L K A Sbjct: 61 SVPDARTITLQPFEKNMLQVIEKAIMIANIGFNPMNNGDVIIISVPPLTEERRRELAKQA 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 AE +KI VRN+R+D +KK K G SED E +QK+TDS I+ +D Sbjct: 121 KTEAEDAKIGVRNVRKDSNSDIKKLEKEG-TSEDACKIAEESVQKLTDSFIRKVDELLVV 179 Query: 179 KKKEIM 184 K+ EIM Sbjct: 180 KEAEIM 185 >gi|307637928|gb|ADN80378.1| Ribosome recycling factor [Helicobacter pylori 908] gi|325996531|gb|ADZ51936.1| Ribosome recycling factor [Helicobacter pylori 2018] gi|325998120|gb|ADZ50328.1| Ribosome recycling factor [Helicobacter pylori 2017] Length = 185 Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 69/174 (39%), Positives = 108/174 (62%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 KD M ++ L +D TLR+ +VS ++LD +KV+ YG+ PLNQV +V L+ L +S Sbjct: 10 KDLMQKSVQALNRDFSTLRSAKVSVNILDHIKVDYYGTPTPLNQVGSVMSLDATTLQISP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 W+K ++ +ER I E+N+G+NP +G+ +++ P T E+R + K A A EK+K++VR Sbjct: 70 WEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTSEQRKLIAKDAKAMGEKAKVAVR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 NIR+D + +KK K + SED + IQKITD I+ ID + K+ I+ Sbjct: 130 NIRQDANNQVKKLEKDKEISEDESKKAQEQIQKITDEAIRKIDESVKNKEDAIL 183 >gi|119505669|ref|ZP_01627739.1| ribosome recycling factor [marine gamma proteobacterium HTCC2080] gi|119458481|gb|EAW39586.1| ribosome recycling factor [marine gamma proteobacterium HTCC2080] Length = 185 Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 70/174 (40%), Positives = 104/174 (59%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM + L +RTGR PS+LD ++ E YG+ PLNQ+AN+TV + R L VS +D Sbjct: 12 RMVKALDALGHHFNKIRTGRAHPSLLDGIRAEYYGALTPLNQLANITVEDARTLAVSAFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K M ++E+ I +S+LGLNP G V+RIP+P TEE R +K A A AE ++S+R+ Sbjct: 72 KSMTPTIEKAIMKSDLGLNPATAGDVMRIPMPMLTEETRRGFIKQAKAEAEAGRVSIRSA 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD LK+ K + SED ++ IQK+TD+ + ++ K+ ++M Sbjct: 132 RRDANGMLKELLKDKEISEDDERRAQDVIQKLTDNFVAKVEEALAAKETDLMEI 185 >gi|262370222|ref|ZP_06063548.1| ribosome releasing factor [Acinetobacter johnsonii SH046] gi|262314564|gb|EEY95605.1| ribosome releasing factor [Acinetobacter johnsonii SH046] Length = 184 Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 75/177 (42%), Positives = 110/177 (62%), Gaps = 1/177 (0%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ +DRM ++ L+ +RTGR PS+L+ V V YGS VPLNQVANV V + R L+ Sbjct: 7 KDAEDRMNKSLDSLEHGFAKVRTGRAHPSILNGVMVPYYGSDVPLNQVANVGVEDSRTLL 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +++ MVA++++ I ES+LGLNPI +R+P+ TEE R + KVA AE +K+ Sbjct: 67 IQPFERTMVAAIDKAIRESDLGLNPIT-ADAIRVPMAALTEETRRDMQKVARNEAENAKV 125 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +VRNIRRD + +K K + SED +DIQKITD + ID K+ E++ Sbjct: 126 AVRNIRRDVLGDIKALLKEKEISEDDERRASDDIQKITDKFVAEIDKRLANKEAELL 182 >gi|118472629|ref|YP_886878.1| ribosome recycling factor [Mycobacterium smegmatis str. MC2 155] gi|166230801|sp|A0QVE0|RRF_MYCS2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|118173916|gb|ABK74812.1| ribosome recycling factor [Mycobacterium smegmatis str. MC2 155] Length = 185 Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 63/179 (35%), Positives = 112/179 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++M +S + ++ ++RTGR +P M + + ++ YGS P+ Q+A++ V E R++ Sbjct: 6 LFDAEEKMEKAVSVARDELGSIRTGRANPGMFNRINIDYYGSMTPITQLASINVPEARLV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ ++ + ++E I S+LG+NP +G ++R+ +P+ TEERR LVK A + E +K Sbjct: 66 VIKPYEASQLRAIEDAIRNSDLGVNPSNDGNIIRVAIPQLTEERRRELVKQAKSKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +SVRNIRR M+ L + +K G+A ED V+ E D+ K T + ID + K+ E++ Sbjct: 126 VSVRNIRRKAMEELSRIKKDGEAGEDEVSRAEKDLDKSTHTYTAQIDELVKHKESELLE 184 >gi|203284046|ref|YP_002221786.1| ribosome releasing factor [Borrelia duttonii Ly] gi|203287586|ref|YP_002222601.1| ribosome releasing factor [Borrelia recurrentis A1] gi|226749923|sp|B5RLJ5|RRF_BORDL RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226749924|sp|B5RQU6|RRF_BORRA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|201083489|gb|ACH93080.1| ribosome releasing factor [Borrelia duttonii Ly] gi|201084806|gb|ACH94380.1| ribosome releasing factor [Borrelia recurrentis A1] Length = 184 Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 72/176 (40%), Positives = 110/176 (62%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 + ++MG + L+ + +LRTGRV+ ++ D V V+ YG PL +VAN++V E R++V+ Sbjct: 8 LDEKMGRVVLSLESEYKSLRTGRVNSALFDKVFVDYYGEKTPLTRVANISVPEARLIVIQ 67 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 WD+ +++ +E+ I S+L +NP +G VLRI VP T ERR +VK A AE KI+ Sbjct: 68 PWDRSLLSKIEQAILNSDLSMNPSSDGSVLRIKVPVLTIERRKEIVKQAKKIAEDHKIAT 127 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 RNIR + + KK K + +ED + + +DIQ+ T+ IK ID F+ K KEIM Sbjct: 128 RNIRHELNNKAKKQEKDSQITEDDLRRILDDIQRDTNFYIKKIDGIFDLKAKEIME 183 >gi|120403212|ref|YP_953041.1| ribosome recycling factor [Mycobacterium vanbaalenii PYR-1] gi|166230806|sp|A1T785|RRF_MYCVP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|119956030|gb|ABM13035.1| ribosome recycling factor [Mycobacterium vanbaalenii PYR-1] Length = 185 Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 65/179 (36%), Positives = 108/179 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++M ++ + D+ ++RTGR +P M + + V+ YG+ P+ Q++++ V E RM+ Sbjct: 6 LFDAEEKMEKAVAVARDDLASIRTGRANPGMFNRIHVDYYGAVTPITQLSSINVPEARMV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ ++ + +E I S+LG+NP +G V+R+ +P+ TEERR LVK A E +K Sbjct: 66 VIKPYEASQLRPIEDAIRNSDLGVNPTNDGNVIRVSIPQLTEERRRDLVKQAKGKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +SVRNIRR M+ L + +K G A ED VA E D+ K T ID + K+ E++ Sbjct: 126 VSVRNIRRKAMEELTRIKKDGDAGEDDVARAEKDLDKTTQQYTHQIDELVKHKEGELLE 184 >gi|293609255|ref|ZP_06691557.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827707|gb|EFF86070.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325122521|gb|ADY82044.1| ribosome releasing factor [Acinetobacter calcoaceticus PHEA-2] Length = 184 Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 74/172 (43%), Positives = 108/172 (62%), Gaps = 1/172 (0%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM T+ L+ +RTGR PS+L+ V V YGS VPLNQVANV V + R L+V ++ Sbjct: 12 RMLKTLESLELGFAKVRTGRAHPSILNGVMVPYYGSDVPLNQVANVGVEDSRTLLVQPFE 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + MV+++++ I ES+LGLNPI +R+P+P TEE R + K+A + AE +K+++RNI Sbjct: 72 RTMVSAIDKAIRESDLGLNPIT-ADAIRVPLPALTEETRRDMQKIARSEAENAKVAIRNI 130 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD + +K K + SED +DIQKITD + +D K+ E+M Sbjct: 131 RRDVLGDIKALLKEKEISEDDERRAGDDIQKITDKYVAEVDKRLAAKEAELM 182 >gi|219362787|ref|NP_001137010.1| hypothetical protein LOC100217177 [Zea mays] gi|194697972|gb|ACF83070.1| unknown [Zea mays] gi|223972995|gb|ACN30685.1| unknown [Zea mays] Length = 266 Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 69/176 (39%), Positives = 109/176 (61%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K++M I ++ + T+RTGR SP+MLD ++VE YG+ V L +A ++ + L++ Sbjct: 91 KEKMEKAIETVQTNFNTVRTGRASPAMLDRIEVEYYGTPVNLKSIAQISTPDATSLLIQP 150 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +DK + +E+ I +NLG+ P +G+V+R+ VP T +RR L K AE K+++R Sbjct: 151 YDKSSLKLIEKTIVAANLGVTPSNDGEVIRVTVPPLTSDRRKELAKTVAKLAEDGKVAIR 210 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 NIRRD + K +K K SED V L D+QK+TD +KNIDS ++K++E+M Sbjct: 211 NIRRDAIKAYDKLQKEKKLSEDNVKDLSADLQKVTDEYMKNIDSIQKQKEQELMKI 266 >gi|262279362|ref|ZP_06057147.1| ribosome releasing factor [Acinetobacter calcoaceticus RUH2202] gi|262259713|gb|EEY78446.1| ribosome releasing factor [Acinetobacter calcoaceticus RUH2202] Length = 184 Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 75/172 (43%), Positives = 107/172 (62%), Gaps = 1/172 (0%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM T+ L+ +RTGR PS+L+ V V YGS VPLNQVANV + + R LVV ++ Sbjct: 12 RMLKTLESLELGFAKVRTGRAHPSILNGVMVPYYGSDVPLNQVANVGIEDSRTLVVQPFE 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + MV+++++ I ES+LGLNPI +R+P+P TEE R + KVA AE +K+++RNI Sbjct: 72 RTMVSAIDKAIRESDLGLNPIT-ADAIRVPLPALTEETRRDMQKVARNEAENAKVAIRNI 130 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD + +K K + SED +DIQKITD + +D K+ E+M Sbjct: 131 RRDVLGDIKALLKEKEISEDDERRAGDDIQKITDKYVAEVDKRLAAKEAELM 182 >gi|81428873|ref|YP_395873.1| ribosome recycling factor (ribosome releasing factor) (RRF) [Lactobacillus sakei subsp. sakei 23K] gi|123564051|sp|Q38W67|RRF_LACSS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|78610515|emb|CAI55566.1| Ribosome recycling factor (ribosome releasing factor) (RRF) [Lactobacillus sakei subsp. sakei 23K] Length = 185 Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 65/177 (36%), Positives = 115/177 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ K+ M + L++ + +R GR + S+++ V VE YG+ PLNQ+A +T+ E R+L Sbjct: 6 LEQAKENMEKAEASLRRTLGQIRAGRANASLVNRVNVEYYGAMTPLNQIAAITIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK + +E+ ++ +++G++P +G V+R+ +P+ T ERR + K AE +K Sbjct: 66 LITPYDKGALEDIEKALYTADIGISPANDGSVIRLVIPQLTGERRKEIAKEVGKEAELAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 + VRN RRD MD+LKK+ K+ + SED + LE +Q +T+ K ID+ ++K+KEI Sbjct: 126 VVVRNARRDAMDNLKKAEKASEISEDEMHDLEEQVQNLTNEATKKIDAISKDKEKEI 182 >gi|329961847|ref|ZP_08299861.1| ribosome recycling factor [Bacteroides fluxus YIT 12057] gi|328531287|gb|EGF58131.1| ribosome recycling factor [Bacteroides fluxus YIT 12057] Length = 186 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 74/178 (41%), Positives = 106/178 (59%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + +L++ ++ +R G+ +LD ++V++YGS VP+N VA VT + R + Sbjct: 8 LDEAQEKMDMAVMYLEEALVHIRAGKADVRLLDGIRVDSYGSMVPINNVAAVTTPDARSI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK M +E+ I +S LG+ P G+++RI +P TEERR L K E +K Sbjct: 68 AIKPWDKSMFRVIEKAIIDSPLGIMPENNGEIIRIGIPPLTEERRKQLAKQCKGEGETAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +SVRN RRD +D LKKS K G A ED S E +QKI D IK ID K KEIM Sbjct: 128 VSVRNARRDAIDALKKSVKDGLA-EDAQKSGEEKLQKIHDKYIKQIDDMLAAKDKEIM 184 >gi|220915424|ref|YP_002490728.1| ribosome recycling factor [Anaeromyxobacter dehalogenans 2CP-1] gi|254809486|sp|B8J9V9|RRF_ANAD2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|219953278|gb|ACL63662.1| ribosome recycling factor [Anaeromyxobacter dehalogenans 2CP-1] Length = 188 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 68/180 (37%), Positives = 110/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++ R+ T+ L+ ++ +RTGR S +LD V+V+ YG+ PLNQVA ++V E R++ Sbjct: 9 LDDLHGRILKTLDQLRTELAAVRTGRASLHLLDNVRVDYYGTPTPLNQVATLSVPEARLI 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV W+K M+ +E+ I + NLGLNP+ + ++R+P+P TEERR +VK E+ K Sbjct: 69 VVKPWEKSMIPPIEKAIRDGNLGLNPMSDKDLVRVPIPALTEERRKEIVKQVKHKGEEHK 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I+VRN+RR+ + ++ + K G S D +QK TD +K ID K+K+++ Sbjct: 129 IAVRNVRREAKELIEVAEKDGDISGDDAEKALEKMQKETDDGVKKIDEIVAAKEKDVLQV 188 >gi|148656147|ref|YP_001276352.1| ribosome recycling factor [Roseiflexus sp. RS-1] gi|166231220|sp|A5UUU9|RRF_ROSS1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|148568257|gb|ABQ90402.1| ribosome recycling factor [Roseiflexus sp. RS-1] Length = 185 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 66/180 (36%), Positives = 110/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ + RM L+ + T+RTGR SP++++ + VEAYG+ +PLNQ+A +TV EPR+L Sbjct: 6 LREAESRMKKATEALRNHLATIRTGRASPALVEHLHVEAYGATLPLNQLATITVPEPRLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +D V ++ + I S LG+ P +G+V+R+ +P+ TE RR L K+ A E+SK Sbjct: 66 VIQPFDANTVKAISKAIMNSELGITPTDDGRVIRLAIPQLTEARRKELTKLVRARVEESK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIRR+ ++ L+ SED + +Q++TD ++ +D K+ E+M Sbjct: 126 IALRNIRREALEDLRDLEHEKMISEDEHRRAQEKLQELTDRFVRELDHIGATKEAEVMEI 185 >gi|197120712|ref|YP_002132663.1| ribosome recycling factor [Anaeromyxobacter sp. K] gi|238689905|sp|B4UMC6|RRF_ANASK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|196170561|gb|ACG71534.1| ribosome recycling factor [Anaeromyxobacter sp. K] Length = 188 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 68/180 (37%), Positives = 110/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++ R+ T+ L+ ++ +RTGR S +LD V+V+ YG+ PLNQVA ++V E R++ Sbjct: 9 LDDLHGRILKTLDQLRTELAAVRTGRASLHLLDNVRVDYYGTPTPLNQVATLSVPEARLI 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV W+K M+ +E+ I + NLGLNP+ + ++R+P+P TEERR +VK E+ K Sbjct: 69 VVKPWEKSMIPPIEKAIRDGNLGLNPMSDKDLVRVPIPALTEERRKEIVKQVKHKGEEHK 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I+VRN+RR+ + ++ + K G S D +QK TD +K ID K+K+++ Sbjct: 129 IAVRNVRREAKELIEVAEKDGDISGDDAEKALEKMQKETDEGVKKIDEIVAAKEKDVLQV 188 >gi|332705597|ref|ZP_08425673.1| ribosome recycling factor [Lyngbya majuscula 3L] gi|332355389|gb|EGJ34853.1| ribosome recycling factor [Lyngbya majuscula 3L] Length = 182 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 67/178 (37%), Positives = 110/178 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++ M + ++ T+RTGR S S+LD V VE YG+ PL +AN+ + + Sbjct: 3 LADVETSMQKAVEATQRAFNTIRTGRASTSLLDRVMVEYYGTPTPLKSLANINTPDASTI 62 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + +DK M++ +E+ I S+L L P G+V+R+ +P T ERR VK+A +AE+ + Sbjct: 63 TIQPYDKSMLSQIEKAITLSDLDLPPNNNGEVVRLNIPPLTSERRKEFVKMASKFAEEGR 122 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +S+RNIRRD +D ++K K+ + SED L+++IQK+T+ K +D F K+K+IM Sbjct: 123 VSIRNIRRDAVDSVRKQDKNKEISEDESRDLQDEIQKLTNKYTKKVDEVFAAKEKDIM 180 >gi|90415796|ref|ZP_01223729.1| ribosome recycling factor [marine gamma proteobacterium HTCC2207] gi|90332170|gb|EAS47367.1| ribosome recycling factor [marine gamma proteobacterium HTCC2207] Length = 185 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 72/174 (41%), Positives = 103/174 (59%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM + L +RTGR PS+LD + V+ YG + PL Q A++ + + R L ++ W+ Sbjct: 12 RMTKALEALGNAFNKIRTGRAHPSLLDGIHVDYYGVNTPLAQAASIVIEDARTLSLTPWE 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K +V ++E+ I +S+LGLNP G V+R+P+P TEE R K A A AE +ISVRN+ Sbjct: 72 KSLVPAIEKAILKSDLGLNPTTAGAVIRLPLPSLTEETRKVYGKQAKAEAENGRISVRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD + LK K SED +++IQKITDS I ID K+K++M Sbjct: 132 RRDVLSSLKALLKDKDISEDEERRGQDEIQKITDSFIARIDEALVAKEKDLMEI 185 >gi|23466062|ref|NP_696665.1| ribosome recycling factor [Bifidobacterium longum NCC2705] gi|189439270|ref|YP_001954351.1| ribosome recycling factor [Bifidobacterium longum DJO10A] gi|227547303|ref|ZP_03977352.1| ribosome recycling factor [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239621373|ref|ZP_04664404.1| ribosome recycling factor [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312132645|ref|YP_003999984.1| frr [Bifidobacterium longum subsp. longum BBMN68] gi|317482870|ref|ZP_07941878.1| ribosome recycling factor [Bifidobacterium sp. 12_1_47BFAA] gi|322689306|ref|YP_004209040.1| ribosome recycling factor [Bifidobacterium longum subsp. infantis 157F] gi|322691318|ref|YP_004220888.1| ribosome recycling factor [Bifidobacterium longum subsp. longum JCM 1217] gi|34924973|sp|Q8G483|RRF_BIFLO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238692052|sp|B3DRT4|RRF_BIFLD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|23326787|gb|AAN25301.1| ribosome recycling factor [Bifidobacterium longum NCC2705] gi|189427705|gb|ACD97853.1| Ribosome recycling factor [Bifidobacterium longum DJO10A] gi|227212262|gb|EEI80158.1| ribosome recycling factor [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239515834|gb|EEQ55701.1| ribosome recycling factor [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291516839|emb|CBK70455.1| ribosome recycling factor [Bifidobacterium longum subsp. longum F8] gi|311773596|gb|ADQ03084.1| Frr [Bifidobacterium longum subsp. longum BBMN68] gi|316915715|gb|EFV37129.1| ribosome recycling factor [Bifidobacterium sp. 12_1_47BFAA] gi|320456174|dbj|BAJ66796.1| ribosome recycling factor [Bifidobacterium longum subsp. longum JCM 1217] gi|320460642|dbj|BAJ71262.1| ribosome recycling factor [Bifidobacterium longum subsp. infantis 157F] Length = 183 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 68/179 (37%), Positives = 109/179 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + K++M T+ K++ +RTGR +P++L+ + V+ YG+ P+ VA++ V EPR L Sbjct: 4 IDQAKEQMAKTVENTKENFSGIRTGRANPALLNGITVDYYGAPTPIKAVASIGVPEPRTL 63 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +D +VE+ + S+LG++P +G V+R+ +PE TE+RR VK+A AE K Sbjct: 64 SVTPFDASQAGAVEKALRNSDLGISPNRDGNVIRLTMPELTEDRRKEYVKLAKGKAEDGK 123 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRNIRR + + K+ K G+ ED L D+ K+T S ID+ E K+KEIM Sbjct: 124 VAVRNIRRKTKETIDKAVKDGEMGEDEGDRLLKDLDKVTKSVTDEIDTLLETKQKEIME 182 >gi|255036758|ref|YP_003087379.1| ribosome recycling factor [Dyadobacter fermentans DSM 18053] gi|254949514|gb|ACT94214.1| ribosome recycling factor [Dyadobacter fermentans DSM 18053] Length = 186 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 73/179 (40%), Positives = 109/179 (60%), Gaps = 1/179 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + KD M I L ++ +R G+ SP ML+ +++E YGS P+ VA + + R L Sbjct: 8 LDDAKDTMDGAIKHLIIELGKIRAGKASPQMLEGLQIEYYGSMTPIQNVATINTPDARTL 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + ++K+++ +E+ I SNLG +P +G+++RI VP EERR LVK A E +K Sbjct: 68 AIKPFEKKIINDIEKAIRNSNLGFSPSNDGEMIRISVPPLNEERRRELVKRAKNEIETAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 I+VRNIR+D + L+K K G SED+V S E +QK+TDS + I+ F K+KEIM Sbjct: 128 INVRNIRQDANNSLRKLTKEG-VSEDLVKSSEERVQKLTDSFVAKIEQIFSVKEKEIME 185 >gi|156743850|ref|YP_001433979.1| ribosome recycling factor [Roseiflexus castenholzii DSM 13941] gi|189044069|sp|A7NQW5|RRF_ROSCS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|156235178|gb|ABU59961.1| ribosome recycling factor [Roseiflexus castenholzii DSM 13941] Length = 185 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 65/180 (36%), Positives = 110/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ + RM L+ + T+RTGR SP++++ + VEAYG+ +PLNQ+A +TV EPRML Sbjct: 6 LREAESRMKKATEALRNHLATIRTGRASPALVEHLHVEAYGATLPLNQLATITVPEPRML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +D V ++ + I S LG+ P +G+++R+ +P+ TE RR L K+ A E+SK Sbjct: 66 VIQPFDANTVKAISKAIMNSELGITPTDDGRLIRLAIPQLTEARRKELTKLVRARVEESK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRR+ ++ L+ SED + +Q++TD ++ +D K+ E+M Sbjct: 126 VALRNIRREALEDLRDLEHEKMISEDEHRRAQEKLQELTDRYVRELDHIGATKEAEVMEI 185 >gi|124005436|ref|ZP_01690277.1| ribosome recycling factor [Microscilla marina ATCC 23134] gi|123989258|gb|EAY28836.1| ribosome recycling factor [Microscilla marina ATCC 23134] Length = 187 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 69/178 (38%), Positives = 110/178 (61%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K+ M + ++ +R G+ P+MLD ++V+ YG+ PLNQVA+VT + R L Sbjct: 9 LAEAKELMDKAVQHTNHELNKIRAGKAMPNMLDSIQVDYYGAPTPLNQVASVTAPDARTL 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ ++K ++A +E+ I +S+LGLNP +G+ +RI +P TEERR LVK E K Sbjct: 69 MIRPFEKSVIAGIEKAIRDSDLGLNPQNDGENIRINIPALTEERRKQLVKQVKQEIESGK 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +S+RN+R+D + LK +K G ASED V E +QK+T+ +D +E+K+ E+M Sbjct: 129 VSIRNVRKDTNNSLKDLQKEG-ASEDEVKRAEESVQKLTNDFTNKVDDLYEKKETELM 185 >gi|255320443|ref|ZP_05361624.1| ribosome recycling factor [Acinetobacter radioresistens SK82] gi|262378339|ref|ZP_06071496.1| ribosome recycling factor [Acinetobacter radioresistens SH164] gi|255302415|gb|EET81651.1| ribosome recycling factor [Acinetobacter radioresistens SK82] gi|262299624|gb|EEY87536.1| ribosome recycling factor [Acinetobacter radioresistens SH164] Length = 184 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 74/172 (43%), Positives = 107/172 (62%), Gaps = 1/172 (0%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM ++ L++ +RTGR PS+L+ V V YGS VPLNQVANV V + R LVV ++ Sbjct: 12 RMQKSLESLEQGFAKVRTGRAHPSILNGVMVPYYGSDVPLNQVANVGVEDSRTLVVQPFE 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + MV+++++ I ES+LGLNPI +R+P+P TEE R + KVA AE +K+++RNI Sbjct: 72 RTMVSAIDKAIRESDLGLNPIT-ADAIRVPMPALTEETRRDMQKVARTEAENAKVAIRNI 130 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD + +K K + SED +IQKITD + +D K+ E+M Sbjct: 131 RRDVLGDIKALLKEKEISEDDERRAGEEIQKITDKYVAEVDKRLAAKEAELM 182 >gi|225352148|ref|ZP_03743171.1| hypothetical protein BIFPSEUDO_03763 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157395|gb|EEG70734.1| hypothetical protein BIFPSEUDO_03763 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 184 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 69/179 (38%), Positives = 108/179 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K +M ++ K++ +RTGR +P++L+ + V+ YG+ PL VA + V EPR L Sbjct: 5 VEQAKAQMAKSVESTKENFSGIRTGRANPALLNGITVDYYGAPTPLKAVATIGVPEPRTL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +D +VE+ + +S+LG +P +G V+R+ +PE TEERR VK+A AE K Sbjct: 65 SVTPFDASQANAVEKALRDSDLGASPRRDGNVIRLTMPELTEERRKEYVKLAKGKAEDGK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRNIRR + L K+ K G+ ED L ++ KIT T +D+ E K+KEIM Sbjct: 125 VAVRNIRRKAKESLDKAIKDGEMGEDEGDRLLKELDKITKQTTDELDTLLEAKQKEIME 183 >gi|190571622|ref|YP_001975980.1| ribosome recycling factor [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019024|ref|ZP_03334831.1| ribosome recycling factor [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|238057838|sp|B3CNH2|RRF_WOLPP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|190357894|emb|CAQ55354.1| ribosome recycling factor [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995133|gb|EEB55774.1| ribosome recycling factor [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 185 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 72/175 (41%), Positives = 111/175 (63%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K+RM TI DM +RTGR + S+LD + V YG H LNQVA V+ ++ + L V V Sbjct: 10 KERMLKTIQSFHDDMKGVRTGRANASLLDGIVVNIYGGHQKLNQVAGVSAIDNKTLSVKV 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 WD + V+ I +NL LNP+VEG +RI +P+ T+E R LVK+ H ++E +++++R Sbjct: 70 WDATAIGEVKNAIINANLNLNPVVEGNTIRIVLPDLTQETREKLVKLLHQFSENARVAIR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 NIRRD M+ +++ +K+ + SED + +IQ ITD +K +D K+K+I+H Sbjct: 130 NIRRDVMEEIEEMKKNKEISEDDFHVAKKEIQNITDDNVKKVDDDLSIKEKDILH 184 >gi|292670556|ref|ZP_06603982.1| ribosome recycling factor [Selenomonas noxia ATCC 43541] gi|292647722|gb|EFF65694.1| ribosome recycling factor [Selenomonas noxia ATCC 43541] Length = 185 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 66/173 (38%), Positives = 110/173 (63%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M I L+++ +LR GR +P++LD V V YG+ +NQ+A VTV EP M+V++ W+K Sbjct: 13 MNKAIDVLRREFSSLRAGRATPNLLDKVMVPYYGTPTSVNQLAKVTVPEPHMIVITPWEK 72 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 E++ +E I +S+LGL+P +G V+R+ VP+ T+ERR L+K E++K+++RNIR Sbjct: 73 EILHDIEIAISKSDLGLSPNSDGTVIRLAVPQPTQERRKELIKTVGKKTEEAKVALRNIR 132 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RD + +KK K + +ED ++ +QK+ D +K ++ K+KE+M Sbjct: 133 RDANEAIKKLEKDKEINEDESKRGQDSVQKLVDKFVKQMEEMRASKEKEVMEI 185 >gi|296085196|emb|CBI28691.3| unnamed protein product [Vitis vinifera] Length = 274 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 67/177 (37%), Positives = 115/177 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +++K+RM TI ++ + ++RTGR +P++LD V+VE YG+ V L +A ++ + L+ Sbjct: 96 KDVKERMEKTIETVRTNFNSIRTGRANPAILDRVEVEYYGTPVSLKSIAQISTPDSASLL 155 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +DK + +E+ I S+LGL P +G+V+R+ +P+ T ERR L KV E+ K+ Sbjct: 156 VQPYDKSSLKVIEKAIVSSDLGLTPNNDGEVIRLSLPQLTSERRKELSKVVAKQTEEGKV 215 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++RNIRRD + +K K K SED V L +D+QK+ D +K I++ +++K+KE++ Sbjct: 216 ALRNIRRDALKAYEKLEKDKKLSEDNVKDLSSDLQKLIDEYMKKIETIYKQKEKELL 272 >gi|317014647|gb|ADU82083.1| ribosome recycling factor [Helicobacter pylori Gambia94/24] Length = 185 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 69/174 (39%), Positives = 108/174 (62%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 KD M ++ L +D TLR+ +VS +++D +KV+ YG+ PLNQV +V L+ L +S Sbjct: 10 KDLMQKSVQALNRDFSTLRSAKVSVNIVDHIKVDYYGTPTPLNQVGSVMSLDATTLQISP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 W+K ++ +ER I E+N+G+NP +G+ +++ P T E+R + K A A EK+K++VR Sbjct: 70 WEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTTEQRKLIAKDAKAMGEKAKVAVR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 NIR+D + +KK K + SED + IQKITD IK ID + K+ I+ Sbjct: 130 NIRQDANNQVKKLEKDKEISEDESKKAQEQIQKITDEAIKKIDESVKNKEDAIL 183 >gi|119025802|ref|YP_909647.1| ribosome recycling factor [Bifidobacterium adolescentis ATCC 15703] gi|154487366|ref|ZP_02028773.1| hypothetical protein BIFADO_01216 [Bifidobacterium adolescentis L2-32] gi|166230413|sp|A1A1I2|RRF_BIFAA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|118765386|dbj|BAF39565.1| ribosome recycling factor [Bifidobacterium adolescentis ATCC 15703] gi|154083884|gb|EDN82929.1| hypothetical protein BIFADO_01216 [Bifidobacterium adolescentis L2-32] Length = 184 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 70/185 (37%), Positives = 109/185 (58%), Gaps = 2/185 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M ++D K +M ++ K++ +RTGR +P++L+ + V+ YG+ PL VA + V Sbjct: 1 MATIVD--QAKAQMAKSVESTKENFSGIRTGRANPALLNGITVDYYGAPTPLKAVATIGV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPR L V+ +D +VE+ + +S+LG +P +G V+R+ +PE TEERR VK+A Sbjct: 59 PEPRTLAVTPFDASQANAVEKALRDSDLGASPRRDGNVIRLTMPELTEERRKEYVKIAKG 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE K++VRNIRR + L K+ K G ED L ++ K+T T +D+ E K+ Sbjct: 119 KAEDGKVAVRNIRRKAKESLDKAIKDGDMGEDEGDRLLKELDKVTKQTTDELDALLETKQ 178 Query: 181 KEIMH 185 KEIM Sbjct: 179 KEIME 183 >gi|118580463|ref|YP_901713.1| ribosome recycling factor [Pelobacter propionicus DSM 2379] gi|166230813|sp|A1AQN5|RRF_PELPD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|118503173|gb|ABK99655.1| ribosome recycling factor [Pelobacter propionicus DSM 2379] Length = 185 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 66/179 (36%), Positives = 111/179 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++K M T++ LK + +RTGR S ++LD VK++ YG+ P++Q+A + + EPRM+ Sbjct: 6 LSDMKTHMEKTVAVLKAEFQKVRTGRASTAILDSVKMDYYGNPTPISQIATLAIPEPRMI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ W+ + ++ +E+ I +N+GL P +G+ +R+ +P TEERR +VK AE ++ Sbjct: 66 TITPWEAKQISVIEKAIFNANIGLTPSNDGKSIRLSLPPLTEERRREIVKDLKKMAEDNR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +++RNIRRD +D LKK K +ED + E ++Q T S ID K+KE+M Sbjct: 126 VALRNIRRDAIDRLKKLEKDKSITEDELKKYEKEVQDNTKSFEIKIDEAMTNKEKEVME 184 >gi|299769701|ref|YP_003731727.1| ribosome recycling factor [Acinetobacter sp. DR1] gi|298699789|gb|ADI90354.1| ribosome recycling factor [Acinetobacter sp. DR1] Length = 184 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 74/172 (43%), Positives = 107/172 (62%), Gaps = 1/172 (0%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM T+ L+ +RTGR PS+L+ V V YGS VPLNQVANV + + R L+V ++ Sbjct: 12 RMLKTLESLELGFAKVRTGRAHPSILNGVMVPYYGSDVPLNQVANVGIEDSRTLIVQPFE 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + MV+++++ I ES+LGLNPI +R+P+P TEE R + KVA AE +K+++RNI Sbjct: 72 RTMVSAIDKAIRESDLGLNPIT-ADAIRVPLPALTEETRRDMQKVARNEAENAKVAIRNI 130 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD + +K K + SED +DIQKITD + +D K+ E+M Sbjct: 131 RRDVLGDIKALLKEKEISEDDERRAGDDIQKITDKYVAEVDKRLAAKEAELM 182 >gi|225437014|ref|XP_002272648.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 280 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 67/177 (37%), Positives = 115/177 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +++K+RM TI ++ + ++RTGR +P++LD V+VE YG+ V L +A ++ + L+ Sbjct: 102 KDVKERMEKTIETVRTNFNSIRTGRANPAILDRVEVEYYGTPVSLKSIAQISTPDSASLL 161 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +DK + +E+ I S+LGL P +G+V+R+ +P+ T ERR L KV E+ K+ Sbjct: 162 VQPYDKSSLKVIEKAIVSSDLGLTPNNDGEVIRLSLPQLTSERRKELSKVVAKQTEEGKV 221 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++RNIRRD + +K K K SED V L +D+QK+ D +K I++ +++K+KE++ Sbjct: 222 ALRNIRRDALKAYEKLEKDKKLSEDNVKDLSSDLQKLIDEYMKKIETIYKQKEKELL 278 >gi|307566353|ref|ZP_07628792.1| ribosome recycling factor [Prevotella amnii CRIS 21A-A] gi|307344930|gb|EFN90328.1| ribosome recycling factor [Prevotella amnii CRIS 21A-A] Length = 186 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 68/178 (38%), Positives = 113/178 (63%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ K+RM + +L +++ +R GR + ++LD V+V +YG V LNQVA V V + R + Sbjct: 8 LKEAKERMNMAVMYLDEELQRIRAGRANVAILDSVRVSSYGQMVSLNQVATVMVPDARTI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WD++ + +E+ I +S++G+ P G+++R+ +P+ TEERR LVK + EK+K Sbjct: 68 AIKPWDRKAIKDIEKAIMDSDVGITPENNGEMIRLNLPQPTEERRRELVKQCNKIGEKTK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 I +RN+R D + LKK+ K G SED+ E+D+QK+ D IK ++ K+KE+M Sbjct: 128 IQIRNVRTDIKEILKKAIKEG-LSEDLEKDAESDLQKVHDKYIKQVEDLLAAKEKEVM 184 >gi|148241959|ref|YP_001227116.1| ribosome recycling factor [Synechococcus sp. RCC307] gi|147850269|emb|CAK27763.1| Ribosome recycling factor [Synechococcus sp. RCC307] Length = 179 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 63/177 (35%), Positives = 113/177 (63%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 +++D M ++ +++ T+RTGR + S+LD V VE YG+ PL +A ++ + + + + Sbjct: 2 DLEDSMSKSLEATQRNFNTIRTGRANTSLLDKVMVEYYGADTPLKSLATISAPDSQTIQI 61 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 +D +A +E+ I S+LGL P +G+++RI +P TEERR L K+A YAE+ K++ Sbjct: 62 QPFDMGSMALIEKAIGMSDLGLTPNNDGKLIRINIPPLTEERRKELCKIASKYAEEGKVA 121 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +RN+RRD +D +KK K G+ SED+ ++ +QK+TD I +++ +K+ +I+ Sbjct: 122 LRNVRRDAIDQIKKREKDGELSEDLSRDEQDKVQKVTDKFIADLEKLLADKEADILK 178 >gi|301165592|emb|CBW25163.1| ribosome recycling factor [Bacteriovorax marinus SJ] Length = 185 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 71/174 (40%), Positives = 104/174 (59%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M +I LK + +RTGR S S+LD V V+ YGS P+ QV ++ E R+L + +D Sbjct: 12 QMTKSIDSLKYQLTKVRTGRASASVLDGVHVDYYGSPTPVAQVGQISTPEARLLQIQPFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K M+A++E+ I +NLGL P +G ++RIP P TEERR VK E +KI +RN Sbjct: 72 KTMIAAIEKAILGANLGLTPSNDGNLIRIPFPALTEERRKEQVKEIKKSGEDAKIGIRNS 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD + +KK+ K+ + SED + DIQ ITD + +D E K+KE++ Sbjct: 132 RRDQNEVVKKAEKAKEISEDESKKFQADIQTITDKYVAEVDVIIEAKEKELLSI 185 >gi|258653276|ref|YP_003202432.1| ribosome recycling factor [Nakamurella multipartita DSM 44233] gi|258556501|gb|ACV79443.1| ribosome recycling factor [Nakamurella multipartita DSM 44233] Length = 185 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 66/180 (36%), Positives = 109/180 (60%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 +L + +++M +S K D+ TLRTGR +P+M ++V+ YG+ P+ Q+A + + E RM Sbjct: 5 ELFDAEEKMEKAVSVAKDDLATLRTGRANPNMFGRIQVDYYGAPTPITQMAAINIPEARM 64 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 V+ +D + +VE+ I +S+LG+NP +G V+R+ P+ TE+RR L K A + E + Sbjct: 65 AVIKPYDSSQLHAVEKAIRDSDLGVNPTTDGIVIRVVFPQLTEQRRRELGKTARSKGEDA 124 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 K+S+RNIRR L K K G+ ED V E ++Q+ITD +D + K+ E++ Sbjct: 125 KVSIRNIRRKCTQVLDKLVKDGEVGEDDVTRAEKELQQITDRYTSQVDEMVKHKEAELLE 184 >gi|72161083|ref|YP_288740.1| ribosome recycling factor [Thermobifida fusca YX] gi|123630034|sp|Q47S50|RRF_THEFY RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|71914815|gb|AAZ54717.1| ribosome recycling factor [Thermobifida fusca YX] Length = 185 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 65/179 (36%), Positives = 108/179 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K+D ++RTGR SP+ + VE YG+ P+NQ+A+ V EPRM+ Sbjct: 6 LLEAEEKMEKAVLVTKEDFASIRTGRPSPATFSRITVEYYGAMTPVNQLASFQVPEPRMV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +DK + ++E+ I ES+LG+NP +G ++R+ PE +EERR VKVA AE + Sbjct: 66 IISPYDKAAMPAIEKAIRESDLGVNPSNDGNIIRVVFPELSEERRKEYVKVARNKAEDGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 SVRN+RR D + K+ K+G+ ED + ++ +T + ID + K+ E++ Sbjct: 126 TSVRNVRRQAKDAIDKAVKAGEIGEDEGHRAQKELDALTQKYVGEIDELLKHKESELLE 184 >gi|15827834|ref|NP_302097.1| ribosome recycling factor [Mycobacterium leprae TN] gi|221230311|ref|YP_002503727.1| ribosome recycling factor [Mycobacterium leprae Br4923] gi|3122778|sp|O33046|RRF_MYCLE RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|254809523|sp|B8ZRV0|RRF_MYCLB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|2251188|emb|CAB10670.1| ribosome recycling factor [Mycobacterium leprae] gi|13093386|emb|CAC30541.1| ribosome recycling factor [Mycobacterium leprae] gi|219933418|emb|CAR71685.1| ribosome recycling factor [Mycobacterium leprae Br4923] Length = 185 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 67/178 (37%), Positives = 110/178 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++M +S ++D+ +RTGR +P M + ++ YGS P+ Q+A++ V E R++ Sbjct: 6 LFDAEEKMEKAVSVAREDLSMIRTGRANPGMFSRLVIDYYGSATPITQLASINVPEARLV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +D + ++E I S+LG+NP +G ++R+ VP+ TEERR LVK A E +K Sbjct: 66 VIKPYDAIQLHAIETAIRNSDLGVNPSNDGTLIRVAVPQLTEERRRELVKQAKCKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +SVRNIRR M+ L + RK G+A ED V+ E D+ K T + ID + K+ E++ Sbjct: 126 VSVRNIRRKVMEELHRIRKDGEAGEDEVSRAEKDLDKTTHQYVIQIDELVKHKEGELL 183 >gi|296454244|ref|YP_003661387.1| ribosome recycling factor [Bifidobacterium longum subsp. longum JDM301] gi|296183675|gb|ADH00557.1| ribosome recycling factor [Bifidobacterium longum subsp. longum JDM301] Length = 183 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 68/179 (37%), Positives = 109/179 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + K++M T+ K++ +RTGR +P++L+ + V+ YG+ P+ VA++ V EPR L Sbjct: 4 IDQAKEQMARTVENTKENFSGIRTGRANPALLNGITVDYYGAPTPIKAVASIGVPEPRTL 63 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +D +VE+ + S+LG++P +G V+R+ +PE TE+RR VK+A AE K Sbjct: 64 SVTPFDASQAGAVEKALRNSDLGISPNRDGNVIRLTMPELTEDRRKEYVKLAKGKAEDGK 123 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRNIRR + + K+ K G+ ED L D+ K+T S ID+ E K+KEIM Sbjct: 124 VAVRNIRRKTKETIDKAVKDGEMGEDEGDRLLKDLDKVTKSVTDEIDTLLETKQKEIME 182 >gi|88798260|ref|ZP_01113846.1| ribosome recycling factor [Reinekea sp. MED297] gi|88779036|gb|EAR10225.1| ribosome recycling factor [Reinekea sp. MED297] Length = 185 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 70/168 (41%), Positives = 102/168 (60%) Query: 17 TISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMV 76 I+ L +RTGR +P++LD + V+ YG+ P+ QVAN+ V + R L + W+K MV Sbjct: 16 AIAALDDAFNKIRTGRANPAILDKISVDYYGTDTPIKQVANIIVEDGRTLSIVPWEKNMV 75 Query: 77 ASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDG 136 VE+ I +S+LGLNP G +RI +P TEE R +KVA AEK+++S+RN RRD Sbjct: 76 PEVEKAIMKSDLGLNPATAGSNIRIVMPMLTEETRKEFIKVARGEAEKARVSIRNGRRDA 135 Query: 137 MDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +K+ K + SED E DIQK+TD+ I +D EK+ ++M Sbjct: 136 NSAVKELVKEKELSEDEGKRAEEDIQKLTDAAIAQVDKHLTEKEADLM 183 >gi|86131442|ref|ZP_01050040.1| Ribosome recycling factor [Dokdonia donghaensis MED134] gi|85817887|gb|EAQ39055.1| Ribosome recycling factor [Dokdonia donghaensis MED134] Length = 185 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 75/174 (43%), Positives = 107/174 (61%), Gaps = 3/174 (1%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K+ M + I+ L K ++T+R G+ SP+ML + V+ YGS PL+QVANV + R + + Sbjct: 13 KEAMDNAITHLGKRLLTIRAGKASPAMLQGLMVDYYGSPTPLSQVANVVAPDGRTISIQP 72 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 W+K ++ +E+ I NLG NP+ G+ + I VP TEERR LVK A A AE +K+ VR Sbjct: 73 WEKSIIQEIEKAIINGNLGFNPMNNGESVIINVPPLTEERRKELVKQAKAEAEDAKVGVR 132 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 N R++ + +K K ASED A+ E DIQK+TD IK I+ K+ EIM Sbjct: 133 NDRKNANNDIK---KVDSASEDEKANAEVDIQKLTDIHIKKIEEVLANKETEIM 183 >gi|209526796|ref|ZP_03275317.1| ribosome recycling factor [Arthrospira maxima CS-328] gi|209492757|gb|EDZ93091.1| ribosome recycling factor [Arthrospira maxima CS-328] Length = 187 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 65/181 (35%), Positives = 111/181 (61%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 ++ L ++++ M + + T+RTGR + S+LD + VE YGS PL +A+++ + Sbjct: 5 LVKLADVENLMKKALESTGRSFNTIRTGRANASLLDRITVEYYGSPTPLKSLASISTPDA 64 Query: 64 RMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAE 123 + + +D+ + ++E+ I S++GL P +G V+R+ +P TE RR VK+A YAE Sbjct: 65 STITIQPFDRNSLNNIEKAISMSDVGLTPNNDGSVVRLNIPPLTEARRQEFVKLAGKYAE 124 Query: 124 KSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 + ++SVRNIRRD +D ++K K+G SED +++ IQK+TD +D E K+K+I Sbjct: 125 EGRVSVRNIRRDAIDSVRKQEKNGDISEDESRDIQDKIQKLTDKYTAKVDELLEAKEKDI 184 Query: 184 M 184 M Sbjct: 185 M 185 >gi|330998184|ref|ZP_08322010.1| ribosome recycling factor [Paraprevotella xylaniphila YIT 11841] gi|329568876|gb|EGG50674.1| ribosome recycling factor [Paraprevotella xylaniphila YIT 11841] Length = 186 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 71/178 (39%), Positives = 106/178 (59%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + +L + + +R G+ +LD ++V++YGS VP+N VA V + R + Sbjct: 8 LDEAQEKMDMAVMYLDEALAHIRAGKADIRLLDGIRVDSYGSMVPINNVAAVNTPDARSI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK M ++E+ I +S LG+ P G+++RI +P TEERR L K A E +K Sbjct: 68 AIKPWDKNMFRAIEKAIIDSELGIMPENNGEIIRIGIPPLTEERRKQLAKQCKAECETAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +SVRN RRD +D LKK+ K G A ED + E +QK+ D IK ID + K KEIM Sbjct: 128 VSVRNARRDAIDALKKAVKDGMA-EDEQKNSEAKLQKVHDKYIKQIDDLYAAKDKEIM 184 >gi|262376192|ref|ZP_06069422.1| ribosome recycling factor [Acinetobacter lwoffii SH145] gi|262308793|gb|EEY89926.1| ribosome recycling factor [Acinetobacter lwoffii SH145] Length = 184 Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 73/174 (41%), Positives = 108/174 (62%), Gaps = 1/174 (0%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 +DRM T+ L+ +RTGR PS+L+ V V YGS VPLNQVANV V + R L++ Sbjct: 10 EDRMNKTLESLEHGFAKVRTGRAHPSILNNVMVSYYGSDVPLNQVANVGVEDSRTLLIQP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +++ MV+++++ I ES+LGLNPI +R+P+ TEE R + KVA AE +K+++R Sbjct: 70 FERSMVSAIDKAIRESDLGLNPIT-ADAIRVPMAALTEETRRDMQKVARNEAENAKVAIR 128 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 NIRRD + +K K + SED ++IQKITD + +D K+ E+M Sbjct: 129 NIRRDVLGDIKALLKEKEISEDEERRAADEIQKITDKFVAEVDKRLAAKEAELM 182 >gi|218129178|ref|ZP_03457982.1| hypothetical protein BACEGG_00753 [Bacteroides eggerthii DSM 20697] gi|217988556|gb|EEC54876.1| hypothetical protein BACEGG_00753 [Bacteroides eggerthii DSM 20697] Length = 212 Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 73/178 (41%), Positives = 106/178 (59%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + +L++ + +R G+ +LD ++V++YGS VP+N VA VT + R + Sbjct: 34 LDEAQEKMDMAVMYLEESLAHIRAGKADVRLLDGIRVDSYGSMVPINNVAAVTTPDARSI 93 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK M +E+ I +S+LG+ P G+++RI +P TEERR L K +E +K Sbjct: 94 AIKPWDKSMFRVIEKAIIDSDLGIMPENNGEIIRIGIPPLTEERRKQLAKQCKNESETAK 153 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +SVRN RRD +D LKKS K G A ED E +QKI D IK ID K KEIM Sbjct: 154 VSVRNARRDAIDALKKSVKEGLA-EDAQKGGEEKLQKIHDKYIKQIDDMLAAKDKEIM 210 >gi|167770609|ref|ZP_02442662.1| hypothetical protein ANACOL_01955 [Anaerotruncus colihominis DSM 17241] gi|167667204|gb|EDS11334.1| hypothetical protein ANACOL_01955 [Anaerotruncus colihominis DSM 17241] Length = 184 Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 67/180 (37%), Positives = 108/180 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ ++M TI L+ + +R GR +P++LD + V+ YG+ + +A ++V E R+L Sbjct: 5 LKHYNEKMEKTIRVLENEYSAIRAGRANPAVLDKITVDYYGTPTQIQAMAAISVSEARIL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK + +E+ I S++G+NP +G V+RI P TEERR + K E SK Sbjct: 65 VIQPWDKSTLRPIEKAIQASDIGINPTNDGTVIRIVFPPLTEERRKEICKQIKKQGEDSK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++R+IRRD + K +KS + SED LE+ +QK+TD K ID +K+KEI+ Sbjct: 125 VAIRSIRRDANEKFKALKKSSEVSEDEEKDLEDQMQKMTDKFCKRIDEIAAKKEKEILEI 184 >gi|313207473|ref|YP_004046650.1| ribosome recycling factor [Riemerella anatipestifer DSM 15868] gi|312446789|gb|ADQ83144.1| ribosome recycling factor [Riemerella anatipestifer DSM 15868] gi|315023373|gb|EFT36383.1| Ribosome recycling factor [Riemerella anatipestifer RA-YM] gi|325335067|gb|ADZ11341.1| Ribosome recycling factor [Riemerella anatipestifer RA-GD] Length = 184 Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 72/178 (40%), Positives = 104/178 (58%), Gaps = 3/178 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L N + M I L+ + +R GR S +M+ V VE YGS PLNQVANV++ + + Sbjct: 8 LDNARQEMDAAIKHLEHAFLKIRAGRASTAMVQDVMVEYYGSPTPLNQVANVSIPDAMTI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WD+ + +E+GI SNLG P G + + VP TEERR L K A A AE++K Sbjct: 68 AIQPWDRSAIKDIEKGIINSNLGFAPSNNGDTIILNVPPLTEERRKDLAKQAKAEAEQTK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++VRN R+D M LK K SED++ EN++Q++TD I ID ++ K+ +IM Sbjct: 128 VTVRNARQDAMKDLK---KLDGVSEDIIKDTENEVQQLTDKYISTIDDHYKHKEVDIM 182 >gi|219130047|ref|XP_002185186.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217403365|gb|EEC43318.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 173 Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 66/173 (38%), Positives = 108/173 (62%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M ++ ++ ++ ++RTGR S +LD VKV+ YG PLNQ+A ++V + L + +DK Sbjct: 1 MAKSVDSVRLNLQSVRTGRASAQILDRVKVDYYGVETPLNQMATISVPSAQQLSIDPYDK 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 + ++E I ES+LGL +G ++RI +P TE+RR ++K+ + E+ K++VRNIR Sbjct: 61 TSLNNIETAIVESDLGLTTNNDGSIIRINIPSMTEDRRKEMLKLCKSIGEEGKVAVRNIR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RDG+D +KK KS ED + ++ +QK+TD +K ID K+KE+M Sbjct: 121 RDGLDTIKKMEKSSDIGEDEMKDGQDTMQKLTDKNVKEIDEVVGAKEKEVMKV 173 >gi|225552204|ref|ZP_03773144.1| ribosome recycling factor [Borrelia sp. SV1] gi|225371202|gb|EEH00632.1| ribosome recycling factor [Borrelia sp. SV1] Length = 184 Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 70/173 (40%), Positives = 108/173 (62%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 ++M + L + TLRTGR+S ++ D + ++ +G P+ QV+++ + E R++V+ W Sbjct: 10 EKMSKVLLSLDNEYKTLRTGRISSNIFDRIFIQYHGQRTPITQVSSIRIPEARLVVIQPW 69 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 DK ++ +E+ I S+L +NP +G V+RI VP T ERR +VK A AE+ KIS RN Sbjct: 70 DKSILNKIEQAILNSDLSMNPSGDGSVIRIKVPALTSERRQDIVKHAKKIAEEHKISTRN 129 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 IR+D + +KK K + +ED + + +DIQK TD IK IDS E K +EIM Sbjct: 130 IRQDLNNKVKKQEKESEITEDSLKRILDDIQKSTDMYIKKIDSILESKIQEIM 182 >gi|149277338|ref|ZP_01883480.1| ribosome recycling factor (ribosome releasing factor) [Pedobacter sp. BAL39] gi|149232215|gb|EDM37592.1| ribosome recycling factor (ribosome releasing factor) [Pedobacter sp. BAL39] Length = 187 Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 76/186 (40%), Positives = 114/186 (61%), Gaps = 3/186 (1%) Query: 1 MNQVI--DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 MN +I LQ+ + M I + ++ +R G+ S MLD + V+ YGS L+QVA++ Sbjct: 1 MNDLIKKQLQDAQASMDKAIDHCESELTKIRAGKASAGMLDGIFVDYYGSSTGLSQVASI 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 + R L+V W+K M+ +ER I E+N+G+NP +G V+R+ VP TEERR LVK Sbjct: 61 NTPDARTLLVQPWEKNMLVPIERAIMEANIGINPQNDGVVIRLVVPPLTEERRRDLVKKV 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 AE+ KI+VRNIR+D + +KK K S+D + + E ++QKITD+ I +D E Sbjct: 121 KEEAERGKITVRNIRKDANEKIKK-LKGESVSDDEIKTGEAEVQKITDAYIIKVDKHAEA 179 Query: 179 KKKEIM 184 K+K+IM Sbjct: 180 KEKDIM 185 >gi|149921516|ref|ZP_01909967.1| ribosome recycling factor [Plesiocystis pacifica SIR-1] gi|149817591|gb|EDM77059.1| ribosome recycling factor [Plesiocystis pacifica SIR-1] Length = 185 Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 72/178 (40%), Positives = 114/178 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ +D M L +++ +R GR +P++LD V+VEAYG + L +VA V+ + R+L Sbjct: 6 LELAEDAMKSAQERLARELSRVRAGRANPALLDGVRVEAYGVQMSLREVATVSTADARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V +D ++SVE+ I S LGLNP +G VLR+P+P TEERR +LVK AE++K Sbjct: 66 IVKPFDANTISSVEKAIMNSGLGLNPSSDGVVLRVPIPPLTEERRRSLVKQVKDQAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 I++R+ RR+G D LK + K + SED + + +Q++T+ + IDS ++K+ EIM Sbjct: 126 IAIRSGRREGNDLLKGAEKDKEISEDELKRGLDKVQELTNRYVAMIDSAVKKKESEIM 183 >gi|226306032|ref|YP_002765992.1| ribosome recycling factor [Rhodococcus erythropolis PR4] gi|229491439|ref|ZP_04385263.1| ribosome recycling factor [Rhodococcus erythropolis SK121] gi|259494552|sp|C0ZY18|RRF_RHOE4 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226185149|dbj|BAH33253.1| ribosome recycling factor [Rhodococcus erythropolis PR4] gi|229321724|gb|EEN87521.1| ribosome recycling factor [Rhodococcus erythropolis SK121] Length = 185 Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 64/175 (36%), Positives = 108/175 (61%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 +++M ++ K D+ ++RTGR +P M + ++ YGS P+ Q+A++ V E RM++V Sbjct: 10 EEKMEKAVTVAKDDLGSVRTGRANPGMFSRIVIDYYGSITPITQLASINVPEARMVIVKP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 ++ + ++E I S+LG+NP +G ++RI VP+ TEERR LVK A + E SK+++R Sbjct: 70 YEASQLNAIETAIRNSDLGVNPSNDGSIIRISVPQLTEERRRELVKQAKSKGEDSKVTLR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 NIRR MD L + +K G+A ED V E ++ K T + ++ + K+ E+M Sbjct: 130 NIRRKAMDELGRIQKDGEAGEDEVGRAEKELDKTTAKYVHTVEELVKHKEAELME 184 >gi|317475153|ref|ZP_07934420.1| ribosome recycling factor [Bacteroides eggerthii 1_2_48FAA] gi|316908606|gb|EFV30293.1| ribosome recycling factor [Bacteroides eggerthii 1_2_48FAA] Length = 186 Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 73/178 (41%), Positives = 106/178 (59%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + +L++ + +R G+ +LD ++V++YGS VP+N VA VT + R + Sbjct: 8 LDEAQEKMDMAVMYLEESLAHIRAGKADVRLLDGIRVDSYGSMVPINNVAAVTTPDARSI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK M +E+ I +S+LG+ P G+++RI +P TEERR L K +E +K Sbjct: 68 AIKPWDKSMFRVIEKAIIDSDLGIMPENNGEIIRIGIPPLTEERRKQLAKQCKNESETAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +SVRN RRD +D LKKS K G A ED E +QKI D IK ID K KEIM Sbjct: 128 VSVRNARRDAIDALKKSVKEGLA-EDAQKGGEEKLQKIHDKYIKQIDDMLAAKDKEIM 184 >gi|238926718|ref|ZP_04658478.1| peptide chain release factor RF4 [Selenomonas flueggei ATCC 43531] gi|238885250|gb|EEQ48888.1| peptide chain release factor RF4 [Selenomonas flueggei ATCC 43531] Length = 185 Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 65/175 (37%), Positives = 110/175 (62%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 + M I L+++ +LR GR +P++LD V V YG+ +NQ+A VTV EP M+V++ W Sbjct: 11 ENMNKAIDVLRREFSSLRAGRATPNLLDKVMVPYYGTPTSVNQLAKVTVPEPHMIVITPW 70 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 +K ++ +E I +S+LGL+P +G V+R+ +P+ T+ERR L+K E++K+++RN Sbjct: 71 EKAILHEIEIAISKSDLGLSPNSDGNVIRLAIPQPTQERRKELIKTVGKKTEEAKVALRN 130 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 IRRD + +KK K + +ED ++ +QK+ D +K +D K+KE+M Sbjct: 131 IRRDANEAIKKLEKDKEINEDESKRGQDSVQKLVDKFVKQMDEMRTAKEKEVMEI 185 >gi|108761597|ref|YP_633491.1| ribosome recycling factor [Myxococcus xanthus DK 1622] gi|123247456|sp|Q1D1I2|RRF_MYXXD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|108465477|gb|ABF90662.1| ribosome recycling factor [Myxococcus xanthus DK 1622] Length = 185 Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 64/176 (36%), Positives = 112/176 (63%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 +K R+ ++ L+ D+ +RTGR S ++L+ V+V+ YG+ PL+ VA+V EPR++ + Sbjct: 9 LKGRIDKSLEGLRTDLTRVRTGRASIAILEGVRVDYYGTPTPLSGVASVNAPEPRLITIK 68 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 W+K ++ +E+ + E+NLG+NP+ +G+++R+P P TEERR + K E+ K+++ Sbjct: 69 PWEKSVLKDIEKALREANLGINPMNDGEMIRLPFPPLTEERRKDIAKQVKTKGEEFKVTI 128 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 RN+RRD + LK K K +ED + +QK TD+ I +D ++K+KE+M Sbjct: 129 RNLRRDANEVLKTQLKDKKITEDDHKRITEVVQKQTDAGITQVDEIVKKKEKEVME 184 >gi|265765322|ref|ZP_06093597.1| ribosome recycling factor [Bacteroides sp. 2_1_16] gi|263254706|gb|EEZ26140.1| ribosome recycling factor [Bacteroides sp. 2_1_16] Length = 186 Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 72/185 (38%), Positives = 114/185 (61%), Gaps = 5/185 (2%) Query: 4 VIDLQNI----KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVT 59 ++D++ I +++M + +L++ + +R G+ S +LD ++V++YGS VP++ VA VT Sbjct: 1 MVDIKTIIEESQEKMDMAVMYLEEALAHIRAGKASTRLLDGIRVDSYGSMVPISNVAAVT 60 Query: 60 VLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 + R + + WDK M +E+ I +S+LG+ P G+++RI +P TEERR L K Sbjct: 61 TPDARSITIKPWDKSMFRVIEKAIIDSDLGIMPENNGEIIRIGIPPLTEERRKQLAKQCK 120 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 A E +K+S+RN RRDG+D LKK+ K G A ED + E +QK+ D I I+ EK Sbjct: 121 AEGETAKVSIRNARRDGIDALKKAVKDGLA-EDEQKNAEAKLQKVHDKYIAKIEEMLAEK 179 Query: 180 KKEIM 184 KEIM Sbjct: 180 DKEIM 184 >gi|315587147|gb|ADU41528.1| ribosome recycling factor [Helicobacter pylori 35A] Length = 185 Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 70/174 (40%), Positives = 108/174 (62%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 KD M +I L +D TLR+ +VS ++LD +KV+ YG+ LNQV +V L+ L +S Sbjct: 10 KDLMQKSIQALNRDFSTLRSAKVSVNILDHIKVDYYGTPTALNQVGSVMSLDATTLQISP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 W+K ++ +ER I E+N+G+NP +G+ +++ P T E+R + K A A EK+K++VR Sbjct: 70 WEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTTEQRKLIAKDAKAMGEKAKVAVR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 NIR+D + +KK K + SED + IQKITD +IK ID + K+ I+ Sbjct: 130 NIRQDANNKIKKLEKDKEISEDESKKAQEQIQKITDESIKTIDESVKNKEDAIL 183 >gi|53711978|ref|YP_097970.1| ribosome recycling factor [Bacteroides fragilis YCH46] gi|60680182|ref|YP_210326.1| ribosome recycling factor [Bacteroides fragilis NCTC 9343] gi|253563986|ref|ZP_04841443.1| ribosome-recycling factor [Bacteroides sp. 3_2_5] gi|255007502|ref|ZP_05279628.1| ribosome recycling factor [Bacteroides fragilis 3_1_12] gi|313145197|ref|ZP_07807390.1| ribosome recycling factor [Bacteroides fragilis 3_1_12] gi|60390242|sp|Q64YJ0|RRF_BACFR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|81316748|sp|Q5LHL2|RRF_BACFN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|52214843|dbj|BAD47436.1| ribosome recycling factor [Bacteroides fragilis YCH46] gi|60491616|emb|CAH06368.1| putative ribosome recycling factor [Bacteroides fragilis NCTC 9343] gi|251947762|gb|EES88044.1| ribosome-recycling factor [Bacteroides sp. 3_2_5] gi|301161707|emb|CBW21247.1| putative ribosome recycling factor [Bacteroides fragilis 638R] gi|313133964|gb|EFR51324.1| ribosome recycling factor [Bacteroides fragilis 3_1_12] Length = 186 Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 70/178 (39%), Positives = 110/178 (61%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +++M + +L++ + +R G+ S +LD ++V++YGS VP++ VA VT + R + Sbjct: 8 IEESQEKMDMAVMYLEEALAHIRAGKASTRLLDGIRVDSYGSMVPISNVAAVTTPDARSI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK M +E+ I +S+LG+ P G+++RI +P TEERR L K A E +K Sbjct: 68 TIKPWDKSMFRVIEKAIIDSDLGIMPENNGEIIRIGIPPLTEERRKQLAKQCKAEGETAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +S+RN RRDG+D LKK+ K G A ED + E +QK+ D I I+ EK KEIM Sbjct: 128 VSIRNARRDGIDALKKAVKDGLA-EDEQKNAEAKLQKVHDKYIAKIEEMLAEKDKEIM 184 >gi|224539083|ref|ZP_03679622.1| hypothetical protein BACCELL_03983 [Bacteroides cellulosilyticus DSM 14838] gi|224519301|gb|EEF88406.1| hypothetical protein BACCELL_03983 [Bacteroides cellulosilyticus DSM 14838] Length = 186 Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 73/178 (41%), Positives = 105/178 (58%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + +L++ + +R G+ +LD ++V++YGS VP+N VA V + R + Sbjct: 8 LDEAQEKMDMAVMYLEEALAHIRAGKADVRLLDGIRVDSYGSMVPINNVAAVNTPDARSI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK M +E+ I +S+LG+ P G+++RI +P TEERR L K E +K Sbjct: 68 VIKPWDKSMFKVIEKAIIDSSLGIMPENNGEIIRIGIPPLTEERRKQLAKQCKGEGETAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +SVRN RRD +D LKKS K G A ED E +QKI D IK ID K KEIM Sbjct: 128 VSVRNARRDAIDGLKKSVKDGLA-EDAQKGGEEKLQKIHDKYIKQIDDMLAAKDKEIM 184 >gi|212715798|ref|ZP_03323926.1| hypothetical protein BIFCAT_00699 [Bifidobacterium catenulatum DSM 16992] gi|212661165|gb|EEB21740.1| hypothetical protein BIFCAT_00699 [Bifidobacterium catenulatum DSM 16992] Length = 184 Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 68/179 (37%), Positives = 108/179 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K +M ++ K++ +RTGR +P++L+ + V+ YG+ PL VA + V EPR L Sbjct: 5 VEQAKAQMAKSVESTKENFSGIRTGRANPALLNGITVDYYGAPTPLKAVATIGVPEPRTL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +D +VE+ + +S+LG +P +G V+R+ +PE TEERR VK+A AE K Sbjct: 65 SVTPFDASQANAVEKALRDSDLGASPRRDGNVIRLTMPELTEERRKEYVKLAKGKAEDGK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRNIRR + L K+ K G+ ED L ++ K+T T +D+ E K+KEIM Sbjct: 125 VAVRNIRRKAKESLDKAIKDGEMGEDDGDRLLKELDKVTKQTTDELDTLLEAKQKEIME 183 >gi|237751369|ref|ZP_04581849.1| ribosome releasing factor [Helicobacter bilis ATCC 43879] gi|229372735|gb|EEO23126.1| ribosome releasing factor [Helicobacter bilis ATCC 43879] Length = 185 Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 66/176 (37%), Positives = 112/176 (63%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 N K+ M ++ L+KD TLR+GRVS ++LD ++V+ YG+ PL QV +V + +++ Sbjct: 8 NTKEYMQKSLQSLQKDFATLRSGRVSVNILDNIRVDYYGTPTPLAQVGSVIAQDATTIII 67 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 + W+K ++ +E+ I E+N+G+NP +G+ +++ P T ++R + K A A EK+KI+ Sbjct: 68 NPWEKPLLKEIEKAIQEANIGVNPNADGECIKLFFPPMTSDQRKDIAKQAKAMGEKAKIA 127 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 VRNIR+D + +KK K + D ++IQKITD IK ID+ + K++E+M Sbjct: 128 VRNIRQDSNNAIKKLEKDKAITTDESKKGADEIQKITDEHIKKIDNMVKTKEEEVM 183 >gi|121638763|ref|YP_978987.1| ribosome recycling factor [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224991255|ref|YP_002645944.1| ribosome recycling factor [Mycobacterium bovis BCG str. Tokyo 172] gi|166230800|sp|A1KMM6|RRF_MYCBP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|254809522|sp|C1AFZ7|RRF_MYCBT RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|121494411|emb|CAL72892.1| Ribosome recycling factor frr [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224774370|dbj|BAH27176.1| ribosome recycling factor [Mycobacterium bovis BCG str. Tokyo 172] Length = 185 Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 64/178 (35%), Positives = 109/178 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++M ++ + D+ T+RTGR +P M + ++ YG+ + Q+A++ V E R++ Sbjct: 6 LFDAEEKMEKAVAVARDDLSTIRTGRANPGMFSRITIDYYGAATLITQLASINVPEARLV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ ++ + ++E I S+LG+NP +G ++R+ VP+ TEERR LVK A E++K Sbjct: 66 VIKPYEANQLRAIETAIRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +SVRNIRR M+ L + RK G+A ED V E D+ K T + ID + K+ E++ Sbjct: 126 VSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDKTTHQYVTQIDELVKHKEGELL 183 >gi|305665271|ref|YP_003861558.1| ribosome releasing factor [Maribacter sp. HTCC2170] gi|88710025|gb|EAR02257.1| ribosome releasing factor [Maribacter sp. HTCC2170] Length = 185 Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 73/178 (41%), Positives = 102/178 (57%), Gaps = 3/178 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K+ M I+ L+K+ + +R G+ +P+ML V V+ YGS PL+QVAN+ + R L Sbjct: 9 LDATKESMDAAITHLEKEFVKIRAGKANPAMLSSVMVDYYGSQTPLSQVANINTPDGRTL 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V W+K M+ +E I +NLG NP+ G + I VP TEERR+ L K A A AE +K Sbjct: 69 SVQPWEKNMLQEIETAIMHANLGFNPMNNGDFVIINVPPLTEERRIQLAKQAKAEAEHAK 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 + RN R++ +K ASEDM + E D+Q +TD K ID F K+ EIM Sbjct: 129 VGARNARQEANKEIK---DLDDASEDMKKNAEMDVQDLTDKYSKKIDDFLAAKEAEIM 183 >gi|124022470|ref|YP_001016777.1| ribosome recycling factor [Prochlorococcus marinus str. MIT 9303] gi|123962756|gb|ABM77512.1| Ribosome recycling factor [Prochlorococcus marinus str. MIT 9303] Length = 173 Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 63/171 (36%), Positives = 107/171 (62%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M ++ +++ T+RTGR +PS+LD + VE YG+ PL +A ++ + + + + +D Sbjct: 1 MHKSVEATQRNFATIRTGRANPSLLDRINVEYYGTETPLKSLATISTPDSQTIAIQPFDN 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 + +E+ I S+LGL P +G+++RI VP TEERR K+A YAE+ K+++RNIR Sbjct: 61 GSMGLIEKAIATSDLGLTPNNDGKIIRINVPPLTEERRKEFCKLAAKYAEEGKVALRNIR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RD +D +KK K + S+D ++ IQK+TD+ I I+ + EK+ +I+ Sbjct: 121 RDAIDKVKKLEKDAELSKDQSHDEQDGIQKLTDTFITEIEKYLAEKEADIL 171 >gi|15645870|ref|NP_208048.1| ribosome recycling factor [Helicobacter pylori 26695] gi|210135415|ref|YP_002301854.1| ribosome recycling factor [Helicobacter pylori P12] gi|3024576|sp|P56398|RRF_HELPY RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226749931|sp|B6JN96|RRF_HELP2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|2314423|gb|AAD08302.1| ribosome releasing factor (frr) [Helicobacter pylori 26695] gi|210133383|gb|ACJ08374.1| ribosome releasing factor [Helicobacter pylori P12] Length = 185 Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 70/174 (40%), Positives = 107/174 (61%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 KD M +I L +D TLR+ +VS ++LD +KV+ YG+ LNQV +V L+ L +S Sbjct: 10 KDLMQKSIQALNRDFSTLRSAKVSVNILDHIKVDYYGTPTALNQVGSVMSLDATTLQISP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 W+K ++ +ER I E+N+G+NP +G+ +++ P T E+R + K A A EK+K++VR Sbjct: 70 WEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTSEQRKLIAKDAKAMGEKAKVAVR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 NIR+D + +KK K + SED + IQKITD IK ID + K+ I+ Sbjct: 130 NIRQDANNQVKKLEKDKEISEDESKKAQEQIQKITDEAIKKIDESVKNKEDAIL 183 >gi|242310135|ref|ZP_04809290.1| ribosome recycling factor [Helicobacter pullorum MIT 98-5489] gi|239523432|gb|EEQ63298.1| ribosome recycling factor [Helicobacter pullorum MIT 98-5489] Length = 186 Score = 134 bits (338), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 64/174 (36%), Positives = 111/174 (63%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 ++ M +I +KK+ TLR+G+VS ++LD ++++ Y + PLNQV +V + +VV+ Sbjct: 11 QETMNKSIEAMKKEFGTLRSGKVSVAILDHIRIDYYDTPTPLNQVGSVIAQDASTIVVTP 70 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 W+K ++ +ER I E+N+G+NP +G+ +++ P T E+R + K A EK+KI++R Sbjct: 71 WEKNLLKEIERAIQEANIGVNPNNDGEAIKLFFPPMTSEQRKEIAKEAKNIGEKAKIAIR 130 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 NIR+D D +KK K SED +++IQK TD+ +K ID + K++E++ Sbjct: 131 NIRKDSNDKVKKLEKDKTISEDESKKAQDEIQKFTDNAVKKIDELVKHKEEELL 184 >gi|312892397|ref|ZP_07751892.1| ribosome recycling factor [Mucilaginibacter paludis DSM 18603] gi|311295181|gb|EFQ72355.1| ribosome recycling factor [Mucilaginibacter paludis DSM 18603] Length = 187 Score = 134 bits (338), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 77/178 (43%), Positives = 107/178 (60%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + K M I + + +R G+ SP+MLD V VE YG+ + QVA+V + R L Sbjct: 9 LTDAKALMEKAIEHTDSEFLKIRAGKASPAMLDGVMVEYYGTPTIITQVASVNSPDARTL 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV W+K ++ +ER I E+NLG NP +G V+RI VP TEERR LVK A AE K Sbjct: 69 VVQPWEKTLLGPIERAIMEANLGFNPQNDGIVIRINVPPLTEERRRDLVKRVKAEAENGK 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 I++RNIR+D + +KK K+ SED + E D+QK+ D+ I ID + K+K+IM Sbjct: 129 IALRNIRKDANEKIKK-LKTESVSEDEIKVGEADVQKLVDAYIIKIDQLTDVKEKDIM 185 >gi|224531659|ref|ZP_03672291.1| ribosome recycling factor [Borrelia valaisiana VS116] gi|224511124|gb|EEF81530.1| ribosome recycling factor [Borrelia valaisiana VS116] Length = 184 Score = 134 bits (338), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 69/173 (39%), Positives = 108/173 (62%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 ++M + L + TLRTGR+S ++ D + ++ +G P+ QV+++ + E R++V+ W Sbjct: 10 EKMSKVLLSLDNEYKTLRTGRISSNIFDKIFIQYHGQRTPITQVSSIRIPEARLVVIQPW 69 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 DK ++ +E+ I S+L +NP +G V+RI VP T ERR +VK A AE+ KIS RN Sbjct: 70 DKSILNKIEQAILNSDLSMNPSSDGSVIRIKVPALTSERRQDIVKHAKKIAEEHKISTRN 129 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 IR+D + +KK K + +ED + + +DIQK TD IK ID+ E K +EIM Sbjct: 130 IRQDLNNKVKKQEKESEITEDSLKRILDDIQKSTDIYIKKIDTILESKIQEIM 182 >gi|327404464|ref|YP_004345302.1| ribosome recycling factor [Fluviicola taffensis DSM 16823] gi|327319972|gb|AEA44464.1| ribosome recycling factor [Fluviicola taffensis DSM 16823] Length = 187 Score = 134 bits (338), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 73/175 (41%), Positives = 108/175 (61%), Gaps = 1/175 (0%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 +K +I L+ +++ +R G+ +PSML V V+ YGS P++QV NV ++ R L V Sbjct: 12 LKSSNAKSIDHLENELVKVRAGKATPSMLSGVLVDYYGSPTPIHQVGNVNSMDARTLTVQ 71 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 ++K M+ + +GI +NLGLNP G+ L I +P TEERR LVK A A AE +K+ + Sbjct: 72 AFEKNMLNEIAKGIMNANLGLNPQNNGEQLIIQIPLLTEERRRDLVKKARAEAEHAKVGI 131 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RN R+D +D + KS K+ SEDM E +IQ +T+ IK ID + K+K+IM Sbjct: 132 RNNRKDAIDMV-KSLKADGLSEDMTKDAETEIQNLTNGFIKKIDELVDLKEKDIM 185 >gi|189502668|ref|YP_001958385.1| hypothetical protein Aasi_1351 [Candidatus Amoebophilus asiaticus 5a2] gi|238692316|sp|B3ETV4|RRF_AMOA5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|189498109|gb|ACE06656.1| hypothetical protein Aasi_1351 [Candidatus Amoebophilus asiaticus 5a2] Length = 186 Score = 134 bits (338), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 71/157 (45%), Positives = 97/157 (61%), Gaps = 1/157 (0%) Query: 28 LRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESN 87 +R GR P MLD + + Y + PLNQVA +T + R LV+ W+++ + +E+ I S Sbjct: 29 IRAGRAMPDMLDGISILYYNAMTPLNQVAAITTPDARTLVIKPWERKCIQEIEKAIVNSK 88 Query: 88 LGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSG 147 LGLNP +G+V+RI VP TEERR LVK A AEK KIS+RNIR+D + K +K G Sbjct: 89 LGLNPQNDGEVVRIIVPPLTEERRKDLVKQAKNEAEKGKISIRNIRKDIKETFKHLQKDG 148 Query: 148 KASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ASED + E +Q +TD I NID+ K+ EI+ Sbjct: 149 -ASEDTIKRAEEKLQNLTDKHIHNIDNLLTHKEAEIL 184 >gi|58617480|ref|YP_196679.1| ribosome recycling factor [Ehrlichia ruminantium str. Gardel] gi|62900774|sp|Q5FG66|RRF_EHRRG RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|58417092|emb|CAI28205.1| Ribosome recycling factor [Ehrlichia ruminantium str. Gardel] Length = 185 Score = 134 bits (338), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 74/178 (41%), Positives = 109/178 (61%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ K+RM T+S D+ +RTGR S+LD + VE YG V LN +++++V + + L+ Sbjct: 7 QDAKNRMEKTLSVYLSDVDGIRTGRARASVLDGIVVETYGGRVKLNTISSISVSDNKTLL 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V VWD V +++ I SNLG EG V+R+ VP+ T++ R LVK+ +E +I Sbjct: 67 VKVWDINNVGAIKTAIINSNLGFGFSCEGAVIRLTVPDMTQDMRKNLVKLLGKISEDCRI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 S+RNIRRD MD LK + + SED + +IQKITD IK I+ F K+KE++H Sbjct: 127 SIRNIRRDIMDKLKIMQDNKDISEDDLRIAGVEIQKITDEIIKKINDTFLAKEKELLH 184 >gi|304436535|ref|ZP_07396508.1| ribosome recycling factor [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370478|gb|EFM24130.1| ribosome recycling factor [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 185 Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 64/173 (36%), Positives = 109/173 (63%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M I L+++ +LR GR +P++LD + V YG+ +NQ+A VTV EP M+V++ W+K Sbjct: 13 MSKAIEALRREFSSLRAGRATPNLLDKIMVPYYGTPTSVNQLAKVTVPEPHMIVITPWEK 72 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 ++ +E I +S+LGL+P +G V+R+ +P+ T+ERR L+K E++K+++RNIR Sbjct: 73 SILHEIEIAISKSDLGLSPNSDGNVIRLAIPQPTQERRKELIKTVGKKTEEAKVALRNIR 132 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RD + +KK K + +ED ++ +QK+ D +K +D K+KE+M Sbjct: 133 RDANEAIKKLEKDKEINEDESKRGQDSVQKLVDKFVKQMDEMRAAKEKEVMEI 185 >gi|297380436|gb|ADI35323.1| ribosome recycling factor [Helicobacter pylori v225d] gi|308062540|gb|ADO04428.1| ribosome recycling factor [Helicobacter pylori Cuz20] gi|308064035|gb|ADO05922.1| ribosome recycling factor [Helicobacter pylori Sat464] gi|332674059|gb|AEE70876.1| ribosome recycling factor [Helicobacter pylori 83] Length = 185 Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 70/174 (40%), Positives = 107/174 (61%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 KD M +I L +D TLR+ +VS ++LD +KV+ YG+ LNQV +V L+ L +S Sbjct: 10 KDLMQKSIQALNRDFSTLRSAKVSVNILDHIKVDYYGTPTALNQVGSVMSLDATTLQISP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 W+K ++ +ER I E+N+G+NP +G+ +++ P T E+R + K A A EK+K++VR Sbjct: 70 WEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTTEQRKLIAKDAKAMGEKAKVAVR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 NIR+D + +KK K + SED + IQKITD IK ID + K+ I+ Sbjct: 130 NIRQDANNKIKKLEKDKEISEDESKKAQEQIQKITDEAIKTIDESVKNKEDAIL 183 >gi|319957835|ref|YP_004169098.1| ribosome recycling factor [Nitratifractor salsuginis DSM 16511] gi|319420239|gb|ADV47349.1| ribosome recycling factor [Nitratifractor salsuginis DSM 16511] Length = 185 Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 63/178 (35%), Positives = 112/178 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + +D M +I +K+D TLRTG+V+ ++D +KV+ YG+ PLNQV NVTV + + Sbjct: 6 FEETRDHMDKSIEAMKRDFATLRTGKVTTQIVDNIKVDYYGTPTPLNQVGNVTVTDATTI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ W+K M+ ++E+ I E+N+G+NP +G +++ P T E+R +VK A AEK+K Sbjct: 66 AINPWEKSMLPAIEKAIQEANIGVNPNNDGDFIKLFFPPMTVEQRQEIVKQAKQMAEKAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++RN+R++ + +K+ + SED + + IQK+TD I +D + K+ +I+ Sbjct: 126 VAIRNVRKESNNKIKRLEHDKEISEDEMKRALDQIQKLTDEFIAKVDESLKAKEADIL 183 >gi|308234682|ref|ZP_07665419.1| ribosome recycling factor [Gardnerella vaginalis ATCC 14018] gi|311114694|ref|YP_003985915.1| ribosome recycling factor [Gardnerella vaginalis ATCC 14019] gi|310946188|gb|ADP38892.1| ribosome recycling factor [Gardnerella vaginalis ATCC 14019] Length = 184 Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 65/174 (37%), Positives = 112/174 (64%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 ++M ++ K++ M +RTGR +P++L+ + V+ YG+ P+ VA++ V EPR L V+ + Sbjct: 10 EQMNKSVEATKENFMGIRTGRANPALLNGIMVDYYGAPTPIKAVASIGVPEPRTLSVTPF 69 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 D +VE+ I +S+LG++P +G V+R+ +PE TE+RR VK+A AE+ K++VRN Sbjct: 70 DASQANAVEKAIRDSDLGVSPNRDGNVIRVTMPELTEDRRKEYVKLAKTKAEEGKVAVRN 129 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 IRR +++ KS K G+ ED L+ ++ K+T ++D+ + K+KEIM Sbjct: 130 IRRKTKENIDKSVKDGEIGEDEGERLQKELDKVTKQVTDSLDALLDGKQKEIME 183 >gi|313204948|ref|YP_004043605.1| ribosome recycling factor [Paludibacter propionicigenes WB4] gi|312444264|gb|ADQ80620.1| ribosome recycling factor [Paludibacter propionicigenes WB4] Length = 186 Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 70/178 (39%), Positives = 109/178 (61%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ +D M T+ FL + + +R G+ +P +LD V+VE YG VP++ VA VT + + + Sbjct: 8 LKQAEDSMEATLLFLDESLAHIRAGKANPRILDGVRVEYYGQIVPISGVATVTTPDAKTI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + W+K ++ +E+ + S++G+ P+ G+ +R+ +P TE+RR L K + A E +K Sbjct: 68 TIQPWEKALIPIIEKALLNSDIGITPMNNGETIRLGIPPLTEDRRRQLAKQSKAECEDAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ISVRN RRD ++HLKK K G EDM E +QKI D IK I+ + K+KEIM Sbjct: 128 ISVRNARRDAIEHLKKMIKEG-LPEDMEKDAEVSVQKIHDKYIKRIEDQYLAKEKEIM 184 >gi|282859177|ref|ZP_06268299.1| ribosome recycling factor [Prevotella bivia JCVIHMP010] gi|282587996|gb|EFB93179.1| ribosome recycling factor [Prevotella bivia JCVIHMP010] Length = 186 Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 71/178 (39%), Positives = 110/178 (61%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L KDRM +L +++ +R GR + ++LD V+V +YG V LNQVA V V + R + Sbjct: 8 LSEAKDRMEMAAMYLDEELQRIRAGRANVAILDGVRVSSYGQMVALNQVATVMVPDARTI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK+ + +E+ I +S++G+ P G+++R+ +P+ TEERR LVK + EK+K Sbjct: 68 AIKPWDKKAIKDIEKAIMDSDVGITPENNGEMIRLNLPQPTEERRKELVKQCNKIGEKTK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 I +RNIR D + LKK+ K G SED+ E ++QKI D IK ++ K+KE+M Sbjct: 128 IQIRNIRADIKEILKKAIKDG-LSEDLEKDAETELQKIHDKYIKRVEELLAAKEKEVM 184 >gi|294790919|ref|ZP_06756077.1| ribosome recycling factor [Scardovia inopinata F0304] gi|294458816|gb|EFG27169.1| ribosome recycling factor [Scardovia inopinata F0304] Length = 184 Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 67/184 (36%), Positives = 114/184 (61%), Gaps = 2/184 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ V+D + + +M TI K++ + +RTGR +P++ + + V+ YG+ PL +A + V Sbjct: 1 MSTVVD--DAQKQMNKTIESTKENFVGIRTGRANPALFNGLTVDYYGAPTPLKALATIGV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R L V+ +D A++E+ I +S+LG+NP +G V+ + +PE TEERR VK+AH Sbjct: 59 TDNRTLAVTPFDVSQSAAIEKAIRDSDLGVNPRRDGNVIHVTLPELTEERRKDYVKLAHE 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 +AEK K++VR+IRR + ++ + K G ED L+ D++K T + ID+ K+ Sbjct: 119 FAEKGKVAVRSIRRKAKEDIESATKDGDYGEDEGKRLQADLEKATKKATEEIDTLLHTKE 178 Query: 181 KEIM 184 KEI+ Sbjct: 179 KEIL 182 >gi|111114943|ref|YP_709561.1| ribosome recycling factor [Borrelia afzelii PKo] gi|218249310|ref|YP_002374649.1| ribosome recycling factor [Borrelia burgdorferi ZS7] gi|123145787|sp|Q0SP43|RRF_BORAP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226703255|sp|B7J154|RRF_BORBZ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|110890217|gb|ABH01385.1| ribosome releasing factor [Borrelia afzelii PKo] gi|218164498|gb|ACK74559.1| ribosome recycling factor [Borrelia burgdorferi ZS7] Length = 184 Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 69/173 (39%), Positives = 108/173 (62%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 ++M + L + TLRTGR+S ++ D + ++ +G P+ QV+++ + E R++V+ W Sbjct: 10 EKMSKVLLSLDNEYKTLRTGRISSNIFDKIFIQYHGQRTPITQVSSIRIPEARLVVIQPW 69 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 DK ++ +E+ I S+L +NP +G V+RI VP T ERR +VK A AE+ KIS RN Sbjct: 70 DKTILNKIEQAILNSDLSMNPSSDGSVIRIKVPALTSERRQDIVKHAKKIAEEHKISTRN 129 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 IR+D + +KK K + +ED + + +DIQK TD IK ID+ E K +EIM Sbjct: 130 IRQDLNNKVKKQEKESEITEDSLKRILDDIQKSTDIYIKKIDAILESKIQEIM 182 >gi|254526487|ref|ZP_05138539.1| ribosome recycling factor [Prochlorococcus marinus str. MIT 9202] gi|221537911|gb|EEE40364.1| ribosome recycling factor [Prochlorococcus marinus str. MIT 9202] Length = 182 Score = 134 bits (337), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 68/175 (38%), Positives = 110/175 (62%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 I++ M +I +++ T+RTGR + S+LD V VE YG+ P+ +A ++ ++ + + + Sbjct: 6 IQENMNKSIEATQRNFNTIRTGRANASLLDRVSVEYYGAETPIKSLATISTIDSQTISIQ 65 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 +D + ++E+ I S+LG+ P +G+V+RI VP TEERR K+A YAE+ K+++ Sbjct: 66 PFDISCLQAIEKSISMSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGKVAL 125 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RNIRRD +D KK K G S D +++IQKITD I I++ EK+KEI+ Sbjct: 126 RNIRRDAVDKEKKDEKDGLISIDESRDNQSEIQKITDKYIALIETKLSEKEKEIL 180 >gi|42561130|ref|NP_975581.1| ribosome recycling factor [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|331703586|ref|YP_004400273.1| ribosome recycling factor [Mycoplasma mycoides subsp. capri LC str. 95010] gi|47116994|sp|P61306|RRF_MYCMS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|42492627|emb|CAE77223.1| ribosome recycling factor [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301321457|gb|ADK70100.1| ribosome recycling factor [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] gi|328802141|emb|CBW54295.1| Ribosome recycling factor [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 182 Score = 134 bits (337), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 69/178 (38%), Positives = 112/178 (62%), Gaps = 3/178 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+N + +M +TI + +RTG+ S ++LD V V YGS +PLNQ++ +T EP ++ Sbjct: 6 LKNAELQMKETIDAYVIHLRQIRTGKASGAILDKVMVNYYGSLMPLNQISQITTPEPNLI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D+ ++ IH+++LGLNP+ + ++RIP+ TE+ R LVK H E K Sbjct: 66 IIKPYDRNVITEAVGAIHKADLGLNPVSDATLIRIPIAPLTEDVRKNLVKKVHKELEGYK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 I +RNIRRD +D +KK S+D+++ E+ IQ+ITD IK +D +EK+KE+M Sbjct: 126 IRIRNIRRDAIDEIKKIE---NISKDLISDNEDQIQQITDKFIKQLDDLTKEKEKELM 180 >gi|42525110|ref|NP_970490.1| hypothetical protein Bd3784 [Bdellovibrio bacteriovorus HD100] gi|47116990|sp|P61302|RRF_BDEBA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|39577321|emb|CAE81144.1| rrf [Bdellovibrio bacteriovorus HD100] Length = 186 Score = 134 bits (337), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 68/179 (37%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N + +M T++ L +++ +RTGR SMLD ++V YG+ PL+QVA+++ + + + Sbjct: 8 KNAQAKMEKTLNSLSEELKKVRTGRAQVSMLDGIRVNYYGTPSPLSQVASISTPDAKSFL 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++ W+ ++ +E+ I +S LG+ P+ +G+V+R+ VP+ TEERR L K AE++++ Sbjct: 68 IAPWEVAILKDIEQAIIKSELGMAPMNDGKVIRLKVPDLTEERRKDLAKQVKKIAEEARV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VR RRD D +KK +K SED E DIQK+TD IK +D EEK+K I+ Sbjct: 128 AVRMARRDANDEVKKLQKDKAVSEDEGKKAEADIQKVTDDFIKKVDQVAEEKEKAILTI 186 >gi|188528045|ref|YP_001910732.1| ribosome recycling factor [Helicobacter pylori Shi470] gi|238691946|sp|B2UV20|RRF_HELPS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|188144285|gb|ACD48702.1| ribosome recycling factor [Helicobacter pylori Shi470] Length = 185 Score = 134 bits (337), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 70/174 (40%), Positives = 107/174 (61%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 KD M +I L +D TLR+ +VS ++LD +KV+ YG+ LNQV +V L+ L +S Sbjct: 10 KDLMQKSIQALNRDFSTLRSAKVSVNILDHIKVDYYGTPTTLNQVGSVMSLDATTLQISP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 W+K ++ +ER I E+N+G+NP +G+ +++ P T E+R + K A A EK+K++VR Sbjct: 70 WEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTTEQRKLIAKDAKAMGEKAKVAVR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 NIR+D + +KK K + SED + IQKITD IK ID + K+ I+ Sbjct: 130 NIRQDANNKIKKLEKDKEISEDESKKAQEQIQKITDEAIKTIDESVKNKEDAIL 183 >gi|284992372|ref|YP_003410926.1| ribosome recycling factor [Geodermatophilus obscurus DSM 43160] gi|284065617|gb|ADB76555.1| ribosome recycling factor [Geodermatophilus obscurus DSM 43160] Length = 185 Score = 134 bits (337), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 64/179 (35%), Positives = 113/179 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + ++RM +S ++D+ ++RTGR +PSM + + V+ YG+ P+ Q++++TV E RM Sbjct: 6 LLDAEERMDKALSVAREDLGSVRTGRAAPSMFNKILVDYYGAPTPVPQMSSITVPEARMA 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +D ++++E+ I +S+LG+NP +GQ++R+ P+ TEERR LVK A A E +K Sbjct: 66 VIKPYDTGQLSAIEKAIRDSDLGVNPTNDGQIIRVVFPQLTEERRRDLVKQARAKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +++RN+RR + L + K G+A ED V E ++ +T ID + K+ E++ Sbjct: 126 VAIRNVRRRAKEELDRIAKDGEAGEDDVRRAEKELDDLTAKHTHGIDEAVKNKENELLE 184 >gi|255530032|ref|YP_003090404.1| ribosome recycling factor [Pedobacter heparinus DSM 2366] gi|255343016|gb|ACU02342.1| ribosome recycling factor [Pedobacter heparinus DSM 2366] Length = 187 Score = 134 bits (337), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 74/186 (39%), Positives = 115/186 (61%), Gaps = 3/186 (1%) Query: 1 MNQVI--DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 MN +I LQ+ + M I + ++ +R G+ S MLD + V+ YG+ PL+QVA++ Sbjct: 1 MNDLIKKQLQDAQATMEKAILHCEAELTKIRAGKASAGMLDGIMVDYYGNPTPLSQVASI 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 + R L+V W+K ++ +ER I E+N+G+NP +G V+R+ VP TEERR LVK Sbjct: 61 NTPDARTLIVQPWEKTLLTPIERAIMEANIGINPQNDGIVIRLVVPPLTEERRKDLVKKV 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 AE+ +I+VRNIR+D + +KK K S+D + + E ++QKITD+ I +D E Sbjct: 121 KEEAERGRITVRNIRKDANEKIKKL-KGESVSDDEIKTGEAEVQKITDAYIIKVDKHAEA 179 Query: 179 KKKEIM 184 K+K+IM Sbjct: 180 KEKDIM 185 >gi|317180982|dbj|BAJ58768.1| ribosome recycling factor [Helicobacter pylori F32] Length = 185 Score = 134 bits (337), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 70/174 (40%), Positives = 107/174 (61%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 KD M +I L +D TLR+ +VS ++LD +KV+ YG+ LNQV +V L+ L +S Sbjct: 10 KDLMQKSIQALNRDFSTLRSAKVSVNILDHIKVDYYGTPTALNQVGSVMSLDATTLQISP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 W+K ++ +ER I E+N+G+NP +G+ +++ P T E+R + K A A EK+K++VR Sbjct: 70 WEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTTEQRKLIAKDAKAMGEKAKVAVR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 NIR+D + +KK K + SED + IQKITD IK ID + K+ I+ Sbjct: 130 NIRQDANNKIKKLEKDKEISEDESKKAQEQIQKITDEAIKKIDESVKNKEDAIL 183 >gi|256384088|gb|ACU78658.1| ribosome recycling factor [Mycoplasma mycoides subsp. capri str. GM12] gi|256384920|gb|ACU79489.1| ribosome recycling factor [Mycoplasma mycoides subsp. capri str. GM12] gi|296455804|gb|ADH22039.1| ribosome recycling factor [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 182 Score = 134 bits (337), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 69/178 (38%), Positives = 112/178 (62%), Gaps = 3/178 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+N + +M +TI + +RTG+ S ++LD V V YGS +PLNQ++ +T EP ++ Sbjct: 6 LKNAELQMRETIDAYVIHLRQIRTGKASGAILDKVMVNYYGSLMPLNQISQITTPEPNLI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D+ ++ IH+++LGLNP+ + ++RIP+ TE+ R LVK H E K Sbjct: 66 IIKPYDRNVITEAVGAIHKADLGLNPVSDATLIRIPIAPLTEDVRKNLVKKVHKELEGYK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 I +RNIRRD +D +KK S+D+++ E+ IQ+ITD IK +D +EK+KE+M Sbjct: 126 IRIRNIRRDAIDEIKKIE---NISKDLISDNEDQIQQITDKFIKQLDDLTKEKEKELM 180 >gi|216263749|ref|ZP_03435743.1| ribosome recycling factor [Borrelia afzelii ACA-1] gi|215979793|gb|EEC20615.1| ribosome recycling factor [Borrelia afzelii ACA-1] Length = 184 Score = 134 bits (337), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 69/173 (39%), Positives = 108/173 (62%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 ++M + L + TLRTGR+S ++ D + ++ +G P+ QV+++ + E R++V+ W Sbjct: 10 EKMSKVLLSLDNEYKTLRTGRISSNIFDKIFIQYHGQKTPITQVSSIRIPEARLVVIQPW 69 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 DK ++ +E+ I S+L +NP +G V+RI VP T ERR +VK A AE+ KIS RN Sbjct: 70 DKTILNKIEQAILNSDLSMNPSSDGSVIRIKVPALTSERRQDIVKHAKKIAEEHKISTRN 129 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 IR+D + +KK K + +ED + + +DIQK TD IK ID+ E K +EIM Sbjct: 130 IRQDLNNKVKKQEKESEITEDSLKRILDDIQKSTDIYIKKIDAILESKIQEIM 182 >gi|254797264|ref|YP_003082106.1| ribosome recycling factor [Neorickettsia risticii str. Illinois] gi|254590506|gb|ACT69868.1| ribosome recycling factor [Neorickettsia risticii str. Illinois] Length = 185 Score = 134 bits (337), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 73/178 (41%), Positives = 110/178 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ D++ + D+ +R+G +S S+LD V V + + LNQVA+++V+ +ML Sbjct: 6 IKETNDKLRSSYEVFLSDLKGIRSGSLSVSILDGVIVSTHMGKLRLNQVASLSVVNNKML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V VWDK V +V+ I SNLG+NPIVEG VLR+PVP+ TEERR LVKV Y +++K Sbjct: 66 SVQVWDKSTVGAVKDAILTSNLGMNPIVEGSVLRLPVPDLTEERRKELVKVLKKYGDRAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++VRNIRRD + +K K+ + SED + +L I KI ID +K+ +I+ Sbjct: 126 VAVRNIRRDAVSRIKVLEKAKEISEDDMHALLKKIDKIVSEEDARIDDAVSKKENDIL 183 >gi|313665273|ref|YP_004047144.1| ribosome recycling factor [Mycoplasma leachii PG50] gi|312949294|gb|ADR23890.1| ribosome recycling factor [Mycoplasma leachii PG50] Length = 182 Score = 134 bits (337), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 69/180 (38%), Positives = 112/180 (62%), Gaps = 3/180 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+N + +M +TI + +RTG+ S ++LD V V YGS +PLNQ++ +T EP ++ Sbjct: 6 LKNAELQMKETIDAYVIHLRQIRTGKASGAILDKVMVNYYGSLMPLNQISQITTPEPNLI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D+ ++ IH+++LGLNP+ + ++RIP+ TE+ R LVK H E K Sbjct: 66 IIKPYDRNVITEAVGAIHKADLGLNPVSDATLIRIPIAPLTEDVRKNLVKKVHKELEGYK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I +RNIRRD +D +KK S+D+++ E+ IQ+ITD IK +D +EK+KE+M Sbjct: 126 IRIRNIRRDAIDEIKKIE---NISKDLISDNEDKIQQITDKFIKQLDDLTKEKEKELMKI 182 >gi|15594466|ref|NP_212255.1| ribosome recycling factor [Borrelia burgdorferi B31] gi|226321968|ref|ZP_03797493.1| ribosome recycling factor [Borrelia burgdorferi Bol26] gi|3914875|sp|O51147|RRF_BORBU RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|2688011|gb|AAC66513.1| ribosome releasing factor (frr) [Borrelia burgdorferi B31] gi|226232558|gb|EEH31312.1| ribosome recycling factor [Borrelia burgdorferi Bol26] Length = 184 Score = 134 bits (337), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 69/173 (39%), Positives = 107/173 (61%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 ++M + L + TLRTGR+S ++ D + ++ + P+ QV+++ + E R++V+ W Sbjct: 10 EKMNKVLLSLDNEYKTLRTGRISSNIFDRICIQYHDRRTPITQVSSIRIPEARLVVIQPW 69 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 DK ++ +E+ I S+L +NP +G V+RI VP T ERR +VK A AE+ KIS RN Sbjct: 70 DKSILNKIEQAILNSDLSMNPSNDGSVIRIKVPNLTSERRQEIVKHAKKIAEEHKISTRN 129 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 IR+D + +KK K + +ED + + +DIQK TD IK IDS E K +EIM Sbjct: 130 IRQDLNNKVKKQEKESEITEDCLKRILDDIQKSTDMYIKKIDSILESKIQEIM 182 >gi|83319658|ref|YP_424359.1| ribosome recycling factor [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|123535777|sp|Q2SSA4|RRF_MYCCT RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|83283544|gb|ABC01476.1| ribosome recycling factor [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 182 Score = 134 bits (337), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 69/178 (38%), Positives = 112/178 (62%), Gaps = 3/178 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+N + +M +TI + +RTG+ S ++LD V V YGS +PLNQ++ +T EP ++ Sbjct: 6 LKNAELQMKETIDAYVIHLRQIRTGKASGAILDKVMVNYYGSLMPLNQISQITTPEPNLI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D+ ++ IH+++LGLNPI + ++RIP+ TE+ R LVK H E K Sbjct: 66 IIKPYDRNVITEAVGAIHKADLGLNPISDATLIRIPIAPLTEDVRKNLVKKVHKELEGYK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 I +RNIRRD +D +KK S+D+++ E+ IQ+ITD IK +D +EK++E+M Sbjct: 126 IRIRNIRRDAIDEIKKVE---NISKDLISDNEDKIQQITDKFIKQLDDLTKEKERELM 180 >gi|123968112|ref|YP_001008970.1| ribosome recycling factor [Prochlorococcus marinus str. AS9601] gi|166230817|sp|A2BQ02|RRF_PROMS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|123198222|gb|ABM69863.1| Ribosome recycling factor [Prochlorococcus marinus str. AS9601] Length = 182 Score = 134 bits (337), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 68/175 (38%), Positives = 110/175 (62%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 I++ M +I +++ T+RTGR + S+LD V VE YG+ P+ +A ++ ++ + + + Sbjct: 6 IQENMNKSIEATQRNFNTIRTGRANASLLDRVSVEYYGAETPIKSLATISTVDSQTISIQ 65 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 +D + ++E+ I S+LG+ P +G+V+RI VP TEERR K+A YAE+ K+++ Sbjct: 66 PFDISCLQAIEKSISMSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGKVAL 125 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RNIRRD +D KK K G S D +++IQKITD I I++ EK+KEI+ Sbjct: 126 RNIRRDAVDKEKKDEKDGLISIDESRDNQSEIQKITDKYIALIETKLSEKEKEIL 180 >gi|223889153|ref|ZP_03623742.1| ribosome recycling factor [Borrelia burgdorferi 64b] gi|223885402|gb|EEF56503.1| ribosome recycling factor [Borrelia burgdorferi 64b] Length = 184 Score = 134 bits (337), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 69/173 (39%), Positives = 107/173 (61%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 ++M + L + TLRTGR+S ++ D + ++ + P+ QV+++ + E R++V+ W Sbjct: 10 EKMNKVLLSLDNEYKTLRTGRISSNIFDRICIQYHDRRTPITQVSSIRIPEARLVVIQPW 69 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 DK ++ +E+ I S+L +NP +G V+RI VP T ERR +VK A AE+ KIS RN Sbjct: 70 DKSILNKIEQAILNSDLSMNPSNDGSVIRIKVPNLTSERRQEIVKHAKKIAEEHKISTRN 129 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 IR+D + +KK K + +ED + + +DIQK TD IK IDS E K +EIM Sbjct: 130 IRQDLNNKVKKQEKESEITEDCLKRILDDIQKSTDMYIKKIDSILESKIQEIM 182 >gi|154175389|ref|YP_001409189.1| ribosome recycling factor [Campylobacter curvus 525.92] gi|166230772|sp|A7H147|RRF_CAMC5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|112803518|gb|EAU00862.1| ribosome recycling factor [Campylobacter curvus 525.92] Length = 185 Score = 134 bits (336), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 70/184 (38%), Positives = 111/184 (60%), Gaps = 2/184 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N V Q KD I+ LK+D TLRTG+V+ S+LD V ++ YGS PLNQVA V Sbjct: 2 LNDVYAAQ--KDGCEKAIASLKRDFTTLRTGKVNISILDHVMIDYYGSMTPLNQVATVLA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + + ++ W+K M+ ++ I +N+G+NP +G+ +++ P T E+R K A A Sbjct: 60 SDASTISITPWEKSMIKTISGAIQAANIGVNPNSDGECVKLFFPPMTIEQRQENAKHAKA 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 EK+K+SVRN+R+D D +KK K +ED ++++QKITD + ID+ +EK+ Sbjct: 120 MGEKAKVSVRNVRKDANDEVKKLEKDKAITEDESKKGQDEVQKITDGYVAKIDALVKEKE 179 Query: 181 KEIM 184 E++ Sbjct: 180 AELL 183 >gi|207091619|ref|ZP_03239406.1| ribosome recycling factor [Helicobacter pylori HPKX_438_AG0C1] Length = 185 Score = 134 bits (336), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 70/174 (40%), Positives = 107/174 (61%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 KD M +I L +D TLR+ +VS ++LD +KV+ YG+ LNQV +V L+ L +S Sbjct: 10 KDLMQKSIQALNRDFSTLRSAKVSVNILDHIKVDYYGTPTALNQVGSVMSLDATTLQISP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 W+K M+ +ER I E+N+G+NP +G+ +++ P T E+R + K A A EK+K++VR Sbjct: 70 WEKNMLKEIERSIQEANIGVNPNNDGETIKLFFPPMTTEQRKLIAKDAKAMGEKAKVAVR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 N R+D + +KK K + SED + IQKITD +IK ID + K+ I+ Sbjct: 130 NTRQDANNKVKKLEKDKEISEDESKKAQEQIQKITDESIKKIDESVKNKEDAIL 183 >gi|260899614|ref|ZP_05908009.1| ribosome recycling factor [Vibrio parahaemolyticus AQ4037] gi|308110171|gb|EFO47711.1| ribosome recycling factor [Vibrio parahaemolyticus AQ4037] Length = 156 Score = 134 bits (336), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 65/145 (44%), Positives = 95/145 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK ++ +RTGR PS+L + VE YG+ PLNQVANV + R L Sbjct: 7 KDAQERMDKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAATPLNQVANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DKE+ VE+ I S+LGLNP+ G ++R+P+P TEERR LVK+ AE ++ Sbjct: 67 ITVFDKELTQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASED 152 +VRNIRRD + LK K + SED Sbjct: 127 AVRNIRRDANNDLKALLKDKEISED 151 >gi|145224703|ref|YP_001135381.1| ribosome recycling factor [Mycobacterium gilvum PYR-GCK] gi|315445033|ref|YP_004077912.1| ribosome recycling factor [Mycobacterium sp. Spyr1] gi|189044062|sp|A4TC77|RRF_MYCGI RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|145217189|gb|ABP46593.1| ribosome recycling factor [Mycobacterium gilvum PYR-GCK] gi|315263336|gb|ADU00078.1| ribosome recycling factor [Mycobacterium sp. Spyr1] Length = 185 Score = 134 bits (336), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 61/178 (34%), Positives = 108/178 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++M +S + D+ ++RTGR +P M + + ++ YG+ P+ Q++++ V E RM+ Sbjct: 6 LFDAEEKMEKAVSVARDDLASIRTGRANPGMFNRIHIDYYGASTPITQLSSINVPEARMV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ ++ + +E I S+LG+NP +G ++R+ +P+ TEERR LVK A + E +K Sbjct: 66 VIKPYEANQLRPIEDAIRNSDLGVNPTNDGNIIRVSIPQLTEERRRDLVKQAKSKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +S+RNIRR M+ L + +K G A ED V E D+ K T +D + K+ E++ Sbjct: 126 VSIRNIRRKAMEELARIKKDGDAGEDDVTRAEKDLDKSTHQYTSQVDDLVKHKEGELL 183 >gi|33519739|ref|NP_878571.1| ribosome recycling factor [Candidatus Blochmannia floridanus] gi|39932111|sp|Q7VRE3|RRF_BLOFL RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|33504084|emb|CAD83345.1| ribosome recycling factor [Candidatus Blochmannia floridanus] Length = 188 Score = 134 bits (336), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 69/188 (36%), Positives = 111/188 (59%), Gaps = 2/188 (1%) Query: 1 MNQVID--LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 M+ +ID +++ M I K ++ + GR+SP +L +K+E YG PL Q+ N Sbjct: 1 MSDIIDDFQKDVTINMQKCIDNFKININKIHVGRISPDILSFIKIEYYGVITPLCQLTNT 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 V +PR L+++V+D M+ +E+ I ESNLG P+ G +R+ P TE RR +L+K+ Sbjct: 61 VVEQPRTLIITVFDSSMIKFIEKAILESNLGCTPVSTGNTIRVTFPTLTESRRYSLIKMV 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 + +EKSK+ +RNIRR D LK ++ + ++D +N+IQ +TD IK I +E Sbjct: 121 RSESEKSKVLIRNIRRVSNDKLKTFLRNKEINKDNEHYFQNEIQNLTDIWIKKIILITKE 180 Query: 179 KKKEIMHF 186 K+ E+M F Sbjct: 181 KELELMKF 188 >gi|270294558|ref|ZP_06200760.1| ribosome recycling factor [Bacteroides sp. D20] gi|270276025|gb|EFA21885.1| ribosome recycling factor [Bacteroides sp. D20] Length = 200 Score = 134 bits (336), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 74/178 (41%), Positives = 103/178 (57%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++ M I +L + + +R G+ +LD ++V++YGS VP+N VA VT + R + Sbjct: 22 LDEAQESMDMAIMYLDEALAHIRAGKADIRLLDGIRVDSYGSMVPINNVAAVTTPDARSI 81 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK M +E+ I +S+LG+ P G+++RI +P TEERR L K E +K Sbjct: 82 AIKPWDKSMFRVIEKAIIDSSLGIMPENNGEIIRIGIPPLTEERRKQLAKQCKGEGETAK 141 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +SVRN RRD +D LKKS K G A ED E +QKI D IK ID K KEIM Sbjct: 142 VSVRNARRDAIDALKKSVKDGLA-EDAQKGGEEKLQKIHDKFIKQIDDMLAAKDKEIM 198 >gi|160891315|ref|ZP_02072318.1| hypothetical protein BACUNI_03764 [Bacteroides uniformis ATCC 8492] gi|317481183|ref|ZP_07940258.1| ribosome recycling factor [Bacteroides sp. 4_1_36] gi|156859536|gb|EDO52967.1| hypothetical protein BACUNI_03764 [Bacteroides uniformis ATCC 8492] gi|316902679|gb|EFV24558.1| ribosome recycling factor [Bacteroides sp. 4_1_36] Length = 186 Score = 134 bits (336), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 74/178 (41%), Positives = 103/178 (57%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++ M I +L + + +R G+ +LD ++V++YGS VP+N VA VT + R + Sbjct: 8 LDEAQESMDMAIMYLDEALAHIRAGKADIRLLDGIRVDSYGSMVPINNVAAVTTPDARSI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK M +E+ I +S+LG+ P G+++RI +P TEERR L K E +K Sbjct: 68 AIKPWDKSMFRVIEKAIIDSSLGIMPENNGEIIRIGIPPLTEERRKQLAKQCKGEGETAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +SVRN RRD +D LKKS K G A ED E +QKI D IK ID K KEIM Sbjct: 128 VSVRNARRDAIDALKKSVKDGLA-EDAQKGGEEKLQKIHDKFIKQIDDMLAAKDKEIM 184 >gi|332880823|ref|ZP_08448494.1| ribosome recycling factor [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681206|gb|EGJ54132.1| ribosome recycling factor [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 186 Score = 134 bits (336), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 71/178 (39%), Positives = 105/178 (58%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + +L + + +R G+ +LD ++V++YGS VP+N VA V + R + Sbjct: 8 LDEAQEKMDMAVMYLDEALAHIRAGKADIRLLDGIRVDSYGSMVPINNVAAVNTPDARSI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK M +E+ I +S LG+ P G+++RI +P TEERR L K A E +K Sbjct: 68 AIKPWDKNMFRVIEKAIIDSELGIMPENNGEIIRIGIPPLTEERRKQLAKQCKAECETAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +SVRN RRD +D LKK+ K G A ED + E +QK+ D IK ID + K KEIM Sbjct: 128 VSVRNARRDAIDALKKAVKDGMA-EDEQKNSEAKLQKVHDKYIKQIDDLYAAKDKEIM 184 >gi|329957499|ref|ZP_08297974.1| ribosome recycling factor [Bacteroides clarus YIT 12056] gi|328522376|gb|EGF49485.1| ribosome recycling factor [Bacteroides clarus YIT 12056] Length = 186 Score = 134 bits (336), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 72/178 (40%), Positives = 105/178 (58%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + +L++ + +R G+ +LD ++V++YGS VP+N VA VT + R + Sbjct: 8 LDEAQEKMDMAVMYLEESLAHIRAGKADVRLLDGIRVDSYGSMVPINNVAAVTTPDARSI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK M +E+ I +S+LG+ P G+++RI +P TEERR L K +E +K Sbjct: 68 AIKPWDKSMFRVIEKAIIDSDLGIMPENNGEIIRIGIPPLTEERRKQLAKQCKNESETAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +SVRN RRD +D KKS K G A ED E +QKI D IK ID K KEIM Sbjct: 128 VSVRNARRDAIDAFKKSVKEGLA-EDAQKGGEEKLQKIHDKYIKQIDDMLAAKDKEIM 184 >gi|33861078|ref|NP_892639.1| ribosome recycling factor [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|39932081|sp|Q7V2F9|RRF_PROMP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|33639810|emb|CAE18980.1| Ribosome recycling factor [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 182 Score = 134 bits (336), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 66/177 (37%), Positives = 111/177 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q I+ M ++ +++ T+RTGR + S+LD + VE YG+ P+ +A+++ ++ + + Sbjct: 4 QEIQSSMNKSVEATQRNFNTIRTGRANASLLDRISVEYYGAETPIKSLASISTIDSQTIS 63 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +D + ++E+ I S+LG+ P +G+V+RI VP TEERR K+A YAE+ K+ Sbjct: 64 IQPFDISSLQTIEKAISVSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGKV 123 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++RNIRRD +D KK K G S+D+ + +IQK TD I I++ EK+KEI+ Sbjct: 124 ALRNIRRDAVDKEKKDEKEGLISKDVSRDNQLEIQKFTDKYISLIETKLSEKEKEIL 180 >gi|157164672|ref|YP_001467726.1| ribosome recycling factor [Campylobacter concisus 13826] gi|166230771|sp|A7ZG18|RRF_CAMC1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|112800347|gb|EAT97691.1| ribosome recycling factor [Campylobacter concisus 13826] Length = 185 Score = 134 bits (336), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 68/186 (36%), Positives = 113/186 (60%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ D Q K+ I+ LK+D TLRTG+V+ ++LD V V+ YGS PLNQVA V Sbjct: 2 LNKIYDTQ--KEGCEKAIASLKRDFTTLRTGKVNINILDNVMVDYYGSPTPLNQVATVLT 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + + ++ W+K M+ ++ I +N+G+NP +G+ +++ P T E+R K A A Sbjct: 60 SDASTIAITPWEKSMIKAISSAIQAANIGVNPNSDGESVKLFFPPMTVEQRQENAKHAKA 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 EK+K+S+RN+R+D D +KK K +ED ++++QKITD+ ID+ +EK+ Sbjct: 120 MGEKAKVSIRNVRKDANDEVKKLEKDKAITEDESKKGQDEVQKITDTYTAKIDTLVKEKE 179 Query: 181 KEIMHF 186 E++ Sbjct: 180 AELLKI 185 >gi|297559222|ref|YP_003678196.1| ribosome recycling factor [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843670|gb|ADH65690.1| ribosome recycling factor [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 185 Score = 134 bits (336), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 64/179 (35%), Positives = 109/179 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M ++ K+D T+RTGR +P+ + + V+ YG+ P+NQ+A+ +V EPRM+ Sbjct: 6 LLEAEEKMEKAVTVAKEDFATIRTGRPTPATFNKITVDYYGARTPINQLASFSVPEPRMV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+S +D + I S+LG+NP +GQV+R+ PE +EERR VKVA AE SK Sbjct: 66 VISPFDVNSRTDIINAIRNSDLGVNPSDDGQVIRVVFPELSEERRKEYVKVARTKAEDSK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +S+RN+RR D +K+ KSG ED + ++ +++ + ++D + K+ E++ Sbjct: 126 VSIRNVRRRAKDTFEKAVKSGDIGEDEAHRAQAELDELSSKYVASVDELLKHKESELLE 184 >gi|289643662|ref|ZP_06475775.1| ribosome recycling factor [Frankia symbiont of Datisca glomerata] gi|289506553|gb|EFD27539.1| ribosome recycling factor [Frankia symbiont of Datisca glomerata] Length = 185 Score = 133 bits (335), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 61/178 (34%), Positives = 111/178 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M ++ K+D +RTGR++PS+ V V+ YG+ P+NQ+A+ + EPRM+ Sbjct: 6 LLEAEEKMDKAVAVAKEDFANIRTGRITPSVFSKVLVDYYGAPTPVNQLASFHIPEPRMV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK +A++E+ + +S+LG+NP +G ++R PE +E+RR L KVA AE+++ Sbjct: 66 IITPYDKGSLAAIEKAVRDSDLGVNPSNDGTIIRCLFPELSEQRRRDLAKVARTKAEEAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 IS+RN+RR D + + + G+A ED E D+ + T + +D K+ E++ Sbjct: 126 ISIRNVRRHSKDAIDRIVRDGEAGEDEGRRGEKDLDEATHRYVSQVDELLRHKESELL 183 >gi|167765030|ref|ZP_02437151.1| hypothetical protein BACSTE_03424 [Bacteroides stercoris ATCC 43183] gi|167697699|gb|EDS14278.1| hypothetical protein BACSTE_03424 [Bacteroides stercoris ATCC 43183] Length = 186 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 72/178 (40%), Positives = 105/178 (58%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + +L++ + +R G+ +LD ++V++YGS VP+N VA VT + R + Sbjct: 8 LDEAQEKMDMAVMYLEESLAHIRAGKADVRLLDGIRVDSYGSMVPINNVAAVTTPDARSI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK M +E+ I +S+LG+ P G+++RI +P TEERR L K +E +K Sbjct: 68 AIKPWDKSMFRIIEKAIIDSDLGIMPENNGEIIRIGIPPLTEERRKQLAKQCKNESETAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +SVRN RRD +D KKS K G A ED E +QKI D IK ID K KEIM Sbjct: 128 VSVRNARRDAIDAFKKSVKEGLA-EDAQKGGEEKLQKIHDKYIKQIDDMLAAKDKEIM 184 >gi|254508643|ref|ZP_05120758.1| ribosome recycling factor [Vibrio parahaemolyticus 16] gi|219548400|gb|EED25410.1| ribosome recycling factor [Vibrio parahaemolyticus 16] Length = 151 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 66/150 (44%), Positives = 95/150 (63%) Query: 36 SMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVE 95 S+L + VE YG+ PLNQVANV + R L ++V+DKE+ VE+ I S+LGLNP+ Sbjct: 1 SLLAGISVEYYGAPTPLNQVANVVAEDARTLAITVFDKELTQKVEKAIMMSDLGLNPMSA 60 Query: 96 GQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVA 155 G ++R+P+P TEERR LVK+ AE ++++RNIRRD LK K + SED Sbjct: 61 GTIIRVPLPPLTEERRKDLVKIVRGEAEGGRVAIRNIRRDANGELKALLKDKEISEDEDR 120 Query: 156 SLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 + +IQK+TD+ +K +D K+KE+M Sbjct: 121 KGQEEIQKLTDAAVKQVDEVLAAKEKELME 150 >gi|313836793|gb|EFS74507.1| ribosome recycling factor [Propionibacterium acnes HL037PA2] gi|314929799|gb|EFS93630.1| ribosome recycling factor [Propionibacterium acnes HL044PA1] gi|314972228|gb|EFT16325.1| ribosome recycling factor [Propionibacterium acnes HL037PA3] gi|328907655|gb|EGG27419.1| ribosome recycling factor [Propionibacterium sp. P08] Length = 184 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 64/180 (35%), Positives = 111/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +++ + +MG + +++ +RTGR +P+M + + VE YG+ PL Q+A+ V E R + Sbjct: 5 IKDAEKKMGSAVGHAREEFAAIRTGRANPAMFNKLMVEYYGTPTPLQQLASFQVPEARTV 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK V VE+ I +S+LG+NP +G V+R +P TEERR +K+A AE+ + Sbjct: 65 LIAPFDKSCVNDVEKAIRDSDLGVNPSNDGNVVRCVLPALTEERRKEYIKMAKTKAEEGR 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I+VRNIRR D +KK K + SED + LE ++ ++T ++ ID + K+ E++ Sbjct: 125 IAVRNIRRASNDVVKKQEKDKEISEDEMTRLEKELDQVTRKYVEQIDELLKSKESELLEI 184 >gi|195941859|ref|ZP_03087241.1| ribosome releasing factor (frr) [Borrelia burgdorferi 80a] gi|216264175|ref|ZP_03436167.1| ribosome recycling factor [Borrelia burgdorferi 156a] gi|221217383|ref|ZP_03588854.1| ribosome recycling factor [Borrelia burgdorferi 72a] gi|224532925|ref|ZP_03673535.1| ribosome recycling factor [Borrelia burgdorferi WI91-23] gi|224533972|ref|ZP_03674556.1| ribosome recycling factor [Borrelia burgdorferi CA-11.2a] gi|225549303|ref|ZP_03770276.1| ribosome recycling factor [Borrelia burgdorferi 94a] gi|225549848|ref|ZP_03770810.1| ribosome recycling factor [Borrelia burgdorferi 118a] gi|226320687|ref|ZP_03796245.1| ribosome recycling factor [Borrelia burgdorferi 29805] gi|215980648|gb|EEC21455.1| ribosome recycling factor [Borrelia burgdorferi 156a] gi|221192661|gb|EEE18877.1| ribosome recycling factor [Borrelia burgdorferi 72a] gi|224512124|gb|EEF82515.1| ribosome recycling factor [Borrelia burgdorferi WI91-23] gi|224512808|gb|EEF83175.1| ribosome recycling factor [Borrelia burgdorferi CA-11.2a] gi|225369539|gb|EEG98990.1| ribosome recycling factor [Borrelia burgdorferi 118a] gi|225370161|gb|EEG99601.1| ribosome recycling factor [Borrelia burgdorferi 94a] gi|226233903|gb|EEH32626.1| ribosome recycling factor [Borrelia burgdorferi 29805] gi|312148392|gb|ADQ31051.1| ribosome recycling factor [Borrelia burgdorferi JD1] gi|312149152|gb|ADQ29223.1| ribosome recycling factor [Borrelia burgdorferi N40] Length = 184 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 69/173 (39%), Positives = 107/173 (61%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 ++M + L + TLRTGR+S ++ D + ++ + P+ QV+++ + E R++V+ W Sbjct: 10 EKMNKVLLSLDNEYKTLRTGRISSNIFDRICIQYHDRRTPITQVSSIRIPEARLVVIQPW 69 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 DK ++ +E+ I S+L +NP +G V+RI VP T ERR +VK A AE+ KIS RN Sbjct: 70 DKSILNKIEQAILNSDLSMNPSNDGSVIRIKVPNLTSERRQEIVKHAKKIAEEHKISTRN 129 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 IR+D + +KK K + +ED + + +DIQK TD IK IDS E K +EIM Sbjct: 130 IRQDLNNKVKKQEKESEITEDSLKRILDDIQKSTDMYIKKIDSILESKIQEIM 182 >gi|254421634|ref|ZP_05035352.1| ribosome recycling factor [Synechococcus sp. PCC 7335] gi|196189123|gb|EDX84087.1| ribosome recycling factor [Synechococcus sp. PCC 7335] Length = 185 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 67/181 (37%), Positives = 107/181 (59%) Query: 3 QVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLE 62 ++ DL ++ M + K+ T+RTGR S S+LD + V+ YGS L +AN+T + Sbjct: 2 KLADLGEVESAMQKAVESTKRAFNTIRTGRASASLLDRIMVDYYGSPTSLKSLANITTPD 61 Query: 63 PRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 L++ +D V + + I S++GL P +G ++R+ +P T ERR K+A YA Sbjct: 62 ASTLMIQAFDPSSVQLIAKAISMSDVGLVPNTDGALIRLNIPPLTTERRQEFAKLAGKYA 121 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 E+ ++SVRN+RRDG+D KK K G+ SED +++++QK+TD K ID +K+K Sbjct: 122 EEGRVSVRNVRRDGIDLAKKQEKDGEISEDESRDMQDEVQKLTDKYTKQIDEALADKEKA 181 Query: 183 I 183 I Sbjct: 182 I 182 >gi|108563625|ref|YP_627941.1| ribosome recycling factor [Helicobacter pylori HPAG1] gi|123246899|sp|Q1CS05|RRF_HELPH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|107837398|gb|ABF85267.1| ribosome releasing factor [Helicobacter pylori HPAG1] Length = 185 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 69/174 (39%), Positives = 107/174 (61%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 KD M ++ L +D TLR+ +VS ++LD +KV+ YG+ LNQV +V L+ L +S Sbjct: 10 KDLMQKSVQALNRDFSTLRSAKVSVNILDHIKVDYYGTPTALNQVGSVMSLDATTLQISP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 W+K ++ +ER I E+N+G+NP +G+ +++ P T E+R + K A A EK+K++VR Sbjct: 70 WEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTTEQRKLIAKDAKAMGEKAKVAVR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 NIR+D + +KK K + SED + IQKITD IK ID + K+ I+ Sbjct: 130 NIRQDANNKVKKLEKDKEISEDESKKAQEQIQKITDEAIKKIDESVKNKEDAIL 183 >gi|78778906|ref|YP_397018.1| ribosome recycling factor [Prochlorococcus marinus str. MIT 9312] gi|123554500|sp|Q31C13|RRF_PROM9 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|78712405|gb|ABB49582.1| ribosome recycling factor [Prochlorococcus marinus str. MIT 9312] Length = 182 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 67/177 (37%), Positives = 111/177 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q I++ M +I +++ T+RTGR + S+LD + VE YG+ P+ +A ++ ++ + + Sbjct: 4 QEIQENMNKSIEATQRNFNTIRTGRANASLLDRISVEYYGAETPIKSLATISTVDSQTIS 63 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +D + ++E+ I S+LG+ P +G+V+RI VP TEERR K+A YAE+ K+ Sbjct: 64 IQPFDISCLQAIEKSISMSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGKV 123 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++RNIRRD +D KK K G S D +++IQKIT+ I I++ EK+KEI+ Sbjct: 124 ALRNIRRDAVDKEKKDEKDGLISIDESRDNQSEIQKITNKFIALIETKLSEKEKEIL 180 >gi|88607028|ref|YP_504740.1| ribosome recycling factor [Anaplasma phagocytophilum HZ] gi|88598091|gb|ABD43561.1| ribosome recycling factor [Anaplasma phagocytophilum HZ] Length = 184 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 72/177 (40%), Positives = 109/177 (61%), Gaps = 1/177 (0%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q ++RM T + D+ +RTGRVS S+LD + V YG+ V LN V++++V R L+ Sbjct: 8 QYAQERMDKTYAMFLNDISGIRTGRVSASLLDGISVSYYGNKVKLNTVSSISV-NGRTLL 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 VS+WD ++ V+ I SN+G E +R+ VPE T + R LVK+ + AE+SK+ Sbjct: 67 VSLWDASILGEVKSAIEASNMGFGMTCESSTVRLVVPELTNDVRKNLVKMLNKLAEESKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 S+RNIRRD ++ LK + + + SED + + +IQKITDS IK I + K+ EI+ Sbjct: 127 SIRNIRRDAIERLKSLQDNKEISEDDMHGVSAEIQKITDSFIKKIADAYTSKESEIL 183 >gi|30249677|ref|NP_841747.1| ribosome recycling factor [Nitrosomonas europaea ATCC 19718] gi|34924908|sp|Q82TZ8|RRF_NITEU RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|30180714|emb|CAD85626.1| Ribosome recycling factor [Nitrosomonas europaea ATCC 19718] Length = 185 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 64/172 (37%), Positives = 108/172 (62%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M ++ LK D +R+GR +LD + V+ YG+ P+ Q+ANVT+ + R + + WD Sbjct: 12 KMQKSLDALKVDFSKVRSGRPHTGLLDHIMVDYYGTPTPIKQLANVTLADARTIGIIPWD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K++ +++E+ I +S+LGLNP+ ++R+P+P TEERR L K+ AE +++++RNI Sbjct: 72 KKIFSAIEKAIRDSDLGLNPMTVSDMVRVPMPPLTEERRKDLTKIVKTEAEAARVAMRNI 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD HLK+ K +ED +++IQK+TD I +D + K+ E+M Sbjct: 132 RRDANAHLKELLKDKLIAEDEDRRAQDEIQKLTDRYIAEVDKLLQTKEAELM 183 >gi|254779799|ref|YP_003057905.1| ribosome recycling factor [Helicobacter pylori B38] gi|254001711|emb|CAX29942.1| Ribosome recycling factor (Ribosome releasing factor) (RRF) [Helicobacter pylori B38] gi|317009940|gb|ADU80520.1| ribosome recycling factor [Helicobacter pylori India7] Length = 185 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 69/174 (39%), Positives = 107/174 (61%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 KD M +I L +D TLR+ +VS ++LD +KV+ YG+ LNQV +V L+ L +S Sbjct: 10 KDLMQKSIQALNRDFSTLRSAKVSVNILDHIKVDYYGTPTALNQVGSVMSLDATTLQISP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 W+K ++ +ER I E+N+G+NP +G+ +++ P T ++R + K A A EK+K++VR Sbjct: 70 WEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTTDQRKLIAKDAKAMGEKAKVAVR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 NIR+D + +KK K + SED + IQKITD IK ID + K+ I+ Sbjct: 130 NIRQDANNQVKKLEKDKEISEDESKKAQEQIQKITDEAIKKIDESVKNKEDAIL 183 >gi|317178450|dbj|BAJ56238.1| ribosome recycling factor [Helicobacter pylori F30] Length = 185 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 69/174 (39%), Positives = 107/174 (61%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 KD M +I L +D TLR+ +VS ++LD +KV+ YG+ LNQV +V L+ L +S Sbjct: 10 KDLMQKSIQALNRDFSTLRSAKVSVNILDHIKVDYYGTPTALNQVGSVMSLDATTLQISP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 W+K ++ +ER I E+N+G+NP +G+ +++ P T ++R + K A A EK+K++VR Sbjct: 70 WEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTTDQRKLIAKDAKAMGEKAKVAVR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 NIR+D + +KK K + SED + IQKITD IK ID + K+ I+ Sbjct: 130 NIRQDANNKIKKLEKDKEISEDESKKAQEQIQKITDEAIKTIDESVKNKEDAIL 183 >gi|312194965|ref|YP_004015026.1| ribosome recycling factor [Frankia sp. EuI1c] gi|311226301|gb|ADP79156.1| ribosome recycling factor [Frankia sp. EuI1c] Length = 185 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 62/178 (34%), Positives = 111/178 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M ++ K D +RTGR++PS+ + V+ YG+ P+ Q+A+ + EPRM+ Sbjct: 6 LLEAEEKMDKAVTVAKDDFANIRTGRITPSVFSKILVDYYGAPTPVQQLASFHIPEPRMV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK ++++E+ + +S+LG+NP +G ++R+ PE +E+RR LVKVA AE +K Sbjct: 66 IITPFDKSSLSAIEKAVRDSDLGVNPSNDGTIIRVVFPELSEQRRRDLVKVARGKAEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 IS+RN+RR + L K K G A ED E D+++ T + ID + K+ +++ Sbjct: 126 ISIRNVRRHAKEALDKIVKDGDAGEDEGRRAEKDLEESTHRYVAQIDELLKAKESDLL 183 >gi|261839975|gb|ACX99740.1| ribosome recycling factor [Helicobacter pylori 52] Length = 185 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 69/174 (39%), Positives = 107/174 (61%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 KD M +I L +D TLR+ +VS ++LD +KV+ YG+ LNQV +V L+ L +S Sbjct: 10 KDLMQKSIQALNRDFSTLRSAKVSVNILDHIKVDYYGTPTALNQVGSVMSLDATTLQISP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 W+K ++ +ER I E+N+G+NP +G+ +++ P T ++R + K A A EK+K++VR Sbjct: 70 WEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTTDQRKLIAKDAKAMGEKAKVAVR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 NIR+D + +KK K + SED + IQKITD IK ID + K+ I+ Sbjct: 130 NIRQDANNKIKKLEKDKEISEDESKKAQEQIQKITDEAIKTIDESVKNKEDAIL 183 >gi|157412937|ref|YP_001483803.1| ribosome recycling factor [Prochlorococcus marinus str. MIT 9215] gi|166991558|sp|A8G3N6|RRF_PROM2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|157387512|gb|ABV50217.1| Ribosome recycling factor [Prochlorococcus marinus str. MIT 9215] Length = 182 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 67/175 (38%), Positives = 110/175 (62%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 I++ M +I +++ T+RTGR + S+LD V V+ YG+ P+ +A ++ ++ + + + Sbjct: 6 IQENMNKSIEATQRNFNTIRTGRANASLLDRVSVDYYGAETPIKSLATISTIDSQTISIQ 65 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 +D + ++E+ I S+LG+ P +G+V+RI VP TEERR K+A YAE+ K+++ Sbjct: 66 PFDISCLQAIEKSISMSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGKVAL 125 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RNIRRD +D KK K G S D +++IQKITD I I++ EK+KEI+ Sbjct: 126 RNIRRDAVDKEKKDEKDGLISIDESRDNQSEIQKITDKYIALIETKLSEKEKEIL 180 >gi|317011456|gb|ADU85203.1| ribosome recycling factor [Helicobacter pylori SouthAfrica7] Length = 185 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 69/174 (39%), Positives = 108/174 (62%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 KD M +I L ++ TLR+ +VS ++LD +KV+ YG+ LNQV +V L+ L +S Sbjct: 10 KDLMQKSIQALSREFSTLRSAKVSVNILDHIKVDYYGTPTALNQVGSVMSLDATTLQISP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 W+K ++ +ER I E+N+G+NP +G+ +++ P T E+R + K A A EK+K++VR Sbjct: 70 WEKNLLKEIERAIQEANIGVNPNNDGETIKLFFPPMTTEQRKLIAKDAKAMGEKAKVAVR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 NIR+D + +KK K + SED ++ IQKITD IK ID + K+ I+ Sbjct: 130 NIRQDANNKVKKLEKDKEISEDESKKAQDQIQKITDEAIKKIDESVKNKEDAIL 183 >gi|306822703|ref|ZP_07456081.1| ribosome recycling factor [Bifidobacterium dentium ATCC 27679] gi|304554248|gb|EFM42157.1| ribosome recycling factor [Bifidobacterium dentium ATCC 27679] Length = 186 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 69/185 (37%), Positives = 108/185 (58%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 MN + K +M ++ K++ +RTGR +P++L+ + V+ YG+ PL VA + V Sbjct: 1 MNMANIVDQAKAQMAKSVESTKENFSGIRTGRANPALLNGITVDYYGAPTPLKAVATIGV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPR L V+ +D +VE+ + +S+LG +P +G V+R+ +PE TEERR VK+A Sbjct: 61 PEPRTLSVTPFDASQANAVEKALRDSDLGASPRRDGNVIRLTMPELTEERRKEYVKLAKG 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE K++VRNIRR + + K+ K G ED L ++ K+T T +D+ E K+ Sbjct: 121 KAEDGKVAVRNIRRKTKESIDKAIKDGDMGEDEGDRLLKELDKVTKQTTDELDTLLEAKQ 180 Query: 181 KEIMH 185 KEIM Sbjct: 181 KEIME 185 >gi|317182505|dbj|BAJ60289.1| ribosome recycling factor [Helicobacter pylori F57] Length = 185 Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 69/174 (39%), Positives = 107/174 (61%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 KD M +I L +D TLR+ +VS ++LD +KV+ YG+ LNQV +V L+ L +S Sbjct: 10 KDLMQKSIQALNRDFSTLRSAKVSVNILDHIKVDYYGTPTALNQVGSVMSLDATTLQISP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 W+K ++ +ER I E+N+G+NP +G+ +++ P T ++R + K A A EK+K++VR Sbjct: 70 WEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTTDQRKLIAKDAKAMGEKAKVAVR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 NIR+D + +KK K + SED + IQKITD IK ID + K+ I+ Sbjct: 130 NIRQDANNKIKKLEKDKEISEDESKKAQEQIQKITDEAIKTIDESVKNKEYAIL 183 >gi|111225137|ref|YP_715931.1| ribosome recycling factor [Frankia alni ACN14a] gi|123043981|sp|Q0RDQ6|RRF_FRAAA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|111152669|emb|CAJ64410.1| ribosome releasing factor [Frankia alni ACN14a] Length = 185 Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 60/178 (33%), Positives = 113/178 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++M +S K+D +RTGR++P++ + V+ YG+ P+ Q+A+ + EPRM+ Sbjct: 6 LLDAEEKMEKAVSVAKEDFANIRTGRITPAVFSKIVVDYYGAPTPVQQLASFHIPEPRMV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK +AS+E+ + +S+LG+NP +G ++RI PE +E+RR LVKVA + AE+++ Sbjct: 66 IITPYDKSSLASIEKAVRDSDLGVNPSNDGTIIRIVFPELSEQRRRDLVKVARSKAEEAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +S+RN+RR D + + + G A ED E D+ + T + +D K+ +++ Sbjct: 126 VSIRNVRRHAKDGIDRIVRDGDAGEDEGRRAEKDLDEATHRYVGQVDELLRLKEADLL 183 >gi|291299707|ref|YP_003510985.1| ribosome recycling factor [Stackebrandtia nassauensis DSM 44728] gi|290568927|gb|ADD41892.1| ribosome recycling factor [Stackebrandtia nassauensis DSM 44728] Length = 185 Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 69/178 (38%), Positives = 109/178 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++M +I K++ +RTGR S +M + V+ YGS PL Q+A++ V EPRM+ Sbjct: 6 LFDAEEKMDGSIEHAKEEFAAIRTGRASAAMFSKIVVDYYGSPTPLPQLASIAVPEPRMV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D ++ER I +S+LG+NP EG LR+ VP+ TEERR ++KVA AE+SK Sbjct: 66 IIKPYDVSQTDALERAIRDSDLGVNPNNEGNQLRLFVPQMTEERRREMIKVARHKAEESK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 I+VRN+RR + L++ G+ ED E D+ ++T IK ID K+ E++ Sbjct: 126 IAVRNVRRKAKEELERLVSDGEVGEDEGHRAEKDLDELTQRHIKLIDELVAHKETELL 183 >gi|255321712|ref|ZP_05362867.1| ribosome recycling factor [Campylobacter showae RM3277] gi|255301192|gb|EET80454.1| ribosome recycling factor [Campylobacter showae RM3277] Length = 185 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 69/184 (37%), Positives = 112/184 (60%), Gaps = 2/184 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ Q K+ I LK+D TLRTG+V+ S++D + V+ YGS PLNQVA V Sbjct: 2 LNEIYKKQ--KEHSDKCIEGLKRDFTTLRTGKVNISIVDNIYVDYYGSQTPLNQVATVLT 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + + ++ W+K M+ ++ I +N+G+NP +G+ +++ P T E+R K A A Sbjct: 60 SDASTISITPWEKPMLKTITAAISAANIGVNPNNDGESVKLFFPPMTVEQRQENAKHAKA 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 + EK+K+S+RNIR+D D +KK K +ED ++++QKITDS IDS +EK+ Sbjct: 120 FGEKAKVSIRNIRKDANDEVKKLEKDKTITEDESKKGQDEVQKITDSYTSKIDSLVKEKE 179 Query: 181 KEIM 184 E++ Sbjct: 180 NELL 183 >gi|304312451|ref|YP_003812049.1| Ribosome recycling factor [gamma proteobacterium HdN1] gi|301798184|emb|CBL46406.1| Ribosome recycling factor [gamma proteobacterium HdN1] Length = 185 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 64/174 (36%), Positives = 107/174 (61%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM + L++ + +RTGR +P++LD VKV+ YG+ PL QVA++ V + R L +S +D Sbjct: 12 RMKKCLEALEQALRKVRTGRANPAILDGVKVKYYGTDTPLKQVASINVEDSRTLSISAFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + + +E+ I +++LGLNP G V+R+P+P T+E R + K+A AE +++SVRN+ Sbjct: 72 RGAIPDIEKAIMKADLGLNPSTSGVVIRVPMPALTQETRKEMTKIARNEAEHARVSVRNV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD +K+ K + ED E+++QK+TD I +D K+ ++M Sbjct: 132 RRDANADIKELLKEKQIGEDEARKGEDEVQKLTDRYIVEVDKILTAKEADLMQI 185 >gi|254521520|ref|ZP_05133575.1| ribosome recycling factor [Stenotrophomonas sp. SKA14] gi|219719111|gb|EED37636.1| ribosome recycling factor [Stenotrophomonas sp. SKA14] Length = 184 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 73/177 (41%), Positives = 108/177 (61%), Gaps = 3/177 (1%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYG-SHVPLNQVANVTVLEPRMLV 67 N + RM +I LK + ++RTGR +P++LD V V AYG + PLNQVA+++ + L+ Sbjct: 8 NAQTRMAKSIDALKHTLTSIRTGRATPALLDRVTVNAYGNASTPLNQVASISNADAHSLL 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+ +DK M+ +E+G++ N P G +RI +P TEERR LVK E +KI Sbjct: 68 VTPFDKSMIKEIEKGLY--NHEFTPNTLGAAIRINMPPPTEERRKELVKQVQKEGEGAKI 125 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +VRNIR+D + K K SED E+DIQK+TD +IK++D EK+KE++ Sbjct: 126 AVRNIRQDANKEIAKLVKDKAISEDEKKRGEDDIQKLTDGSIKDVDKVVAEKEKELL 182 >gi|308183366|ref|YP_003927493.1| ribosome recycling factor [Helicobacter pylori PeCan4] gi|308065551|gb|ADO07443.1| ribosome recycling factor [Helicobacter pylori PeCan4] Length = 185 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 69/174 (39%), Positives = 106/174 (60%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 KD M +I L +D TLR+ +VS ++LD +KV+ YG+ LNQV +V L+ L +S Sbjct: 10 KDLMQKSIQALNRDFSTLRSAKVSVNILDHIKVDYYGTPTALNQVGSVMSLDATTLQISP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 W+K ++ +ER I E+N+G+NP +G+ +++ P T E+R + K A A EK+K++VR Sbjct: 70 WEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTTEQRKLIAKDAKAMGEKAKVAVR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 NIR+D + +KK K + SED + IQK TD IK ID + K+ I+ Sbjct: 130 NIRQDANNKIKKLEKDKEISEDESKKAQEQIQKTTDEAIKTIDESVKNKEDAIL 183 >gi|261838579|gb|ACX98345.1| ribosome releasing factor [Helicobacter pylori 51] Length = 185 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 69/174 (39%), Positives = 106/174 (60%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 KD M +I L +D TLR+ +VS ++LD +KV+ YG+ LNQV +V L+ L +S Sbjct: 10 KDLMQKSIQALNRDFSTLRSAKVSVNILDHIKVDYYGTPTALNQVGSVMSLDATTLQISP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 W+K ++ +ER I E+N+G+NP +G+ +++ P T E+R + K A A EK+K++VR Sbjct: 70 WEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTTEQRKLIAKDAKAMGEKAKVAVR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 N R+D + +KK K + SED + IQKITD IK ID + K+ I+ Sbjct: 130 NTRQDANNKIKKLEKDKEISEDESKKAQEQIQKITDEAIKQIDESVKNKEDAIL 183 >gi|237753264|ref|ZP_04583744.1| ribosome recycling factor [Helicobacter winghamensis ATCC BAA-430] gi|229375531|gb|EEO25622.1| ribosome recycling factor [Helicobacter winghamensis ATCC BAA-430] Length = 184 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 63/174 (36%), Positives = 111/174 (63%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K+ M +I +KK+ TLR+G+VS S+LD ++++ Y + PLNQV +V + +V++ Sbjct: 9 KEAMDKSIEAMKKEFGTLRSGKVSVSILDHIRIDYYDTPTPLNQVGSVIAQDASTIVITP 68 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 W+K ++ +ER I E+N+G+NP +G+ +++ P T E+R + K A EK+K+++R Sbjct: 69 WEKNLLKDIERAIQEANIGVNPNNDGETIKLFFPPMTSEQRKEIAKEAKNIGEKAKVAIR 128 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 NIR+D D +KK K + SED +++IQK TD+ K ID + K+++++ Sbjct: 129 NIRKDSNDKIKKLEKDKEISEDESKKGQDEIQKFTDNATKKIDELVKHKEEDLL 182 >gi|50842996|ref|YP_056223.1| ribosome recycling factor [Propionibacterium acnes KPA171202] gi|289426460|ref|ZP_06428203.1| ribosome recycling factor [Propionibacterium acnes SK187] gi|289428643|ref|ZP_06430326.1| ribosome recycling factor [Propionibacterium acnes J165] gi|295131067|ref|YP_003581730.1| ribosome recycling factor [Propionibacterium acnes SK137] gi|60390690|sp|Q6A7K0|RRF_PROAC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|50840598|gb|AAT83265.1| ribosome recycling factor [Propionibacterium acnes KPA171202] gi|289153188|gb|EFD01906.1| ribosome recycling factor [Propionibacterium acnes SK187] gi|289158041|gb|EFD06261.1| ribosome recycling factor [Propionibacterium acnes J165] gi|291377325|gb|ADE01180.1| ribosome recycling factor [Propionibacterium acnes SK137] gi|313763566|gb|EFS34930.1| ribosome recycling factor [Propionibacterium acnes HL013PA1] gi|313773505|gb|EFS39471.1| ribosome recycling factor [Propionibacterium acnes HL074PA1] gi|313793959|gb|EFS41983.1| ribosome recycling factor [Propionibacterium acnes HL110PA1] gi|313801346|gb|EFS42597.1| ribosome recycling factor [Propionibacterium acnes HL110PA2] gi|313807974|gb|EFS46455.1| ribosome recycling factor [Propionibacterium acnes HL087PA2] gi|313811557|gb|EFS49271.1| ribosome recycling factor [Propionibacterium acnes HL083PA1] gi|313816746|gb|EFS54460.1| ribosome recycling factor [Propionibacterium acnes HL059PA1] gi|313819543|gb|EFS57257.1| ribosome recycling factor [Propionibacterium acnes HL046PA2] gi|313822134|gb|EFS59848.1| ribosome recycling factor [Propionibacterium acnes HL036PA1] gi|313823632|gb|EFS61346.1| ribosome recycling factor [Propionibacterium acnes HL036PA2] gi|313825956|gb|EFS63670.1| ribosome recycling factor [Propionibacterium acnes HL063PA1] gi|313829423|gb|EFS67137.1| ribosome recycling factor [Propionibacterium acnes HL063PA2] gi|313831297|gb|EFS69011.1| ribosome recycling factor [Propionibacterium acnes HL007PA1] gi|313834908|gb|EFS72622.1| ribosome recycling factor [Propionibacterium acnes HL056PA1] gi|313839933|gb|EFS77647.1| ribosome recycling factor [Propionibacterium acnes HL086PA1] gi|314914720|gb|EFS78551.1| ribosome recycling factor [Propionibacterium acnes HL005PA4] gi|314919318|gb|EFS83149.1| ribosome recycling factor [Propionibacterium acnes HL050PA1] gi|314920772|gb|EFS84603.1| ribosome recycling factor [Propionibacterium acnes HL050PA3] gi|314924719|gb|EFS88550.1| ribosome recycling factor [Propionibacterium acnes HL036PA3] gi|314930451|gb|EFS94282.1| ribosome recycling factor [Propionibacterium acnes HL067PA1] gi|314954392|gb|EFS98798.1| ribosome recycling factor [Propionibacterium acnes HL027PA1] gi|314957475|gb|EFT01578.1| ribosome recycling factor [Propionibacterium acnes HL002PA1] gi|314962110|gb|EFT06211.1| ribosome recycling factor [Propionibacterium acnes HL002PA2] gi|314963689|gb|EFT07789.1| ribosome recycling factor [Propionibacterium acnes HL082PA1] gi|314968483|gb|EFT12581.1| ribosome recycling factor [Propionibacterium acnes HL037PA1] gi|314974173|gb|EFT18269.1| ribosome recycling factor [Propionibacterium acnes HL053PA1] gi|314976537|gb|EFT20632.1| ribosome recycling factor [Propionibacterium acnes HL045PA1] gi|314978900|gb|EFT22994.1| ribosome recycling factor [Propionibacterium acnes HL072PA2] gi|314984356|gb|EFT28448.1| ribosome recycling factor [Propionibacterium acnes HL005PA1] gi|314986546|gb|EFT30638.1| ribosome recycling factor [Propionibacterium acnes HL005PA2] gi|314990905|gb|EFT34996.1| ribosome recycling factor [Propionibacterium acnes HL005PA3] gi|315079539|gb|EFT51532.1| ribosome recycling factor [Propionibacterium acnes HL053PA2] gi|315081233|gb|EFT53209.1| ribosome recycling factor [Propionibacterium acnes HL078PA1] gi|315083599|gb|EFT55575.1| ribosome recycling factor [Propionibacterium acnes HL027PA2] gi|315087116|gb|EFT59092.1| ribosome recycling factor [Propionibacterium acnes HL002PA3] gi|315089289|gb|EFT61265.1| ribosome recycling factor [Propionibacterium acnes HL072PA1] gi|315095312|gb|EFT67288.1| ribosome recycling factor [Propionibacterium acnes HL038PA1] gi|315099193|gb|EFT71169.1| ribosome recycling factor [Propionibacterium acnes HL059PA2] gi|315100324|gb|EFT72300.1| ribosome recycling factor [Propionibacterium acnes HL046PA1] gi|315106750|gb|EFT78726.1| ribosome recycling factor [Propionibacterium acnes HL030PA1] gi|315108992|gb|EFT80968.1| ribosome recycling factor [Propionibacterium acnes HL030PA2] gi|327328425|gb|EGE70187.1| ribosome recycling factor [Propionibacterium acnes HL096PA2] gi|327329709|gb|EGE71465.1| ribosome recycling factor [Propionibacterium acnes HL096PA3] gi|327444212|gb|EGE90866.1| ribosome recycling factor [Propionibacterium acnes HL043PA2] gi|327444909|gb|EGE91563.1| ribosome recycling factor [Propionibacterium acnes HL043PA1] gi|327446394|gb|EGE93048.1| ribosome recycling factor [Propionibacterium acnes HL013PA2] gi|327452018|gb|EGE98672.1| ribosome recycling factor [Propionibacterium acnes HL092PA1] gi|327454945|gb|EGF01600.1| ribosome recycling factor [Propionibacterium acnes HL087PA3] gi|327457769|gb|EGF04424.1| ribosome recycling factor [Propionibacterium acnes HL083PA2] gi|328752149|gb|EGF65765.1| ribosome recycling factor [Propionibacterium acnes HL020PA1] gi|328755222|gb|EGF68838.1| ribosome recycling factor [Propionibacterium acnes HL087PA1] gi|328758299|gb|EGF71915.1| ribosome recycling factor [Propionibacterium acnes HL025PA2] gi|328760030|gb|EGF73611.1| ribosome recycling factor [Propionibacterium acnes HL099PA1] gi|332675946|gb|AEE72762.1| ribosome-recycling factor [Propionibacterium acnes 266] Length = 184 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 63/180 (35%), Positives = 111/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +++ + +MG + +++ +RTGR +P+M + + VE YG+ PL Q+A+ V E R + Sbjct: 5 IKDAEKKMGSAVDHAREEFAAIRTGRANPAMFNKLMVEYYGTPTPLQQLASFQVPEARTV 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK V VE+ I +S+LG+NP +G V+R +P TEERR +K+A AE+ + Sbjct: 65 LIAPFDKSCVNDVEKAIRDSDLGVNPSNDGNVVRCVLPALTEERRKEYIKMAKTKAEEGR 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I+VRN+RR D +KK K + SED + LE ++ ++T ++ ID + K+ E++ Sbjct: 125 IAVRNVRRASNDVVKKQEKDKEISEDEMTRLEKELDQVTRKYVEQIDELLKSKESELLEI 184 >gi|37519857|ref|NP_923234.1| ribosome recycling factor [Gloeobacter violaceus PCC 7421] gi|39932053|sp|Q7NNX0|RRF_GLOVI RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|35210848|dbj|BAC88229.1| ribosome releasing factor [Gloeobacter violaceus PCC 7421] Length = 182 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 67/170 (39%), Positives = 103/170 (60%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M I + T+RTGR S S+LD + VE YG PL +A +T + +++ +D Sbjct: 10 MRKAIEATAGNFATIRTGRASTSLLDRINVEYYGQPTPLKTLATITTPDASTVLIQPYDP 69 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 + +E+ I ES+LGL P +G+ +R+ +P T ERR LVKV AE+ +++VRNIR Sbjct: 70 SSLRLIEKTILESDLGLPPSNDGKTIRLNIPPLTAERRKDLVKVLRNLAEEGRVAVRNIR 129 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 R +D ++K K K SED L++++QK+TD +I+ I+ FE K+KEI Sbjct: 130 RHAIDEVRKEEKDAKVSEDEARRLQDEVQKLTDKSIQQIEKLFEAKEKEI 179 >gi|117928746|ref|YP_873297.1| ribosome recycling factor [Acidothermus cellulolyticus 11B] gi|166230403|sp|A0LV51|RRF_ACIC1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|117649209|gb|ABK53311.1| ribosome recycling factor [Acidothermus cellulolyticus 11B] Length = 185 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 61/178 (34%), Positives = 112/178 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + +++ +RTGR +P++ + VE YG+ PLNQ+A+ TV + R++ Sbjct: 6 LLEAEEKMEKATNVARENFAAIRTGRANPALFSKITVEYYGTPTPLNQLASFTVADARLI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +DK + ++E+ I +S+LG+NP +G V+R+ +P TEERR +K+A AE+++ Sbjct: 66 VIHPYDKGSLRAIEKAIRDSDLGVNPTDDGSVIRVAIPPLTEERRRDYIKMARHEAEEAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++RNIRR D L K +K G+ ED V E ++ ++T + +ID + K+ E++ Sbjct: 126 VAIRNIRRHAKDALDKLQKDGEVGEDDVRRAEKELDELTHKYVAHIDEMLKHKEAELL 183 >gi|309800830|ref|ZP_07694962.1| ribosome recycling factor [Bifidobacterium dentium JCVIHMP022] gi|308222366|gb|EFO78646.1| ribosome recycling factor [Bifidobacterium dentium JCVIHMP022] Length = 184 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 69/185 (37%), Positives = 109/185 (58%), Gaps = 2/185 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M ++D K +M ++ K++ +RTGR +P++L+ + V+ YG+ PL VA + V Sbjct: 1 MANIVD--QAKAQMAKSVESTKENFSGIRTGRANPALLNGITVDYYGAPTPLKAVATIGV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPR L V+ +D +VE+ + +S+LG +P +G V+R+ +PE TEERR VK+A Sbjct: 59 PEPRTLSVTPFDASQANAVEKALRDSDLGASPRRDGNVIRLTMPELTEERRKEYVKLAKG 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE K++VRNIRR + + K+ K G ED L ++ K+T T +D+ E K+ Sbjct: 119 KAEDGKVAVRNIRRKTKESIDKAIKDGDMGEDEGDRLLKELDKVTKQTTDELDTLLEAKQ 178 Query: 181 KEIMH 185 KEIM Sbjct: 179 KEIME 183 >gi|297202666|ref|ZP_06920063.1| ribosome recycling factor [Streptomyces sviceus ATCC 29083] gi|197713241|gb|EDY57275.1| ribosome recycling factor [Streptomyces sviceus ATCC 29083] Length = 185 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 64/179 (35%), Positives = 106/179 (59%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K+D +RTGR P+M + + + YG+ P+NQ+A+ +V EPRM Sbjct: 6 LLEAEEKMEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGAPTPINQLASFSVPEPRMA 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV+ +DK + ++E+ I +S+LG+NP +G ++R+ PE TEERR +KVA AE SK Sbjct: 66 VVTPFDKTALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEERRRDYIKVARGKAEDSK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +S+R++RR D + K K G+ ED E D+ T + +D + K+ E++ Sbjct: 126 VSIRSVRRKAKDAIDKLVKDGEVGEDEGRRAEKDLDDATHKYVAQVDELLKHKEAELLE 184 >gi|57239449|ref|YP_180585.1| ribosome recycling factor [Ehrlichia ruminantium str. Welgevonden] gi|58579425|ref|YP_197637.1| ribosome recycling factor [Ehrlichia ruminantium str. Welgevonden] gi|62900780|sp|Q5HAF9|RRF_EHRRW RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|57161528|emb|CAH58455.1| ribosome recycling factor [Ehrlichia ruminantium str. Welgevonden] gi|58418051|emb|CAI27255.1| Ribosome recycling factor [Ehrlichia ruminantium str. Welgevonden] Length = 185 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 73/178 (41%), Positives = 109/178 (61%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ K+RM T+S D+ +RTGR S+LD + VE YG V LN +++++V + + L+ Sbjct: 7 QDAKNRMEKTLSVYLSDVDGIRTGRARASVLDGIVVETYGGRVKLNTISSISVSDNKTLL 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V VW+ V +++ I SNLG EG V+R+ VP+ T++ R LVK+ +E +I Sbjct: 67 VKVWEINNVGAIKTAIINSNLGFGFSCEGAVIRLTVPDMTQDMRKNLVKLLGKISEDCRI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 S+RNIRRD MD LK + + SED + +IQKITD IK I+ F K+KE++H Sbjct: 127 SIRNIRRDIMDKLKIMQDNKDISEDDLRIAGVEIQKITDEIIKKINDTFLAKEKELLH 184 >gi|57234843|ref|YP_181120.1| ribosome recycling factor [Dehalococcoides ethenogenes 195] gi|123618956|sp|Q3Z9H9|RRF_DEHE1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|57225291|gb|AAW40348.1| ribosome recycling factor [Dehalococcoides ethenogenes 195] Length = 185 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 62/177 (35%), Positives = 112/177 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 LQ + +M ++ L +++ +RTGR SP++++ +KVE G P+N +A++ +PR + Sbjct: 6 LQKSEKKMAASLDVLSQELSGIRTGRSSPALVEHIKVEYAGVPTPINHLASIAAPDPRYI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WD+ ++++E+ I +S+LGL P +G ++R+ +P +EERR ++K+ E+ K Sbjct: 66 TIQPWDRSCLSAIEKAIMKSDLGLMPNNDGNIIRLNIPPLSEERRQEMIKMVSKRLEEDK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 I++RN+RRD MD +KK KS + S+D + + +QKITDS I D +K+ E+ Sbjct: 126 IAMRNVRRDAMDEMKKLEKSKEISQDDLKRGSDQLQKITDSFIAKADKLGADKETEL 182 >gi|311694060|gb|ADP96933.1| ribosome recycling factor [marine bacterium HP15] Length = 185 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 68/157 (43%), Positives = 98/157 (62%) Query: 28 LRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESN 87 +RTGR PS+LD V V YG PL QVA+V V + R L VS W+K ++ ++E+ I S+ Sbjct: 27 IRTGRAHPSILDSVMVNYYGQETPLKQVASVNVEDNRTLTVSPWEKNLMPTIEKAIMASD 86 Query: 88 LGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSG 147 LGLNP G ++RIP+P TEE R +VK A A AE ++S+RN RRD +K K Sbjct: 87 LGLNPATSGDIIRIPMPMLTEETRKEMVKQAKADAEHGRVSIRNARRDANSMIKDLLKEK 146 Query: 148 KASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 + +ED E+DIQK+TD I ++ + K++++M Sbjct: 147 EITEDDERKGEDDIQKLTDRYIAEVEKMLKAKEEDLM 183 >gi|317013043|gb|ADU83651.1| ribosome recycling factor [Helicobacter pylori Lithuania75] Length = 185 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 68/174 (39%), Positives = 107/174 (61%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 KD M ++ L +D TLR+ +VS ++LD +KV+ YG+ LNQV +V L+ + +S Sbjct: 10 KDLMQKSVQALNRDFSTLRSAKVSVNILDHIKVDYYGTPTALNQVGSVMSLDATTIQISP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 W+K ++ +ER I E+N+G+NP +G+ +++ P T E+R + K A A EK+K++VR Sbjct: 70 WEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTSEQRKLIAKDAKAMGEKAKVAVR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 NIR+D + +KK K + SED + IQKITD IK ID + K+ I+ Sbjct: 130 NIRQDANNKVKKLEKDKEISEDESKKAQEQIQKITDEAIKKIDESVKNKEDAIL 183 >gi|56416455|ref|YP_153529.1| ribosome recycling factor [Anaplasma marginale str. St. Maries] gi|222474824|ref|YP_002563239.1| ribosome recycling factor (rrf) [Anaplasma marginale str. Florida] gi|254994684|ref|ZP_05276874.1| ribosome recycling factor [Anaplasma marginale str. Mississippi] gi|255002796|ref|ZP_05277760.1| ribosome recycling factor [Anaplasma marginale str. Puerto Rico] gi|255003930|ref|ZP_05278731.1| ribosome recycling factor [Anaplasma marginale str. Virginia] gi|56387687|gb|AAV86274.1| ribosome recycling factor [Anaplasma marginale str. St. Maries] gi|222418960|gb|ACM48983.1| ribosome recycling factor (rrf) [Anaplasma marginale str. Florida] Length = 183 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 73/174 (41%), Positives = 105/174 (60%), Gaps = 1/174 (0%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 ++RM T S D+ +RTGRVS S+LD V + YG+ V LN VA+++V R L++S+ Sbjct: 10 RERMEKTFSMFLSDISGIRTGRVSASLLDGVFLTYYGNKVRLNTVASISV-SGRTLLISL 68 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 WD ++ V+ I SNLG E +R+ VPE T + R LVK+ E+ K+SVR Sbjct: 69 WDASVIGDVKAAIDASNLGFGMTCEATTIRLVVPELTSDVRKNLVKMLSKLTEEGKVSVR 128 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 NIRRD +D LK + + + SED S+ +IQK+TD+ IK I F K+ EI+ Sbjct: 129 NIRRDTIDKLKSMQDNKEISEDDFHSISAEIQKVTDTFIKKIGDAFSVKESEIL 182 >gi|195953623|ref|YP_002121913.1| ribosome recycling factor [Hydrogenobaculum sp. Y04AAS1] gi|259494546|sp|B4U9X4|RRF_HYDS0 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|195933235|gb|ACG57935.1| ribosome recycling factor [Hydrogenobaculum sp. Y04AAS1] Length = 182 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 69/180 (38%), Positives = 108/180 (60%), Gaps = 4/180 (2%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ ++ M +I+ K ++ RTGR S S+++ +K+E YGS VP+ QV NV+V EP + Sbjct: 6 LEEAEESMKKSINHFKSELAGFRTGRASTSLVEDIKIEYYGSRVPIKQVGNVSVPEPNQI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ VWD+ ++ +E+ I E L LNP +G LRI +P T+ERR LVK+ H E++K Sbjct: 66 LIQVWDQNAISPIEKAIME-QLSLNPARQGNTLRITLPPLTQERRKELVKLLHKTTEEAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD + ++ SED + + +QKITD I I + K+KEI Sbjct: 125 VAIRNIRRDAKEMIESLE---GISEDEIKRALDKLQKITDHYIDEISNLSSSKEKEITEL 181 >gi|269959131|ref|YP_003328920.1| ribosome recycling factor [Anaplasma centrale str. Israel] gi|269848962|gb|ACZ49606.1| ribosome recycling factor [Anaplasma centrale str. Israel] Length = 183 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 74/174 (42%), Positives = 105/174 (60%), Gaps = 1/174 (0%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K+RM T S D+ +RTGRVS S+LD V + YG+ V LN VA+++V R L++S+ Sbjct: 10 KERMEKTFSMFLSDISGIRTGRVSASLLDGVFLTYYGNKVRLNTVASISV-SGRTLLISL 68 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 WD ++ V+ I SNLG E +R+ VPE T + R LVK+ E+ K+SVR Sbjct: 69 WDASVLGDVKAAIDASNLGFGMTCEATTIRLVVPELTSDVRKNLVKMLSKLTEEGKVSVR 128 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 NIRRD +D LK + + + SED S+ +IQK+TD+ IK I F K+ EI+ Sbjct: 129 NIRRDTIDKLKSMQDNKEISEDDFHSVSAEIQKVTDTFIKKIGDAFSVKESEIL 182 >gi|291542738|emb|CBL15848.1| ribosome recycling factor [Ruminococcus bromii L2-63] Length = 184 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 64/180 (35%), Positives = 110/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ + M + ++ + +R GR +P++LD VKV+ YG+ P+NQ+A V+V E R L Sbjct: 5 LKKAGESMDRRLEHMRTEFSEIRAGRANPAVLDKVKVDYYGAPTPVNQLAAVSVTEARTL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WD ++ +E+ I S++G+NP +G+++R+ P TE+RR +VK AE++K Sbjct: 65 TIQPWDASVLRQIEKAIQTSDIGINPQNDGKIIRLIFPPLTEDRRKEIVKDVQKIAEETK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I +RN+RR+ +D LK +K G+ +ED + E Q +TD +K ++S K+KEI+ Sbjct: 125 IQIRNVRRELIDKLKAMKKDGELTEDDLKQGEKKAQDLTDKYVKEVESVSAVKQKEILEM 184 >gi|21223982|ref|NP_629761.1| ribosome recycling factor [Streptomyces coelicolor A3(2)] gi|289768824|ref|ZP_06528202.1| ribosome recycling factor [Streptomyces lividans TK24] gi|6831642|sp|O86770|RRF_STRCO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|3319759|emb|CAA19925.1| ribosome recycling factor [Streptomyces coelicolor A3(2)] gi|289699023|gb|EFD66452.1| ribosome recycling factor [Streptomyces lividans TK24] Length = 185 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 63/179 (35%), Positives = 106/179 (59%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K+D +RTGR P+M + + E YG+ P+NQ+A+ +V EPRM Sbjct: 6 LLEAEEKMEKAVVVAKEDFAAIRTGRAHPAMFNKIVAEYYGAPTPINQLASFSVPEPRMA 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV+ +DK + ++E+ I +S+LG+NP +G ++R+ PE TEERR +KVA A E +K Sbjct: 66 VVTPFDKTALRNIEQAIRDSDLGVNPSNDGNIIRVTFPELTEERRREYIKVAKAKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +S+R++RR D + K K G+ ED E ++ T + +D + K+ E++ Sbjct: 126 VSIRSVRRKAKDSIDKMVKDGEVGEDEGRRAEKELDDTTAKYVAQVDELLKHKEAELLE 184 >gi|217033577|ref|ZP_03439005.1| hypothetical protein HP9810_899g13 [Helicobacter pylori 98-10] gi|216943923|gb|EEC23357.1| hypothetical protein HP9810_899g13 [Helicobacter pylori 98-10] Length = 185 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 68/174 (39%), Positives = 107/174 (61%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 KD M +I L +D TLR+ +VS ++LD +KV+ YG+ LNQV +V L+ L +S Sbjct: 10 KDLMQKSIQALNRDFSTLRSAKVSVNILDHIKVDYYGTPTALNQVGSVMSLDATTLQISP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 W+K ++ +ER I E+N+G+NP +G+ +++ P T ++R + K A A EK+K++VR Sbjct: 70 WEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTTDQRKLIAKDAKAMGEKAKVAVR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 NIR+D + +KK K + SED + IQKITD +K ID + K+ I+ Sbjct: 130 NIRQDANNKIKKLEKDKEISEDESKKAQEQIQKITDEAVKTIDESVKNKEDAIL 183 >gi|219685407|ref|ZP_03540226.1| ribosome recycling factor [Borrelia garinii Far04] gi|219673180|gb|EED30200.1| ribosome recycling factor [Borrelia garinii Far04] Length = 184 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 67/173 (38%), Positives = 108/173 (62%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 ++M + L + TLRTGR+S ++ D + ++ +G P+ QV+++ + E R++V+ W Sbjct: 10 EKMSKVLLSLDNEYKTLRTGRISSNVFDKIFIQYHGQKTPITQVSSIRIPEARLVVIQPW 69 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 DK ++ +E+ I S+L +NP+ +G V+RI VP T ERR +VK A AE+ K+S RN Sbjct: 70 DKTILNKIEQAILNSDLSMNPLSDGSVIRIKVPALTNERRQDIVKHAKKIAEEHKVSTRN 129 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 IR+D + +KK K + +ED + + +DIQK D IK ID+ E K +EIM Sbjct: 130 IRQDLNNKVKKQEKESEITEDNLKRILDDIQKSIDIYIKRIDTILESKIQEIM 182 >gi|256784931|ref|ZP_05523362.1| ribosome recycling factor [Streptomyces lividans TK24] Length = 186 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 63/179 (35%), Positives = 106/179 (59%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K+D +RTGR P+M + + E YG+ P+NQ+A+ +V EPRM Sbjct: 7 LLEAEEKMEKAVVVAKEDFAAIRTGRAHPAMFNKIVAEYYGAPTPINQLASFSVPEPRMA 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV+ +DK + ++E+ I +S+LG+NP +G ++R+ PE TEERR +KVA A E +K Sbjct: 67 VVTPFDKTALRNIEQAIRDSDLGVNPSNDGNIIRVTFPELTEERRREYIKVAKAKGEDAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +S+R++RR D + K K G+ ED E ++ T + +D + K+ E++ Sbjct: 127 VSIRSVRRKAKDSIDKMVKDGEVGEDEGRRAEKELDDTTAKYVAQVDELLKHKEAELLE 185 >gi|189468227|ref|ZP_03017012.1| hypothetical protein BACINT_04623 [Bacteroides intestinalis DSM 17393] gi|189436491|gb|EDV05476.1| hypothetical protein BACINT_04623 [Bacteroides intestinalis DSM 17393] Length = 209 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 72/178 (40%), Positives = 104/178 (58%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + +L++ + +R G+ +LD ++V++YGS VP+N VA V + R + Sbjct: 31 LDEAQEKMDMAVMYLEEALAHIRAGKADVRLLDGIRVDSYGSMVPINNVAAVNTPDARSI 90 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK M +E+ I +S+LG+ P G+++RI +P TEERR L K E +K Sbjct: 91 AIKPWDKSMFRVIEKAIIDSSLGIMPENNGEIIRIGIPPLTEERRRQLAKQCKGEGETAK 150 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +SVRN RRD +D LKKS K G A ED E +QKI D IK ID K KEIM Sbjct: 151 VSVRNARRDAIDALKKSVKDGLA-EDAQKGGEEKLQKIHDKYIKQIDDMLIAKDKEIM 207 >gi|153003180|ref|YP_001377505.1| ribosome recycling factor [Anaeromyxobacter sp. Fw109-5] gi|190360233|sp|A7H725|RRF_ANADF RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|152026753|gb|ABS24521.1| ribosome recycling factor [Anaeromyxobacter sp. Fw109-5] Length = 187 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 63/180 (35%), Positives = 111/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++ + +T+ L++++ ++RTGR S +LD V+V+ YG+ PLNQVA ++V E R++ Sbjct: 8 LNDLHGGIANTLDDLRRELASVRTGRASLHLLDGVRVDYYGTSTPLNQVATLSVPEARLI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V W+K ++ +E+ I ++NLG+NP + ++R+P+P TEERR +VK E K Sbjct: 68 MVKPWEKNLIPVIEKAIRDANLGVNPQSDKDLVRVPIPPLTEERRKEIVKQVKHKGEDHK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RN RRD + ++ + K G + D + +QK TD +K +D K+KE+M Sbjct: 128 VAIRNQRRDAKELIEVAEKDGDIAADDAKKALDKMQKETDEGVKKVDEIVAAKEKEVMQV 187 >gi|238898426|ref|YP_002924107.1| ribosome recycling factor [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259494545|sp|C4K5W6|RRF_HAMD5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|229466185|gb|ACQ67959.1| ribosome recycling factor [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 185 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 67/174 (38%), Positives = 107/174 (61%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 + RM + + +RTGR SPS+LD ++VE YG+ PL Q+AN+ + L V+V Sbjct: 10 QSRMEKCTESFESQIKKIRTGRASPSILDSIQVEYYGASTPLRQLANIVAEDSSHLAVTV 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +D+ + +E+ I S LGLNP ++R+P+P TE+RR L+KV + AE ++++VR Sbjct: 70 FDRNLTPYIEKAIQNSPLGLNPSSAANLIRVPLPPLTEDRRKELIKVIRSEAEAARVAVR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 NIR K++ K + SED +++++QK+TD IK ID F +K+KE+M Sbjct: 130 NIRASVNKKSKETLKKKEISEDEDRQIQDNVQKLTDRYIKKIDEFLTKKEKEVM 183 >gi|223985634|ref|ZP_03635684.1| hypothetical protein HOLDEFILI_02990 [Holdemania filiformis DSM 12042] gi|223962401|gb|EEF66863.1| hypothetical protein HOLDEFILI_02990 [Holdemania filiformis DSM 12042] Length = 182 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 73/184 (39%), Positives = 111/184 (60%), Gaps = 5/184 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M +++D N + +M I + + T+RTGR + ML V+ + YG P+NQ++++TV Sbjct: 2 MKEILD--NSRSKMQKAIDTFSEHLETIRTGRANAGMLAGVEADYYGCPTPINQISSITV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 +E R LVV +D + ++E I++S+LGLNP +G V+RI VP TEE R L K Sbjct: 60 VEGRQLVVKPYDSSSLKAIEHAINKSDLGLNPQNDGSVIRINVPALTEETRKELCKKVSK 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 +E++KI+VRN+RRD + ++K +ED IQK+TD IK +DS EK+ Sbjct: 120 LSEEAKIAVRNLRRDANEI---AKKDDTLTEDAEKECLEKIQKLTDEMIKKVDSVAAEKE 176 Query: 181 KEIM 184 KEIM Sbjct: 177 KEIM 180 >gi|126695885|ref|YP_001090771.1| ribosome recycling factor [Prochlorococcus marinus str. MIT 9301] gi|126542928|gb|ABO17170.1| Ribosome recycling factor [Prochlorococcus marinus str. MIT 9301] Length = 173 Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 67/171 (39%), Positives = 107/171 (62%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M +I +++ T+RTGR + S+LD V VE YG+ P+ +A ++ ++ + + + +D Sbjct: 1 MNKSIEATQRNFNTIRTGRANASLLDRVSVEYYGAETPIKSLATISTVDSQTISIQPFDI 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 + ++E+ I S+LG+ P +G+V+RI VP TEERR K+A YAE+ K+++RNIR Sbjct: 61 SCLQAIEKSISMSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGKVALRNIR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RD +D KK K G S D +++IQKITD I I++ EK+KEI+ Sbjct: 121 RDAVDKEKKDEKDGLISIDESRDNQSEIQKITDKYIALIETKLSEKEKEIL 171 >gi|15612242|ref|NP_223895.1| ribosome recycling factor [Helicobacter pylori J99] gi|6831645|sp|Q9ZJX1|RRF_HELPJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|4155787|gb|AAD06763.1| RIBOSOME RECYCLING FACTOR (RIBOSOME RELEASING FACTOR) (RRF) [Helicobacter pylori J99] Length = 185 Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 69/174 (39%), Positives = 106/174 (60%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 KD M +I L +D TLR+ +VS ++LD +KV+ YG+ LNQV +V L+ L +S Sbjct: 10 KDLMQKSIQALNRDFSTLRSAKVSVNILDHIKVDYYGTPTALNQVGSVMSLDATTLQISP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 W+K ++ +ER I E+N+G+NP +G+ +++ P T E+R + K A A EK+K++VR Sbjct: 70 WEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTTEQRKLIAKDAKAMGEKAKVAVR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 N R+D + +KK K + SED + IQKITD IK ID + K+ I+ Sbjct: 130 NTRQDANNKVKKLEKDKEISEDESKKAQEQIQKITDEAIKKIDESVKNKEDAIL 183 >gi|218962144|ref|YP_001741919.1| ribosome recycling factor [Candidatus Cloacamonas acidaminovorans] gi|167730801|emb|CAO81713.1| ribosome recycling factor [Candidatus Cloacamonas acidaminovorans] Length = 184 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 67/177 (37%), Positives = 106/177 (59%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 N K++M + + +RTGR S S+LD +K+ YG P+ Q+ N+++ E RM+VV Sbjct: 7 NTKEKMQKSFDAMLHQYSKIRTGRASASILDDIKINYYGLPTPIKQLCNISIPEARMIVV 66 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 WDK +A +E+ I +N+G+ P +G V+R+P TEE+R +VK +E ++++ Sbjct: 67 QPWDKTTLADIEKAILAANIGITPENDGNVIRLPFQPLTEEKRRDIVKNIKKISEDTRVA 126 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +RNIRRD D +KK +K + SED ++Q +TD IK ID + K+KEIM Sbjct: 127 IRNIRRDANDIVKKEKKDSEISEDDEKKQLKELQDLTDDWIKKIDEAEKAKEKEIME 183 >gi|88608154|ref|YP_506809.1| ribosome recycling factor [Neorickettsia sennetsu str. Miyayama] gi|123491285|sp|Q2GCI7|RRF_NEOSM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|88600323|gb|ABD45791.1| ribosome recycling factor [Neorickettsia sennetsu str. Miyayama] Length = 185 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 72/178 (40%), Positives = 110/178 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ D++ + D+ +R+G +S S+LD V V + + LNQVA+++V+ +ML Sbjct: 6 IKETNDKLRSSYEVFLSDLKGIRSGSLSVSILDGVIVSTHMGKLRLNQVASLSVVNNKML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V VWDK V +V+ I SNLG+NPIVEG VLR+PVP+ TEERR LVKV Y +++K Sbjct: 66 SVQVWDKSTVGAVKDAILTSNLGMNPIVEGSVLRLPVPDLTEERRKELVKVLKKYGDRAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++VRNIRRD + +K K+ + SE+ + +L I KI ID +K+ +I+ Sbjct: 126 VAVRNIRRDAISRIKVLEKAKEISENDMHALLKKIDKIISEEDARIDDAVSKKETDIL 183 >gi|91214958|ref|ZP_01251930.1| ribosome releasing factor [Psychroflexus torquis ATCC 700755] gi|91186563|gb|EAS72934.1| ribosome releasing factor [Psychroflexus torquis ATCC 700755] Length = 184 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 77/186 (41%), Positives = 118/186 (63%), Gaps = 6/186 (3%) Query: 1 MNQVID--LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 MN+ I+ + + K+ M I L+K + ++R G+ +PSML V V+ YG+ P++QV+N+ Sbjct: 1 MNEEIEFIIDSTKESMEQAIQHLRKQLASIRAGKANPSMLSSVMVQYYGAKTPISQVSNI 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 + R L + ++K ++ +E+GI +NLG NP+ G+ + I VP TEERRL L K A Sbjct: 61 NTPDARTLTIQPFEKSIIKDIEKGIMNANLGFNPMNNGESVIINVPPLTEERRLQLSKKA 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 A AE++KI VRN RR+ M+ +KK+ ED+ E+DIQK+TDS I+ ID + Sbjct: 121 KAEAEEAKIGVRNDRRNAMNEIKKA----DLPEDVQKDTEDDIQKLTDSFIEEIDKIYAS 176 Query: 179 KKKEIM 184 K+KEIM Sbjct: 177 KEKEIM 182 >gi|208435150|ref|YP_002266816.1| ribosome releasing factor [Helicobacter pylori G27] gi|226749932|sp|B5Z8Q1|RRF_HELPG RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|208433079|gb|ACI27950.1| ribosome releasing factor [Helicobacter pylori G27] Length = 185 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 69/174 (39%), Positives = 106/174 (60%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 KD M +I L +D TLR+ +VS ++LD +KV+ YG+ LNQV +V L+ L +S Sbjct: 10 KDLMQKSIQALSRDFSTLRSAKVSVNILDHIKVDYYGTPTALNQVGSVMSLDATTLQISP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 W+K ++ +ER I E+N+G+NP +G+ +++ P T E+R + K A A EK+K++VR Sbjct: 70 WEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTTEQRKLIAKDAKAMGEKAKVAVR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 N R+D + +KK K + SED + IQKITD IK ID + K+ I+ Sbjct: 130 NTRQDANNKVKKLEKDKEISEDESKKAQEQIQKITDEAIKKIDESVKNKEDAIL 183 >gi|182415960|ref|YP_001821026.1| ribosome recycling factor [Opitutus terrae PB90-1] gi|177843174|gb|ACB77426.1| ribosome recycling factor [Opitutus terrae PB90-1] Length = 181 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 65/178 (36%), Positives = 109/178 (61%), Gaps = 4/178 (2%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + + +M + + + TG+ +P+M++ V +EAYGS + L A ++ + R++ Sbjct: 6 LVDAQAKMKKAVDHTLHEFSAIHTGKATPAMVEGVMLEAYGSQMRLKDCAAISTPDARLI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WD +V ++ +GI E+NLG NPI + +V+R+P+PE + ERR VK AH AE+ + Sbjct: 66 QIQPWDASLVKAIVKGIQEANLGFNPIPDSKVVRVPLPEMSRERRQEFVKNAHRLAEEGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 + VRN+RRD ++ LKK+ K ED LE DIQ TD++IK I+ K+K+++ Sbjct: 126 VHVRNVRRDVLEGLKKA----KLPEDESKRLEKDIQTATDASIKAINDALAHKEKDLL 179 >gi|282854667|ref|ZP_06264002.1| ribosome recycling factor [Propionibacterium acnes J139] gi|282582249|gb|EFB87631.1| ribosome recycling factor [Propionibacterium acnes J139] gi|314923764|gb|EFS87595.1| ribosome recycling factor [Propionibacterium acnes HL001PA1] gi|314966222|gb|EFT10321.1| ribosome recycling factor [Propionibacterium acnes HL082PA2] gi|314981988|gb|EFT26081.1| ribosome recycling factor [Propionibacterium acnes HL110PA3] gi|315090899|gb|EFT62875.1| ribosome recycling factor [Propionibacterium acnes HL110PA4] gi|315095112|gb|EFT67088.1| ribosome recycling factor [Propionibacterium acnes HL060PA1] gi|315104341|gb|EFT76317.1| ribosome recycling factor [Propionibacterium acnes HL050PA2] gi|327328110|gb|EGE69879.1| ribosome recycling factor [Propionibacterium acnes HL103PA1] Length = 184 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 63/180 (35%), Positives = 110/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +++ + +MG + +++ +RTGR +P+M + + VE YG+ PL Q+A+ V E R + Sbjct: 5 IKDAEKKMGSAVDHAREEFAAIRTGRANPAMFNKLMVEYYGTPTPLQQLASFQVPEARTV 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK V VE+ I +S+LG+NP +G V+R +P TEERR +K+A AE+ + Sbjct: 65 LIAPFDKSCVNDVEKAIRDSDLGVNPSNDGNVVRCVLPALTEERRKEYIKMAKTKAEEGR 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I+VRN+RR D +KK K SED + LE ++ ++T ++ ID + K+ E++ Sbjct: 125 IAVRNVRRASNDVVKKQEKDKDISEDEMTRLEKELDQVTRKYVEQIDELLKSKESELLEI 184 >gi|257792211|ref|YP_003182817.1| ribosome recycling factor [Eggerthella lenta DSM 2243] gi|317490131|ref|ZP_07948620.1| ribosome recycling factor [Eggerthella sp. 1_3_56FAA] gi|325833584|ref|ZP_08166033.1| ribosome recycling factor [Eggerthella sp. HGA1] gi|257476108|gb|ACV56428.1| ribosome recycling factor [Eggerthella lenta DSM 2243] gi|316910836|gb|EFV32456.1| ribosome recycling factor [Eggerthella sp. 1_3_56FAA] gi|325485508|gb|EGC87977.1| ribosome recycling factor [Eggerthella sp. HGA1] Length = 185 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 64/180 (35%), Positives = 107/180 (59%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + ++RM + L ++RTGR + +LD ++V+ YG P+NQ+A V + ML Sbjct: 6 MMQAEERMEKALGSLGDAFASVRTGRANAMVLDRIRVDYYGVPTPVNQMAGVKTPDAHML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK ++ ++E I +S+LG+ P +G V+R+P P TEERR LVK YAE+++ Sbjct: 66 VIEPWDKGVLGAIEHAILQSDLGVTPSNDGSVIRLPFPALTEERRRELVKQCKGYAEEAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN RRD ++++ K ED + ++QK+TD I +D F++K+ E+M Sbjct: 126 VAVRNARRDANSAIERAVKEDSLPEDDERRGQAEVQKLTDKYIAEVDEAFKKKEAEVMEI 185 >gi|73748219|ref|YP_307458.1| ribosome recycling factor [Dehalococcoides sp. CBDB1] gi|289432268|ref|YP_003462141.1| ribosome recycling factor [Dehalococcoides sp. GT] gi|123620145|sp|Q3ZZC4|RRF_DEHSC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|73659935|emb|CAI82542.1| ribosome recycling factor [Dehalococcoides sp. CBDB1] gi|288945988|gb|ADC73685.1| ribosome recycling factor [Dehalococcoides sp. GT] Length = 185 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 114/177 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 LQ + +M ++ L +++ +RTGR SP++++ ++VE G P+N +AN++ +PR + Sbjct: 6 LQKSEKKMSASLDVLLQELSGIRTGRSSPALVEHIRVEYAGVPTPINHLANISAPDPRYI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WD+ ++++E+ I +S+LGL P +G ++R+ +P +EERR ++K+ + E+ K Sbjct: 66 TIQPWDRSCLSAIEKAIMKSDLGLMPNNDGNIIRLNIPPLSEERRQEMIKIVNKRLEEDK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 I++RN+RRD MD +KK K+ + S+D + + +QKITD+ I D +K+ E+ Sbjct: 126 IAMRNVRRDAMDEMKKLEKAKEISQDDLKRGSDQLQKITDNFIAKADKLGADKEAEL 182 >gi|269217144|ref|ZP_06160998.1| ribosome recycling factor [Slackia exigua ATCC 700122] gi|269129281|gb|EEZ60366.1| ribosome recycling factor [Slackia exigua ATCC 700122] Length = 186 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 69/171 (40%), Positives = 104/171 (60%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M +S LK+ +RTGR + +LD VKV+ YG P+NQ+A V V + ML + WDK Sbjct: 14 MEKALSNLKEAFAGVRTGRANAMVLDKVKVDYYGVPTPVNQMAAVKVPDAHMLTIEPWDK 73 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 MV ++E I S+LG+ P +G V+R+P P+ TEERR L K ++E+ +++VR R Sbjct: 74 SMVRAIEAAILASDLGITPSNDGSVIRLPFPQLTEERRRDLAKQCKTFSEEGRVAVRKAR 133 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++K +K+ + SED E IQK+TDS IK +D F++K+ E+M Sbjct: 134 GAANAAVEKLKKASEISEDDARRDEESIQKLTDSYIKKVDEMFKKKEAELM 184 >gi|256390730|ref|YP_003112294.1| ribosome recycling factor [Catenulispora acidiphila DSM 44928] gi|256356956|gb|ACU70453.1| ribosome recycling factor [Catenulispora acidiphila DSM 44928] Length = 185 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 67/178 (37%), Positives = 106/178 (59%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K+D+ +RTGR +P+M + + YGS PL+Q+A+ V + RM+ Sbjct: 6 LLEAEEKMDKAVEVAKEDLSGVRTGRANPAMFSKLTADYYGSPTPLSQMASFQVQDARMV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V++ +DK + ++ER I +S+LG+NP +G V+R+ P+ TEERR +KVA E +K Sbjct: 66 VIAPYDKTALGAIERSIRDSDLGVNPSSDGVVIRVVFPQLTEERRKEYIKVAKTKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ISVRNIRR + L K K G A ED V E + ++T ID + K+ E++ Sbjct: 126 ISVRNIRRHSKESLDKLAKDGDAGEDDVRRAEKHLDELTQKHTAQIDEMLKHKEAELL 183 >gi|317177998|dbj|BAJ55787.1| ribosome recycling factor [Helicobacter pylori F16] Length = 185 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 68/174 (39%), Positives = 107/174 (61%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 KD M +I L +D TLR+ +VS ++LD +KV+ YG+ LNQV ++ L+ L +S Sbjct: 10 KDLMQKSIQALNRDFSTLRSAKVSVNILDHIKVDYYGTPTALNQVGSMMSLDATTLQISP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 W+K ++ +ER I E+N+G+NP +G+ +++ P T ++R + K A A EK+K++VR Sbjct: 70 WEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTTDQRKLIAKDAKAMGEKAKVAVR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 NIR+D + +KK K + SED + IQKITD IK ID + K+ I+ Sbjct: 130 NIRQDANNKIKKLEKDKEISEDESKKAQEQIQKITDEAIKTIDESVKNKEDAIL 183 >gi|224418730|ref|ZP_03656736.1| ribosome recycling factor [Helicobacter canadensis MIT 98-5491] gi|253826742|ref|ZP_04869627.1| ribosome releasing factor [Helicobacter canadensis MIT 98-5491] gi|253510148|gb|EES88807.1| ribosome releasing factor [Helicobacter canadensis MIT 98-5491] Length = 186 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 62/174 (35%), Positives = 110/174 (63%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 ++ M +I +KK+ TLR+G+VS ++LD +++ Y + PLNQ+ +V + +V++ Sbjct: 11 QESMNKSIESMKKEFSTLRSGKVSVAILDHIRISYYDTPTPLNQIGSVIAQDASTIVITP 70 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 W+K ++ +ER I E+N+G+NP +G+ +++ P T E+R + K A EK+KI++R Sbjct: 71 WEKNLLKEIERAIQEANIGVNPNNDGETIKLFFPPMTSEQRKEIAKEAKNIGEKAKIAIR 130 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 NIR+D D +KK K SED + +IQK+TD+ +K ID + K++E++ Sbjct: 131 NIRKDSNDKVKKLEKDKVVSEDESKKGQEEIQKLTDNAVKKIDELVKHKEEELL 184 >gi|217032316|ref|ZP_03437812.1| hypothetical protein HPB128_132g14 [Helicobacter pylori B128] gi|298735720|ref|YP_003728245.1| ribosome recycling factor [Helicobacter pylori B8] gi|216945982|gb|EEC24596.1| hypothetical protein HPB128_132g14 [Helicobacter pylori B128] gi|298354909|emb|CBI65781.1| ribosome recycling factor [Helicobacter pylori B8] Length = 185 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 68/174 (39%), Positives = 106/174 (60%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 KD M ++ L +D TLR+ +VS ++LD +KV+ YG+ LNQV +V L+ L +S Sbjct: 10 KDLMQKSVQALNRDFSTLRSAKVSVNILDHIKVDYYGTPTALNQVGSVMSLDATTLQISP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 W+K ++ +ER I E+N+G+NP +G+ +++ P T E+R + K A A EK+K++VR Sbjct: 70 WEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTTEQRKLIAKDAKAMGEKAKVAVR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 N R+D + +KK K + SED + IQKITD IK ID + K+ I+ Sbjct: 130 NTRQDANNKIKKLEKDKEISEDESKKAQEQIQKITDEAIKKIDESVKNKEDAIL 183 >gi|224534946|ref|ZP_03675515.1| ribosome recycling factor [Borrelia spielmanii A14S] gi|224513886|gb|EEF84211.1| ribosome recycling factor [Borrelia spielmanii A14S] Length = 184 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 67/173 (38%), Positives = 107/173 (61%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 ++M + L + TLRTGR++ ++ D + + +G P+ QV+++ + E R++V+ W Sbjct: 10 EKMSKVLLSLDNEYKTLRTGRINSNIFDKIYINYHGQRTPITQVSSIRIPEARLVVIQPW 69 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 DK ++ +E+ I S+L +NP +G V+RI VP T ERR +VK A AE+ KIS RN Sbjct: 70 DKTILNKIEQAILNSDLSMNPSSDGSVIRIKVPALTSERRQDIVKHAKKIAEEHKISTRN 129 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 IR++ + +KK K + +ED + + +DIQK TD IK ID+ E K +EIM Sbjct: 130 IRQELKNKVKKQEKESEITEDSLKRILDDIQKSTDLCIKRIDTILESKIQEIM 182 >gi|332670031|ref|YP_004453039.1| ribosome recycling factor [Cellulomonas fimi ATCC 484] gi|332339069|gb|AEE45652.1| ribosome recycling factor [Cellulomonas fimi ATCC 484] Length = 185 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 65/179 (36%), Positives = 107/179 (59%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K D T+RTGR + +M V V+ YGS PL Q+A+ V E R + Sbjct: 6 LLEAEEKMDKAVEVAKDDFATIRTGRANAAMFSKVFVDYYGSPTPLQQLASFNVTEARTI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +VS +DK ++E+ + +S+LG+NP +G V+R+ +P TEERR VK+A A AE ++ Sbjct: 66 LVSPFDKSSTTAIEKALRDSDLGVNPTNDGNVIRVVLPALTEERRRDFVKLAKAKAEDAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +SVR++RR + L + K G+A ED V E +++ +T ++ ID K+ E++ Sbjct: 126 VSVRSVRRKAKEELDRIVKDGEAGEDEVVRAEKELEALTKKHVETIDHLLASKESELLE 184 >gi|326803584|ref|YP_004321402.1| ribosome recycling factor [Aerococcus urinae ACS-120-V-Col10a] gi|326651583|gb|AEA01766.1| ribosome recycling factor [Aerococcus urinae ACS-120-V-Col10a] Length = 186 Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 66/185 (35%), Positives = 117/185 (63%), Gaps = 4/185 (2%) Query: 5 IDLQNI----KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +D+ N+ K+RM + L+ ++ +R G + S+L+ + VE YG PLNQ+A++T+ Sbjct: 1 MDINNLFTETKNRMKKSEQSLQNELGKIRAGVANASLLNGIYVEYYGVDTPLNQIASITI 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPRML+V+ +D+ + +++R I S++G+ P +G+ +R+ +P T+ERR L K+ Sbjct: 61 PEPRMLMVTPYDRSALDNIDRAIQMSDIGIAPTNDGEKIRLVIPALTQERRQELSKLVGR 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E +KI++RNIRRD D +KK+ K G+ +ED E ++QKITD + ++ +K+ Sbjct: 121 DLEDAKIAIRNIRRDANDTIKKAEKDGEITEDDARRNEKEVQKITDEVTERLEKIASDKE 180 Query: 181 KEIMH 185 EI++ Sbjct: 181 DEILN 185 >gi|109946849|ref|YP_664077.1| ribosome recycling factor [Helicobacter acinonychis str. Sheeba] gi|123362775|sp|Q17Z48|RRF_HELAH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|109714070|emb|CAJ99078.1| frr [Helicobacter acinonychis str. Sheeba] Length = 185 Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 68/174 (39%), Positives = 107/174 (61%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 KD M +I L ++ TLR+ +VS ++LD +KV+ YG+ LNQV +V L+ L +S Sbjct: 10 KDLMQKSIQALNREFSTLRSAKVSVNILDHIKVDYYGTPTALNQVGSVMSLDATTLQISP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 W+K ++ +ER I E+N+G+NP +G+ +++ P T E+R + K A A EK+K++VR Sbjct: 70 WEKNLLKEIERAIQEANIGVNPNNDGETIKLFFPPMTTEQRKLIAKDAKAMGEKAKVAVR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 NIR+D + +KK K + SED + +QKITD IK ID + K+ I+ Sbjct: 130 NIRQDANNKVKKLEKDKEISEDESKKAQEQVQKITDEAIKKIDESVKNKEDAIL 183 >gi|223038376|ref|ZP_03608670.1| ribosome recycling factor [Campylobacter rectus RM3267] gi|222880233|gb|EEF15320.1| ribosome recycling factor [Campylobacter rectus RM3267] Length = 185 Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 68/184 (36%), Positives = 112/184 (60%), Gaps = 2/184 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ Q K+ I LK+D TLRTG+V+ S++D + V+ YGS PLNQVA + Sbjct: 2 LNEIYKKQ--KEHSDKCIEGLKRDFSTLRTGKVNISIVDNIYVDYYGSQTPLNQVATILT 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + + ++ W+K M+ ++ I +N+G+NP +G+ +++ P T E+R K A A Sbjct: 60 SDASTISITPWEKPMLKTITAAISAANIGVNPNNDGESVKLFFPPMTVEQRHENAKHAKA 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 + EK+K+S+RNIR+D D +KK K +ED ++++QKITDS IDS +EK+ Sbjct: 120 FGEKAKVSIRNIRKDANDEVKKLEKDKSITEDESKKGQDEVQKITDSYTSKIDSLVKEKE 179 Query: 181 KEIM 184 E++ Sbjct: 180 SELL 183 >gi|313142247|ref|ZP_07804440.1| ribosome recycling factor [Helicobacter canadensis MIT 98-5491] gi|313131278|gb|EFR48895.1| ribosome recycling factor [Helicobacter canadensis MIT 98-5491] Length = 184 Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 62/174 (35%), Positives = 110/174 (63%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 ++ M +I +KK+ TLR+G+VS ++LD +++ Y + PLNQ+ +V + +V++ Sbjct: 9 QESMNKSIESMKKEFSTLRSGKVSVAILDHIRISYYDTPTPLNQIGSVIAQDASTIVITP 68 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 W+K ++ +ER I E+N+G+NP +G+ +++ P T E+R + K A EK+KI++R Sbjct: 69 WEKNLLKEIERAIQEANIGVNPNNDGETIKLFFPPMTSEQRKEIAKEAKNIGEKAKIAIR 128 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 NIR+D D +KK K SED + +IQK+TD+ +K ID + K++E++ Sbjct: 129 NIRKDSNDKVKKLEKDKVVSEDESKKGQEEIQKLTDNAVKKIDELVKHKEEELL 182 >gi|56751022|ref|YP_171723.1| ribosome recycling factor [Synechococcus elongatus PCC 6301] gi|81299318|ref|YP_399526.1| ribosome recycling factor [Synechococcus elongatus PCC 7942] gi|60390663|sp|Q5N3B7|RRF_SYNP6 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|123557390|sp|Q31QY0|RRF_SYNE7 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|56685981|dbj|BAD79203.1| ribosome recycling factor [Synechococcus elongatus PCC 6301] gi|81168199|gb|ABB56539.1| ribosome recycling factor [Synechococcus elongatus PCC 7942] Length = 182 Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 61/178 (34%), Positives = 111/178 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++ M ++ + T+RTGR + S+LD + V+ YGS PL +A+++ + L Sbjct: 3 LADVESTMQKSVEATLRSFNTIRTGRANASLLDKIVVDYYGSETPLKSLASISTPDASTL 62 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + +D+ + ++E+ I S++GL P +GQ++R+ +P T +RR LVK+A YAE+ K Sbjct: 63 QIQPFDRSSMGAIEKAISLSDIGLTPNNDGQIIRLNIPPLTSDRRKELVKLAAKYAEEGK 122 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++RN+RRD +D ++K KSG+ SED ++ +QK+TD ++ +K+K+IM Sbjct: 123 VAIRNVRRDAIDSIRKLEKSGEISEDDARDQQDQVQKLTDKFSAKVEQLLSDKEKDIM 180 >gi|171742888|ref|ZP_02918695.1| hypothetical protein BIFDEN_02005 [Bifidobacterium dentium ATCC 27678] gi|171278502|gb|EDT46163.1| hypothetical protein BIFDEN_02005 [Bifidobacterium dentium ATCC 27678] Length = 186 Score = 131 bits (330), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 68/185 (36%), Positives = 107/185 (57%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 MN + K +M ++ K++ +RTGR +P++ + + V+ YG+ PL VA + V Sbjct: 1 MNMANIVDQAKAQMAKSVESTKENFSGIRTGRANPALFNGITVDYYGAPTPLKAVATIGV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPR L V+ +D +VE+ + +S+LG +P +G V+R+ +PE TEERR VK+A Sbjct: 61 PEPRTLSVTPFDASQANAVEKALRDSDLGASPRRDGNVIRLTMPELTEERRKEYVKLAKG 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE K++VRNIRR + + K+ K G ED L ++ K+T T +D+ E K+ Sbjct: 121 KAEDGKVAVRNIRRKTKESIDKAIKDGDMGEDEGDRLLKELDKVTKQTTDELDTLLEAKQ 180 Query: 181 KEIMH 185 KEIM Sbjct: 181 KEIME 185 >gi|313896240|ref|ZP_07829793.1| ribosome recycling factor [Selenomonas sp. oral taxon 137 str. F0430] gi|320529259|ref|ZP_08030351.1| ribosome recycling factor [Selenomonas artemidis F0399] gi|312975039|gb|EFR40501.1| ribosome recycling factor [Selenomonas sp. oral taxon 137 str. F0430] gi|320138889|gb|EFW30779.1| ribosome recycling factor [Selenomonas artemidis F0399] Length = 185 Score = 131 bits (330), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 64/173 (36%), Positives = 108/173 (62%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M I L+++ +LR GR +P++LD V V YG+ +NQ+A VTV EP M+V++ W+K Sbjct: 13 MTKAIESLRREFSSLRAGRATPNLLDKVMVPYYGTPTSVNQLAKVTVPEPHMIVITPWEK 72 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 ++ +E I +S+LGL+P +G V+R+ +P+ T+ERR L+K E++K+++RNIR Sbjct: 73 SVLHDIEIAISKSDLGLSPNSDGNVIRLAIPQPTQERRKELIKTVGKKTEEAKVALRNIR 132 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RD + +KK K + +ED + +QK+ D +K ++ K+KE+M Sbjct: 133 RDANEAIKKLEKDKEINEDESKRGQESVQKLVDKFVKQMEEMRAAKEKEVMEI 185 >gi|226954086|ref|ZP_03824550.1| ribosome releasing factor [Acinetobacter sp. ATCC 27244] gi|226835127|gb|EEH67510.1| ribosome releasing factor [Acinetobacter sp. ATCC 27244] Length = 184 Score = 131 bits (330), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 71/177 (40%), Positives = 109/177 (61%), Gaps = 1/177 (0%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ +DRM ++ L+ +RTGR PS+L+ V V YGS VPLNQVAN+ + + R L+ Sbjct: 7 KDAEDRMNKSLDSLEHGFAKVRTGRAHPSILNGVMVPYYGSDVPLNQVANIGLEDSRTLL 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +++ MV+++++ I E+ LGLNPI +R+P+ TEE R + KVA AE +K+ Sbjct: 67 VQPFERSMVSAIDKAIREAGLGLNPIT-ADAIRVPMAALTEETRRDMQKVARNEAENAKV 125 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 S+RNIRRD + +K K + SED ++IQKITD + +D K+ E+M Sbjct: 126 SIRNIRRDVLGDIKALLKEKEISEDDDRRASDEIQKITDKFVAEVDKRLAAKEAELM 182 >gi|302558125|ref|ZP_07310467.1| ribosome recycling factor [Streptomyces griseoflavus Tu4000] gi|302475743|gb|EFL38836.1| ribosome recycling factor [Streptomyces griseoflavus Tu4000] Length = 185 Score = 131 bits (330), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 63/179 (35%), Positives = 107/179 (59%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K+D +RTGR P+M + + + YG+ P+NQ+A+ +V EPRM Sbjct: 6 LLEAEEKMEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGAPTPINQLASFSVPEPRMA 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV+ +DK + ++E+ I +S+LG+NP +G ++R+ PE TEERR +KVA A AE +K Sbjct: 66 VVTPFDKSALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEERRRDYIKVAKAKAEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +S+R++RR D + K K G+ ED E ++ T + +D + K+ E++ Sbjct: 126 VSIRSVRRKAKDAIDKMIKDGEVGEDEGRRAEKELDDTTAKYVAQVDELLKHKEAELLE 184 >gi|297622140|ref|YP_003710277.1| Ribosome recycling factor [Waddlia chondrophila WSU 86-1044] gi|297377441|gb|ADI39271.1| Ribosome recycling factor [Waddlia chondrophila WSU 86-1044] Length = 183 Score = 131 bits (330), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 65/171 (38%), Positives = 104/171 (60%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M +I L ++ +RTG+ +P+ML+ V VE YG+ + L VA++T EPR L+V+ +D Sbjct: 10 KMKASIDHLTDELKKIRTGQANPAMLENVTVEVYGTSMKLRDVASITTPEPRQLLVTPYD 69 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + +GI ++NLG PIV+ V+RI +P+ E R +VK+ H E++K+S+RN+ Sbjct: 70 ANNTQVIGKGIEKANLGFRPIVDANVVRITIPQMDESVRQEMVKLCHKKREEAKVSIRNV 129 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 RRD + ++K + G+ EDM E DIQ +TD K D K+KE+ Sbjct: 130 RRDSNEAVRKQKTDGEIGEDMEKKFEKDIQILTDKYCKIADDVSSVKEKEV 180 >gi|260905212|ref|ZP_05913534.1| ribosome recycling factor [Brevibacterium linens BL2] Length = 185 Score = 131 bits (330), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 59/179 (32%), Positives = 108/179 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + F ++D ++RTGR +P++ ++++ YG+ PL Q+A+ E R + Sbjct: 6 LAEAREKMDKAVEFTQEDFSSIRTGRANPALFASIEIDYYGAPTPLQQLASFQTPEARTI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +D+ + +E + S++G NP +G V+R+ +PE TEERR VK+ AE K Sbjct: 66 LVTPYDRGALGDIETALRNSDIGANPANDGNVIRVVLPELTEERRKEYVKIVKGKAEDGK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +S+RNIRR + L++ +K G A ED VA +++ +T S + N+D +K+ E++ Sbjct: 126 VSIRNIRRHAKETLERIKKDGDAGEDEVARGISELDDLTKSKVDNVDKLLNQKEAELLE 184 >gi|319901066|ref|YP_004160794.1| ribosome recycling factor [Bacteroides helcogenes P 36-108] gi|319416097|gb|ADV43208.1| ribosome recycling factor [Bacteroides helcogenes P 36-108] Length = 186 Score = 131 bits (330), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 72/178 (40%), Positives = 104/178 (58%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K+ M + +L++ + +R G+ +LD ++V++YGS VP+N VA VT + R + Sbjct: 8 LDEAKESMDMAVMYLEEALAHIRAGKADIRLLDGIRVDSYGSMVPINNVAAVTTPDARSI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK M +E+ I +S+LG+ P G+++RI +P TEERR L K E +K Sbjct: 68 TIKPWDKGMFRIIEKAIIDSSLGIMPENNGEIIRIGIPPLTEERRKQLAKQCKGEGETAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +SVRN RRD +D LKK+ K G A ED E +QKI D IK I+ K KEIM Sbjct: 128 VSVRNARRDAIDGLKKAVKDGLA-EDAQKGGEEKLQKIHDKYIKQIEDMLAAKDKEIM 184 >gi|237724285|ref|ZP_04554766.1| ribosome-recycling factor [Bacteroides sp. D4] gi|229437473|gb|EEO47550.1| ribosome-recycling factor [Bacteroides dorei 5_1_36/D4] Length = 186 Score = 131 bits (329), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 66/178 (37%), Positives = 108/178 (60%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + + +++M + +L++ + +R G+ S +LD ++V++YGS VP++ VA VT + R + Sbjct: 8 INDAQEKMDMAVMYLEEALAHIRAGKASTRLLDGIRVDSYGSMVPISNVAAVTTPDARSI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK M +E+ I +S+LG+ P G+++R+ +P TEERR L K E +K Sbjct: 68 AIKPWDKSMFRIIEKAIMDSDLGITPENNGEIIRLGIPPLTEERRKQLAKQCKGEGETAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +S+RN RRD +D LKK+ K G ED + E +QK+ D I+ I+ EK KEIM Sbjct: 128 VSIRNARRDAIDTLKKAVKEG-MPEDEQKNAEAKLQKVHDKYIEKIEELLAEKDKEIM 184 >gi|270307747|ref|YP_003329805.1| ribosome recycling factor [Dehalococcoides sp. VS] gi|270153639|gb|ACZ61477.1| ribosome recycling factor [Dehalococcoides sp. VS] Length = 185 Score = 131 bits (329), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 61/177 (34%), Positives = 113/177 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 LQ + +M ++ L +++ +RTGR SP++++ ++VE G P+N +A ++ +PR + Sbjct: 6 LQKSEKKMTASLDVLSQELSGIRTGRSSPALVEHIRVEYAGVPTPINHLAGISAPDPRYI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK ++++E+ I +S+LGL P +G ++R+ +P +EERR ++K+ + E+ K Sbjct: 66 TIQPWDKSCLSAIEKAIMKSDLGLMPNNDGNIIRLNIPPLSEERRQEMIKMVNKRLEEDK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 I++RN+RRD MD +KK K+ + S+D + + +QKITDS I D +K+ E+ Sbjct: 126 IAMRNVRRDAMDEMKKLEKAKEISQDDLKRGSDQLQKITDSFIAKADKLGADKETEL 182 >gi|308185004|ref|YP_003929137.1| ribosome recycling factor [Helicobacter pylori SJM180] gi|308060924|gb|ADO02820.1| ribosome recycling factor [Helicobacter pylori SJM180] Length = 185 Score = 131 bits (329), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 68/174 (39%), Positives = 106/174 (60%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 KD M +I L +D TLR+ +VS ++LD +KV+ YG+ LNQV +V L+ + +S Sbjct: 10 KDLMQKSIQALNRDFSTLRSAKVSVNILDHIKVDYYGTPTALNQVGSVMSLDATTIQISP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 W+K ++ +ER I E+N+G+NP +G+ +++ P T E+R + K A A EK+K++VR Sbjct: 70 WEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTSEQRKLIAKDAKAMGEKAKVAVR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 N R+D + +KK K + SED + IQKITD IK ID + K+ I+ Sbjct: 130 NTRQDANNKVKKLEKDKEISEDESKKAQEQIQKITDEAIKKIDESVKNKEDAIL 183 >gi|198283287|ref|YP_002219608.1| ribosome recycling factor [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667967|ref|YP_002425875.1| ribosome recycling factor [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247808|gb|ACH83401.1| ribosome recycling factor [Acidithiobacillus ferrooxidans ATCC 53993] gi|218520180|gb|ACK80766.1| ribosome recycling factor [Acidithiobacillus ferrooxidans ATCC 23270] Length = 186 Score = 131 bits (329), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 69/183 (37%), Positives = 112/183 (61%), Gaps = 4/183 (2%) Query: 7 LQNIKD----RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLE 62 +Q IK RM +I LK ++ LRTGR S +LD V+++ YG+ PL QVA+V+V + Sbjct: 3 IQGIKKDSEARMKKSIESLKGELTRLRTGRASAGLLDHVQLDYYGAPTPLAQVASVSVAD 62 Query: 63 PRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 R L+V+ W+K ++ +++ I ++ LGLNP+ +R+P+P +EERR +VKV Sbjct: 63 ARSLLVTPWEKNLIPKIDKAIRDAGLGLNPVAGSDNVRVPLPALSEERRKEMVKVVRQEG 122 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 E +++++RNIRRD + +K+ K SED E + QK+TD I +D+ E K+ + Sbjct: 123 EGARVAIRNIRRDSISQVKELHKQKAISEDEERRAEEEFQKLTDRYIDEVDAVVEAKEAD 182 Query: 183 IMH 185 +M Sbjct: 183 LME 185 >gi|73667372|ref|YP_303388.1| ribosome recycling factor [Ehrlichia canis str. Jake] gi|123614722|sp|Q3YR65|RRF_EHRCJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|72394513|gb|AAZ68790.1| ribosome recycling factor [Ehrlichia canis str. Jake] Length = 185 Score = 131 bits (329), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 69/178 (38%), Positives = 107/178 (60%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ K+RM T+S D+ +RTGR S+LD + VE YG V LN +++++V + + L+ Sbjct: 7 QDAKNRMEKTLSVYLSDIDGIRTGRARTSVLDGIVVETYGGRVKLNTISSISVSDNKTLM 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + VWD + +++ I SNLG E +R+ VPE T++ R LVK+ +E ++ Sbjct: 67 IKVWDSNNIGAIKTAIMNSNLGFGFSCEATTIRLTVPEMTQDMRKNLVKLLGKISEDCRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 SVRNIRRD MD LK + + + SED + +IQKITD +K I+ F K+KE++ Sbjct: 127 SVRNIRRDIMDKLKVMQDNKEISEDDLRVSGTEIQKITDDVMKKINDAFSSKEKELLQ 184 >gi|256820725|ref|YP_003142004.1| ribosome recycling factor [Capnocytophaga ochracea DSM 7271] gi|256582308|gb|ACU93443.1| ribosome recycling factor [Capnocytophaga ochracea DSM 7271] Length = 184 Score = 131 bits (329), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 71/186 (38%), Positives = 110/186 (59%), Gaps = 6/186 (3%) Query: 1 MNQVID--LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 MN+ I+ L+ + M + + L K + +R G+ SP M+ V V+ YG+ PL+QVANV Sbjct: 1 MNEEINIILETTSEAMQEALQHLDKALANIRAGKASPQMVSSVMVDYYGAQTPLSQVANV 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 + + R + + W+K+M+ +E+ I +NLG NP+ G+++ I VP TEERR LVK A Sbjct: 61 SAPDSRTISIQPWEKKMIQPIEKAIQIANLGFNPMNNGEMVIITVPPLTEERRRELVKQA 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 E +KISVRN R+D +KK +AS+D+ E +QK+TD IK ++ Sbjct: 121 KGEGEDAKISVRNARQDANKEIKKV----EASDDVKKEAEERVQKLTDKYIKKVEEVLAV 176 Query: 179 KKKEIM 184 K+ EI+ Sbjct: 177 KEAEIL 182 >gi|311748532|ref|ZP_07722317.1| ribosome recycling factor [Algoriphagus sp. PR1] gi|126577048|gb|EAZ81296.1| ribosome recycling factor [Algoriphagus sp. PR1] Length = 186 Score = 131 bits (329), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 69/178 (38%), Positives = 107/178 (60%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K+ M + +++ +R G+ P++LD + V+ YG+ PLNQVA+V+ + R L Sbjct: 8 LDEAKELMQKAVDHTAAELLKIRAGKAMPNLLDGIMVQYYGAPTPLNQVASVSTPDARTL 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + W+K ++ +E+ I S+LGL P G+++ + +P TEERR+ LVK A E K Sbjct: 68 SIKPWEKGLIPDIEKAIINSDLGLAPQNNGELVILTIPALTEERRINLVKQAKHECENGK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ISVR +R+D D LKK +K G ASED V E+ +QK+TD +D E+K+ +IM Sbjct: 128 ISVRTVRKDTNDSLKKLQKDG-ASEDEVKRAEDVVQKLTDQYSSKLDDLLEKKEADIM 184 >gi|315223859|ref|ZP_07865707.1| ribosome recycling factor [Capnocytophaga ochracea F0287] gi|314946189|gb|EFS98190.1| ribosome recycling factor [Capnocytophaga ochracea F0287] Length = 184 Score = 131 bits (329), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 71/186 (38%), Positives = 110/186 (59%), Gaps = 6/186 (3%) Query: 1 MNQVID--LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 MN+ I+ L+ + M + + L K + +R G+ SP M+ V V+ YG+ PL+QVANV Sbjct: 1 MNEEINIILETTSEAMQEALQHLDKALANIRAGKASPQMVSSVMVDYYGAQTPLSQVANV 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 + + R + + W+K+M+ +E+ I +NLG NP+ G+++ I VP TEERR LVK A Sbjct: 61 SAPDSRTISIQPWEKKMIQPIEKAIQIANLGFNPMNNGEMVIITVPPLTEERRKELVKQA 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 E +KISVRN R+D +KK +AS+D+ E +QK+TD IK ++ Sbjct: 121 KGEGEDAKISVRNARQDANKEIKKV----EASDDVKKEAEERVQKLTDKYIKKVEEVLAV 176 Query: 179 KKKEIM 184 K+ EI+ Sbjct: 177 KEAEIL 182 >gi|307111396|gb|EFN59630.1| hypothetical protein CHLNCDRAFT_29191 [Chlorella variabilis] Length = 255 Score = 131 bits (329), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 66/180 (36%), Positives = 108/180 (60%), Gaps = 8/180 (4%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV- 70 ++M ++ +K+ T+RTGR + +MLD ++ + YG+ PL VA+V+ E +LV+ Sbjct: 73 EKMEKSVESVKRSFGTVRTGRANAAMLDRIEFDYYGAMTPLRTVASVSTPESTLLVIQAR 132 Query: 71 -------WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAE 123 +D + ++ER I +S+LGL P +G+V+R+ VP+ T ERR +VK+ E Sbjct: 133 ALLAAAPYDTSAIPAIERAIMQSDLGLTPNNDGRVIRLQVPQLTAERRKEMVKIVSKLGE 192 Query: 124 KSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 + K++VRN+RRD M ++K K G SED LEN +QK+TD +K I+ + K E+ Sbjct: 193 EGKVAVRNVRRDAMKAIEKLEKDGGISEDQRKDLENAVQKLTDEYVKEIEGLAKSKSDEL 252 >gi|283456086|ref|YP_003360650.1| ribosome Recycling Factor (RRF) [Bifidobacterium dentium Bd1] gi|283102720|gb|ADB09826.1| Ribosome Recycling Factor (RRF) [Bifidobacterium dentium Bd1] Length = 184 Score = 131 bits (329), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 68/185 (36%), Positives = 108/185 (58%), Gaps = 2/185 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M ++D K +M ++ K++ +RTGR +P++ + + V+ YG+ PL VA + V Sbjct: 1 MANIVD--QAKAQMAKSVESTKENFSGIRTGRANPALFNGITVDYYGAPTPLKAVATIGV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPR L V+ +D +VE+ + +S+LG +P +G V+R+ +PE TEERR VK+A Sbjct: 59 PEPRTLSVTPFDASQANAVEKALRDSDLGASPRRDGNVIRLTMPELTEERRKEYVKLAKG 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE K++VRNIRR + + K+ K G ED L ++ K+T T +D+ E K+ Sbjct: 119 KAEDGKVAVRNIRRKTKESIDKAIKDGDMGEDEGDRLLKELDKVTKQTTDELDTLLEAKQ 178 Query: 181 KEIMH 185 KEIM Sbjct: 179 KEIME 183 >gi|254430178|ref|ZP_05043881.1| ribosome recycling factor [Cyanobium sp. PCC 7001] gi|197624631|gb|EDY37190.1| ribosome recycling factor [Cyanobium sp. PCC 7001] Length = 179 Score = 130 bits (328), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 62/162 (38%), Positives = 105/162 (64%) Query: 23 KDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERG 82 ++ T+RTGR +PS+LD + VE YG+ PL +A+++ + + + + +D + +E+ Sbjct: 16 RNFNTIRTGRANPSLLDKISVEYYGAETPLKSLASLSTPDSQTIQIQPFDTGAMGLIEKA 75 Query: 83 IHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKK 142 I S+LGL +G+V+RI +P TE+RR L K+A YAE+ K+++RN RRDG+D +KK Sbjct: 76 IAMSDLGLTCNNDGRVIRINIPPLTEDRRKELCKIAAKYAEEGKVALRNNRRDGIDRIKK 135 Query: 143 SRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 K G+ SED ++ +QK+TD I+ ++ +EK+ EI+ Sbjct: 136 QEKDGELSEDQSRDEQDKVQKLTDKFIEELEKHLKEKEAEIL 177 >gi|189219823|ref|YP_001940464.1| Ribosome recycling factor [Methylacidiphilum infernorum V4] gi|238692086|sp|B3DXF7|RRF_METI4 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|189186681|gb|ACD83866.1| Ribosome recycling factor [Methylacidiphilum infernorum V4] Length = 186 Score = 130 bits (328), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 67/178 (37%), Positives = 112/178 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + ++++ +LR+G+ P +L V VEAY +H+ L +A +T + +L Sbjct: 7 LLEAEEKMEKAVEKTRQELASLRSGKAHPEILSNVSVEAYETHMKLKDLAAITAPDANLL 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V WD +V S+ + I ES LGLNPIV+ +++RIP+P +EERRL L++VA +E+ + Sbjct: 67 IVQPWDLTLVDSIRKAIEESKLGLNPIVDAKLIRIPIPPLSEERRLELIRVARKISEEGR 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 + +R +RR ++ LKK K SED + E +IQK+TD I+ ID K+K++M Sbjct: 127 VGIRAVRRHCLEELKKLEKEAHLSEDELERAEKEIQKLTDEYIEKIDRILAAKEKDLM 184 >gi|325298509|ref|YP_004258426.1| Ribosome-recycling factor [Bacteroides salanitronis DSM 18170] gi|324318062|gb|ADY35953.1| Ribosome-recycling factor [Bacteroides salanitronis DSM 18170] Length = 186 Score = 130 bits (328), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 71/178 (39%), Positives = 104/178 (58%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++M I +L+ + +R G+ +LD ++V++YGS VP+N VA VT + R + Sbjct: 8 LSSAEEKMDMAIMYLEDALAHIRAGKADVRLLDGIRVDSYGSMVPINNVAAVTTPDARSI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK M +E+ I +S+LG+ P G+++RI +P TEERR L K E +K Sbjct: 68 AIKPWDKSMFRIIEKAIIDSDLGIMPENNGEIIRIGIPPLTEERRKQLAKQCKGEGETAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +SVRN RRD +D LKK+ K G ED + E +QK D IK ID K KEIM Sbjct: 128 VSVRNARRDAIDALKKAVKDG-MPEDEQKNSEAKLQKTHDKYIKQIDDLLAAKDKEIM 184 >gi|296139389|ref|YP_003646632.1| ribosome recycling factor [Tsukamurella paurometabola DSM 20162] gi|296027523|gb|ADG78293.1| ribosome recycling factor [Tsukamurella paurometabola DSM 20162] Length = 185 Score = 130 bits (328), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 62/179 (34%), Positives = 107/179 (59%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++M +S ++D ++RTGR +PSM V V+ YGS P+ Q++++T E R++ Sbjct: 6 LFDAEEKMEKAVSVAREDFQSIRTGRANPSMFAKVMVDYYGSPTPITQISSITTPEARLV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ ++ + ++E I S+LG+NP +GQ++R+ +P+ TEERR LVK + E +K Sbjct: 66 VIKPYEANQLGNIETAIRNSDLGVNPTNDGQLIRVGIPQLTEERRKELVKQVKSKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +S+RN+RR + + K K G A ED + E D+ K T ID + K+ ++M Sbjct: 126 VSIRNVRRKANEQIAKFVKDGDAGEDEGSRAEKDLDKTTAKYTAQIDDLVKHKEADLME 184 >gi|123965820|ref|YP_001010901.1| ribosome recycling factor [Prochlorococcus marinus str. MIT 9515] gi|166230816|sp|A2BVI3|RRF_PROM5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|123200186|gb|ABM71794.1| Ribosome recycling factor [Prochlorococcus marinus str. MIT 9515] Length = 182 Score = 130 bits (328), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 66/177 (37%), Positives = 108/177 (61%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q I+ M ++ +++ T+RTGR + S+LD + VE YG+ P+ +A++ ++ + + Sbjct: 4 QEIQSSMNKSVEATQRNFNTIRTGRANASLLDRISVEYYGAETPIKSLASIATVDSQTIS 63 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +D + ++E+ I S+LG+ P +G+V+RI VP TEERR K+A YAE+ K+ Sbjct: 64 IQPFDISCLQAIEKAISMSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGKV 123 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++RNIRRD +D KK K G S D + +IQK TD I I++ EK+KEI+ Sbjct: 124 ALRNIRRDAVDKEKKDEKEGLISIDESRDNQLEIQKFTDKYISLIETKLSEKEKEIL 180 >gi|154250177|ref|YP_001411002.1| ribosome recycling factor [Fervidobacterium nodosum Rt17-B1] gi|171769433|sp|A7HN62|RRF_FERNB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|154154113|gb|ABS61345.1| ribosome recycling factor [Fervidobacterium nodosum Rt17-B1] Length = 184 Score = 130 bits (328), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 70/180 (38%), Positives = 115/180 (63%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +++M ++ + +++ LRTGR +P++L+ +K++ YG P+ QVA VT E R L Sbjct: 6 IKTTEEKMKKSVEKIAEELKHLRTGRATPAVLEEIKIDYYGVPTPVLQVAQVTT-EERQL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ W++ ++ +E+ I S+LGL P+ +G V+RI P T E+R VK A E+ K Sbjct: 65 VIKPWERNLLNVIEKAILASDLGLTPVNDGTVVRINFPTPTTEQRQKWVKKAKEIVEEGK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD + +K +K+G+ SED LE +IQ +TD + +D FE+K+KEIM F Sbjct: 125 VAVRNIRRDILKDIKDKKKAGEISEDDEKRLEKEIQNLTDKYVAELDKLFEKKEKEIMEF 184 >gi|57168360|ref|ZP_00367494.1| ribosome recycling factor [Campylobacter coli RM2228] gi|305432776|ref|ZP_07401935.1| ribosome recycling factor [Campylobacter coli JV20] gi|57020168|gb|EAL56842.1| ribosome recycling factor [Campylobacter coli RM2228] gi|304444173|gb|EFM36827.1| ribosome recycling factor [Campylobacter coli JV20] Length = 185 Score = 130 bits (328), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 69/184 (37%), Positives = 113/184 (61%), Gaps = 2/184 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++++ Q K + ++ LKKD TLRTG+V+ +LD ++V+ YGS PLNQVA V Sbjct: 2 INEILNKQ--KTQSEKSLEALKKDFTTLRTGKVNTHILDHIQVDYYGSLTPLNQVATVLA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + + ++ W+K M+ ++E I +N+G+NP +G+ +++ P T E+R VK A A Sbjct: 60 SDASTISITPWEKPMLKTIESAIAAANIGVNPNNDGESVKLFFPPMTREQREENVKQAKA 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 EK+K+SVRNIR+D D +KK K SED +++QK+TD+ ID + K+ Sbjct: 120 MGEKAKVSVRNIRKDANDAVKKLEKDKAISEDEAKKAYDEVQKLTDTYTAKIDESVKNKE 179 Query: 181 KEIM 184 E++ Sbjct: 180 SELL 183 >gi|261337802|ref|ZP_05965686.1| ribosome recycling factor [Bifidobacterium gallicum DSM 20093] gi|270277256|gb|EFA23110.1| ribosome recycling factor [Bifidobacterium gallicum DSM 20093] Length = 184 Score = 130 bits (328), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 66/175 (37%), Positives = 105/175 (60%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 KD+M T+ K++ +RTGR +P++L+ + V+ YG+ PL VA + V EPR L ++ Sbjct: 9 KDQMAKTVESTKENFSGIRTGRANPALLNGIVVDYYGAPTPLKAVATIGVPEPRTLSITP 68 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +D +VE+ + +S+LG +P +G V+R+ +PE T ERR VK+A AE K++VR Sbjct: 69 FDASQTNAVEKALRDSDLGASPRRDGNVIRLTMPELTGERRKEYVKLAKTKAEDGKVAVR 128 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 NIRR + + K+ K G+ ED L ++ K+T +D+ E K+KEIM Sbjct: 129 NIRRKAKEAIDKAVKDGEMGEDEGDRLLKELDKLTKQVTDELDTLLEAKQKEIME 183 >gi|190573499|ref|YP_001971344.1| ribosome recycling factor [Stenotrophomonas maltophilia K279a] gi|229890169|sp|B2FIA5|RRF_STRMK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|190011421|emb|CAQ45039.1| putative ribosome recycling factor [Stenotrophomonas maltophilia K279a] Length = 184 Score = 130 bits (328), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 71/177 (40%), Positives = 108/177 (61%), Gaps = 3/177 (1%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYG-SHVPLNQVANVTVLEPRMLV 67 N + RM +I LK + ++RTGR +P++LD V V AYG + PLNQVA+++ + L+ Sbjct: 8 NAQTRMAKSIDALKHTLTSIRTGRATPALLDRVTVNAYGNASTPLNQVASISNADAHSLL 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+ +DK M+ +E+G++ N P G +RI +P TEERR LVK E +KI Sbjct: 68 VTPFDKGMIKEIEKGLY--NAEFTPNTLGTAIRINMPPPTEERRKELVKQVQKEGEGAKI 125 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++RNIR+D + K K SED E+DIQK+TD+ IK++D +K+KE++ Sbjct: 126 AIRNIRQDANKEIAKLVKDKAISEDEKKRGEDDIQKLTDTNIKDVDKVVADKEKELL 182 >gi|51598384|ref|YP_072572.1| ribosome recycling factor [Borrelia garinii PBi] gi|60390245|sp|Q662P1|RRF_BORGA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|51572955|gb|AAU06980.1| ribosome releasing factor [Borrelia garinii PBi] Length = 184 Score = 130 bits (328), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 67/173 (38%), Positives = 107/173 (61%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 ++M + L + TLRTGR+S ++ D + ++ +G P+ QV+++ + E R++V+ W Sbjct: 10 EKMSKVLLSLDNEYKTLRTGRISSNVFDKIFIQYHGQKTPITQVSSIRIPEARLVVIQPW 69 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 DK ++ +E+ I S+L +NP +G V+RI VP T ERR +VK A AE+ K+S RN Sbjct: 70 DKTILNKIEQAILNSDLSMNPSSDGSVIRIKVPALTSERRQDIVKHAKKIAEEHKVSTRN 129 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 IR+D + +KK K + +ED + + +DIQK D IK ID+ E K +EIM Sbjct: 130 IRQDLNNKVKKQEKESEITEDSLKRILDDIQKSIDIYIKRIDTILESKIQEIM 182 >gi|150004420|ref|YP_001299164.1| ribosome recycling factor [Bacteroides vulgatus ATCC 8482] gi|212693687|ref|ZP_03301815.1| hypothetical protein BACDOR_03207 [Bacteroides dorei DSM 17855] gi|237708852|ref|ZP_04539333.1| ribosome recycling factor [Bacteroides sp. 9_1_42FAA] gi|254882855|ref|ZP_05255565.1| ribosome recycling factor [Bacteroides sp. 4_3_47FAA] gi|265755888|ref|ZP_06090355.1| ribosome recycling factor [Bacteroides sp. 3_1_33FAA] gi|294775495|ref|ZP_06741007.1| ribosome recycling factor [Bacteroides vulgatus PC510] gi|319643384|ref|ZP_07998010.1| ribosome-recycling factor [Bacteroides sp. 3_1_40A] gi|166230412|sp|A6L1H8|RRF_BACV8 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|149932844|gb|ABR39542.1| ribosome recycling factor [Bacteroides vulgatus ATCC 8482] gi|212663746|gb|EEB24320.1| hypothetical protein BACDOR_03207 [Bacteroides dorei DSM 17855] gi|229457278|gb|EEO62999.1| ribosome recycling factor [Bacteroides sp. 9_1_42FAA] gi|254835648|gb|EET15957.1| ribosome recycling factor [Bacteroides sp. 4_3_47FAA] gi|263233966|gb|EEZ19567.1| ribosome recycling factor [Bacteroides sp. 3_1_33FAA] gi|294450640|gb|EFG19128.1| ribosome recycling factor [Bacteroides vulgatus PC510] gi|317385013|gb|EFV65966.1| ribosome-recycling factor [Bacteroides sp. 3_1_40A] Length = 186 Score = 130 bits (328), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 66/178 (37%), Positives = 107/178 (60%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + + +++M + +L++ + +R G+ S +LD ++V++YGS VP++ VA VT + R + Sbjct: 8 INDAQEKMDMAVMYLEEALAHIRAGKASTRLLDGIRVDSYGSMVPISNVAAVTTPDARSI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK M +E+ I +S+LG+ P G+++R+ +P TEERR L K E +K Sbjct: 68 AIKPWDKSMFRIIEKAIMDSDLGITPENNGEIIRLGIPPLTEERRKQLAKQCKGEGETAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +S+RN RRD +D LKK+ K G ED + E +QK+ D I I+ EK KEIM Sbjct: 128 VSIRNARRDAIDTLKKAVKEG-MPEDEQKNAEAKLQKVHDKYIAKIEELLAEKDKEIM 184 >gi|194365040|ref|YP_002027650.1| ribosome recycling factor [Stenotrophomonas maltophilia R551-3] gi|238693463|sp|B4SQ19|RRF_STRM5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|194347844|gb|ACF50967.1| ribosome recycling factor [Stenotrophomonas maltophilia R551-3] Length = 184 Score = 130 bits (328), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 70/177 (39%), Positives = 107/177 (60%), Gaps = 3/177 (1%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYG-SHVPLNQVANVTVLEPRMLV 67 N + RM +I LK + ++RTGR +P++LD V V AYG + PLNQVA+++ + L+ Sbjct: 8 NAQTRMAKSIDALKHTLTSIRTGRATPALLDRVTVNAYGNASTPLNQVASISNADAHSLL 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+ +DK M+ +E+G++ N P G +RI +P TEERR L K E +KI Sbjct: 68 VTPFDKSMIKEIEKGLY--NAEFTPNTLGTAIRINMPPPTEERRKELAKQVQKEGEGAKI 125 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++RNIR+D + K K SED E+DIQK+TD+ IK++D +K+KE++ Sbjct: 126 AIRNIRQDANKEIAKLDKDKAISEDEKKRGEDDIQKLTDANIKDVDKVVADKEKELL 182 >gi|32265940|ref|NP_859972.1| ribosome recycling factor [Helicobacter hepaticus ATCC 51449] gi|39932102|sp|Q7VJ10|RRF_HELHP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|32261989|gb|AAP77038.1| ribosome releasing factor [Helicobacter hepaticus ATCC 51449] Length = 185 Score = 130 bits (328), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 61/178 (34%), Positives = 110/178 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +N K M +I L++D TLR+G+VS ++LD V+V+ YG+ PLNQV +V + + Sbjct: 6 FKNAKSHMDKSIESLRRDFSTLRSGKVSVNILDNVRVDYYGTPTPLNQVGSVIAQDATTI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ W+K ++ +E+ I E+N+G+NP + + +++ P T+E+R + K A + EK+K Sbjct: 66 IITPWEKPLIKDIEKSIQEANIGVNPNSDSECVKLFFPPMTQEQRKEIAKNARSMGEKAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++RNIR+D + +KK K +ED +IQ+ TD +K D + K++E+M Sbjct: 126 VAIRNIRQDANNAIKKLEKDKSITEDENKKALEEIQRYTDEFVKKCDEMLKHKEEEVM 183 >gi|282897920|ref|ZP_06305915.1| Ribosome recycling factor [Raphidiopsis brookii D9] gi|281197064|gb|EFA71965.1| Ribosome recycling factor [Raphidiopsis brookii D9] Length = 182 Score = 130 bits (328), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 63/170 (37%), Positives = 105/170 (61%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M T+ ++ ++RTGR + S+LD V+V+ YGS PL ++N+T + +++ +D+ Sbjct: 10 MNKTVEATQRAFNSIRTGRANASLLDKVQVDYYGSPTPLKSLSNITTPDASTILIQPYDR 69 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 + VE+ I S++GL P +G V+R+ +P T +RR LVK+A YAE+ ++ +RNIR Sbjct: 70 SSLNIVEKAISLSDVGLTPSNDGSVVRLNIPPLTSDRRKELVKLAAKYAEEGRVGIRNIR 129 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 RD +D ++K K+G+ SED ++ +QKIT ID EK+K+I Sbjct: 130 RDALDSIRKQEKAGEISEDESRDQQDKLQKITGKYTAKIDELLAEKEKDI 179 >gi|33239972|ref|NP_874914.1| ribosome recycling factor [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|39932093|sp|Q7VD62|RRF_PROMA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|33237498|gb|AAP99566.1| Ribosome recycling factor [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 182 Score = 130 bits (328), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 65/177 (36%), Positives = 108/177 (61%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q ++ M ++ +++ T+RTGR + S+LD + VE YG+ PL +A ++ + + L Sbjct: 4 QEVELNMQKSVEACQRNFNTIRTGRANTSLLDRLTVEYYGADTPLKSLATISTPDSQTLA 63 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +D + +E+ I S+LG P +G+++RI +P TEERR K+A YAE++KI Sbjct: 64 IQPFDLGSLGLIEKAISISDLGFTPNNDGKIIRINIPPLTEERRKQFCKLASKYAEEAKI 123 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 S+RNIRRD ++ +K S K G+ SED ++ IQKIT+ I I+ K++EI+ Sbjct: 124 SLRNIRRDAIEKIKGSEKDGEFSEDQSRDQQDSIQKITNKYINEIEKNLSGKEEEIL 180 >gi|159028125|emb|CAO89732.1| frr [Microcystis aeruginosa PCC 7806] Length = 182 Score = 130 bits (328), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 65/178 (36%), Positives = 107/178 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++D M T+ ++ T+RTGR + S+LD + VE YG PL +A ++ + + Sbjct: 3 LAEVQDHMQKTVESTQRAFNTIRTGRANASLLDRIVVEYYGMETPLKSLATISTPDATTI 62 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + +D+ + ++E+ I S++GL P +GQ +R+ +P T +RR LVK+A AE+ K Sbjct: 63 AIQPFDRTSMGAIEKAISLSDVGLTPSNDGQTIRLNIPPLTSDRRKELVKLAAKLAEEGK 122 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++VRNIRRD +D ++K KS + SED L++ +QK TD I I+ K+K+IM Sbjct: 123 VAVRNIRRDAIDAIRKQEKSHEISEDESRDLQDQVQKSTDKFIAKIEDLLTTKEKDIM 180 >gi|219684827|ref|ZP_03539769.1| ribosome recycling factor [Borrelia garinii PBr] gi|219671772|gb|EED28827.1| ribosome recycling factor [Borrelia garinii PBr] Length = 184 Score = 130 bits (328), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 67/173 (38%), Positives = 107/173 (61%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 ++M + L + TLRTGR+S ++ D + ++ +G P+ QV+++ + E R++V+ W Sbjct: 10 EKMSKVLLSLDNEYKTLRTGRISSNVFDKIFIQYHGQKTPITQVSSIRIPEARLVVIQPW 69 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 DK ++ +E+ I S+L +NP +G V+RI VP T ERR +VK A AE+ K+S RN Sbjct: 70 DKTILNKIEQAILNSDLSMNPSSDGSVIRIKVPALTNERRQDIVKHAKKIAEEHKVSTRN 129 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 IR+D + +KK K + +ED + + +DIQK D IK ID+ E K +EIM Sbjct: 130 IRQDLNNKVKKQEKESEITEDNLKRILDDIQKSIDIYIKRIDTILESKIQEIM 182 >gi|315453412|ref|YP_004073682.1| ribosome recycling factor [Helicobacter felis ATCC 49179] gi|315132464|emb|CBY83092.1| ribosome recycling factor [Helicobacter felis ATCC 49179] Length = 185 Score = 130 bits (328), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 65/174 (37%), Positives = 109/174 (62%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 +++M ++ L +D TLR+G+VS S+++ V+V+ YG+ PLNQV +V + L ++ Sbjct: 10 QNQMHKSLEALLRDFTTLRSGKVSISLVENVRVDYYGTPTPLNQVGSVIASDASTLSITP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 W+K ++ +ER + E+NLG NP +G+ +++ P T E+R + K A EK+K++VR Sbjct: 70 WEKNLLKDIERALQEANLGANPNNDGESVKLFFPPMTSEQRKEIAKEAKGMGEKAKVAVR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 NIR+D + +KK K SED ++QKITDS IK I+ + K++EI+ Sbjct: 130 NIRQDANNQIKKLEKDKAISEDQGKKALAEVQKITDSAIKKIEEVLKHKEEEIL 183 >gi|325286740|ref|YP_004262530.1| Ribosome-recycling factor [Cellulophaga lytica DSM 7489] gi|324322194|gb|ADY29659.1| Ribosome-recycling factor [Cellulophaga lytica DSM 7489] Length = 185 Score = 130 bits (328), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 76/186 (40%), Positives = 107/186 (57%), Gaps = 5/186 (2%) Query: 1 MNQVID--LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 MN+ I+ L + K+ M TI L+K + +R G+ SP ML V V+ YGS PL+QVANV Sbjct: 1 MNEEINFILDSTKESMNGTIDHLEKAFIKIRAGKASPVMLSSVMVDYYGSATPLSQVANV 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 + R + V W+K M+ +E+ I SNLG NP+ G + I VP TEERR L K A Sbjct: 61 NTPDARTISVQPWEKNMLQEIEKAIMNSNLGFNPMNNGDFVIINVPPLTEERRRDLAKQA 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 A+ +KI +RN R++ K+ R ASED+ + E D+Q +T+ K ID+ Sbjct: 121 KGEADDAKIGIRNARQEAN---KEIRALDDASEDLKKNAEADVQDLTNLYTKKIDALLVT 177 Query: 179 KKKEIM 184 K+ EIM Sbjct: 178 KEAEIM 183 >gi|269127613|ref|YP_003300983.1| ribosome recycling factor [Thermomonospora curvata DSM 43183] gi|268312571|gb|ACY98945.1| ribosome recycling factor [Thermomonospora curvata DSM 43183] Length = 185 Score = 130 bits (328), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 74/179 (41%), Positives = 112/179 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M ++ K+D +RTGRV+P+M + + YG+ P+NQ+A+ T+ EPRM+ Sbjct: 6 LFEAEEKMEKAVAVAKEDFAGIRTGRVTPAMFSKITADYYGTPTPINQLASFTLPEPRMV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V V+DK + +VE+ I ES+LG+NP +G V+R+ PE +EERR VK+A AE+S+ Sbjct: 66 IVQVFDKSSLPAVEKAIRESDLGVNPTNDGNVIRVVFPELSEERRREYVKIAGNKAEESR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 IS+RNIRR D L K K G+A ED V E ++ T + ID E KK E++ Sbjct: 126 ISIRNIRRRAKDSLDKLAKEGEAGEDEVRRAEKELDDATHKYVAKIDELLEHKKAELLE 184 >gi|291514370|emb|CBK63580.1| ribosome recycling factor [Alistipes shahii WAL 8301] Length = 185 Score = 130 bits (327), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 68/172 (39%), Positives = 107/172 (62%), Gaps = 1/172 (0%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM I L+++++ +R G+ SP+ L+ V V+ +GS VP++ A+VTV + R +++ WD Sbjct: 13 RMQKAIDHLEEELLNVRAGKASPNALNGVMVDYFGSQVPVSGAASVTVPDARTILIQPWD 72 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K M+ +E+ I +SN+GL P G+ +R+ +P TEERR LVK A AE ++IS+RN Sbjct: 73 KNMLRPIEKAIIDSNIGLTPSNNGEQIRLTIPPLTEERRKELVKQVRAEAETARISLRNA 132 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD ++ KK++K G ED E QK+ + K +D +K+KEIM Sbjct: 133 RRDAVEAFKKAQKEG-MPEDESKDGETQSQKLLEKFSKTLDEALSKKEKEIM 183 >gi|224025759|ref|ZP_03644125.1| hypothetical protein BACCOPRO_02500 [Bacteroides coprophilus DSM 18228] gi|224018995|gb|EEF76993.1| hypothetical protein BACCOPRO_02500 [Bacteroides coprophilus DSM 18228] Length = 186 Score = 130 bits (327), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 70/174 (40%), Positives = 102/174 (58%), Gaps = 1/174 (0%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 +++M I +L + + +R G+ +LD +KV++YGS VP+N VA VT + R + + Sbjct: 12 EEKMDMAIMYLDESLAHIRAGKADVRLLDGIKVDSYGSMVPINNVAAVTTPDARSIAIKP 71 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 WDK M +E+ I +S LG+ P G+++R+ +P TEERR L K E +K+SVR Sbjct: 72 WDKSMFRVIEKAIIDSELGIMPENNGEIIRLGIPPLTEERRKQLAKQCKGEGETAKVSVR 131 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 N RRD +D LKK+ K G ED + E +QK+ D IK ID K KEIM Sbjct: 132 NARRDAIDALKKAVKDG-MPEDEQKNSEAKLQKVHDKYIKQIDDMLAAKDKEIM 184 >gi|71892056|ref|YP_277786.1| ribosome recycling factor [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|123641045|sp|Q493C9|RRF_BLOPB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|71796162|gb|AAZ40913.1| ribosome recycling factor [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 188 Score = 130 bits (327), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 69/173 (39%), Positives = 106/173 (61%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M I K ++ + GR+SP++L+ ++V+ YG PL+QVAN V + R L ++V+D Sbjct: 16 MKKCIKNFKTNINNIHIGRISPNILNNIRVDYYGISTPLSQVANAIVEDSRTLAITVFDH 75 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 +++ S E+ I S+L L PI G +R+ +P TEERR L+K+ AEKSKI+VR++R Sbjct: 76 QLIKSTEKAIFMSDLELIPISYGNTIRVTLPALTEERRHTLIKMVRTEAEKSKIAVRSVR 135 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 R D K K+ + +ED +N+IQK+T+ IK ID EK+ E+M F Sbjct: 136 RIANDKTKILLKNKEINEDEEHFFQNEIQKLTNIWIKEIDIILAEKESELMKF 188 >gi|332665961|ref|YP_004448749.1| ribosome-recycling factor [Haliscomenobacter hydrossis DSM 1100] gi|332334775|gb|AEE51876.1| Ribosome-recycling factor [Haliscomenobacter hydrossis DSM 1100] Length = 188 Score = 130 bits (327), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 65/178 (36%), Positives = 113/178 (63%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +++ +++M I LK ++ + TG+ SP+++ + V YG+ P++QVA+V+ + R + Sbjct: 10 MEDAEEQMDKAIEHLKIELSKITTGKASPALVTSLMVAYYGTPTPMSQVASVSTSDSRTI 69 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ W++ M+A +E+ I E+NLG+ P+ +GQV+R+ +P TEERR LVK E+SK Sbjct: 70 VIQPWERSMLAPIEKSIFEANLGVTPMNDGQVVRLSIPPLTEERRRDLVKRCAHLGEESK 129 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 + VR+ RRD ++ +KK+ K+G ED+ LE D ++ I +D + K+KEIM Sbjct: 130 VGVRSGRRDAIEAIKKAVKNG-TPEDLGKKLEEDADNLSKRYIGQVDELVKGKEKEIM 186 >gi|291278553|ref|YP_003495388.1| ribosome recycling factor Frr [Deferribacter desulfuricans SSM1] gi|290753255|dbj|BAI79632.1| ribosome recycling factor Frr [Deferribacter desulfuricans SSM1] Length = 185 Score = 130 bits (327), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 65/180 (36%), Positives = 113/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + +K +M ++++ K+++ +RTGR S ++ + +KV+ YG+ P+ QVA + V +PR++ Sbjct: 6 FEEVKSKMEKSVAYYKEELKGVRTGRASAALFENIKVDYYGTPTPIPQVATIQVPDPRLV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + W+ MV +E+ I S +G NP +G+++R+P+P TEERR L+K+ + AE+++ Sbjct: 66 TIQPWEPNMVPVIEKAIMNSGMGFNPSNDGKMIRVPIPPLTEERRKELMKLVNKMAEEAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 + +RN RR G D +KK K + SED IQ++T+ IK ID +K+KEIM Sbjct: 126 VVIRNERRYGNDKIKKLEKEKEISEDEAKKALEKIQELTNEYIKKIDEITAKKEKEIMEL 185 >gi|294650307|ref|ZP_06727675.1| ribosome recycling factor [Acinetobacter haemolyticus ATCC 19194] gi|292823837|gb|EFF82672.1| ribosome recycling factor [Acinetobacter haemolyticus ATCC 19194] Length = 184 Score = 130 bits (327), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 70/177 (39%), Positives = 109/177 (61%), Gaps = 1/177 (0%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ +DRM ++ L+ +RTGR PS+L+ V V YGS VPLNQVAN+ + + R L+ Sbjct: 7 KDAEDRMNKSLDSLEHGFAKVRTGRAHPSILNGVMVPYYGSDVPLNQVANIGLEDSRTLL 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +++ MV+++++ I E+ LGLNPI +R+P+ TEE R + KVA AE +K+ Sbjct: 67 VQPFERSMVSAIDKAIREAGLGLNPIT-ADAIRVPMAALTEETRRDMQKVARNEAENAKV 125 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++RNIRRD + +K K + SED ++IQKITD + +D K+ E+M Sbjct: 126 AIRNIRRDVLGDIKALLKEKEISEDDDRRASDEIQKITDKFVAEVDKRLAAKEAELM 182 >gi|242080283|ref|XP_002444910.1| hypothetical protein SORBIDRAFT_07g001230 [Sorghum bicolor] gi|241941260|gb|EES14405.1| hypothetical protein SORBIDRAFT_07g001230 [Sorghum bicolor] Length = 265 Score = 130 bits (327), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 66/176 (37%), Positives = 108/176 (61%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K++M I ++ + T+RTGR +P+MLD ++VE YG+ V L +A ++ + L++ Sbjct: 90 KEKMEKAIETVQTNFNTVRTGRANPAMLDRIEVEYYGTPVNLKSIAQISTPDATSLLIQP 149 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +DK + +E+ I +NLG+ P +G+V+R+ VP T +RR L K +E K+++R Sbjct: 150 YDKSSLKLIEKTIVAANLGVTPSNDGEVIRVTVPPLTSDRRKELAKTVAKLSEDGKVAIR 209 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 NIRRD + K +K K SED V L D+QK+TD +K IDS ++K++E+M Sbjct: 210 NIRRDAIKAYDKLQKEKKLSEDNVKDLSADLQKVTDEYMKKIDSIQKQKEQELMKI 265 >gi|298207395|ref|YP_003715574.1| ribosome recycling factor [Croceibacter atlanticus HTCC2559] gi|83850031|gb|EAP87899.1| ribosome recycling factor [Croceibacter atlanticus HTCC2559] Length = 185 Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 72/178 (40%), Positives = 104/178 (58%), Gaps = 3/178 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + + K+ M I L+K ++ +R G+ SP+ML V V+ YGS PLNQV NV + R + Sbjct: 9 IDSTKEDMEKAIKHLEKKLINIRAGKASPAMLSGVMVDYYGSPTPLNQVGNVNTPDARTI 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + ++K M+ +E+ I +NLG NP+ G+ + I VP TEERR L K A AE+SK Sbjct: 69 SIQPFEKSMIQEIEKAIMNANLGFNPMNNGESVIINVPPLTEERRKELAKQAKNEAEESK 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 I VRN R++ +KK ASED+ + E D+Q +TD I ID + K+ EIM Sbjct: 129 IGVRNDRKNANQEIKKLE---DASEDLKKNAEIDVQNLTDKYIAKIDEVYAAKEVEIM 183 >gi|120555456|ref|YP_959807.1| ribosome recycling factor [Marinobacter aquaeolei VT8] gi|120325305|gb|ABM19620.1| ribosome recycling factor [Marinobacter aquaeolei VT8] gi|302608192|emb|CBW44445.1| ribosome recycling factor [Marinobacter hydrocarbonoclasticus] Length = 196 Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 66/157 (42%), Positives = 99/157 (63%) Query: 28 LRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESN 87 +RTGR P++LD V V YG PL QVA+V V + R L V+ W+K +V ++E+ I S+ Sbjct: 38 IRTGRAHPAILDSVMVNYYGQETPLKQVASVNVEDNRTLTVAPWEKNLVPTIEKAIMTSD 97 Query: 88 LGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSG 147 LGLNP G ++R+P+P TEE R +VK A A AE ++S+RN RRD +K+ K Sbjct: 98 LGLNPATSGDIIRVPMPMLTEETRKEMVKQAKADAEHGRVSIRNARRDANHMIKELVKEK 157 Query: 148 KASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 + SED E++IQK+TD I ++ + K++++M Sbjct: 158 EISEDDQHRGEDEIQKLTDKYIAEVEKMLKSKEEDLM 194 >gi|224438526|ref|ZP_03659446.1| ribosome recycling factor [Helicobacter cinaedi CCUG 18818] gi|313144953|ref|ZP_07807146.1| ribosome recycling factor [Helicobacter cinaedi CCUG 18818] gi|313129984|gb|EFR47601.1| ribosome recycling factor [Helicobacter cinaedi CCUG 18818] Length = 185 Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 62/176 (35%), Positives = 109/176 (61%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 N K M TI L++D TLR+G+VS S+LD ++++ YG+ PLNQV +V + +++ Sbjct: 8 NAKSHMEKTIESLRRDFSTLRSGKVSISILDNIRIDYYGTPTPLNQVGSVIAQDATTIII 67 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 + W+K ++ +E+ I E+N+G+NP + + +++ P T+E+R + K A + EK+K++ Sbjct: 68 TPWEKPLLKDIEKAIQEANIGVNPNSDSECVKLFFPPMTQEQRKEIAKQAKSMGEKAKVA 127 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +RNIR+D + +KK K +ED ++IQK TD +K D K++E+M Sbjct: 128 IRNIRQDSNNGIKKLEKDKDITEDEGKKGLDEIQKYTDEFVKKCDDMVRHKEEEVM 183 >gi|307722053|ref|YP_003893193.1| ribosome recycling factor [Sulfurimonas autotrophica DSM 16294] gi|306980146|gb|ADN10181.1| ribosome recycling factor [Sulfurimonas autotrophica DSM 16294] Length = 185 Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 62/172 (36%), Positives = 109/172 (63%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M +I +++D TLRTG+V+ S+LD VK++ YG+ PL+QV +V + +V++ W+ Sbjct: 12 KMQGSIEHMQRDFKTLRTGKVTTSVLDNVKIDYYGTPTPLDQVGSVLAADATTIVINPWE 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K ++ +E I+ +N+G+NP +G ++++ P T E+R VK E +K+S+RN Sbjct: 72 KNLLPDIESAINAANIGVNPNNDGDLIKLFFPPMTVEQRQESVKKMKTMGENAKVSIRND 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD D +KK K + ++D S ++++QKITD I +DS ++K+ EI+ Sbjct: 132 RRDANDKIKKLEKDKEITQDESKSAQDNVQKITDKYITKVDSILKDKEAEIL 183 >gi|302392360|ref|YP_003828180.1| ribosome recycling factor [Acetohalobium arabaticum DSM 5501] gi|302204437|gb|ADL13115.1| ribosome recycling factor [Acetohalobium arabaticum DSM 5501] Length = 185 Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 65/173 (37%), Positives = 110/173 (63%), Gaps = 2/173 (1%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M + I +K D +RTGR PS+++ + + YG+ P+NQ+A V+ EPR LV+ WD Sbjct: 12 KMEEVIDEVKDDFDQIRTGRAKPSLIEGITADYYGTKTPINQMAKVSAPEPRQLVIQPWD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 ++ +E+ I +S+L L+P +G+V+RI +P+ TEE+R V +A+ AE+ +I +RN+ Sbjct: 72 DGVLEDIEKAIMKSDLDLSPNNDGEVIRINIPKLTEEKRKEYVSLANDKAEEHRIEIRNL 131 Query: 133 RRDGMDHLKKSRKSGKASEDMV-ASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RR+ D L++ +G+ SED LEN IQ +TD I +D ++K++ I+ Sbjct: 132 RREANDELEELETAGEISEDNYHRGLEN-IQDLTDEYIAKVDELLDKKEEAIL 183 >gi|295106079|emb|CBL03622.1| ribosome recycling factor [Gordonibacter pamelaeae 7-10-1-b] Length = 180 Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 63/176 (35%), Positives = 104/176 (59%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 ++RM ++ L + ++RTGR S +LD +KV+ YG P+NQ+A + + MLV+ Sbjct: 5 EERMERALASLGEAFGSVRTGRASALLLDRIKVDYYGVPTPVNQMAGIKTPDAHMLVIEP 64 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 WDK ++ ++E I ES+LG+ P +G +R+P P TEERR LVK YAE+++++VR Sbjct: 65 WDKGVLGAIEHAIMESDLGVTPSNDGSCIRLPFPSLTEERRRELVKQCKNYAEEARVAVR 124 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 R+D L + K ED + ++QK+TD + +D F++K+ E+M Sbjct: 125 KARQDANAALDRCVKDDNLPEDDERRAQAEVQKLTDKYVAQVDEAFKKKEAEVMEI 180 >gi|148926382|ref|ZP_01810066.1| ribosome recycling factor [Campylobacter jejuni subsp. jejuni CG8486] gi|145844774|gb|EDK21879.1| ribosome recycling factor [Campylobacter jejuni subsp. jejuni CG8486] Length = 183 Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 66/178 (37%), Positives = 107/178 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L N K + ++ LKKD TLRTG+V+ +LD + V+ YG+ PLNQVA V + + Sbjct: 4 LTNKKPKSEKSLEALKKDFTTLRTGKVNTHILDHITVDYYGTQTPLNQVATVLASDASTI 63 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ W+K ++ ++E I +N+G+NP +G+ +++ P T E+R VK A A EK+K Sbjct: 64 SITPWEKPLLKTIESAIAAANIGVNPNNDGESVKLFFPPMTREQREENVKQAKAMGEKAK 123 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +S+RNIR+D D +KK K SED +++QK+TD+ ID + K+ E++ Sbjct: 124 VSIRNIRKDANDAVKKLEKDKAISEDEAKKAYDEVQKLTDTYTTKIDESVKSKESELL 181 >gi|313813385|gb|EFS51099.1| ribosome recycling factor [Propionibacterium acnes HL025PA1] gi|327334225|gb|EGE75939.1| ribosome recycling factor [Propionibacterium acnes HL097PA1] Length = 184 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 62/180 (34%), Positives = 110/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +++ + +MG + +++ +RTGR +P+M + + VE Y + PL Q+A+ V E R + Sbjct: 5 IKDAEKKMGSAVDHAREEFAAIRTGRANPAMFNKLMVEYYDTPTPLQQLASFQVPEARTV 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK V VE+ I +S+LG+NP +G V+R +P TEERR +K+A AE+ + Sbjct: 65 LIAPFDKSCVNDVEKAIRDSDLGVNPSNDGNVVRCVLPALTEERRKEYIKMAKTKAEEGR 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I+VRN+RR D +KK K + SED + LE ++ ++T ++ ID + K+ E++ Sbjct: 125 IAVRNVRRASNDVVKKQEKDKEISEDEMTRLEKELDQVTRKYVEQIDELLKSKESELLEI 184 >gi|116669931|ref|YP_830864.1| ribosome recycling factor [Arthrobacter sp. FB24] gi|172044060|sp|A0JUP4|RRF_ARTS2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|116610040|gb|ABK02764.1| ribosome recycling factor [Arthrobacter sp. FB24] Length = 185 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 63/174 (36%), Positives = 104/174 (59%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 D+M + K+D ++RTGR +P + + V V+ YGS PL Q+A+ V + R ++++ + Sbjct: 11 DKMDKAVEVAKEDFASIRTGRATPGLYNRVLVDYYGSPTPLQQLASFAVPDARTILITPF 70 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 DK + +ER + +S +G NP +G V+RI +PE T+ERR VK+ A E +K+S+RN Sbjct: 71 DKTALRDIERALSDSEVGANPSNDGNVIRITIPELTKERRKEYVKIVKAKGEDAKVSIRN 130 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 IRR + L K K G+A ED A E ++ +T + + ID + K+ E++ Sbjct: 131 IRRKAKETLDKLVKDGEAGEDEGARGEKELDALTKAHVDGIDDLLKRKEAELLE 184 >gi|256371432|ref|YP_003109256.1| ribosome recycling factor [Acidimicrobium ferrooxidans DSM 10331] gi|256008016|gb|ACU53583.1| ribosome recycling factor [Acidimicrobium ferrooxidans DSM 10331] Length = 190 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 60/179 (33%), Positives = 108/179 (60%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 +L +DRM + +++ T+RTGR ++LD + VE YG VPL Q+A+VT +P Sbjct: 10 ELAAFEDRMAKAVRHTEEEFATVRTGRAQAALLDGIVVEYYGERVPLRQLASVTTPDPHS 69 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 L+++ +D+ + ++ER I +S+LG+NP +G V+RI + TEERR LVKV AE+ Sbjct: 70 LLIAPYDRNAMGAMERAIRDSDLGVNPTNDGSVIRIAIAPLTEERRRELVKVVRKRAEEG 129 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++++R +RR H + ++ G + D +A +E + ++T + +D E K+ +++ Sbjct: 130 RVAIRGVRRQAKQHFESLQRQGSLTTDDLADIERSLDRLTARFVGELDRALEVKEHDLL 188 >gi|147669001|ref|YP_001213819.1| ribosome recycling factor [Dehalococcoides sp. BAV1] gi|146269949|gb|ABQ16941.1| ribosome recycling factor [Dehalococcoides sp. BAV1] Length = 173 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 58/170 (34%), Positives = 110/170 (64%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M ++ L +++ +RTGR SP++++ ++VE G P+N +AN++ +PR + + WD+ Sbjct: 1 MSASLDVLLQELSGIRTGRSSPALVEHIRVEYAGVPTPINHLANISAPDPRYITIQPWDR 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 ++++E+ I +S+LGL P +G ++R+ +P +EERR ++K+ + E+ KI++RN+R Sbjct: 61 SCLSAIEKAIMKSDLGLMPNNDGNIIRLNIPPLSEERRQEMIKIVNKRLEEDKIAMRNVR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 RD MD +KK K+ + S+D + + +QKITD+ I D +K+ E+ Sbjct: 121 RDAMDEMKKLEKAKEISQDDLKRGSDQLQKITDNFIAKADKLGADKEAEL 170 >gi|239928669|ref|ZP_04685622.1| ribosome recycling factor [Streptomyces ghanaensis ATCC 14672] Length = 186 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 62/179 (34%), Positives = 105/179 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K+D +RTGR P+M + + + YG+ P+NQ+A+ +V EPRM Sbjct: 7 LLEAEEKMEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMA 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV+ +DK + ++E+ I +S+LG+NP +G ++R+ PE TEERR +KVA A E +K Sbjct: 67 VVTPFDKSALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEERRREFIKVAKAKGEDAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +S+R +RR D + K K G+ ED E ++ T + +D + K+ E++ Sbjct: 127 VSIRAVRRKAKDAIDKLIKDGEVGEDEGRRAEKELDDTTAKYVAQVDELLKHKEAELLE 185 >gi|328885353|emb|CCA58592.1| Ribosome recycling factor [Streptomyces venezuelae ATCC 10712] Length = 186 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 63/179 (35%), Positives = 106/179 (59%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K+D +RTGR P+M + + + YG+ P+NQ+A+ +V EPRM Sbjct: 7 LLEAEEKMEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGAITPINQLASFSVPEPRMA 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV+ +DK + ++E+ I +S+LG+NP +G ++R+ PE TEERR +KVA AE SK Sbjct: 67 VVTPFDKSALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEERRREYIKVAKGKAEDSK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 IS+R++RR + + K K G+ ED E ++ T + +D + K+ E++ Sbjct: 127 ISIRSVRRKAKETIDKFVKDGEVGEDEGRRAEKELDDTTAKYVAQVDELLKHKEAELLE 185 >gi|291436992|ref|ZP_06576382.1| ribosome recycling factor [Streptomyces ghanaensis ATCC 14672] gi|291339887|gb|EFE66843.1| ribosome recycling factor [Streptomyces ghanaensis ATCC 14672] Length = 185 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 62/179 (34%), Positives = 105/179 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K+D +RTGR P+M + + + YG+ P+NQ+A+ +V EPRM Sbjct: 6 LLEAEEKMEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMA 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV+ +DK + ++E+ I +S+LG+NP +G ++R+ PE TEERR +KVA A E +K Sbjct: 66 VVTPFDKSALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEERRREFIKVAKAKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +S+R +RR D + K K G+ ED E ++ T + +D + K+ E++ Sbjct: 126 VSIRAVRRKAKDAIDKLIKDGEVGEDEGRRAEKELDDTTAKYVAQVDELLKHKEAELLE 184 >gi|87123906|ref|ZP_01079756.1| ribosome recycling factor protein Rrf [Synechococcus sp. RS9917] gi|86168475|gb|EAQ69732.1| ribosome recycling factor protein Rrf [Synechococcus sp. RS9917] Length = 182 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 62/158 (39%), Positives = 100/158 (63%) Query: 27 TLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHES 86 T+RTGR + S+LD + VE YG+ PL +A ++ + + + + +D +A++E+ I S Sbjct: 23 TIRTGRANSSLLDRISVEYYGADTPLKSLATLSTPDSQTIQIQPFDLSALAAIEKAIAMS 82 Query: 87 NLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKS 146 LG P +G+V+RI VP TEERR K+A YAE+ K+++RNIRRD +D +KK K Sbjct: 83 ELGFTPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGKVALRNIRRDAIDKVKKQEKE 142 Query: 147 GKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 G+ SED ++ +QK+TD I I++ +K+ +I+ Sbjct: 143 GEISEDQSRDEQDKVQKLTDRFIAAIETHLADKEADIL 180 >gi|145343357|ref|XP_001416314.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144576539|gb|ABO94607.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 176 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 60/172 (34%), Positives = 104/172 (60%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 +RM T+ + D T+RTGR + ++LD ++V+ YG+ PL +AN + + + + + + Sbjct: 2 ERMEKTMDAIANDFSTVRTGRANAAVLDRIEVDYYGAPTPLKTIANASTPDAQTITIQPF 61 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 DK + +ER I+ES+LG+NP +G ++R+ VP T ERR L K+ E K+++RN Sbjct: 62 DKSAIKDIERAINESDLGMNPSNDGNIIRLNVPPLTAERRKELAKLVSKLGEDGKVALRN 121 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +RRD M +K K+G ED +A L+ ++ +T S +K +D + K+ E+ Sbjct: 122 VRRDAMKAYEKLEKAGSFGEDEIAKLKKSMEDLTASYVKKVDELTKAKETEL 173 >gi|116491008|ref|YP_810552.1| ribosome recycling factor [Oenococcus oeni PSU-1] gi|118586854|ref|ZP_01544288.1| ribosome recycling factor [Oenococcus oeni ATCC BAA-1163] gi|122276810|sp|Q04F85|RRF_OENOB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|116091733|gb|ABJ56887.1| ribosome recycling factor [Oenococcus oeni PSU-1] gi|118432686|gb|EAV39418.1| ribosome recycling factor [Oenococcus oeni ATCC BAA-1163] Length = 180 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 74/183 (40%), Positives = 117/183 (63%), Gaps = 3/183 (1%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +IDL+ +K+RMG + +++ +R GR +P++L+ ++VE YG+ PLNQ+A+V + E Sbjct: 1 MIDLKEVKERMGKVSKAFQNELINIRAGRANPNILNKIQVEYYGAPTPLNQLASVQIPEA 60 Query: 64 RMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAE 123 R+L+++ +DK + ++E+ I S+LGL P +G +R+ +P+ TE+ R LVK A AE Sbjct: 61 RVLLITPYDKTSLKAIEQAIFASDLGLTPQNDGSAIRLIIPQLTEDSRKELVKQVKAEAE 120 Query: 124 KSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 K+K++ RN R D M LK K SED E+DIQK TD IK+ID + K+KE+ Sbjct: 121 KAKVAARNTRHDFMSDLK---KDNDLSEDSRHRTEDDIQKATDLEIKDIDRIADIKEKEL 177 Query: 184 MHF 186 M Sbjct: 178 MEI 180 >gi|290890488|ref|ZP_06553563.1| hypothetical protein AWRIB429_0953 [Oenococcus oeni AWRIB429] gi|290479884|gb|EFD88533.1| hypothetical protein AWRIB429_0953 [Oenococcus oeni AWRIB429] Length = 180 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 74/183 (40%), Positives = 117/183 (63%), Gaps = 3/183 (1%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +IDL+ +K+RMG + +++ +R GR +P++L+ ++VE YG+ PLNQ+A+V + E Sbjct: 1 MIDLKEVKERMGKVSKAFQNELINIRAGRANPNILNKIQVEYYGTPTPLNQLASVQIPEA 60 Query: 64 RMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAE 123 R+L+++ +DK + ++E+ I S+LGL P +G +R+ +P+ TE+ R LVK A AE Sbjct: 61 RVLLITPYDKTSLKAIEQAIFASDLGLTPQNDGSAIRLIIPQLTEDSRKELVKQVKAEAE 120 Query: 124 KSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 K+K++ RN R D M LK K SED E+DIQK TD IK+ID + K+KE+ Sbjct: 121 KAKVAARNTRHDFMSDLK---KDNDLSEDSRHRTEDDIQKATDLEIKDIDRIADIKEKEL 177 Query: 184 MHF 186 M Sbjct: 178 MEI 180 >gi|154149092|ref|YP_001405963.1| ribosome recycling factor [Campylobacter hominis ATCC BAA-381] gi|166230774|sp|A7I0C2|RRF_CAMHC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|153805101|gb|ABS52108.1| ribosome recycling factor [Campylobacter hominis ATCC BAA-381] Length = 185 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 69/184 (37%), Positives = 109/184 (59%), Gaps = 2/184 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N V D Q K ++ LK+D TLRTG+VS +L+ + V+ Y + PLNQVA V Sbjct: 2 LNSVYDAQ--KSDCNKALNALKRDFSTLRTGKVSVKILENIFVDYYDNQTPLNQVATVLA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + + V+ W+K M+ +E I +N+G+NP +G+ +++ P T E+R K A A Sbjct: 60 TDATTISVTPWEKSMLKGIESAIAAANIGVNPTNDGESVKLFFPPMTTEQRKENAKKAKA 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 EK+K+S+RNIR+D D +KK K SED +++QKITD+ I+ ID + K+ Sbjct: 120 MGEKAKVSIRNIRKDANDGVKKLEKDKSISEDEAKKAYDEVQKITDNFIEKIDEAVKNKE 179 Query: 181 KEIM 184 +E++ Sbjct: 180 EELL 183 >gi|58337544|ref|YP_194129.1| ribosome recycling factor Rrf [Lactobacillus acidophilus NCFM] gi|58254861|gb|AAV43098.1| ribosome recycling factor Rrf [Lactobacillus acidophilus NCFM] Length = 164 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 59/146 (40%), Positives = 99/146 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +D MG +I +K + ++R G + ++LD V+VE YG+ PL Q+++VT+ EPR+L Sbjct: 6 IKKAQDNMGKSIKVYQKKLASVRAGVANAALLDNVQVEYYGAPTPLTQMSSVTIPEPRVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +D+ + +E + SNLGL P +G+V+R+ +P+ T ERR + K YAE++K Sbjct: 66 LITPYDQNSLDDIEHALLASNLGLTPANDGKVIRLVIPQLTSERREEIAKEVGKYAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASED 152 I+VRN+RR+ MD LKK K+G +ED Sbjct: 126 IAVRNVRREAMDSLKKEEKNGDITED 151 >gi|282898680|ref|ZP_06306668.1| Ribosome recycling factor [Cylindrospermopsis raciborskii CS-505] gi|281196548|gb|EFA71457.1| Ribosome recycling factor [Cylindrospermopsis raciborskii CS-505] Length = 182 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 63/170 (37%), Positives = 104/170 (61%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M T+ ++ ++RTGR + S+LD V+V+ YGS L +AN+T + +++ +D+ Sbjct: 10 MNKTVEATQRAFNSIRTGRANASLLDKVQVDYYGSPTSLKSLANITTPDATTILIQPYDR 69 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 + VE+ I S++GL P +G V+R+ +P T +RR LVK+A YAE+ ++ +RNIR Sbjct: 70 TSLNIVEKAISLSDVGLTPSNDGSVIRLNIPPLTSDRRKELVKLAAKYAEEGRVGIRNIR 129 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 RD +D ++K K+G+ SED ++ +QKIT ID EK+K+I Sbjct: 130 RDALDSIRKQEKAGEVSEDESRDQQDKLQKITSKYTAKIDELLAEKEKDI 179 >gi|257784511|ref|YP_003179728.1| ribosome recycling factor [Atopobium parvulum DSM 20469] gi|257473018|gb|ACV51137.1| ribosome recycling factor [Atopobium parvulum DSM 20469] Length = 181 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 68/176 (38%), Positives = 102/176 (57%), Gaps = 3/176 (1%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K M I LK + +RTGR +P LD +KV+ YG P++Q+A + V E ML+V Sbjct: 9 KQSMEKCIEALKNNFGRVRTGRANPHALDHIKVDYYGQPTPISQLAAIKVPEASMLLVEP 68 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 WDK + S+E+ I S+LG+ P +G +R+P P TEERR L K AE++++++R Sbjct: 69 WDKTALKSIEKAIESSDLGITPSNDGSAIRLPFPMPTEERRRELAKECSQIAEEARVAIR 128 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 N+RRD +++ + SED +N IQK+TD+ I I+S + K EIM Sbjct: 129 NVRRDINGKIERDE---ELSEDDQKREKNGIQKLTDTYIAQIESLLKTKTSEIMEI 181 >gi|189463438|ref|ZP_03012223.1| hypothetical protein BACCOP_04157 [Bacteroides coprocola DSM 17136] gi|189429867|gb|EDU98851.1| hypothetical protein BACCOP_04157 [Bacteroides coprocola DSM 17136] Length = 186 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 71/178 (39%), Positives = 102/178 (57%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M I +L+ + +R G+ +LD ++V++YGS VP+N VA VT + R + Sbjct: 8 LSGAEEKMDMAIMYLEDALAHIRAGKADVRLLDGIRVDSYGSMVPINNVAAVTTPDARSI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK M +E+ I +S LG+ P G+++RI +P TEERR L K E +K Sbjct: 68 AIKPWDKSMFRVIEKAIIDSELGIMPENNGEIIRIGIPPLTEERRKQLAKQCKGEGETAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +SVRN RRD +D LKK+ K G ED + E +QK D IK ID K KEIM Sbjct: 128 VSVRNARRDAIDALKKAVKDG-MPEDEQKNSEAKLQKSHDKYIKQIDDMLAAKDKEIM 184 >gi|290957080|ref|YP_003488262.1| ribosome recycling factor [Streptomyces scabiei 87.22] gi|260646606|emb|CBG69703.1| ribosome recycling factor [Streptomyces scabiei 87.22] Length = 186 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 63/179 (35%), Positives = 105/179 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K D +RTGR P+M + + + YG+ P+NQ+A+ +V EPRM Sbjct: 7 LLEAEEKMEKAVVVAKDDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMA 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV+ +DK + ++E+ I +S+LG+NP +G ++R+ PE TEERR +KVA + AE SK Sbjct: 67 VVTPFDKTALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEERRRDYIKVARSKAEDSK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +S+R +RR D + K K G+ ED E ++ T + +D + K+ E++ Sbjct: 127 VSIRAVRRKAKDAIDKLVKDGEVGEDEGRRAEKELDDTTAKYVAQVDELLKHKEAELLE 185 >gi|119487064|ref|ZP_01620936.1| ribosome releasing factor [Lyngbya sp. PCC 8106] gi|119455993|gb|EAW37127.1| ribosome releasing factor [Lyngbya sp. PCC 8106] Length = 182 Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 65/177 (36%), Positives = 104/177 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++ M + ++ T+RTGR + S+LD V VE YG+ L +A + + + Sbjct: 3 LAEVESLMQKAVESTQRSFNTIRTGRANTSLLDRVMVEYYGTPTSLKSLATINTPDSSTI 62 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D++ + +E+ I S++GL P +G ++R+ +P T ERR VK+A YAE+ K Sbjct: 63 MIQPFDRKTLDIIEKAISLSDVGLTPNNDGSIIRLNIPPLTSERRQEFVKLASKYAEEGK 122 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +SVRN+RRD +D ++K KS SED L++ IQK+TD ID FE K K+I Sbjct: 123 VSVRNVRRDAVDSVRKQEKSKDLSEDEARDLQDQIQKLTDKYTAKIDEMFEAKDKDI 179 >gi|115472897|ref|NP_001060047.1| Os07g0570700 [Oryza sativa Japonica Group] gi|158513666|sp|A2YMU2|RRFC_ORYSI RecName: Full=Ribosome-recycling factor, chloroplastic; Short=RRF; AltName: Full=Protein OsL8; AltName: Full=Ribosome-releasing factor, chloroplastic; Flags: Precursor gi|158513703|sp|A3BLC3|RRFC_ORYSJ RecName: Full=Ribosome-recycling factor, chloroplastic; Short=RRF; AltName: Full=Protein OsL8; AltName: Full=Ribosome-releasing factor, chloroplastic; Flags: Precursor gi|34394208|dbj|BAC84660.1| putative Ribosome recycling factor, chloroplast precursor [Oryza sativa Japonica Group] gi|113611583|dbj|BAF21961.1| Os07g0570700 [Oryza sativa Japonica Group] gi|218199871|gb|EEC82298.1| hypothetical protein OsI_26546 [Oryza sativa Indica Group] gi|222637311|gb|EEE67443.1| hypothetical protein OsJ_24808 [Oryza sativa Japonica Group] Length = 266 Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 65/176 (36%), Positives = 107/176 (60%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 ++RM I ++ + T+RTGR +P+MLD ++VE YG+ V L +A + + L++ Sbjct: 91 RERMEKAIETVQNNFNTVRTGRANPAMLDRIEVEYYGTPVNLKSIAQINTPDATSLLIQP 150 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +DK + +E+ I +NLG+ P +G+V+R+ VP T +RR L K AE+ K+++R Sbjct: 151 YDKSSLKLIEKTIVAANLGVTPSNDGEVIRVTVPPLTSDRRKELAKTVAKLAEEGKVAIR 210 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 NIRRD + K K K SED V L D+QK+TD +K I++ ++K++E+M Sbjct: 211 NIRRDAIKAYDKLEKEKKLSEDNVKDLSADLQKVTDEYMKKIEAIQKQKEQELMKI 266 >gi|158313016|ref|YP_001505524.1| ribosome recycling factor [Frankia sp. EAN1pec] gi|238686845|sp|A8L6D6|RRF_FRASN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|158108421|gb|ABW10618.1| ribosome recycling factor [Frankia sp. EAN1pec] Length = 185 Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 60/178 (33%), Positives = 109/178 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M +S K D +RTGR++P++ V V+ YG+ P+ Q+A+ + EPRM+ Sbjct: 6 LLEAEEKMDKAVSVAKDDFANIRTGRITPAVFGKVLVDYYGAPTPVQQLASFHIPEPRMV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK + +VE+ + +S+LG+NP +G ++R PE +E+RR LVKVA AE+++ Sbjct: 66 IITPYDKSSLGAVEKAVRDSDLGVNPSNDGTIIRCVFPELSEQRRRDLVKVARTKAEEAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +S+RNIRR D + + + G+A ED E D+ + T + +D K+ +++ Sbjct: 126 VSIRNIRRHAKDAIDRIVRDGEAGEDEGRRGEKDLDEATHRYVSQVDELLRIKESDLL 183 >gi|317508973|ref|ZP_07966606.1| ribosome recycling protein [Segniliparus rugosus ATCC BAA-974] gi|316252738|gb|EFV12175.1| ribosome recycling protein [Segniliparus rugosus ATCC BAA-974] Length = 185 Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 62/175 (35%), Positives = 105/175 (60%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 ++RM + K + +RTGR + S+ V V+ YG+ P+ QV++V +PR++V+ Sbjct: 10 EERMELAVEVAKDEFAAIRTGRATASLFAKVVVDYYGTPTPIPQVSSVQTPDPRLVVIKP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 ++ + ++E I +S+LGLNP +GQV+R+ +P TEERR K A AE+++++VR Sbjct: 70 YEASQLRAIEEAIQKSDLGLNPSNDGQVVRVAIPALTEERRKEFAKQARGKAEEARVTVR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 N+RR D L K K G+A ED V E ++ K+T + ID ++K+ E++ Sbjct: 130 NVRRKANDQLGKLAKEGQAGEDDVVRAEKELDKLTAKFVGTIDELVKKKEAELLE 184 >gi|88807685|ref|ZP_01123197.1| ribosome releasing factor [Synechococcus sp. WH 7805] gi|88788899|gb|EAR20054.1| ribosome releasing factor [Synechococcus sp. WH 7805] Length = 182 Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 62/176 (35%), Positives = 107/176 (60%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 +++ M ++ +++ T+RTGR + S+LD + VE YG+ PL +A ++ + + + + Sbjct: 5 DLESSMRKSVEATQRNFNTIRTGRANSSLLDRISVEYYGADTPLKSLATLSTPDSQTIQI 64 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 +D +AS+E+ I S LG P +G+V+RI VP TEERR K+A YAE+ K++ Sbjct: 65 QPFDISALASIEKAIAMSELGFTPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGKVA 124 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +RN+RRD +D +KK K G SED +++IQK+T+ I ++ K+ +I+ Sbjct: 125 LRNLRRDAIDKIKKQEKDGDLSEDQSRDQQDEIQKLTNQFIAELEKHLATKEADIL 180 >gi|166365795|ref|YP_001658068.1| ribosome recycling factor [Microcystis aeruginosa NIES-843] gi|189044061|sp|B0JKT7|RRF_MICAN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166088168|dbj|BAG02876.1| ribosome releasing factor [Microcystis aeruginosa NIES-843] Length = 182 Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 63/178 (35%), Positives = 107/178 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++D+M T+ ++ T+RTGR + S+LD + VE YG PL +A ++ + + Sbjct: 3 LAEVQDQMQKTVESTQRAFNTIRTGRANASLLDRIVVEYYGMETPLKSLATISTPDATTI 62 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + +D+ + ++E+ I S++GL P +GQ +R+ +P T +RR LVK+A AE+ K Sbjct: 63 AIQPFDRTSMGAIEKAISLSDVGLTPSNDGQTIRLNIPPLTSDRRKELVKLAAKLAEEGK 122 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++RNIRRD +D ++K K + SED L++ +QK TD I I+ K+K+IM Sbjct: 123 VAIRNIRRDAIDAIRKREKGHEISEDESRDLQDQVQKSTDKFIAKIEDLLTTKEKDIM 180 >gi|315123821|ref|YP_004065825.1| ribosome releasing factor [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315017543|gb|ADT65636.1| ribosome releasing factor [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 185 Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 66/184 (35%), Positives = 111/184 (60%), Gaps = 2/184 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ + Q K + ++ LKKD TLRTG+V+ +LD + V+ YG+ PLNQVA V Sbjct: 2 LNEIFNKQ--KTQSEKSLEALKKDFTTLRTGKVNTHILDHITVDYYGTQTPLNQVATVLA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + + ++ W+K ++ ++E I +N+G+NP +G+ +++ P T E+R VK A A Sbjct: 60 SDASTISITPWEKPLLKTIESAIAATNIGVNPNNDGESVKLFFPPMTREQREENVKQAKA 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 EK+K+S+RNIR+D D +KK K SED +++QK+TD+ ID + K+ Sbjct: 120 MGEKAKVSIRNIRKDANDAVKKLEKDKAISEDEAKKAYDEVQKLTDTYTTKIDESVKNKE 179 Query: 181 KEIM 184 E++ Sbjct: 180 SELL 183 >gi|302762955|ref|XP_002964899.1| hypothetical protein SELMODRAFT_83448 [Selaginella moellendorffii] gi|302809577|ref|XP_002986481.1| hypothetical protein SELMODRAFT_124362 [Selaginella moellendorffii] gi|300145664|gb|EFJ12338.1| hypothetical protein SELMODRAFT_124362 [Selaginella moellendorffii] gi|300167132|gb|EFJ33737.1| hypothetical protein SELMODRAFT_83448 [Selaginella moellendorffii] Length = 192 Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 62/170 (36%), Positives = 109/170 (64%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 +RM TI +K + T+RTGR SP++LD V+VE YG+ V L +A ++ + ++V + Sbjct: 22 ERMEKTIETVKSNFNTIRTGRASPALLDRVEVEYYGTLVLLKTIAQISTPDGSTILVQPF 81 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 D+ ++++++ I +S+LGL P +G V+R+ +P+ T ERR L+K+ E+ K+++RN Sbjct: 82 DRSSLSAIDKAITKSDLGLTPSNDGIVIRLNIPQLTAERRKELLKLVAKLTEEGKVALRN 141 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 +RRD + +K K K S D V L ++Q++TD +K +D F++K+K Sbjct: 142 VRRDAIKSYEKLEKEKKISTDNVKDLSTEMQRLTDEYVKTVDDLFKQKEK 191 >gi|226497262|ref|NP_001150478.1| ribosome recycling factor [Zea mays] gi|195639534|gb|ACG39235.1| ribosome recycling factor [Zea mays] Length = 264 Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 66/176 (37%), Positives = 107/176 (60%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K++M I ++ + T+RTGR +P+MLD ++VE YG+ V L +A ++ + L++ Sbjct: 89 KEKMEKAIETVQANFNTVRTGRANPAMLDRIEVEYYGTPVNLKSIAQISTPDATSLLIQP 148 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +DK + +E+ I +NLG+ P +G+V+R+ VP T +RR L K AE K+++R Sbjct: 149 YDKSSLKLIEKTIVAANLGVTPSNDGEVIRVTVPPLTSDRRKELSKTVAKLAEDGKVAIR 208 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 NIRRD + K K K SED V L D+QK+TD +K I+S ++K++E+M Sbjct: 209 NIRRDAIKAYDKLEKEKKLSEDNVKDLSADLQKVTDEYMKKIESIQKQKEQELMKI 264 >gi|291448100|ref|ZP_06587490.1| ribosome recycling factor [Streptomyces roseosporus NRRL 15998] gi|291351047|gb|EFE77951.1| ribosome recycling factor [Streptomyces roseosporus NRRL 15998] Length = 185 Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 62/173 (35%), Positives = 105/173 (60%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M + K+D +RTGR P+M + + + YG+ P+NQ+A+ +V EPRM VV+ +D Sbjct: 12 KMEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMAVVTPFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K + ++E+ I +S+LG+NP +G ++R+ PE T++RR +KVA AE SKIS+R+I Sbjct: 72 KTALRNIEQAIRDSDLGVNPSNDGNIIRVTFPELTQDRRKEYIKVAKTKAEDSKISIRSI 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 RR ++L K K ++ ED V E ++ T + +D + K+ E++ Sbjct: 132 RRKAKENLDKLVKDKESGEDEVRRAEKELDDTTAKYVAQVDELLKHKEAELLE 184 >gi|283769070|ref|ZP_06341976.1| ribosome recycling factor [Bulleidia extructa W1219] gi|283104427|gb|EFC05804.1| ribosome recycling factor [Bulleidia extructa W1219] Length = 182 Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 65/172 (37%), Positives = 107/172 (62%), Gaps = 3/172 (1%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M + L+ ++ T+RTG + ++D V+ + YG+ PLNQ+A ++V E R +V+ +D Sbjct: 12 KMDKVMDHLQSELNTVRTGMANAKLMDRVEADYYGTPTPLNQIAGISVSEGRTIVIKPYD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + +ER +E+NLG+ P +G V+R+ VP+ T E R + K AE+SKI +RNI Sbjct: 72 PSSLKEIERACNEANLGMAPQNDGTVIRLTVPQLTGETRKEMSKKVGQIAEESKIQIRNI 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD M+ +KK + + EDM +EN+IQK+TD +K ID + K+ E++ Sbjct: 132 RRDAMNVVKKDK---EMDEDMQKDMENEIQKLTDKYVKKIDEQAKAKEAEVL 180 >gi|17228703|ref|NP_485251.1| ribosome recycling factor [Nostoc sp. PCC 7120] gi|22001942|sp|Q8YXK4|RRF_ANASP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|17130555|dbj|BAB73165.1| ribosome recycling factor [Nostoc sp. PCC 7120] Length = 182 Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 64/177 (36%), Positives = 108/177 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +M T+ ++ T+RTGR + S+LD V V+ YGS PL +AN++ + + Sbjct: 3 LAEAESKMQHTVEATQRAFNTIRTGRANASLLDKVLVDYYGSPTPLKSLANISTPDATTI 62 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +DK + VE+ I S++GL P +G V+R+ +P T +RR LVK+A YAE+ + Sbjct: 63 LIQPYDKSSLNIVEKAISLSDVGLTPSNDGAVIRLNIPPLTSDRRKELVKIAAKYAEEGR 122 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +++RNIRRD +D ++K K+ + SED ++ +QK+T+ ID EK+K+I Sbjct: 123 VAIRNIRRDAVDSIRKLEKNAEVSEDEAKDQQDKLQKLTNKYTARIDELLVEKEKDI 179 >gi|288922418|ref|ZP_06416606.1| ribosome recycling factor [Frankia sp. EUN1f] gi|288346221|gb|EFC80562.1| ribosome recycling factor [Frankia sp. EUN1f] Length = 185 Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 60/178 (33%), Positives = 109/178 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M +S K+D +RTGR++P++ V V+ YG+ P+ Q+A+ + EPRM+ Sbjct: 6 LLEAEEKMDKAVSVAKEDFGNIRTGRITPAVFGKVLVDYYGAPTPVQQLASFHIPEPRMV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK + +VE+ + +S+LG+NP +G ++R PE +E+RR LVKVA AE+++ Sbjct: 66 IITPYDKSSLGAVEKAVRDSDLGVNPSNDGAIIRCVFPELSEQRRRELVKVARTKAEEAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +S+RNIRR D + + + G A ED E D+ + T + +D K+ +++ Sbjct: 126 VSIRNIRRHAKDAIDRIVRDGDAGEDEGRRGEKDLDEATHRYVAQVDELLRIKESDLL 183 >gi|320008276|gb|ADW03126.1| ribosome recycling factor [Streptomyces flavogriseus ATCC 33331] Length = 185 Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 62/173 (35%), Positives = 104/173 (60%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M + K+D +RTGR P+M + + + YG+ P+NQ+A+ +V EPRM VV+ +D Sbjct: 12 KMEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMAVVTPFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K + ++E+ I +S+LG+NP +G ++R+ PE T++RR +KVA AE SKIS+R+I Sbjct: 72 KTALRNIEQAIRDSDLGVNPSNDGNIIRVTFPELTQDRRKEFIKVAKTKAEDSKISIRSI 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 RR + L K K ++ ED V E ++ T + +D + K+ E++ Sbjct: 132 RRKAKESLDKLVKDKESGEDEVRRAEKELDDTTAKYVAQVDELLKHKEAELLE 184 >gi|225011201|ref|ZP_03701661.1| ribosome recycling factor [Flavobacteria bacterium MS024-3C] gi|225004662|gb|EEG42624.1| ribosome recycling factor [Flavobacteria bacterium MS024-3C] Length = 184 Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 75/186 (40%), Positives = 104/186 (55%), Gaps = 6/186 (3%) Query: 1 MNQVID--LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 MN+ +D L + K+ M ++ L+K +R G+ SP ML VKV+ YGS PL+QVANV Sbjct: 1 MNEEVDFILDSAKENMDRAMAHLEKSFAKIRAGKASPIMLSTVKVDYYGSPTPLSQVANV 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 + R + V W+K M+ +E+ I +NLG NP+ G ++ I VP TEERR LVK A Sbjct: 61 NTTDARTISVQPWEKNMLQEIEKAITNANLGFNPMNNGDLIIINVPPLTEERRRDLVKQA 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 A AE +KI VRN R++ K K ED E IQ++T+ K I+ Sbjct: 121 KAEAEDAKIGVRNARQEA----NKDIKGTDLPEDTAKDAEASIQELTNQYSKKIEELLTV 176 Query: 179 KKKEIM 184 K+ EIM Sbjct: 177 KEAEIM 182 >gi|239944636|ref|ZP_04696573.1| ribosome recycling factor [Streptomyces roseosporus NRRL 15998] gi|239991100|ref|ZP_04711764.1| ribosome recycling factor [Streptomyces roseosporus NRRL 11379] Length = 186 Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 62/173 (35%), Positives = 105/173 (60%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M + K+D +RTGR P+M + + + YG+ P+NQ+A+ +V EPRM VV+ +D Sbjct: 13 KMEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMAVVTPFD 72 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K + ++E+ I +S+LG+NP +G ++R+ PE T++RR +KVA AE SKIS+R+I Sbjct: 73 KTALRNIEQAIRDSDLGVNPSNDGNIIRVTFPELTQDRRKEYIKVAKTKAEDSKISIRSI 132 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 RR ++L K K ++ ED V E ++ T + +D + K+ E++ Sbjct: 133 RRKAKENLDKLVKDKESGEDEVRRAEKELDDTTAKYVAQVDELLKHKEAELLE 185 >gi|57237294|ref|YP_178307.1| ribosome recycling factor [Campylobacter jejuni RM1221] gi|86151424|ref|ZP_01069639.1| ribosome recycling factor [Campylobacter jejuni subsp. jejuni 260.94] gi|62900783|sp|Q5HWM8|RRF_CAMJR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|57166098|gb|AAW34877.1| ribosome recycling factor [Campylobacter jejuni RM1221] gi|85841771|gb|EAQ59018.1| ribosome recycling factor [Campylobacter jejuni subsp. jejuni 260.94] gi|315057664|gb|ADT71993.1| Ribosome recycling factor [Campylobacter jejuni subsp. jejuni S3] Length = 185 Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 66/184 (35%), Positives = 111/184 (60%), Gaps = 2/184 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ + Q K + ++ LKKD TLRTG+V+ +LD + V+ YG+ PLNQVA V Sbjct: 2 LNEIFNKQ--KTQSEKSLEALKKDFTTLRTGKVNTHILDHITVDYYGTQTPLNQVATVLA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + + ++ W+K ++ ++E I +N+G+NP +G+ +++ P T E+R VK A A Sbjct: 60 SDASTISITPWEKPLLKTIESAIAAANIGVNPNNDGESVKLFFPPMTREQREENVKQAKA 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 EK+K+S+RNIR+D D +KK K SED +++QK+TD+ ID + K+ Sbjct: 120 MGEKAKVSIRNIRKDANDAVKKLEKDKAISEDEAKKAYDEVQKLTDTYTTKIDESVKNKE 179 Query: 181 KEIM 184 E++ Sbjct: 180 SELL 183 >gi|297821238|ref|XP_002878502.1| hypothetical protein ARALYDRAFT_907901 [Arabidopsis lyrata subsp. lyrata] gi|297324340|gb|EFH54761.1| hypothetical protein ARALYDRAFT_907901 [Arabidopsis lyrata subsp. lyrata] Length = 275 Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 66/177 (37%), Positives = 109/177 (61%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 ++K +M TI L+ ++RTGR + +MLD ++VE YGS V L +A ++ + L++ Sbjct: 98 DVKSKMEKTIETLRTSFNSIRTGRSNAAMLDKIEVEYYGSPVSLKSIAQISTPDGSSLLL 157 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 +DK + ++E+ I S+LG+ P +G V+R+ +P T ERR L KV +E+ K++ Sbjct: 158 QPYDKSSLKAIEKAIVNSDLGVTPNNDGDVIRLSLPPLTSERRKELSKVVAKQSEEGKVA 217 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +RNIRRD + K K K SED V L +D+QK+ D +K I+ +++K+KE+M Sbjct: 218 LRNIRRDALKSYDKLEKEKKLSEDNVKDLSSDLQKLIDVYMKKIEELYKQKEKELMK 274 >gi|157414532|ref|YP_001481788.1| ribosome recycling factor [Campylobacter jejuni subsp. jejuni 81116] gi|172047024|sp|A8FK24|RRF_CAMJ8 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|157385496|gb|ABV51811.1| ribosome recycling factor [Campylobacter jejuni subsp. jejuni 81116] gi|315932033|gb|EFV10986.1| ribosome recycling factor [Campylobacter jejuni subsp. jejuni 327] Length = 185 Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 66/184 (35%), Positives = 111/184 (60%), Gaps = 2/184 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ + Q K + ++ LKKD TLRTG+V+ +LD + V+ YG+ PLNQVA V Sbjct: 2 LNEIFNKQ--KTQSEKSLEALKKDFTTLRTGKVNTHILDHITVDYYGTQTPLNQVATVLA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + + ++ W+K ++ ++E I +N+G+NP +G+ +++ P T E+R VK A A Sbjct: 60 SDASTISITPWEKPLLKTIESAIAAANIGVNPNNDGESVKLFFPPMTREQREENVKQAKA 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 EK+K+S+RNIR+D D +KK K SED +++QK+TD+ ID + K+ Sbjct: 120 MGEKAKVSIRNIRKDANDAVKKLEKDKAISEDEAKKAYDEVQKLTDTYTTKIDESVKSKE 179 Query: 181 KEIM 184 E++ Sbjct: 180 SELL 183 >gi|257459905|ref|ZP_05625011.1| ribosome recycling factor [Campylobacter gracilis RM3268] gi|257442757|gb|EEV17894.1| ribosome recycling factor [Campylobacter gracilis RM3268] Length = 185 Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 69/171 (40%), Positives = 103/171 (60%), Gaps = 1/171 (0%) Query: 15 GD-TISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 GD I LKKD TLRTG+VS ++LD + V+ YGS PLNQVA V + + ++ W+K Sbjct: 13 GDRAIEALKKDFTTLRTGKVSVAILDHILVDYYGSQTPLNQVATVLSTDAVTISITPWEK 72 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 M+ ++E I +N+G+NP +G+ +++ P T E+R K A A EK+KI +RN+R Sbjct: 73 PMLKAIESAIAAANIGVNPTNDGESVKLFFPPMTVEQRQENAKKAKAMGEKAKIGIRNVR 132 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +D D +KK K SED +++QKITDS ID + K+ E++ Sbjct: 133 KDANDEIKKLEKDKAISEDDAKKGYDEVQKITDSYSAKIDDAVKAKEAELL 183 >gi|224034227|gb|ACN36189.1| unknown [Zea mays] Length = 264 Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 66/176 (37%), Positives = 107/176 (60%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K++M I ++ + T+RTGR +P+MLD ++VE YG+ V L +A ++ + L++ Sbjct: 89 KEKMEKAIETVQANFNTVRTGRANPAMLDRIEVEYYGTPVNLKSIAQISTPDATSLLIQP 148 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +DK + +E+ I +NLG+ P +G+V+R+ VP T +RR L K AE K+++R Sbjct: 149 YDKSSLKLIEKTIVAANLGVTPSNDGEVIRVTVPPLTSDRRKELSKTVAKLAEDGKVAIR 208 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 NIRRD + K K K SED V L D+QK+TD +K I+S ++K++E+M Sbjct: 209 NIRRDAIKAYDKLEKEKKLSEDNVKDLSADLQKVTDEYMKKIESIQKQKEQELMKI 264 >gi|198274241|ref|ZP_03206773.1| hypothetical protein BACPLE_00381 [Bacteroides plebeius DSM 17135] gi|198272916|gb|EDY97185.1| hypothetical protein BACPLE_00381 [Bacteroides plebeius DSM 17135] Length = 186 Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 69/174 (39%), Positives = 102/174 (58%), Gaps = 1/174 (0%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 +++M + +L + + +R G+ +LD ++V++YGS VP+N VA VT + R + + Sbjct: 12 EEKMDMAVMYLDESLAHIRAGKADVRLLDGIRVDSYGSMVPINNVAAVTTPDARSIAIKP 71 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 WDK M +E+ I +S LG+ P G+++RI +P TEERR L K E +K+SVR Sbjct: 72 WDKSMFRVIEKAIIDSELGIMPENNGEIIRIGIPPLTEERRKQLSKQCKGEGETAKVSVR 131 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 N RRD +D LKK+ K G ED + E +QK+ D IK ID K KEIM Sbjct: 132 NARRDAIDALKKAVKDG-MPEDEQKNSEAKLQKVHDKYIKQIDDMLAAKDKEIM 184 >gi|113953351|ref|YP_731208.1| ribosome recycling factor [Synechococcus sp. CC9311] gi|122945600|sp|Q0I8L4|RRF_SYNS3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|113880702|gb|ABI45660.1| ribosome recycling factor [Synechococcus sp. CC9311] Length = 182 Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 61/171 (35%), Positives = 105/171 (61%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M ++ +++ T+RTGR +PS+LD + VE YG+ PL +A+++ + + + V +D Sbjct: 10 MRKSVEATQRNFNTIRTGRANPSLLDRINVEYYGADTPLKSLASLSTPDSQTIAVQPFDM 69 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 +A +E+ I S+LG P +G+++RI VP TEERR K+A Y+E+ K+++R++R Sbjct: 70 GSLALIEKAIATSDLGFTPNNDGKIIRINVPPLTEERRKEFCKLAAKYSEEGKVALRSVR 129 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RD +D +KK K G SED ++ +QK TD I ++ +K+ EI+ Sbjct: 130 RDAIDKIKKQEKEGDLSEDQSRDEQDQVQKTTDRFIAELEKHLADKEVEIL 180 >gi|332877581|ref|ZP_08445325.1| ribosome recycling factor [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684430|gb|EGJ57283.1| ribosome recycling factor [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 184 Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 70/186 (37%), Positives = 108/186 (58%), Gaps = 6/186 (3%) Query: 1 MNQVID--LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 MN+ I+ L + + M + + L K + +R G+ SP ML V V+ YG+ PL+QVANV Sbjct: 1 MNEEINIILDSTSEAMQEALQHLDKALGNIRAGKASPQMLGSVMVDYYGAQTPLSQVANV 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 + R + + W+K+M+ +E+ I +NLG NP+ G+++ I VP TEERR LVK A Sbjct: 61 AAPDSRTITIQPWEKKMIQPIEKAIQIANLGFNPMNNGEMVIISVPPLTEERRKELVKQA 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 E +KISVRN R++ +KK + S+D+ E +QK+TD IK ++ Sbjct: 121 KGEGEDAKISVRNARQEANKEIKKV----ETSDDIKKDAEERVQKLTDKYIKKVEEVLAA 176 Query: 179 KKKEIM 184 K+ EI+ Sbjct: 177 KEAEIL 182 >gi|213962598|ref|ZP_03390860.1| ribosome recycling factor [Capnocytophaga sputigena Capno] gi|213954924|gb|EEB66244.1| ribosome recycling factor [Capnocytophaga sputigena Capno] Length = 184 Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 69/184 (37%), Positives = 108/184 (58%), Gaps = 6/184 (3%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N ++D N + M + + L K + +R G+ SP M+ V V+ YG+ PL+QVANV+ Sbjct: 5 INIILDTTN--EAMQEALQHLDKALGNIRAGKASPQMVSSVMVDYYGAQTPLSQVANVSA 62 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R + + W+K+M+ +E+ I +NLG NP+ G+++ I VP TEERR LVK A Sbjct: 63 PDSRTISIQPWEKKMIQPIEKAIQIANLGFNPMNNGEMVIITVPPLTEERRRELVKQAKG 122 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E +KISVRN R+D +KK + S+D+ E +QK+TD IK ++ K+ Sbjct: 123 EGEDAKISVRNARQDANKEIKKV----ETSDDIKKDAEERVQKLTDKYIKKVEEVLAAKE 178 Query: 181 KEIM 184 EI+ Sbjct: 179 AEIL 182 >gi|330466307|ref|YP_004404050.1| ribosome recycling factor [Verrucosispora maris AB-18-032] gi|328809278|gb|AEB43450.1| ribosome recycling factor [Verrucosispora maris AB-18-032] Length = 185 Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 61/178 (34%), Positives = 108/178 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K++ +RTGR +P+M + ++ YGS PL Q+A+V + EPRM Sbjct: 6 LLEAEEKMERAVEHAKEEFGAIRTGRATPAMFSKIIIDYYGSPTPLTQMASVAIPEPRMA 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D + ++E+ I +S+LG+NP EG LRI +P+ TEERR ++KVA E++K Sbjct: 66 IIKPYDNSQINAMEKAIRDSDLGVNPNNEGNQLRILLPQMTEERRRDMIKVARHKGEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++RNIRR G + L + K G+ ED E ++ +T + ++D + K+ E++ Sbjct: 126 VAIRNIRRKGKEELDRLVKDGEVGEDDGRRAEKELDDLTQRYVAHVDELVKHKETELL 183 >gi|219683778|ref|YP_002470161.1| ribosome recycling factor [Bifidobacterium animalis subsp. lactis AD011] gi|254809492|sp|B8DUA6|RRF_BIFA0 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|219621428|gb|ACL29585.1| ribosome recycling factor [Bifidobacterium animalis subsp. lactis AD011] Length = 184 Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 68/185 (36%), Positives = 110/185 (59%), Gaps = 2/185 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M V+D K++M ++ K++ +RTGR +P++L+ + VE YG+ PL VA + V Sbjct: 1 MANVVD--QSKEQMKKSVESTKENFAGIRTGRANPALLNGIVVEYYGAPTPLKHVATIGV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPR L V+ +D +VE+ + +S+LG +P G + + +PE TE+RR VK+A + Sbjct: 59 PEPRTLSVTPFDPSQANAVEKALRDSDLGASPRRNGSAILLTMPELTEDRRKEYVKLAKS 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE K++VRNIRR + + K+ K G+ ED L ++ K+T +T +D+ E K+ Sbjct: 119 KAEDGKVAVRNIRRKSKEAIDKAVKDGEMGEDEGDRLLKELDKVTKATTDELDALLEAKQ 178 Query: 181 KEIMH 185 KEIM Sbjct: 179 KEIME 183 >gi|205356536|ref|ZP_03223299.1| ribosome recycling factor [Campylobacter jejuni subsp. jejuni CG8421] gi|205345541|gb|EDZ32181.1| ribosome recycling factor [Campylobacter jejuni subsp. jejuni CG8421] Length = 187 Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 66/184 (35%), Positives = 111/184 (60%), Gaps = 2/184 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ + Q K + ++ LKKD TLRTG+V+ +LD + V+ YG+ PLNQVA V Sbjct: 4 LNEIFNKQ--KTQSEKSLEALKKDFTTLRTGKVNTHILDHITVDYYGTQTPLNQVATVLA 61 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + + ++ W+K ++ ++E I +N+G+NP +G+ +++ P T E+R VK A A Sbjct: 62 SDASTISITPWEKPLLKTIESAIAAANIGVNPNNDGESVKLFFPPMTREQREENVKQAKA 121 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 EK+K+S+RNIR+D D +KK K SED +++QK+TD+ ID + K+ Sbjct: 122 MGEKAKVSIRNIRKDANDAVKKLEKDKAISEDEAKKAYDEVQKLTDTYTTKIDESVKSKE 181 Query: 181 KEIM 184 E++ Sbjct: 182 SELL 185 >gi|88658452|ref|YP_507088.1| ribosome recycling factor [Ehrlichia chaffeensis str. Arkansas] gi|123493752|sp|Q2GHJ5|RRF_EHRCR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|88599909|gb|ABD45378.1| ribosome recycling factor [Ehrlichia chaffeensis str. Arkansas] Length = 185 Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 70/180 (38%), Positives = 109/180 (60%), Gaps = 4/180 (2%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ K RM ++S D+ +RTGR S+L+ + VE YG V LN +++V+V + + L+ Sbjct: 7 QDAKSRMEKSLSVYLSDIDGIRTGRARTSVLNGIVVETYGGRVKLNTISSVSVSDNKTLM 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + VWD + +++ I SNLG E +R+ VP+ T++ R LVK+ +E ++ Sbjct: 67 IKVWDSNNIGAIKTAIMNSNLGFGISCEATTIRLTVPDMTQDMRKNLVKLLGKISEDCRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASED--MVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 S+RNIRRD MD LK + S + SED VA +E IQKITD +K ++ F K+KE++H Sbjct: 127 SIRNIRRDIMDRLKVMQDSKEISEDDLRVAGVE--IQKITDDIMKKVNDAFTSKEKELLH 184 >gi|282861391|ref|ZP_06270456.1| ribosome recycling factor [Streptomyces sp. ACTE] gi|282564049|gb|EFB69586.1| ribosome recycling factor [Streptomyces sp. ACTE] Length = 185 Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 104/173 (60%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M + K+D +RTGR P+M + + + YG+ P+NQ+A+ +V EPRM VV+ +D Sbjct: 12 KMEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMAVVTPFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K + ++E+ I +S+LG+NP +G ++R+ PE T++RR +KVA AE SKIS+R++ Sbjct: 72 KSALRNIEQAIRDSDLGVNPSNDGNIIRVTFPELTQDRRKEFIKVAKTKAEDSKISIRSV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 RR + L K K ++ ED V E ++ T + +D + K+ E++ Sbjct: 132 RRKAKESLDKLVKDKESGEDEVRRAEKELDDTTAKYVAQVDELLKHKEAELLE 184 >gi|289178551|gb|ADC85797.1| Ribosome Recycling Factor (RRF) [Bifidobacterium animalis subsp. lactis BB-12] Length = 186 Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 68/185 (36%), Positives = 110/185 (59%), Gaps = 2/185 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M V+D K++M ++ K++ +RTGR +P++L+ + VE YG+ PL VA + V Sbjct: 3 MANVVD--QSKEQMKKSVESTKENFAGIRTGRANPALLNGIVVEYYGAPTPLKHVATIGV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPR L V+ +D +VE+ + +S+LG +P G + + +PE TE+RR VK+A + Sbjct: 61 PEPRTLSVTPFDPSQANAVEKALRDSDLGASPRRNGSAILLTMPELTEDRRKEYVKLAKS 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE K++VRNIRR + + K+ K G+ ED L ++ K+T +T +D+ E K+ Sbjct: 121 KAEDGKVAVRNIRRKSKEAIDKAVKDGEMGEDEGDRLLKELDKVTKATTDELDALLEAKQ 180 Query: 181 KEIMH 185 KEIM Sbjct: 181 KEIME 185 >gi|294631670|ref|ZP_06710230.1| ribosome recycling factor [Streptomyces sp. e14] gi|292835003|gb|EFF93352.1| ribosome recycling factor [Streptomyces sp. e14] Length = 185 Score = 128 bits (321), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 61/179 (34%), Positives = 105/179 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K+D +RTGR P+M + + + YG+ P+NQ+A+ +V EPRM Sbjct: 6 LLEAEEKMEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGAPTPINQLASFSVPEPRMA 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV+ +DK + ++E+ I +S+LG+NP +G ++R+ PE TEERR +KVA E +K Sbjct: 66 VVTPFDKTALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEERRREYIKVAKGKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +S+R++RR D + K K G+ ED E ++ T + +D + K+ E++ Sbjct: 126 VSIRSVRRKAKDAIDKLVKDGEVGEDEGRRAEKELDDTTAKYVAQVDELLKHKESELLE 184 >gi|15834673|ref|NP_296432.1| ribosome recycling factor [Chlamydia muridarum Nigg] gi|270284838|ref|ZP_06194232.1| ribosome recycling factor [Chlamydia muridarum Nigg] gi|270288867|ref|ZP_06195169.1| ribosome recycling factor [Chlamydia muridarum Weiss] gi|301336218|ref|ZP_07224420.1| ribosome recycling factor [Chlamydia muridarum MopnTet14] gi|3122779|sp|P71148|RRF_CHLMU RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|1518663|gb|AAB07072.1| ribosome-releasing factor [Chlamydia muridarum] gi|7190087|gb|AAF38937.1| ribosome recycling factor [Chlamydia muridarum Nigg] Length = 179 Score = 128 bits (321), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 66/177 (37%), Positives = 110/177 (62%), Gaps = 3/177 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + + M ++F +K++ RTG+ P++++ V VE YG+ + L+ +A+++V + R L Sbjct: 3 LTSAEKEMSGVLTFFQKEIRGFRTGKAHPALVETVTVEVYGTTMRLSDIASISVSDTRQL 62 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +D V+++ +GI +NL L PIVEG +RI VPE TEE R ++K +E++K Sbjct: 63 LISPYDAGNVSAISKGILAANLNLQPIVEGATVRINVPEPTEEYRREVIKQLKRKSEEAK 122 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +S+RNIRR D LK K +ED V LE IQ++TD K I+ ++K+ E+ Sbjct: 123 VSIRNIRRTCNDRLK---KDDSLTEDAVKGLEKKIQELTDKFCKQIEELAKQKEAEL 176 >gi|134102473|ref|YP_001108134.1| ribosome recycling factor [Saccharopolyspora erythraea NRRL 2338] gi|291004136|ref|ZP_06562109.1| ribosome recycling factor [Saccharopolyspora erythraea NRRL 2338] gi|166231222|sp|A4FMD4|RRF_SACEN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|133915096|emb|CAM05209.1| ribosome recycling factor [Saccharopolyspora erythraea NRRL 2338] Length = 185 Score = 128 bits (321), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 60/175 (34%), Positives = 110/175 (62%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 +++M + K ++ T+RTGR +P+M + V+ YGS PLNQ+A+++V E R++V+ Sbjct: 10 EEKMQKAVEVAKDELATVRTGRANPAMFSGIVVDYYGSPTPLNQLASISVPEARLVVIKP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +D + ++E+ I +S+LG+NP +GQ++R+ +P+ TEERR +VK+A E+ +I+VR Sbjct: 70 YDASQLGAMEKAIRDSDLGVNPSNDGQLIRVSIPQMTEERRKEMVKLAKHKGEEGRITVR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 IRR + + + K G+A ED E +++ +T + ID + K+ E++ Sbjct: 130 GIRRKVKEEIDRIVKDGEAGEDEGTRGEKELENLTHRYVAQIDELVKHKEAELLE 184 >gi|158338603|ref|YP_001519780.1| ribosome recycling factor [Acaryochloris marina MBIC11017] gi|158308844|gb|ABW30461.1| ribosome recycling factor [Acaryochloris marina MBIC11017] Length = 173 Score = 128 bits (321), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 64/170 (37%), Positives = 100/170 (58%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M +I +K+ + T+RTGR + S+LD + VE YG+ PL +A ++ + + + +D Sbjct: 1 MQKSIEAMKRSLNTIRTGRANASLLDRITVEYYGTETPLRSLATISTPDASTITIQPFDP 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 + +ER I S++GL P +G +R+ +P TEERR VK+A AE+ K+++RNIR Sbjct: 61 SSLTDIERSISLSDVGLVPNNDGSAIRLNIPPLTEERRKDFVKMAGKIAEEGKVAIRNIR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 RD +D +K KSG SED L++ IQ +TD +D EK+ EI Sbjct: 121 RDAIDTARKQGKSGDISEDESKDLQDKIQGLTDKYTGQVDKILAEKETEI 170 >gi|227497536|ref|ZP_03927764.1| ribosome recycling factor [Actinomyces urogenitalis DSM 15434] gi|226832990|gb|EEH65373.1| ribosome recycling factor [Actinomyces urogenitalis DSM 15434] Length = 185 Score = 128 bits (321), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 63/175 (36%), Positives = 108/175 (61%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 +++M + K+++ +RTGR +PSM + + V+ YG+ PL Q+A++T+ E R ++VS Sbjct: 10 EEKMEAALDAAKRELAAIRTGRANPSMFNSIVVDYYGAPTPLQQLASITIPEARTVIVSP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +D+ + + I ES+LG+NP +G V+R+ +P TEERR VK+A + AE+S+I VR Sbjct: 70 FDRGAMKEITSAIRESDLGVNPTDDGTVIRVTLPALTEERRKDYVKLARSRAEESRIQVR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 IR L+ +K G+A ED V E D+ +T +++ID+ K+ E++ Sbjct: 130 GIRGKSKKELEAIKKDGEAGEDDVKRAEGDLDALTKRFVESIDAALTAKEAELLE 184 >gi|160871855|ref|ZP_02061987.1| ribosome recycling factor [Rickettsiella grylli] gi|159120654|gb|EDP45992.1| ribosome recycling factor [Rickettsiella grylli] Length = 186 Score = 128 bits (321), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 67/174 (38%), Positives = 107/174 (61%), Gaps = 1/174 (0%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGS-HVPLNQVANVTVLEPRMLVVSVWD 72 M + LK ++ LRTGR PS+L+ ++V YG VPLN VA++TV + R L+V+ W+ Sbjct: 13 MQKALEALKANLAKLRTGRAHPSLLEQLRVPQYGGKEVPLNHVASITVADARTLLVTPWE 72 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K ++ +E+ I +S+LGLNP+ G V+R+P+ TEERR + K+ AE +++S+RN Sbjct: 73 KSLIPLIEKTILQSHLGLNPLTAGNVIRVPLALLTEERRRDMSKLVKKEAEDARVSIRNY 132 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 R+D LK K +ED + IQK+TD +I ++ + K++E+MH Sbjct: 133 RQDANHQLKNLVKKKLITEDEERRAKEMIQKMTDRSIVEVEKIAKVKEEELMHI 186 >gi|329936702|ref|ZP_08286409.1| ribosome recycling factor [Streptomyces griseoaurantiacus M045] gi|329303932|gb|EGG47815.1| ribosome recycling factor [Streptomyces griseoaurantiacus M045] Length = 185 Score = 128 bits (321), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 62/179 (34%), Positives = 105/179 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K+D +RTGR P+M + + + YG+ P+NQ+A+ +V EPRM Sbjct: 6 LLEAEEKMEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGAPTPINQLASFSVPEPRMA 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV+ +DK + ++E+ I +S+LG+NP +G ++R+ PE TEERR +KVA E +K Sbjct: 66 VVTPFDKTALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEERRREYIKVAKTKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 IS+R++RR D + K K G+ ED E ++ T + +D + K+ E++ Sbjct: 126 ISIRSVRRKAKDAIDKLIKDGEIGEDEGRRAEKELDDTTAKYVAQVDELLKHKEAELLE 184 >gi|307747174|gb|ADN90444.1| Ribosome-recycling factor [Campylobacter jejuni subsp. jejuni M1] Length = 187 Score = 128 bits (321), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 66/184 (35%), Positives = 111/184 (60%), Gaps = 2/184 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ + Q K + ++ LKKD TLRTG+V+ +LD + V+ YG+ PLNQVA V Sbjct: 4 LNEIFNKQ--KTQSEKSLEALKKDFTTLRTGKVNTHILDHITVDYYGTQTPLNQVATVLA 61 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + + ++ W+K ++ ++E I +N+G+NP +G+ +++ P T E+R VK A A Sbjct: 62 SDASTINITPWEKPLLKTIESAIAAANIGVNPNNDGESVKLFFPPMTREQREENVKQAKA 121 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 EK+K+S+RNIR+D D +KK K SED +++QK+TD+ ID + K+ Sbjct: 122 MGEKAKVSIRNIRKDANDAVKKLEKDKAISEDEAKKAYDEVQKLTDTYTTKIDESVKSKE 181 Query: 181 KEIM 184 E++ Sbjct: 182 SELL 185 >gi|87302617|ref|ZP_01085434.1| ribosome releasing factor [Synechococcus sp. WH 5701] gi|87282961|gb|EAQ74918.1| ribosome releasing factor [Synechococcus sp. WH 5701] Length = 179 Score = 127 bits (320), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 61/171 (35%), Positives = 105/171 (61%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M ++ ++ T+RTGR +PS+LD + +E YG+ PL VA+++ + + + + +D Sbjct: 7 MRKSLEATQRTFNTIRTGRANPSLLDKITIEYYGAETPLRSVASLSTPDSQTIQIQPFDS 66 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 +AS+E+ I S+LGL P +G+++RI +P T +RR K+A YAE K+++RNIR Sbjct: 67 AAMASIEKAIAMSDLGLTPNNDGRLIRINIPPLTADRRKEFCKLASRYAEDGKVALRNIR 126 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RD ++ +KK K G+ SED + +QK+TD I ++ EK+ +I+ Sbjct: 127 RDAIEKIKKQEKDGELSEDQSRDEQEKVQKLTDRFIVELEKSLAEKEADIL 177 >gi|166154019|ref|YP_001654137.1| ribosome recycling factor [Chlamydia trachomatis 434/Bu] gi|166154894|ref|YP_001653149.1| ribosome recycling factor [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335219|ref|ZP_07223463.1| ribosome recycling factor [Chlamydia trachomatis L2tet1] gi|238687396|sp|B0B8Q3|RRF_CHLT2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238687412|sp|B0BAD2|RRF_CHLTB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|165930007|emb|CAP03490.1| ribosome recycling factor [Chlamydia trachomatis 434/Bu] gi|165930882|emb|CAP06444.1| ribosome recycling factor [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 179 Score = 127 bits (320), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 66/177 (37%), Positives = 110/177 (62%), Gaps = 3/177 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + + M ++F +K+ RTG+ P++++ V VE YG+ + L+ +A+++V + R L Sbjct: 3 LASAEKEMAGVLTFFQKETRGFRTGKAHPALVETVTVEVYGTTMRLSDIASISVSDMRQL 62 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +D V+++ +GI +NL L PIVEG +RI VPE TEE R ++K +E++K Sbjct: 63 LISPYDAGTVSAISKGILAANLNLQPIVEGATVRINVPEPTEEYRREVIKQLKRKSEEAK 122 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +++RNIRR D LK K +ED V SLE IQ++TD K I+ ++K+ E+ Sbjct: 123 VAIRNIRRTFNDRLK---KDDNLTEDAVKSLEKKIQELTDKFCKQIEELAKQKEAEL 176 >gi|296268981|ref|YP_003651613.1| ribosome recycling factor [Thermobispora bispora DSM 43833] gi|296091768|gb|ADG87720.1| ribosome recycling factor [Thermobispora bispora DSM 43833] Length = 185 Score = 127 bits (320), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 62/178 (34%), Positives = 108/178 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M +S K+D T+R GR++P++ + + V+ YGS PL Q+A+ V E R++ Sbjct: 6 LLEAEEKMDKAVSVAKEDFATIRAGRITPAIFNKINVDYYGSPTPLQQLASFHVPEARLV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +DK + ++E+ I +S+LG+NP +G V+R+ PE +EERR +K+A AE ++ Sbjct: 66 IIQPFDKSALNAIEKAIRDSDLGVNPSNDGNVIRVVFPELSEERRKEYIKMARNKAESAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +SVRNIRR + L K K G+ ED V ++ +T + ID + K+ E++ Sbjct: 126 VSVRNIRRHAKEALDKLVKEGQVGEDEVHRAVKELDDLTHKHVAKIDDMLKHKEAELL 183 >gi|222097269|ref|YP_002531326.1| ribosome recycling factor [Bacillus cereus Q1] gi|221241327|gb|ACM14037.1| ribosome recycling factor [Bacillus cereus Q1] Length = 134 Score = 127 bits (320), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 64/132 (48%), Positives = 89/132 (67%) Query: 54 QVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLA 113 Q+AN+TV E R+LV+ +DK + +E+ I +++LGLNP +G V+RI P TEERR Sbjct: 2 QLANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRD 61 Query: 114 LVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNID 173 LVKV YAE++K++VRN+RRDG D LKK K+G+ +ED + DIQK TD I +D Sbjct: 62 LVKVVKKYAEEAKVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVD 121 Query: 174 SFFEEKKKEIMH 185 + K+KEIM Sbjct: 122 EIAKNKEKEIME 133 >gi|160915170|ref|ZP_02077383.1| hypothetical protein EUBDOL_01178 [Eubacterium dolichum DSM 3991] gi|158432969|gb|EDP11258.1| hypothetical protein EUBDOL_01178 [Eubacterium dolichum DSM 3991] Length = 180 Score = 127 bits (320), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 66/178 (37%), Positives = 111/178 (62%), Gaps = 3/178 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q + +M + L++++ T+RTG + ++L+ V E YGS +P+NQ+A + V+E R L Sbjct: 4 MQTAEHKMQSAVEVLEQELKTIRTGMANAAILEHVTFEYYGSPMPINQMAGIKVVEGRQL 63 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK + +ER I S++GL P +G +R+ VP TEERR VK A E +K Sbjct: 64 MITPYDKGTLKDIERAIAMSDIGLVPQNDGDCIRLNVPALTEERRKEFVKDASKMGENAK 123 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 I++RN+RRD D +KK + + +ED L++ IQK+TD +K ++ + K KEI+ Sbjct: 124 IAIRNVRRDANDTIKKDK---ELTEDESKDLQDKIQKLTDKFVKLVEQAVDAKSKEIL 178 >gi|254392087|ref|ZP_05007276.1| ribosome recycling factor [Streptomyces clavuligerus ATCC 27064] gi|326443741|ref|ZP_08218475.1| ribosome recycling factor [Streptomyces clavuligerus ATCC 27064] gi|197705763|gb|EDY51575.1| ribosome recycling factor [Streptomyces clavuligerus ATCC 27064] Length = 185 Score = 127 bits (320), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 63/179 (35%), Positives = 106/179 (59%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K+D +RTGR P+M + + + YG+ P+NQ+A+ +V EPRM Sbjct: 6 LLEAEEKMEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMA 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV+ +DK + ++E+ I +S+LG+NP +G ++R+ PE TEERR +KVA AE SK Sbjct: 66 VVTPFDKTALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEERRRDYIKVAKGKAEDSK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 IS+R++RR + + K K G+ ED E ++ T + +D + K+ E++ Sbjct: 126 ISIRSVRRKAKEAIDKLVKDGEVGEDEGRRGEKELDDTTAKYVAQVDELLKHKEAELLE 184 >gi|78212260|ref|YP_381039.1| ribosome recycling factor [Synechococcus sp. CC9605] gi|123578616|sp|Q3ALP8|RRF_SYNSC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|78196719|gb|ABB34484.1| ribosome recycling factor [Synechococcus sp. CC9605] Length = 182 Score = 127 bits (320), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 61/177 (34%), Positives = 106/177 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+++ M ++ +++ T+RTGR + S+LD + VE YG+ PL +A ++ + + + Sbjct: 4 QDLEASMRKSVEATQRNFNTIRTGRANSSLLDRISVEYYGAETPLKSLATLSTPDSQTIQ 63 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +D +AS+E+ I S LG P +G+++RI VP TEERR K+A YAE+ K+ Sbjct: 64 IQPFDISALASIEKAIAMSELGFTPNNDGKIIRINVPPLTEERRKEFCKLASKYAEEGKV 123 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++RN+RRD +D +KK K G+ SED ++ +QK D I ++ K+ +I+ Sbjct: 124 ALRNLRRDAIDKIKKQEKEGEFSEDQSRDEQDGVQKTLDKFIAELEKHLASKEADIL 180 >gi|255507284|ref|ZP_05382923.1| ribosome recycling factor [Chlamydia trachomatis D(s)2923] gi|289525721|emb|CBJ15202.1| ribosome recycling factor [Chlamydia trachomatis Sweden2] gi|296435291|gb|ADH17469.1| ribosome recycling factor [Chlamydia trachomatis E/150] gi|296439009|gb|ADH21162.1| ribosome recycling factor [Chlamydia trachomatis E/11023] Length = 179 Score = 127 bits (320), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 66/177 (37%), Positives = 110/177 (62%), Gaps = 3/177 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + + M ++F +K+ RTG+ P++++ V VE YG+ + L+ +A+++V + R L Sbjct: 3 LASAEKEMSGVLTFFQKETRGFRTGKAHPALVETVTVEVYGTTMRLSDIASISVSDMRQL 62 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +D V+++ +GI +NL L PIVEG +RI VPE TEE R ++K +E++K Sbjct: 63 LISPYDAGTVSAISKGILAANLNLQPIVEGATVRINVPEPTEEYRREVIKQLKRKSEEAK 122 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +++RNIRR D LK K +ED V SLE IQ++TD K I+ ++K+ E+ Sbjct: 123 VAIRNIRRTFNDRLK---KDDSLTEDAVKSLEKKIQELTDKFCKQIEELAKQKEAEL 176 >gi|121612237|ref|YP_999947.1| ribosome recycling factor [Campylobacter jejuni subsp. jejuni 81-176] gi|167004904|ref|ZP_02270662.1| ribosome recycling factor [Campylobacter jejuni subsp. jejuni 81-176] gi|166230776|sp|A1VXV6|RRF_CAMJJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|87250479|gb|EAQ73437.1| ribosome recycling factor [Campylobacter jejuni subsp. jejuni 81-176] Length = 185 Score = 127 bits (320), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 66/184 (35%), Positives = 111/184 (60%), Gaps = 2/184 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ + Q K + ++ LKKD TLRTG+V+ +LD + V+ YG+ PLNQVA V Sbjct: 2 LNEIFNKQ--KTQSEKSLEALKKDFTTLRTGKVNIHILDHITVDYYGTQTPLNQVATVLA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + + ++ W+K ++ ++E I +N+G+NP +G+ +++ P T E+R VK A A Sbjct: 60 SDASTISITPWEKPLLKTIESAIAAANIGVNPNNDGESVKLFFPPMTREQREENVKQAKA 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 EK+K+S+RNIR+D D +KK K SED +++QK+TD+ ID + K+ Sbjct: 120 MGEKAKVSIRNIRKDANDAVKKLEKDKAISEDEAKKAYDEVQKLTDTYTTKIDESVKSKE 179 Query: 181 KEIM 184 E++ Sbjct: 180 SELL 183 >gi|255349066|ref|ZP_05381073.1| ribosome recycling factor [Chlamydia trachomatis 70] gi|255503604|ref|ZP_05381994.1| ribosome recycling factor [Chlamydia trachomatis 70s] Length = 179 Score = 127 bits (320), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 66/177 (37%), Positives = 110/177 (62%), Gaps = 3/177 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + + M ++F +K+ RTG+ P++++ V VE YG+ + L+ +A+++V + R L Sbjct: 3 LASAEKEMSGVLTFFQKETRGFRTGKAHPALVETVTVEVYGTTMRLSDIASISVSDMRQL 62 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +D V+++ +GI +NL L PIVEG +RI VPE TEE R ++K +E++K Sbjct: 63 LISPYDAGTVSAISKGILAANLNLQPIVEGATVRINVPEPTEEYRREVIKQLKRKSEEAK 122 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +++RNIRR D LK K +ED V SLE IQ++TD K I+ ++K+ E+ Sbjct: 123 VAIRNIRRTFNDRLK---KDDNLTEDAVKSLEKKIQELTDKFCKQIEELTKQKEAEL 176 >gi|161567479|ref|YP_321148.2| ribosome recycling factor [Anabaena variabilis ATCC 29413] Length = 187 Score = 127 bits (319), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 62/180 (34%), Positives = 108/180 (60%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 ++ L + +M T+ ++ T+RTGR + S+LD V V+ YGS PL +AN++ + Sbjct: 5 LVKLAEAESKMQHTVEATQRAFNTIRTGRANASLLDKVLVDYYGSPTPLKSLANISTPDA 64 Query: 64 RMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAE 123 + + +DK + +E+ I S++GL P +G +R+ +P T +RR LVK+A YAE Sbjct: 65 TTIQIQPYDKTSLNIIEKAISLSDVGLTPSNDGSAIRLNIPPLTSDRRKELVKLAAKYAE 124 Query: 124 KSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 + ++++RNIRRD +D ++K K+ + SED ++ +QK+T+ ID EK+K+I Sbjct: 125 EGRVAIRNIRRDAIDSIRKQEKNAEVSEDEAKDQQDKLQKLTNKYTARIDELLAEKEKDI 184 >gi|291454429|ref|ZP_06593819.1| ribosome recycling factor [Streptomyces albus J1074] gi|291357378|gb|EFE84280.1| ribosome recycling factor [Streptomyces albus J1074] Length = 185 Score = 127 bits (319), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 62/179 (34%), Positives = 105/179 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K+D +RTGR P+M + + + YG+ P+NQ+A+ +V EPRM Sbjct: 6 LLEAEEKMEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMA 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV+ +D + ++E+ I +S+LG+NP +G+++R+ PE TEERR +KVA AE SK Sbjct: 66 VVTPFDSSALRNIEQAIRDSDLGVNPSNDGRIIRVSFPELTEERRREFIKVAKGKAEDSK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 IS+R +RR + + K K G+ ED E ++ T + +D + K+ E++ Sbjct: 126 ISIRAVRRKAKETIDKLVKDGEVGEDEGRRGEKELDDTTAKYVAQVDELLKHKEAELLE 184 >gi|86149668|ref|ZP_01067898.1| ribosome recycling factor [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597400|ref|ZP_01100635.1| ribosome recycling factor [Campylobacter jejuni subsp. jejuni 84-25] gi|22001955|sp|Q9PIR0|RRF_CAMJE RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|85839936|gb|EAQ57195.1| ribosome recycling factor [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190461|gb|EAQ94435.1| ribosome recycling factor [Campylobacter jejuni subsp. jejuni 84-25] gi|284925510|gb|ADC27862.1| ribosome recycling factor [Campylobacter jejuni subsp. jejuni IA3902] gi|315930894|gb|EFV09879.1| ribosome recycling factor [Campylobacter jejuni subsp. jejuni 305] Length = 185 Score = 127 bits (319), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 66/184 (35%), Positives = 111/184 (60%), Gaps = 2/184 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ + Q K + ++ LKKD TLRTG+V+ +LD + V+ YG+ PLNQVA V Sbjct: 2 LNEIFNKQ--KTQSEKSLEALKKDFTTLRTGKVNIHILDHITVDYYGTQTPLNQVATVLA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + + ++ W+K ++ ++E I +N+G+NP +G+ +++ P T E+R VK A A Sbjct: 60 SDASTISITPWEKPLLKTIESAIAAANIGVNPNNDGESVKLFFPPMTREQREENVKQAKA 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 EK+K+S+RNIR+D D +KK K SED +++QK+TD+ ID + K+ Sbjct: 120 MGEKAKVSIRNIRKDANDAVKKLEKDKAISEDEAKKAYDEVQKLTDTYTTKIDEGVKSKE 179 Query: 181 KEIM 184 E++ Sbjct: 180 SELL 183 >gi|218561898|ref|YP_002343677.1| ribosome recycling factor [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|112359604|emb|CAL34389.1| ribosome recycling factor [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315928162|gb|EFV07480.1| ribosome recycling factor [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 187 Score = 127 bits (319), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 66/184 (35%), Positives = 111/184 (60%), Gaps = 2/184 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ + Q K + ++ LKKD TLRTG+V+ +LD + V+ YG+ PLNQVA V Sbjct: 4 LNEIFNKQ--KTQSEKSLEALKKDFTTLRTGKVNIHILDHITVDYYGTQTPLNQVATVLA 61 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + + ++ W+K ++ ++E I +N+G+NP +G+ +++ P T E+R VK A A Sbjct: 62 SDASTISITPWEKPLLKTIESAIAAANIGVNPNNDGESVKLFFPPMTREQREENVKQAKA 121 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 EK+K+S+RNIR+D D +KK K SED +++QK+TD+ ID + K+ Sbjct: 122 MGEKAKVSIRNIRKDANDAVKKLEKDKAISEDEAKKAYDEVQKLTDTYTTKIDEGVKSKE 181 Query: 181 KEIM 184 E++ Sbjct: 182 SELL 185 >gi|239982586|ref|ZP_04705110.1| ribosome recycling factor [Streptomyces albus J1074] Length = 186 Score = 127 bits (319), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 62/179 (34%), Positives = 105/179 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K+D +RTGR P+M + + + YG+ P+NQ+A+ +V EPRM Sbjct: 7 LLEAEEKMEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMA 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV+ +D + ++E+ I +S+LG+NP +G+++R+ PE TEERR +KVA AE SK Sbjct: 67 VVTPFDSSALRNIEQAIRDSDLGVNPSNDGRIIRVSFPELTEERRREFIKVAKGKAEDSK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 IS+R +RR + + K K G+ ED E ++ T + +D + K+ E++ Sbjct: 127 ISIRAVRRKAKETIDKLVKDGEVGEDEGRRGEKELDDTTAKYVAQVDELLKHKEAELLE 185 >gi|318056584|ref|ZP_07975307.1| ribosome recycling factor [Streptomyces sp. SA3_actG] gi|318075679|ref|ZP_07983011.1| ribosome recycling factor [Streptomyces sp. SA3_actF] gi|333024152|ref|ZP_08452216.1| putative ribosome recycling factor [Streptomyces sp. Tu6071] gi|332744004|gb|EGJ74445.1| putative ribosome recycling factor [Streptomyces sp. Tu6071] Length = 186 Score = 127 bits (319), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 60/173 (34%), Positives = 102/173 (58%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M + K+D+ +RTGR P+M + + + YG+ P+NQ+A+ +V EPRM VV+ +D Sbjct: 13 KMEKAVVVAKEDLAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMAVVTPFD 72 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K + ++E+ I +S+LG+NP +G ++R+ PE TEERR +KVA E +++S+R + Sbjct: 73 KSALRNIEQAIRDSDLGVNPSNDGHIIRVVFPELTEERRKEFIKVARTKGEDARVSIRAV 132 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 RR D L K K + ED V E ++ T + +D + K+ E++ Sbjct: 133 RRKAKDALDKLVKDKETGEDEVRRAEKELDDTTAKYVAQVDELLKHKESELLE 185 >gi|33866285|ref|NP_897844.1| ribosome recycling factor [Synechococcus sp. WH 8102] gi|39932068|sp|Q7U5F4|RRF_SYNPX RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|33639260|emb|CAE08268.1| ribosome recycling factor protein Rrf [Synechococcus sp. WH 8102] Length = 182 Score = 127 bits (319), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 61/177 (34%), Positives = 106/177 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+++ M ++ +++ T+RTGR + S+LD + VE YG+ PL +A ++ + + + Sbjct: 4 QDLEASMRKSVEATQRNFNTIRTGRANSSLLDRISVEYYGAETPLKSLATLSTPDSQTIQ 63 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +D +AS+E+ I S LG P +G+++RI VP TEERR K+A YAE+ K+ Sbjct: 64 IQPFDISALASIEKAIAMSELGFTPNNDGKIIRINVPPLTEERRKEFCKLASKYAEEGKV 123 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++RN+RRD +D +KK K G SED ++ +QK D I ++ +K+ +I+ Sbjct: 124 ALRNLRRDAIDKVKKQEKDGDFSEDQSRDEQDAVQKTLDKFIAELEKHLADKEADIL 180 >gi|237805028|ref|YP_002889182.1| ribosome recycling factor [Chlamydia trachomatis B/TZ1A828/OT] gi|231273328|emb|CAX10243.1| ribosome recycling factor [Chlamydia trachomatis B/TZ1A828/OT] Length = 179 Score = 127 bits (319), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 65/177 (36%), Positives = 110/177 (62%), Gaps = 3/177 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + + M ++F +K+ +TG+ P+M++ V +E YG+ + L+ +A+++V + R L Sbjct: 3 LASAEKEMAGVLTFFQKETRGFKTGKAHPAMVETVTIEVYGTTMRLSDIASISVSDMRQL 62 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +D V+++ +GI +NL L PIVEG +RI VPE TEE R ++K +E++K Sbjct: 63 LISPYDAGTVSAISKGILAANLNLQPIVEGATVRINVPEPTEEYRREVIKQLKRKSEEAK 122 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +++RNIRR D LK K +ED V SLE IQ++TD K I+ ++K+ E+ Sbjct: 123 VAIRNIRRTFNDRLK---KDDSLTEDAVKSLEKKIQELTDKFCKQIEELAKQKEAEL 176 >gi|227495072|ref|ZP_03925388.1| ribosome recycling factor [Actinomyces coleocanis DSM 15436] gi|226831524|gb|EEH63907.1| ribosome recycling factor [Actinomyces coleocanis DSM 15436] Length = 185 Score = 127 bits (319), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 60/171 (35%), Positives = 107/171 (62%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M ++ K++ +RTGR +P + + V+ YG+ PL Q+A+V + E RM++VS +D+ Sbjct: 13 MEKALAATKREFGNIRTGRANPETFNSLLVDYYGAPTPLQQLASVQIPEARMVLVSPYDR 72 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 + ++ I ES+LG+NP +G V+R +P TEERR VK+A + AE ++S+RN+R Sbjct: 73 SAMQAIITAIRESDLGVNPTDDGNVIRCTLPALTEERRKEYVKLAKSKAEDGRVSIRNVR 132 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 R + L + +K G+A ED V E +++ +T + + +D+ + K+K++M Sbjct: 133 RKAKEELDRIKKDGEAGEDEVERAEKELETLTKNFVAKVDAELDAKEKDLM 183 >gi|116075317|ref|ZP_01472577.1| ribosome releasing factor [Synechococcus sp. RS9916] gi|116067514|gb|EAU73268.1| ribosome releasing factor [Synechococcus sp. RS9916] Length = 182 Score = 127 bits (319), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 64/177 (36%), Positives = 105/177 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+++ M ++ ++ T+RTGR + S+LD + VE YG+ PL +A +T + + + Sbjct: 4 QDLEASMQKSVEATQRMFNTIRTGRANSSLLDRISVEYYGADTPLKSLATLTTPDSQTIQ 63 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +D +AS+E+ I S LG P +G+++RI VP TEERR K+A YAE+ K+ Sbjct: 64 IQPFDMGALASIEKAIAMSELGFTPNNDGKLIRINVPPLTEERRKEFCKLASKYAEEGKV 123 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++RNIRRD +D +KK K G SED ++ +QK D I ++ EK+ +I+ Sbjct: 124 ALRNIRRDAIDKIKKQEKDGDFSEDQSHDEQDSVQKTLDKYIGILEKHLAEKEADIL 180 >gi|294786947|ref|ZP_06752201.1| ribosome recycling factor [Parascardovia denticolens F0305] gi|315226584|ref|ZP_07868372.1| ribosome recycling factor [Parascardovia denticolens DSM 10105] gi|294485780|gb|EFG33414.1| ribosome recycling factor [Parascardovia denticolens F0305] gi|315120716|gb|EFT83848.1| ribosome recycling factor [Parascardovia denticolens DSM 10105] Length = 183 Score = 127 bits (319), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 65/172 (37%), Positives = 104/172 (60%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M TI K++ + +RTGR +P++ + + V+ YG+ L +A++ V + R L V+ +D Sbjct: 10 QMDKTIETTKENFVGIRTGRANPALFNGLTVDYYGAPTSLKALASIGVADNRTLSVTPFD 69 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 S+E+ I +S+LG+NP +G V+ + +PE TEERR VK+AH AE+ K++VRNI Sbjct: 70 VTQAGSIEKAIRDSDLGVNPRRDGNVIHVTLPELTEERRKDYVKLAHEIAERGKVAVRNI 129 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RR + + K+ K G ED L D+ K T + ID+ E K+KEI+ Sbjct: 130 RRKTKEGIDKATKDGDFGEDEGKRLLTDLDKATKKATEEIDTLLETKEKEIL 181 >gi|295836271|ref|ZP_06823204.1| ribosome recycling factor [Streptomyces sp. SPB74] gi|302522178|ref|ZP_07274520.1| ribosome recycling factor [Streptomyces sp. SPB78] gi|197697364|gb|EDY44297.1| ribosome recycling factor [Streptomyces sp. SPB74] gi|302431073|gb|EFL02889.1| ribosome recycling factor [Streptomyces sp. SPB78] Length = 185 Score = 127 bits (319), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 60/173 (34%), Positives = 102/173 (58%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M + K+D+ +RTGR P+M + + + YG+ P+NQ+A+ +V EPRM VV+ +D Sbjct: 12 KMEKAVVVAKEDLAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMAVVTPFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K + ++E+ I +S+LG+NP +G ++R+ PE TEERR +KVA E +++S+R + Sbjct: 72 KSALRNIEQAIRDSDLGVNPSNDGHIIRVVFPELTEERRKEFIKVARTKGEDARVSIRAV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 RR D L K K + ED V E ++ T + +D + K+ E++ Sbjct: 132 RRKAKDALDKLVKDKETGEDEVRRAEKELDDTTAKYVAQVDELLKHKESELLE 184 >gi|268680896|ref|YP_003305327.1| ribosome recycling factor [Sulfurospirillum deleyianum DSM 6946] gi|268618927|gb|ACZ13292.1| ribosome recycling factor [Sulfurospirillum deleyianum DSM 6946] Length = 186 Score = 127 bits (318), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 62/174 (35%), Positives = 111/174 (63%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K+ M I+ LK+D T+R+G+VS S+LD + V+ YG+ LNQVA + + + ++ Sbjct: 11 KEHMEKCIAALKRDFTTIRSGKVSISILDNIHVDYYGTPTALNQVATILATDATTITITP 70 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 W+K+M+ +E+ I ++N+G+NP +G+ +++ P T E+R K A A +K+KI++R Sbjct: 71 WEKKMLREIEKAIMQANIGVNPNNDGESVKLFFPPMTTEQRKESAKQAKAMGDKAKIAIR 130 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 N+R+D D +KK K +ED ++++QKITD+T+ +D +EK+ E++ Sbjct: 131 NVRKDANDQVKKLEKDKLITEDQSKKGQDEVQKITDATVTKVDDLVKEKEAEVL 184 >gi|302537209|ref|ZP_07289551.1| ribosome recycling factor [Streptomyces sp. C] gi|302446104|gb|EFL17920.1| ribosome recycling factor [Streptomyces sp. C] Length = 185 Score = 127 bits (318), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 59/173 (34%), Positives = 103/173 (59%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M + K+D +RTGR P+M + + + YG+ P+NQ+A+ V EPRM +V+ +D Sbjct: 12 KMEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGAITPINQLASFAVPEPRMAIVTPFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + ++E+ I +S+LG+NP +G+++R+ PE T++RR +KVA AE S++S+R++ Sbjct: 72 ASALRNIEQAIRDSDLGVNPSNDGRIIRVTFPELTQDRRKEFIKVAKTKAEDSRVSIRSV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 RR D L K K +A ED V E ++ T + +D + K+ E++ Sbjct: 132 RRKAKDALDKLVKDKEAGEDEVRRAEKELDDTTAKYVAQVDELLKHKESELLE 184 >gi|18412657|ref|NP_567141.1| RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR) [Arabidopsis thaliana] gi|22001953|sp|Q9M1X0|RRFC_ARATH RecName: Full=Ribosome-recycling factor, chloroplastic; Short=RRF; AltName: Full=CpFrr; AltName: Full=RRFHCP; AltName: Full=Ribosome-releasing factor, chloroplastic; Flags: Precursor gi|13926252|gb|AAK49599.1|AF372883_1 AT3g63190/F16M2_40 [Arabidopsis thaliana] gi|15982709|gb|AAL09724.1| AT3g63190/F16M2_40 [Arabidopsis thaliana] gi|20260166|gb|AAM12981.1| putative protein [Arabidopsis thaliana] gi|27363350|gb|AAO11594.1| At3g63190/F16M2_40 [Arabidopsis thaliana] gi|332646925|gb|AEE80446.1| ribosome-recycling factor [Arabidopsis thaliana] Length = 275 Score = 127 bits (318), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 65/177 (36%), Positives = 109/177 (61%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 ++K +M TI L+ ++RTGR + +MLD ++VE YGS V L +A ++ + L++ Sbjct: 98 DVKSKMEKTIETLRTSFNSIRTGRSNAAMLDKIEVEYYGSPVSLKSIAQISTPDGSSLLL 157 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 +DK + ++E+ I S+LG+ P +G V+R+ +P T +RR L KV +E+ K++ Sbjct: 158 QPYDKSSLKAIEKAIVNSDLGVTPNNDGDVIRLSLPPLTSDRRKELSKVVAKQSEEGKVA 217 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +RNIRRD + K K K SED V L +D+QK+ D +K I+ +++K+KE+M Sbjct: 218 LRNIRRDALKSYDKLEKEKKLSEDNVKDLSSDLQKLIDVYMKKIEELYKQKEKELMK 274 >gi|187735811|ref|YP_001877923.1| ribosome recycling factor [Akkermansia muciniphila ATCC BAA-835] gi|238691857|sp|B2UKL9|RRF_AKKM8 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|187425863|gb|ACD05142.1| ribosome recycling factor [Akkermansia muciniphila ATCC BAA-835] Length = 188 Score = 127 bits (318), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 68/180 (37%), Positives = 108/180 (60%), Gaps = 2/180 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDL--VKVEAYGSHVPLNQVANVTVLEPR 64 L ++ M + F K++ +RTG+ SP +++ V V +YGS + L +A ++ EPR Sbjct: 7 LLETEESMLKAVDFAKQEFSGVRTGKASPGLVENLDVHVSSYGSVMKLKGLAVISTPEPR 66 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 ++++ +D V + R I+ES L LNP+VEG+ +R+P+P TEERR LVK+ + AE+ Sbjct: 67 LILIQPFDPSTVHDIGRAINESKLNLNPLVEGRSIRLPIPALTEERRKDLVKLVKSQAEE 126 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++ VR R+ MD KK + +ED LE IQK+TD +K ID K+K+IM Sbjct: 127 ARVRVRGARKAAMDSAKKLKAENIVTEDGQRDLETQIQKLTDKYVKEIDELVAVKEKDIM 186 >gi|254382047|ref|ZP_04997409.1| ribosome recycling factor [Streptomyces sp. Mg1] gi|194340954|gb|EDX21920.1| ribosome recycling factor [Streptomyces sp. Mg1] Length = 185 Score = 127 bits (318), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 60/173 (34%), Positives = 102/173 (58%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M + K+D +RTGR P+M + + + YG+ P+NQ+A+ V EPRM +V+ +D Sbjct: 12 KMEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGAITPINQLASFAVPEPRMAIVTPFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + ++E+ I +S+LG+NP +G+++R+ PE T++RR +KVA AE SK+S+R + Sbjct: 72 ASALRNIEQAIRDSDLGVNPSNDGRIIRVTFPELTQDRRKEYIKVARTKAEDSKVSIRAV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 RR D L K K +A ED V E ++ T + +D + K+ E++ Sbjct: 132 RRKAKDALDKLVKDKEAGEDEVRRAEKELDDTTAKYVAQVDELLKHKEAELLE 184 >gi|284037276|ref|YP_003387206.1| ribosome recycling factor [Spirosoma linguale DSM 74] gi|283816569|gb|ADB38407.1| ribosome recycling factor [Spirosoma linguale DSM 74] Length = 186 Score = 127 bits (318), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 69/178 (38%), Positives = 109/178 (61%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + KD M + L ++ +R G+ + MLD ++VE YG PL+ VA++ + R + Sbjct: 8 LDDAKDTMEKALKHLAIELTKIRAGKANAGMLDGIQVEYYGMLSPLHTVASINTPDARTI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +++++++ VE+ I SNLGLNP +G+ +R+ +P TEERR LVK E +K Sbjct: 68 VIKPFERKLISEVEKAIRNSNLGLNPNNDGEQIRLSIPPLTEERRRDLVKKVKQEVETAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++VRNIR+D D ++K K G SED V E +QK+TD+ I ID F K+++IM Sbjct: 128 VNVRNIRKDTNDDIRKLVKDG-VSEDAVKVGEERVQKLTDAFIARIDETFVAKERDIM 184 >gi|302554446|ref|ZP_07306788.1| ribosome recycling factor [Streptomyces viridochromogenes DSM 40736] gi|302472064|gb|EFL35157.1| ribosome recycling factor [Streptomyces viridochromogenes DSM 40736] Length = 185 Score = 127 bits (318), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 61/179 (34%), Positives = 105/179 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K+D +RTGR P+M + + + YG+ P+NQ+A+ +V EPRM Sbjct: 6 LLEAEEKMEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGAPTPINQLASFSVPEPRMA 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV+ +DK + ++E+ I +S+LG+NP +G ++R+ PE TEERR +KVA E +K Sbjct: 66 VVTPFDKSALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEERRREYIKVAKGKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 IS+R++RR + + K K G+ ED E ++ T + +D + K+ E++ Sbjct: 126 ISIRSVRRKAKEAIDKLIKDGEVGEDEGRRAEKELDDTTAKYVTQVDELLKHKEAELLE 184 >gi|29829166|ref|NP_823800.1| ribosome recycling factor [Streptomyces avermitilis MA-4680] gi|34924903|sp|Q82JY0|RRF_STRAW RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|29606272|dbj|BAC70335.1| putative ribosome recycling factor [Streptomyces avermitilis MA-4680] Length = 185 Score = 127 bits (318), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 61/179 (34%), Positives = 105/179 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K+D +RTGR P+M + + + YG+ P+NQ+A+ +V EPRM Sbjct: 6 LLEAEEKMEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMA 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV+ +DK + ++E+ I +S+LG+NP +G ++R+ PE TEERR +KVA E +K Sbjct: 66 VVTPFDKSALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEERRKDYIKVAKTKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +S+R++RR D + K K G+ ED E ++ T + +D + K+ E++ Sbjct: 126 VSIRSVRRKAKDAIDKLIKDGEVGEDEGRRAEKELDDTTAKYVAQVDELLKHKEAELLE 184 >gi|126666177|ref|ZP_01737157.1| ribosome recycling factor [Marinobacter sp. ELB17] gi|126629499|gb|EBA00117.1| ribosome recycling factor [Marinobacter sp. ELB17] Length = 185 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 72/172 (41%), Positives = 101/172 (58%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M +I L +RTGR PS+LD V V YG PL QVA+V V + R L VS W+ Sbjct: 12 KMTKSIEALASAFNKIRTGRAHPSILDSVMVNYYGQETPLRQVASVNVEDSRTLTVSPWE 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K +V +E+ I S+LGLNP G ++R+P+P TEE R +VK A A AE ++SVRN Sbjct: 72 KNLVPQIEKAIMTSDLGLNPSTSGDLIRLPMPMLTEETRKNMVKQARADAEHGRVSVRNA 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD LK+ K SED E ++QK+TD I ++ + K++++M Sbjct: 132 RRDANSTLKELLKDKDISEDDERRGEEEVQKLTDRFIAEVEKLLKGKEEDLM 183 >gi|116072186|ref|ZP_01469453.1| ribosome releasing factor [Synechococcus sp. BL107] gi|116064708|gb|EAU70467.1| ribosome releasing factor [Synechococcus sp. BL107] Length = 182 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 63/177 (35%), Positives = 106/177 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++++ M ++ +++ T+RTGR + S+LD + VE YG+ PL +A ++ + + + Sbjct: 4 KDLEASMHKSLEATQRNFNTIRTGRANSSLLDRISVEYYGAETPLKSLATLSTPDSQTIQ 63 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +D +AS+E+ I S LG P +G+V+RI VP TEERR K+A YAE+ K+ Sbjct: 64 IQPFDISALASIEKAIAMSELGFTPNNDGKVIRINVPPLTEERRKEFCKLASRYAEEGKV 123 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++RN+RRD +D +KK K G SED ++ IQK+ D I ++ EK+ I+ Sbjct: 124 ALRNLRRDAIDKVKKQEKDGDFSEDQSRDEQDSIQKVLDKNIVALEKQLAEKEAAIL 180 >gi|254415746|ref|ZP_05029504.1| ribosome recycling factor [Microcoleus chthonoplastes PCC 7420] gi|196177452|gb|EDX72458.1| ribosome recycling factor [Microcoleus chthonoplastes PCC 7420] Length = 173 Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 64/170 (37%), Positives = 101/170 (59%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M + ++ T+RTGR + S+LD V VE YGS PL +A++ + + + +DK Sbjct: 1 MKKAVEATQRGFNTIRTGRANASLLDRVMVEYYGSPTPLKSLASINTPDATTITIQPYDK 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 + +E+ I S++GL P +GQV+R+ +P T ERR VK+A AE+ K+S+RNIR Sbjct: 61 STLTLIEKSISLSDIGLTPNNDGQVVRLNIPPLTSERRQEFVKMAGKLAEEGKVSIRNIR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 RD +D ++K K+ + SED L++ IQ++TD ID K+K+I Sbjct: 121 RDAVDSVRKQEKNSEISEDESRDLQDQIQQLTDKYTAKIDDLLVAKEKDI 170 >gi|294815389|ref|ZP_06774032.1| Ribosome-recycling factor [Streptomyces clavuligerus ATCC 27064] gi|294327988|gb|EFG09631.1| Ribosome-recycling factor [Streptomyces clavuligerus ATCC 27064] Length = 173 Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 62/172 (36%), Positives = 102/172 (59%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M + K+D +RTGR P+M + + + YG+ P+NQ+A+ +V EPRM VV+ +DK Sbjct: 1 MEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMAVVTPFDK 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 + ++E+ I +S+LG+NP +G ++R+ PE TEERR +KVA AE SKIS+R++R Sbjct: 61 TALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEERRRDYIKVAKGKAEDSKISIRSVR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 R + + K K G+ ED E ++ T + +D + K+ E++ Sbjct: 121 RKAKEAIDKLVKDGEVGEDEGRRGEKELDDTTAKYVAQVDELLKHKEAELLE 172 >gi|307330053|ref|ZP_07609204.1| ribosome recycling factor [Streptomyces violaceusniger Tu 4113] gi|306884314|gb|EFN15349.1| ribosome recycling factor [Streptomyces violaceusniger Tu 4113] Length = 185 Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 61/179 (34%), Positives = 105/179 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K+D +RTGR P+M + + + YG+ P+NQ+A+ +V EPRM Sbjct: 6 LLEAEEKMEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMA 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV+ +DK + ++E+ I +S+LG+NP +G ++R+ PE TE+RR +KVA A E +K Sbjct: 66 VVTPFDKTALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEQRRKEFIKVAKAKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 IS+R++RR + + K K G ED E ++ T + +D + K+ E++ Sbjct: 126 ISIRSVRRKAKESIDKLIKDGDVGEDEGRRAEKELDDTTAKYVAQVDELLKHKEAELLE 184 >gi|298489665|ref|YP_003719842.1| ribosome recycling factor ['Nostoc azollae' 0708] gi|298231583|gb|ADI62719.1| ribosome recycling factor ['Nostoc azollae' 0708] Length = 182 Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 59/177 (33%), Positives = 107/177 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +M T+ ++ T+RTGR + S+LD ++VE YGS PL +AN++ + + Sbjct: 3 LAEAESKMQKTVESTQQAFNTIRTGRANASLLDRIQVEYYGSPTPLKSLANISTPDASTI 62 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D+ + +E+ I S++G+ P +G V+R+ +P T +RR K+A YAE+ + Sbjct: 63 LIQPYDRSSLNILEKAISLSDIGITPSNDGSVIRLNIPPLTSDRRKEFAKLAAKYAEEGR 122 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 + +RNIRRD +D ++K K+ + SED ++ +QK+T+ + ID EK+K+I Sbjct: 123 VGIRNIRRDALDSIRKQEKAAEISEDESRDQQDKLQKLTNKYTEKIDHLLTEKEKDI 179 >gi|269955983|ref|YP_003325772.1| ribosome recycling factor [Xylanimonas cellulosilytica DSM 15894] gi|269304664|gb|ACZ30214.1| ribosome recycling factor [Xylanimonas cellulosilytica DSM 15894] Length = 185 Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 63/175 (36%), Positives = 105/175 (60%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 +++M I K+D +RTGR + M + V+ YG+ PL Q+A+ + E R +++S Sbjct: 10 EEKMDKAIEVAKEDFAGIRTGRANAGMFSKIVVDYYGAPTPLQQLASFNIPEARSVLISP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +DK +A++E+ + +S+LG+NP +G +RI +P TEERR VK+A AE ++I+VR Sbjct: 70 FDKSSMAAIEKALRDSDLGVNPSNDGNAIRIVLPALTEERRRDYVKLAKTKAEDARITVR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 NIRR D L K K G+A ED V+ E +++ +T + +D K+ E++ Sbjct: 130 NIRRKAKDVLDKLVKDGEAGEDEVSRAEKELEALTKRHVDQVDQLLAGKESELLE 184 >gi|222824490|ref|YP_002576064.1| ribosome releasing factor [Campylobacter lari RM2100] gi|254809499|sp|B9KE24|RRF_CAMLR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|222539711|gb|ACM64812.1| ribosome releasing factor [Campylobacter lari RM2100] Length = 185 Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 66/184 (35%), Positives = 109/184 (59%), Gaps = 2/184 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ Q K + ++ LKKD T+RTG+V+ ++LD V V+ YGS PLNQVA V Sbjct: 2 LNEIYTKQ--KQQSDKSLEALKKDFTTIRTGKVNINILDHVHVDYYGSQTPLNQVATVLA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + + ++ W+K M+ ++E I +N+G+NP +G+ +++ P T E+R K A A Sbjct: 60 TDASTISITPWEKPMLKTIESAIAAANIGVNPNNDGESVKLFFPPMTREQREENAKSAKA 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 EK+K+++RNIR+D D +KK K SED +++QK TD+ ID + K+ Sbjct: 120 MGEKAKVAIRNIRKDANDAVKKLEKDKAISEDEAKKAYDEVQKQTDNYTTKIDELVKNKE 179 Query: 181 KEIM 184 E++ Sbjct: 180 AELL 183 >gi|318041138|ref|ZP_07973094.1| ribosome recycling factor [Synechococcus sp. CB0101] Length = 179 Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 62/172 (36%), Positives = 105/172 (61%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M ++ ++ T+RTGR + S+LD ++VE YG+ PL +A ++ + + + +D Sbjct: 7 MRKSVDSTQRTFNTIRTGRANASLLDKIQVEYYGADTPLKSLATISTPDSSTIQLQPFDA 66 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 ++ +E+ I S+LGL +G+V+RI +P TE+RR L K+A YAE+ K+++RNIR Sbjct: 67 SSLSLIEKAISMSDLGLTCNNDGKVIRINIPPLTEDRRKDLCKLAAKYAEEGKVALRNIR 126 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 RD +D +KK K G+ SED ++ +QK+TD I I+ EK+ +I+ Sbjct: 127 RDAIDKVKKQEKEGEFSEDQSRDEQDKVQKLTDKFIAEIEKLLAEKEADILK 178 >gi|298373170|ref|ZP_06983160.1| ribosome recycling factor [Bacteroidetes oral taxon 274 str. F0058] gi|298276074|gb|EFI17625.1| ribosome recycling factor [Bacteroidetes oral taxon 274 str. F0058] Length = 188 Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 65/171 (38%), Positives = 106/171 (61%), Gaps = 1/171 (0%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M T+SFL + +R G+ + +LD +KV+ YG+ PL+ VA +T + + + + W+K Sbjct: 17 MEATVSFLDDALAHIRAGKANVKILDGIKVDYYGTLTPLSSVATITTPDAKTISIQPWEK 76 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 ++ +E+ I S++G+ P G+V+R+ +P TEERR LVK A + E++KIS+RN R Sbjct: 77 NLIPVIEKAILASDVGITPANNGEVVRLSIPPLTEERRKQLVKQAGSAVEEAKISIRNAR 136 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 R+ ++ LKK K+G ED+ E ++QK D IK ++ F K+KEIM Sbjct: 137 REAIERLKKEIKNG-MPEDVEKDAEAEVQKQHDKHIKRLEELFAAKEKEIM 186 >gi|260435842|ref|ZP_05789812.1| ribosome recycling factor [Synechococcus sp. WH 8109] gi|260413716|gb|EEX07012.1| ribosome recycling factor [Synechococcus sp. WH 8109] Length = 182 Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 106/177 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+++ M ++ +++ T+RTGR + S+LD + VE YG+ PL +A ++ + + + Sbjct: 4 QDLEASMRKSVEATQRNFNTIRTGRANSSLLDRISVEYYGADTPLKSLATLSTPDSQTIQ 63 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +D +AS+E+ I S LG P +G+++RI VP TEERR K+A YAE+ K+ Sbjct: 64 IQPFDISALASIEKAIAMSELGFTPNNDGKIIRINVPPLTEERRKEFCKLASKYAEEGKV 123 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++RN+RRD +D +KK K G+ SED ++ +QK D I ++ K+ +++ Sbjct: 124 ALRNLRRDAIDKIKKQEKEGEFSEDQSRDEQDGVQKTLDKFIAELEQHLATKEADVL 180 >gi|325067054|ref|ZP_08125727.1| ribosome recycling factor [Actinomyces oris K20] gi|326771757|ref|ZP_08231042.1| ribosome recycling factor [Actinomyces viscosus C505] gi|326637890|gb|EGE38791.1| ribosome recycling factor [Actinomyces viscosus C505] Length = 185 Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 63/175 (36%), Positives = 107/175 (61%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 +D+M + K ++ T+RTGR +PSM + + V+ YG+ PL Q+A++T+ E R ++VS Sbjct: 10 EDKMDKALQAAKSELATIRTGRANPSMFNGIVVDYYGAPTPLQQLASLTIPEARTVLVSP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +D+ + + I ES+LG+NP +G V+R+ +P TEERR VK+A + AE S++ VR Sbjct: 70 FDRSAMKDIVTAIRESDLGVNPTDDGTVIRVTLPALTEERRKDYVKLARSRAEDSRVQVR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 IR L+ +K G+A ED V E+++ +T ++ ID+ K+ E++ Sbjct: 130 GIRGKAKKELEAIKKDGEAGEDDVKRAEHELDGLTKRFVEQIDAALSAKEAELLE 184 >gi|238063326|ref|ZP_04608035.1| ribosome-recycling factor [Micromonospora sp. ATCC 39149] gi|237885137|gb|EEP73965.1| ribosome-recycling factor [Micromonospora sp. ATCC 39149] Length = 185 Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 64/179 (35%), Positives = 106/179 (59%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M I K++ +RTGR + +M V ++ YG+ PL Q+A++ V EPRM+ Sbjct: 6 LLEAEEKMERAIEHAKEEFGAIRTGRANAAMFSKVIIDYYGTPTPLPQMASIGVPEPRMV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D + ++ER I +S+L +NP EG LRI +P+ TEERR ++KVA E++K Sbjct: 66 IIKPYDNSQINAMERAIRDSDLSVNPNNEGNQLRILLPQMTEERRREMIKVARHKGEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRNIRR G + L + K G+ ED E D+ +T + ID + K+ E++ Sbjct: 126 VAVRNIRRKGKEELDRLVKDGEVGEDEGRRAEKDLDDLTQKFVATIDELVKHKESELLE 184 >gi|86153726|ref|ZP_01071929.1| ribosome recycling factor [Campylobacter jejuni subsp. jejuni HB93-13] gi|85842687|gb|EAQ59899.1| ribosome recycling factor [Campylobacter jejuni subsp. jejuni HB93-13] Length = 185 Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 66/184 (35%), Positives = 111/184 (60%), Gaps = 2/184 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ + Q K + ++ LKKD TLRTG+V+ +LD + V+ YG+ PLNQVA V Sbjct: 2 LNEIFNKQ--KTQSEKSLEALKKDFTTLRTGKVNIHILDHITVDYYGTQTPLNQVATVLA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + + ++ W+K ++ ++E I +N+G+NP +G+ +++ P T E+R VK A A Sbjct: 60 SDASTISITPWEKPLLKTIESAIAAANIGVNPNNDGESVKLFFPPMTREQREENVKQAKA 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 EK+K+S+RNIR+D D +KK K SED +++QK+TD+ ID + K+ Sbjct: 120 MGEKAKVSIRNIRKDANDAVKKLEKDKAISEDEAKKAYDEVQKLTDAYTIKIDESVKSKE 179 Query: 181 KEIM 184 E++ Sbjct: 180 SELL 183 >gi|320532043|ref|ZP_08032932.1| ribosome recycling factor [Actinomyces sp. oral taxon 171 str. F0337] gi|320135743|gb|EFW27802.1| ribosome recycling factor [Actinomyces sp. oral taxon 171 str. F0337] Length = 185 Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 63/175 (36%), Positives = 107/175 (61%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 +D+M + K ++ T+RTGR +PSM + + V+ YG+ PL Q+A++T+ E R ++VS Sbjct: 10 EDKMDKALQAAKSELATIRTGRANPSMFNGIVVDYYGAPTPLQQLASLTIPEARTVLVSP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +D+ + + I ES+LG+NP +G V+R+ +P TEERR VK+A + AE S++ VR Sbjct: 70 FDRSAMKDIVTAIRESDLGVNPTDDGTVIRVTLPALTEERRKDYVKLARSRAEDSRVQVR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 IR L+ +K G+A ED V E+++ +T ++ ID+ K+ E++ Sbjct: 130 GIRGKAKKELEAIKKDGEAGEDDVKRAEHELDGLTKRFVEQIDAALSAKESELLE 184 >gi|283955346|ref|ZP_06372845.1| ribosome recycling factor [Campylobacter jejuni subsp. jejuni 414] gi|283793106|gb|EFC31876.1| ribosome recycling factor [Campylobacter jejuni subsp. jejuni 414] Length = 185 Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 65/184 (35%), Positives = 110/184 (59%), Gaps = 2/184 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ + Q K + ++ LKKD TLRTG+V+ +LD + V+ YG+ PLNQVA V Sbjct: 2 LNEIFNKQ--KTQSEKSLEALKKDFTTLRTGKVNTHILDHITVDYYGTQTPLNQVATVLA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + + ++ W+K ++ ++E I +N+G+NP +G+ +++ P T E+R VK A Sbjct: 60 SDASTISITPWEKPLLKTIESAIAAANIGVNPNNDGESVKLFFPPMTREQREENVKQVKA 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 EK+K+S+RNIR+D D +KK K SED +++QK+TD+ ID + K+ Sbjct: 120 MGEKAKVSIRNIRKDANDAVKKLEKDKTISEDEAKKAYDEVQKLTDAYTAKIDESVKSKE 179 Query: 181 KEIM 184 E++ Sbjct: 180 SELL 183 >gi|296395044|ref|YP_003659928.1| ribosome recycling factor [Segniliparus rotundus DSM 44985] gi|296182191|gb|ADG99097.1| ribosome recycling factor [Segniliparus rotundus DSM 44985] Length = 185 Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 61/175 (34%), Positives = 105/175 (60%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 ++RM + K D +RTGR + S+ V V+ YG+ P+ Q+++V +PR++V+ Sbjct: 10 EERMELAVEVAKDDFAAIRTGRATASLFAKVVVDYYGTPTPIPQISSVQTPDPRLVVIKP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 ++ + ++E I +S+LGLNP +GQV+R+ +P TEERR K A AE+++++VR Sbjct: 70 YEAGQLRAIEEAIQKSDLGLNPSNDGQVVRVAIPALTEERRKEFAKQARGKAEEARVTVR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 N+RR + L K K G+ ED VA E ++ K+T + ID ++K+ E++ Sbjct: 130 NVRRKANEQLGKLSKEGQTGEDDVARAEKELDKLTARFVGVIDELVKKKEAELLE 184 >gi|302542189|ref|ZP_07294531.1| ribosome recycling factor [Streptomyces hygroscopicus ATCC 53653] gi|302459807|gb|EFL22900.1| ribosome recycling factor [Streptomyces himastatinicus ATCC 53653] Length = 185 Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 59/173 (34%), Positives = 103/173 (59%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M + K+D +RTGR P+M + + + YG+ P+NQ+A+ +V EPRM V++ +D Sbjct: 12 KMEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMAVITPFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K + ++E+ I +S+LG+NP +G ++R+ PE TE+RR +KVA E +KIS+R+I Sbjct: 72 KSALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEQRRKEFIKVAKGKGEDAKISIRSI 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 RR + + K K G+ ED E ++ +T + +D + K+ E++ Sbjct: 132 RRKAKESIDKLIKDGEVGEDEGRRAEKELDDLTAKYVAQVDELLKHKEAELLE 184 >gi|186686172|ref|YP_001869368.1| ribosome recycling factor [Nostoc punctiforme PCC 73102] gi|238691203|sp|B2IVW4|RRF_NOSP7 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|186468624|gb|ACC84425.1| ribosome recycling factor [Nostoc punctiforme PCC 73102] Length = 182 Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 59/177 (33%), Positives = 110/177 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + K +M ++ ++ T+RTGR + S+LD V V+ YGS PL +AN++ + + Sbjct: 3 LADAKSKMQSSVESTQRAFNTIRTGRANASLLDKVLVDYYGSPTPLKSLANISTPDASTI 62 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +++ + +E+ I S++GL P +G V+R+ +P T +RR VK+A YAE+ + Sbjct: 63 LIQPYERNTLNIIEKAISLSDVGLTPSNDGSVIRLNIPPLTSDRRKEFVKMATKYAEEGR 122 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +++RNIRRD +D ++K K+ + S+D ++++QK+T+ ID+ EK+K+I Sbjct: 123 VAIRNIRRDAIDSIRKQEKASEISKDESKDQQDNLQKLTNEYTSRIDALLAEKEKDI 179 >gi|282890409|ref|ZP_06298937.1| ribosome recycling factor [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499791|gb|EFB42082.1| ribosome recycling factor [Parachlamydia acanthamoebae str. Hall's coccus] Length = 183 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 61/177 (34%), Positives = 104/177 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K++M + LK D+ ++RTG+ +P MLD + VE YGS + L +A + E R L Sbjct: 4 VKQTKEKMEAALEHLKNDLNSIRTGQANPGMLDGITVEVYGSQMRLRDIATINSPEARQL 63 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +D ++ + I +NLG PIV+G +RI +P E R + K+ H E++K Sbjct: 64 LITPFDAGTAGAIGKSIERANLGFMPIVDGNAVRIKIPPMDESLRKEMAKLCHKKQEEAK 123 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +++RN RRD D ++K + +G+ ED + E +IQ++TD K D +K+KEI Sbjct: 124 VAIRNHRRDANDLVRKQKAAGELPEDQMKKQEKEIQELTDKYCKLADEIAAKKEKEI 180 >gi|212551111|ref|YP_002309428.1| ribosome recycling factor [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549349|dbj|BAG84017.1| ribosome recycling factor [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 184 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 65/172 (37%), Positives = 107/172 (62%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M T++ L++ + +R G+ S +LD +K+E YG+ VPL+ VAN+++L+ + + + W+ Sbjct: 11 KMLHTLTHLEEVLSRIRAGKASTHILDGIKIEYYGNVVPLSNVANISILDAKTITILAWE 70 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K M+ +E+ I +S++G+ P G+++R+ +P TEERR LVK + EK+K+ +RNI Sbjct: 71 KAMMKPIEKAIQDSDIGITPENNGELVRLNIPPLTEERRKQLVKQSKGEVEKAKVGIRNI 130 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RR+ D +KK K G SED E QK+ D +K ID K K+IM Sbjct: 131 RRETNDMIKKFVKEGIFSEDEGKKTELATQKLHDKFLKKIDKVLIAKVKDIM 182 >gi|329947861|ref|ZP_08294793.1| ribosome recycling factor [Actinomyces sp. oral taxon 170 str. F0386] gi|328523485|gb|EGF50583.1| ribosome recycling factor [Actinomyces sp. oral taxon 170 str. F0386] Length = 185 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 62/175 (35%), Positives = 107/175 (61%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 +D+M + K ++ T+RTGR +PSM + + V+ YG+ PL Q+A++T+ E R ++VS Sbjct: 10 EDKMDKALQAAKSELATIRTGRANPSMFNGIVVDYYGAPTPLQQLASLTIPEARTVLVSP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +D+ + + I ES+LG+NP +G V+R+ +P TEERR VK+A + AE S++ VR Sbjct: 70 FDRSAMKDIVTAIRESDLGVNPTDDGTVIRVTLPALTEERRKDYVKLARSRAEDSRVQVR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 IR L+ +K G+A ED V E+++ +T ++ +D+ K+ E++ Sbjct: 130 GIRAKAKKELEAIKKDGEAGEDDVKRAEHELDGLTKRFVEQVDAALSAKESELLE 184 >gi|75700577|gb|ABA20253.1| ribosome recycling factor [Anabaena variabilis ATCC 29413] Length = 173 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 61/170 (35%), Positives = 103/170 (60%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M T+ ++ T+RTGR + S+LD V V+ YGS PL +AN++ + + + +DK Sbjct: 1 MQHTVEATQRAFNTIRTGRANASLLDKVLVDYYGSPTPLKSLANISTPDATTIQIQPYDK 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 + +E+ I S++GL P +G +R+ +P T +RR LVK+A YAE+ ++++RNIR Sbjct: 61 TSLNIIEKAISLSDVGLTPSNDGSAIRLNIPPLTSDRRKELVKLAAKYAEEGRVAIRNIR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 RD +D ++K K+ + SED ++ +QK+T+ ID EK+K+I Sbjct: 121 RDAIDSIRKQEKNAEVSEDEAKDQQDKLQKLTNKYTARIDELLAEKEKDI 170 >gi|184201268|ref|YP_001855475.1| ribosome recycling factor [Kocuria rhizophila DC2201] gi|238689218|sp|B2GKT3|RRF_KOCRD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|183581498|dbj|BAG29969.1| ribosome recycling factor [Kocuria rhizophila DC2201] Length = 185 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 61/178 (34%), Positives = 101/178 (56%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + RMG + K D T+RTGR +P++ + V YG+ PL Q+A+ E R L Sbjct: 6 LSDATTRMGKAVDAAKTDFSTVRTGRANPALFSSLLVAYYGTPTPLQQLASFQTPEARTL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +D+ + +E+ + +S++G NP +G V+R+ +PE TEERR VK+ H AE ++ Sbjct: 66 LITPYDRSALNDIEKALRDSDIGANPANDGNVIRVVMPELTEERRKEYVKIVHGKAEDAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +SVRN+RR + ++K K G ED E D+ T I +D + K+ E++ Sbjct: 126 VSVRNVRRHAKEAIEKLVKDGDVGEDDGKRGEKDLDAATKKHIDQVDELLKNKEAELL 183 >gi|159903064|ref|YP_001550408.1| ribosome recycling factor [Prochlorococcus marinus str. MIT 9211] gi|226749934|sp|A9BEE4|RRF_PROM4 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|159888240|gb|ABX08454.1| Ribosome recycling factor [Prochlorococcus marinus str. MIT 9211] Length = 182 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 60/171 (35%), Positives = 106/171 (61%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M ++ +++ T+RTGR + S+LD + VE YG+ PL +A ++ + + + + +D Sbjct: 10 MRKSVEAAQRNFNTIRTGRANTSLLDRLTVEYYGADTPLKSLATISTPDSQTISIQPFDL 69 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 + +E+ I S+LG P +G+++RI +P TEERR K+A YAE+ K+++RNIR Sbjct: 70 SSLVLIEKSIAMSDLGFTPNNDGKIIRINIPPLTEERRKEFCKLASKYAEEGKVALRNIR 129 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RD ++ +KKS K + SED ++++QK+TD I I+ +K++EI+ Sbjct: 130 RDAIERIKKSEKESEISEDQSRDEQDNVQKLTDRFITEIEKNLSDKEQEIL 180 >gi|320527474|ref|ZP_08028655.1| ribosome recycling factor [Solobacterium moorei F0204] gi|320132187|gb|EFW24736.1| ribosome recycling factor [Solobacterium moorei F0204] Length = 182 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 67/172 (38%), Positives = 101/172 (58%), Gaps = 3/172 (1%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M I L+ ++ T+RTG + MLD V+V+ YGS PLNQ+A ++V E R LV+ +D Sbjct: 12 KMDKVIDHLQSELNTVRTGAANVKMLDRVEVDYYGSPTPLNQIAALSVSEGRTLVIKPYD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + ++E +E++LG+ P +G V+R+ VP+ T E R + K E+ KI +RNI Sbjct: 72 PSSLKAIEHACNEADLGIAPSNDGTVIRLTVPQLTGETRKEMTKKVDKMGEECKIQIRNI 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD M +KK + ED+ EN+IQK+TD IK ID K E++ Sbjct: 132 RRDAMSVVKKDK---TMDEDIQKDCENEIQKLTDKYIKKIDDLAAAKSAEVL 180 >gi|330959202|gb|EGH59462.1| ribosome recycling factor [Pseudomonas syringae pv. maculicola str. ES4326] Length = 185 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 67/172 (38%), Positives = 102/172 (59%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM ++ L +RTG+ PS+L V V YG+ PL+QVANVTV + R L V ++ Sbjct: 12 RMQKSLESLAHAFTRIRTGKAHPSILGGVMVPYYGADTPLSQVANVTVKDSRTLQVVAFE 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + M+A+V++ I S LG NP G++L I +P TEE R K A AE ++++VRNI Sbjct: 72 RNMLAAVDKAIQSSGLGFNPTNLGELLLISMPALTEETRKGFTKQARDAAEDARVAVRNI 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD + LK K + SED +D+QK+TD + I++ ++K+ ++M Sbjct: 132 RRDALSQLKDLVKDKEISEDEERRAADDVQKLTDKFVAEIEAAVKQKEADLM 183 >gi|149374434|ref|ZP_01892208.1| ribosome recycling factor [Marinobacter algicola DG893] gi|149361137|gb|EDM49587.1| ribosome recycling factor [Marinobacter algicola DG893] Length = 194 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 80/190 (42%), Positives = 109/190 (57%), Gaps = 7/190 (3%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTL-------RTGRVSPSMLDLVKVEAYGSHVPLNQ 54 N+ D I D D +KK + +L RTGR PS+LD V V+ YG PL Q Sbjct: 3 NESEDAAVIDDIKADAEKKMKKSLESLSWAFNKIRTGRAHPSILDSVTVDYYGQETPLKQ 62 Query: 55 VANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLAL 114 VA+V V + R L VS W+K ++ +E+ I S+LGLNP G+V+RIP+P TEE R + Sbjct: 63 VASVNVEDNRTLAVSPWEKPLLPKIEKAIMMSDLGLNPSNNGEVIRIPMPMLTEETRKEM 122 Query: 115 VKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDS 174 VK A A AE K+SVRN RRD LK+ K +ED E +IQK+TD I I+ Sbjct: 123 VKQARADAEHGKVSVRNARRDANSTLKELLKEKDINEDEERYGEEEIQKLTDRYIAEIEK 182 Query: 175 FFEEKKKEIM 184 + K++++M Sbjct: 183 QLKAKEEDLM 192 >gi|153952376|ref|YP_001397463.1| ribosome recycling factor [Campylobacter jejuni subsp. doylei 269.97] gi|166230775|sp|A7H1T3|RRF_CAMJD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|152939822|gb|ABS44563.1| ribosome recycling factor [Campylobacter jejuni subsp. doylei 269.97] Length = 185 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 65/184 (35%), Positives = 110/184 (59%), Gaps = 2/184 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ + Q K + ++ LKKD TLRTG+++ +LD + V+ YG+ PLNQVA V Sbjct: 2 LNEIFNKQ--KTQSEKSLEALKKDFTTLRTGKINTHILDHITVDYYGNQTPLNQVATVLA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + + ++ W+K ++ ++E I +N+G+NP +G+ +++ P T E+R VK A A Sbjct: 60 SDASTISITPWEKPLLKTIESAIAAANIGVNPNNDGESVKLFFPPMTREQREENVKQAKA 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 EK+K+S+RNIR+D D +KK K SED +++QK+TD ID + K+ Sbjct: 120 MGEKAKVSIRNIRKDANDAVKKLEKDKAISEDEAKKAYDEVQKLTDVYTTKIDESVKSKE 179 Query: 181 KEIM 184 E++ Sbjct: 180 SELL 183 >gi|326490946|dbj|BAJ90140.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326512904|dbj|BAK03359.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 266 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 63/176 (35%), Positives = 107/176 (60%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + K++M I ++ + T+RTGR +PSMLD ++VE YG+ V L +A V + L+ Sbjct: 88 EQAKEKMEKAIETVQSNFNTVRTGRANPSMLDRIEVEYYGTPVNLKTIAQVNTPDATSLL 147 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +DK + +E+ I +N+G+ P +G+V+R+ VP T +RR + K +E+ K+ Sbjct: 148 IQPYDKSCLKLIEKAIVAANIGVTPSNDGEVIRVTVPPLTSDRRKEMTKTVAKLSEEGKV 207 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 ++RNIRRD + K K K SED V L D+QKITD +K +++ ++K++E+ Sbjct: 208 AIRNIRRDAIKAYDKLEKEKKLSEDNVKDLSADLQKITDEYMKKVEAIQKQKEQEL 263 >gi|239917205|ref|YP_002956763.1| ribosome recycling factor [Micrococcus luteus NCTC 2665] gi|281414322|ref|ZP_06246064.1| ribosome recycling factor [Micrococcus luteus NCTC 2665] gi|259494549|sp|C5C9Q7|RRF_MICLC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|239838412|gb|ACS30209.1| ribosome recycling factor [Micrococcus luteus NCTC 2665] Length = 185 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 64/179 (35%), Positives = 111/179 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 LQ+ +++M TI ++D +++RTGR +P + V V+ YGS PL Q+A+ T + R L Sbjct: 6 LQSAEEQMDRTIEATREDFVSVRTGRANPGLYSKVMVDYYGSFTPLQQLASFTTTDARTL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +D+ + ++E+ + ES +G NP +G+V+RI +PE T ERR VK+ + AE+ K Sbjct: 66 LITPFDQSALRNIEKALSESEVGANPSNDGKVIRIVMPELTAERRKEYVKLVKSKAEEHK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ISVRN RR + + K+ K G+ ED A E ++ +T ++ ID + K++E++ Sbjct: 126 ISVRNARRKAKEAMDKAVKDGEVGEDEGARGEKELDALTKRHVELIDEMAKNKEQELLE 184 >gi|160902092|ref|YP_001567673.1| ribosome recycling factor [Petrotoga mobilis SJ95] gi|190360246|sp|A9BJD6|RRF_PETMO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|160359736|gb|ABX31350.1| ribosome recycling factor [Petrotoga mobilis SJ95] Length = 187 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 62/174 (35%), Positives = 104/174 (59%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 ++M T+ + ++ +RTGR + ++ + +KV+ YG P+NQVA ++V E R +V++ W Sbjct: 13 EKMKKTLEHFEDELKKVRTGRPTTAIFEDIKVDYYGMPTPINQVATLSVGEERTVVITPW 72 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 DK+M+ +E+ I+ SN G + I +G V+R+ P T E R LVK E++K+++RN Sbjct: 73 DKKMLEPIEKAINSSNFGFHAINDGNVVRVSFPNPTIEERRKLVKAIKEMLEETKVALRN 132 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 IRRD + +K+ + G SED E +IQ+I + F+ K+KEIM Sbjct: 133 IRRDDIKKVKEIKNEGSISEDEAKKFEEEIQEILKENEDEAEKIFQRKEKEIME 186 >gi|86742260|ref|YP_482660.1| ribosome recycling factor [Frankia sp. CcI3] gi|123723539|sp|Q2J711|RRF_FRASC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|86569122|gb|ABD12931.1| ribosome recycling factor [Frankia sp. CcI3] Length = 185 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 109/178 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M +S ++D +RTGR++P++ + V+ YG+ P+ Q+A+ + EPRM+ Sbjct: 6 LLEAEEKMEKAVSVAREDFANIRTGRITPAVFSKILVDYYGAPTPVQQLASFHIPEPRMV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK + ++E+ + +S+LG+NP +G ++R PE +E+RR LVKVA AE+++ Sbjct: 66 IITPYDKSSLGAIEKAVRDSDLGVNPSNDGTIIRCVFPELSEQRRRDLVKVARTKAEEAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +S+RN+RR D + + + G A ED E D+ + T + +D K+ +++ Sbjct: 126 VSIRNVRRHAKDTIDRIVRDGDAGEDEGRRGEKDLDEATHRYVGQVDELLRLKESDLL 183 >gi|76789417|ref|YP_328503.1| ribosome recycling factor [Chlamydia trachomatis A/HAR-13] gi|237803107|ref|YP_002888301.1| ribosome recycling factor [Chlamydia trachomatis B/Jali20/OT] gi|123606674|sp|Q3KL17|RRF_CHLTA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|76167947|gb|AAX50955.1| ribosome recycling factor (RRF) [Chlamydia trachomatis A/HAR-13] gi|231274341|emb|CAX11136.1| ribosome recycling factor [Chlamydia trachomatis B/Jali20/OT] Length = 179 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 64/177 (36%), Positives = 110/177 (62%), Gaps = 3/177 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + + M ++F +K+ +TG+ P++++ V +E YG+ + L+ +A+++V + R L Sbjct: 3 LASAEKEMAGVLTFFQKETRGFKTGKAHPALVETVTIEVYGTTMRLSDIASISVSDMRQL 62 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +D V+++ +GI +NL L PIVEG +RI VPE TEE R ++K +E++K Sbjct: 63 LISPYDAGTVSAISKGILAANLNLQPIVEGATVRINVPEPTEEYRREVIKQLKRKSEEAK 122 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +++RNIRR D LK K +ED V SLE IQ++TD K I+ ++K+ E+ Sbjct: 123 VAIRNIRRTFNDRLK---KDDSLTEDAVKSLEKKIQELTDKFCKQIEELAKQKEAEL 176 >gi|309389219|gb|ADO77099.1| ribosome recycling factor [Halanaerobium praevalens DSM 2228] Length = 185 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 70/174 (40%), Positives = 107/174 (61%), Gaps = 2/174 (1%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M + K+D+ T+RTGR PS++ +K YG P+ Q+A V E R +V+ WD Sbjct: 12 KMEKGLEKTKEDLNTIRTGRARPSLVQNIKANNYGVATPIQQMAKVFAPEARQIVIEPWD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K + ++E+ I + NLGL P +G V+RI +P+ TEERR LVK+ H AEK +I++R I Sbjct: 72 KNNIETIEKAIMQENLGLTPSNDGSVIRINIPQLTEERRKELVKILHEKAEKGRIAIRAI 131 Query: 133 RRDGMDHLKKSRKSGKASED-MVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 RR+ + L+ G+ SED M LEN +Q++TD I +D ++K++EIM Sbjct: 132 RREANEELELLEDEGEISEDNMHRGLEN-VQELTDEYIDKLDQIVKKKEEEIME 184 >gi|119513540|ref|ZP_01632559.1| ribosome releasing factor [Nodularia spumigena CCY9414] gi|119461805|gb|EAW42823.1| ribosome releasing factor [Nodularia spumigena CCY9414] Length = 182 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 62/170 (36%), Positives = 103/170 (60%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M T+ ++ T+RTGR + S+LD V V+ YGS PL +AN++ + +++ +DK Sbjct: 10 MQKTVEATQRAFNTIRTGRANASLLDKVSVDYYGSPTPLKSLANISTPDASTILIQPYDK 69 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 + VE+ I S++GL P +G V+R+ +P T +RR VK+A YAE+ ++++RNIR Sbjct: 70 GSLNVVEKAISLSDVGLTPSNDGSVIRLNIPPLTSDRRKEFVKMASKYAEEGRVAIRNIR 129 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 RD D ++K K+ + SED ++ +QK+T+ ID EK+K+I Sbjct: 130 RDVQDTIRKEEKASEISEDESKDQQDQLQKLTNKYTARIDDLLAEKEKDI 179 >gi|153820605|ref|ZP_01973272.1| ribosome recycling factor [Vibrio cholerae NCTC 8457] gi|126508852|gb|EAZ71446.1| ribosome recycling factor [Vibrio cholerae NCTC 8457] Length = 148 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 59/134 (44%), Positives = 89/134 (66%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK + +RTGR PS+L + V+ YG+ PLNQVANV + R L Sbjct: 7 KDAQERMEKSVEALKNGLSKIRTGRAHPSLLTGISVDYYGAPTPLNQVANVIAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+E+ VE+ I S+LGLNP+ G ++R+P+P TEERR LVK+ AE ++ Sbjct: 67 ITVFDRELTQKVEKAILMSDLGLNPMSAGTIIRVPLPPLTEERRRDLVKIVRGEAEGGRV 126 Query: 128 SVRNIRRDGMDHLK 141 +VRNIRRD + LK Sbjct: 127 AVRNIRRDANNDLK 140 >gi|289706653|ref|ZP_06503001.1| ribosome recycling factor [Micrococcus luteus SK58] gi|289556573|gb|EFD49916.1| ribosome recycling factor [Micrococcus luteus SK58] Length = 185 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 64/179 (35%), Positives = 110/179 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 LQ+ +++M TI ++D ++RTGR +P + V V+ YGS PL Q+A+ T + R L Sbjct: 6 LQSAEEQMDRTIEATREDFASVRTGRANPGLYSKVMVDYYGSFTPLQQLASFTTTDARTL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +D+ + ++E+ + ES +G NP +G+V+RI +PE T ERR VK+ + AE+ K Sbjct: 66 LITPFDQSALRNIEKALSESEVGANPSNDGKVIRIVMPELTAERRKEYVKLVKSKAEEHK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ISVRN RR + + K+ K G+ ED A E ++ +T ++ ID + K++E++ Sbjct: 126 ISVRNARRKAKEAMDKAVKDGEVGEDEGARGEKELDALTKRHVELIDEMAKNKEQELLE 184 >gi|300778312|ref|ZP_07088170.1| ribosome recycling factor [Chryseobacterium gleum ATCC 35910] gi|300503822|gb|EFK34962.1| ribosome recycling factor [Chryseobacterium gleum ATCC 35910] Length = 184 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 68/178 (38%), Positives = 103/178 (57%), Gaps = 3/178 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+++K M + L +R GR S +M+ V VE YG+ P+NQVANV++ + + Sbjct: 8 LESVKQDMDAAVKHLDHAFQRIRAGRASTTMVQDVMVEYYGAMTPINQVANVSIPDAMTI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WD+ + ++E+ I SNLG P G+ + + VP TEERR L K A A AE++K Sbjct: 68 SIQPWDRTAINAIEKAIINSNLGFAPSNNGENIILNVPPLTEERRKELAKQAKAEAEQTK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++VRN R+DG+ LK K SED++ +E +IQ TD +K D + K+ EIM Sbjct: 128 VTVRNARQDGLKELK---KLDGVSEDVIKGVEEEIQTYTDKYVKLCDEHLKTKEAEIM 182 >gi|183601689|ref|ZP_02963059.1| ribosome recycling factor [Bifidobacterium animalis subsp. lactis HN019] gi|241190812|ref|YP_002968206.1| ribosome recycling factor [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196218|ref|YP_002969773.1| ribosome recycling factor [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219295|gb|EDT89936.1| ribosome recycling factor [Bifidobacterium animalis subsp. lactis HN019] gi|240249204|gb|ACS46144.1| ribosome recycling factor [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250772|gb|ACS47711.1| ribosome recycling factor [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793801|gb|ADG33336.1| ribosome recycling factor [Bifidobacterium animalis subsp. lactis V9] Length = 173 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 64/172 (37%), Positives = 103/172 (59%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M ++ K++ +RTGR +P++L+ + VE YG+ PL VA + V EPR L V+ +D Sbjct: 1 MKKSVESTKENFAGIRTGRANPALLNGIVVEYYGAPTPLKHVATIGVPEPRTLSVTPFDP 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 +VE+ + +S+LG +P G + + +PE TE+RR VK+A + AE K++VRNIR Sbjct: 61 SQANAVEKALRDSDLGASPRRNGSAILLTMPELTEDRRKEYVKLAKSKAEDGKVAVRNIR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 R + + K+ K G+ ED L ++ K+T +T +D+ E K+KEIM Sbjct: 121 RKSKEAIDKAVKDGEMGEDEGDRLLKELDKVTKATTDELDALLEAKQKEIME 172 >gi|288818005|ref|YP_003432352.1| ribosome recycling factor [Hydrogenobacter thermophilus TK-6] gi|288787404|dbj|BAI69151.1| ribosome recycling factor [Hydrogenobacter thermophilus TK-6] gi|308751605|gb|ADO45088.1| ribosome recycling factor [Hydrogenobacter thermophilus TK-6] Length = 181 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 68/173 (39%), Positives = 107/173 (61%), Gaps = 4/173 (2%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M ++ K ++ LRTGR S ++++ +KVE YGS VP+ Q+ +++V E +V+ +WD Sbjct: 13 MKKAVNHFKNEIGGLRTGRASTALVEELKVEYYGSKVPIKQLGSISVPEANQIVLQLWDS 72 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 V +VE+ I E LGLNP +G LRI +P TEERR LV++ H AE++++++RNIR Sbjct: 73 NAVPNVEKVIMEE-LGLNPQRQGNTLRIILPPLTEERRKELVRLLHKMAEEARVAIRNIR 131 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RD + +++ SED + + +QK+TD I I+ E K+KEIM Sbjct: 132 RDAKEMIEELE---GVSEDEIKRALDRLQKLTDRYIDQINHLVETKEKEIMEL 181 >gi|29839811|ref|NP_828917.1| ribosome recycling factor [Chlamydophila caviae GPIC] gi|33301547|sp|Q824U6|RRF_CHLCV RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|29834158|gb|AAP04795.1| ribosome recycling factor [Chlamydophila caviae GPIC] Length = 180 Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 62/177 (35%), Positives = 111/177 (62%), Gaps = 3/177 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + + +M + F K++ + RTG+ +P++++ V V+ YG+ + L+ +A+++V + R L Sbjct: 4 LTDTEKKMAAALEFFHKEVRSFRTGKANPALVETVTVDVYGTTMRLSDLASISVADTRQL 63 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+S +D V+++ +GI +NL L P VEG ++RI VPE T E R ++K +E++K Sbjct: 64 VISPYDANNVSAISKGIIAANLNLQPDVEGTIVRIKVPEPTAEYRNEVIKQLRRKSEEAK 123 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +++RNIRR+ D LK K +ED V +E +Q++TD K ID ++K+ E+ Sbjct: 124 VAIRNIRRESNDKLK---KDSDLTEDAVKGMEKKVQELTDKFCKQIDEITKQKEAEL 177 >gi|302187901|ref|ZP_07264574.1| ribosome recycling factor [Pseudomonas syringae pv. syringae 642] Length = 185 Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 67/177 (37%), Positives = 105/177 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM ++ L +RTG+ PS+L V V YG+ PL+QVANVTV + R L Sbjct: 7 KDAQTRMQKSLESLTHAFTRIRTGKAHPSILGGVMVPYYGADTPLSQVANVTVKDSRTLQ 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +++ M+A+V++ I S LG NP G++L I +P TEE R K A AE +++ Sbjct: 67 VVAFERNMLAAVDKAIQSSGLGFNPTNLGELLLISMPALTEETRKGFTKQARDAAEDARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +VRNIRRD + LK K + SED +D+QK+TD + +I+ ++K+ ++M Sbjct: 127 AVRNIRRDALSQLKDLVKEKEISEDEERRAADDVQKLTDKFVADIEVAVKQKEADLM 183 >gi|15605410|ref|NP_220196.1| ribosome recycling factor [Chlamydia trachomatis D/UW-3/CX] gi|255311504|ref|ZP_05354074.1| ribosome recycling factor [Chlamydia trachomatis 6276] gi|255317806|ref|ZP_05359052.1| ribosome recycling factor [Chlamydia trachomatis 6276s] gi|6831537|sp|O84684|RRF_CHLTR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|3329129|gb|AAC68272.1| Ribosome Releasing Factor [Chlamydia trachomatis D/UW-3/CX] gi|296436219|gb|ADH18393.1| ribosome recycling factor [Chlamydia trachomatis G/9768] gi|296437147|gb|ADH19317.1| ribosome recycling factor [Chlamydia trachomatis G/11222] gi|296438079|gb|ADH20240.1| ribosome recycling factor [Chlamydia trachomatis G/11074] gi|297140580|gb|ADH97338.1| ribosome recycling factor [Chlamydia trachomatis G/9301] gi|297748808|gb|ADI51354.1| Ribosome Recycling Factor (RRF) [Chlamydia trachomatis D-EC] gi|297749688|gb|ADI52366.1| Ribosome Recycling Factor (RRF) [Chlamydia trachomatis D-LC] Length = 179 Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 66/177 (37%), Positives = 110/177 (62%), Gaps = 3/177 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + + M ++F +K+ RTG+ P++++ V VE YG+ + L+ +A+++V + R L Sbjct: 3 LASAEKEMVGVLTFFQKETRGFRTGKAHPALVETVTVEVYGTTMRLSDIASISVSDMRQL 62 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +D V+++ +GI +NL L PIVEG +RI VPE TEE R ++K +E++K Sbjct: 63 LLSPYDAGTVSAISKGILAANLNLQPIVEGATVRINVPEPTEEYRREVIKQLKRKSEEAK 122 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +++RNIRR D LK K +ED V SLE IQ++TD K I+ ++K+ E+ Sbjct: 123 VAIRNIRRTFNDRLK---KDDNLTEDAVKSLEKKIQELTDKFCKQIEELAKQKEAEL 176 >gi|297156857|gb|ADI06569.1| ribosome recycling factor [Streptomyces bingchenggensis BCW-1] Length = 185 Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 59/173 (34%), Positives = 102/173 (58%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M + K+D +RTGR P+M + + + YG+ P+NQ+A+ +V EPRM VV+ +D Sbjct: 12 KMEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGAMTPINQLASFSVPEPRMAVVTPFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K + ++E+ I +S+LG+NP +G ++R+ PE TE+RR +KVA E +KIS+R++ Sbjct: 72 KTALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEQRRKEFIKVAKGKGEDAKISIRSV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 RR + + K K G+ ED E ++ T + +D + K+ E++ Sbjct: 132 RRKAKESIDKLIKDGEVGEDEGRRAEKELDDTTAKYVAQVDELLKHKEAELLE 184 >gi|28868743|ref|NP_791362.1| ribosome recycling factor [Pseudomonas syringae pv. tomato str. DC3000] gi|213969121|ref|ZP_03397260.1| ribosome recycling factor [Pseudomonas syringae pv. tomato T1] gi|301383984|ref|ZP_07232402.1| ribosome recycling factor [Pseudomonas syringae pv. tomato Max13] gi|302064130|ref|ZP_07255671.1| ribosome recycling factor [Pseudomonas syringae pv. tomato K40] gi|302134057|ref|ZP_07260047.1| ribosome recycling factor [Pseudomonas syringae pv. tomato NCPPB 1108] gi|34924934|sp|Q886P0|RRF_PSESM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|28851982|gb|AAO55057.1| ribosome recycling factor [Pseudomonas syringae pv. tomato str. DC3000] gi|213926119|gb|EEB59675.1| ribosome recycling factor [Pseudomonas syringae pv. tomato T1] gi|331016370|gb|EGH96426.1| ribosome recycling factor [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 185 Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 67/177 (37%), Positives = 105/177 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM ++ L +RTG+ PS+L V V YG+ PL+QVANVTV + R L Sbjct: 7 KDAQTRMQKSLESLTHAFTRIRTGKAHPSILGGVMVPYYGADTPLSQVANVTVKDSRTLQ 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +++ M+A+V++ I S LG NP G++L I +P TEE R K A AE +++ Sbjct: 67 VVAFERNMLAAVDKAIQSSGLGFNPTNLGELLLISMPALTEETRKGFTKQARDAAEDARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +VRNIRRD + LK K + SED +D+QK+TD + +I+ ++K+ ++M Sbjct: 127 AVRNIRRDALSQLKDLVKDKEISEDEERRAADDVQKLTDKFVADIEVAVKQKEADLM 183 >gi|308800952|ref|XP_003075257.1| putative Ribosome recycling factor, (ISS) [Ostreococcus tauri] gi|116061811|emb|CAL52529.1| putative Ribosome recycling factor, (ISS) [Ostreococcus tauri] Length = 236 Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 61/172 (35%), Positives = 101/172 (58%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 +RM T+ + D T+RTGR + S+LD ++V+ YG+ PL +AN + + + +V+ + Sbjct: 62 ERMEKTMDAIANDFSTVRTGRANASVLDRIEVDYYGAATPLKTIANASTPDAQTIVIQPF 121 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 DK + +ER I+ES+LG+ P +G V+R+ VP TEERR L K+ E K+++RN Sbjct: 122 DKGAIKDIERAINESDLGMTPSNDGNVIRLNVPTLTEERRKELAKLVSKLGEDGKVALRN 181 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +RRD M +K K ED +A L+ ++ +T + +K +D K E+ Sbjct: 182 VRRDAMKAYEKLEKDNALGEDEIAKLKKSMEDLTSAYVKKVDEATAAKSAEL 233 >gi|330444066|ref|YP_004377052.1| ribosome recycling factor [Chlamydophila pecorum E58] gi|328807176|gb|AEB41349.1| ribosome recycling factor [Chlamydophila pecorum E58] Length = 180 Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 63/180 (35%), Positives = 109/180 (60%), Gaps = 3/180 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ + +M T+ F +K++ T RTG+ P++++ V V+ YG+ + L+ +++++V + R L Sbjct: 4 LRDAETKMASTLEFFQKEIKTFRTGKAHPALVETVTVDVYGTTMRLSDISSISVADARQL 63 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VVS +D +++ +GI +NL L P VEG ++RI VPE T E R ++K E++K Sbjct: 64 VVSPYDANNASAIAKGILAANLNLQPEVEGAIIRIRVPEPTAELRQDIIKQLRRKCEEAK 123 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I +RNIRR+ D +K K +ED V E +Q++TD K ID ++K+ +I Sbjct: 124 IQIRNIRRETNDKVK---KDSTLTEDAVKGAEKKVQELTDKFCKQIDEIAKQKEIDIASL 180 >gi|313158407|gb|EFR57806.1| ribosome recycling factor [Alistipes sp. HGB5] Length = 185 Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 66/178 (37%), Positives = 107/178 (60%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L RM I L+++++ +R G+ SP+ L+ + V+ +GS VP++ A+VTV + + + Sbjct: 7 LNEASGRMQKAIDHLEEELLNVRAGKASPNALNGIMVDYFGSQVPVSGAASVTVPDAKTI 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WDK M+ +E+ I +SN+GL P G+ +R+ +P TEERR LVK AE ++ Sbjct: 67 LIQPWDKNMLRPLEKAIIDSNIGLTPSNNGEQIRLTIPPLTEERRKELVKQIRGEAETAR 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 IS+RN RRD ++ KK++K G ED E QK+ + K +D + K+KEIM Sbjct: 127 ISLRNARRDAVEAFKKAQKEG-MPEDESKDGETQSQKLLEKFSKLLDEALQRKEKEIM 183 >gi|118474254|ref|YP_892896.1| ribosome recycling factor [Campylobacter fetus subsp. fetus 82-40] gi|166230773|sp|A0RRR3|RRF_CAMFF RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|118413480|gb|ABK81900.1| ribosome recycling factor [Campylobacter fetus subsp. fetus 82-40] Length = 185 Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 62/167 (37%), Positives = 101/167 (60%) Query: 18 ISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVA 77 + LK+D TLRTG+V+ +++D + V+ YGS LNQVA V + + +S W+K M+ Sbjct: 17 LEVLKRDFTTLRTGKVNINIVDHINVDYYGSPTALNQVATVLATDASTISISPWEKTMLK 76 Query: 78 SVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGM 137 ++ I +N+G+NP +G +++ P T E R K A + EK+K+++RNIR+D Sbjct: 77 AISSAIQAANIGVNPNNDGDSVKLFFPPMTTEDRQKNAKEARSMGEKAKVAIRNIRKDAN 136 Query: 138 DHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 D +KK K SED + +++QKITDS I ID ++K+ E++ Sbjct: 137 DDIKKIEKDKSVSEDEIKKGYDEVQKITDSYISKIDQLVKDKEAELL 183 >gi|330950678|gb|EGH50938.1| ribosome recycling factor [Pseudomonas syringae Cit 7] Length = 213 Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 68/177 (38%), Positives = 104/177 (58%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM ++ L +RTG+ PS+L V V YG+ PL+QVANVTV + R L Sbjct: 7 KDAQTRMQKSLESLTHAFTRIRTGKAHPSILGGVMVPYYGADTPLSQVANVTVKDSRTLQ 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +++ M+A+V++ I S LG NP G++L I +P TEE R K A AE +++ Sbjct: 67 VVAFERNMLAAVDKAIQSSGLGFNPTNLGELLLISMPALTEETRKGFTKQARDAAEDARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +VRNIRRD + LK K + SED +DIQK+TD + I+ ++K+ ++M Sbjct: 127 AVRNIRRDALSQLKDLVKEKEISEDEERRAADDIQKLTDKFVAEIEVAVKQKEADLM 183 >gi|148238974|ref|YP_001224361.1| ribosome recycling factor [Synechococcus sp. WH 7803] gi|166231523|sp|A5GJE9|RRF_SYNPW RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|147847513|emb|CAK23064.1| Ribosome recycling factor [Synechococcus sp. WH 7803] Length = 182 Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 104/176 (59%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 +++ M ++ +++ T+RTGR + S+LD + VE YG+ PL +A ++ + + + + Sbjct: 5 DLESSMRKSVEATQRNFNTIRTGRANSSLLDRISVEYYGAETPLKSLATLSTPDSQTIQI 64 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 +D +A +E+ I S LG P +G+V+RI VP TEERR K+A YAE+ K++ Sbjct: 65 QPFDISALALIEKAIAMSELGFTPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGKVA 124 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +RN+RRD +D +KK K G+ SED ++ +QK D I ++ K+ +I+ Sbjct: 125 LRNLRRDAIDKIKKQEKEGEFSEDQSRDAQDSVQKTLDKFIAEVEQHLATKEADIL 180 >gi|15618609|ref|NP_224895.1| ribosome recycling factor [Chlamydophila pneumoniae CWL029] gi|15836231|ref|NP_300755.1| ribosome recycling factor [Chlamydophila pneumoniae J138] gi|16752341|ref|NP_444599.1| ribosome recycling factor [Chlamydophila pneumoniae AR39] gi|33242057|ref|NP_876998.1| ribosome recycling factor [Chlamydophila pneumoniae TW-183] gi|6707740|sp|Q9Z7K6|RRF_CHLPN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|4377002|gb|AAD18838.1| Ribosome Releasing Factor [Chlamydophila pneumoniae CWL029] gi|7188986|gb|AAF37940.1| ribosome recycling factor [Chlamydophila pneumoniae AR39] gi|8979071|dbj|BAA98906.1| ribosome releasing factor [Chlamydophila pneumoniae J138] gi|33236567|gb|AAP98655.1| ribosome releasing factor [Chlamydophila pneumoniae TW-183] gi|269302486|gb|ACZ32586.1| ribosome recycling factor [Chlamydophila pneumoniae LPCoLN] Length = 180 Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 64/177 (36%), Positives = 109/177 (61%), Gaps = 3/177 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 LQ+ + +M + F K++ + RTG+ P++++ V V+ YG+ + L+ +A+++V + R L Sbjct: 4 LQDTEKKMAAALDFFHKEVKSFRTGKAHPALVETVVVDVYGTTMRLSDIASISVADLRQL 63 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+S +D +++ +GI +NL L P VEG ++RI VPE T + R ++K E++K Sbjct: 64 VISPYDGNNASAIAKGIIAANLNLQPEVEGSIIRIKVPEPTADYRQEMIKQLRRKCEEAK 123 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 I+VRNIRR+ D LK K +ED+V E IQ++TD K +D ++K+ EI Sbjct: 124 INVRNIRREANDKLK---KDSALTEDVVKGNEKKIQELTDKFCKQLDELTKQKEAEI 177 >gi|300866975|ref|ZP_07111646.1| Ribosome-recycling factor [Oscillatoria sp. PCC 6506] gi|300335010|emb|CBN56812.1| Ribosome-recycling factor [Oscillatoria sp. PCC 6506] Length = 182 Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 61/177 (34%), Positives = 109/177 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +D M + ++ T+RTGR + S+LD V V+ YGS P+ +A+++ + + Sbjct: 3 LAEAEDHMQKAVESTQRSFNTIRTGRANASLLDRVMVDYYGSPTPIKSLASISTPDASTI 62 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + +D++ + +E+ I S++GL P +G V+R+ +P T +RRL LVK+A ++E+ K Sbjct: 63 NIQPFDRKTINLIEKAISLSDVGLTPSNDGSVIRLNIPPLTTDRRLELVKLAAKFSEEGK 122 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +S+RNIRRD ++ ++K KS + S+D L++ +QK+TD I I+ K+K+I Sbjct: 123 VSIRNIRRDAVESIRKQEKSSELSKDEARDLQDKMQKLTDKYIAKIEEVLAAKEKDI 179 >gi|330872736|gb|EGH06885.1| ribosome recycling factor [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 185 Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 67/177 (37%), Positives = 104/177 (58%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM ++ L +RTG+ PS+L V V YG+ PL+QVANVTV + R L Sbjct: 7 KDAQTRMQKSLESLAHAFTRIRTGKAHPSILGGVMVPYYGADTPLSQVANVTVKDSRTLQ 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +++ M+A+V++ I S LG NP G++L I +P TEE R K A AE +++ Sbjct: 67 VVAFERNMLAAVDKAIQSSGLGFNPTNLGELLLISMPALTEETRKGFTKQARDAAEDARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +VRNIRRD + LK K + SED +D+QK+TD + I+ ++K+ ++M Sbjct: 127 AVRNIRRDALSQLKDLVKDKEISEDEERRAADDVQKLTDKFVAEIEVAVKQKEADLM 183 >gi|329942362|ref|ZP_08291172.1| ribosome recycling factor [Chlamydophila psittaci Cal10] gi|332287003|ref|YP_004421904.1| ribosome recycling factor [Chlamydophila psittaci 6BC] gi|313847600|emb|CBY16588.1| putative ribosome recycling factor [Chlamydophila psittaci RD1] gi|325506673|gb|ADZ18311.1| ribosome recycling factor [Chlamydophila psittaci 6BC] gi|328815272|gb|EGF85260.1| ribosome recycling factor [Chlamydophila psittaci Cal10] gi|328914234|gb|AEB55067.1| ribosome recycling factor [Chlamydophila psittaci 6BC] Length = 180 Score = 124 bits (312), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 61/177 (34%), Positives = 111/177 (62%), Gaps = 3/177 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + + +M + F K++ + RTG+ +P++++ V V+ YG+ + L+ +A+++V + R L Sbjct: 4 LADTEKKMAAALEFFTKEVRSFRTGKANPALVETVTVDVYGTTMRLSDLASISVADTRQL 63 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+S +D V+++ +GI +NL L P VEG ++RI +PE T E R ++K +E++K Sbjct: 64 VISPYDANNVSAISKGIIAANLNLQPDVEGSIVRIKIPEPTAEYRNEVIKQLRRKSEEAK 123 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +++RNIRR+ D LK K +ED V +E IQ++TD K ID ++K+ ++ Sbjct: 124 VAIRNIRRESNDKLK---KDSDLTEDAVKGMEKKIQELTDKFCKQIDEMTKQKEADL 177 >gi|330964144|gb|EGH64404.1| ribosome recycling factor [Pseudomonas syringae pv. actinidiae str. M302091] Length = 185 Score = 124 bits (312), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 67/177 (37%), Positives = 104/177 (58%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM ++ L +RTG+ PS+L V V YG+ PL+QVANVTV + R L Sbjct: 7 KDAQTRMQKSLESLTHAFTRIRTGKAHPSILGGVMVPYYGADTPLSQVANVTVKDSRTLQ 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +++ M+A+V++ I S LG NP G++L I +P TEE R K A AE +++ Sbjct: 67 VVAFERNMLAAVDKAIQSSGLGFNPTNLGELLLISMPALTEETRKGFTKQARDAAEDARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +VRNIRRD + LK K + SED +D+QK+TD + I+ ++K+ ++M Sbjct: 127 AVRNIRRDALSQLKDLVKDKEISEDEERRAADDVQKLTDKFVAEIEVAVKQKEADLM 183 >gi|326776287|ref|ZP_08235552.1| Ribosome-recycling factor [Streptomyces cf. griseus XylebKG-1] gi|326656620|gb|EGE41466.1| Ribosome-recycling factor [Streptomyces cf. griseus XylebKG-1] Length = 185 Score = 124 bits (312), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 103/173 (59%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M + K+D +RTGR P+M + + + YG+ P+NQ+A+ +V E RM VV+ +D Sbjct: 12 KMEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEARMAVVTPFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K + ++E+ I +S+LG+NP +G ++R+ PE T++RR +KVA AE SKIS+R+I Sbjct: 72 KSALRNIEQAIRDSDLGVNPSNDGNIIRVTFPELTQDRRKEYIKVAKTKAEDSKISIRSI 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 RR + L K K ++ ED V E ++ T + +D + K+ E++ Sbjct: 132 RRKAKETLDKLVKDKESGEDEVRRAEKELDDTTAKYVAQVDELLKHKEAELLE 184 >gi|326333657|ref|ZP_08199894.1| ribosome recycling factor [Nocardioidaceae bacterium Broad-1] gi|325948563|gb|EGD40666.1| ribosome recycling factor [Nocardioidaceae bacterium Broad-1] Length = 185 Score = 124 bits (312), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 61/179 (34%), Positives = 105/179 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +M ++ ++D T+R GR +P M + + V+ YG+ P+ Q+A+ T EPR++ Sbjct: 6 LNEADSKMAKSVDSTREDFATIRAGRATPQMFNKILVDYYGTPTPIQQLASFTSPEPRII 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D +A+VE+ I +S+LG+NP +G++LR PE TEERR +K+A AE+ + Sbjct: 66 NIAPFDIGAMANVEKAIRDSDLGVNPSNDGKILRAVFPELTEERRKEYIKLAKEKAEQGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +SVR +R+ L+K K G+AS+D V E + +T ID + K+ E++ Sbjct: 126 VSVRQVRQKAKQGLEKLEKDGEASKDDVTGAEKRLDSLTKKHTDAIDDLLKSKEAELLE 184 >gi|322379208|ref|ZP_08053599.1| ribosome recycling factor [Helicobacter suis HS1] gi|322379720|ref|ZP_08054033.1| ribosome recycling factor [Helicobacter suis HS5] gi|321147869|gb|EFX42456.1| ribosome recycling factor [Helicobacter suis HS5] gi|321148348|gb|EFX42857.1| ribosome recycling factor [Helicobacter suis HS1] Length = 187 Score = 124 bits (312), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 63/177 (35%), Positives = 110/177 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ +++M ++ L KD TLR+G+VS ++L+ V+V+ Y S PLNQVA++ + L Sbjct: 9 QHSQEQMQKSLQSLLKDFTTLRSGKVSINLLEHVRVDYYNSPTPLNQVASILSTDASTLT 68 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++ W+K ++ +ER + E+NLG+NP +G+ +++ P T E+R + K A A EK+K+ Sbjct: 69 ITPWEKGLLKEIERALQEANLGVNPNNDGETIKLFFPPMTSEQRKEIAKEAKAMGEKAKV 128 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +VRNIR+D + +KK K S D ++QK TD+ I I+ + K++E++ Sbjct: 129 AVRNIRQDANNQIKKLEKEKSISADENKKALAEVQKHTDAFINKIEQAVKAKEEEVL 185 >gi|182435653|ref|YP_001823372.1| ribosome recycling factor [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464169|dbj|BAG18689.1| putative ribosome recycling factor [Streptomyces griseus subsp. griseus NBRC 13350] Length = 186 Score = 124 bits (312), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 103/173 (59%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M + K+D +RTGR P+M + + + YG+ P+NQ+A+ +V E RM VV+ +D Sbjct: 13 KMEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEARMAVVTPFD 72 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K + ++E+ I +S+LG+NP +G ++R+ PE T++RR +KVA AE SKIS+R+I Sbjct: 73 KSALRNIEQAIRDSDLGVNPSNDGNIIRVTFPELTQDRRKEYIKVAKTKAEDSKISIRSI 132 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 RR + L K K ++ ED V E ++ T + +D + K+ E++ Sbjct: 133 RRKAKETLDKLVKDKESGEDEVRRAEKELDDTTAKYVAQVDELLKHKEAELLE 185 >gi|57505745|ref|ZP_00371671.1| ribosome recycling factor [Campylobacter upsaliensis RM3195] gi|57016018|gb|EAL52806.1| ribosome recycling factor [Campylobacter upsaliensis RM3195] Length = 185 Score = 124 bits (312), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 66/184 (35%), Positives = 112/184 (60%), Gaps = 2/184 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ + Q K + ++ LKKD TLRTG+V+ +LD ++V+ YGS PLNQVA V Sbjct: 2 LNEIYEKQ--KTQAEKSLEALKKDFTTLRTGKVNVHILDPIQVDYYGSATPLNQVATVLA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + + ++ W+K M+ ++E I +N+G+NP +G+ +++ P T+E+R VK A A Sbjct: 60 SDASTISITPWEKPMLKAIESAIAAANIGVNPNNDGESVKLFFPPMTKEQREENVKHAKA 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 EK+K+S+RN R+D D +KK K SED +++QK+TD ID ++K+ Sbjct: 120 MGEKAKVSIRNGRKDANDTIKKLEKDKAISEDEAKKAYDEVQKLTDLYTHKIDESVKDKE 179 Query: 181 KEIM 184 +++ Sbjct: 180 TQLL 183 >gi|66044594|ref|YP_234435.1| ribosome recycling factor [Pseudomonas syringae pv. syringae B728a] gi|71733636|ref|YP_275975.1| ribosome recycling factor [Pseudomonas syringae pv. phaseolicola 1448A] gi|257487081|ref|ZP_05641122.1| ribosome recycling factor [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289626032|ref|ZP_06458986.1| ribosome recycling factor [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651451|ref|ZP_06482794.1| ribosome recycling factor [Pseudomonas syringae pv. aesculi str. 2250] gi|75503001|sp|Q4ZWS5|RRF_PSEU2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|123635426|sp|Q48F62|RRF_PSE14 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|63255301|gb|AAY36397.1| Ribosome recycling factor [Pseudomonas syringae pv. syringae B728a] gi|71554189|gb|AAZ33400.1| ribosome recycling factor [Pseudomonas syringae pv. phaseolicola 1448A] gi|320323117|gb|EFW79206.1| ribosome recycling factor [Pseudomonas syringae pv. glycinea str. B076] gi|320329611|gb|EFW85600.1| ribosome recycling factor [Pseudomonas syringae pv. glycinea str. race 4] gi|330867586|gb|EGH02295.1| ribosome recycling factor [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330878176|gb|EGH12325.1| ribosome recycling factor [Pseudomonas syringae pv. glycinea str. race 4] gi|330894596|gb|EGH27257.1| ribosome recycling factor [Pseudomonas syringae pv. mori str. 301020] gi|330985111|gb|EGH83214.1| ribosome recycling factor [Pseudomonas syringae pv. lachrymans str. M301315] gi|331009284|gb|EGH89340.1| ribosome recycling factor [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 185 Score = 124 bits (312), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 67/177 (37%), Positives = 104/177 (58%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM ++ L +RTG+ PS+L V V YG+ PL+QVANVTV + R L Sbjct: 7 KDAQTRMQKSLESLTHAFTRIRTGKAHPSILGGVMVPYYGADTPLSQVANVTVKDSRTLQ 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +++ M+A+V++ I S LG NP G++L I +P TEE R K A AE +++ Sbjct: 67 VVAFERNMLAAVDKAIQSSGLGFNPTNLGELLLISMPALTEETRKGFTKQARDAAEDARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +VRNIRRD + LK K + SED +D+QK+TD + I+ ++K+ ++M Sbjct: 127 AVRNIRRDALSQLKDLVKEKEISEDEERRAADDVQKLTDKFVAEIEVAVKQKEADLM 183 >gi|317969623|ref|ZP_07971013.1| ribosome recycling factor [Synechococcus sp. CB0205] Length = 179 Score = 124 bits (311), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 60/172 (34%), Positives = 104/172 (60%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M ++ ++ T+RTGR + S+LD ++VE YG+ PL +A ++ + + + +D Sbjct: 7 MRKSVDSTQRTFNTIRTGRANASLLDKIQVEYYGADTPLKSLATISTPDSSTIQLQPFDG 66 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 + +E+ I S+LGL +G+++RI +P TE+RR L K+A YAE+ K+++RN+R Sbjct: 67 SSLGLIEKAISMSDLGLTCNNDGKLIRINIPPLTEDRRKELCKLAAKYAEEGKVALRNVR 126 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 RD +D +KK K G+ SED ++ +QK+TD I I+ EK+ +I+ Sbjct: 127 RDAIDKVKKQEKEGEFSEDQSRDEQDKVQKLTDKFIAEIEKLLAEKEADILK 178 >gi|229820990|ref|YP_002882516.1| ribosome recycling factor [Beutenbergia cavernae DSM 12333] gi|259494534|sp|C5BWT8|RRF_BEUC1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|229566903|gb|ACQ80754.1| ribosome recycling factor [Beutenbergia cavernae DSM 12333] Length = 185 Score = 124 bits (311), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 58/179 (32%), Positives = 107/179 (59%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +D+M + + ++ +RTGR + ++ + V+ YG+ PL Q+A +T+ E R++ Sbjct: 6 LLEAEDKMDKAVEVARDELGAIRTGRANAALFQKILVDYYGAPTPLQQLAGITIPEARVI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +D+ + +E+ + S+LG+NP +G V+RI +P+ TEERR VK+A E ++ Sbjct: 66 LINPYDRGAASEIEKALRASDLGVNPSDDGNVIRIVLPQLTEERRREYVKLAKGKGEDAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +SVR +RR D L + + G+A ED VA E +++ T S + ID K++E++ Sbjct: 126 VSVRAVRRKAKDELDRIVRDGEAGEDEVARAEKELELATKSHVDAIDDLLSHKERELLE 184 >gi|297891|emb|CAA51077.1| nuclear located protein [Daucus carota] Length = 167 Score = 124 bits (311), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 61/153 (39%), Positives = 96/153 (62%) Query: 32 RVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLN 91 R +P MLD +KVE YG+ L +A ++ + L+V+ +DK + +E+ I S+LG+ Sbjct: 13 RSNPDMLDKIKVEYYGTPTSLKSIAQISTPDSSSLLVNPYDKSSLKDIEKAIVNSDLGIT 72 Query: 92 PIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASE 151 P +G V+R+ +P+ T +RR L K+ AE+ K+++RNIRRD + K K K SE Sbjct: 73 PNNDGDVIRLSIPQLTADRRKELSKIVAKQAEEGKVALRNIRRDAIKSYDKLEKEKKLSE 132 Query: 152 DMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 D V L +D+QK+ D IK +DS F++K+KE+M Sbjct: 133 DNVKDLSSDLQKVIDEYIKKVDSIFKQKEKELM 165 >gi|1149697|emb|CAA60206.1| rrf [Clostridium perfringens] Length = 132 Score = 124 bits (311), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 59/129 (45%), Positives = 89/129 (68%) Query: 47 GSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPET 106 GS PLNQVANV+ EPR+LV++ W+K M+ +E+ I +S+LG+NP +G ++R+ VPE Sbjct: 1 GSMCPLNQVANVSSPEPRLLVITPWEKPMLKEIEKAILKSDLGINPNNDGTIIRLLVPEL 60 Query: 107 TEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITD 166 TEE R LVK E++K+++R+IR+D D +K +K G +ED + E+DIQK+TD Sbjct: 61 TEETRKNLVKNVKKVGEQAKVAIRSIRKDANDKVKNFKKEGTITEDEMKKGEDDIQKVTD 120 Query: 167 STIKNIDSF 175 +K ID+ Sbjct: 121 KFVKEIDTI 129 >gi|283955658|ref|ZP_06373151.1| ribosome recycling factor [Campylobacter jejuni subsp. jejuni 1336] gi|283792883|gb|EFC31659.1| ribosome recycling factor [Campylobacter jejuni subsp. jejuni 1336] Length = 185 Score = 124 bits (311), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 62/168 (36%), Positives = 103/168 (61%) Query: 17 TISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMV 76 ++ LKKD TLRTG+V+ +LD + V+ YG+ PLNQVA V + + ++ W+K ++ Sbjct: 16 SLEALKKDFTTLRTGKVNTHILDHITVDYYGTQAPLNQVATVLASDASTISITPWEKPLL 75 Query: 77 ASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDG 136 ++E I +N+G+NP +G+ +++ P T E+R VK A A EK+K+S+RNIR+D Sbjct: 76 KTIESAIAAANIGVNPNNDGESVKLFFPPMTREQREENVKQAKAMGEKAKVSIRNIRKDA 135 Query: 137 MDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 D +KK K SED +++QK+T++ ID + K+ E++ Sbjct: 136 NDAVKKLEKDKAISEDEAKKAYDEVQKLTNAYTIKIDESVKSKESELL 183 >gi|311744119|ref|ZP_07717925.1| ribosome recycling factor [Aeromicrobium marinum DSM 15272] gi|311313249|gb|EFQ83160.1| ribosome recycling factor [Aeromicrobium marinum DSM 15272] Length = 185 Score = 124 bits (311), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 61/177 (34%), Positives = 101/177 (57%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ +M + +++ +RTGR P+M + + YG+ PL Q+A V EPR + Sbjct: 6 LREADTKMAKAVEHTREEFAAIRTGRAHPAMFAQITADYYGTPTPLQQLAGFQVPEPRTV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +D +++ER I +S+LG+NP +G+VLR+ +PE TEERR VK+A AE K Sbjct: 66 IISPYDAGAKSAIERAIRDSDLGVNPTDDGKVLRVSLPELTEERRKEYVKLARTKAEDGK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 I+VRN+RR+ L ++ K + S+D E + +T + ID + K+ E+ Sbjct: 126 IAVRNLRRNAKQALDRAEKESEISKDDNTGAEKRLDALTKKYVDLIDEVLKGKEAEL 182 >gi|262198484|ref|YP_003269693.1| ribosome recycling factor [Haliangium ochraceum DSM 14365] gi|262081831|gb|ACY17800.1| ribosome recycling factor [Haliangium ochraceum DSM 14365] Length = 185 Score = 124 bits (311), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 68/178 (38%), Positives = 110/178 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + K M I ++++ +RTGR + S+LD VKV+ YGS PL+QVA++ V E R++ Sbjct: 6 LSDTKSGMEKAIEAFERELAKVRTGRANLSLLDGVKVDYYGSPTPLSQVASLNVAEARLM 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V WDK M+ +++ I ++LG+NPI + +++R+P+P T+ERR L K AE ++ Sbjct: 66 TVKPWDKNMIPLIDKAIRAADLGINPISDAELIRLPIPALTKERRNDLAKQTKKMAEDAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 I+VR RRDG D L+ + K + SED + IQ++TD + ID K+++I+ Sbjct: 126 IAVRAARRDGNDMLRAAEKEKEVSEDESKQGQKQIQELTDEYVAKIDKLAAAKEQDIL 183 >gi|237800146|ref|ZP_04588607.1| ribosome recycling factor [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023003|gb|EGI03060.1| ribosome recycling factor [Pseudomonas syringae pv. oryzae str. 1_6] Length = 185 Score = 124 bits (310), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 68/172 (39%), Positives = 101/172 (58%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM ++ L +RTG+ PS+L V V YG+ PL+QVANVTV + R L V ++ Sbjct: 12 RMQKSLESLAHAFTRIRTGKAHPSILGGVMVPYYGADTPLSQVANVTVKDSRTLQVVAFE 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + M+A+V++ I S LG NP G++L I +P TEE R K A AE ++++VRNI Sbjct: 72 RNMLAAVDKAIQSSGLGFNPTNLGELLLISMPALTEETRKGFTKQARDAAEDARVAVRNI 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD + LK K + SED +DIQK+TD + I+ ++K+ ++M Sbjct: 132 RRDALSQLKDLVKEKEISEDEERRGADDIQKLTDKFVAEIEVAVKQKEADLM 183 >gi|189485408|ref|YP_001956349.1| ribosome recycling factor [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|254809541|sp|B1H056|RRF_UNCTG RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|170287367|dbj|BAG13888.1| ribosome recycling factor [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 186 Score = 124 bits (310), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 62/172 (36%), Positives = 113/172 (65%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M TI LK ++ ++RTGRV+ + ++ +KVE+YGS +P+NQ+A+++V + R + + WD Sbjct: 14 MKRTIDRLKCELSSIRTGRVNSAAIETIKVESYGSIMPINQIASISVSDARTIEIRPWDV 73 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 ++++E+ I ++++G++P +G+++R+ VP T+ERR + K AE+ ++++RN R Sbjct: 74 SQLSAIEKAILKADIGMSPANDGKLIRVSVPHLTQERRKEIAKSIGKMAEEFRVAIRNER 133 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 R ++++KK K +ED LE + QK+TD IK ID K+KE+M Sbjct: 134 RVLVENIKKLEKDKVITEDDKKKLEVEAQKVTDGYIKKIDDSIVVKEKEVMQ 185 >gi|62184691|ref|YP_219476.1| ribosome recycling factor [Chlamydophila abortus S26/3] gi|81313123|sp|Q5L766|RRF_CHLAB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|62147758|emb|CAH63502.1| putative ribosome recycling factor [Chlamydophila abortus S26/3] Length = 180 Score = 124 bits (310), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 108/173 (62%), Gaps = 3/173 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + + +M + F K++ + RTG+ +P++++ V V+ YG+ + L+ +A+++V + R L Sbjct: 4 LADTEKKMAAALEFFTKEVRSFRTGKANPALVETVTVDVYGTTMRLSDLASISVADTRQL 63 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+S +D V+++ +GI +NL L P VEG ++RI +PE T E R ++K +E++K Sbjct: 64 VISPYDANNVSAISKGIIAANLNLQPDVEGSIVRIKIPEPTAEYRNEVIKQLRRKSEEAK 123 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 +++RNIRR+ D LK K +ED V +E IQ++TD K ID ++K Sbjct: 124 VAIRNIRRESNDKLK---KDSDLTEDAVKGMEKKIQELTDKFCKQIDKMSKQK 173 >gi|325962762|ref|YP_004240668.1| ribosome recycling factor [Arthrobacter phenanthrenivorans Sphe3] gi|323468849|gb|ADX72534.1| ribosome recycling factor [Arthrobacter phenanthrenivorans Sphe3] Length = 185 Score = 124 bits (310), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 60/179 (33%), Positives = 104/179 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K+D ++RTGR +P + + V VE YGS PL Q+A+ + + R + Sbjct: 6 LLEAEEKMDKAVEVAKEDFASVRTGRANPGLYNKVLVEYYGSPTPLQQLASFAIPDARTI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK + +ER + +S +G NP +G V+RI +PE T+ERR VK+ E +K Sbjct: 66 LITPFDKTALRDIERALSDSEVGANPSNDGNVIRITIPELTKERRKEYVKIVKTKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +S+RNIRR + L + K G+A ED E ++ +T + + ID + K+ E++ Sbjct: 126 VSIRNIRRKAKETLDRLVKDGEAGEDEGTRAEKELDNLTKAHVDGIDELLKRKEAELLE 184 >gi|289675260|ref|ZP_06496150.1| ribosome recycling factor [Pseudomonas syringae pv. syringae FF5] gi|330896060|gb|EGH28281.1| ribosome recycling factor [Pseudomonas syringae pv. japonica str. M301072PT] gi|330936821|gb|EGH40974.1| ribosome recycling factor [Pseudomonas syringae pv. pisi str. 1704B] gi|330975398|gb|EGH75464.1| ribosome recycling factor [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 185 Score = 124 bits (310), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 67/177 (37%), Positives = 103/177 (58%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM ++ L +RTG+ PS+L V V YG+ PL QVANVTV + R L Sbjct: 7 KDAQTRMQKSLESLTHAFTRIRTGKAHPSILGGVMVPYYGADTPLAQVANVTVKDSRTLQ 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +++ M+A+V++ I S LG NP G++L I +P TEE R K A AE +++ Sbjct: 67 VVAFERNMLAAVDKAIQSSGLGFNPTNLGELLLISMPALTEETRKGFTKQARDAAEDARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +VRNIRRD + LK K + SED +D+QK+TD + I+ ++K+ ++M Sbjct: 127 AVRNIRRDALSQLKDLVKEKEISEDEERRAADDVQKLTDKFVAEIEVAVKQKEADLM 183 >gi|162454452|ref|YP_001616819.1| hypothetical protein sce6172 [Sorangium cellulosum 'So ce 56'] gi|189044078|sp|A9GGK7|RRF_SORC5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|161165034|emb|CAN96339.1| rrf [Sorangium cellulosum 'So ce 56'] Length = 185 Score = 124 bits (310), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 60/180 (33%), Positives = 105/180 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +++ + I L++D+ +RTGR + +MLD ++V+ YG P+ Q+A V+V EPR++ Sbjct: 6 IKELREGIEKAIEALRRDLAKVRTGRANAAMLDGIRVDYYGVPTPIVQMATVSVPEPRLI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V W+K V ++E+ I ES+LGLNP V+ ++R+P+P TEERR +VK+ E K Sbjct: 66 SVKPWEKNQVKAIEKAIRESDLGLNPQVDADLIRLPIPPLTEERRREMVKLTKKNGEDCK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++R RRD + + K G S D + + + K +D+ K+K+I+ Sbjct: 126 VAIRKHRRDANEMIDSLEKDGDVSGDEADRAKKKVDDVVAEGTKLVDTVIAGKEKDILDV 185 >gi|119963211|ref|YP_947274.1| ribosome recycling factor [Arthrobacter aurescens TC1] gi|171704626|sp|A1R4W2|RRF_ARTAT RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|119950070|gb|ABM08981.1| ribosome recycling factor [Arthrobacter aurescens TC1] Length = 185 Score = 124 bits (310), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 59/174 (33%), Positives = 103/174 (59%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 ++M + K D ++RTGR +P++ + V VE YG+ PL Q+A+ V + R ++++ + Sbjct: 11 EKMDKAVEVAKDDFASIRTGRANPALYNKVIVEYYGTPTPLQQLASFGVPDARTILITPY 70 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 DK + +E+ + +S +G NP +G V+R+ +PE T+ERR VK+ E +K+S+R+ Sbjct: 71 DKTALRDIEKALSDSEVGANPSNDGNVIRVTIPELTKERRKEYVKIVKGKGEDAKVSIRS 130 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 IRR D L K K G+A ED A E ++ +T + +ID + K+ E++ Sbjct: 131 IRRKAKDSLDKLVKDGEAGEDEGARAEKELDALTKQHVDSIDELLKRKEAELLE 184 >gi|297191773|ref|ZP_06909171.1| ribosome recycling factor [Streptomyces pristinaespiralis ATCC 25486] gi|197721709|gb|EDY65617.1| ribosome recycling factor [Streptomyces pristinaespiralis ATCC 25486] Length = 185 Score = 124 bits (310), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 60/179 (33%), Positives = 105/179 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K D +RTGR P+M + + + YG+ P+NQ+A+ +V EPRM Sbjct: 6 LLEAEEKMEKAVLVAKDDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMA 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV+ +DK + ++E+ I +S+LG+NP +G ++R+ PE T++RR +KVA AE +K Sbjct: 66 VVTPFDKTALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTQDRRKEYIKVAKTKAEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 IS+R++RR + + K K G+ ED E ++ T + +D + K+ E++ Sbjct: 126 ISIRSVRRKAKETIDKLIKDGEVGEDEGRRAEKELDDTTAKYVAQVDELLKHKEAELLE 184 >gi|163839290|ref|YP_001623695.1| ribosome recycling factor [Renibacterium salmoninarum ATCC 33209] gi|189044067|sp|A9WL12|RRF_RENSM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|162952766|gb|ABY22281.1| ribosome recycling factor [Renibacterium salmoninarum ATCC 33209] Length = 185 Score = 124 bits (310), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 61/179 (34%), Positives = 103/179 (57%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K+D +RTGR +P + V V+ YG+ PL Q+A+ V E R L Sbjct: 6 LLEAEEKMDKAVEVAKEDFSAVRTGRANPGLFAKVMVDYYGAPTPLQQLASFAVPEARTL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +D+ + +E+ + S +G NP +G V+R+ +PE T+ERR VK+ +E +K Sbjct: 66 LITPFDRSALGDIEKALSNSEVGANPSNDGNVIRVVMPELTQERRREYVKIVRGKSEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 IS+RNIRR + L K K G A ED + E ++ +T + +NID + K+ E++ Sbjct: 126 ISIRNIRRKAKESLDKIVKDGDAGEDEGSRAEKELDGLTKTHTENIDELLKRKEAELLE 184 >gi|302865909|ref|YP_003834546.1| ribosome recycling factor [Micromonospora aurantiaca ATCC 27029] gi|315502466|ref|YP_004081353.1| ribosome recycling factor [Micromonospora sp. L5] gi|302568768|gb|ADL44970.1| ribosome recycling factor [Micromonospora aurantiaca ATCC 27029] gi|315409085|gb|ADU07202.1| ribosome recycling factor [Micromonospora sp. L5] Length = 185 Score = 124 bits (310), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 61/179 (34%), Positives = 105/179 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M I K++ +RTGR + +M + ++ YGS PL Q+A++ V EPRM+ Sbjct: 6 LLEAEEKMERAIEHAKEEFGGIRTGRANAAMFSRIVIDYYGSPTPLPQMASIAVPEPRMV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D + ++E+ I +S+LG NP EG LRI +P+ TEERR ++KVA E++K Sbjct: 66 IIKPYDNSQLGAMEKAIRDSDLGANPNNEGNQLRIVLPQMTEERRRDMIKVARQKGEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRNIRR + L + K G+ ED E ++ +T + +D + K+ E++ Sbjct: 126 VAVRNIRRKAKEELDRLVKDGEVGEDEGRRAEKELDDLTQRFVAGVDELVKHKESELLE 184 >gi|295396357|ref|ZP_06806523.1| ribosome recycling factor [Brevibacterium mcbrellneri ATCC 49030] gi|294970797|gb|EFG46706.1| ribosome recycling factor [Brevibacterium mcbrellneri ATCC 49030] Length = 185 Score = 124 bits (310), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 60/179 (33%), Positives = 102/179 (56%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ +M I + +RTGR +P + + VE YG+ P+ Q+A+ V E R + Sbjct: 6 LKEASAKMDGAIEATQSAFGNVRTGRANPGLFANIPVEYYGTPTPMQQLASFQVPEARTI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +D+ + +E + S++G NP +G V+R+ +PE TEERR VK+ AE+ + Sbjct: 66 LITPYDRGALTDIENALRNSDIGANPANDGNVIRVTLPELTEERRKEYVKIVKGDAEEGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ISVRN+RR + L++ +K G+A ED V ++ +IT + IDS K+KE++ Sbjct: 126 ISVRNVRRKAKEQLERIQKDGEAGEDEVKHALGELDEITKKKVDEIDSLLAAKEKELLE 184 >gi|315637821|ref|ZP_07893011.1| ribosome recycling factor [Campylobacter upsaliensis JV21] gi|315482062|gb|EFU72676.1| ribosome recycling factor [Campylobacter upsaliensis JV21] Length = 185 Score = 123 bits (309), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 66/184 (35%), Positives = 112/184 (60%), Gaps = 2/184 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ + Q K + ++ LKKD TLRTG+V+ +LD ++V+ YGS PLNQVA V Sbjct: 2 LNEIYEKQ--KAQAEKSLEALKKDFTTLRTGKVNVHILDPIQVDYYGSATPLNQVATVLA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + + ++ W+K M+ ++E I +N+G+NP +G+ +++ P T+E+R VK A A Sbjct: 60 SDASTISITPWEKLMLKAIESAIAAANIGVNPNNDGESVKLFFPPMTKEQREENVKHAKA 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 EK+K+S+RN R+D D +KK K SED +++QK+TD ID ++K+ Sbjct: 120 MGEKAKVSIRNGRKDANDTIKKLEKDKAISEDEAKKAYDEVQKLTDLYTHKIDESVKDKE 179 Query: 181 KEIM 184 +++ Sbjct: 180 TQLL 183 >gi|149178920|ref|ZP_01857498.1| Ribosome recycling factor [Planctomyces maris DSM 8797] gi|148842259|gb|EDL56644.1| Ribosome recycling factor [Planctomyces maris DSM 8797] Length = 186 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 61/184 (33%), Positives = 109/184 (59%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+Q L + ++RM + + + +RTGR +P ++D ++V+ YGS PL Q+ANV+V Sbjct: 1 MDQAEILLDAEERMDKAVHVFQGQLQGIRTGRATPGLVDSIRVDYYGSPTPLKQMANVSV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EP+ +++ +D MV + + I S++GL P +G+V+R+ +P + ERR +V Sbjct: 61 PEPQQILIRPFDAGMVGEIAKAITASDMGLAPNTDGRVVRLNIPPLSTERRRQMVSRVKE 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE+++IS+RNIRRD H +S K ED ++ +Q++T ++S + K+ Sbjct: 121 LAEEARISIRNIRRDANKHADQSEKDKVMGEDERDDTKDQVQELTKKFEGKVNSMADAKE 180 Query: 181 KEIM 184 K++M Sbjct: 181 KDVM 184 >gi|296274577|ref|YP_003657208.1| ribosome recycling factor [Arcobacter nitrofigilis DSM 7299] gi|296098751|gb|ADG94701.1| ribosome recycling factor [Arcobacter nitrofigilis DSM 7299] Length = 185 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 60/174 (34%), Positives = 107/174 (61%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K++M + I LK+D TLRTG+VS ++LD +K++ YG+ L QV +V + +V++ Sbjct: 10 KEKMDNAIEALKRDYKTLRTGKVSTTILDGIKIDYYGTPTELTQVGSVLAPDATTIVINP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 W+K +V +E+ I +N+G+NP +G+V+++ P T ++R K A + +K+++R Sbjct: 70 WEKHLVGDIEKAIQNANIGVNPNNDGEVIKLFFPPMTVDQRKESAKQAKGMTDDAKVAIR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 NIR+ D +K K + ++D +++IQKITDS + D F+ K+ EI+ Sbjct: 130 NIRKHANDRVKVLHKDKEITDDENKKAQDEIQKITDSYVTKADDTFKAKEAEIL 183 >gi|192360685|ref|YP_001981611.1| ribosome recycling factor [Cellvibrio japonicus Ueda107] gi|190686850|gb|ACE84528.1| ribosome recycling factor [Cellvibrio japonicus Ueda107] Length = 150 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 63/150 (42%), Positives = 92/150 (61%) Query: 37 MLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEG 96 MLD V+V YG+ PL+QVAN+ V + R L VS W++ +V +E+ I +S+LGLNP Sbjct: 1 MLDGVRVNYYGTETPLSQVANINVEDARTLSVSPWERNLVPDIEKAIMKSDLGLNPSTNN 60 Query: 97 QVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVAS 156 ++RIP+P TEE R +K A A AE ++++VRN+RRD + +K K SED Sbjct: 61 GLIRIPLPMLTEETRKNFIKQARAEAENARVAVRNVRRDVLADVKALLKDKAISEDDERR 120 Query: 157 LENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++DIQKITD I +D K+ ++M Sbjct: 121 AQDDIQKITDKFIAEVDKALSAKETDLMAI 150 >gi|220912157|ref|YP_002487466.1| ribosome recycling factor [Arthrobacter chlorophenolicus A6] gi|254809488|sp|B8HFN8|RRF_ARTCA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|219859035|gb|ACL39377.1| ribosome recycling factor [Arthrobacter chlorophenolicus A6] Length = 185 Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 59/179 (32%), Positives = 104/179 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K+D ++RTGR +P + + V V+ YGS PL Q+A+ + + R + Sbjct: 6 LLEAEEKMDKAVEVAKEDFASIRTGRANPGLYNRVLVDYYGSPTPLQQLASFAIPDARTI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK + +ER + +S +G NP +G V+RI +PE T+ERR VK+ E +K Sbjct: 66 LITPFDKTALRDIERALSDSEVGANPSNDGNVIRITIPELTKERRKEYVKIVKTKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +S+RNIRR + L + K G+A ED E ++ +T + + ID + K+ E++ Sbjct: 126 VSIRNIRRKAKEALDRLVKDGEAGEDEGTRAEKELDGLTKAHVDGIDELLKRKEAELLE 184 >gi|269219617|ref|ZP_06163471.1| ribosome recycling factor [Actinomyces sp. oral taxon 848 str. F0332] gi|269210859|gb|EEZ77199.1| ribosome recycling factor [Actinomyces sp. oral taxon 848 str. F0332] Length = 185 Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 109/179 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M T+ + + +R+GR + +M + + V+ YG+ PL Q+ + + E R + Sbjct: 6 LLEAEEKMEKTVEVARNEFSGIRSGRANAAMFNAILVDYYGAPTPLQQLGTIAIPEARTV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +D+ +AS+++ + ES+LG+NP +G ++R+ +P TEERR VK+A AE+++ Sbjct: 66 LITPFDRSAMASIDKALRESDLGVNPTDDGNLIRVVLPALTEERRRDYVKLARNKAEEAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VR IRR + L K +K G+A ED V E + +T ++ +D E K+KE++ Sbjct: 126 VAVRGIRRKAKEALDKIKKDGEAGEDDVKRAEEKLDGLTKRHVEQVDKVLEGKEKELLE 184 >gi|89898769|ref|YP_515879.1| ribosome recycling factor [Chlamydophila felis Fe/C-56] gi|123482688|sp|Q252Q4|RRF_CHLFF RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|89332141|dbj|BAE81734.1| ribosome recycling factor [Chlamydophila felis Fe/C-56] Length = 180 Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 59/177 (33%), Positives = 109/177 (61%), Gaps = 3/177 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + + +M + F +K++ RTG+ P++++ V V+ YG+ + L+ +A+++V + R L Sbjct: 4 LADTEKKMATALEFFQKEIRAFRTGKAHPALVETVTVDVYGTTMRLSDLASISVADTRQL 63 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+S +D V+++ +GI +NL L P EG ++RI +PE T E R ++K +E++K Sbjct: 64 VISPYDANNVSAISKGIIAANLNLQPDAEGAIIRIKIPEPTAEYRNEVIKQLRRKSEEAK 123 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +++RN+RR+ D LK K +ED V +E IQ++TD K ID ++K+ ++ Sbjct: 124 VTIRNVRREANDKLK---KDSDLTEDAVKGMEKKIQELTDKFCKQIDEMSKQKEADL 177 >gi|184158417|ref|YP_001846756.1| ribosome recycling factor [Acinetobacter baumannii ACICU] gi|183210011|gb|ACC57409.1| Ribosome recycling factor [Acinetobacter baumannii ACICU] Length = 163 Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 67/151 (44%), Positives = 97/151 (64%), Gaps = 1/151 (0%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM T+ L++ +RTGR PS+L+ V V YGS VPLNQVANV V + R L+V ++ Sbjct: 12 RMLKTLESLEQGFAKVRTGRAHPSILNGVMVPYYGSDVPLNQVANVGVEDSRTLIVQPFE 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + MVA++++ I ES+LGLNPI +R+P+P TEE R + K+A + AE +K+++RNI Sbjct: 72 RTMVAAIDKAIRESDLGLNPIT-ADSIRVPLPALTEETRRDMQKIARSEAENAKVAIRNI 130 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQK 163 RRD + +K K + SED +DI K Sbjct: 131 RRDVLGDIKALLKEKEISEDDERRAGDDIPK 161 >gi|298488335|ref|ZP_07006367.1| Ribosome recycling factor [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157157|gb|EFH98245.1| Ribosome recycling factor [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 185 Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 67/177 (37%), Positives = 103/177 (58%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM ++ L +RTG+ PS+L V V YG+ PL+QVANVTV + R L Sbjct: 7 KDAQTRMQKSLESLNHAFTRIRTGKAHPSILGGVMVPYYGADTPLSQVANVTVKDSRTLQ 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V ++ M+A+V++ I S LG NP G++L I +P TEE R K A AE +++ Sbjct: 67 VVAFELNMLAAVDKAIQSSGLGFNPTNLGELLLISMPALTEETRKGFTKQARDAAEDARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +VRNIRRD + LK K + SED +D+QK+TD + I+ ++K+ ++M Sbjct: 127 AVRNIRRDALSQLKDLVKEKEISEDEERRAADDVQKLTDKFVAEIEVAVKQKEADLM 183 >gi|113477237|ref|YP_723298.1| ribosome recycling factor [Trichodesmium erythraeum IMS101] gi|123160353|sp|Q10Y49|RRF_TRIEI RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|110168285|gb|ABG52825.1| ribosome recycling factor [Trichodesmium erythraeum IMS101] Length = 182 Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 63/179 (35%), Positives = 105/179 (58%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 ++L+ +++M I K T+RTGR + S+LD V VE YGS L +AN+ + + Sbjct: 1 MNLKEAEEKMQKAIEATKNSFNTVRTGRANASLLDRVMVEYYGSPTQLKSMANIGIPDAS 60 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 + + +DK + +E+ I+ S++GL P +G ++R+ +P T ERR +VK AE+ Sbjct: 61 TITIQPYDKTSLGLIEKAINMSDVGLTPNNDGSIIRLNIPALTAERRQEMVKKTAKLAEE 120 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 K+S+RNIRRD +D ++K K+ S+D L++ +QK TD I ID K+K++ Sbjct: 121 GKVSIRNIRRDAVDSIRKQEKNSDISKDESRDLQDKVQKKTDKYIAKIDELLAAKEKDM 179 >gi|210633128|ref|ZP_03297695.1| hypothetical protein COLSTE_01608 [Collinsella stercoris DSM 13279] gi|210159282|gb|EEA90253.1| hypothetical protein COLSTE_01608 [Collinsella stercoris DSM 13279] Length = 177 Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 64/180 (35%), Positives = 103/180 (57%), Gaps = 3/180 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + +I++ M + LK + +RTGR + ++L + V+ YG P+ QVA V V E ML Sbjct: 1 MSDIRENMDKALESLKHNFAKVRTGRANANVLSDITVDYYGVATPITQVAAVKVPEAHML 60 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK +V ++ + + S+LG+ P +G V+R+P P TEERR LVK AE +K Sbjct: 61 VIEPWDKALVNAIVKAVTASDLGITPNSDGIVVRLPFPAPTEERRRELVKECRELAEHAK 120 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RN RRD + L++ + +ED V + +QK TD + +D + K+ E+M Sbjct: 121 IAIRNTRRDANNKLERDE---ELTEDEVRREQAKVQKATDEYVSKVDEMLKAKEAEVMEI 177 >gi|229815412|ref|ZP_04445744.1| hypothetical protein COLINT_02460 [Collinsella intestinalis DSM 13280] gi|229808945|gb|EEP44715.1| hypothetical protein COLINT_02460 [Collinsella intestinalis DSM 13280] Length = 177 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 64/180 (35%), Positives = 104/180 (57%), Gaps = 3/180 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + +I++ M I LK + +RTGR + ++L + V+ YG P+ QVA + V E ML Sbjct: 1 MSDIRENMDKAIDSLKHNFAKVRTGRANANVLSDITVDYYGVATPITQVAAIKVPEAHML 60 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK +V ++ + + S+LG+ P +G V+R+P P TEERR LVK AE +K Sbjct: 61 VIEPWDKALVNAIVKAVTASDLGITPNSDGIVVRLPFPAPTEERRRELVKECRDLAEHAK 120 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIRRD + L++ + +ED V + +QK TD + ++ + K+ E+M Sbjct: 121 IAIRNIRRDANNKLERDE---ELTEDDVRREQAKVQKATDEYVARVEELLKAKEAEVMEI 177 >gi|162447997|ref|YP_001621129.1| ribosome recycling factor [Acholeplasma laidlawii PG-8A] gi|189044043|sp|A9NHC3|RRF_ACHLI RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|161986104|gb|ABX81753.1| ribosome recycling factor [Acholeplasma laidlawii PG-8A] Length = 184 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 69/186 (37%), Positives = 113/186 (60%), Gaps = 6/186 (3%) Query: 1 MNQVID--LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 MN+ D L I+++M ++ L ++ +RTGR +P++LD + V YG PL QVA++ Sbjct: 1 MNEQADMILLEIEEKMEKSLEALGREYAAVRTGRANPNILDRIMVSYYGVDTPLKQVASI 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 +V E + L + +DK ++ +E I+ S+L L P +G +R+ +P T ERR +LVK Sbjct: 61 SVPEAQQLYIKPFDKSILKDIETAINTSSLELPPRNDGTGIRLTLPALTGERRRSLVKDV 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 AE K+++R+IRRDG +HLK K G +D LE D+Q +TD+ +K +D +E Sbjct: 121 EKMAEAGKVAIRHIRRDGNEHLK---KLGLTEDDEKGYLE-DVQALTDAYVKKVDELTKE 176 Query: 179 KKKEIM 184 K +E++ Sbjct: 177 KSEELL 182 >gi|289549254|ref|YP_003474242.1| ribosome recycling factor [Thermocrinis albus DSM 14484] gi|289182871|gb|ADC90115.1| ribosome recycling factor [Thermocrinis albus DSM 14484] Length = 182 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 63/178 (35%), Positives = 112/178 (62%), Gaps = 4/178 (2%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ ++ M ++ K ++ LRTGR S ++++ +KV+ YGS VP+ Q+ ++T+ EP + Sbjct: 6 FKSAEEDMKKAVNHFKNEIAGLRTGRASTALVEELKVDYYGSKVPIKQLGSITIPEPNQI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ VWD V+++E+ I E NL L P +G LRI +P TEERR +V++ H AE+++ Sbjct: 66 LIQVWDSNAVSAIEKAIME-NLQLTPQKQGNTLRITLPPPTEERRREMVRLLHKMAEEAR 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++VRN RRD + ++ G + +++ +LE +QK+TD I I+ E K+ EI+ Sbjct: 125 VAVRNARRDAKEMIEDM--EGISEDEIKRALER-LQKLTDKYIDEINKLTEAKETEIL 179 >gi|261885413|ref|ZP_06009452.1| ribosome recycling factor [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 185 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 61/163 (37%), Positives = 99/163 (60%) Query: 22 KKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVER 81 K+D TLRTG+V+ +++D + V+ YGS LNQVA V + + +S W+K M+ ++ Sbjct: 21 KRDXTTLRTGKVNINIVDHINVDYYGSPTALNQVATVLATDASTISISPWEKTMLKAISS 80 Query: 82 GIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLK 141 I +N+G+NP +G +++ P T E R K A + EK+K+++RNIR+D D +K Sbjct: 81 AIQAANIGVNPNNDGDSVKLFFPPMTTEDRQKNAKEARSMGEKAKVAIRNIRKDANDDIK 140 Query: 142 KSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 K K SED + +++QKITDS I ID ++K+ E++ Sbjct: 141 KIEKDKSVSEDEIKKGYDEVQKITDSYISKIDQLVKDKEAELL 183 >gi|312131765|ref|YP_003999105.1| ribosome recycling factor [Leadbetterella byssophila DSM 17132] gi|311908311|gb|ADQ18752.1| ribosome recycling factor [Leadbetterella byssophila DSM 17132] Length = 186 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 68/183 (37%), Positives = 110/183 (60%), Gaps = 3/183 (1%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 ++DL ++ M I + ++ +R GR S +MLD V VE YG PL+QV++VT + Sbjct: 7 ILDL--TQESMEKVIKHTQIELSKIRAGRASTNMLDGVLVEYYGVMSPLSQVSSVTTPDA 64 Query: 64 RMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAE 123 R + + ++K++++ +ER I SN+GLNP +G+ +R+ VP TEERR LVK A E Sbjct: 65 RTIQIKPFEKKIISDIERAIINSNIGLNPANDGETIRLNVPPLTEERRRELVKRVKAEIE 124 Query: 124 KSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +K+ +R +R++ D LKK + G SED + S E +QK+T+ I+ +D K+ +I Sbjct: 125 VAKVGIRKVRQEMNDDLKKLKNDG-VSEDAIKSGEEKVQKLTNQYIEKVDQLLAAKEADI 183 Query: 184 MHF 186 M Sbjct: 184 MQV 186 >gi|228966769|ref|ZP_04127813.1| Ribosome-recycling factor [Bacillus thuringiensis serovar sotto str. T04001] gi|228792868|gb|EEM40426.1| Ribosome-recycling factor [Bacillus thuringiensis serovar sotto str. T04001] Length = 142 Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 61/128 (47%), Positives = 86/128 (67%) Query: 54 QVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLA 113 Q+AN+TV E R+LV+ +DK + +E+ I +++LGLNP +G V+RI P TEERR Sbjct: 2 QLANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRD 61 Query: 114 LVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNID 173 LVKV YAE++K++VRN+RRDG D LKK K+G+ +ED + DIQK TD I +D Sbjct: 62 LVKVVKKYAEEAKVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVD 121 Query: 174 SFFEEKKK 181 + K+K Sbjct: 122 EIAKNKRK 129 >gi|297626637|ref|YP_003688400.1| ribosome recycling factor (ribosome-releasing factor) (RRF) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922402|emb|CBL56974.1| Ribosome recycling factor (Ribosome-releasing factor) (RRF) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 185 Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 104/178 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +++ + +M I F K+D +RTGR +P+M + ++ E YG P+ Q+A+ + +PR + Sbjct: 6 IKSAEKKMQGAIDFAKEDFSGVRTGRANPAMFEKLEAEYYGVPTPIQQLASFSSPDPRTM 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK + ++E+ + +S+LG+NP +G +R +PE TEERR +K+ AE +K Sbjct: 66 LITPYDKGALGAIEKAVRDSDLGVNPASDGNAIRAVLPELTEERRKEYIKIVRTKAEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 I++R RR GMD +K K + ED E + +T + +D + K+ E++ Sbjct: 126 IAIRGHRRRGMDAIKAQEKDKEIGEDDARVSEKQLDAVTKKYTELVDELLKAKEAELL 183 >gi|311898628|dbj|BAJ31036.1| putative ribosome recycling factor [Kitasatospora setae KM-6054] Length = 185 Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 62/179 (34%), Positives = 103/179 (57%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K D+ +RTGR P+M + E YG+ P+NQ+A+ +V EPRM Sbjct: 6 LLEAEEKMEKAVGVAKDDLAAIRTGRAHPAMFAKIVAEYYGALTPINQLASFSVPEPRMA 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + ++E I +S+LG+NP +G V+R+ +P+ TEERR +K A E +K Sbjct: 66 MVTPFDKTALKAIETAIRDSDLGVNPSNDGSVIRVVLPQLTEERRREYIKQARGKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +SVR+IRR D + K K + ED E ++ +T + ID + K+ E++ Sbjct: 126 VSVRSIRRKAKDAIDKLVKDKEIGEDDGRRGEKELDDLTAKFVAQIDELLKHKEAELLE 184 >gi|78185216|ref|YP_377651.1| ribosome recycling factor [Synechococcus sp. CC9902] gi|123580806|sp|Q3AV97|RRF_SYNS9 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|78169510|gb|ABB26607.1| ribosome recycling factor [Synechococcus sp. CC9902] Length = 182 Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 106/177 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++++ M ++ +++ T+RTGR + S+LD + VE YG+ PL +A ++ + + + Sbjct: 4 KDLEASMRKSLEATQRNFNTIRTGRANSSLLDRISVEYYGADTPLKSLATLSTPDSQTIQ 63 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +D +A++E+ I S LG P +G+V+RI VP TEERR K+A YAE+ K+ Sbjct: 64 IQPFDISGLAAIEKAIAMSELGFTPNNDGKVIRINVPPLTEERRKEFCKMASKYAEEGKV 123 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++RN+RRD +D +KK K G SED ++ +QK+ D I ++ +K+ I+ Sbjct: 124 ALRNLRRDAIDKVKKQEKDGDFSEDQSRDEQDSVQKVLDKFIVELEKQLADKEAAIL 180 >gi|163783687|ref|ZP_02178674.1| ribosome recycling factor [Hydrogenivirga sp. 128-5-R1-1] gi|159881012|gb|EDP74529.1| ribosome recycling factor [Hydrogenivirga sp. 128-5-R1-1] Length = 184 Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 63/171 (36%), Positives = 108/171 (63%), Gaps = 4/171 (2%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M ++ + ++ +RTGR S ++++ +KVE YGS VPL Q+ N++V E +++ VWD Sbjct: 16 MRKSVEHFRGEIAGIRTGRASTALVEELKVEYYGSRVPLKQLGNISVPEHNQILIQVWDN 75 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 + ++E+ I E L LNP +G +RI +P TEERR L ++ H AE+++++VRNIR Sbjct: 76 NAIPAIEKTIREE-LNLNPNTQGNTIRINLPPLTEERRKELARMLHKLAEEARVAVRNIR 134 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RD + +++ G + ++ +LE +QK+TD I I+ E+K++EIM Sbjct: 135 RDAKELIEEL--EGISEDEKKRALER-LQKLTDKHIDEINKLLEKKEEEIM 182 >gi|255535426|ref|YP_003095797.1| Ribosome recycling factor [Flavobacteriaceae bacterium 3519-10] gi|255341622|gb|ACU07735.1| Ribosome recycling factor [Flavobacteriaceae bacterium 3519-10] Length = 184 Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 70/181 (38%), Positives = 102/181 (56%), Gaps = 5/181 (2%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +ID+ K M + L+ +R GR S +M+ V VE YG+ PLNQVANV V + Sbjct: 7 IIDM--TKQEMDAALKHLEHAFQKIRAGRASTTMVQDVMVEYYGAPTPLNQVANVMVPDA 64 Query: 64 RMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAE 123 + + WD+ + ++E+ I SNLG P+ G+ + + VP TEERR L K A AE Sbjct: 65 MTISIQPWDRTAIGAIEKAIINSNLGFAPMNNGENIILNVPPLTEERRRDLAKQAKGEAE 124 Query: 124 KSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +K++VRN R+DGM LK K SED+V E +Q++TD +K D + K+ +I Sbjct: 125 ATKVTVRNARQDGMKELK---KLDGVSEDLVKGGEATVQELTDKYVKLCDDQLKTKEADI 181 Query: 184 M 184 M Sbjct: 182 M 182 >gi|163731915|ref|ZP_02139362.1| ribosome recycling factor [Roseobacter litoralis Och 149] gi|161395369|gb|EDQ19691.1| ribosome recycling factor [Roseobacter litoralis Och 149] Length = 121 Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 59/122 (48%), Positives = 81/122 (66%), Gaps = 1/122 (0%) Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ ++VWDK +V VE+ I ES LG+NP + G ++ +P+PE EERR L KVA YAE Sbjct: 1 MVTINVWDKGLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRRELSKVAGQYAEH 60 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++S+RNIRRDGMD +KK++ G SED E ++Q+ITD IK ID K+ EIM Sbjct: 61 ARVSIRNIRRDGMDQIKKAKADG-MSEDDQKIWEGEVQEITDRYIKGIDEQLASKQSEIM 119 Query: 185 HF 186 Sbjct: 120 QV 121 >gi|221194591|ref|ZP_03567648.1| ribosome recycling factor [Atopobium rimae ATCC 49626] gi|221185495|gb|EEE17885.1| ribosome recycling factor [Atopobium rimae ATCC 49626] Length = 181 Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 65/176 (36%), Positives = 100/176 (56%), Gaps = 3/176 (1%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K M I LK + +RTGR +P LD +KV+ YG P+ Q+A V V E +LV+ Sbjct: 9 KASMDKGIEALKNNFARVRTGRANPHALDPIKVDYYGQPTPIMQLAAVKVPEASLLVIEP 68 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 WDK + ++E+ I S+LG+ P +G +R+P P TEERR L K AE+++I++R Sbjct: 69 WDKTSLKAIEKAIEASDLGITPSNDGATIRLPFPMPTEERRRELAKECAGLAEEARIAIR 128 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 N+RRD +++ + SED A + IQK+TD ++ I+ + K E+M Sbjct: 129 NVRRDINGKIERDE---ELSEDDQAREKKHIQKLTDDSVAEIERLLKVKTAEVMEI 181 >gi|159036877|ref|YP_001536130.1| ribosome recycling factor [Salinispora arenicola CNS-205] gi|189044070|sp|A8M6B4|RRF_SALAI RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|157915712|gb|ABV97139.1| ribosome recycling factor [Salinispora arenicola CNS-205] Length = 185 Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 61/179 (34%), Positives = 106/179 (59%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M I K++ +RTGR + +M + ++ YGS PL Q+A++ V EPRM+ Sbjct: 6 LLEAEEKMERAIEHAKEEFGAIRTGRANAAMFSKIIIDYYGSPTPLPQMASIGVPEPRMV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D ++E+ I +S+LG+NP EG LRI +P+ TEERR ++KVA E++K Sbjct: 66 IIKPYDNSQTNAMEKAIRDSDLGVNPNNEGNQLRILLPQMTEERRREMIKVARHKGEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRNIRR + L + K+G+ ED E ++ +T + +D + K+ E++ Sbjct: 126 VAVRNIRRKAKEELDRLVKAGEVGEDEGRRAEKELDDLTQRFVGVVDELIKHKEAELLE 184 >gi|145593876|ref|YP_001158173.1| ribosome recycling factor [Salinispora tropica CNB-440] gi|189044073|sp|A4X4J5|RRF_SALTO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|145303213|gb|ABP53795.1| ribosome recycling factor [Salinispora tropica CNB-440] Length = 185 Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 60/179 (33%), Positives = 106/179 (59%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M I K++ +RTGR + +M + ++ YGS PL Q+A++ V EPRM+ Sbjct: 6 LLEAEEKMERAIEHAKEEFGAIRTGRANAAMFSKIVIDYYGSPTPLPQMASIGVPEPRMV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D ++E+ I +S+LG+NP EG LRI +P+ TEERR ++KVA E++K Sbjct: 66 IIKPYDTSQTNAMEKAIRDSDLGVNPNNEGNQLRILLPQMTEERRREMIKVARHKGEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRN+RR + L + K+G+ ED E ++ +T + +D + K+ E++ Sbjct: 126 VAVRNVRRKAKEELDRLVKAGEVGEDDGRRAEKELDDLTQRFVGTVDELIKHKEAELLE 184 >gi|149196427|ref|ZP_01873482.1| ribosome releasing factor [Lentisphaera araneosa HTCC2155] gi|149140688|gb|EDM29086.1| ribosome releasing factor [Lentisphaera araneosa HTCC2155] Length = 188 Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 58/175 (33%), Positives = 107/175 (61%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 I ++M I+ + + TG+ +P+++ + V+AYG+ + L + A ++ + R + + Sbjct: 12 ITEKMDKAIAHFQSQIDAYSTGKATPALVQDIMVDAYGTKMRLKETAGISTPDARTIAIQ 71 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 +D ++ +E+ + +N+G+ P+ +GQ++R+P+PE TE+RR +VK E+ KI++ Sbjct: 72 PYDATILPDIEKALMMANIGITPMNDGQLIRLPIPELTEDRRKDMVKDLKGKGEEHKINI 131 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RNIRR+G D+LKK+ K + SED L DIQ +T+ I I S K+K++M Sbjct: 132 RNIRREGNDYLKKALKDHELSEDHQKGLVTDIQDLTNKKIDEIASLSAAKEKDLM 186 >gi|320096225|ref|ZP_08027811.1| ribosome recycling factor [Actinomyces sp. oral taxon 178 str. F0338] gi|319976851|gb|EFW08608.1| ribosome recycling factor [Actinomyces sp. oral taxon 178 str. F0338] Length = 185 Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 61/178 (34%), Positives = 101/178 (56%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +D+M + + ++RTGR + SM + + VE YG+ P+ Q+A+ + E R + Sbjct: 6 LLEAEDKMDKAVDAASHEFASIRTGRATSSMFEQLSVEYYGAPTPMQQLASFQIPEARTV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +D+ + R + ES+LG+NP +G V+R+ +P TEERR VK A + AE+ + Sbjct: 66 IISPFDRTATQEILRTLRESDLGVNPTDDGNVIRVVLPALTEERRKEYVKQAKSKAEEGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +SVR +RR D L + +K G+ASED V E + T + ID K+ E++ Sbjct: 126 VSVRGVRRKAKDQLDRLKKDGEASEDDVDRAEKALDAATRAHTDQIDKMLAAKESELL 183 >gi|32491138|ref|NP_871392.1| hypothetical protein WGLp389 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|30173140|sp|Q8D2G5|RRF_WIGBR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|25166345|dbj|BAC24535.1| frr [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 185 Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 58/162 (35%), Positives = 102/162 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N RM +I F KK++ +RT RVSPS+++ + + YG+ VPL++++N+ + +L Sbjct: 7 ENSNSRMKKSIDFFKKNISKIRTNRVSPSLIENIYINCYGTSVPLSKLSNILSEKSNILK 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D ++ +E+ I S+LG+NP ++ +RI P+ TE RR L+K+ + AE++ I Sbjct: 67 INVFDNNIIKKIEQAILSSDLGVNPQIQENYIRIEFPKLTEARRFELIKLINKEAEQNII 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTI 169 S+RNIRRD + +KK K+ +D + IQ +T+S I Sbjct: 127 SIRNIRRDANEKIKKLIKAKTIGKDEDKKFQEVIQNLTNSRI 168 >gi|110004372|emb|CAK98710.1| ribosome recycling factor protein [Spiroplasma citri] Length = 182 Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 64/175 (36%), Positives = 106/175 (60%), Gaps = 3/175 (1%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K++M I + +++ +RTGR +P+ML + ++ YG+ P+ Q+AN+ V E R LV+ Sbjct: 10 KEKMEKVIVSFENELIKIRTGRANPNMLSHIMIDYYGTLTPIQQLANIMVPEARQLVIKP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +D+ ++ + I++++LGL P E ++R+ +P TEERR LVK +E+ K+++R Sbjct: 70 YDRSIINLILTAINKADLGLTPSSEADLIRLNIPPLTEERRKMLVKEMWKASEQFKVAIR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 N RRD +HLK K +ED E ++QK+TD IK ID K+KE+M Sbjct: 130 NERRDSNEHLK---KDSDLTEDDKKYYEGEVQKLTDQFIKKIDEKATLKEKELME 181 >gi|317125390|ref|YP_004099502.1| ribosome recycling factor [Intrasporangium calvum DSM 43043] gi|315589478|gb|ADU48775.1| ribosome recycling factor [Intrasporangium calvum DSM 43043] Length = 185 Score = 121 bits (303), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 59/174 (33%), Positives = 102/174 (58%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 +++M + LK+D +RTGR +P + + + V YG+ PL Q+A+ EPR ++V Sbjct: 10 EEKMDKAVEVLKEDFAGIRTGRANPGLFNKLLVNYYGAPTPLQQLASFQNPEPRTILVVP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +DK + +E+ I +S+LG+NP +G +R +PE TE+RR +K+AH AE+ ++S+R Sbjct: 70 FDKSAMHEIEKAIRDSDLGVNPASDGHQIRCVMPELTEQRRKEYIKLAHHKAEEGRVSIR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 N+RR + + K G ED A E +++ +T IDS + K+ E++ Sbjct: 130 NVRRKAKTDIDRLVKDGDVGEDEGARAEKELEALTKKHTDLIDSLVKHKESELL 183 >gi|303277739|ref|XP_003058163.1| predicted protein [Micromonas pusilla CCMP1545] gi|226460820|gb|EEH58114.1| predicted protein [Micromonas pusilla CCMP1545] Length = 167 Score = 121 bits (303), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 66/171 (38%), Positives = 99/171 (57%), Gaps = 5/171 (2%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M + L++D+ LRTGR SP ML+ + V+AYG PL + +VT + L V ++D Sbjct: 1 MDAAVEALERDLGKLRTGRASPGMLESLVVDAYGEPTPLRNLGSVTARNAQTLAVMLYDP 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQ-VLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + +V+ I ES LG NP +G L +PVPE T E ++ + K+ H E +KISVRN Sbjct: 61 TLKGAVQNAITESPLGFNPQEDGDGTLLVPVPEMTHETKVQVAKLCHRAGETAKISVRNA 120 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 RR GMD +KK+ +ED E D+QK++++ +K I+ K+K I Sbjct: 121 RRKGMDVIKKA----TMTEDEGNRAEKDVQKMSEAFVKKIEELVSAKEKSI 167 >gi|152965386|ref|YP_001361170.1| ribosome recycling factor [Kineococcus radiotolerans SRS30216] gi|189044059|sp|A6W7W7|RRF_KINRD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|151359903|gb|ABS02906.1| ribosome recycling factor [Kineococcus radiotolerans SRS30216] Length = 185 Score = 121 bits (303), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 106/178 (59%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M I K D +RTGR + +M + V+ YG+ PL Q+A+ + E R + Sbjct: 6 LLEAEEKMEKAIEVAKGDFGAIRTGRANAAMFHKIMVDYYGAPTPLQQLASFQIPEARSV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +D+ ++ +E+ + S+LG+NP +G V+RI +P+ TEERR +K+A AE ++ Sbjct: 66 LITPFDRAAMSEIEKALRNSDLGVNPGNDGNVIRIVLPQLTEERRKDYIKIARTKAEDAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +S+RN+RR + L + K G+A ED V E +++ +T + ID + K+ E++ Sbjct: 126 VSLRNVRRRAKEELDRIVKDGEAGEDEVGRAEKELEAVTKKHVDAIDELLKNKEAELL 183 >gi|300214368|gb|ADJ78784.1| Ribosome-recycling factor (RRF) (Ribosome-releasing factor) [Lactobacillus salivarius CECT 5713] Length = 132 Score = 120 bits (302), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 59/131 (45%), Positives = 91/131 (69%) Query: 55 VANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLAL 114 +A ++V E R+L+V+ +DK + ++E I S+LG+ P+ +G +R+ +P+ TEERR L Sbjct: 1 MAQISVPEARVLLVTPYDKSSLKNIEHAIMASDLGIAPMNDGTAIRLVIPQLTEERRKEL 60 Query: 115 VKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDS 174 K A +E K++VRNIRRD MD LKK++K+G +ED + LEN QK+TD +IKNID Sbjct: 61 AKQVKAVSETGKVAVRNIRRDMMDALKKAQKNGDLTEDDLRDLENQAQKVTDESIKNIDK 120 Query: 175 FFEEKKKEIMH 185 E+K+KE++ Sbjct: 121 ITEDKEKEVLE 131 >gi|319953568|ref|YP_004164835.1| ribosome recycling factor [Cellulophaga algicola DSM 14237] gi|319422228|gb|ADV49337.1| ribosome recycling factor [Cellulophaga algicola DSM 14237] Length = 185 Score = 120 bits (302), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 69/178 (38%), Positives = 99/178 (55%), Gaps = 3/178 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + + M +I L K +R G+ +P ML V V+ YGS PL QVANV+ + R L Sbjct: 9 LDSTNESMNGSIDHLVKAFAKIRAGKANPIMLSSVMVDYYGSQTPLAQVANVSTPDARTL 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V W+K M+ +E+ I +NLG NP+ G + I VP TEERR L K A AE +K Sbjct: 69 TVQPWEKNMLQPIEKAIMIANLGFNPMNNGDFIIISVPPLTEERRRDLAKQAKGEAEDAK 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 + +RN R++ K+ R ASED+ + E DIQ++T+ + I+ K+ EIM Sbjct: 129 VGIRNARQEAN---KEIRALDDASEDLKKNAEADIQELTNKFSRKIEEVLTVKEAEIM 183 >gi|255559434|ref|XP_002520737.1| ribosome recycling factor, putative [Ricinus communis] gi|223540122|gb|EEF41699.1| ribosome recycling factor, putative [Ricinus communis] Length = 247 Score = 120 bits (302), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 61/155 (39%), Positives = 97/155 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ K RM TI ++ + ++RTGR +PSMLD ++VE YG+ V L +A ++ + L+ Sbjct: 84 KDAKARMEKTIETVRTNFNSIRTGRANPSMLDKIEVEYYGTPVSLKSIAQISTPDASSLL 143 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +DK + S+E+ I S+LGL P +G+V+R+ +P+ T ERR + K+ AE+ K+ Sbjct: 144 VQPYDKSSLKSIEKAIVSSDLGLTPNNDGEVIRLSIPQLTSERRKEMSKMVAKLAEEGKV 203 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQ 162 ++RNIRRD + +K K K SED V L D+Q Sbjct: 204 ALRNIRRDALKAYEKLEKEKKLSEDNVKDLSGDLQ 238 >gi|50345004|ref|NP_001002174.1| ribosome-recycling factor, mitochondrial [Danio rerio] gi|49256675|gb|AAH74048.1| Mitochondrial ribosome recycling factor [Danio rerio] Length = 257 Score = 120 bits (301), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 68/183 (37%), Positives = 111/183 (60%), Gaps = 5/183 (2%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +I L+ +K+ M ++ LK D + R SP LD + V PLNQ+ +++ P Sbjct: 77 IISLEEVKEDMAAVLAALKDDFSRNLSVRTSPGALDHITVTTKDGKFPLNQLGQISMKSP 136 Query: 64 RMLVVSV--WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 ++LVV++ + + MVA V R + ES++GLNP VEG ++R+PVP+ T E R LVK+A + Sbjct: 137 QLLVVNMTGFPEAMVA-VTRALRESSMGLNPEVEGTIIRVPVPKVTREHRENLVKLAKQF 195 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 + KSK S+R +R + + +KKS+ + S+D + +E IQ++TDS +ID K K Sbjct: 196 SNKSKDSLRRVRSNAISQVKKSKDA--VSDDTIHLIEKQIQQMTDSFTADIDKQLATKTK 253 Query: 182 EIM 184 E++ Sbjct: 254 ELL 256 >gi|269795652|ref|YP_003315107.1| ribosome recycling factor [Sanguibacter keddieii DSM 10542] gi|269097837|gb|ACZ22273.1| ribosome recycling factor [Sanguibacter keddieii DSM 10542] Length = 185 Score = 120 bits (301), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 63/179 (35%), Positives = 99/179 (55%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +D+M I K ++RTGR + +M + VE YG+ PL Q+A+ E R + Sbjct: 6 LLEAEDKMDKAIEVAKNGFASIRTGRANSAMFSRITVEYYGAQTPLQQLASFNTPEARTI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V +DK + ++ER + +S+LG+NP +G V+RI +P T ERR VK+A AE ++ Sbjct: 66 LVVPFDKTALPAIERALRDSDLGVNPSNDGNVIRIVLPVLTAERRKEYVKLAKTQAEDAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +SVR +RR D L K K G A ED E +++ IT + +D K+ E++ Sbjct: 126 VSVRAVRRKAKDTLDKLVKDGDAGEDEGVRAEKELEAITKRHVDVVDQLLASKEAELLE 184 >gi|11277801|pir||T48108 hypothetical protein F16M2.40 - Arabidopsis thaliana gi|7523401|emb|CAB86420.1| putative protein [Arabidopsis thaliana] Length = 289 Score = 120 bits (301), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 65/183 (35%), Positives = 109/183 (59%), Gaps = 6/183 (3%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 ++K +M TI L+ ++RTGR + +MLD ++VE YGS V L +A ++ + L++ Sbjct: 106 DVKSKMEKTIETLRTSFNSIRTGRSNAAMLDKIEVEYYGSPVSLKSIAQISTPDGSSLLL 165 Query: 69 SVWDKE------MVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 +DK + ++E+ I S+LG+ P +G V+R+ +P T +RR L KV + Sbjct: 166 QPYDKSRYMTNGALMAIEKAIVNSDLGVTPNNDGDVIRLSLPPLTSDRRKELSKVVAKQS 225 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 E+ K+++RNIRRD + K K K SED V L +D+QK+ D +K I+ +++K+KE Sbjct: 226 EEGKVALRNIRRDALKSYDKLEKEKKLSEDNVKDLSSDLQKLIDVYMKKIEELYKQKEKE 285 Query: 183 IMH 185 +M Sbjct: 286 LMK 288 >gi|325110872|ref|YP_004271940.1| ribosome recycling factor [Planctomyces brasiliensis DSM 5305] gi|324971140|gb|ADY61918.1| ribosome recycling factor [Planctomyces brasiliensis DSM 5305] Length = 186 Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 60/178 (33%), Positives = 107/178 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + ++RM +S L + LRTGR +P ++D ++V+ YGS PL Q+AN++V EP+ + Sbjct: 7 LLDCEERMDKAVSVLSDQLKGLRTGRANPGLVDSIRVDYYGSPTPLKQLANISVPEPQQI 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +D + + + I S++GL P +G+++R+ +P + ERR LV +AE+++ Sbjct: 67 VIRPFDASAINEIVKAIQASDVGLAPNNDGKLVRLNIPPLSTERRKQLVSRVKEFAEEAR 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +S+RNIRRD H +S K SED +++ +Q++T ++ K+K+IM Sbjct: 127 VSIRNIRRDANKHADQSEKDKLFSEDERDDVKDKVQELTKKHEGLVNDAAAAKEKDIM 184 >gi|256832239|ref|YP_003160966.1| ribosome recycling factor [Jonesia denitrificans DSM 20603] gi|256685770|gb|ACV08663.1| ribosome recycling factor [Jonesia denitrificans DSM 20603] Length = 185 Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 59/179 (32%), Positives = 105/179 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K++ +RTGR + +M + V+ YG+ PL Q+A++ + E R + Sbjct: 6 LLEAEEKMDRAVEVAKEEFAAIRTGRANAAMFSKITVDYYGAPTPLQQLASMNIPEARTV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +DK ++ +E+ + +S+LG+NP +G +RI +P TEERR VK+A E+ + Sbjct: 66 LISPYDKSAMSLIEKALRDSDLGVNPSNDGNAIRINLPALTEERRRDYVKLAKNKGEEGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +SVRNIRR D L + K G+ SED E +++ +T + ID+ K+ E++ Sbjct: 126 VSVRNIRRKAKDQLDRLVKDGELSEDEGTRAEKELEALTRRHVDEIDTLLAGKEAELLE 184 >gi|157738471|ref|YP_001491155.1| ribosome recycling factor [Arcobacter butzleri RM4018] gi|315635330|ref|ZP_07890598.1| ribosome recycling factor [Arcobacter butzleri JV22] gi|226703250|sp|A8EX12|RRF_ARCB4 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|157700325|gb|ABV68485.1| ribosome releasing factor [Arcobacter butzleri RM4018] gi|315480364|gb|EFU71029.1| ribosome recycling factor [Arcobacter butzleri JV22] Length = 185 Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 59/174 (33%), Positives = 107/174 (61%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K+ M +I LKKD +LRTG+V+ ++LD +KV+ YG+ L+QV +V + + ++ Sbjct: 10 KEHMEKSIEALKKDYKSLRTGKVNTNILDGIKVDYYGTMTDLSQVGSVLATDATTITINP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 W+K ++ ++E+ I +N+G+NP +GQ++++ P T E+R K A + +K+++R Sbjct: 70 WEKNLLGTIEKAIQNANIGVNPNNDGQIIKLFFPPMTVEQRQETAKHAKTMTDNAKVAIR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 NIR++ + +K K +ED +++IQKITDS + D + K+KEI+ Sbjct: 130 NIRQNSNNKVKTLLKDKAITEDESKKAQDEIQKITDSYVLKADETLKAKEKEIL 183 >gi|302837099|ref|XP_002950109.1| hypothetical protein VOLCADRAFT_80962 [Volvox carteri f. nagariensis] gi|300264582|gb|EFJ48777.1| hypothetical protein VOLCADRAFT_80962 [Volvox carteri f. nagariensis] Length = 266 Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 60/179 (33%), Positives = 107/179 (59%), Gaps = 4/179 (2%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ +RM ++ + T+RTGR +P++LD + V+ +G+ PL Q+ VTV + + L+ Sbjct: 92 KDADERMKKCLNVVADGFNTIRTGRANPAILDKITVDYFGAPTPLKQMGAVTVPDSQTLM 151 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++ +D+ + +ER I ES++G+NP +G+ +R+ +P T+ERR L K E K+ Sbjct: 152 IAPFDRSTLKDIERAIQESDIGINPNNDGERIRLVMPPMTQERRKDLAKQVSKMTEDGKV 211 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+R+D M + K + +D +LE+DIQK+TD +K +D + K E+M Sbjct: 212 AVRNVRKDAMKKVDKV----ELPKDDKKALEDDIQKLTDLYVKKLDDMAKAKTDEVMKL 266 >gi|194477329|ref|YP_002049508.1| ribosome releasing factor [Paulinella chromatophora] gi|171192336|gb|ACB43298.1| ribosome releasing factor [Paulinella chromatophora] Length = 180 Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 108/178 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + +++ M ++ ++ + T+RTGR +PS+LD + V+ YG+ L +A V + + + Sbjct: 1 MNDLETSMNKSVEATQRTLNTIRTGRANPSLLDKITVDYYGAETSLKSMATVFAPDSQTI 60 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + +D + + +E+ I S+LGL +G+++RI +P T++RR L K+A YAE+ K Sbjct: 61 AIQPFDIKSMGLIEKAIAISDLGLTTSNDGKIIRINIPPLTQDRRKDLCKLAAKYAEEGK 120 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++RN+RRD +D +KK+ K G SED + +Q +TD +I I+ +K+ EI+ Sbjct: 121 VALRNLRRDAIDKIKKNEKDGSLSEDQSRDQQKAVQNLTDISISQIEKNLSQKEIEII 178 >gi|307106026|gb|EFN54273.1| hypothetical protein CHLNCDRAFT_135841 [Chlorella variabilis] Length = 177 Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 63/177 (35%), Positives = 106/177 (59%), Gaps = 5/177 (2%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + K M ++ L+ ++ +RTGR +P MLD +KV+ YG +PL +V+V +P++L Sbjct: 1 MTETKSLMERALAHLQGELSNIRTGRATPGMLDHLKVDVYGDRLPLKACGSVSVRDPQLL 60 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V++V+D + V SV + + ES L L+P EGQ + +P+P T E A++KV E++K Sbjct: 61 VITVFDVDAVPSVVKAVSESPLRLSPRAEGQEVLVPIPRPTIESLEAMMKVCKVEGEQAK 120 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +SVR+ R+ MD KK SED +E ++QK+TD ++ ++ + K+K I Sbjct: 121 VSVRHARKLAMDAAKKL-----GSEDERKRVEREVQKLTDEYVREVEGAVQRKEKSI 172 >gi|119717464|ref|YP_924429.1| ribosome recycling factor [Nocardioides sp. JS614] gi|166230809|sp|A1SLQ7|RRF_NOCSJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|119538125|gb|ABL82742.1| ribosome recycling factor [Nocardioides sp. JS614] Length = 185 Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 108/180 (60%), Gaps = 1/180 (0%) Query: 6 DLQNIKD-RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D+ N D +M ++ +++ +R GRV+PSM + + V+ YGS PL Q+A+ T E R Sbjct: 4 DILNEADGKMDKSVEATREEFAAIRAGRVNPSMFNKIVVDYYGSPTPLQQLASFTAPEAR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 +++++ +D+ + ++ + I +S+LG+NP +G+V+R PE TEERR +K++ AE+ Sbjct: 64 IILIAPYDQGAMHNILKAIRDSDLGVNPADDGKVIRCVFPELTEERRKEYIKISRHKAEE 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++VRN+RR HL++ K G+ +D + E + +T ID + K+ E++ Sbjct: 124 GRVAVRNLRRTAKQHLERLEKDGEVGQDDLTGAEKRLDGLTKKHTDAIDEMLKHKEAELL 183 >gi|205373430|ref|ZP_03226234.1| ribosome recycling factor [Bacillus coahuilensis m4-4] Length = 132 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 57/132 (43%), Positives = 90/132 (68%) Query: 55 VANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLAL 114 +A+++V E R+LV+ +DK ++ +E+ I S+LGLNP +G ++R+ +P TEERR L Sbjct: 1 MASISVPEARLLVIQPYDKSILGEIEKAILRSDLGLNPSNDGSIIRLMIPALTEERRKEL 60 Query: 115 VKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDS 174 VK+ AE +K+++RNIRRD D LKK K+G+ +ED + +D+QK+TD I+ IDS Sbjct: 61 VKLVKKEAEDAKVAIRNIRRDTNDDLKKQEKNGEITEDQLRGYSDDVQKLTDKNIEKIDS 120 Query: 175 FFEEKKKEIMHF 186 ++K+ EIM Sbjct: 121 MTKDKENEIMSV 132 >gi|325278093|ref|ZP_08143609.1| ribosome recycling factor [Pseudomonas sp. TJI-51] gi|324096770|gb|EGB95100.1| ribosome recycling factor [Pseudomonas sp. TJI-51] Length = 133 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 56/127 (44%), Positives = 85/127 (66%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ L +++ +RTGR PS+LD V+V A+GS +PLNQVA +TV + R L Sbjct: 7 KDAQERMTKSLEALARNLAAIRTGRAHPSILDTVRVTAWGSEMPLNQVAAITVEDARTLK 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + DK + A++E+ I S+LGLNP G +R+P+P TEE R K A A AE +K+ Sbjct: 67 IVAHDKNLSAAIEKAILTSDLGLNPSSAGTTIRVPMPALTEETRKGYTKQASAVAEDAKV 126 Query: 128 SVRNIRR 134 +VRN+RR Sbjct: 127 AVRNVRR 133 >gi|126642019|ref|YP_001085003.1| ribosome releasing factor [Acinetobacter baumannii ATCC 17978] Length = 144 Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 63/142 (44%), Positives = 91/142 (64%), Gaps = 1/142 (0%) Query: 43 VEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIP 102 V YGS VPLNQVANV V + R L+V +++ MVA++++ I ES+LGLNPI +R+P Sbjct: 2 VPYYGSDVPLNQVANVGVEDSRTLIVQPFERTMVAAIDKAIRESDLGLNPIT-ADSIRVP 60 Query: 103 VPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQ 162 +P TEE R + K+A + AE +K+++RNIRRD + +K K + SED +DIQ Sbjct: 61 LPALTEETRRDMQKIARSEAENAKVAIRNIRRDVLGDIKALLKEKEISEDDERRAGDDIQ 120 Query: 163 KITDSTIKNIDSFFEEKKKEIM 184 KITD + +D K+ E+M Sbjct: 121 KITDKYVAEVDKRLAAKEAELM 142 >gi|213029166|ref|ZP_03343613.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 136 Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 59/125 (47%), Positives = 84/125 (67%) Query: 28 LRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESN 87 +RTGR SPS+LD + VE YG+ PL Q+A+VTV + R L ++V+D+ M +VE+ I S+ Sbjct: 8 VRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMGPAVEKAIMASD 67 Query: 88 LGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSG 147 LGLNP G +R+P+P TEERR L K+ AE+++++VRN+RRD D +K K Sbjct: 68 LGLNPSSAGTDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDK 127 Query: 148 KASED 152 SED Sbjct: 128 AISED 132 >gi|84498386|ref|ZP_00997183.1| ribosome recycling factor [Janibacter sp. HTCC2649] gi|84381886|gb|EAP97769.1| ribosome recycling factor [Janibacter sp. HTCC2649] Length = 185 Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 56/179 (31%), Positives = 104/179 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K + +RTGR PSM + V V+ YG+ PL Q+A+ E R + Sbjct: 6 LLEAEEKMDKAVEVAKDNFAAIRTGRAHPSMFNKVIVDYYGAPTPLQQLASFQTPEARTI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +DK + ++E+ + +++LG+NP +G ++R +P+ TEERR +K+A AE +K Sbjct: 66 LISPFDKGAMNNIEKALRDADLGVNPSNDGNIIRCILPQLTEERRKEYIKMARGQAEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +++RN+RR + +++ K G ED + E D++ T + ID + K+ E++ Sbjct: 126 VAIRNVRRTAKESIERLVKDGDVGEDEGSRAEKDLESTTKKYVDTIDEVLKGKETELLE 184 >gi|171910236|ref|ZP_02925706.1| ribosome recycling factor [Verrucomicrobium spinosum DSM 4136] Length = 188 Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 67/176 (38%), Positives = 110/176 (62%), Gaps = 2/176 (1%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDL--VKVEAYGSHVPLNQVANVTVLEPRMLVV 68 ++ M + + + +RTG+ SP++++ + V +YGS++ L Q+A ++ EPR++ + Sbjct: 11 EENMTKAVEYAIHEFAAVRTGKASPALVENTDIWVNSYGSNMKLKQLAMISTPEPRLIRI 70 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 +D + +ERGI+ SNLGLNP VEG+V+R+PVPE + ERR +VK AE +++ Sbjct: 71 EPFDPSTLKDIERGINASNLGLNPSVEGKVIRLPVPELSTERRQQMVKQVKGMAEDARVR 130 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 VR +RR+ M+ LKK K+G +ED + E ++Q TD I ID K+KEI+ Sbjct: 131 VRAVRRESMEELKKLEKAGTITEDDLHRGEKEVQAFTDKKIAEIDQHVVSKEKEIL 186 >gi|68171353|ref|ZP_00544749.1| Ribosome recycling factor [Ehrlichia chaffeensis str. Sapulpa] gi|67999224|gb|EAM85878.1| Ribosome recycling factor [Ehrlichia chaffeensis str. Sapulpa] Length = 187 Score = 118 bits (295), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 70/182 (38%), Positives = 109/182 (59%), Gaps = 6/182 (3%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL--EPRM 65 Q+ K RM ++S D+ +RTGR S+L+ + VE YG V LN +++V+V + + Sbjct: 7 QDAKSRMEKSLSVYLSDIDGIRTGRARTSVLNGIVVETYGGRVKLNTISSVSVSVSDNKT 66 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 L++ VWD + +++ I SNLG E +R+ VP+ T++ R LVK+ +E Sbjct: 67 LMIKVWDSNNIGAIKTAIMNSNLGFGISCEATTIRLTVPDMTQDMRKNLVKLLGKISEDC 126 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASED--MVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 ++S+RNIRRD MD LK + S + SED VA +E IQKITD +K ++ F K+KE+ Sbjct: 127 RVSIRNIRRDIMDRLKVMQDSKEISEDDLRVAGVE--IQKITDDIMKKVNDAFTSKEKEL 184 Query: 184 MH 185 +H Sbjct: 185 LH 186 >gi|312959395|ref|ZP_07773912.1| Ribosome-recycling factor [Pseudomonas fluorescens WH6] gi|311286112|gb|EFQ64676.1| Ribosome-recycling factor [Pseudomonas fluorescens WH6] Length = 185 Score = 117 bits (294), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 68/172 (39%), Positives = 98/172 (56%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM ++ L +RTG+ PS+L V V YG+ PL+ VANVTV + R L V ++ Sbjct: 12 RMQKSLESLSHAFGQIRTGKAHPSILGSVMVPYYGTDTPLSGVANVTVKDSRTLQVVAFE 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + M+A+V++ I + L LNP G++L I +P TEE R K A + AE ++++VRNI Sbjct: 72 RNMLAAVDKAIQSAGLNLNPTNLGELLLISMPALTEETRKGFTKQARSAAEDARVAVRNI 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD + LKK K + SED DI K+T I EEK+K++M Sbjct: 132 RRDALGDLKKLVKDKEISEDEERRAVADIDKLTKDAEAQITKATEEKEKDLM 183 >gi|293400528|ref|ZP_06644673.1| ribosome recycling factor [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305554|gb|EFE46798.1| ribosome recycling factor [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 180 Score = 117 bits (293), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 61/156 (39%), Positives = 98/156 (62%), Gaps = 3/156 (1%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K +M + L +++ T+RTG + S+L+ V E YGS P+NQVA++ V+E R L++ Sbjct: 8 KHKMEKAVEKLDENLKTIRTGVANASLLEHVHFEYYGSETPINQVASIKVVEGRQLMIKP 67 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +D+ + +ER I S+ GL P +G+V+R+ VP TEERR L K A E++KI+VR Sbjct: 68 YDRSTLKDIERAIATSDTGLVPQSDGEVIRLNVPALTEERRKQLSKEADKMGEEAKIAVR 127 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITD 166 N+RR+ D +KK + + +ED ++ +QK+TD Sbjct: 128 NVRREANDAIKKDK---ELTEDDAKRMQEKVQKLTD 160 >gi|296123507|ref|YP_003631285.1| ribosome recycling factor [Planctomyces limnophilus DSM 3776] gi|296015847|gb|ADG69086.1| ribosome recycling factor [Planctomyces limnophilus DSM 3776] Length = 186 Score = 117 bits (293), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 59/179 (32%), Positives = 108/179 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + ++RM L+ ++ LRTGR + S++D ++VE YGS P+ Q+A V+V EP+ + Sbjct: 7 LFDAEERMDKAAQVLQDQLVGLRTGRANASLVDSIRVEYYGSPTPIKQLATVSVPEPQQI 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D+ +++ + + I S++GL P +G+V+R+ VP + ERR +V AE ++ Sbjct: 67 MIKPFDQSILSEIGKAIQASDVGLAPNNDGRVIRLNVPPLSTERRKQIVARVKEMAEDAR 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +++RNIRRD H + K SED+ S + +Q++T +++ E K+KE+M Sbjct: 127 VAIRNIRRDANKHADTALKDKLMSEDIHESTKESVQELTKKYEGKVNTVAEAKEKEVME 185 >gi|256824967|ref|YP_003148927.1| ribosome recycling factor [Kytococcus sedentarius DSM 20547] gi|256688360|gb|ACV06162.1| ribosome recycling factor [Kytococcus sedentarius DSM 20547] Length = 186 Score = 117 bits (293), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 101/178 (56%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +M I +DM +RTGR M + V+ YG+ PL Q+A+ V E R + Sbjct: 7 LAEAQQKMDKAIEVAHEDMADIRTGRAHAGMFSKIMVDYYGAPTPLQQLASFQVPEARTI 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V +DK ++++E+ + ES+LG+NP +G +R +P TEERR +K+A E ++ Sbjct: 67 LVQPFDKSAMSAIEKALRESDLGVNPSNDGNQIRCVLPALTEERRKEYIKLAKGKGEDAR 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +S+RNIRR +H+ K K G+ ED A E +++ +T +++ + K+ E++ Sbjct: 127 VSLRNIRRAAKEHIDKLVKDGEIGEDEGARGEKELEALTKKHTDQVETILKAKETELL 184 >gi|320103139|ref|YP_004178730.1| ribosome recycling factor [Isosphaera pallida ATCC 43644] gi|319750421|gb|ADV62181.1| ribosome recycling factor [Isosphaera pallida ATCC 43644] Length = 186 Score = 117 bits (292), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 107/179 (59%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + ++RM ++S L + + +RTGR + ++D ++VE YG+ PL Q+AN++ EP+ + Sbjct: 7 LLDAEERMEKSVSLLSEQLKGVRTGRATTGLVDSIRVEYYGNSTPLKQLANLSTPEPQQI 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D++++ + + I S LGLNP+ + +V+RI VP + E+R LV AE+++ Sbjct: 67 LIRPFDQQILGDIIKAIQASELGLNPVSDNKVIRINVPSLSVEQRKKLVARVKDLAEEAR 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +S+R+IRRD H +S +ED A + +IQ +T ++ ++K EI+ Sbjct: 127 VSIRSIRRDANKHADQSMTDKILTEDDCAKCKEEIQNLTKKYEGKVNELADKKSAEILE 185 >gi|315604533|ref|ZP_07879596.1| ribosome recycling factor [Actinomyces sp. oral taxon 180 str. F0310] gi|315313545|gb|EFU61599.1| ribosome recycling factor [Actinomyces sp. oral taxon 180 str. F0310] Length = 185 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 59/178 (33%), Positives = 99/178 (55%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +D+M + + +RTGR + SM + + V+ YG+ P+ Q+A+ + E R + Sbjct: 6 LLEAEDKMDKAVDSASHEFANIRTGRATSSMFEQLMVDYYGAPTPMQQLASFQIPEARTV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +D+ + R + ES+LG+NP +G V+R+ +P TEERR VK A + AE + Sbjct: 66 LISPFDRTATQEIIRTLRESDLGVNPTDDGNVVRVVLPALTEERRKEYVKQAKSKAEDGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +SVR +RR D L + +K G+ SED A E + +T + ID K+ E++ Sbjct: 126 VSVRGVRRKAKDQLDRLKKDGEVSEDDTARAEKSLDAMTKAHTDKIDKMLATKESELL 183 >gi|255071971|ref|XP_002499660.1| ribosome recycling factor [Micromonas sp. RCC299] gi|226514922|gb|ACO60918.1| ribosome recycling factor [Micromonas sp. RCC299] Length = 299 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 67/180 (37%), Positives = 98/180 (54%), Gaps = 4/180 (2%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D + M I L++D+ LRTGR SP ML+ + V+AYG H PL + +VT P+ Sbjct: 122 FDPAAFEQLMESAIEALERDLGKLRTGRASPGMLENLVVQAYGDHTPLQHLGSVTARNPQ 181 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 L V ++D + A+V I +S LG NP +G L +PVPE + + + K+A E Sbjct: 182 TLAVMLYDASLKAAVAAAIRDSPLGFNPREDGDTLVVPVPEMNADVKREVAKMAAKAGET 241 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +KISVRN R+ GMD +K++ K ED E ++QK D+ +K K+K IM Sbjct: 242 AKISVRNARKKGMDAIKRA----KMPEDEAKRAEKEVQKSHDAFVKRCQDLTVAKEKAIM 297 >gi|229588806|ref|YP_002870925.1| ribosome recycling factor [Pseudomonas fluorescens SBW25] gi|259494551|sp|C3K5Z8|RRF_PSEFS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|229360672|emb|CAY47530.1| ribosome recycling factor [Pseudomonas fluorescens SBW25] Length = 185 Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 66/172 (38%), Positives = 97/172 (56%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM ++ L +RTG+ PS+L V V YGS P++ VAN+TV + R L V ++ Sbjct: 12 RMQKSLESLSHAFGQIRTGKAHPSILGSVMVPYYGSDTPISSVANITVKDSRTLQVVAFE 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + M+ +V++ I + L LNP G++L I +P TEE R K A + AE ++++VRNI Sbjct: 72 RNMLGAVDKAIQSAGLNLNPTNLGELLLISMPALTEETRKGFTKQARSAAEDARVAVRNI 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RRD + LKK K + SED DI K+T I EEK+K++M Sbjct: 132 RRDALGDLKKLVKDKEISEDEERRATADIDKLTKDAEAQITKATEEKEKDLM 183 >gi|303273418|ref|XP_003056070.1| ribosomal recycling factor, chloroplast precursor [Micromonas pusilla CCMP1545] gi|226462154|gb|EEH59446.1| ribosomal recycling factor, chloroplast precursor [Micromonas pusilla CCMP1545] Length = 245 Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 106/176 (60%), Gaps = 3/176 (1%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ DRM ++ ++ ++ T+RTGR + ++LD ++VE YGS PL +AN+T + + ++ Sbjct: 70 QSADDRMEKSVDSIRNNLNTVRTGRANAAILDRIEVEYYGSVTPLKSLANITTPDAQTII 129 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +DK ++ VE+ I S+L L P +G +R+ +P T ERR L K+ E K+ Sbjct: 130 IQPFDKNIIDDVEKAIMSSDLDLMPGNDGNCIRLNIPPLTAERRRDLAKLVSKLGEDGKV 189 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 ++RN+RRD + + K + SED + SLEN+++K+T ++D +K+ EI Sbjct: 190 ALRNVRRDTLRSIGKLKGY---SEDEIKSLENNVEKMTLKHTTDVDEVVRKKEDEI 242 >gi|293189848|ref|ZP_06608562.1| ribosome recycling factor [Actinomyces odontolyticus F0309] gi|292821263|gb|EFF80208.1| ribosome recycling factor [Actinomyces odontolyticus F0309] Length = 185 Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 59/178 (33%), Positives = 101/178 (56%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + + +RTGR + SM + + V+ YG+ P+ Q+A+ + E R + Sbjct: 6 LLEAEEKMDKAVEAASHEFSNIRTGRATSSMFEQLLVDYYGAPTPMQQLASFQIPEARTV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +D+ + R + ES+LG+NP +G V+R+ +P TEERR VK A + AE + Sbjct: 66 LISPFDRTATQEIIRTLRESDLGVNPTDDGNVVRVVLPALTEERRKEYVKQAKSKAEDGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +SVR +RR D L + +K G+ASED V E + +T + + ID K+ E++ Sbjct: 126 VSVRGVRRKAKDQLDRLKKDGEASEDDVERAEKQLDGLTKAHTEQIDKMLATKESELL 183 >gi|78778261|ref|YP_394576.1| ribosome recycling factor [Sulfurimonas denitrificans DSM 1251] gi|123549529|sp|Q30NU0|RRF_SULDN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|78498801|gb|ABB45341.1| ribosome recycling factor [Sulfurimonas denitrificans DSM 1251] Length = 185 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 58/172 (33%), Positives = 105/172 (61%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M +++ + +D TLRTG+V+ S+LD VK++ YG+ L+QV ++ V + ++++ W+ Sbjct: 12 KMKSSVNHMLRDFKTLRTGKVTTSVLDNVKIDYYGTLTALDQVGSILVADATTIIINPWE 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K ++ ++ I ++N+G P +G +++ P T E+R VK E +K++VRN Sbjct: 72 KNLLNIIDSAISKANIGATPNNDGSQIKLFFPAMTVEQRQESVKQMKGMGEHAKVAVRND 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 R++ D +KKS K + + D S +++IQKITD I IDS + K+ EI+ Sbjct: 132 RKNANDKIKKSEKDKEITADESKSAQDNIQKITDKYISEIDSILKTKEAEIL 183 >gi|170781205|ref|YP_001709537.1| ribosome recycling factor [Clavibacter michiganensis subsp. sepedonicus] gi|190360238|sp|B0REP7|RRF_CLAMS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|169155773|emb|CAQ00894.1| ribosome recycling factor [Clavibacter michiganensis subsp. sepedonicus] Length = 185 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 108/183 (59%), Gaps = 9/183 (4%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +DRMG + +K+D ++RTGR +P++ V VE YGS PL Q+A++ E R L Sbjct: 7 LADARDRMGKAVEAVKEDFGSVRTGRANPALFQKVMVEYYGSPTPLGQLASMNNPEARTL 66 Query: 67 VVSVWDKEMVASVERG-IHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 +V+ +DK + +E+ ++ NL +G+++R +PE TE+RR VK+ AE+ Sbjct: 67 IVTPYDKTALKEIEKALVNVPNLSATVGNDGEMVRFTLPELTEDRRKEFVKIVRGKAEEG 126 Query: 126 KISVRNIRR---DGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 ++SVRNIRR D +D LK G+ +D VA +E +++ +T + +D + K+ E Sbjct: 127 RVSVRNIRRRSKDELDALK-----GEVGDDEVARVEKELEALTKTHTDQVDDALKRKETE 181 Query: 183 IMH 185 ++ Sbjct: 182 LLE 184 >gi|77457331|ref|YP_346836.1| ribosome recycling factor [Pseudomonas fluorescens Pf0-1] gi|123605788|sp|Q3KHA9|RRF_PSEPF RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|77381334|gb|ABA72847.1| ribosome recycling factor [Pseudomonas fluorescens Pf0-1] Length = 185 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 64/177 (36%), Positives = 101/177 (57%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ K+RM ++ L + +RTG+ PS+L+ V V YG+ P+ QVAN+TV + R L Sbjct: 7 KDAKERMTKSVESLAHNFGRIRTGQAHPSILEGVMVPYYGADTPIKQVANITVKDARTLQ 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +++ M+ +V++ I + L LNP G++L I +P TEE R K A AE +++ Sbjct: 67 VVAFERNMLGAVDKAIGSAGLNLNPTNLGELLLISMPALTEETRRGFTKQARDVAEDARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +VRNIRRD LK K + SED +I +T + ID+ EK+K++M Sbjct: 127 AVRNIRRDANSSLKDLVKEKEISEDEERRAAGEIDDLTKKFVAEIDAKLAEKEKDLM 183 >gi|328955482|ref|YP_004372815.1| ribosome recycling factor [Coriobacterium glomerans PW2] gi|328455806|gb|AEB07000.1| ribosome recycling factor [Coriobacterium glomerans PW2] Length = 178 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 62/178 (34%), Positives = 99/178 (55%), Gaps = 3/178 (1%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 +I +M T++ LK + +RTGR + +L + ++ YG P+ QVA V V E +LV+ Sbjct: 4 DISAQMDKTLASLKHNFSKVRTGRANAGILSDISIDYYGVPTPITQVAAVKVPEAHLLVI 63 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 WD+ + ++ + I S+LG+ P +G V+R+P P TEERR LVK H AE +++S Sbjct: 64 EPWDRGITDAIVKAIAASDLGITPNSDGSVVRLPFPAPTEERRRELVKECHELAEHARVS 123 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +R IRR+ + + +ED V + IQK TD + ID + K+ E+M Sbjct: 124 IRGIRREAN---GAAERDENLTEDDVRRDQARIQKRTDEYVAKIDQMLKAKEAEVMEI 178 >gi|257894708|ref|ZP_05674361.1| ribosome recycling factor [Enterococcus faecium 1,231,408] gi|257831087|gb|EEV57694.1| ribosome recycling factor [Enterococcus faecium 1,231,408] Length = 155 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 53/135 (39%), Positives = 90/135 (66%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K++M L++++ +R GR + S+LD + V YG+ PLNQ+A++ + E R+L+++ Sbjct: 10 KEKMKKAAQNLQRELGQIRAGRANASLLDRITVNYYGAPTPLNQMASIQIPEARVLMITP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +DK ++ VE+ I S++G++P +G V+R+ +P+ TEERR L K AE +KI++R Sbjct: 70 FDKSILQDVEKAIMASDIGISPTNDGNVIRLVIPQLTEERRKELAKDVKKEAENAKIAIR 129 Query: 131 NIRRDGMDHLKKSRK 145 NIRRD +D KK +K Sbjct: 130 NIRRDAIDEYKKQQK 144 >gi|254457533|ref|ZP_05070961.1| ribosome recycling factor [Campylobacterales bacterium GD 1] gi|207086325|gb|EDZ63609.1| ribosome recycling factor [Campylobacterales bacterium GD 1] Length = 185 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 58/184 (31%), Positives = 110/184 (59%), Gaps = 2/184 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ D + +M +I +++D TLRTG+++ S+LD V+++ YG+ L+QV ++ Sbjct: 2 LNEIYDA--CEKKMKSSIEHMQRDFKTLRTGKITTSVLDNVRIDYYGTMTSLDQVGSIIA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + +VV+ W+K ++ ++E I ++N+G NP +G +++ P T E+R VK Sbjct: 60 TDATTIVVNPWEKNLLPAIESAISKANVGANPNNDGDQIKLFFPAMTVEQRKESVKQMKG 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E +K+S+RN R++ D +KK K + + D S +++IQKITD N + ++K+ Sbjct: 120 MGENAKVSLRNDRKNANDQIKKLEKDKEITADESKSAQDNIQKITDKFSANTEQILKDKE 179 Query: 181 KEIM 184 EI+ Sbjct: 180 AEIL 183 >gi|168031675|ref|XP_001768346.1| predicted protein [Physcomitrella patens subsp. patens] gi|162680524|gb|EDQ66960.1| predicted protein [Physcomitrella patens subsp. patens] Length = 192 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 64/171 (37%), Positives = 99/171 (57%), Gaps = 4/171 (2%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M ++ L ++ LRTGR +P MLD V V ++G PL+ VA V+V L V +D Sbjct: 23 MEAALNALSVELSKLRTGRATPGMLDHVNVMSHGVQTPLSHVAAVSVSNLETLTVMPYDT 82 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 MV VE+ I S L LNP+ EG+VLR+P+P+ T+E + K+ E +K+SVR R Sbjct: 83 SMVKEVEKAIRNSPLKLNPMAEGEVLRVPIPKLTKEHIQTMSKLVGKAGETAKLSVRRAR 142 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +D MD + K G S+D V E +++ +T +K+++ + K+KEI+ Sbjct: 143 KDAMDIISK----GGYSKDEVKRFEKEVEDVTKKYVKSVEEACKSKEKEIL 189 >gi|139439763|ref|ZP_01773154.1| Hypothetical protein COLAER_02185 [Collinsella aerofaciens ATCC 25986] gi|133774913|gb|EBA38733.1| Hypothetical protein COLAER_02185 [Collinsella aerofaciens ATCC 25986] Length = 178 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 61/165 (36%), Positives = 97/165 (58%), Gaps = 3/165 (1%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +NI M ++ LK + +RTGR + ++L + V+ YG P+ QVA V E ML+ Sbjct: 3 ENITAHMDKSLESLKHNFSKVRTGRANANILSDITVDYYGVPTPVTQVAAVKTPEAHMLL 62 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + WDK ++ ++ + I S+LG+ P +G V+R+P P TEERR LVK YAE++K+ Sbjct: 63 IEPWDKALINAIVKAIGASDLGITPNSDGTVVRLPFPAPTEERRRELVKECREYAEQAKV 122 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNI 172 S+RNIRRD + L++ + +ED V + +QK TD + + Sbjct: 123 SIRNIRRDFNNKLERDE---ELTEDDVRREQAKVQKHTDEYVAKV 164 >gi|154509155|ref|ZP_02044797.1| hypothetical protein ACTODO_01676 [Actinomyces odontolyticus ATCC 17982] gi|153798789|gb|EDN81209.1| hypothetical protein ACTODO_01676 [Actinomyces odontolyticus ATCC 17982] Length = 185 Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 101/178 (56%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + + +RTGR + +M + + V+ YG+ P+ Q+A+ + E R + Sbjct: 6 LLEAEEKMDKAVEAASHEFSNIRTGRATSAMFEQLLVDYYGAPTPMQQLASFQIPEARTV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +D+ + R + ES+LG+NP +G V+R+ +P TEERR VK A + AE + Sbjct: 66 LISPFDRTATQEIIRTLRESDLGVNPTDDGNVVRVVLPALTEERRKEYVKQAKSKAEDGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +SVR +RR D L + +K G+ASED V E + +T + + ID K+ E++ Sbjct: 126 VSVRGVRRKAKDQLDRLKKDGEASEDDVERAEKQLDGLTKAHTEQIDKMLATKESELL 183 >gi|32472787|ref|NP_865781.1| ribosome recycling factor [Rhodopirellula baltica SH 1] gi|32444024|emb|CAD73466.1| Ribosome recycling factor [Rhodopirellula baltica SH 1] Length = 200 Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 106/179 (59%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + ++RM +S L+ ++ +RTGR +P ++D +KVE YGS PL Q+A++ EP+ + Sbjct: 21 LMDAEERMDKAVSVLQNNLSGIRTGRANPGLVDSIKVEVYGSLTPLKQLASIGTPEPQQI 80 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D + +E+ I +LGLNP +G+V+R+ VP + E R +V AE++K Sbjct: 81 LIRPYDATTIKDIEKAIVAGDLGLNPQNDGRVIRLNVPPLSGEVRKKMVSRIKELAEEAK 140 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +S+RNIRRD + + K + +ED ++ +Q++T N++ + ++ E+M Sbjct: 141 VSIRNIRRDANKAAETAEKDKEMTEDDRDKTKDQVQELTKKAETNVNESAKAREAEVME 199 >gi|39932075|sp|Q7UTH0|RRF_RHOBA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor Length = 186 Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 106/179 (59%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + ++RM +S L+ ++ +RTGR +P ++D +KVE YGS PL Q+A++ EP+ + Sbjct: 7 LMDAEERMDKAVSVLQNNLSGIRTGRANPGLVDSIKVEVYGSLTPLKQLASIGTPEPQQI 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D + +E+ I +LGLNP +G+V+R+ VP + E R +V AE++K Sbjct: 67 LIRPYDATTIKDIEKAIVAGDLGLNPQNDGRVIRLNVPPLSGEVRKKMVSRIKELAEEAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +S+RNIRRD + + K + +ED ++ +Q++T N++ + ++ E+M Sbjct: 127 VSIRNIRRDANKAAETAEKDKEMTEDDRDKTKDQVQELTKKAETNVNESAKAREAEVME 185 >gi|323359725|ref|YP_004226121.1| ribosome recycling factor [Microbacterium testaceum StLB037] gi|323276096|dbj|BAJ76241.1| ribosome recycling factor [Microbacterium testaceum StLB037] Length = 184 Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 63/177 (35%), Positives = 100/177 (56%), Gaps = 9/177 (5%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM + K+D T+RTGR +P M V V+ YGS PL Q+A++ E R LV++ +D Sbjct: 12 RMDRAVEAAKEDFATVRTGRANPQMFQKVLVDYYGSPTPLAQLASLNNPEARTLVINPYD 71 Query: 73 KEMVASVERGIHE-SNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 K + ++E+ I + NLG+NP +G ++RI +PE TEERR VK+ E +K+ +RN Sbjct: 72 KSALKAIEQAIRDMPNLGVNPTNDGNIVRITMPELTEERRKEYVKLVRGKGEDAKVQIRN 131 Query: 132 IRR---DGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +RR D +D LK ED + E ++ +T + + ID + K+ E++ Sbjct: 132 LRRKAKDDLDALKSD-----VGEDELVRAEKELDGVTRAHVDQIDEALKRKEAELLE 183 >gi|148272566|ref|YP_001222127.1| ribosome recycling factor [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|190360237|sp|A5CQS7|RRF_CLAM3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|147830496|emb|CAN01431.1| frrA [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 185 Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 108/183 (59%), Gaps = 9/183 (4%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +DRMG + +K+D ++RTGR +P++ V VE YGS PL Q+A++ E R L Sbjct: 7 LADARDRMGKAVEAVKEDFGSVRTGRANPALFQKVMVEYYGSPTPLGQLASMNNPEARTL 66 Query: 67 VVSVWDKEMVASVERG-IHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 +V+ +DK + +E+ ++ NL +G+++R+ +PE TE+RR VK+ AE+ Sbjct: 67 IVTPYDKTALKEIEKALVNVPNLSATVGNDGEMVRLTLPELTEDRRKEFVKIVRGKAEEG 126 Query: 126 KISVRNIRR---DGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 ++SVRNIRR D +D LK G+ +D VA E +++ +T + +D + K+ E Sbjct: 127 RVSVRNIRRRSKDELDALK-----GEVGDDEVARGEKELESLTKTHTDQVDDALKRKETE 181 Query: 183 IMH 185 ++ Sbjct: 182 LLE 184 >gi|283778745|ref|YP_003369500.1| ribosome recycling factor [Pirellula staleyi DSM 6068] gi|283437198|gb|ADB15640.1| ribosome recycling factor [Pirellula staleyi DSM 6068] Length = 186 Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 59/178 (33%), Positives = 100/178 (56%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++++RM IS LK + +RTGR +P ++D ++VE YGS P+ +A+V EP+ + Sbjct: 7 LFDVEERMEKAISVLKGQLAGIRTGRANPGLVDSLRVEVYGSPTPMKSLASVGAPEPQQI 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +D + +E+ I S LG P +G+V+R+ VP T E R LV E++K Sbjct: 67 VIRPYDASTIKDIEKAIIASGLGFAPQNDGRVIRLNVPPLTTETRRKLVARIKELTEEAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +S+RN+RRDG ++ K SED ++ D+Q++T + ++ E+M Sbjct: 127 VSIRNVRRDGNKAAEQEEKDKLLSEDECKKVKEDVQELTKKYENTAGEMAKHREAEVM 184 >gi|315655036|ref|ZP_07907940.1| ribosome recycling factor [Mobiluncus curtisii ATCC 51333] gi|315490692|gb|EFU80313.1| ribosome recycling factor [Mobiluncus curtisii ATCC 51333] Length = 185 Score = 114 bits (285), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 60/178 (33%), Positives = 99/178 (55%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ K M +S + + ++RTGR + +M D + V+ YG+ PL Q+A+ + E R + Sbjct: 6 LKSAKTMMAKALSATQDEFASIRTGRANTAMFDGIMVDYYGAPTPLKQLASFNIPEARTV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V +DK + R I E++LG+NP +G+ +RI +P TEERR VK+A AE+ + Sbjct: 66 IVQPFDKSASQDIIRAIAEADLGVNPTDDGKTIRIVLPALTEERRKEYVKIAKTKAEEGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 SVR++RR D + K+ + ED + E ++ IT ID K+ E+M Sbjct: 126 QSVRSLRRKAKDEFEAMLKNKELGEDEIKRGEKELDSITKKFTDEIDQLLAAKESELM 183 >gi|327541582|gb|EGF28113.1| ribosome recycling factor [Rhodopirellula baltica WH47] Length = 179 Score = 114 bits (285), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 56/177 (31%), Positives = 105/177 (59%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 + ++RM +S L+ ++ +RTGR +P ++D +KVE YGS PL Q+A++ EP+ +++ Sbjct: 2 DAEERMDKAVSVLQNNLSGIRTGRANPGLVDSIKVEVYGSLTPLKQLASIGTPEPQQILI 61 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 +D + +E+ I +LGLNP +G+V+R+ VP + E R +V AE++K+S Sbjct: 62 RPYDATTIKDIEKAIVAGDLGLNPQNDGRVIRLNVPPLSGEVRKKMVSRIKELAEEAKVS 121 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +RNIRRD + + K + +ED ++ +Q++T N++ + ++ E+M Sbjct: 122 IRNIRRDANKAAETAEKDKEMTEDDRDKTKDQVQELTKKAETNVNESAKAREAEVME 178 >gi|308176749|ref|YP_003916155.1| ribosome-recycling factor [Arthrobacter arilaitensis Re117] gi|307744212|emb|CBT75184.1| ribosome-recycling factor [Arthrobacter arilaitensis Re117] Length = 185 Score = 114 bits (285), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 59/179 (32%), Positives = 99/179 (55%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++M TI K+D T+RTGR P M V V+ YGS PL Q+A+ V E R + Sbjct: 6 LAETAEKMERTIDAAKEDFATIRTGRAHPGMYSKVMVDYYGSPTPLQQLASFAVPEARTI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D + +E+ + + +G NP +G+++R+ +P TEERR VK+A A E ++ Sbjct: 66 TITPFDVTALREIEKALGDPEVGANPSSDGKMIRVVLPVLTEERRKEYVKLAKAKGEDAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +++RN RR D + K K G+ ED E D+ +T + ++D + K+ E++ Sbjct: 126 VALRNHRRKAKDTIDKLVKDGEIGEDEGTRAEKDLDALTKKHVDSVDEILKNKEAELLE 184 >gi|87310510|ref|ZP_01092639.1| Ribosome recycling factor [Blastopirellula marina DSM 3645] gi|87286731|gb|EAQ78636.1| Ribosome recycling factor [Blastopirellula marina DSM 3645] Length = 186 Score = 114 bits (284), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 57/175 (32%), Positives = 106/175 (60%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 +DRM I LK ++ +RTGR +P ++D ++VE YGS P+ Q+A+V+V EP L++ Sbjct: 11 EDRMEKAIEHLKHNLSGIRTGRANPGLVDSLRVEVYGSLQPIKQIASVSVPEPTQLLIRP 70 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +D + +E+ I S+LG+ P +G+V+R+ VP + E R LV +E++K+S+R Sbjct: 71 YDTGAIKDIEKAIVASDLGMAPQSDGRVIRLNVPALSTEVRKKLVSRIKELSEEAKVSIR 130 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 N+RRD + + K+ + ED+ ++N++Q++T + + + ++ E+M Sbjct: 131 NVRRDSNKSAETAEKNKEIGEDIRDDIKNEVQELTKKFEEKVAELAKTRETEVME 185 >gi|255071027|ref|XP_002507595.1| ribosomal recyclingfactor [Micromonas sp. RCC299] gi|226522870|gb|ACO68853.1| ribosomal recyclingfactor [Micromonas sp. RCC299] Length = 170 Score = 114 bits (284), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 98/172 (56%), Gaps = 3/172 (1%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M TI +++ T+RTGR SP +L+ + V+ YG+ PL +AN + + + +V+ +D+ Sbjct: 1 MEKTIETVREKFNTVRTGRASPKILNRINVDYYGTLAPLITIANASTPDSQTIVIQPFDR 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 ++ +ER I S+LGLNP +G +R+ +P T ERR L K+ E+ K+++RN+R Sbjct: 61 TIINDIERAIMLSDLGLNPSNDGACIRLSIPPLTAERRQELAKLVSKLGEEGKVALRNVR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 RD M + K SED V SLE I +T ++ + +EK+ +I Sbjct: 121 RDAMKSIGKVE---GVSEDDVKSLEEAIDTLTSDFVRKVGELVKEKEDDIFK 169 >gi|168705204|ref|ZP_02737481.1| Ribosome recycling factor [Gemmata obscuriglobus UQM 2246] Length = 186 Score = 114 bits (284), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 58/179 (32%), Positives = 101/179 (56%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ +DRM + + D+ +RTGR SP MLD ++V+ YG+ P+ VA+VT + + Sbjct: 7 LKDTEDRMEKALDVFRNDLKGMRTGRASPQMLDSLRVDNYGTMSPIRDVASVTCPDAATI 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ + E + +E+ I S+LGL P +G+V+R+ +P + ++R +V AE +K Sbjct: 67 VIKPYAAESLKEIEKAIRSSDLGLAPNNDGKVIRLTMPAMSGDQRKKIVAAVKKSAESAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +S RNIRRDG H + + K+ +ED + +Q + ID +K+KE++ Sbjct: 127 VSCRNIRRDGNKHFEDAEKAKTMTEDDRDKGKAKVQDLLKVYEGKIDDLANKKEKEVLE 185 >gi|313683630|ref|YP_004061368.1| ribosome recycling factor [Sulfuricurvum kujiense DSM 16994] gi|313156490|gb|ADR35168.1| ribosome recycling factor [Sulfuricurvum kujiense DSM 16994] Length = 185 Score = 113 bits (283), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 101/177 (57%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q +++M + + + TLRTGRV+ +LD V+VE YGS VPL+Q A+V + + Sbjct: 7 QFCEEKMQGSCDHMIHNFRTLRTGRVTTKILDNVRVENYGSMVPLDQAASVLATDATTIT 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S WDK M++ +E+ I ++++G+NP G +++ P T E+R K A AE +K+ Sbjct: 67 ISPWDKSMLSVIEKAIQKADIGVNPNNNGTDIKLFFPPMTVEQRQETAKKAKGMAEDAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 VRN R+ D +K K + D ++ +QKITD I I+ + K+++I+ Sbjct: 127 GVRNDRKKANDKIKVLEKDKLITADESKGAQDKVQKITDKYISKIEDLLKAKEQDIL 183 >gi|298346466|ref|YP_003719153.1| ribosome recycling factor [Mobiluncus curtisii ATCC 43063] gi|304389795|ref|ZP_07371754.1| ribosome recycling factor [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315657102|ref|ZP_07909986.1| ribosome recycling factor [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298236527|gb|ADI67659.1| ribosome recycling factor [Mobiluncus curtisii ATCC 43063] gi|304326971|gb|EFL94210.1| ribosome recycling factor [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315492205|gb|EFU81812.1| ribosome recycling factor [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 185 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 60/178 (33%), Positives = 99/178 (55%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ K M +S + + ++RTGR + +M D + V+ YG+ PL Q+A+ + E R + Sbjct: 6 LKSAKTMMTKALSATQDEFASIRTGRANTAMFDGIMVDYYGAPTPLKQLASFNIPEARTV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V +DK + R I E++LG+NP +G+ +RI +P TEERR VK+A AE+ + Sbjct: 66 IVQPFDKSASQDIIRAIAEADLGVNPTDDGKTIRIVLPALTEERRKEYVKIAKTKAEEGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 SVR++RR D + K+ + ED + E ++ IT ID K+ E+M Sbjct: 126 QSVRSLRRKAKDEFEAMLKNKELGEDEIKRGEKELDSITKKFTDEIDQLLAAKESELM 183 >gi|330807784|ref|YP_004352246.1| ribosome recycling factor [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375892|gb|AEA67242.1| ribosome recycling factor [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 185 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 63/177 (35%), Positives = 100/177 (56%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM ++ L + +RTG+ PS+L+ V V YGS P+ QVAN+TV + R L Sbjct: 7 KDAEQRMQKSLESLAHNFGRIRTGQAHPSILEGVMVPYYGSDTPIKQVANITVKDARTLQ 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +++ M+ +V++ I + L LNP G++L I +P TEE R K A AE +++ Sbjct: 67 VVAFERNMLGAVDKAIGSAGLNLNPTNLGELLLISMPALTEETRKGFTKQARDVAEDARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +VRNIRRD LK K + SED +I +T + ID+ +K+K++M Sbjct: 127 AVRNIRRDANSQLKDLVKEKEISEDEERRATGEIDDLTKKYVAKIDADLAQKEKDLM 183 >gi|116515085|ref|YP_802714.1| hypothetical protein BCc_145 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285519|sp|Q057S8|RRF_BUCCC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|116256939|gb|ABJ90621.1| ribosome recycling factor [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 185 Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 58/172 (33%), Positives = 102/172 (59%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M + K D+ +R R +P +LD + ++ YG+H L++++N+ + L +S++D Sbjct: 12 KMNKCVLNFKNDLNKIRANRATPELLDNIFIDYYGTHTALSKLSNIIIENNSTLKISLFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + SVE+ I SNLGLNPI +RI +P TE+RR +VK+ AE ++IS+RNI Sbjct: 72 ISIKNSVEKSIINSNLGLNPISSDSNIRIKIPALTEQRRKDIVKIIKNDAENTRISIRNI 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RR+ +K K + ++D+ ++ +IQ+ T+ IK I+ K+KE++ Sbjct: 132 RREANIQIKTLLKEKEINQDIEKQVKLEIQRYTNLFIKKINDILSIKEKELL 183 >gi|116787688|gb|ABK24606.1| unknown [Picea sitchensis] Length = 269 Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 65/172 (37%), Positives = 101/172 (58%), Gaps = 2/172 (1%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M I L +++ LRTGR S MLD + +E+ G PL+++A ++VL+ + L V+ +D Sbjct: 98 QMQAGIDALSRELSKLRTGRASAGMLDHIIIESDGVRTPLSRIAAISVLDSQTLSVTPYD 157 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 E + VER I S LGLNP +EGQ L +P+P T+E A+ K+ +E K S+R Sbjct: 158 LEAIKDVERAIVSSPLGLNPTLEGQRLVVPIPALTKEHTQAMSKLVSKASEDVKQSIRRA 217 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 R+ +D +KK+ S S+D V LE +I +T +K + + K+KEIM Sbjct: 218 RQKALDSIKKAVSS--MSKDDVKRLEKEIDDLTKKFVKTAEDMCKAKEKEIM 267 >gi|330968958|gb|EGH69024.1| ribosome recycling factor [Pseudomonas syringae pv. aceris str. M302273PT] Length = 161 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 61/155 (39%), Positives = 90/155 (58%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM ++ L +RTG+ PS+L V V YG+ PL+QVANVTV + R L Sbjct: 7 KDAQTRMQKSLESLTHAFTRIRTGKAHPSILGGVMVPYYGADTPLSQVANVTVKDSRTLQ 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +++ M+A+V++ I S LG NP G++L I +P TEE R K A AE +++ Sbjct: 67 VVAFERNMLAAVDKAIQSSGLGFNPTNLGELLLISMPALTEETRKGFTKQARDAAEDARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQ 162 +VRNIRRD + LK K + SED +D+Q Sbjct: 127 AVRNIRRDALSQLKDLVKEKEISEDEERRAADDVQ 161 >gi|91201172|emb|CAJ74232.1| similar to ribosome recycling factor (ribosome releasing factor) (RRF) [Candidatus Kuenenia stuttgartiensis] Length = 186 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 58/174 (33%), Positives = 103/174 (59%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K +M I+ L+ D+ +RTGR S +++ ++VE YG+ PL Q+A ++ + + +++ Sbjct: 11 KAKMEKVIAHLQDDLKGIRTGRASTGLVENIRVEYYGNPSPLKQLAVISTPDAQSILIKP 70 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +D +V+++E+ I +S++GLNP VE + LRI +P EERR L + E +K+S+R Sbjct: 71 YDTTIVSNIEKAIIQSDIGLNPSVEAKTLRIVIPPLNEERRKKLSVTVKDFGESTKVSLR 130 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 NIR+D K +K +ED V +++IQKI ++ + K +EI+ Sbjct: 131 NIRQDSNKQADKEKKENILTEDDVKRTKDEIQKIIKDFETKVNDLIKRKTEEIL 184 >gi|209554340|ref|YP_002284960.1| ribosome recycling factor [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|226749944|sp|B5ZC20|RRF_UREU1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|209541841|gb|ACI60070.1| ribosome recycling factor [Ureaplasma urealyticum serovar 10 str. ATCC 33699] Length = 183 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 63/184 (34%), Positives = 105/184 (57%), Gaps = 3/184 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 MN I I++ + ++ + + LRTGR +P++LD + V+ YGS P+NQ+AN++V Sbjct: 1 MNFKIYETKIREEFELVLKWMHNEFIKLRTGRATPAILDGILVDYYGSMTPINQLANISV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPR+L + +D+ + V I+ SNLG+NP V+ ++R+ TEE R L K A Sbjct: 61 PEPRVLAIKPYDRSSIKDVASAINASNLGVNPQVDVDIIRLTFAAPTEEVRKNLAKKAKQ 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E++KI VR+IR++ D KK+ + ED + ++ +T K I++ K+ Sbjct: 121 VGEEAKIRVRHIRQEAQDLFKKNSST---VEDDKKFFQTELDNLTKELNKEIEAVVSHKE 177 Query: 181 KEIM 184 K+IM Sbjct: 178 KDIM 181 >gi|327399655|ref|YP_004340524.1| Ribosome-recycling factor [Hippea maritima DSM 10411] gi|327182284|gb|AEA34465.1| Ribosome-recycling factor [Hippea maritima DSM 10411] Length = 188 Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 107/188 (56%), Gaps = 2/188 (1%) Query: 1 MNQVID--LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 M + +D + +KD M T+S KK + T++TGR S+ + +KVE+YG + L Q+A + Sbjct: 1 MEESVDKVITQMKDEMKKTLSSYKKYLTTVKTGRAHVSVFEGIKVESYGQQMQLKQLATI 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 + + +V+ WD ++ +E+ I ++N+G P +G++++I +P TEE R +VK+ Sbjct: 61 STPDAMTVVIQPWDVSIIKEIEKAILKANMGFTPQNDGKIIKINIPPMTEEDRKKVVKLL 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 +E K+++RN R+ + +K K SED E +++K D + K +D Sbjct: 121 KQESENYKVALRNARKKALKTIKDLEKEKIISEDESKRAEKEVKKALDDSSKKLDELMSN 180 Query: 179 KKKEIMHF 186 K+KEI++ Sbjct: 181 KEKEILNL 188 >gi|300743956|ref|ZP_07072976.1| ribosome recycling factor [Rothia dentocariosa M567] gi|311113206|ref|YP_003984428.1| ribosome recycling factor [Rothia dentocariosa ATCC 17931] gi|300380317|gb|EFJ76880.1| ribosome recycling factor [Rothia dentocariosa M567] gi|310944700|gb|ADP40994.1| ribosome recycling factor [Rothia dentocariosa ATCC 17931] Length = 185 Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 103/178 (57%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++M TI +K + +RTGRV+P++ + + YG+ PL Q+ + V + R + Sbjct: 6 LAEAGEKMDKTIEAIKTEFAKVRTGRVNPAIFSSITADYYGAPTPLQQLVSFNVEDARTV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + +D +A++E+ + +S+LG+NP +G +R+ +PE T ERR +K+ + AE+++ Sbjct: 66 KIVPFDVSALAAIEKAVRDSDLGVNPSNDGAAIRVVMPEMTSERRKEYIKLVNHKAEEAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +SVRN+RR + K K G+ ED A E ++ +T + ID ++ K+ E++ Sbjct: 126 VSVRNVRRHAKTVIDKLVKDGEIGEDDGARAEKELDALTKKHVDTIDELYKHKESELL 183 >gi|171920233|ref|ZP_02690622.2| ribosome recycling factor [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|171902628|gb|EDT48917.1| ribosome recycling factor [Ureaplasma parvum serovar 1 str. ATCC 27813] Length = 183 Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 63/184 (34%), Positives = 104/184 (56%), Gaps = 3/184 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 MN I I++ + ++ + + LRTGR +P++LD + V YGS +P+NQ+AN++V Sbjct: 1 MNFKIYETKIREEFELVLKWMHNEFIKLRTGRATPTILDGILVNYYGSMMPINQLANISV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPR+L + +D+ + + I+ SNLG+NP V+ ++R+ TEE R LVK A Sbjct: 61 PEPRVLAIKPYDRSSIKDIATAINASNLGVNPQVDVDIIRLTFAAPTEEVRKNLVKKAKQ 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E++KI VR+IR++ D K K ED + ++ +T K I++ K+ Sbjct: 121 VGEEAKIRVRHIRQEAQDLFK---KDSTTIEDDKKFFQTELDNLTKELNKEIETVVSHKE 177 Query: 181 KEIM 184 K+IM Sbjct: 178 KDIM 181 >gi|13358076|ref|NP_078350.1| ribosome releasing factor [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762287|ref|YP_001752597.1| ribosome recycling factor [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|183508475|ref|ZP_02689468.2| ribosome recycling factor [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701607|ref|ZP_02553656.2| ribosome recycling factor [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|22001956|sp|Q9PPX7|RRF_UREPA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|189044082|sp|B1AJF3|RRF_UREP2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|11277798|pir||F82882 ribosome releasing factor frr UU512 [similarity] - Ureaplasma urealyticum gi|6899513|gb|AAF30925.1|AE002149_10 ribosome releasing factor [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827864|gb|ACA33126.1| ribosome recycling factor [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|182675892|gb|EDT87797.1| ribosome recycling factor [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186700837|gb|EDU19119.1| ribosome recycling factor [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 183 Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 63/184 (34%), Positives = 104/184 (56%), Gaps = 3/184 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 MN I I++ + ++ + + LRTGR +P++LD + V YGS +P+NQ+AN++V Sbjct: 1 MNFKIYETKIREEFELVLKWMHNEFIKLRTGRATPAILDGILVNYYGSMMPINQLANISV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPR+L + +D+ + + I+ SNLG+NP V+ ++R+ TEE R LVK A Sbjct: 61 PEPRVLAIKPYDRSSIKDIATAINASNLGVNPQVDVDIIRLTFAAPTEEVRKNLVKKAKQ 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E++KI VR+IR++ D K K ED + ++ +T K I++ K+ Sbjct: 121 VGEEAKIRVRHIRQEAQDLFK---KDSTTIEDDKKFFQTELDNLTKELNKEIETVVSHKE 177 Query: 181 KEIM 184 K+IM Sbjct: 178 KDIM 181 >gi|269977913|ref|ZP_06184867.1| ribosome recycling factor [Mobiluncus mulieris 28-1] gi|306819219|ref|ZP_07452930.1| ribosome recycling factor [Mobiluncus mulieris ATCC 35239] gi|307700228|ref|ZP_07637269.1| ribosome recycling factor [Mobiluncus mulieris FB024-16] gi|269933879|gb|EEZ90459.1| ribosome recycling factor [Mobiluncus mulieris 28-1] gi|304648001|gb|EFM45315.1| ribosome recycling factor [Mobiluncus mulieris ATCC 35239] gi|307614610|gb|EFN93838.1| ribosome recycling factor [Mobiluncus mulieris FB024-16] Length = 185 Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 60/181 (33%), Positives = 101/181 (55%), Gaps = 6/181 (3%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ K +M + K + T+RTGR + +M D + VE YGS PL Q+A+ + E R + Sbjct: 6 LKDTKTKMQKAVEATKDEFATIRTGRANAAMFDGIVVEYYGSPTPLKQLASFNIPEARTV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D+ + I ES+LG+ P +G+ +R+ +P TE+RR VK A AE+ + Sbjct: 66 IIQPFDRNATQDIIHAISESDLGVTPTDDGKTIRVVLPALTEDRRKEYVKQAKTKAEEGR 125 Query: 127 ISVRNIRR---DGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +S+R IRR D M+ LKK + G ED V ++ +T +D+ E+K+ ++ Sbjct: 126 VSIRGIRRKAKDAMEALKKDKTLG---EDEVERGVKELDTVTKKFTDEVDTLLEDKETDL 182 Query: 184 M 184 M Sbjct: 183 M 183 >gi|171920586|ref|ZP_02695872.2| ribosome recycling factor [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|185179028|ref|ZP_02555297.2| ribosome recycling factor [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024068|ref|ZP_02569849.2| ribosome recycling factor [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518344|ref|ZP_02556270.2| ribosome recycling factor [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524301|ref|ZP_02557887.2| ribosome recycling factor [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867937|ref|ZP_03079935.1| ribosome recycling factor [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273305|ref|ZP_03205841.1| ribosome recycling factor [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225550912|ref|ZP_03771861.1| ribosome recycling factor [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551642|ref|ZP_03772588.1| ribosome recycling factor [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|171903292|gb|EDT49581.1| ribosome recycling factor [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184209122|gb|EDU06165.1| ribosome recycling factor [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188019107|gb|EDU57147.1| ribosome recycling factor [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188997968|gb|EDU67065.1| ribosome recycling factor [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659871|gb|EDX53251.1| ribosome recycling factor [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660414|gb|EDX53673.1| ribosome recycling factor [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198249825|gb|EDY74605.1| ribosome recycling factor [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225379457|gb|EEH01822.1| ribosome recycling factor [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225380066|gb|EEH02428.1| ribosome recycling factor [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 183 Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 63/184 (34%), Positives = 104/184 (56%), Gaps = 3/184 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 MN I I++ + ++ + + LRTGR +P++LD + V+ YGS P+NQ+AN++V Sbjct: 1 MNFKIYETKIREEFELVLKWMHNEFIKLRTGRATPAILDGILVDYYGSMTPINQLANISV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPR+L + +D+ + V I+ SNLG+NP V+ ++R+ TEE R L K A Sbjct: 61 PEPRVLAIKPYDRSSIKDVASAINASNLGVNPQVDVDIIRLTFAAPTEEVRKNLAKKAKQ 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E++KI VR+IR++ D KK + ED + ++ +T K I++ K+ Sbjct: 121 VGEEAKIRVRHIRQEAQDLFKKDSST---VEDDKKFFQTELDNLTKELNKEIEAVVSHKE 177 Query: 181 KEIM 184 K+IM Sbjct: 178 KDIM 181 >gi|197294561|ref|YP_001799102.1| ribosome recycling factor [Candidatus Phytoplasma australiense] gi|226703266|sp|B1VA77|RRF_PHYAS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|171853888|emb|CAM11850.1| Ribosome recycling factor [Candidatus Phytoplasma australiense] Length = 184 Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 104/177 (58%), Gaps = 4/177 (2%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 I+ +M + K+ + +RTG +P++L+ V + YGS PL +++++V E L + Sbjct: 12 IEKKMSQAQEVMLKNFLEIRTGYANPNILNKVNINYYGSQTPLKTLSSISVSEGTQLQIK 71 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 ++K ++ S+++ I S+LG+ P +G +LR+ P+ TEERR LVK +E++K++V Sbjct: 72 PYEKTLIPSIKKAILASDLGITPETDGVLLRLNFPKPTEERRKVLVKEVDKLSEQTKVAV 131 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RNIRRD D +KK ++D+ A IQ +TD +K I+ K KE++ F Sbjct: 132 RNIRRDANDKIKKL----ALTKDLEALYLEKIQILTDKNMKMIEKEANNKNKELLKF 184 >gi|227875940|ref|ZP_03994063.1| ribosome recycling factor [Mobiluncus mulieris ATCC 35243] gi|227843472|gb|EEJ53658.1| ribosome recycling factor [Mobiluncus mulieris ATCC 35243] Length = 185 Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 60/181 (33%), Positives = 101/181 (55%), Gaps = 6/181 (3%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ K +M + K + T+RTGR + +M D + VE YGS PL Q+A+ + E R + Sbjct: 6 LKDTKTKMQKAVEATKDEFATIRTGRANAAMFDGIVVEYYGSPTPLKQLASFNIPEARTV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D+ + I ES+LG+ P +G+ +R+ +P TE+RR VK A AE+ + Sbjct: 66 IIQPFDRNATQDIIHAISESDLGVTPTDDGKTIRVVLPALTEDRRKEYVKQAKTKAEEGR 125 Query: 127 ISVRNIRR---DGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +S+R IRR D M+ LKK + G ED V ++ +T +D+ E+K+ ++ Sbjct: 126 VSIRGIRRKAKDAMEALKKDKTLG---EDEVERGVKELDTVTKKFTDEVDTLLEDKETDL 182 Query: 184 M 184 M Sbjct: 183 M 183 >gi|309811476|ref|ZP_07705258.1| ribosome recycling factor [Dermacoccus sp. Ellin185] gi|308434527|gb|EFP58377.1| ribosome recycling factor [Dermacoccus sp. Ellin185] Length = 186 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 56/179 (31%), Positives = 101/179 (56%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M I K+D ++RTGR + +M + + V+ YG+ PL Q+A+ E R + Sbjct: 7 LLEAEEKMDKAIEATKEDFASIRTGRANAAMFNRLTVDYYGAPTPLQQLASFQTPEARTI 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +DK ++ +E+ + +S+LG+NP +G +R +P TEERR +K+A AE + Sbjct: 67 LIIPFDKSAISEIEKTLRDSDLGVNPSNDGNQIRCILPALTEERRKDYIKMAKDKAENGR 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +SVRN+RR + K K + ED A E D+ +T + +D+ + K+ E++ Sbjct: 127 VSVRNVRRKANQDIDKLVKDKEVGEDDGARAEKDLDAMTKKRVDTVDALLKGKEAELLE 185 >gi|323341770|ref|ZP_08082003.1| ribosome recycling factor [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464195|gb|EFY09388.1| ribosome recycling factor [Erysipelothrix rhusiopathiae ATCC 19414] Length = 181 Score = 111 bits (278), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 65/171 (38%), Positives = 98/171 (57%), Gaps = 3/171 (1%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M + I + + LR+GR + SML V ++ YGS P+ Q+A ++V+E R LV+ +D Sbjct: 12 MDEVIENFETRLGGLRSGRANVSMLYGVSIDYYGSATPIEQIAQISVVEGRQLVIKPFDP 71 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 + +E I+ NLGL +G V+RI VP+ TEE R + K + AE +K++ RN+R Sbjct: 72 SALKEIEHTINNGNLGLLAQNDGTVVRINVPQLTEETRKEVSKQVGSLAEDAKVAARNVR 131 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RD D +K ED L +D+QK+TD K ID+ ++K KEIM Sbjct: 132 RDLNDEIKNLE---DLPEDQEKRLLDDVQKLTDDITKKIDAISKDKVKEIM 179 >gi|159901963|gb|ABX10694.1| ribosome recycling factor [uncultured planctomycete 8FN] Length = 186 Score = 111 bits (278), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 58/179 (32%), Positives = 100/179 (55%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + ++RM + LK + +RTGR +P ++D ++V+ YGS P+ Q+A V EP + Sbjct: 7 LLDTEERMTKALDVLKNALSGIRTGRANPGLVDSIRVDVYGSPTPIKQIATVGAPEPTQI 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +D ++ +E+ I +LG NP +G+V+RI VP + + R +V +E +K Sbjct: 67 VIRPYDASIIKEIEKAIVAGDLGYNPQSDGRVIRINVPALSTDVRKKMVSRIKELSEDAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ISVRN+RRD + K SED +++++Q +T I + + K+KE+M Sbjct: 127 ISVRNVRRDSNKAADTAEKDKSISEDERDDIKDEVQTLTKQHEDEISAMAKAKEKEVME 185 >gi|66827879|ref|XP_647294.1| hypothetical protein DDB_G0268518 [Dictyostelium discoideum AX4] gi|60475777|gb|EAL73712.1| hypothetical protein DDB_G0268518 [Dictyostelium discoideum AX4] Length = 263 Score = 111 bits (278), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 60/179 (33%), Positives = 108/179 (60%), Gaps = 4/179 (2%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 +D+ ++ + TI ++ +++ +R GRV P +L+ + VE ++ L +A +T+ + Sbjct: 86 VDISSVSSQGDKTIEYVSRELGNIRFGRVGPELLERINVETPSGNLLLPHMAMITIKDSL 145 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 L ++++D ++++VER + S LGLNP +R+ +P+ T++ R L+K + +E Sbjct: 146 TLNITLYDSSLLSNVERALTNSGLGLNPQTFDTTIRVSLPKPTQDLRQKLIKQVNTISED 205 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +K+S+R R+DGMD LK+ K ++D +LE +IQKITD IK+I E K KEI Sbjct: 206 AKVSIRRHRKDGMDILKRY----KLTKDDEKTLEKNIQKITDDYIKSITKITETKLKEI 260 >gi|148910289|gb|ABR18224.1| unknown [Picea sitchensis] Length = 269 Score = 111 bits (278), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 65/172 (37%), Positives = 101/172 (58%), Gaps = 2/172 (1%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M I L +++ LRTGR S MLD + +E+ G PL+++A V+VL+ + L V+ +D Sbjct: 98 QMQAGIDALSRELSKLRTGRASAGMLDHIIIESDGVRTPLSRIAAVSVLDSQTLSVTPYD 157 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + + VER I S LGLNP +EGQ L +P+P T+E A+ K+ +E K S+R Sbjct: 158 LDAIKDVERAIVSSPLGLNPTLEGQRLVVPIPALTKEHTQAMSKLVSKASEDVKQSIRRA 217 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 R+ +D +KK+ S S+D V LE +I +T +K + + K+KEIM Sbjct: 218 RQKALDSIKKAVSS--MSKDDVKRLEKEIDDLTKKFVKTAEDMCKTKEKEIM 267 >gi|262340905|ref|YP_003283760.1| ribosome recycling factor [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272242|gb|ACY40150.1| ribosome recycling factor [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 184 Score = 110 bits (276), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 64/165 (38%), Positives = 100/165 (60%), Gaps = 5/165 (3%) Query: 21 LKKDMMTLRTGRVS-PSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASV 79 LK+++ +R G S S+L+ +K++ YGS L +VAN+TV++ + + WD+ +V+ + Sbjct: 22 LKEEIHRIRLGSKSVASILEKIKIKCYGSSFLLIEVANITVVDNMNITIHPWDRSIVSYI 81 Query: 80 ERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDH 139 ++ I ++NLG P +G+ + I +P TEE R L+K + E +KI +RN+R+ H Sbjct: 82 DKAIIDANLGFMPTNKGESIHIHLPIITEEGRKNLMKKIKSQTEHAKILIRNVRKKNNQH 141 Query: 140 LKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +KK K SED S EN IQKIT I ID FF K+KEI+ Sbjct: 142 IKKL----KISEDFSKSGENRIQKITSEYIHQIDDFFLYKEKEIL 182 >gi|255327231|ref|ZP_05368305.1| ribosome recycling factor [Rothia mucilaginosa ATCC 25296] gi|255295511|gb|EET74854.1| ribosome recycling factor [Rothia mucilaginosa ATCC 25296] Length = 185 Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 55/179 (30%), Positives = 102/179 (56%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++M TI K + +RTGRV+P++ + E YG+ PL Q+ + V + R + Sbjct: 6 LAEAGEKMEKTIEATKTEFAKVRTGRVNPAIFSGLTAEYYGAPTPLQQLVSFNVEDARTV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + +D +A++E+ + +S+LG+NP +G +R+ +PE T ERR K+ ++ AE+S+ Sbjct: 66 KIVPFDVTALAAIEKALRDSDLGVNPSNDGAAIRVVMPEMTAERRKEYTKLVNSKAEESR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +S+RN+RR + K K + ED A E ++ +T I +D+ ++ K+ E++ Sbjct: 126 VSIRNVRRHAKTAIDKLVKDSEIGEDEGARAEKELDALTKKHIDQVDALYKHKEAELLE 184 >gi|282850823|ref|ZP_06260197.1| ribosome recycling factor [Lactobacillus gasseri 224-1] gi|282557775|gb|EFB63363.1| ribosome recycling factor [Lactobacillus gasseri 224-1] Length = 155 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 57/144 (39%), Positives = 91/144 (63%), Gaps = 2/144 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 N+VI + KD M +I+ +K++ +R + S+L+ +KV+ YG PL Q+++V++ Sbjct: 3 NEVI--EKAKDNMKKSIAVFQKELGGIRAAVANASLLEGIKVDYYGVPTPLTQMSSVSIP 60 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 E R+L+V+ +DK + +E I S+LG+ P +G V+RI +P+ T ERR + K Sbjct: 61 EARVLMVTPYDKSSLDDIEHAILASDLGITPANDGTVIRIVIPQLTGERRQEIAKQVGKL 120 Query: 122 AEKSKISVRNIRRDGMDHLKKSRK 145 AEK KI+VRN+RRD MD LK+ K Sbjct: 121 AEKGKIAVRNVRRDAMDTLKRQEK 144 >gi|37498991|gb|AAQ91586.1| ribosome recycling factor [Helicobacter mustelae] Length = 139 Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 52/138 (37%), Positives = 85/138 (61%) Query: 36 SMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVE 95 ++LD VKV+ YG+ PLNQV +V + ++++ W+K ++ +ER I E+N+G+NP + Sbjct: 1 NILDNVKVDYYGTPTPLNQVGSVIAQDATTILITPWEKNLLKDIERAIQEANIGVNPNND 60 Query: 96 GQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVA 155 G+ +++ P T+E+R + K A EK+KI++RNIR+D + +KK K +ED Sbjct: 61 GETIKLFFPPMTQEQRKEIAKDTKAMGEKAKIAIRNIRQDSNNQIKKLEKDKNITEDESK 120 Query: 156 SLENDIQKITDSTIKNID 173 + IQK TD K ID Sbjct: 121 KAHDTIQKYTDEYAKKID 138 >gi|328768245|gb|EGF78292.1| hypothetical protein BATDEDRAFT_26860 [Batrachochytrium dendrobatidis JAM81] Length = 273 Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 64/172 (37%), Positives = 102/172 (59%), Gaps = 3/172 (1%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M + + L+KD+ +R GR +P++LD V+V+ G V L VA +TV + LV+ V D+ Sbjct: 104 MQNAVEKLRKDLGLIRMGRANPALLDSVRVKHQGKSVALVDVAQITVKDAHTLVIVVSDE 163 Query: 74 EMVASVERGIHESNLGLNP-IVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 ++V+ VE+ + ++NLGLNP + L++PVP +E R ++K AE ++ +R+ Sbjct: 164 QLVSVVEKAVRDANLGLNPQSLPPSSLKVPVPRMAKEFRETIIKNIGRIAEACRVRIRSA 223 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 R D LK R S K + D LE DIQ++TD IK+ D+ K+KEI+ Sbjct: 224 RADARTALK--RTSLKPNSDQSRMLEKDIQQLTDKYIKDTDAAVLAKEKEIV 273 >gi|296129334|ref|YP_003636584.1| ribosome recycling factor [Cellulomonas flavigena DSM 20109] gi|296021149|gb|ADG74385.1| ribosome recycling factor [Cellulomonas flavigena DSM 20109] Length = 185 Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 61/179 (34%), Positives = 108/179 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K+D +RTGR + +M + V+ YG+ PL Q+A+ V+E R + Sbjct: 6 LLEAEEKMDKAVEVAKEDFAAIRTGRANAAMFAKIFVDYYGAPTPLQQLASFNVVEARTI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +VS +DK ++E+ + +S+LG+NP +G V+R+ +P T ERR VK+A + AE ++ Sbjct: 66 LVSPFDKSSTTAIEKALRDSDLGVNPTNDGNVVRVVLPALTAERRKDFVKLAKSKAEDAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ISVR++RR + L + K G+A ED VA E +++ +T ++ +D K+ E++ Sbjct: 126 ISVRSVRRRAKEELDRIAKDGEAGEDEVARAEKELEVLTKKHVELVDQLLASKESELLE 184 >gi|51971543|dbj|BAD44436.1| putative ribosome recycling factor [Arabidopsis thaliana] Length = 267 Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 63/171 (36%), Positives = 100/171 (58%), Gaps = 2/171 (1%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M I L +D+ LRTGR +P MLD + VE G +PLN +A V+VL+P+ L V+ +D Sbjct: 96 QMEAAIDALSRDLTKLRTGRAAPGMLDHIVVETGGVKMPLNHLALVSVLDPKTLSVNPYD 155 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + V +E+ I S LGLNP ++GQ L +P T+E A+ K+ +E K S+R Sbjct: 156 PDTVKELEKAIVASPLGLNPKLDGQRLVASIPALTKEHIQAMCKIVTKSSEVVKQSIRRA 215 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 R+ +D +KK+ S +D V LE ++ ++T +K+ + + K+KEI Sbjct: 216 RQKALDTIKKAGSS--LPKDEVKRLEKEVDELTKKFVKSAEDMCKSKEKEI 264 >gi|42563413|ref|NP_186829.3| ribosome recycling factor family protein / ribosome releasing factor family protein [Arabidopsis thaliana] gi|34146850|gb|AAQ62433.1| At3g01800 [Arabidopsis thaliana] gi|51970776|dbj|BAD44080.1| putative ribosome recycling factor [Arabidopsis thaliana] gi|62319213|dbj|BAD94407.1| putative ribosome recycling factor [Arabidopsis thaliana] gi|332640195|gb|AEE73716.1| ribosome recycling factor [Arabidopsis thaliana] Length = 267 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 63/171 (36%), Positives = 100/171 (58%), Gaps = 2/171 (1%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M I L +D+ LRTGR +P MLD + VE G +PLN +A V+VL+P+ L V+ +D Sbjct: 96 QMEAAIDALSRDLTKLRTGRAAPGMLDHIVVETGGVKMPLNHLALVSVLDPKTLSVNPYD 155 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + V +E+ I S LGLNP ++GQ L +P T+E A+ K+ +E K S+R Sbjct: 156 PDTVKELEKAIVASPLGLNPKLDGQRLVASIPALTKEHIQAMCKIVTKSSEVVKQSIRRA 215 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 R+ +D +KK+ S +D V LE ++ ++T +K+ + + K+KEI Sbjct: 216 RQKALDTIKKAGSS--LPKDEVKRLEKEVDELTKKFVKSAEDMCKSKEKEI 264 >gi|255536967|ref|XP_002509550.1| ribosome recycling factor, putative [Ricinus communis] gi|223549449|gb|EEF50937.1| ribosome recycling factor, putative [Ricinus communis] Length = 262 Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 64/171 (37%), Positives = 101/171 (59%), Gaps = 2/171 (1%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M I L +++ LRTGR S MLD + VE G +PLN++A V V++P+ L V+ +D Sbjct: 91 QMEAAIVSLSRELTKLRTGRASAGMLDHIIVETDGVKMPLNRLAVVAVMDPKTLSVNPYD 150 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 MV+++E+ I S LGLNP V+G+ L +P T+E A+ KV E+ K SVR Sbjct: 151 PNMVSALEKAIVSSPLGLNPRVDGERLIASIPPLTKEHMQAMCKVVGKSCEEVKQSVRRA 210 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 R+ +D +KK+ S+D V LE ++ ++T +K+ + + K+KEI Sbjct: 211 RQKALDTIKKA--GSNLSKDDVKRLEKEVDELTKKFVKSAEDICKAKEKEI 259 >gi|15606111|ref|NP_213488.1| ribosome recycling factor [Aquifex aeolicus VF5] gi|3914876|sp|O66928|RRF_AQUAE RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|14277735|pdb|1GE9|A Chain A, Solution Structure Of The Ribosome Recycling Factor gi|2983294|gb|AAC06886.1| ribosome recycling factor [Aquifex aeolicus VF5] Length = 184 Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 64/171 (37%), Positives = 107/171 (62%), Gaps = 4/171 (2%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M + + K ++ LRT R S ++++ +KVE YGS VP+ Q+ ++V E +V+ VWD+ Sbjct: 16 MKKAVEYYKNEIAGLRTSRASTALVEEIKVEYYGSKVPIKQLGTISVPEHNQIVIQVWDQ 75 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 V ++E+ I E L LNP V+G V+R+ +P TEERR LV++ H E++++ VRN+R Sbjct: 76 NAVPAIEKAIREE-LNLNPTVQGNVIRVTLPPLTEERRRELVRLLHKITEEARVRVRNVR 134 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 R+ + +++ G + ++ +LE +QK+TD I I+ E K+KEIM Sbjct: 135 REAKEMIEEL--EGISEDEKKRALER-LQKLTDKYIDEINKLMEAKEKEIM 182 >gi|197127175|gb|ACH43673.1| putative mitochondrial ribosome recycling factor isoform 1 [Taeniopygia guttata] Length = 259 Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 61/182 (33%), Positives = 99/182 (54%), Gaps = 3/182 (1%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +I+L+ + M I LK+D + R SP LD + V PLNQ+ ++ P Sbjct: 79 IINLEETNEDMQAVIEALKEDFSRNLSVRTSPGALDHITVMTKDGKFPLNQLGQISQKSP 138 Query: 64 RMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 ++++V++ E A+ + I ES + LNP V+G V+R+PVP+ T E R +L K+A + Sbjct: 139 QLMIVNMTSFPESTAAAAKAIRESGMNLNPEVDGTVIRVPVPKVTREHRESLAKLAKQFT 198 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 KSK ++R +R + +KKS+ K SED + LE IQ++ D +D K KE Sbjct: 199 NKSKEALRKVRSKSITQVKKSK--NKVSEDTIWLLEKQIQQMADEAATEMDKLLAAKTKE 256 Query: 183 IM 184 ++ Sbjct: 257 LL 258 >gi|115495125|ref|NP_001069775.1| ribosome-recycling factor, mitochondrial precursor [Bos taurus] gi|122142430|sp|Q0VCQ4|RRFM_BOVIN RecName: Full=Ribosome-recycling factor, mitochondrial; Short=RRF; AltName: Full=Ribosome-releasing factor, mitochondrial; Flags: Precursor gi|111305001|gb|AAI20055.1| Mitochondrial ribosome recycling factor [Bos taurus] Length = 262 Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 60/182 (32%), Positives = 104/182 (57%), Gaps = 3/182 (1%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +I+L+ + + M I LK + R SP LD + V +PLNQ++ +++ P Sbjct: 82 IINLEEVDEEMKSVIEALKDNFNKTVNIRTSPGALDNITVVTADGKLPLNQISQISMKSP 141 Query: 64 RMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 ++++V++ E A+ + I ES + LNP VEG ++R+P+P+ T E R LVK+A Sbjct: 142 QLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPKVTREHREMLVKLAKQNT 201 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 K+K S+R +R + ++ +KKS+ KASED + +E I ++ D T+ +D K KE Sbjct: 202 NKAKDSLRKVRTNAINKVKKSK--DKASEDTIRLIEKQISQMADDTVAELDRHLAVKTKE 259 Query: 183 IM 184 ++ Sbjct: 260 LL 261 >gi|39938654|ref|NP_950420.1| ribosome recycling factor [Onion yellows phytoplasma OY-M] gi|47116996|sp|P61308|RRF_ONYPE RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|39721763|dbj|BAD04253.1| ribosome recycling factor [Onion yellows phytoplasma OY-M] Length = 184 Score = 107 bits (267), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 104/178 (58%), Gaps = 4/178 (2%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++ +M + K+ +RTG +P++LD + V YG+ L +A+++V E L Sbjct: 9 LASLETKMTQAQEVMLKNFCDIRTGTANPNILDKITVNYYGAPTFLKTLASISVSEGNQL 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + +D ++ ++++ + SNLG+ P +G V+R+ P+ TEERR AL+K AEK+K Sbjct: 69 NIKPYDSTLIPNIKKVLLASNLGITPQTDGLVVRLVFPKPTEERRKALMKEVEQLAEKTK 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++RN+RR+G D +KK + ++D+ N IQ +TD IK I+ K E++ Sbjct: 129 VAIRNVRREGNDKIKKV----ELTKDLETFYLNQIQTLTDKNIKLIEKHTTTKNTELL 182 >gi|260362405|ref|ZP_05775360.1| ribosome recycling factor [Vibrio parahaemolyticus K5030] gi|308113970|gb|EFO51510.1| ribosome recycling factor [Vibrio parahaemolyticus K5030] Length = 124 Score = 107 bits (267), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 54/123 (43%), Positives = 77/123 (62%) Query: 64 RMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAE 123 R L ++V+DKE+ VE+ I S+LGLNP+ G ++R+P+P TEERR LVK+ AE Sbjct: 2 RTLAITVFDKELTQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAE 61 Query: 124 KSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +++VRNIRRD + LK K + SED + +IQK+TD +K ID K+KE+ Sbjct: 62 GGRVAVRNIRRDANNDLKALLKDKEISEDEDRKAQEEIQKLTDVAVKKIDEVLAAKEKEL 121 Query: 184 MHF 186 M Sbjct: 122 MEV 124 >gi|270643372|ref|ZP_06222161.1| ribosome recycling factor [Haemophilus influenzae HK1212] gi|270317279|gb|EFA28844.1| ribosome recycling factor [Haemophilus influenzae HK1212] Length = 127 Score = 107 bits (267), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 55/127 (43%), Positives = 80/127 (62%) Query: 56 ANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALV 115 ANV + R L V+V+D+ ++++VE+ I S+LGLNP G +RIP+P TEERR L+ Sbjct: 1 ANVVAEDARTLAVTVFDRSLISAVEKAILTSDLGLNPSSAGTTIRIPLPPLTEERRRDLI 60 Query: 116 KVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSF 175 K+ E+ K++VRN+RRD D +K K + SE+ E +IQKITD IK +D Sbjct: 61 KIVKGEGEQGKVAVRNVRRDANDKIKALLKDKEISENEQHKAEEEIQKITDIYIKKVDEV 120 Query: 176 FEEKKKE 182 +K+KE Sbjct: 121 LADKEKE 127 >gi|308806109|ref|XP_003080366.1| COG0233: Ribosome recycling factor (ISS) [Ostreococcus tauri] gi|116058826|emb|CAL54533.1| COG0233: Ribosome recycling factor (ISS) [Ostreococcus tauri] Length = 529 Score = 107 bits (266), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 61/161 (37%), Positives = 87/161 (54%), Gaps = 4/161 (2%) Query: 24 DMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGI 83 D+ LRT R S M+D + V+ YG+ PL+ VA +T + L V+++D SVE+ I Sbjct: 77 DLSHLRTARASEGMIDHIIVDVYGAPTPLSHVATITAPNAQTLSVTLFDPSTKPSVEKAI 136 Query: 84 HESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKS 143 S LGL P L +P+P T++ R + K+AH E +KI+ RNIR + H+K++ Sbjct: 137 MNSPLGLVPRATSDGLIVPIPAMTQDTRKEVCKLAHKLGETAKIAARNIRHKALKHIKRA 196 Query: 144 RKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ASED LE +Q + D T I S K KEIM Sbjct: 197 ----AASEDEQKRLEKALQAVADDTASKIASRVAAKDKEIM 233 >gi|283458519|ref|YP_003363147.1| ribosome recycling factor [Rothia mucilaginosa DY-18] gi|283134562|dbj|BAI65327.1| ribosome recycling factor [Rothia mucilaginosa DY-18] Length = 203 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 100/178 (56%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++M TI K + +RTGRV+P++ + E YG+ PL Q+ + V + R + Sbjct: 24 LAEAGEKMEKTIEATKTEFAKVRTGRVNPAIFSGLTAEYYGAPTPLQQLVSFNVEDARTV 83 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + +D +A++E+ + +S+LG+NP +G +R+ +PE T ERR K+ + AE+++ Sbjct: 84 KIVPFDVTALAAIEKALRDSDLGVNPSNDGAAIRVVMPEMTAERRKEYTKLVNHKAEEAR 143 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 IS+RN+RR + K K + ED A E ++ T I +D+ ++ K+ E++ Sbjct: 144 ISIRNVRRHAKTAIDKLVKDSEIGEDEGARAEKELDAQTKKHIDQVDALYKHKEAELL 201 >gi|70728561|ref|YP_258310.1| ribosome recycling factor [Pseudomonas fluorescens Pf-5] gi|85543002|sp|Q4KHH3|RRF_PSEF5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|68342860|gb|AAY90466.1| ribosome recycling factor [Pseudomonas fluorescens Pf-5] Length = 185 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 63/177 (35%), Positives = 99/177 (55%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ L +RTG+ PS+L V V YG+ PL+ VANVTV + + L Sbjct: 7 KDAQERMKKSLESLAHAFGQIRTGKAHPSILGSVMVPYYGTDTPLSGVANVTVKDSQTLQ 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +++ M+ ++++ I + L LNP G++L I + TEE R K A A AE +++ Sbjct: 67 VVPFERNMLGAIDKAIGSAGLNLNPTNLGELLLIKMAPLTEETRKGFTKQARAAAEDARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +VRNIRRD + LKK K + SED +I K+ I EEK+K++M Sbjct: 127 AVRNIRRDALGELKKLTKDKEISEDEERRGSAEIDKLIKDFEAQIAKATEEKEKDLM 183 >gi|291408419|ref|XP_002720540.1| PREDICTED: mitochondrial ribosome recycling factor [Oryctolagus cuniculus] Length = 262 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 61/182 (33%), Positives = 104/182 (57%), Gaps = 3/182 (1%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +I+L+++ + M + LK + R SP LD + V + LNQ++ +++ P Sbjct: 82 IINLEDVDEDMKSVLEALKDNFNKTLNIRTSPGSLDQITVVTADGKLALNQISQISMKSP 141 Query: 64 RMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 ++++V++ E A+ + I ES + LNP VEG ++R+P+P+ T E R LVK+A Sbjct: 142 QLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPKVTREHREMLVKLAKQNT 201 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 K+K S+R +R + M+ +KKS+ KASED V +E I ++ D TI +D K KE Sbjct: 202 NKAKDSLRRVRTNAMNKVKKSK--DKASEDTVRLIEKQISQMADDTIAELDRHLAVKTKE 259 Query: 183 IM 184 ++ Sbjct: 260 LL 261 >gi|224073899|ref|XP_002189665.1| PREDICTED: mitochondrial ribosome recycling factor [Taeniopygia guttata] Length = 259 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 60/182 (32%), Positives = 99/182 (54%), Gaps = 3/182 (1%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +I+L+ + M I LK+D + R SP LD + V PLNQ+ ++ P Sbjct: 79 IINLEETNEDMQAVIEALKEDFSRNLSVRTSPGALDHITVMTKDGKFPLNQLGQISQKSP 138 Query: 64 RMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 ++++V++ E A+ + I ES + LNP V+G V+R+PVP+ T E R +L K+A + Sbjct: 139 QLMIVNMTSFPESTAAAAKAIRESGMNLNPEVDGTVIRVPVPKVTREHRESLAKLAKQFT 198 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 KSK ++R +R + +KKS+ K SED + LE IQ++ D +D K K+ Sbjct: 199 NKSKEALRKVRSKSITQVKKSK--NKVSEDTIWLLEKQIQQMADEAATEMDKLLAAKTKK 256 Query: 183 IM 184 ++ Sbjct: 257 LL 258 >gi|149738437|ref|XP_001501480.1| PREDICTED: similar to mitochondrial ribosome recycling factor [Equus caballus] Length = 336 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 60/182 (32%), Positives = 102/182 (56%), Gaps = 3/182 (1%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +I L+ + + M + LK + R SP LD + V + LNQ+ +++ P Sbjct: 156 IISLEEVDEEMKSVMEALKDNFNKTVNIRTSPGSLDHITVVTADGKLALNQIGQISMKSP 215 Query: 64 RMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 ++++V++ E A+ + I ES + LNP VEG ++R+P+P+ T E R LVK+A Sbjct: 216 QLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPKVTREHREMLVKLAKQNT 275 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 K+K S+R +R + M+ LKKS+ KASED + +E I ++ D T+ +D + K KE Sbjct: 276 NKAKDSLRKVRTNAMNKLKKSK--DKASEDTIRLIEKQISQMADDTVAELDRYLAVKTKE 333 Query: 183 IM 184 ++ Sbjct: 334 LL 335 >gi|281205054|gb|EFA79247.1| hypothetical protein PPL_07665 [Polysphondylium pallidum PN500] Length = 369 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 59/180 (32%), Positives = 107/180 (59%), Gaps = 4/180 (2%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 +DL +K T+ FL++ +R GR P +LDL+ VE + +NQ+A VT+ +P Sbjct: 190 VDLNTMKSSCDATVDFLRRGFGNIRCGRTGPELLDLITVETPNGPMSMNQIAMVTIKDPL 249 Query: 65 MLVVSVWDKEMVASVERGIHE-SNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAE 123 L ++++D ++ VE+ + S+LG++P ++ Q +++ +P+ T+E R L+K + +E Sbjct: 250 TLHLTLFDPSLLKHVEKALRSRSDLGMSPQIQDQFIKLTLPKPTQELRQNLIKSVNNLSE 309 Query: 124 KSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 ++K+S+R R++GMD +KK K K E ++ ++QKITD I + + K KEI Sbjct: 310 QAKVSIRRHRKEGMDLIKKKYKLIKDDE---QKIDKNVQKITDDYIATLTKLTDAKIKEI 366 >gi|298714900|emb|CBJ27656.1| ribosome recycling factor [Ectocarpus siliculosus] Length = 271 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 70/185 (37%), Positives = 102/185 (55%), Gaps = 3/185 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 ++ + + K R + L +D LR G+ P MLD V+VE+YGS L VA ++ Sbjct: 87 LDDIAGIPESKARFDKVLQGLTRDFQGLRGGKTDPGMLDNVRVESYGSMTNLASVAQASM 146 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQ-VLRIPVPETTEERRLALVKVAH 119 P+++V+SV+D M VE I E +GLNP EGQ + +P+P+ T+E R A+ KVA Sbjct: 147 KGPQLIVLSVYDPGMTKVVEDAIRECGMGLNPNSEGQGQVHVPIPKPTKESREAVAKVAA 206 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 +AEKSK+ VR IR +D +KK + S ED V +I + T I E+K Sbjct: 207 KHAEKSKVVVRGIRHKILDQIKKKKDS--FPEDDVHMRIKEIDQCTKDAEAGIAGMLEKK 264 Query: 180 KKEIM 184 K EI+ Sbjct: 265 KAEIL 269 >gi|55958151|emb|CAI14713.1| mitochondrial ribosome recycling factor [Homo sapiens] Length = 218 Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 59/182 (32%), Positives = 102/182 (56%), Gaps = 3/182 (1%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +I+L+ + + M I LK + R SP LD + V + LNQ++ +++ P Sbjct: 38 IINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMKSP 97 Query: 64 RMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 ++++V++ E A+ + I ES + LNP VEG ++R+P+P+ T E R LVK+A Sbjct: 98 QLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPQVTREHREMLVKLAKQNT 157 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 K+K S+R +R + M+ LKKS+ + SED + +E I ++ D T+ +D K KE Sbjct: 158 NKAKDSLRKVRTNSMNKLKKSKDT--VSEDTIRLIEKQISQMADDTVAELDRHLAVKTKE 215 Query: 183 IM 184 ++ Sbjct: 216 LL 217 >gi|114626542|ref|XP_001135833.1| PREDICTED: similar to Mitochondrial ribosome recycling factor isoform 2 [Pan troglodytes] Length = 218 Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 59/182 (32%), Positives = 102/182 (56%), Gaps = 3/182 (1%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +I+L+ + + M I LK + R SP LD + V + LNQ++ +++ P Sbjct: 38 IINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMKSP 97 Query: 64 RMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 ++++V++ E A+ + I ES + LNP VEG ++R+P+P+ T E R LVK+A Sbjct: 98 QLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPQVTREHREMLVKLAKQNT 157 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 K+K S+R +R + M+ LKKS+ + SED + +E I ++ D T+ +D K KE Sbjct: 158 NKAKDSLRKVRTNSMNKLKKSKYT--VSEDTIRLIEKQISQMADDTVAELDRHLAVKTKE 215 Query: 183 IM 184 ++ Sbjct: 216 LL 217 >gi|297270215|ref|XP_002800031.1| PREDICTED: ribosome-recycling factor, mitochondrial isoform 2 [Macaca mulatta] Length = 262 Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 59/182 (32%), Positives = 101/182 (55%), Gaps = 3/182 (1%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +I+L+ + + M I LK + R SP LD + V + LNQ+ +++ P Sbjct: 82 IINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQIGQISMKSP 141 Query: 64 RMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 ++++V++ E A+ + I ES + LNP VEG ++R+P+P+ T E R LVK+A Sbjct: 142 QLILVNMASFPECTAAAIKAIRESGMNLNPEVEGMLIRVPIPQVTREHRETLVKLAKQNT 201 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 K+K S+R +R + M+ LKKS+ + SED + +E I ++ D T+ +D K KE Sbjct: 202 NKAKDSLRKVRTNAMNKLKKSKDT--VSEDTIRLVEKQISQMADDTVAELDRHLAVKTKE 259 Query: 183 IM 184 ++ Sbjct: 260 LL 261 >gi|85057831|ref|YP_456747.1| ribosome recycling factor [Aster yellows witches'-broom phytoplasma AYWB] gi|123518096|sp|Q2NIS5|RRF_AYWBP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|84789936|gb|ABC65668.1| ribosome recycling factor [Aster yellows witches'-broom phytoplasma AYWB] Length = 184 Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 100/167 (59%), Gaps = 4/167 (2%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++ +M + K+ +RTG +P++LD + V YG+ L +A+++V E + Sbjct: 9 LASLEIKMTQAQELMLKNFCDIRTGTANPNILDKITVNYYGATTFLKTLASISVSEGNQI 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + +D ++ ++++ + SNLG+ P +G V+R+ P+ TEERR AL+K +EK+K Sbjct: 69 NIKPYDSNLIPNIKKVLLASNLGITPQTDGVVVRLVFPKPTEERRKALMKEVEQLSEKTK 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNID 173 +++RN+RR+G D +KK + ++D+ N IQ +TD IK ID Sbjct: 129 VAIRNVRREGNDKIKKV----ELTKDLETFYLNQIQTLTDKNIKLID 171 >gi|20270317|ref|NP_620132.1| ribosome-recycling factor, mitochondrial isoform 1 precursor [Homo sapiens] gi|62901043|sp|Q96E11|RRFM_HUMAN RecName: Full=Ribosome-recycling factor, mitochondrial; Short=RRF; AltName: Full=Ribosome-releasing factor, mitochondrial; Flags: Precursor gi|15341771|gb|AAH13049.1| Mitochondrial ribosome recycling factor [Homo sapiens] gi|55958149|emb|CAI14711.1| mitochondrial ribosome recycling factor [Homo sapiens] gi|158256638|dbj|BAF84292.1| unnamed protein product [Homo sapiens] gi|312150650|gb|ADQ31837.1| mitochondrial ribosome recycling factor [synthetic construct] Length = 262 Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 59/182 (32%), Positives = 102/182 (56%), Gaps = 3/182 (1%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +I+L+ + + M I LK + R SP LD + V + LNQ++ +++ P Sbjct: 82 IINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMKSP 141 Query: 64 RMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 ++++V++ E A+ + I ES + LNP VEG ++R+P+P+ T E R LVK+A Sbjct: 142 QLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPQVTREHREMLVKLAKQNT 201 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 K+K S+R +R + M+ LKKS+ + SED + +E I ++ D T+ +D K KE Sbjct: 202 NKAKDSLRKVRTNSMNKLKKSKDT--VSEDTIRLIEKQISQMADDTVAELDRHLAVKTKE 259 Query: 183 IM 184 ++ Sbjct: 260 LL 261 >gi|330846602|ref|XP_003295107.1| hypothetical protein DICPUDRAFT_160263 [Dictyostelium purpureum] gi|325074270|gb|EGC28370.1| hypothetical protein DICPUDRAFT_160263 [Dictyostelium purpureum] Length = 265 Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 60/179 (33%), Positives = 100/179 (55%), Gaps = 4/179 (2%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 IDL ++ T+ ++ ++ +R GR P +LD + VE ++ L +A VTV +P Sbjct: 88 IDLSRYQEASMKTLDYISREYGNIRFGRAGPELLDRINVETPNGNLLLPHIAMVTVKDPL 147 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 L ++++D V +VE+ I + LGL P V G V+++ +P+ T + R L+K + +E Sbjct: 148 TLNITLYDTSFVKNVEKAIQTAGLGLMPQVSGTVIKVSLPKPTNDLRQKLIKQVNTISED 207 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +K+S+R R+D MD L K+ K +D LE +IQK+ D + NI + K KEI Sbjct: 208 AKVSIRRHRKDAMDSL----KNYKLRKDDEKLLEKNIQKMIDDYVGNITKLTDSKLKEI 262 >gi|114626532|ref|XP_001135996.1| PREDICTED: mitochondrial ribosome recycling factor isoform 3 [Pan troglodytes] gi|114626534|ref|XP_001136081.1| PREDICTED: mitochondrial ribosome recycling factor isoform 4 [Pan troglodytes] gi|114626536|ref|XP_001136160.1| PREDICTED: mitochondrial ribosome recycling factor isoform 5 [Pan troglodytes] gi|114626538|ref|XP_001136239.1| PREDICTED: mitochondrial ribosome recycling factor isoform 6 [Pan troglodytes] Length = 262 Score = 104 bits (260), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 59/182 (32%), Positives = 102/182 (56%), Gaps = 3/182 (1%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +I+L+ + + M I LK + R SP LD + V + LNQ++ +++ P Sbjct: 82 IINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMKSP 141 Query: 64 RMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 ++++V++ E A+ + I ES + LNP VEG ++R+P+P+ T E R LVK+A Sbjct: 142 QLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPQVTREHREMLVKLAKQNT 201 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 K+K S+R +R + M+ LKKS+ + SED + +E I ++ D T+ +D K KE Sbjct: 202 NKAKDSLRKVRTNSMNKLKKSKYT--VSEDTIRLIEKQISQMADDTVAELDRHLAVKTKE 259 Query: 183 IM 184 ++ Sbjct: 260 LL 261 >gi|297270213|ref|XP_001089220.2| PREDICTED: ribosome-recycling factor, mitochondrial isoform 1 [Macaca mulatta] Length = 336 Score = 104 bits (260), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 59/182 (32%), Positives = 101/182 (55%), Gaps = 3/182 (1%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +I+L+ + + M I LK + R SP LD + V + LNQ+ +++ P Sbjct: 156 IINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQIGQISMKSP 215 Query: 64 RMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 ++++V++ E A+ + I ES + LNP VEG ++R+P+P+ T E R LVK+A Sbjct: 216 QLILVNMASFPECTAAAIKAIRESGMNLNPEVEGMLIRVPIPQVTREHRETLVKLAKQNT 275 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 K+K S+R +R + M+ LKKS+ + SED + +E I ++ D T+ +D K KE Sbjct: 276 NKAKDSLRKVRTNAMNKLKKSKDT--VSEDTIRLVEKQISQMADDTVAELDRHLAVKTKE 333 Query: 183 IM 184 ++ Sbjct: 334 LL 335 >gi|332229921|ref|XP_003264135.1| PREDICTED: ribosome-recycling factor, mitochondrial-like isoform 1 [Nomascus leucogenys] Length = 336 Score = 104 bits (259), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 59/182 (32%), Positives = 102/182 (56%), Gaps = 3/182 (1%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +I+L+ + + M I LK + R SP LD + V + LNQ++ +++ P Sbjct: 156 IINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMKSP 215 Query: 64 RMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 ++++V++ E A+ + I ES + LNP VEG ++R+P+P+ T E R LVK+A Sbjct: 216 QLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPQVTREHREMLVKLAKQNT 275 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 K+K S+R +R + M+ LKKS+ + SED + +E I ++ D T+ +D K KE Sbjct: 276 NKAKDSLRKVRTNSMNKLKKSKDT--VSEDTIRLIEKQISQMADDTVAELDRHLAVKTKE 333 Query: 183 IM 184 ++ Sbjct: 334 LL 335 >gi|297685276|ref|XP_002820221.1| PREDICTED: ribosome-recycling factor, mitochondrial-like [Pongo abelii] Length = 336 Score = 104 bits (259), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 59/182 (32%), Positives = 102/182 (56%), Gaps = 3/182 (1%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +I+L+ + + M I LK + R SP LD + V + LNQ++ +++ P Sbjct: 156 IINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMKSP 215 Query: 64 RMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 ++++V++ E A+ + I ES + LNP VEG ++R+P+P+ T E R LVK+A Sbjct: 216 QLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPQVTREHREMLVKLAKQNT 275 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 K+K S+R +R + M+ LKKS+ + SED + +E I ++ D T+ +D K KE Sbjct: 276 NKAKDSLRKVRTNSMNKLKKSKDT--VSEDTIRLIEKQISQMADDTVAELDRHLAVKTKE 333 Query: 183 IM 184 ++ Sbjct: 334 LL 335 >gi|311246342|ref|XP_003122164.1| PREDICTED: ribosome-recycling factor, mitochondrial-like isoform 1 [Sus scrofa] Length = 262 Score = 104 bits (259), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 60/182 (32%), Positives = 101/182 (55%), Gaps = 3/182 (1%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +I L+ + + M I LK + R SP LD + V + LNQ+ +++ P Sbjct: 82 IISLEEVDEEMKSVIEALKDNFNKTVNIRTSPGSLDQITVVTADGKLALNQIGQISMKSP 141 Query: 64 RMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 ++++V++ E A+ + I ES + LNP VEG ++R+P+P+ T E R LVK+A Sbjct: 142 QLILVNMASFPECTAAAIKAIRESGMNLNPDVEGTLIRVPIPKVTREHREMLVKLAKQNT 201 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 K+K S+R +R + M+ LKKS+ KASED + +E I ++ D T+ ++ K KE Sbjct: 202 NKAKESLRKVRTNAMNKLKKSK--DKASEDTLRLIEKQISQMADDTVAELERHLAVKTKE 259 Query: 183 IM 184 ++ Sbjct: 260 LL 261 >gi|119607926|gb|EAW87520.1| mitochondrial ribosome recycling factor, isoform CRA_a [Homo sapiens] gi|119607929|gb|EAW87523.1| mitochondrial ribosome recycling factor, isoform CRA_a [Homo sapiens] Length = 336 Score = 104 bits (259), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 59/182 (32%), Positives = 102/182 (56%), Gaps = 3/182 (1%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +I+L+ + + M I LK + R SP LD + V + LNQ++ +++ P Sbjct: 156 IINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMKSP 215 Query: 64 RMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 ++++V++ E A+ + I ES + LNP VEG ++R+P+P+ T E R LVK+A Sbjct: 216 QLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPQVTREHREMLVKLAKQNT 275 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 K+K S+R +R + M+ LKKS+ + SED + +E I ++ D T+ +D K KE Sbjct: 276 NKAKDSLRKVRTNSMNKLKKSKDT--VSEDTIRLIEKQISQMADDTVAELDRHLAVKTKE 333 Query: 183 IM 184 ++ Sbjct: 334 LL 335 >gi|294660229|ref|NP_852872.2| ribosome-recycling factor [Mycoplasma gallisepticum str. R(low)] gi|60416389|sp|Q7NC19|RRF_MYCGA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|284811884|gb|AAP56440.2| ribosome-recycling factor (RRF) (Ribosome-releasing factor) [Mycoplasma gallisepticum str. R(low)] gi|284930333|gb|ADC30272.1| ribosome-recycling factor (RRF) (Ribosome-releasing factor) [Mycoplasma gallisepticum str. R(high)] Length = 183 Score = 103 bits (258), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 56/169 (33%), Positives = 99/169 (58%), Gaps = 3/169 (1%) Query: 18 ISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVA 77 I++ + ++ +R+GR + +LD V+ E YG PL ++A++++ EPR +++ ++K V Sbjct: 18 INWFEGELAKVRSGRANLKILDNVRAEYYGEQTPLIEMASLSIPEPREILIKPYEKSSVN 77 Query: 78 SVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGM 137 ++ + ++NL L P+V+G +RI +P TEE R VK A EK+K VR IRRD + Sbjct: 78 LIQAALLKANLNLTPVVDGDKIRIKLPLLTEENRKENVKKVKAVGEKAKQEVRFIRRDTL 137 Query: 138 DHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 + +K + + K D+ E + KIT I IDS +K+K+++ Sbjct: 138 NKIKSDKIADK---DLNKYFEEQVDKITKKYIDQIDSILAKKEKDLLSL 183 >gi|332832790|ref|XP_520237.3| PREDICTED: ribosome-recycling factor, mitochondrial isoform 7 [Pan troglodytes] Length = 336 Score = 103 bits (258), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 59/182 (32%), Positives = 102/182 (56%), Gaps = 3/182 (1%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +I+L+ + + M I LK + R SP LD + V + LNQ++ +++ P Sbjct: 156 IINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMKSP 215 Query: 64 RMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 ++++V++ E A+ + I ES + LNP VEG ++R+P+P+ T E R LVK+A Sbjct: 216 QLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPQVTREHREMLVKLAKQNT 275 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 K+K S+R +R + M+ LKKS+ + SED + +E I ++ D T+ +D K KE Sbjct: 276 NKAKDSLRKVRTNSMNKLKKSKYT--VSEDTIRLIEKQISQMADDTVAELDRHLAVKTKE 333 Query: 183 IM 184 ++ Sbjct: 334 LL 335 >gi|295698561|ref|YP_003603216.1| ribosome recycling factor [Candidatus Riesia pediculicola USDA] gi|291157311|gb|ADD79756.1| ribosome recycling factor [Candidatus Riesia pediculicola USDA] Length = 185 Score = 103 bits (258), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 57/177 (32%), Positives = 98/177 (55%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 +K M + +K + +R+ ++ P++L+ V V YGS PLN+++ ++ R L ++ Sbjct: 9 VKKNMNQIVRSFEKRINKIRSEKIDPNILEKVSVFCYGSQTPLNRISLISSKNSRTLSIT 68 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 V+D+ ++ V+ I + L + V+++ P TEERR L+K+ AE KIS+ Sbjct: 69 VFDRSLIKIVKEEILKLRLDCQIFLSENVIKLVFPLITEERRKNLIKIVQKMAETEKISI 128 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 R IR+ D +K KS K ED + +IQ TD+ IK ID +EK++ ++HF Sbjct: 129 RKIRKVTKDKIKTLIKSKKIDEDNGRVIYMEIQDYTDTFIKKIDVILKEKERSLLHF 185 >gi|26554405|ref|NP_758339.1| ribosome recycling factor [Mycoplasma penetrans HF-2] gi|44888332|sp|Q8EUH0|RRF_MYCPE RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|26454415|dbj|BAC44743.1| ribosome recycling factor [Mycoplasma penetrans HF-2] Length = 183 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 59/167 (35%), Positives = 95/167 (56%), Gaps = 3/167 (1%) Query: 18 ISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVA 77 + +L + +++GR +P +LD V VEAYG L ++AN+ V+E + +VV +DK ++ Sbjct: 18 LEWLDSEFNKIKSGRPNPKILDHVMVEAYGDKSKLFEIANMQVVEGKQIVVKPYDKTLLH 77 Query: 78 SVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGM 137 + I + NLGL+ V+ LRI P TEE R A VK ++E+ K+ +RNIR+D Sbjct: 78 DINSAIQKENLGLSVQVDADSLRIIFPSPTEETRKASVKKVKEFSEQVKVEIRNIRKDVH 137 Query: 138 DHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +K + + ED + E D+ K+T +D F EK+KE+M Sbjct: 138 HKIKDDK---ELREDELKWYEEDLDKLTREWNAKVDKAFAEKEKELM 181 >gi|67925886|ref|ZP_00519172.1| Ribosome recycling factor [Crocosphaera watsonii WH 8501] gi|67852265|gb|EAM47738.1| Ribosome recycling factor [Crocosphaera watsonii WH 8501] Length = 122 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 49/120 (40%), Positives = 78/120 (65%) Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+++ +DK + +E+ I S++GL P +GQV+R+ +P TEERR LVK+A AE+ Sbjct: 1 MIMIQPYDKGSMGQIEKAIQMSDVGLTPNNDGQVIRLNIPSLTEERRKDLVKLASKMAEE 60 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 K+++RNIRRD +D ++K K+ S+D L++DIQK+TD ID + K+ +IM Sbjct: 61 GKVAIRNIRRDAIDDVRKQEKNSDISKDESRDLQDDIQKVTDKFTNKIDDLLKSKETDIM 120 >gi|73968248|ref|XP_537859.2| PREDICTED: similar to mitochondrial ribosome recycling factor isoform 1 [Canis familiaris] Length = 262 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 101/182 (55%), Gaps = 3/182 (1%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +I+L+ + + M + LK + + R SP LD + V + LNQ+ +++ P Sbjct: 82 IINLEEVDEEMKSVMEALKDNFNKTISIRTSPGSLDRITVVTANGKLALNQIGQISMKSP 141 Query: 64 RMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 +++V++ E A+ + I ES + LNP VEG ++R+P+P+ T E R +VK+A Sbjct: 142 HLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPKVTREHREMMVKLAKQNT 201 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 K+K S+R +R + M+ LKKS+ K SED + +E I ++ D T+ +D K KE Sbjct: 202 NKAKDSLRKVRTNAMNKLKKSK--DKVSEDTIRLIEKQISQMADDTVAELDRHLAVKTKE 259 Query: 183 IM 184 ++ Sbjct: 260 LL 261 >gi|50954908|ref|YP_062196.1| ribosome recycling factor [Leifsonia xyli subsp. xyli str. CTCB07] gi|60390246|sp|Q6AEV4|RRF_LEIXX RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|50951390|gb|AAT89091.1| ribosome recycling factor [Leifsonia xyli subsp. xyli str. CTCB07] Length = 186 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 56/180 (31%), Positives = 101/180 (56%), Gaps = 3/180 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + + RM T+ K+D T+ GR +P++ V V+ YGS PL Q+A + E R+L Sbjct: 8 ISDASQRMSKTLEAAKEDFGTVSAGRANPALFQKVLVDYYGSPTPLAQLAGLQNPEARVL 67 Query: 67 VVSVWDKEMVASVERGI-HESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 +V+ +DK + +ER I ++ N +G+++R+ +PE TE+RR VK+ E + Sbjct: 68 IVTPYDKGALKEIERAIVTMPSMSANVGNDGEIVRVTLPELTEDRRKEFVKIVRGKGEDA 127 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 K+++RNIRR D L + G+ +D VA E +++ +T + + +D + K+ E++ Sbjct: 128 KVAIRNIRRRAKDELDALK--GEVGDDEVARGEKELEALTRTNVDLVDEALKRKEAELLE 185 >gi|284931100|gb|ADC31038.1| ribosome-recycling factor (RRF) (Ribosome-releasing factor) [Mycoplasma gallisepticum str. F] Length = 183 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 56/169 (33%), Positives = 99/169 (58%), Gaps = 3/169 (1%) Query: 18 ISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVA 77 I++ + ++ +R+GR + +LD V+ E YG PL ++A++++ EPR +++ ++K V Sbjct: 18 INWFEGELAKVRSGRANLKILDNVRAEYYGEQTPLIEMASLSIPEPREILIKPYEKSSVN 77 Query: 78 SVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGM 137 ++ + ++NL L P+V+G +RI +P TEE R VK A EK+K VR IRRD + Sbjct: 78 PIQAALLKANLNLTPVVDGDKIRIKLPLLTEENRKENVKKVKAVGEKAKQEVRFIRRDTL 137 Query: 138 DHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 + +K + + K D+ E + KIT I IDS +K+K+++ Sbjct: 138 NKIKSDKIADK---DLNKYFEEQVDKITKKYIDLIDSILAKKEKDLLSL 183 >gi|257068198|ref|YP_003154453.1| ribosome recycling factor [Brachybacterium faecium DSM 4810] gi|256559016|gb|ACU84863.1| ribosome recycling factor [Brachybacterium faecium DSM 4810] Length = 188 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 55/177 (31%), Positives = 98/177 (55%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ + +M ++ K + +RTGR + +ML + VE YG+ PLNQ++++ E R + Sbjct: 9 LKDAEAKMKKSVEVTKDEFTAIRTGRANAAMLQGITVEYYGAPTPLNQLSSLQFPEARTI 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK ++ +E + +S+LG+NP G LR+ +P TEERR VK+A AE + Sbjct: 69 IVTPYDKSAMSGIETALRDSDLGVNPTNNGDNLRVVLPALTEERRKDYVKLARTKAEDGR 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 ++VR R + ++K K + ED E +++ +T ID K+ E+ Sbjct: 129 VAVRGSRGNAKKAIEKLVKDKEIGEDEGTRAEKELEALTKKYNDQIDEALGLKETEL 185 >gi|301760406|ref|XP_002915994.1| PREDICTED: ribosome-recycling factor, mitochondrial-like [Ailuropoda melanoleuca] Length = 262 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 60/182 (32%), Positives = 100/182 (54%), Gaps = 3/182 (1%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +I L+ + + M + LK + R SP LD + V + LNQ+ +++ P Sbjct: 82 IISLEEVDEEMKSVMEALKDNFNKTVNIRTSPGSLDHITVVTADGKLALNQIGQISMKSP 141 Query: 64 RMLVVS-VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 ++++V+ V E A+ + I ES + LNP VEG ++R+P+P+ T E R LVK+A Sbjct: 142 QLILVNMVSFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPKVTREHREMLVKLAKQNT 201 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 K+K S+R +R + M+ LKKS+ K SED + +E I ++ D T+ +D K KE Sbjct: 202 NKAKDSLRKVRTNAMNKLKKSK--DKVSEDTIRLIEKQISQMADDTVAELDRHLAVKTKE 259 Query: 183 IM 184 ++ Sbjct: 260 LL 261 >gi|27904717|ref|NP_777843.1| ribosome recycling factor [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|44888331|sp|Q89AP1|RRF_BUCBP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|27904114|gb|AAO26948.1| ribosome recycling factor [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 183 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 56/172 (32%), Positives = 98/172 (56%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M + + TLR+ R SPS+LD + ++ G + L +++N+ V L ++++D Sbjct: 11 KMDHCVHMFVNQLNTLRSSRASPSILDTILIDYLGQKIQLKKLSNIIVENVNTLRITLFD 70 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 ++ +VE+ I S L L PI +I +P TEERRL L+K+A AE S+I +RNI Sbjct: 71 PKIKNNVEKAIISSKLDLIPIFINNYFQIKIPVLTEERRLQLIKLAKKMAENSRICIRNI 130 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RR + +K K S D L++++Q IT+S ++ I+ +K+K+++ Sbjct: 131 RRLSNEKIKLFLKDKIISSDKERRLQHEVQDITNSYMEKINVILSKKEKDLL 182 >gi|88855238|ref|ZP_01129903.1| ribosome recycling factor [marine actinobacterium PHSC20C1] gi|88815766|gb|EAR25623.1| ribosome recycling factor [marine actinobacterium PHSC20C1] Length = 183 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 101/180 (56%), Gaps = 4/180 (2%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++M + K D T+RTGR +P++ V V+ YG+ PL Q+A++ E R L Sbjct: 6 LAEASEKMDKALEAAKDDFGTVRTGRANPALFQKVLVDYYGTPTPLQQLASMVNQEARTL 65 Query: 67 VVSVWDKEMVASVERGIHES-NLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 +++ +DK + +E+ I + +LG + +G V+R +PE TEERR VK+ AE++ Sbjct: 66 IITPFDKTALKDIEKAIAGAHHLGASVGNDGNVIRATLPELTEERRKDFVKIVRDKAEQA 125 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++S+RN+RR D L + G ED +A E +++ T + + +D + K+ E++ Sbjct: 126 RVSLRNVRRKAKDDLDALTEVG---EDEIARAEKELEASTKAHVDAVDDALKRKETELLE 182 >gi|21312752|ref|NP_080698.1| ribosome-recycling factor, mitochondrial precursor [Mus musculus] gi|62901049|sp|Q9D6S7|RRFM_MOUSE RecName: Full=Ribosome-recycling factor, mitochondrial; Short=RRF; AltName: Full=Ribosome-releasing factor, mitochondrial; Flags: Precursor gi|12845172|dbj|BAB26646.1| unnamed protein product [Mus musculus] gi|18044179|gb|AAH19787.1| Mitochondrial ribosome recycling factor [Mus musculus] gi|26328197|dbj|BAC27839.1| unnamed protein product [Mus musculus] gi|123208257|emb|CAM20861.1| mitochondrial ribosome recycling factor [Mus musculus] Length = 262 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 100/182 (54%), Gaps = 3/182 (1%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +I L+ + + M + LK + R +P LD + V V LNQ+ +++ P Sbjct: 82 IISLEEVDEDMKSVVEALKDNFNKTLNIRTAPGSLDHITVVTADGKVALNQIGQISMKSP 141 Query: 64 RMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 ++++V++ E A+ + I ES + LNP VEG ++R+P+P+ T E R LVK+A Sbjct: 142 QVILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPKVTREHREMLVKLAKQNT 201 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 K+K ++R +R + M+ LKKS+ K SED + +E I ++ D T+ +D K KE Sbjct: 202 NKAKENLRKVRTNAMNKLKKSK--DKTSEDTIRLIEKQISQMADDTVAELDQHLAAKTKE 259 Query: 183 IM 184 ++ Sbjct: 260 LL 261 >gi|255644392|gb|ACU22701.1| unknown [Glycine max] Length = 261 Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 62/175 (35%), Positives = 97/175 (55%), Gaps = 2/175 (1%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 N +M ++ L ++ LRTGR SP MLD + VE G +PLN++A V+VL+P+ L V Sbjct: 86 NAVSQMEAAMAALSTELSKLRTGRASPGMLDHIIVETSGLKMPLNRLAVVSVLDPKTLSV 145 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 + +D E + +E I S LGLNP +G+ L +P T+E A+ K+ E ++ S Sbjct: 146 NPYDPETLKQLENAIVSSPLGLNPKSDGERLIAVIPPLTKEHMQAMTKLVAKSCEDARQS 205 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +R R+ MD +KK S +D + LE ++ +T IK+ + K+KEI Sbjct: 206 IRRARQQAMDAIKKLYSS--LPKDDIKRLEKEVDDLTKKFIKSAKDICKAKEKEI 258 >gi|320165435|gb|EFW42334.1| predicted protein [Capsaspora owczarzaki ATCC 30864] Length = 413 Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 63/177 (35%), Positives = 95/177 (53%), Gaps = 8/177 (4%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++ R+ T FL + LRTGR +P+MLD VKV PLN+ V+V + L Sbjct: 242 LDEVRTRLSTTAKFLTTALAKLRTGRATPAMLDSVKVRGR----PLNEHGMVSVKDASTL 297 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+SV D+ ++ +ER I E++L +NP+ +G+ ++ +P+ T+E R L K+A E+ K Sbjct: 298 VISVNDETVLDDIERAIREADLNINPVRDGKFVKCVIPKMTQEFREKLTKMAREQGEEYK 357 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 I +R +R + KKS S V E D+ K D K ID+ K KEI Sbjct: 358 IRLRRVRAKAITDAKKS----GVSTSEVFRFEKDVGKAFDDQSKQIDTTVSAKIKEI 410 >gi|328874111|gb|EGG22477.1| hypothetical protein DFA_04605 [Dictyostelium fasciculatum] Length = 348 Score = 101 bits (251), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 56/179 (31%), Positives = 103/179 (57%), Gaps = 3/179 (1%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 +DL +K R T+ F+K+ +R GR P +L+ + VE ++ + +A +T+ + Sbjct: 171 VDLSTMKQRCEATMDFVKRQFGDIRVGRAGPELLERITVETPNGNMQIQHMAMITIKDAL 230 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 L ++ +D M+ ++E+ + +S+LGLNP G ++RI +P+ T++ R L+K + +E+ Sbjct: 231 TLHITPYDPNMLKNIEKALQKSDLGLNPTAVGTLIRISLPKPTQDLRNKLLKNVNTISEE 290 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +K+SVR R++ D + K + K E ++E +IQK+TD I + E K KEI Sbjct: 291 AKVSVRRHRKETTDSVVKQFRLTKDDE---KTIEKNIQKMTDDFIAQVTKATESKVKEI 346 >gi|56605784|ref|NP_001008355.1| ribosome-recycling factor, mitochondrial precursor [Rattus norvegicus] gi|62900751|sp|Q5RKI9|RRFM_RAT RecName: Full=Ribosome-recycling factor, mitochondrial; Short=RRF; AltName: Full=Ribosome-releasing factor, mitochondrial; Flags: Precursor gi|55715664|gb|AAH85779.1| Mitochondrial ribosome recycling factor [Rattus norvegicus] Length = 262 Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 57/182 (31%), Positives = 100/182 (54%), Gaps = 3/182 (1%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +I L+ + + M + LK + R +P LD + V + LNQ+ +++ P Sbjct: 82 IISLEEVDEDMKSVMEALKDNFNKTLNIRTAPGSLDHITVVTADGKLALNQIGQISMKSP 141 Query: 64 RMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 ++++V++ E A+ + I ES + LNP VEG ++R+P+P+ T E R LVK+A Sbjct: 142 QLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPKVTREHREMLVKLAKQNT 201 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 K+K ++R +R + M+ LKKS+ K SED + +E I ++ D T+ +D K KE Sbjct: 202 NKAKENLRKVRTNAMNKLKKSK--DKTSEDTIRLIEKQISQMADDTVAELDRHLAAKTKE 259 Query: 183 IM 184 ++ Sbjct: 260 LL 261 >gi|115459126|ref|NP_001053163.1| Os04g0490400 [Oryza sativa Japonica Group] gi|21740669|emb|CAD41132.1| OSJNBa0084K20.10 [Oryza sativa Japonica Group] gi|38347444|emb|CAE02486.2| OSJNBa0076N16.8 [Oryza sativa Japonica Group] gi|113564734|dbj|BAF15077.1| Os04g0490400 [Oryza sativa Japonica Group] gi|125548818|gb|EAY94640.1| hypothetical protein OsI_16419 [Oryza sativa Indica Group] gi|215704152|dbj|BAG92992.1| unnamed protein product [Oryza sativa Japonica Group] Length = 260 Score = 100 bits (250), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 65/171 (38%), Positives = 96/171 (56%), Gaps = 2/171 (1%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M + L +++ LRTGR SP MLD + VE G V LN++A V+VL+ L V +D Sbjct: 89 QMEAAVVALSRELSKLRTGRASPGMLDHIMVETTGVKVALNRLAVVSVLDAHTLSVMPYD 148 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + S+E I S LG+NP +G + +P T+E AL KV AE K S+R Sbjct: 149 PSSMKSIEHAIISSPLGINPTPDGNRIIANIPPLTKENIQALCKVVTKSAEDFKQSIRRA 208 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 R+ +D +KKS SG +D V LE +++++T IK+ D + K+KEI Sbjct: 209 RQKALDTIKKS-ASGMPKDD-VKRLEKEVEELTKKFIKSADDMCKAKEKEI 257 >gi|315302965|ref|ZP_07873688.1| ribosome recycling factor [Listeria ivanovii FSL F6-596] gi|313628664|gb|EFR97074.1| ribosome recycling factor [Listeria ivanovii FSL F6-596] Length = 119 Score = 100 bits (250), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 51/112 (45%), Positives = 77/112 (68%) Query: 75 MVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRR 134 ++ +E+ I +S+LGL P +G VLR+ +P+ TEERR LVK AE++K++VRNIRR Sbjct: 8 ILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAKVAVRNIRR 67 Query: 135 DGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 + + LKK K+G +ED + S D+QK+TD +IKNIDS ++K+ EI+ Sbjct: 68 EANEDLKKLEKNGDITEDDLRSYGEDVQKLTDESIKNIDSITKDKEAEILEV 119 >gi|125590832|gb|EAZ31182.1| hypothetical protein OsJ_15282 [Oryza sativa Japonica Group] Length = 260 Score = 100 bits (250), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 65/171 (38%), Positives = 96/171 (56%), Gaps = 2/171 (1%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M + L +++ LRTGR SP MLD + VE G V LN++A V+VL+ L V +D Sbjct: 89 QMEAAVVALSRELSKLRTGRASPGMLDHIMVETTGVKVALNRLAVVSVLDAHTLSVMPYD 148 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + S+E I S LG+NP +G + +P T+E AL KV AE K S+R Sbjct: 149 PSSMKSIEHAIISSPLGINPTPDGNRIIANIPPLTKENIQALCKVVTKSAEDFKQSIRRA 208 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 R+ +D +KKS SG +D V LE +++++T IK+ D + K+KEI Sbjct: 209 RQKALDTIKKS-ASGMPKDD-VKRLEKEVEELTKKFIKSADDMCKAKEKEI 257 >gi|148377315|ref|YP_001256191.1| ribosome recycling factor (ribosome releasingfactor) [Mycoplasma agalactiae PG2] gi|291319983|ref|YP_003515241.1| ribosome recycling factor (ribosome releasing factor) [Mycoplasma agalactiae] gi|148291361|emb|CAL58744.1| Ribosome recycling factor (Ribosome releasingfactor) [Mycoplasma agalactiae PG2] gi|290752312|emb|CBH40283.1| Ribosome recycling factor (Ribosome releasing factor) [Mycoplasma agalactiae] Length = 182 Score = 100 bits (250), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 56/184 (30%), Positives = 106/184 (57%), Gaps = 4/184 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+++ LQ +++ + I+ L ++ TGR +P ++ +K+ Y + P+ +++N++V Sbjct: 1 MDELFILQ-LEEEIDKAINHLVFELSKTSTGRANPQLIRGIKINYYDTLTPIEELSNISV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E + L++ +D V + + I + LG+NP+ EG +RI P T ER+ LVK Sbjct: 60 PEAQQLLIKPFDATTVRDIIKAITSAQLGINPVDEGSQIRIKFPPLTTERKRELVKSLSK 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 ++E +K+++RN R++ +K + + SEDM D+QKI D I+++D +K+ Sbjct: 120 HSETAKVAIRNARQNANKVIKANE---EISEDMQKRYLADVQKIVDKNIEHVDELVSKKE 176 Query: 181 KEIM 184 KEIM Sbjct: 177 KEIM 180 >gi|206896074|ref|YP_002247089.1| ribosome recycling factor [Coprothermobacter proteolyticus DSM 5265] gi|254809505|sp|B5Y8J2|RRF_COPPD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|206738691|gb|ACI17769.1| ribosome recycling factor [Coprothermobacter proteolyticus DSM 5265] Length = 186 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 55/175 (31%), Positives = 105/175 (60%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 ++ TI+ + + T+R RVSP++L+ V VE G+ L+++A V + R L++ Sbjct: 11 REHFQKTINTMSDQLSTVRASRVSPAILEPVTVEYEGAKYKLSELAMVVAQDARTLIIEP 70 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 WD M+ ++ R + ++N+G NP +G+ +++ P ++ERR L ++ Y E+++I++R Sbjct: 71 WDVSMIPAISRSLQKANVGANPSDDGKRIKLVFPSLSQERREELARLVDKYLEEARIALR 130 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 NIRR+ +D +K K + SED ++N++QK + K ++ + K+KEIM Sbjct: 131 NIRREYIDEVKSKEKKKELSEDESRRIQNELQKAFEEYEKQMEQICQRKRKEIME 185 >gi|332226320|ref|XP_003262337.1| PREDICTED: ribosome-recycling factor, mitochondrial-like [Nomascus leucogenys] Length = 262 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 56/182 (30%), Positives = 100/182 (54%), Gaps = 3/182 (1%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +I+L+ + + M I LK + R SP LD + V + LNQ++ +++ P Sbjct: 82 IINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMKSP 141 Query: 64 RMLVVSVWDK-EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 ++++V++ E A+ + I ES + LNP VEG ++R+P+P+ E R LVK+A Sbjct: 142 QLILVNMASSPECTAAAIKAIRESGMNLNPEVEGALIRVPIPQVIREHREMLVKLAKQNT 201 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 K+K S+R + + ++ LKKS+ + SED + +E I ++ D T+ +D K KE Sbjct: 202 NKAKYSLRKVCTNAVNKLKKSKDT--VSEDTIRLIEKQISQMADDTVAELDRHLAVKTKE 259 Query: 183 IM 184 ++ Sbjct: 260 LL 261 >gi|313678182|ref|YP_004055922.1| ribosome recycling factor [Mycoplasma bovis PG45] gi|312950548|gb|ADR25143.1| ribosome recycling factor [Mycoplasma bovis PG45] Length = 183 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 95/170 (55%), Gaps = 3/170 (1%) Query: 15 GDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKE 74 G I+ L ++ TGR +P ++ +K+ Y + P+ ++AN++V E + L++ +D Sbjct: 15 GKAINHLVFELSKTSTGRANPQLIRGIKINYYDTLTPIEELANISVPEAQQLLIKPFDAT 74 Query: 75 MVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRR 134 V + + I + LG+NP+ EG +RI P T ER+ LVK ++E +K+ +RN R+ Sbjct: 75 TVRDIIKAITNAQLGINPVDEGSQIRIKFPPLTTERKKELVKALSKHSEAAKVGIRNARQ 134 Query: 135 DGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 + +K + + SED D+QKI D I+++D +K+KEIM Sbjct: 135 NANKIIK---SNDEISEDAQKRYLLDVQKIVDKNIEHVDELVSKKEKEIM 181 >gi|209736906|gb|ACI69322.1| Ribosome recycling factor, mitochondrial precursor [Salmo salar] Length = 265 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 103/182 (56%), Gaps = 3/182 (1%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +I L+ +K+ M ++ LK D + R SP LD + V PLNQ+ +++ P Sbjct: 85 IISLEEVKEDMAAVLTTLKDDFSRNLSIRTSPGALDHIVVSTADGKFPLNQLGQISMKSP 144 Query: 64 RMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 ++++V++ E V + R + ES++ LNP V+G ++R+ +P+ T E R L K+A ++ Sbjct: 145 QLIMVNMTAFPEAVGAATRSLRESSMKLNPEVDGTIIRVAIPKVTREHRENLAKLAKQFS 204 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 K+K S+R +R + + +KK++ + SED + +E I ++ DS ++D K KE Sbjct: 205 NKAKESLRKVRSNAITQVKKAKDT--VSEDTIRLVEKQIGQMADSFAADVDKQLTTKTKE 262 Query: 183 IM 184 ++ Sbjct: 263 LL 264 >gi|242076314|ref|XP_002448093.1| hypothetical protein SORBIDRAFT_06g020970 [Sorghum bicolor] gi|241939276|gb|EES12421.1| hypothetical protein SORBIDRAFT_06g020970 [Sorghum bicolor] Length = 258 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 62/171 (36%), Positives = 95/171 (55%), Gaps = 2/171 (1%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M + L +++ LRTGR +P MLD + VE G V LN++A V+VL+ L V +D Sbjct: 87 QMDAAVIALSRELSKLRTGRATPGMLDHIMVENAGVKVALNRIAVVSVLDAHTLSVMPYD 146 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + S+E I S LG+NP +G + +P T+E AL KV AE K S+R Sbjct: 147 PTSMKSIEHAIISSPLGINPTPDGNRIIAAIPPLTKENIQALCKVVTKSAEDFKQSIRRA 206 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 R+ +D +KKS S +D V +E +++++T IK+ D + K+KEI Sbjct: 207 RQKALDTIKKSASS--MPKDDVKRIEKEVEELTKKFIKSADDMCKAKEKEI 255 >gi|169827156|ref|YP_001697314.1| ribosome recycling factor [Lysinibacillus sphaericus C3-41] gi|168991644|gb|ACA39184.1| Ribosome recycling factor (Ribosome-releasing factor) (RRF) [Lysinibacillus sphaericus C3-41] Length = 125 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 43/120 (35%), Positives = 80/120 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ K++M TI+ +++ ++R GR + S+LD + V+ YG+ P+NQ+A V+V E R+L Sbjct: 6 LEQAKEKMNKTIAAFTRELSSIRAGRANASLLDRIMVDYYGAPTPINQLAGVSVPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V++ +DK ++ +E+ I +S++G+ P +G ++R+ +P TEERR LVK +K++ Sbjct: 66 VITPYDKTILGEIEKAIMKSDIGITPTNDGSIIRLMIPALTEERRKDLVKQVQKRQQKTQ 125 >gi|147840489|emb|CAN68423.1| hypothetical protein VITISV_018268 [Vitis vinifera] Length = 258 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 59/176 (33%), Positives = 99/176 (56%), Gaps = 2/176 (1%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N +M + L +++ LRTGR S MLD + VE G +PL+++A V+VL+P+ L Sbjct: 82 ENAMSQMDAAVVALSRELSKLRTGRASAGMLDHIIVETGGVKMPLSRLAVVSVLDPKTLS 141 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+ +D + + +E I S LGLNP +G+ L +P T+E A+ KV E K Sbjct: 142 VTPYDLDALKQLENAIVSSPLGLNPKADGERLIAVIPPLTKEHIQAMCKVVAKSCEDVKQ 201 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 S+R R+ +D +KK+ S +D+ LE ++ ++T +K+ + + K+KEI Sbjct: 202 SIRRARQKALDXIKKAGSS--LPKDVAKRLEKEVDELTKKFVKSAEDMCKAKEKEI 255 >gi|225452150|ref|XP_002263449.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|296090242|emb|CBI40061.3| unnamed protein product [Vitis vinifera] Length = 258 Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 59/176 (33%), Positives = 99/176 (56%), Gaps = 2/176 (1%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N +M + L +++ LRTGR S MLD + VE G +PL+++A V+VL+P+ L Sbjct: 82 ENAMSQMDAAVVALSRELSKLRTGRASAGMLDHIIVETGGVKMPLSRLAVVSVLDPKTLS 141 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+ +D + + +E I S LGLNP +G+ L +P T+E A+ KV E K Sbjct: 142 VTPYDLDALKQLENAIVSSPLGLNPKADGERLIAVIPPLTKEHIQAMCKVVAKSCEDVKQ 201 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 S+R R+ +D +KK+ S +D+ LE ++ ++T +K+ + + K+KEI Sbjct: 202 SIRRARQKALDMIKKAGSS--LPKDVAKRLEKEVDELTKKFVKSAEDMCKAKEKEI 255 >gi|196003386|ref|XP_002111560.1| hypothetical protein TRIADDRAFT_55709 [Trichoplax adhaerens] gi|190585459|gb|EDV25527.1| hypothetical protein TRIADDRAFT_55709 [Trichoplax adhaerens] Length = 247 Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 103/183 (56%), Gaps = 4/183 (2%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +I +K ++ + L ++ + R++P L+ + V+ VPL Q+ VT P Sbjct: 67 MISFSEMKIKLEGIVDGLAREYSNILVSRITPENLNRISVQTNDGKVPLKQLGQVTSTSP 126 Query: 64 RMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 ++L +S+ E+V + I + L LNPIV+G L++P+P+ T+E+R +VK A + Sbjct: 127 QLLHISLAAFPEVVNNAAIAIRNAGLNLNPIVDGPSLKVPIPKMTKEQREKIVKTAKSSC 186 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 +K+K+++R +R++ M+ LKK + SED V ++ IQ +TD+ +DS F K + Sbjct: 187 DKAKVNIRRVRQNYMNDLKKLK---GVSEDDVYDTKDKIQAMTDNYSNKLDSLFTTKSDD 243 Query: 183 IMH 185 ++ Sbjct: 244 VLR 246 >gi|326532442|dbj|BAK05150.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 260 Score = 97.4 bits (241), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 61/171 (35%), Positives = 94/171 (54%), Gaps = 2/171 (1%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M + L +++ LRTGR SP MLD + VE V L+++A V+VL+ L V +D Sbjct: 89 QMDTAVVALSRELSKLRTGRASPGMLDHIMVETGDVKVGLSRIAVVSVLDSHTLSVMPYD 148 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + S+E I S LG+NP +G + VP T+E A+ KV AE K S+R Sbjct: 149 PNTMKSIENAIASSPLGINPTPDGSRIIAAVPPLTKETMQAMCKVVTKSAEDFKQSIRRA 208 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 R+ +D +KKS S +D + LE +++++T IK+ D + K+KEI Sbjct: 209 RQKALDTIKKS--SSSMPKDDIKRLEKEVEELTKKFIKSADDMCKAKEKEI 257 >gi|326930532|ref|XP_003211400.1| PREDICTED: ribosome-recycling factor, mitochondrial-like [Meleagris gallopavo] Length = 267 Score = 97.4 bits (241), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 59/182 (32%), Positives = 96/182 (52%), Gaps = 3/182 (1%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +I+L+ M + LK+D R S LD + V PLNQ+ ++ P Sbjct: 87 IINLEETSADMQAVVEALKEDFNRNLNVRTSQGALDHIIVTTKDGKFPLNQLGQISQKSP 146 Query: 64 RMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 +++VV++ + E A+ + I ES + LNP V+G ++R+PVP+ T E R L K+A Sbjct: 147 QLIVVNMINFPESTAAAMKAIRESGMNLNPEVDGTLIRVPVPKVTREHREGLAKLAKQST 206 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 KSK ++R +R ++ +KK + K SED + LE IQ++ DS +D K KE Sbjct: 207 NKSKEALRKVRSKSINQVKKFK--SKVSEDTIWLLEKQIQQMADSAAAEMDKLLAAKTKE 264 Query: 183 IM 184 ++ Sbjct: 265 LL 266 >gi|50757135|ref|XP_415395.1| PREDICTED: similar to Mitochondrial ribosome recycling factor [Gallus gallus] Length = 259 Score = 97.4 bits (241), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 59/182 (32%), Positives = 96/182 (52%), Gaps = 3/182 (1%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +I+L+ M + LK+D R S LD + V PLNQ+ ++ P Sbjct: 79 IINLEETNTDMQAVVEALKEDFNRNLNVRTSQGALDHIIVTTKDGKFPLNQLGQISQKSP 138 Query: 64 RMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 +++VV++ E A+ + I ES + LNP V+G ++R+PVP+ T E R +L K+A Sbjct: 139 QLIVVNMTSFPESTAAAMKAIRESGMNLNPEVDGTLIRVPVPKVTREHRESLAKLAKQST 198 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 KSK ++R +R ++ +KK + K SED + LE IQ++ DS +D K KE Sbjct: 199 NKSKEALRKVRSKSVNQVKKFK--SKVSEDTIWLLEKQIQQMADSAAAEMDKLLAAKTKE 256 Query: 183 IM 184 ++ Sbjct: 257 LL 258 >gi|292558632|gb|ADE31633.1| Ribosome recycling factor [Streptococcus suis GZ1] Length = 120 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 50/119 (42%), Positives = 78/119 (65%) Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK ++ +ER ++ S+LGL P +G V+R+ +P TEE R L K E SK Sbjct: 1 MITPFDKSILKDIERALNASDLGLTPQSDGTVIRLVIPALTEETRKNLAKDVKKVGENSK 60 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +++RNIRRD MD KK+ K+ + +ED + +LE DIQK+TD IK ID +K+KE++ Sbjct: 61 VAIRNIRRDAMDEAKKAEKAKEITEDELKTLEKDIQKVTDDAIKTIDKMTADKEKELLE 119 >gi|297710938|ref|XP_002832116.1| PREDICTED: ribosome-recycling factor, mitochondrial-like [Pongo abelii] Length = 262 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 56/182 (30%), Positives = 98/182 (53%), Gaps = 3/182 (1%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +I+L+ + + M I LK + R SP LD + V + LNQ++ +++ P Sbjct: 82 IINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMKSP 141 Query: 64 RMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 ++++V++ E A+ + I ES + LNP VEG ++R+P+P+ E R LVK+A Sbjct: 142 QLILVNMASFPECTAAAIKAIRESGMNLNPEVEGALIRVPIPQVIREHREMLVKLAKQNT 201 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 K+K S+ + + M+ LKKS+ + SED + E I ++ D T+ +D K KE Sbjct: 202 NKAKYSLWKVCTNAMNKLKKSKDT--VSEDTIRLTEKQISQMADDTVAELDRHLAVKTKE 259 Query: 183 IM 184 ++ Sbjct: 260 LL 261 >gi|301633271|gb|ADK86825.1| ribosome recycling factor [Mycoplasma pneumoniae FH] Length = 185 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 99/179 (55%), Gaps = 4/179 (2%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K+ +LK+++ +RTGR +P + D + VE+YG +P+ +A + V PR + Sbjct: 8 LNFFKETADKKFQWLKEELSKIRTGRPNPKLFDNILVESYGDRMPMVALAQIAVNPPREI 67 Query: 67 VVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 V+ +D K + ++ I +NLG+ P+++G +RI P T+E RL +K A E+ Sbjct: 68 VIKPFDVKNNINAIYSEIQRANLGVQPVIDGDKIRINFPPMTQESRLESIKQAKKVVEQI 127 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +R++RRD + +K K ED L+ +++K+ I +++ ++K+KE++ Sbjct: 128 HQELRSVRRDTLQMIK---KDDHKDEDFEEFLKEEVEKVNKQYIAQLETIQKQKEKELL 183 >gi|226508144|ref|NP_001149112.1| LOC100282734 [Zea mays] gi|195624822|gb|ACG34241.1| ribosome recycling factor [Zea mays] gi|238015350|gb|ACR38710.1| unknown [Zea mays] Length = 259 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 62/171 (36%), Positives = 94/171 (54%), Gaps = 2/171 (1%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M + L +++ LRTGR +P MLD + VE V LN++A V+VL+ L V +D Sbjct: 88 QMDAAVIALSRELSKLRTGRATPGMLDHIMVENADVKVALNRIAVVSVLDAHTLSVMPYD 147 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + S+E I S LG+NP +G + +P T+E AL KV AE K S+R Sbjct: 148 PTSMKSIEHAIISSPLGINPTPDGNRIIAAIPPLTKENIQALCKVVTKSAEDFKQSIRRA 207 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 R+ +D +KKS S +D V +E +I+++T IK+ D + K+KEI Sbjct: 208 RQKALDTIKKSASS--MPKDDVKRIEKEIEELTKKFIKSSDDMCKAKEKEI 256 >gi|119607927|gb|EAW87521.1| mitochondrial ribosome recycling factor, isoform CRA_b [Homo sapiens] Length = 319 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 94/166 (56%), Gaps = 3/166 (1%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +I+L+ + + M I LK + R SP LD + V + LNQ++ +++ P Sbjct: 156 IINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMKSP 215 Query: 64 RMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 ++++V++ E A+ + I ES + LNP VEG ++R+P+P+ T E R LVK+A Sbjct: 216 QLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPQVTREHREMLVKLAKQNT 275 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDST 168 K+K S+R +R + M+ LKKS+ + SED + +E I ++ D T Sbjct: 276 NKAKDSLRKVRTNSMNKLKKSKDT--VSEDTIRLIEKQISQMADDT 319 >gi|6091742|gb|AAF03454.1|AC010797_30 putative ribosome recycling factor [Arabidopsis thaliana] Length = 284 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/189 (34%), Positives = 102/189 (53%), Gaps = 20/189 (10%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M I L +D+ LRTGR +P MLD + VE G +PLN +A V+VL+P+ L V+ +D Sbjct: 95 QMEAAIDALSRDLTKLRTGRAAPGMLDHIVVETGGVKMPLNHLALVSVLDPKTLSVNPYD 154 Query: 73 KEMVASVERGIHESNLGLNPIVEGQ--VLRIPVPETTE-----ERRL-----------AL 114 + V +E+ I S LGLNP ++GQ V IP E++ RL A+ Sbjct: 155 PDTVKELEKAIVASPLGLNPKLDGQRLVASIPAYESSSLSNFISLRLSLDPIYLYELQAM 214 Query: 115 VKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDS 174 K+ +E K S+R R+ +D +KK+ S +D V LE ++ ++T +K+ + Sbjct: 215 CKIVTKSSEVVKQSIRRARQKALDTIKKAGSS--LPKDEVKRLEKEVDELTKKFVKSAED 272 Query: 175 FFEEKKKEI 183 + K+KEI Sbjct: 273 MCKSKEKEI 281 >gi|118404150|ref|NP_001072392.1| mitochondrial ribosome recycling factor [Xenopus (Silurana) tropicalis] gi|111305781|gb|AAI21590.1| mitochondrial ribosome recycling factor [Xenopus (Silurana) tropicalis] Length = 252 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 95/182 (52%), Gaps = 3/182 (1%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +I+L+++K M + LK+D + R SP D + V PLNQ+ +++ P Sbjct: 72 IINLEDVKQEMKSILENLKEDFTKNLSIRTSPGAFDHITVTTKDGKFPLNQLGQISLKSP 131 Query: 64 RMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 ++ ++++ E + + +S + LNP ++G ++R+PVP+ T E R L K+A Sbjct: 132 QLFIINMASFPESATAAVNALRDSQMNLNPELDGTIIRVPVPQVTREHRENLTKLAKQLT 191 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 K+K S+R R + +KK ++ SED+V LE IQ++ D +D K KE Sbjct: 192 NKAKDSLRKARTGAVQEVKKCKEG--VSEDIVKLLEKQIQQMADDIATELDKQLATKTKE 249 Query: 183 IM 184 ++ Sbjct: 250 LL 251 >gi|13508375|ref|NP_110325.1| ribosome releasing factor [Mycoplasma pneumoniae M129] gi|2500646|sp|P75161|RRF_MYCPN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|1673870|gb|AAB95854.1| ribosome releasing factor [Mycoplasma pneumoniae M129] Length = 184 Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 99/179 (55%), Gaps = 4/179 (2%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K+ +LK+++ +RTGR +P + D + VE+YG +P+ +A + V PR + Sbjct: 7 LNFFKETADKKFQWLKEELSKIRTGRPNPKLFDNLLVESYGDRMPMVALAQIAVNPPREI 66 Query: 67 VVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 V+ +D K + ++ I +NLG+ P+++G +RI P T+E RL +K A E+ Sbjct: 67 VIKPFDVKNNINAIYSEIQRANLGVQPVIDGDKIRINFPPMTQESRLESIKQAKKVVEQI 126 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +R++RRD + +K K ED L+ +++K+ I +++ ++K+KE++ Sbjct: 127 HQELRSVRRDTLQMIK---KDDHKDEDFEEFLKEEVEKVNKQYIAQLETIQKQKEKELL 182 >gi|126294057|ref|XP_001364967.1| PREDICTED: hypothetical protein [Monodelphis domestica] Length = 262 Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 56/182 (30%), Positives = 98/182 (53%), Gaps = 3/182 (1%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +I L+ + M + LK + R SP LD + V LN + +++ P Sbjct: 82 IICLEEVDVEMKSVVEALKDNFNKNLNIRTSPGSLDHITVTTGDGKFALNHIGQISLKSP 141 Query: 64 RMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 ++++V++ + E A+ + I ES + LNP V+G V+R+P+P+ T E R LVK+A Sbjct: 142 QLILVNMTNFPECTAAAIKAIRESGMNLNPEVDGTVIRVPIPKVTREHREMLVKLAKQNT 201 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 K+K ++R +R + M+ LKKS+ S +ED + +E I ++ D T+ +D K KE Sbjct: 202 NKAKDNLRKVRTNAMNKLKKSKDS--VAEDTIKLIEKQIGQMADDTVAEMDKHLALKTKE 259 Query: 183 IM 184 ++ Sbjct: 260 LL 261 >gi|149019535|ref|ZP_01834854.1| ribosome recycling factor [Streptococcus pneumoniae SP23-BS72] gi|147930910|gb|EDK81890.1| ribosome recycling factor [Streptococcus pneumoniae SP23-BS72] Length = 111 Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 46/108 (42%), Positives = 68/108 (62%) Query: 79 VERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMD 138 +ER ++ S LG+ P +G V+R+ +P TEE R L K E +K++VRNIRRD MD Sbjct: 4 IERALNASELGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAVRNIRRDAMD 63 Query: 139 HLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 KK K+ + +ED + +LE DIQK+TD +K+ID K+KE++ Sbjct: 64 EAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELLEV 111 >gi|309800201|ref|ZP_07694384.1| ribosome recycling factor [Streptococcus infantis SK1302] gi|308116172|gb|EFO53665.1| ribosome recycling factor [Streptococcus infantis SK1302] Length = 111 Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 46/108 (42%), Positives = 68/108 (62%) Query: 79 VERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMD 138 +ER ++ S+LG+ P +G V+R+ +P TEE R L K E +K+++RNIRRD MD Sbjct: 4 IERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAIRNIRRDAMD 63 Query: 139 HLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 KK K+ + +ED + +LE DIQK TD +K+ID K+KEI+ Sbjct: 64 EAKKQEKAKEITEDELKTLEKDIQKATDDAVKHIDEMTANKEKEILEV 111 >gi|72063711|ref|XP_792740.1| PREDICTED: similar to Mitochondrial ribosome recycling factor [Strongylocentrotus purpuratus] gi|115959633|ref|XP_001188854.1| PREDICTED: similar to Mitochondrial ribosome recycling factor [Strongylocentrotus purpuratus] Length = 188 Score = 94.7 bits (234), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 54/184 (29%), Positives = 100/184 (54%), Gaps = 3/184 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 + ++DL ++K+ M + I LKKD + T R S LD + V PLNQ+ +T Sbjct: 5 DDILDLNDVKENMQNAIDALKKDYTSTLTIRTSQGALDHLLVITPDGKFPLNQLGQMTSK 64 Query: 62 EPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + V++ + + + + I ++ + LNP +EG V+++P+P+ T+E R LVK A Sbjct: 65 SSSSITVNLTNFPQATEAAAKAIRDAGMNLNPKIEGSVIQVPIPKVTKEHRENLVKSAKG 124 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 +K+K+++R R + ++K ++ S+D + LE I ++TD+ + D F K Sbjct: 125 MCDKAKVNIRGARSKYISLVRKHKEG--TSKDTIFRLEQQIHQVTDTFNDSADKLFSLKT 182 Query: 181 KEIM 184 KE++ Sbjct: 183 KELL 186 >gi|12045295|ref|NP_073106.1| ribosome recycling factor [Mycoplasma genitalium G37] gi|1350904|sp|P47673|RRF_MYCGE RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|3845028|gb|AAC72456.1| ribosome recycling factor [Mycoplasma genitalium G37] gi|166079045|gb|ABY79663.1| ribosome recycling factor [synthetic Mycoplasma genitalium JCVI-1.0] Length = 183 Score = 94.4 bits (233), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 99/168 (58%), Gaps = 5/168 (2%) Query: 18 ISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD-KEMV 76 I +LK+++ +RTGR +P + D + +E+YG +PL +A VT+ PR +++ +D K Sbjct: 18 IQWLKEELTKIRTGRPNPKIFDNLLIESYGQKMPLISLAQVTINPPREIIIKPFDPKSNT 77 Query: 77 ASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDG 136 ++ I +N+G+ P+++G+ +R+ P+ T+E RL +K E+ +R +RRD Sbjct: 78 NAIYSEIQRANIGVQPVIDGEKIRVNFPQITQETRLENIKHVKKIIEQIYQELRVVRRDA 137 Query: 137 MDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 + +KK +ED+ SL+ +I+KI + ++ ++K+KE++ Sbjct: 138 LQMIKKDN----HNEDLENSLKAEIEKINKNYSNQLEEIQKDKEKELL 181 >gi|15828690|ref|NP_326050.1| ribosome recycling factor (ribosome releasing factor) [Mycoplasma pulmonis UAB CTIP] gi|22001949|sp|Q98QZ1|RRF_MYCPU RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|14089632|emb|CAC13392.1| RIBOSOME RECYCLING FACTOR (RIBOSOME RELEASING FACTOR) [Mycoplasma pulmonis] Length = 187 Score = 94.4 bits (233), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 100/176 (56%), Gaps = 2/176 (1%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 ++++ + +S + ++ + TGR +P ++ +KV Y +PL Q++N++V EP+ L++ Sbjct: 13 LEEKSMNVVSNFEFNLSKISTGRANPQLIKNIKVSYYEELIPLEQISNISVPEPQQLLIK 72 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 +D + + + + +NL + + EG +R+ P +RR LVK + + E++++S+ Sbjct: 73 PFDHNITKEIHKSLLLANLDVAIVNEGNQIRLNFPALNTQRRKELVKSLNKFTEQARVSI 132 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 R +R++ +K + + SED + E IQ I DS I+ ID + K++E+M Sbjct: 133 RLLRQESNKKIKSFK--SEISEDDIKKYETKIQTINDSYIEQIDEITKRKERELME 186 >gi|301094211|ref|XP_002997949.1| ribosome-recycling factor, putative [Phytophthora infestans T30-4] gi|262109735|gb|EEY67787.1| ribosome-recycling factor, putative [Phytophthora infestans T30-4] Length = 259 Score = 94.0 bits (232), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 59/173 (34%), Positives = 92/173 (53%), Gaps = 3/173 (1%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K+ G ++F + + +R GR + D + V AYG HVPL QVA V V L V+V Sbjct: 87 KNMNGAVVNFTRA-LSQMRPGRADAGIFDELHVPAYGQHVPLAQVAQVAVAGTHALSVTV 145 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +D ++ V++ I +N + + L I P+ ++E R L+K AE+++ VR Sbjct: 146 YDPSLMPDVKKAIEGTNAVYSVREDVSSLEISFPKMSKETRADLLKATKKQAEQARQHVR 205 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +R+D M+H KK + + SED V + IQK TDS I ID K+K++ Sbjct: 206 RVRQDAMNHAKKLKDA--VSEDDVEVQKERIQKATDSAIAEIDKLLAAKEKDL 256 >gi|261749578|ref|YP_003257264.1| ribosome recycling factor [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497671|gb|ACX84121.1| ribosome recycling factor [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 184 Score = 94.0 bits (232), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 57/165 (34%), Positives = 95/165 (57%), Gaps = 5/165 (3%) Query: 21 LKKDMMTLRTGRVSP-SMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASV 79 L++++ +R G S +L+ +K++ Y S PL +VA +T+++ + + WD+ +++ + Sbjct: 22 LQEEIHRIRLGSKSVVPLLEKIKIKCYASFFPLIEVATITIVDNMNITIHPWDRAIISYI 81 Query: 80 ERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDH 139 ++ I + NLG P +G+ + I +P TEE R L+K EK+KI VR R+ Sbjct: 82 DKAIIDENLGFMPTNKGESIHIRLPILTEEGRKNLMKKIKTQTEKAKIFVRTTRK----K 137 Query: 140 LKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +S K K SED+ EN IQKIT +I+ ID F K+KEI+ Sbjct: 138 YNQSIKRLKISEDLSKIGENRIQKITKVSIQKIDVLFFSKEKEIL 182 >gi|308190230|ref|YP_003923161.1| ribosome recycling factor [Mycoplasma fermentans JER] gi|319777597|ref|YP_004137248.1| ribosome-recycling factor [Mycoplasma fermentans M64] gi|238810012|dbj|BAH69802.1| hypothetical protein [Mycoplasma fermentans PG18] gi|307624972|gb|ADN69277.1| ribosome recycling factor [Mycoplasma fermentans JER] gi|318038672|gb|ADV34871.1| Ribosome-recycling factor [Mycoplasma fermentans M64] Length = 183 Score = 94.0 bits (232), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 94/162 (58%), Gaps = 5/162 (3%) Query: 24 DMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGI 83 ++ + TGR +P ++ V++ Y + PL ++A++TV EP+ L++ +D + + I Sbjct: 24 ELSKISTGRANPQLIKGVRINYYDTLTPLEELASITVPEPQQLLIKPFDVSCNHEIAKTI 83 Query: 84 HESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKS 143 +NLGLNP+ EG +RI P T ERR +VK + E +K+++RN R++ + KS Sbjct: 84 LNANLGLNPVDEGNQVRITFPPLTTERRKDMVKSLAKFTENAKVAIRNARQN----VNKS 139 Query: 144 RKSGKA-SEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 K+ + SED ++IQK D I++I+ K+KE+M Sbjct: 140 IKADEELSEDQEKKYLDEIQKEVDKKIEHINKMTINKEKELM 181 >gi|149641896|ref|XP_001512325.1| PREDICTED: similar to mitochondrial ribosome recycling factor [Ornithorhynchus anatinus] Length = 241 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 56/182 (30%), Positives = 99/182 (54%), Gaps = 3/182 (1%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +I+L+ + + + LK D R S LD + V LNQ+A +++ P Sbjct: 61 IINLEEVNRDLQTVMEALKDDFNKNLNIRTSAGALDHISVPTEDGKFSLNQLAQISMKSP 120 Query: 64 RMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 ++++V++ + E A+ + I ES + LNP V+G ++R+P+P+ T E R LVK+A Sbjct: 121 QLVLVNMANFPECTAAAIKAIRESGMNLNPEVDGTIIRVPIPKVTREHREMLVKLAKQNT 180 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 K+K S+R +R + M+ LKKS+ K +ED + +E I ++ D + +D K KE Sbjct: 181 NKAKESLRKVRTNAMNKLKKSK--DKVAEDTIRLIEKKIGQMADDMVAEMDKQLAVKTKE 238 Query: 183 IM 184 ++ Sbjct: 239 LL 240 >gi|224055693|ref|XP_002298606.1| predicted protein [Populus trichocarpa] gi|222845864|gb|EEE83411.1| predicted protein [Populus trichocarpa] Length = 273 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/171 (33%), Positives = 92/171 (53%), Gaps = 2/171 (1%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M + L +++ LRTGR S MLD + VE G +PLN+ A V+V++ + L V+ +D Sbjct: 102 QMDAAVVALSRELQKLRTGRASAGMLDHIIVETDGVKLPLNRSAVVSVMDAKTLSVNPYD 161 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + +E I S LGLNP +G L +P T+E A+ KV E + S+R Sbjct: 162 PNTLKQLENAIVSSPLGLNPQRDGDRLIAAIPPLTKEHTQAMCKVVAKSCEDCRQSIRRA 221 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 R+ MD +KK+ S +D LE +I+++T +K+ + K+KEI Sbjct: 222 RQKAMDTVKKAGSS--FPKDDAKKLEKEIEEMTKKFVKSAEDMCNNKEKEI 270 >gi|325181721|emb|CCA16176.1| ribosomerecycling factor putative [Albugo laibachii Nc14] Length = 267 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 57/184 (30%), Positives = 100/184 (54%), Gaps = 7/184 (3%) Query: 5 IDLQNIKDR----MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 D++ +K + M I + + +R G+ + D V V+AYG VPL Q+A V V Sbjct: 85 FDVEELKSKTRRNMNGAILNFTRQLCQMRPGKADGGIFDTVHVQAYGQSVPLPQLAQVAV 144 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 L V+V+D+ ++ V++ I + N + E L + P+ ++E R L K Sbjct: 145 TGAYSLSVNVYDQSLLQEVKQTIAKINACYSIREEISSLEVTFPKMSKETRSELSKAVKK 204 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE+++ VR +R+D M+ LKKS+ + +ED + +++ IQK+TD I IDS +K+ Sbjct: 205 QAEQARSHVRRVRQDSMNILKKSK---EITEDDLKEIKDAIQKVTDQCISEIDSLLAQKE 261 Query: 181 KEIM 184 K+++ Sbjct: 262 KDLV 265 >gi|291000412|ref|XP_002682773.1| predicted protein [Naegleria gruberi] gi|284096401|gb|EFC50029.1| predicted protein [Naegleria gruberi] Length = 174 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/175 (34%), Positives = 103/175 (58%), Gaps = 5/175 (2%) Query: 13 RMGDTISFLKKDMMTLRTGR-VSPSMLDLVKVEAYG-SHVPLNQVANVTVLEPRMLVVSV 70 +M + +K + LR+G +PS+++ V + S PL +A++ V P+ L ++V Sbjct: 1 KMDKFVQSSQKQLSELRSGSGANPSLVENVMITMNDDSKRPLKSLASIVVKNPKCLTLNV 60 Query: 71 WDKEMVASVERGIHESNLGLNPI-VEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 +DK ++ + I +LGLNP + + IP+P+ T+E R +VK A AE +K + Sbjct: 61 FDKTTTGAISKSIASEDLGLNPQQINENSIDIPIPKMTKEMRENVVKNAKKIAEGAKDKI 120 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 R++RR+GM + K++K G AS+D + E +QK+TD I ID+ ++K+KEIM Sbjct: 121 RDLRRNGMTKI-KAQKEG-ASKDDIFHDEQVLQKLTDDMITKIDNLVDQKEKEIM 173 >gi|28493413|ref|NP_787574.1| ribosome recycling factor [Tropheryma whipplei str. Twist] gi|28572476|ref|NP_789256.1| ribosome recycling factor [Tropheryma whipplei TW08/27] gi|44888329|sp|Q83G73|RRF_TROWT RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|44888330|sp|Q83HZ5|RRF_TROW8 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|28410608|emb|CAD66994.1| ribosome recycling factor [Tropheryma whipplei TW08/27] gi|28476454|gb|AAO44543.1| ribosome recycling factor [Tropheryma whipplei str. Twist] Length = 181 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 101/182 (55%), Gaps = 12/182 (6%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 ++ +RM TI LK+ +++ +GRV+ + V V+ G+ VPL +A++ VL +VV Sbjct: 8 DVSERMNKTIELLKEQFLSIHSGRVNSGQFEKVMVDCEGASVPLVSLASIRVLNANTIVV 67 Query: 69 SVWDKEMVASVERGIHE-SNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +D +++ ++R + N+G P +G+ ++I +P+ TE RR VK A AE++++ Sbjct: 68 TPYDSALLSQIDRALRNVPNIG-TPGNDGECIKIVMPQLTEARRHEYVKQARVKAEEARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKA---SEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 S RNIRR K+R S A ++D + E ++ K+T I +D K+ E++ Sbjct: 127 SARNIRR-------KARASLDAMGLAKDEIVRREKELDKLTKDVISVVDDLLRHKESELL 179 Query: 185 HF 186 Sbjct: 180 RL 181 >gi|294155890|ref|YP_003560274.1| ribosome recycling factor [Mycoplasma crocodyli MP145] gi|291600515|gb|ADE20011.1| ribosome recycling factor [Mycoplasma crocodyli MP145] Length = 183 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 53/180 (29%), Positives = 96/180 (53%), Gaps = 3/180 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L I+D I+ K ++ + TGR +P ++ ++V Y + PL +++N++V EP+ L Sbjct: 7 LLEIEDAAQKAINHYKFELSKMSTGRANPQIIKGIRVTYYDTPTPLEELSNISVPEPQQL 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D V + + + +NLG+ P+ EG +R+ P T ERR +VK Y E +K Sbjct: 67 LIKPYDISSVRDIVKALTNANLGILPVDEGHQIRMTFPTLTTERRKEIVKSLSKYTEAAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RN R+D +K + SED+ IQK D + I+ +EK+ ++M Sbjct: 127 VTIRNARQDVNKSIKNDE---ELSEDIEKRYLEAIQKEVDKYTEIINDLTKEKENDLMKL 183 >gi|311246344|ref|XP_003122165.1| PREDICTED: ribosome-recycling factor, mitochondrial-like isoform 2 [Sus scrofa] Length = 210 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 51/148 (34%), Positives = 87/148 (58%), Gaps = 3/148 (2%) Query: 38 LDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEG 96 LD + V + LNQ+ +++ P++++V++ E A+ + I ES + LNP VEG Sbjct: 64 LDQITVVTADGKLALNQIGQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPDVEG 123 Query: 97 QVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVAS 156 ++R+P+P+ T E R LVK+A K+K S+R +R + M+ LKKS+ KASED + Sbjct: 124 TLIRVPIPKVTREHREMLVKLAKQNTNKAKESLRKVRTNAMNKLKKSK--DKASEDTLRL 181 Query: 157 LENDIQKITDSTIKNIDSFFEEKKKEIM 184 +E I ++ D T+ ++ K KE++ Sbjct: 182 IEKQISQMADDTVAELERHLAVKTKELL 209 >gi|332229927|ref|XP_003264138.1| PREDICTED: ribosome-recycling factor, mitochondrial-like isoform 4 [Nomascus leucogenys] Length = 210 Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 50/148 (33%), Positives = 87/148 (58%), Gaps = 3/148 (2%) Query: 38 LDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEG 96 LD + V + LNQ++ +++ P++++V++ E A+ + I ES + LNP VEG Sbjct: 64 LDKIAVVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEG 123 Query: 97 QVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVAS 156 ++R+P+P+ T E R LVK+A K+K S+R +R + M+ LKKS+ + SED + Sbjct: 124 TLIRVPIPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKLKKSKDT--VSEDTIRL 181 Query: 157 LENDIQKITDSTIKNIDSFFEEKKKEIM 184 +E I ++ D T+ +D K KE++ Sbjct: 182 IEKQISQMADDTVAELDRHLAVKTKELL 209 >gi|291042689|ref|NP_001166983.1| ribosome-recycling factor, mitochondrial isoform 3 precursor [Homo sapiens] gi|221043312|dbj|BAH13333.1| unnamed protein product [Homo sapiens] Length = 210 Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 50/148 (33%), Positives = 87/148 (58%), Gaps = 3/148 (2%) Query: 38 LDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEG 96 LD + V + LNQ++ +++ P++++V++ E A+ + I ES + LNP VEG Sbjct: 64 LDKIAVVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEG 123 Query: 97 QVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVAS 156 ++R+P+P+ T E R LVK+A K+K S+R +R + M+ LKKS+ + SED + Sbjct: 124 TLIRVPIPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKLKKSKDT--VSEDTIRL 181 Query: 157 LENDIQKITDSTIKNIDSFFEEKKKEIM 184 +E I ++ D T+ +D K KE++ Sbjct: 182 IEKQISQMADDTVAELDRHLAVKTKELL 209 >gi|27365210|ref|NP_760738.1| ribosome recycling factor [Vibrio vulnificus CMCP6] gi|27361357|gb|AAO10265.1| Ribosome recycling factor [Vibrio vulnificus CMCP6] Length = 104 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 41/97 (42%), Positives = 64/97 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK + +RTGR PS+L + V+ YG+ PL QVANV + R L Sbjct: 7 KDAQERMEKSVEALKNSLSKVRTGRAHPSLLSGISVDYYGAATPLTQVANVIAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVP 104 ++V+DKE+ VE+ I S+LGLNP+ G V+R+P+P Sbjct: 67 ITVFDKELTQKVEKAIMMSDLGLNPMSAGTVIRVPLP 103 >gi|328479954|gb|EGF49002.1| ribosome recycling factor [Lactobacillus rhamnosus MTCC 5462] Length = 129 Score = 91.3 bits (225), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 46/115 (40%), Positives = 75/115 (65%), Gaps = 2/115 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 NQ+I+ K MG T L++++ +R GR + S+L+ + V+ YG+ PLNQ+A +TV Sbjct: 3 NQIIE--QAKVNMGKTEESLQRELGNIRAGRANASLLNQITVDYYGAPTPLNQMAAITVP 60 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVK 116 E R+L +S +DK + ++E I+ S+LG+NP +G V+R+ +P+ T ERR L K Sbjct: 61 EARVLQISPYDKSSLKNIETAINASDLGINPANDGDVIRLVIPQLTGERRKELPK 115 >gi|332229925|ref|XP_003264137.1| PREDICTED: ribosome-recycling factor, mitochondrial-like isoform 3 [Nomascus leucogenys] Length = 284 Score = 91.3 bits (225), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 50/148 (33%), Positives = 87/148 (58%), Gaps = 3/148 (2%) Query: 38 LDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEG 96 LD + V + LNQ++ +++ P++++V++ E A+ + I ES + LNP VEG Sbjct: 138 LDKIAVVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEG 197 Query: 97 QVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVAS 156 ++R+P+P+ T E R LVK+A K+K S+R +R + M+ LKKS+ + SED + Sbjct: 198 TLIRVPIPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKLKKSKDT--VSEDTIRL 255 Query: 157 LENDIQKITDSTIKNIDSFFEEKKKEIM 184 +E I ++ D T+ +D K KE++ Sbjct: 256 IEKQISQMADDTVAELDRHLAVKTKELL 283 >gi|159478729|ref|XP_001697453.1| predicted protein [Chlamydomonas reinhardtii] gi|158274332|gb|EDP00115.1| predicted protein [Chlamydomonas reinhardtii] Length = 175 Score = 91.3 bits (225), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 55/179 (30%), Positives = 100/179 (55%), Gaps = 9/179 (5%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 +RM ++ + T+RTGR +P++LD + V+ +G+ PL Q+ VTV + L+++ + Sbjct: 2 ERMKKCLAVVGDGFNTIRTGRANPAILDKITVDYFGAPTPLKQMGTVTVPDASTLMITPF 61 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH-AYAEKSKISVR 130 DK + +ER I ES++G+NP +G+ +R+ +P T+ RR AH +A + ++V Sbjct: 62 DKTSLRDIERAIQESDIGINPNNDGERIRLIMPPMTQVRRR---DGAHLVWAGGAGVAV- 117 Query: 131 NIRRDGMDHLKKSRKSGKASE---DMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++ G K E D +LE+DIQK+TD+ +K ++ + K +E+M Sbjct: 118 -VQACGTSTEKPPHPPPDTVELPKDDKKALEDDIQKLTDTYVKKVEDAAKAKTEEVMKL 175 >gi|260810957|ref|XP_002600189.1| hypothetical protein BRAFLDRAFT_204166 [Branchiostoma floridae] gi|229285475|gb|EEN56201.1| hypothetical protein BRAFLDRAFT_204166 [Branchiostoma floridae] Length = 206 Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 101/184 (54%), Gaps = 3/184 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 ++V D++ ++ +M + LK++ + + R S LD + V+ PLN + + + Sbjct: 24 SEVTDIETVRGKMQKALDALKEEYVKNLSLRTSVGSLDSISVQTVNGRFPLNHLGQIVMK 83 Query: 62 EPRMLVVS-VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 P+M V+ V + + SV + I +S + LNPI EG V+++P+P+ T+E R L K A A Sbjct: 84 SPQMYHVNMVGAPQEIPSVLQAISQSGMNLNPIQEGNVIKVPIPKVTKEHRENLAKKAKA 143 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 K+K +R+IR M KK++ + SED V +E IQ++TD N + E K Sbjct: 144 GCNKTKEQIRDIRNQAMKEAKKAKAT--VSEDTVRLVEKQIQQLTDDFNGNAEKILEAKS 201 Query: 181 KEIM 184 KE++ Sbjct: 202 KELL 205 >gi|332832794|ref|XP_003312315.1| PREDICTED: ribosome-recycling factor, mitochondrial [Pan troglodytes] Length = 284 Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 50/148 (33%), Positives = 87/148 (58%), Gaps = 3/148 (2%) Query: 38 LDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEG 96 LD + V + LNQ++ +++ P++++V++ E A+ + I ES + LNP VEG Sbjct: 138 LDKIAVVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEG 197 Query: 97 QVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVAS 156 ++R+P+P+ T E R LVK+A K+K S+R +R + M+ LKKS+ + SED + Sbjct: 198 TLIRVPIPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKLKKSKYT--VSEDTIRL 255 Query: 157 LENDIQKITDSTIKNIDSFFEEKKKEIM 184 +E I ++ D T+ +D K KE++ Sbjct: 256 IEKQISQMADDTVAELDRHLAVKTKELL 283 >gi|145349027|ref|XP_001418942.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144579172|gb|ABO97235.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 238 Score = 90.5 bits (223), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 4/179 (2%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 D + + + + L D+ LRT R S M+D + V+ YG PL+ + +T + Sbjct: 62 DAKEWQSKFDAALHALDVDLSQLRTARASAGMIDHIIVDVYGEPTPLSHLGTITAPNAQT 121 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 L V+++D SVE+ I S LG P L +P+P T++ R + K+A E + Sbjct: 122 LSVTLFDPSTKPSVEKAIVNSPLGFVPKESSDGLIVPIPAMTQDTRKEVCKLASKLGETA 181 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 KI+ RNIR +K++ + SED E ++Q +TD + I K+KEIM Sbjct: 182 KIAARNIRHKAQKRIKRA----EMSEDDRKRAEKNLQALTDDIVGKITQRCAAKEKEIM 236 >gi|240047787|ref|YP_002961175.1| Ribosome recycling factor [Mycoplasma conjunctivae HRC/581] gi|239985359|emb|CAT05372.1| Ribosome recycling factor [Mycoplasma conjunctivae] Length = 186 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 88/165 (53%), Gaps = 4/165 (2%) Query: 21 LKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVE 80 L K+ + GR +P ++ ++V+ YG+ P+N++AN++V L+V +D ++ S+ Sbjct: 25 LDKNFNKINIGRANPQIISHIRVDYYGAPTPINEIANISVPSALQLLVKPYDISLINSIT 84 Query: 81 RGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHL 140 + + E +R+ PE T E+R LVK Y E++K+ +R IR+D + Sbjct: 85 STLVAHKIEAQIQKEANQIRLVFPELTTEKRKELVKSIKKYEEEAKVKIRLIRQDVNKLI 144 Query: 141 KKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 KK SED + N IQK DS IK ID FEEK K +++ Sbjct: 145 KKE----DLSEDEEKNYLNQIQKTIDSKIKEIDKIFEEKSKLLLN 185 >gi|194246630|ref|YP_002004269.1| ribosome recycling factor [Candidatus Phytoplasma mali] gi|193806987|emb|CAP18422.1| Ribosome recycling factor [Candidatus Phytoplasma mali] Length = 185 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 110/187 (58%), Gaps = 7/187 (3%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 MN++ L N++++M + + K++ ++RT +P++LD + + YG ++ L Q+++++V Sbjct: 5 MNEI--LTNVENKMQKSSIEMLKELSSIRTDISNPNVLDKININYYGENISLKQLSSISV 62 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNP-IVEGQVLRIPVPETTEERRLALVKVAH 119 +E L + +D ++ +++ I S+LG+NP +V ++++ P TEERR +L+K Sbjct: 63 VEGNQLNIKPYDIKITDQIKKAILASDLGINPEVVNNSLIKLIFPPLTEERRKSLIKQVE 122 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 +E K+ +RNIRR+G + + K+ ++D+ Q +TD I+ I+ +K Sbjct: 123 KISENVKVVIRNIRREGNNKI----KTMILTKDLELLFLKKNQILTDKYIELIEKQTNDK 178 Query: 180 KKEIMHF 186 KKE++ Sbjct: 179 KKELLKI 185 >gi|312876745|ref|ZP_07736724.1| ribosome recycling factor [Caldicellulosiruptor lactoaceticus 6A] gi|311796476|gb|EFR12826.1| ribosome recycling factor [Caldicellulosiruptor lactoaceticus 6A] Length = 108 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 44/100 (44%), Positives = 66/100 (66%) Query: 86 SNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRK 145 S+LG+NP +G+V+R+ PE TEERR LVK AE +K+++RNIRR+ +D KK +K Sbjct: 8 SDLGVNPTNDGKVIRLIFPELTEERRKELVKQVKKMAEDAKVAIRNIRREALDEYKKMKK 67 Query: 146 SGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 + + +ED + E D+QK+ D I+ I+ K+KEIM Sbjct: 68 NNEITEDDLKDAEEDVQKLHDKYIEQIEKLLSAKEKEIME 107 >gi|281337698|gb|EFB13282.1| hypothetical protein PANDA_004028 [Ailuropoda melanoleuca] Length = 238 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 88/159 (55%), Gaps = 3/159 (1%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +I L+ + + M + LK + R SP LD + V + LNQ+ +++ P Sbjct: 82 IISLEEVDEEMKSVMEALKDNFNKTVNIRTSPGSLDHITVVTADGKLALNQIGQISMKSP 141 Query: 64 RMLVVS-VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 ++++V+ V E A+ + I ES + LNP VEG ++R+P+P+ T E R LVK+A Sbjct: 142 QLILVNMVSFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPKVTREHREMLVKLAKQNT 201 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDI 161 K+K S+R +R + M+ LKKS+ K SED + +E + Sbjct: 202 NKAKDSLRKVRTNAMNKLKKSK--DKVSEDTIRLIEKQV 238 >gi|147799481|emb|CAN77406.1| hypothetical protein VITISV_026196 [Vitis vinifera] Length = 222 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 44/119 (36%), Positives = 75/119 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +++K+RM TI ++ + ++RTGR +P++LD V+VE YG+ V L +A ++ + L+ Sbjct: 96 KDVKERMEKTIETVRTNFNSIRTGRANPAILDRVEVEYYGTPVSLKSIAQISTPDSASLL 155 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V +DK + +E+ I S+LGL P +G+V+R+ +P+ T ERR L KV E+ K Sbjct: 156 VQPYDKSSLKVIEKAIVSSDLGLTPNNDGEVIRLSLPQLTSERRKELSKVVAKQTEEGK 214 >gi|156385498|ref|XP_001633667.1| predicted protein [Nematostella vectensis] gi|156220740|gb|EDO41604.1| predicted protein [Nematostella vectensis] Length = 191 Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 60/184 (32%), Positives = 99/184 (53%), Gaps = 5/184 (2%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 ++D IK M TI LK+D + T ++ P LD ++V L ++A + + Sbjct: 10 LVDFSKIKANMESTIDKLKQDYTSKITVQILPDALDNIRVTTRSGKSTLAELAEIRMKGD 69 Query: 64 RMLVV--SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 M V+ S K+ A+ + I ES + P+V+ + I +P+ T+E R LVK+A Sbjct: 70 NMFVIDMSSSPKDTKAAAQ-AIKESRINFEPVVDNTTITISIPKVTQEYRQDLVKLARQA 128 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 E+SK ++R +R+ GM ++K+ K G+ SED V +E IQ++TD + D EEK K Sbjct: 129 CEQSKQNLRRVRQKGMADVRKN-KQGR-SEDEVKQVEKMIQQLTDEYSSDTDLLVEEKTK 186 Query: 182 EIMH 185 E++ Sbjct: 187 ELLR 190 >gi|223994925|ref|XP_002287146.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220976262|gb|EED94589.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 179 Score = 87.8 bits (216), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 54/175 (30%), Positives = 92/175 (52%), Gaps = 8/175 (4%) Query: 18 ISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVA 77 I+ L++ ++R G + + D V+V AYG VPL+ V V + +P+ +S +D + Sbjct: 5 IASLERSFSSIRGGEATAELFDAVRVSAYGETVPLSSVGQVVIEDPQRATISCYDPSVSN 64 Query: 78 SVERGIHE-SNLGLNPIVE---GQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 V + + + LNP VE V+ +P+P +EE R +VK AE + VR IR Sbjct: 65 DVRDAVRDMPGMNLNPYVEEGGSGVVIVPIPRVSEETRKEIVKELGRQAENGRQRVRKIR 124 Query: 134 RDGMDHLKKSRKSGK---ASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 R+ MD +KK K GK S+D + D++ +T+ + ++ E+K+K +M Sbjct: 125 REAMDVVKKG-KDGKLEGISKDDAFRVGKDVEGVTEEVLAVLNDIVEKKQKSVME 178 >gi|149038905|gb|EDL93125.1| rCG45505 [Rattus norvegicus] Length = 239 Score = 87.8 bits (216), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 88/159 (55%), Gaps = 3/159 (1%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +I L+ + + M + LK + R +P LD + V + LNQ+ +++ P Sbjct: 82 IISLEEVDEDMKSVMEALKDNFNKTLNIRTAPGSLDHITVVTADGKLALNQIGQISMKSP 141 Query: 64 RMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 ++++V++ E A+ + I ES + LNP VEG ++R+P+P+ T E R LVK+A Sbjct: 142 QLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPKVTREHREMLVKLAKQNT 201 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDI 161 K+K ++R +R + M+ LKKS+ K SED + +E I Sbjct: 202 NKAKENLRKVRTNAMNKLKKSK--DKTSEDTIRLIEKQI 238 >gi|114690061|ref|XP_521248.2| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes] gi|332861573|ref|XP_003317710.1| PREDICTED: ribosome-recycling factor, mitochondrial-like [Pan troglodytes] Length = 262 Score = 87.8 bits (216), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 94/182 (51%), Gaps = 3/182 (1%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +I+L+ + + M I K + R SP LD + V + LNQ+ ++V P Sbjct: 82 IINLEEVNEEMKSVIEAHKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQIRQISVKLP 141 Query: 64 RMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 ++++V++ E + + I ES + LNP VEG ++R+P+P+ E R LVK+A Sbjct: 142 QLILVNMASFPECTVAAIKAIRESGMNLNPEVEGTLIRVPIPQVIREHREMLVKLAKQNT 201 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 K+K S+ + + M+ LKKS+ + SED + E I ++ D T+ + K KE Sbjct: 202 NKAKYSLLKVCTNAMNKLKKSKDT--VSEDTIRLTEKQISQMADDTVAELYRHLAVKNKE 259 Query: 183 IM 184 ++ Sbjct: 260 LL 261 >gi|255660062|ref|ZP_05405471.1| ribosome recycling factor [Mycoplasma genitalium G37] Length = 161 Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 87/147 (59%), Gaps = 5/147 (3%) Query: 18 ISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD-KEMV 76 I +LK+++ +RTGR +P + D + +E+YG +PL +A VT+ PR +++ +D K Sbjct: 18 IQWLKEELTKIRTGRPNPKIFDNLLIESYGQKMPLISLAQVTINPPREIIIKPFDPKSNT 77 Query: 77 ASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDG 136 ++ I +N+G+ P+++G+ +R+ P+ T+E RL +K E+ +R +RRD Sbjct: 78 NAIYSEIQRANIGVQPVIDGEKIRVNFPQITQETRLENIKHVKKIIEQIYQELRVVRRDA 137 Query: 137 MDHLKKSRKSGKASEDMVASLENDIQK 163 + +KK +ED+ SL+ +I+K Sbjct: 138 LQMIKKD----NHNEDLENSLKAEIRK 160 >gi|148676726|gb|EDL08673.1| mCG22269 [Mus musculus] Length = 237 Score = 87.4 bits (215), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 87/156 (55%), Gaps = 3/156 (1%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +I L+ + + M + LK + R +P LD + V V LNQ+ +++ P Sbjct: 82 IISLEEVDEDMKSVVEALKDNFNKTLNIRTAPGSLDHITVVTADGKVALNQIGQISMKSP 141 Query: 64 RMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 ++++V++ E A+ + I ES + LNP VEG ++R+P+P+ T E R LVK+A Sbjct: 142 QVILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPKVTREHREMLVKLAKQNT 201 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLE 158 K+K ++R +R + M+ LKKS+ K SED + +E Sbjct: 202 NKAKENLRKVRTNAMNKLKKSK--DKTSEDTIRLIE 235 >gi|159490140|ref|XP_001703044.1| predicted protein [Chlamydomonas reinhardtii] gi|158270857|gb|EDO96689.1| predicted protein [Chlamydomonas reinhardtii] Length = 277 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 96/188 (51%), Gaps = 17/188 (9%) Query: 3 QVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEA------YGSHVPLNQVA 56 Q D++ +MG+ + L++ + +RTGR SP +L+ V VEA +G HVPL + Sbjct: 96 QEWDIEPFVTQMGEALDHLRRKLAGIRTGRASPGLLEAVSVEARSSGSSHGPHVPLRVLG 155 Query: 57 NVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVE-GQVLRIPVPETTEERRLALV 115 V P++LV D + VA + I S L L E G+VL +PVP + E V Sbjct: 156 TVVARGPQLLV----DDKAVA---KAIQNSPLKLQARAENGEVL-VPVPRLSLEMVKGFV 207 Query: 116 KVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSF 175 K+A AE ++ +VR +R ++ K G A E + +E +Q +TD I+ +D Sbjct: 208 KLAAQEAEAARKAVRAVRHRALEQAKLCNTGGPAGE--LKRMEQQVQALTDKHIREVDGL 265 Query: 176 FEEKKKEI 183 K++++ Sbjct: 266 LRAKERDL 273 >gi|119632273|gb|EAX11868.1| hCG1980694, isoform CRA_a [Homo sapiens] Length = 262 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 96/183 (52%), Gaps = 5/183 (2%) Query: 4 VIDLQNIKDRMGDTISFLKKDM-MTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLE 62 +I+L+ + + M I K + TL G SP LD + V + LNQ+ ++V Sbjct: 82 IINLEEVNEEMKSVIEARKDNFNKTLNIG-TSPGSLDKIAVVTADGKLALNQIRQISVKL 140 Query: 63 PRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 P++++V++ E + + I ES + LNP VEG ++R+P+P+ E R LVK+A Sbjct: 141 PQLILVNMASFPEFTVAAIKAIRESGMNLNPEVEGTLIRVPIPQVIREHREMLVKLAKQN 200 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 K+K S+R + + M+ LKKS+ + SE + E I ++ D T+ + K K Sbjct: 201 TNKAKYSLRKVCTNAMNKLKKSKDT--VSEGTIRLTEKQISQMADDTVAELYRHLAVKTK 258 Query: 182 EIM 184 E++ Sbjct: 259 ELL 261 >gi|269115236|ref|YP_003302999.1| ribosome recycling factor [Mycoplasma hominis] gi|268322861|emb|CAX37596.1| Ribosome recycling factor (Ribosome releasingfactor)(RRF) [Mycoplasma hominis ATCC 23114] Length = 183 Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 100/178 (56%), Gaps = 3/178 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + + + +I + +M + GR +P ++ +K+E YGS + + ++A++T P L Sbjct: 7 LLELDEEISKSIVNYENQLMKVVIGRANPVLISKIKLEYYGSPISVEEIASITTSGPLQL 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V +D ++ ++E+ I ++ + ++ I EG LR+ P+ T E+R+ + K + E+++ Sbjct: 67 IVKPYDMSVLKNIEKAIMDNKINVSIINEGHQLRLQYPQMTTEKRVEMTKQLASITEQAR 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 I VR R+D KK + SED+ ++IQK D +I+ I+ + K+KE++ Sbjct: 127 IGVRQARQDIN---KKIKADSDLSEDIQKHYLDNIQKEVDKSIEKINEMSKTKEKELL 181 >gi|148670215|gb|EDL02162.1| mCG10533, isoform CRA_b [Mus musculus] Length = 264 Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 94/179 (52%), Gaps = 3/179 (1%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +I L+ + + M + LK + R + LD + V V L+Q+ +++ P Sbjct: 82 IISLEEVDEDMKSVMEALKDNFNRTLNIRTASGSLDHITVVTADGKVALSQIGQISMKSP 141 Query: 64 RMLVVSVW-DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 ++++V++ E A+ + I S + LNP VEG ++R+P+P+ T E R LVK+A Sbjct: 142 QVILVNMAIFPECTAAAIKAIRGSRMNLNPEVEGTLIRVPIPKLTREHREMLVKLAKQNT 201 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 K+K ++R + + M+ LKKS+ K SED + +E I +I D T+ +D + K Sbjct: 202 NKAKENLRKVCTNAMNKLKKSK--DKTSEDTIRLMEKQISQIADDTVAELDQHLAARPK 258 >gi|148670214|gb|EDL02161.1| mCG10533, isoform CRA_a [Mus musculus] Length = 332 Score = 84.7 bits (208), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 94/179 (52%), Gaps = 3/179 (1%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +I L+ + + M + LK + R + LD + V V L+Q+ +++ P Sbjct: 82 IISLEEVDEDMKSVMEALKDNFNRTLNIRTASGSLDHITVVTADGKVALSQIGQISMKSP 141 Query: 64 RMLVVSVW-DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 ++++V++ E A+ + I S + LNP VEG ++R+P+P+ T E R LVK+A Sbjct: 142 QVILVNMAIFPECTAAAIKAIRGSRMNLNPEVEGTLIRVPIPKLTREHREMLVKLAKQNT 201 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 K+K ++R + + M+ LKKS+ K SED + +E I +I D T+ +D + K Sbjct: 202 NKAKENLRKVCTNAMNKLKKSK--DKTSEDTIRLMEKQISQIADDTVAELDQHLAARPK 258 >gi|289811668|ref|ZP_06542297.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 96 Score = 84.7 bits (208), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 41/92 (44%), Positives = 60/92 (65%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM + K + +RTGR SPS+LD + VE YG+ PL Q+A+VTV + R L ++V+D Sbjct: 4 RMEKCVEAFKTQISKVRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFD 63 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVP 104 + M +VE+ I S+LGLNP G +R+P+P Sbjct: 64 RSMGPAVEKAIMASDLGLNPSSAGTDIRVPLP 95 >gi|148670216|gb|EDL02163.1| mCG10533, isoform CRA_c [Mus musculus] Length = 345 Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 94/179 (52%), Gaps = 3/179 (1%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +I L+ + + M + LK + R + LD + V V L+Q+ +++ P Sbjct: 82 IISLEEVDEDMKSVMEALKDNFNRTLNIRTASGSLDHITVVTADGKVALSQIGQISMKSP 141 Query: 64 RMLVVSVW-DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 ++++V++ E A+ + I S + LNP VEG ++R+P+P+ T E R LVK+A Sbjct: 142 QVILVNMAIFPECTAAAIKAIRGSRMNLNPEVEGTLIRVPIPKLTREHREMLVKLAKQNT 201 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 K+K ++R + + M+ LKKS+ K SED + +E I +I D T+ +D + K Sbjct: 202 NKAKENLRKVCTNAMNKLKKSK--DKTSEDTIRLMEKQISQIADDTVAELDQHLAARPK 258 >gi|66350822|emb|CAI95712.1| novel protein similar to mitochondrial ribosome recycling factor isoform 1 (LOC286423) [Homo sapiens] Length = 262 Score = 84.3 bits (207), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 5/183 (2%) Query: 4 VIDLQNIKDRMGDTISFLKKDM-MTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLE 62 +I+L+ + + M I K + TL G SP LD + V + LNQ+ ++V Sbjct: 82 IINLEEVNEEMKSVIEARKDNFNKTLNIG-TSPGSLDKIAVVTADGKLALNQIRQISVKL 140 Query: 63 PRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 P++++V++ E + + I ES + LNP VEG ++R+P+P+ E R LVK+A Sbjct: 141 PQLILVNMASFPEFTVAAIKAIRESGMNLNPEVEGTLIRVPIPQVIREHREMLVKLAKQN 200 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 K+ S+R + + M+ LKKS+ + SE + E I ++ D T+ + K K Sbjct: 201 TNKATYSLRKVCTNAMNKLKKSKDT--VSEGTIRLTEKQISQMADDTVAELYRHLAVKTK 258 Query: 182 EIM 184 E++ Sbjct: 259 ELL 261 >gi|297832754|ref|XP_002884259.1| hypothetical protein ARALYDRAFT_317013 [Arabidopsis lyrata subsp. lyrata] gi|297330099|gb|EFH60518.1| hypothetical protein ARALYDRAFT_317013 [Arabidopsis lyrata subsp. lyrata] Length = 238 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 56/149 (37%), Positives = 85/149 (57%), Gaps = 4/149 (2%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M I L +D+ LRTGR +P MLD + VE G +PLN +A V+VL+P+ L V+ +D Sbjct: 91 QMEAAIDALSRDLTKLRTGRAAPGMLDHIVVETGGVKMPLNHLALVSVLDPKTLSVNPYD 150 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + V +E+ I S LGLNP ++GQ L +P + AL + A + K V+ + Sbjct: 151 PDTVKELEKAIVASPLGLNPKLDGQRLVASIPADIFFGQ-ALDTIKKAGSSLPKDEVKRL 209 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDI 161 ++ +D L K K K++EDM S E +I Sbjct: 210 EKE-VDELTK--KFVKSAEDMCKSKEKEI 235 >gi|219129866|ref|XP_002185100.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217403595|gb|EEC43547.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 314 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 95/183 (51%), Gaps = 6/183 (3%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 D +K RM + + T+R + + D ++V+AYGSH PLN VA V + + Sbjct: 132 DPAQVKIRMTKVVDSFVTKLKTIRGSEPTADIFDDIQVDAYGSHAPLNSVAQVVISSSTL 191 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIV-EGQVLRIPVPETTEERRLALVKVAHAYAEK 124 + +D E+ +V I + L LNP V EG V+RIP+P + E R K + EK Sbjct: 192 AQATCYDPELAKNVGVAIRD-KLELNPSVEEGGVVRIPLPRVSLEVRQQTAKALTKHTEK 250 Query: 125 SKISVRNIRRDGMDHLKKSRKSGK---ASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 + VR IRR+ + +K+ ++GK S+D ++ +++ +T+ I ++ ++K K Sbjct: 251 YRQRVRTIRRNVLKVVKQG-EAGKLEGISKDDAFRVQKEVEDVTEKIIVKLNEAADQKHK 309 Query: 182 EIM 184 IM Sbjct: 310 AIM 312 >gi|119632274|gb|EAX11869.1| hCG1980694, isoform CRA_b [Homo sapiens] Length = 245 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 89/167 (53%), Gaps = 5/167 (2%) Query: 4 VIDLQNIKDRMGDTISFLKKDM-MTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLE 62 +I+L+ + + M I K + TL G SP LD + V + LNQ+ ++V Sbjct: 82 IINLEEVNEEMKSVIEARKDNFNKTLNIG-TSPGSLDKIAVVTADGKLALNQIRQISVKL 140 Query: 63 PRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 P++++V++ E + + I ES + LNP VEG ++R+P+P+ E R LVK+A Sbjct: 141 PQLILVNMASFPEFTVAAIKAIRESGMNLNPEVEGTLIRVPIPQVIREHREMLVKLAKQN 200 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDST 168 K+K S+R + + M+ LKKS+ + SE + E I ++ D T Sbjct: 201 TNKAKYSLRKVCTNAMNKLKKSKDT--VSEGTIRLTEKQISQMADDT 245 >gi|219125246|ref|XP_002182896.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217405690|gb|EEC45632.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 314 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 6/183 (3%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 D +K RM + + T+R + + D ++V+AYGSH PLN VA V + + Sbjct: 132 DPAQVKIRMTKVVDSFVTKLKTIRGSEPTADIFDDIQVDAYGSHAPLNSVAQVVISSSTL 191 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIV-EGQVLRIPVPETTEERRLALVKVAHAYAEK 124 + +D E+ +V I + L LNP V EG V+RIP+P + E R K + EK Sbjct: 192 AQATCYDPELAKNVGVAIRD-KLELNPSVEEGGVVRIPLPRVSLEVRQQTAKALTKHTEK 250 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKA---SEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 + VR IRR+ + +K+ ++GK S+D + +I+ +T+ + ++ E+K K Sbjct: 251 YRQRVRTIRRNVLKVVKQG-EAGKLEGISKDDAFRAQKEIEDVTEKIMVKLNEAAEQKHK 309 Query: 182 EIM 184 IM Sbjct: 310 AIM 312 >gi|299783102|gb|ADJ41100.1| Ribosome recycling factor [Lactobacillus fermentum CECT 5716] Length = 97 Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 40/96 (41%), Positives = 63/96 (65%) Query: 90 LNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKA 149 + P +G+ +R+ VP+ TE+RR LVK A EK+K++VRN+RR+ MD LKK K G Sbjct: 1 MTPQNDGETIRLVVPQLTEDRRKELVKDVKAEMEKAKVAVRNVRREAMDDLKKGNKDGDF 60 Query: 150 SEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++D LE +Q+ TD+ IKN++ +K+KE++ Sbjct: 61 NDDEFHDLEKQVQEETDAGIKNLEQIAADKEKELLE 96 >gi|304373376|ref|YP_003856585.1| Ribosome recycling factor [Mycoplasma hyorhinis HUB-1] gi|304309567|gb|ADM22047.1| Ribosome recycling factor [Mycoplasma hyorhinis HUB-1] Length = 186 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 88/166 (53%), Gaps = 4/166 (2%) Query: 21 LKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVE 80 L++++ + GR +P ++ +KVE Y S P+ ++A ++V P+ L++ +D+ + + Sbjct: 25 LERNLSKINIGRANPQLVSFLKVEYYDSLTPIGEIAAISVPSPQQLLIKPYDQNVTKKIA 84 Query: 81 RGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHL 140 I L + EG +R+ +PE T ++R LVK + E++K+ +R +R++ + Sbjct: 85 STIVAHKLDVQIQNEGHQVRLILPELTTQKRQELVKSIKKFDEEAKVEIRQVRQE----V 140 Query: 141 KKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 K K + SED + ++QK D I+ +D EK +M F Sbjct: 141 NKLVKKEEYSEDEERRILTELQKQIDKKIQEVDKVLSEKSANLMSF 186 >gi|293363510|ref|ZP_06610266.1| ribosome recycling factor [Mycoplasma alligatoris A21JP2] gi|292552859|gb|EFF41613.1| ribosome recycling factor [Mycoplasma alligatoris A21JP2] Length = 183 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 90/167 (53%), Gaps = 3/167 (1%) Query: 18 ISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVA 77 I+ K ++ + TGR +P ++ V+V Y + PL +++ ++V EP+ L++ +D Sbjct: 18 INHYKFELSKMSTGRANPQVIKGVRVNYYETLTPLEELSTISVPEPQQLLIKPYDSSSTK 77 Query: 78 SVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGM 137 + + + +NLG+ P+ EG +R+ P T +RR LVK E +KI +RN R++ Sbjct: 78 EIVKALTAANLGILPVDEGHQVRMTFPTLTTDRRKELVKSLSKLTEGAKIGIRNARQEVN 137 Query: 138 DHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +K + SED+ + IQK D ++ ++ +EK+ ++M Sbjct: 138 KAIKADE---ELSEDIEKRYLDAIQKEVDKYMELVNEITKEKESDLM 181 >gi|256370721|ref|YP_003108546.1| putative ribosome recycling factor [Candidatus Sulcia muelleri SMDSEM] gi|256009513|gb|ACU52873.1| putative ribosome recycling factor [Candidatus Sulcia muelleri SMDSEM] Length = 182 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 44/175 (25%), Positives = 98/175 (56%), Gaps = 3/175 (1%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 +K + + I K+ + +R G+++ S+LD V ++ YG V + ++N+++L+ R L+++ Sbjct: 9 LKSEIKNKILGFKQKLFKIRIGKINESILDDVTIDLYGKKVQIKTISNISILDARTLLIT 68 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 W+++ + + + + ++++ P G+VL++ + + TEE R L+K + E KI++ Sbjct: 69 PWEEKNINIIYKALLKNSILYTPYKTGKVLKLKMAQLTEETRKELIKKINFILEIFKINL 128 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 R +R+ +KK K +D + + +IQ + + I ++ KKKEI+ Sbjct: 129 RKLRKKT---IKKLNKINSLEKDCLKKNKIEIQNLINDCINSMKIISNRKKKEIL 180 >gi|321309651|ref|YP_004191980.1| ribosome recycling factor [Mycoplasma haemofelis str. Langford 1] gi|319801495|emb|CBY92141.1| ribosome recycling factor [Mycoplasma haemofelis str. Langford 1] Length = 177 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 92/175 (52%), Gaps = 12/175 (6%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 D + L +++ L T R+ P ++ + V AY + + LN++AN+ V R L + +D Sbjct: 9 FKDILDRLNQNLKKLYTSRIHPDLVSGIPVSAYDTEMKLNELANINVPSARTLEIKPYDI 68 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 ++A +E+ I ++ +PIV+ +RI + TEE R VK A EK+K+S+R R Sbjct: 69 SLLAEIEKAIKKNKPEFSPIVQSDHIRISLLPPTEETRKRSVKEAKELLEKAKVSLRVAR 128 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKN----IDSFFEEKKKEIM 184 +D +KK ED+ N++ DS +K+ +D+ F K+KE+M Sbjct: 129 KDFQTKIKK----DGHPEDLEKKYMNEL----DSKVKDMNAQLDNLFALKEKELM 175 >gi|193216475|ref|YP_001999717.1| ribosome recycling factor [Mycoplasma arthritidis 158L3-1] gi|193001798|gb|ACF07013.1| ribosome recycling factor [Mycoplasma arthritidis 158L3-1] Length = 183 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 90/154 (58%), Gaps = 3/154 (1%) Query: 31 GRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGL 90 GR +P++++ +K+ Y S + L+++A+++V P L+V +D + ++E+ I + L + Sbjct: 31 GRANPNLINKIKINYYDSILSLDEIASISVASPLQLLVKPYDMSVTKTIEKAIMDYKLNV 90 Query: 91 NPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKAS 150 EG +RI P+ T E+R +VK + E+++++VR R++ KK + + + S Sbjct: 91 TIANEGHQIRITYPQMTTEKRGEMVKQLNLITEQARVTVRQARQEIN---KKIKANKELS 147 Query: 151 EDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ED+ + IQ+ D +IK I +EK+K+++ Sbjct: 148 EDLQKHYLDAIQEEIDKSIKKIQEIADEKEKDLL 181 >gi|16265934|gb|AAL16673.1|AF358685_1 ribosome releasing factor [Helicobacter hepaticus] Length = 96 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 33/95 (34%), Positives = 63/95 (66%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M +I L++D TLR+G+VS ++LD V+V+ YG+ PLNQV +V + ++++ W+K Sbjct: 2 MDKSIESLRRDFSTLRSGKVSVNILDNVRVDYYGTPTPLNQVGSVIAQDATTIIITPWEK 61 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTE 108 ++ +E+ I E+N+G+NP + + +++ P T+ Sbjct: 62 PLIKDIEKSIQEANIGVNPNSDSECVKLFFPPMTQ 96 >gi|330723724|gb|AEC46094.1| Ribosome recycling factor [Mycoplasma hyorhinis MCLD] Length = 186 Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 88/166 (53%), Gaps = 4/166 (2%) Query: 21 LKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVE 80 L++++ + GR +P ++ +KVE Y S P+ ++A ++V P+ L++ +D+ + + Sbjct: 25 LERNLSKINIGRANPQLVSYLKVEYYDSLTPIGEIAAISVPSPQQLLIKPYDQNVTKKIA 84 Query: 81 RGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHL 140 I L + EG +R+ +PE T ++R LVK + E++K+ +R +R++ + Sbjct: 85 STIVAHKLDVQIQNEGHQVRLILPELTTQKRQELVKSIKKFDEEAKVEIRQVRQE----V 140 Query: 141 KKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 K K + SED + ++QK D I+ +D EK +M F Sbjct: 141 NKLVKKEEYSEDEERRILIELQKQIDKKIQEVDKVLSEKSANLMSF 186 >gi|91077948|ref|XP_966879.1| PREDICTED: similar to mitochondrial ribosome recycling factor [Tribolium castaneum] gi|270002287|gb|EEZ98734.1| hypothetical protein TcasGA2_TC001287 [Tribolium castaneum] Length = 262 Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 99/186 (53%), Gaps = 6/186 (3%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 ++++++++++K +M + LK+D + + R + ++ + VE G L ++A + Sbjct: 78 LSEIVNVESLKTQMQKAVDLLKEDYVKHLSVRTTTGSVESIPVELDGKTHSLQELAQIIR 137 Query: 61 LEPRMLVV--SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 P+ LV+ SV+ + + A++ + I +S + LNP +G L IP+P+ T E R L K A Sbjct: 138 KNPKTLVINMSVFPQAIPAAL-KAIEKSGMNLNPQQDGTTLFIPIPKVTTEHRENLAKSA 196 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 K + +R+++ + LK K K SEDM + E I I D+ I + E Sbjct: 197 KTMFIKCRDGIRDVQNKQVKSLK---KKDKVSEDMARNSEQQIVAIADAYIAEAEKILES 253 Query: 179 KKKEIM 184 K+KE++ Sbjct: 254 KQKELV 259 >gi|145510568|ref|XP_001441217.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124408456|emb|CAK73820.1| unnamed protein product [Paramecium tetraurelia] Length = 233 Score = 77.8 bits (190), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 99/186 (53%), Gaps = 3/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +++ ID + + + ++ + L+ G+++P MLD V ++AYG +PL+ +A + Sbjct: 49 LSKTIDFTSYQSKFDQYAQKFQEALKKLQVGKLTPEMLDRVSIQAYGEKLPLSSLAQASQ 108 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLN-PIVEGQVLRIPVPETTEERRLALVKVAH 119 +L+++V+D+ + V + + S+L L + Q++ T+E R+ V Sbjct: 109 KSQGVLILNVFDESTLMDVMKALENSDLNLQVKKQDKQIVCQLAQGNTKESRIMAVNNLK 168 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 E +K ++R IR + +D LK +K SED + E IQ + + +++DS ++ K Sbjct: 169 KLMEDAKQNLRQIRHECIDDLKPYKKV--TSEDTMRQAEKQIQDLFEKQTQSLDSLYKSK 226 Query: 180 KKEIMH 185 +KE+++ Sbjct: 227 EKELLN 232 >gi|167520356|ref|XP_001744517.1| hypothetical protein [Monosiga brevicollis MX1] gi|163776848|gb|EDQ90466.1| predicted protein [Monosiga brevicollis MX1] Length = 253 Score = 77.4 bits (189), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 92/179 (51%), Gaps = 3/179 (1%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 + L ++D+ + L + T+RTG V+P++LD VKV+ + L+Q V+V Sbjct: 74 VPLDALQDKYHGQLQHLLNEYATIRTGEVTPNLLDGVKVKMGDATFALSQAGMVSVKNTD 133 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 L+V+ +D + + + ++N+ NP+ + V+RI +P+ T+E R +VK A E+ Sbjct: 134 TLIVTTFDSDTAKAAYEAVVDANIAPNPVRDDLVIRIQMPKLTKEYREQVVKRAKEMLEQ 193 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +K +R++R + LK + SED +++ + I + D +E+K I Sbjct: 194 TKNKMRHLRSHAVSQLKGTE---GLSEDDTHAMQEYLDAINTHFVAQADEMYEKKADHI 249 >gi|307069549|ref|YP_003878026.1| putative ribosome recycling factor [Candidatus Zinderia insecticola CARI] gi|306482809|gb|ADM89680.1| putative ribosome recycling factor [Candidatus Zinderia insecticola CARI] Length = 180 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 38/165 (23%), Positives = 93/165 (56%), Gaps = 4/165 (2%) Query: 21 LKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVE 80 K +++ ++ +++ ++L +K++ + LN+++N+ V++ + L + ++K ++ +++ Sbjct: 19 FKNNLIKIQGNKLNSNILYNIKIKYNNKKIYLNKISNIFVIDEKTLSIIPYEKNIINNIK 78 Query: 81 RGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHL 140 + ++ + N I + I +P+ E + ++ Y E+ KI++RN RR + + Sbjct: 79 KTLNYNKFNFNYIKKKNTFYIKIPKLNNEFKNIIINNLKKYTEEKKINIRNERRIFKNKI 138 Query: 141 KKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 K K S + + +++N + K+T I+ ID FF+ KKKEI++ Sbjct: 139 NKE----KYSLNEINNIKNKLDKLTKKYIEKIDFFFKIKKKEILN 179 >gi|198467224|ref|XP_001354314.2| GA18189 [Drosophila pseudoobscura pseudoobscura] gi|198149556|gb|EAL31367.2| GA18189 [Drosophila pseudoobscura pseudoobscura] Length = 261 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/185 (24%), Positives = 97/185 (52%), Gaps = 4/185 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 + ++I+L ++ +M ++ +K+D + + R + +D ++++ G L ++A ++ Sbjct: 77 LREIINLDSLNTQMERSVQQMKEDFIKHLSLRSTSGAIDTLRIKVDGDEHELQELAQISR 136 Query: 61 LEPRMLVVS-VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 P+ ++V+ + + + V R I +S + LNP +G L IP+P+ T+E R L K A Sbjct: 137 KNPKTIIVNMIAFPQTIPDVLRAIEKSGMNLNPQQDGTTLFIPIPKVTKEHRENLSKNAK 196 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 A K + ++RN++ DH++K +K +D + + + I D I D K Sbjct: 197 ALFVKYRDAIRNVQN---DHIRKLKKQPDVGKDDAFAAQTQVTAIGDKFIAEADKLLASK 253 Query: 180 KKEIM 184 +KE++ Sbjct: 254 QKELL 258 >gi|71894688|ref|YP_278796.1| ribosome releasing factor [Mycoplasma synoviae 53] gi|71851476|gb|AAZ44085.1| ribosome releasing factor [Mycoplasma synoviae 53] Length = 184 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 86/164 (52%), Gaps = 4/164 (2%) Query: 24 DMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGI 83 +M + TG+ +P ++ +KV Y + L+++A + V EP+ L++ +D + + I Sbjct: 24 EMSKISTGKANPQIVKKIKVMYYDNPTELDEIATIMVPEPQQLLIKPFDATSTKDIVKAI 83 Query: 84 HESNLGLNPIV-EGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKK 142 +NLG P+ EG +RI P T +RR LVK + E++K+ VRN R++ + +K Sbjct: 84 LSANLGNFPMTDEGNQIRITFPPMTSDRRKELVKSLSKFIEQAKVGVRNARQEIIKAIK- 142 Query: 143 SRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 + SEDM + I+ I+ I + +EK+ ++ F Sbjct: 143 --SDAELSEDMQKNYVEKIELEVKKKIERISTLAKEKENDLNAF 184 >gi|289809014|ref|ZP_06539643.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 91 Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 36/91 (39%), Positives = 57/91 (62%) Query: 96 GQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVA 155 G +R+P+P TEERR L K+ AE+++++VRN+RRD D +K K SED Sbjct: 1 GTDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKAISEDDDR 60 Query: 156 SLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 + ++QK+TD+ IK +D+ +K+ E+M F Sbjct: 61 RSQEEVQKMTDAAIKKVDAALADKEAELMQF 91 >gi|157121137|ref|XP_001659843.1| mitochondrial ribosome recycling factor [Aedes aegypti] gi|108874707|gb|EAT38932.1| mitochondrial ribosome recycling factor [Aedes aegypti] Length = 258 Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 96/185 (51%), Gaps = 4/185 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 + +VID+++++ M T+ +K+D + + R + ++ +KV G L ++A V Sbjct: 74 LAEVIDIESLRTHMEKTLETMKEDYIKNLSLRSATGAIETLKVSYEGKDYQLQELAQVVR 133 Query: 61 LEPRMLVVS-VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 P+ +VV+ V + + +V + I +S + LNP +G L IPVP+ T E R L K A Sbjct: 134 KNPKTVVVNLVSFPQTIPAVLQAIQKSGMNLNPQQDGTTLFIPVPKVTREHREGLAKNAK 193 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 K + ++++I+ +K+ +K SED+ ++ + I + IK + E K Sbjct: 194 TLFVKCRDAIKDIQNKT---IKQVKKQANISEDLSFQVQTQVTAIANGYIKEAEKMLETK 250 Query: 180 KKEIM 184 + E++ Sbjct: 251 QAELL 255 >gi|118384524|ref|XP_001025410.1| ribosome recycling factor family protein [Tetrahymena thermophila] gi|89307177|gb|EAS05165.1| ribosome recycling factor family protein [Tetrahymena thermophila SB210] Length = 268 Score = 73.9 bits (180), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 88/164 (53%), Gaps = 3/164 (1%) Query: 22 KKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVER 81 K ++ L+TGR++P M + + V AYG PL ++ + + ++++D +V ++ + Sbjct: 105 KAELAKLKTGRLTPDMFEKLSVVAYGEKTPLTELCQIVSKAVTTVQLNIYDDALVGAIHK 164 Query: 82 GIHESNLGLNPIVEGQVLRIP-VPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHL 140 + S+L L EG+++ V T+E + A +K A + +K+K +R R+ G D + Sbjct: 165 ILENSDLNLQLKREGKIITCTMVGGNTKEIKDATIKAAKSVVDKAKNLLRKHRQTGQDMI 224 Query: 141 KKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 K +K SED + E ++ I + + +D+ + K+KEI+ Sbjct: 225 KGYKKF--ESEDFIKEAEKEVDNIHNKFVAELDNLLKIKEKEII 266 >gi|312978248|ref|ZP_07789992.1| ribosome recycling factor [Lactobacillus crispatus CTV-05] gi|310894966|gb|EFQ44036.1| ribosome recycling factor [Lactobacillus crispatus CTV-05] Length = 82 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 37/79 (46%), Positives = 51/79 (64%) Query: 107 TEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITD 166 T ERR + K +AE++KI+VRN+RRD M+ LKK K+G +ED +LE +QK+TD Sbjct: 3 TGERREEIAKEVGKFAEEAKIAVRNVRRDAMNTLKKDEKNGDITEDEQRNLEKQVQKVTD 62 Query: 167 STIKNIDSFFEEKKKEIMH 185 K ID +EK+KEI Sbjct: 63 DAAKQIDQLADEKRKEITQ 81 >gi|194751343|ref|XP_001957986.1| GF10686 [Drosophila ananassae] gi|190625268|gb|EDV40792.1| GF10686 [Drosophila ananassae] Length = 255 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 44/185 (23%), Positives = 96/185 (51%), Gaps = 4/185 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 + ++++ + +M ++S +K D + + R + +D ++V+ G L ++A ++ Sbjct: 72 LREILNFDGLNSQMQKSVSQMKDDFVKHLSLRSTSGAIDTLRVKVDGQEHELQELAQISR 131 Query: 61 LEPRMLVVS-VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 P+ ++V+ + + + V + I +S + LNP +G L IP+P+ T+E R L K A Sbjct: 132 KNPKTIIVNMIAFPQTIPDVLKAIEKSGMNLNPQQDGTTLFIPIPKVTKEHRENLSKNAK 191 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 A K + ++R ++ M+H++K +K + +D + + + I D I D K Sbjct: 192 ALFVKYRDAIRGVQ---MEHIRKLKKQPELGKDDAFAAQAQVTAIADRYIGEADKLLATK 248 Query: 180 KKEIM 184 +KE++ Sbjct: 249 QKELL 253 >gi|209736400|gb|ACI69069.1| Ribosome recycling factor, mitochondrial precursor [Salmo salar] Length = 231 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 87/181 (48%), Gaps = 35/181 (19%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +I L+ +K+ M ++ LK D + R SP LD H+ Sbjct: 85 IISLEEVKEDMAAVLTTLKDDFSRNLSIRTSPGALD---------HI------------- 122 Query: 64 RMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAE 123 +V + R + ES++ LNP V+G ++R+ +P+ T E R L K+A ++ Sbjct: 123 -----------VVGAATRSLRESSMKLNPEVDGTIIRVAIPKVTREHRENLAKLAKQFSN 171 Query: 124 KSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 K+K S+R +R + + +KK++ + SED + +E I ++ DS ++D K KE+ Sbjct: 172 KAKESLRKVRSNAITQVKKAKDT--VSEDTIRLVEKQIGQMADSFAADVDKQLTTKTKEL 229 Query: 184 M 184 + Sbjct: 230 L 230 >gi|307128651|ref|YP_003880681.1| ribosome recycling factor [Candidatus Sulcia muelleri CARI] gi|306483113|gb|ADM89983.1| ribosome recycling factor [Candidatus Sulcia muelleri CARI] Length = 157 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 30/111 (27%), Positives = 68/111 (61%) Query: 25 MMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIH 84 ++ +R R++ + LD + +E YG+ VP+N+++ + + +++ W+K+ + + + + Sbjct: 26 ILKIRIDRINENFLDSINIEYYGNKVPINKISTILKVNSITVLIKPWEKKYLNIIYKTLL 85 Query: 85 ESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRD 135 + + GL I +G+++++ + + TEE R L+K + EK KI +RNIR + Sbjct: 86 KEDRGLIIINDGKMIKLKISKLTEETRKKLIKKVKFFLEKKKIEIRNIRNE 136 >gi|323507599|emb|CBQ67470.1| conserved hypothetical protein [Sporisorium reilianum] Length = 331 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 60/196 (30%), Positives = 96/196 (48%), Gaps = 18/196 (9%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTL--RTGRVSPSMLDLVKVE-AYGSHV---PLNQV 55 ++ DL I M + + L GR PS+LD +KVE A G+ PL + Sbjct: 139 DEAFDLDAIASHMSRAVERCRSTTSALVGSFGRADPSLLDNIKVEFASGTSKTLHPLREF 198 Query: 56 ANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVE---GQVLRIPVPETTEERRL 112 A V V + L+V+ +D +M+ +ER I+ S L L P + VLR+ VP+ T E R Sbjct: 199 ATVGVRD-SALIVTAFDADMLKHIERAIYTSQLNLTPQAQPGDDSVLRVAVPQPTTESRQ 257 Query: 113 ALVKVAHAYAEKSKISVRNIRRDGMDHLKK--SRK-SGKASEDMVA-SLENDIQKITDST 168 A+VK E +++S+R+ R +K RK GK+ D + +E + +K T Sbjct: 258 AMVKDLTRICENARVSIRDARHKAQKQIKSDVDRKVVGKSEGDKESKKVEAETKKWT--- 314 Query: 169 IKNIDSFFEEKKKEIM 184 +D FE+ K+ ++ Sbjct: 315 -AQVDQLFEKMKQSLL 329 >gi|71003105|ref|XP_756233.1| hypothetical protein UM00086.1 [Ustilago maydis 521] gi|46096238|gb|EAK81471.1| hypothetical protein UM00086.1 [Ustilago maydis 521] Length = 183 Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 46/120 (38%), Positives = 64/120 (53%), Gaps = 10/120 (8%) Query: 31 GRVSPSMLDLVKVE-AYGSHV----PLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHE 85 GR PS+LD +KVE GS PL A V V + L+V+ +D +MV +ER I+ Sbjct: 20 GRADPSLLDSIKVEYPAGSSSKALHPLRDFATVGVRDG-ALIVTAFDADMVKHIERAIYA 78 Query: 86 SNLGLNPIVEG----QVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLK 141 SNL L P + VLR+ VP+ T E R ALVK E +++S+R+ R +K Sbjct: 79 SNLNLTPQTQAGGEENVLRVAVPQPTTESRQALVKDLTKICENARVSIRDARHKAQKQIK 138 >gi|217072808|gb|ACJ84764.1| unknown [Medicago truncatula] Length = 206 Score = 70.9 bits (172), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 4/122 (3%) Query: 9 NIK----DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 NIK +M ++ L ++ LRTGR S MLD + VE G +PL+++A V+VL+P+ Sbjct: 84 NIKASASSQMEAAMTALSVELSKLRTGRASAGMLDHIIVETGGVKMPLSRIALVSVLDPK 143 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 L V+ +D E + +E I S LGLNP +G+ L +P T+E A+ K+ E Sbjct: 144 TLSVNPYDPETLKQLENAIVSSPLGLNPRTDGERLIAVIPPLTKEHMQAMNKLVTKSCED 203 Query: 125 SK 126 ++ Sbjct: 204 TR 205 >gi|195429112|ref|XP_002062608.1| GK17631 [Drosophila willistoni] gi|194158693|gb|EDW73594.1| GK17631 [Drosophila willistoni] Length = 257 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 45/185 (24%), Positives = 95/185 (51%), Gaps = 3/185 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 + ++I+L + +M ++ +K D + + R + +D ++++ G+ L ++A ++ Sbjct: 72 LREIINLDQLNTQMEKSVQQMKDDFIKHLSLRSTSGAIDSLRIKVDGNVHELQELAQISR 131 Query: 61 LEPRMLVVS-VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 P+ ++++ + + + V R I +S + LNP +G L IP+P+ T+E R L K A Sbjct: 132 KNPKTIIINMIAFPQTIPDVLRAIEKSGMNLNPQQDGTTLFIPIPKVTKEHREHLSKNAK 191 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 A K + ++R ++ D + LKK ++ +D +N + I D I D K Sbjct: 192 ALYIKYRDAIRQVQNDHIRKLKK--QADDIGKDDAFKAQNQVTAIADKYIAEADKLLATK 249 Query: 180 KKEIM 184 +KE++ Sbjct: 250 QKELL 254 >gi|195377904|ref|XP_002047727.1| GJ11766 [Drosophila virilis] gi|194154885|gb|EDW70069.1| GJ11766 [Drosophila virilis] Length = 260 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 97/185 (52%), Gaps = 4/185 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 + ++I+L ++ +M ++ +K D + + R + +D ++++ G+ L ++A ++ Sbjct: 76 LRELINLDSLNAQMEKSVLQMKDDFIKNLSLRSTSGAIDSLRIKVDGAEHELQELAQISR 135 Query: 61 LEPRMLVVS-VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 P+ +VV+ + + + V R I +S + LNP +G L IP+P+ T+E R L K A Sbjct: 136 KNPKTIVVNMIAFPQTIPDVLRAIEKSGMNLNPQQDGTTLFIPIPKVTKEHREHLSKNAK 195 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 A K + ++R+I+ + LKK GK +D A+ + + I D I D K Sbjct: 196 AMFIKYRDAIRDIQNTQIRKLKKQTDIGK--DDAFAA-QTQVTAIADKYIAEADKLLASK 252 Query: 180 KKEIM 184 +KE++ Sbjct: 253 QKELL 257 >gi|302848442|ref|XP_002955753.1| hypothetical protein VOLCADRAFT_106930 [Volvox carteri f. nagariensis] gi|300258946|gb|EFJ43178.1| hypothetical protein VOLCADRAFT_106930 [Volvox carteri f. nagariensis] Length = 266 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 2/181 (1%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKV--EAYGSHVPLNQVANVTVLE 62 DL +M + +K++ +RTGR SP +L+ V V ++G HVP+ + V V Sbjct: 82 FDLAPFVSQMRSALEHYQKELAGIRTGRASPGLLEGVMVGESSHGKHVPVRALGTVVVRN 141 Query: 63 PRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 P +LVV V++ + + I S L L VEG + + VP T + +V++A A Sbjct: 142 PHLLVVEVYNPQDAQPLAEAIQSSPLKLQARVEGLEVLVEVPRLTMDMVERMVRLAGQEA 201 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 E ++ VR R +D K+ G S++ E +Q TD I +D+ K+ E Sbjct: 202 EAARAEVRRARHKALDLAKRVAAGGGVSKEETKRREVQVQVATDKHIAEVDALLRAKETE 261 Query: 183 I 183 + Sbjct: 262 L 262 >gi|58263076|ref|XP_568948.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21] gi|134107878|ref|XP_777321.1| hypothetical protein CNBB1230 [Cryptococcus neoformans var. neoformans B-3501A] gi|50260011|gb|EAL22674.1| hypothetical protein CNBB1230 [Cryptococcus neoformans var. neoformans B-3501A] gi|57223598|gb|AAW41641.1| expressed protein [Cryptococcus neoformans var. neoformans JEC21] Length = 252 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 51/158 (32%), Positives = 81/158 (51%), Gaps = 17/158 (10%) Query: 31 GRVSPSMLDLVKV---EAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESN 87 GRVSP++LD V+V + G+ + LN +A+VT + L V VWD + VE IH +N Sbjct: 104 GRVSPALLDSVRVSLPDTPGT-LHLNALASVTT-KGNALFVEVWDTASLKQVESAIHAAN 161 Query: 88 L-GLNPI-VEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRK 145 L G++P + G L+IP+ T E+R +++ E +K +R R DG L + Sbjct: 162 LPGISPQRMAGTTLKIPIARPTVEQRAEILRQLAETVEAAKTQIRVARTDGFKALGGRKA 221 Query: 146 SGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +G +++QK+ D K++D KKE Sbjct: 222 NG----------TDEVQKVVDEMCKDLDGQLALAKKEF 249 >gi|299143516|ref|ZP_07036596.1| ribosome recycling factor [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518001|gb|EFI41740.1| ribosome recycling factor [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 78 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 51/78 (65%), Gaps = 3/78 (3%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 + K+R+ +I+ K ++R GR +PS+LD + V+ YG PLNQVA ++ EPR+L + Sbjct: 4 DCKERICKSITDRSK---SIRAGRANPSLLDKITVDYYGQATPLNQVAGISAPEPRLLAI 60 Query: 69 SVWDKEMVASVERGIHES 86 + WD ++ ++E+ I +S Sbjct: 61 TPWDASLIPAIEKAILKS 78 >gi|195020953|ref|XP_001985300.1| GH14583 [Drosophila grimshawi] gi|193898782|gb|EDV97648.1| GH14583 [Drosophila grimshawi] Length = 262 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 47/185 (25%), Positives = 98/185 (52%), Gaps = 4/185 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 + ++I+L + +M ++ ++ D + + R + +D ++++ G+ L Q+A ++ Sbjct: 78 LRELINLDGLNAQMEKSVLQMRDDFIKNLSLRSTSGAIDTLRIKVDGAEHELQQLAQISR 137 Query: 61 LEPRMLVVS-VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 P+ +V++ + + + V R I +S + LNP +G L IP+P+ T+E R L K A Sbjct: 138 KNPKTIVINMIAFPQTIPDVLRAIEKSGMNLNPQQDGTTLFIPIPKVTKEHREHLSKNAK 197 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 A K + ++R+I+ + LKK ++ A +D+ A+ + + I D I D K Sbjct: 198 ALFIKHRDAIRDIQNAEIRKLKK--QTDIAKDDVFAA-QTQLTAIADKYIGEADKLLASK 254 Query: 180 KKEIM 184 +KE++ Sbjct: 255 QKELL 259 >gi|195129487|ref|XP_002009187.1| GI13908 [Drosophila mojavensis] gi|193920796|gb|EDW19663.1| GI13908 [Drosophila mojavensis] Length = 266 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 45/184 (24%), Positives = 97/184 (52%), Gaps = 4/184 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 + ++I+L ++ +M ++ +K+D + + R + +D ++++ G+ L ++A ++ Sbjct: 82 LRELINLDSLNAQMEKSVLQMKEDFIKNLSLRSTSGAIDTLRIKVDGAEHELQELAQISR 141 Query: 61 LEPRMLVVS-VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 P+ ++V+ + + + V R I +S + LNP +G L IP+P+ T+E R L K A Sbjct: 142 KNPKTIIVNMIAFPQTIPDVLRAIEKSGMNLNPQQDGTTLFIPIPKVTKEHRELLSKNAK 201 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 A K + ++R+I+ ++K +K ++D V + + + I D I D K Sbjct: 202 ALFIKYRDAIRDIQN---AQIRKLKKQTDVAKDDVFAAQTQVTAIADKYIAEADKLLVSK 258 Query: 180 KKEI 183 +KE+ Sbjct: 259 QKEL 262 >gi|24661488|ref|NP_648302.2| CG4447 [Drosophila melanogaster] gi|7294968|gb|AAF50297.1| CG4447 [Drosophila melanogaster] gi|201065901|gb|ACH92360.1| FI06490p [Drosophila melanogaster] Length = 254 Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 41/185 (22%), Positives = 95/185 (51%), Gaps = 4/185 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 + ++++ + +M ++ +K+D + + R + +D ++++ G L ++A ++ Sbjct: 71 LREILNFDGLNSQMQKSVMQMKEDFVKHLSLRSTSGAIDTLRIKVDGQEHELQELAQISR 130 Query: 61 LEPRMLVVS-VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 P+ ++V+ + + + V + I +S + LNP +G L IP+P+ T+E R L K A Sbjct: 131 KNPKTIIVNMIGFPQTIPDVLKAIEKSGMNLNPQQDGTTLFIPIPKVTKEHRENLSKNAK 190 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 A K + ++R ++ +H++K +K + +D + + + I D I D K Sbjct: 191 ALFVKYRDAIRGVQN---EHIRKLKKQPELGKDDAFAAQAQVTAIADRFISEADKLLASK 247 Query: 180 KKEIM 184 +KE++ Sbjct: 248 QKELL 252 >gi|194867771|ref|XP_001972146.1| GG15364 [Drosophila erecta] gi|190653929|gb|EDV51172.1| GG15364 [Drosophila erecta] Length = 254 Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 44/185 (23%), Positives = 96/185 (51%), Gaps = 4/185 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 + ++++ + +M ++ +K+D + + R + +D ++++ G L ++A ++ Sbjct: 71 LREILNFDGLNSQMQKSVMQMKEDFVKHLSLRSTSGAIDTLRIKVDGQEHELQELAQISR 130 Query: 61 LEPRMLVVS-VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 P+ ++V+ + + + V + I +S + LNP +G L IP+P+ T+E R L K A Sbjct: 131 KNPKTIIVNMIGFPQTIPDVLKAIEKSGMNLNPQQDGTTLFIPIPKVTKEHRENLSKNAK 190 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 A K + ++R ++ + + LKK + GK +D A+ + + I D I D K Sbjct: 191 ALFVKYRDAIRGVQNEQIRKLKKQPELGK--DDAFAA-QAQVTAIADRFISEADKLLASK 247 Query: 180 KKEIM 184 +KE++ Sbjct: 248 QKELL 252 >gi|195490897|ref|XP_002093333.1| GE20827 [Drosophila yakuba] gi|194179434|gb|EDW93045.1| GE20827 [Drosophila yakuba] Length = 254 Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 44/185 (23%), Positives = 96/185 (51%), Gaps = 4/185 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 + ++++ + +M ++ +K+D + + R + +D ++++ G L ++A ++ Sbjct: 71 LREILNFDGLNSQMQKSVMQMKEDFVKHLSLRSTSGAIDTLRIKVDGQEHELQELAQISR 130 Query: 61 LEPRMLVVS-VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 P+ ++V+ + + + V + I +S + LNP +G L IP+P+ T+E R L K A Sbjct: 131 KNPKTIIVNMIGFPQTIPDVLKAIEKSGMNLNPQQDGTTLFIPIPKVTKEHRENLSKNAK 190 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 A K + ++R ++ + + LKK + GK +D A+ + + I D I D K Sbjct: 191 ALFVKYRDAIRGVQNEQIRKLKKQPELGK--DDAFAA-QAQVTAIADRFISEADKLLASK 247 Query: 180 KKEIM 184 +KE++ Sbjct: 248 QKELL 252 >gi|312876744|ref|ZP_07736723.1| ribosome recycling factor [Caldicellulosiruptor lactoaceticus 6A] gi|311796475|gb|EFR12825.1| ribosome recycling factor [Caldicellulosiruptor lactoaceticus 6A] Length = 84 Score = 67.8 bits (164), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 49/78 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q +++M I LK++ T+R GR +P +LD V V+ YG P+ QVA++TV E RM+ Sbjct: 5 IQVAEEKMKKAIETLKEEFATVRAGRANPHILDKVMVDYYGVPTPIPQVASITVPEARMI 64 Query: 67 VVSVWDKEMVASVERGIH 84 V+ W+ M+ +E+ I Sbjct: 65 VIQPWEARMLKEIEKAIQ 82 >gi|54020577|ref|YP_116060.1| ribosome recycling factor [Mycoplasma hyopneumoniae 232] gi|53987750|gb|AAV27951.1| ribosome releasing factor [Mycoplasma hyopneumoniae 232] gi|144227682|gb|AAZ44621.2| ribosome recycling factor [Mycoplasma hyopneumoniae J] gi|144575504|gb|AAZ53900.2| ribosome recycling factor [Mycoplasma hyopneumoniae 7448] gi|312601486|gb|ADQ90741.1| Ribosome recycling factor [Mycoplasma hyopneumoniae 168] Length = 186 Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 83/172 (48%), Gaps = 4/172 (2%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 ++ D S+L+K + G +P ++ +KV Y P+N++A+++ P L+V + Sbjct: 16 EKAQDVFSYLEKSFQKVTIGAPNPQLISYIKVNFYDVLTPINEIASISAPLPLQLLVKPY 75 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 + + V + I + + E +R+ PE T ++R + E+ K+ +R Sbjct: 76 ETKYVKEIASAIVAAKIDAQVQKEANQVRLIFPEPTHQKRQEAIHKLKKIHEEGKVRMRL 135 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 IR+D + K K + SED+ +QK +S I+ ID F++K K I Sbjct: 136 IRQD----INKLIKKEEFSEDLEKDYLGQVQKNINSEIEKIDQLFDKKVKAI 183 >gi|47458890|ref|YP_015752.1| ribosome recycling factor [Mycoplasma mobile 163K] gi|60390256|sp|Q6KIN5|RRF_MYCMO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|47458218|gb|AAT27541.1| ribosome recycling factor [Mycoplasma mobile 163K] Length = 183 Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 43/175 (24%), Positives = 89/175 (50%), Gaps = 3/175 (1%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 +K M + + + G+ +P ++ +K Y + + ++A ++V E + +++ Sbjct: 10 VKLEMEKAVQTYSNQIAKISAGKANPKLISGIKFIYYDEPMSIEEMAAISVPEAQQILIK 69 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 +D + ++ +++ N + + EG +R+ P T ERR LVK E +K+++ Sbjct: 70 PYDIKTTKNIIESLNKMNYDMQIVDEGAQVRLKFPALTTERRKELVKQLVKLNESAKVAI 129 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 R +R+D +KK + SED ++IQK+TD I I+ ++K+KE+M Sbjct: 130 RQVRQDENKLIKKDE---ELSEDEQKKYLDEIQKLTDKYIFKIEELNKDKEKELM 181 >gi|71893886|ref|YP_279332.1| ribosome recycling factor [Mycoplasma hyopneumoniae J] gi|72080865|ref|YP_287923.1| ribosome recycling factor [Mycoplasma hyopneumoniae 7448] Length = 174 Score = 67.4 bits (163), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 83/172 (48%), Gaps = 4/172 (2%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 ++ D S+L+K + G +P ++ +KV Y P+N++A+++ P L+V + Sbjct: 4 EKAQDVFSYLEKSFQKVTIGAPNPQLISYIKVNFYDVLTPINEIASISAPLPLQLLVKPY 63 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 + + V + I + + E +R+ PE T ++R + E+ K+ +R Sbjct: 64 ETKYVKEIASAIVAAKIDAQVQKEANQVRLIFPEPTHQKRQEAIHKLKKIHEEGKVRMRL 123 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 IR+D + K K + SED+ +QK +S I+ ID F++K K I Sbjct: 124 IRQD----INKLIKKEEFSEDLEKDYLGQVQKNINSEIEKIDQLFDKKVKAI 171 >gi|321248742|ref|XP_003191225.1| hypothetical protein CGB_A1450C [Cryptococcus gattii WM276] gi|317457692|gb|ADV19438.1| Hypothetical Protein CGB_A1450C [Cryptococcus gattii WM276] Length = 252 Score = 67.4 bits (163), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 80/158 (50%), Gaps = 17/158 (10%) Query: 31 GRVSPSMLDLVKV---EAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESN 87 GRVSP++LD V+V + G+ + LN +A+VT + L V VWD + VE IH +N Sbjct: 104 GRVSPALLDSVRVTLPDTPGT-LHLNALASVTT-KGNALFVEVWDTASLKQVESAIHSAN 161 Query: 88 L-GLNPI-VEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRK 145 L G++P + L+IP+ T E+R +++ E +K +R R DG L + Sbjct: 162 LPGISPQRMAATTLKIPIARPTVEQRTEILRQLAETVEAAKTQIRVARTDGFKALGGRKA 221 Query: 146 SGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +G +++QK+ D K++D KKE Sbjct: 222 NGT----------DEVQKVVDEMCKDLDGQLALAKKEF 249 >gi|156542086|ref|XP_001602891.1| PREDICTED: similar to GA18189-PA [Nasonia vitripennis] Length = 240 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/185 (22%), Positives = 97/185 (52%), Gaps = 5/185 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 + +++D+ ++ +M I +K D + T R + L+ + V+ + ++A + Sbjct: 56 LGELLDVDDLTSQMSQAIENMKADFIKNLTLRSTTGSLEQIPVKVDDKEYQIQELAQI-A 114 Query: 61 LEPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 +P++++++V + + + I +S L +NP EG L +P+P+ T+E R L K A Sbjct: 115 RKPKLIILNVSSFPTAIPHILKAIQKSGLNINPQQEGTTLYLPIPKVTKEHRENLSKNAK 174 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 A + + +++IR + +LKK + SED + +++ ++ ++D +K + E K Sbjct: 175 AIYIRYRDEIKDIRSKAIKNLKKRK---DVSEDSIRRVQSQVEALSDKYVKEAEIVLETK 231 Query: 180 KKEIM 184 + E++ Sbjct: 232 QNELL 236 >gi|61680523|pdb|1Y69|8 Chain 8, Rrf Domain I In Complex With The 50s Ribosomal Subunit From Deinococcus Radiodurans Length = 113 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 33/80 (41%), Positives = 52/80 (65%) Query: 107 TEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITD 166 TEERR L K+ AE+++++VRN+RRD D +K K + SED ++D+QK+TD Sbjct: 34 TEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQKLTD 93 Query: 167 STIKNIDSFFEEKKKEIMHF 186 + IK I++ +K+ E+M F Sbjct: 94 AAIKKIEAALADKEAELMQF 113 >gi|332375891|gb|AEE63086.1| unknown [Dendroctonus ponderosae] Length = 268 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 46/185 (24%), Positives = 96/185 (51%), Gaps = 4/185 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 + +VI++ +++ M + ++ D + + R + ++ V V G+ + ++A + Sbjct: 84 LAEVINVGSLRSLMEKALLQMEDDFVKHLSLRSTTGAIESVPVNLDGNEHTMQELAQIVR 143 Query: 61 LEPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 P+ +V++ + + + + + +S + LNP +G L IPVP+ T+E R L K A Sbjct: 144 KNPKTIVMNFATFPQAIPAALKALSKSGMNLNPQQDGTTLFIPVPKVTKEHREQLAKNAK 203 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 K K SVR+++ + +K+ +K + SED+ S+E I I D I N ++ +K Sbjct: 204 QLFVKCKDSVRDVQ---LKFIKQLKKQDRISEDLARSVEQQIIAIADQFIANAEATLNKK 260 Query: 180 KKEIM 184 + E++ Sbjct: 261 QAELL 265 >gi|307167406|gb|EFN60991.1| Ribosome-recycling factor, mitochondrial [Camponotus floridanus] Length = 212 Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 42/185 (22%), Positives = 99/185 (53%), Gaps = 5/185 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M +VID+ + ++ I +K D + R + ++ + V+ G L ++A ++ Sbjct: 28 MEEVIDVNKLTSQLERAIEIMKDDFAKYLSIRSTVGAIEELSVKFEGKDYTLQELAQIS- 86 Query: 61 LEPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 +P+++V+++ + + + + + ++ + LNP +G + +P+P+ T+E R +L K A Sbjct: 87 RKPKLIVLNISTFPQAIPDILKSLTKNQMNLNPQQDGTTVYVPIPKVTKEHRESLSKNAK 146 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 ++ K ++R+IR + +K K G A +D++ +EN I +++ + + E K Sbjct: 147 SFYTKCCSNIRDIRNKQIKTVK--NKEGLA-KDIIFRMENYIDILSNQYVSKAEQLLETK 203 Query: 180 KKEIM 184 +KE++ Sbjct: 204 QKELL 208 >gi|17861680|gb|AAL39317.1| GH21184p [Drosophila melanogaster] Length = 254 Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 40/185 (21%), Positives = 94/185 (50%), Gaps = 4/185 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 + ++++ + +M ++ +K+D + + + +D ++++ G L ++A ++ Sbjct: 71 LREILNFDGLNSQMQKSVMQMKEDFVKHLSLPSTSGAIDTLRIKVDGQEHELQELAQISR 130 Query: 61 LEPRMLVVS-VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 P+ ++V+ + + + V + I +S + LNP +G L IP+P+ T+E R L K A Sbjct: 131 KNPKTIIVNMIGFPQTIPDVLKAIEKSGMNLNPQQDGTTLFIPIPKVTKEHRENLSKNAK 190 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 A K + ++R ++ +H++K +K + +D + + + I D I D K Sbjct: 191 ALFVKYRDAIRGVQN---EHIRKLKKQPELGKDDAFAAQAQVTAIADRFISEADKLLASK 247 Query: 180 KKEIM 184 +KE++ Sbjct: 248 QKELL 252 >gi|322796292|gb|EFZ18864.1| hypothetical protein SINV_09513 [Solenopsis invicta] Length = 308 Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 46/185 (24%), Positives = 96/185 (51%), Gaps = 5/185 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 + QVID+ + ++ I LK + + R S ++++ V+ G L ++A ++ Sbjct: 124 LEQVIDVNKLTSQLDKAIEDLKNNFTQHLSIRSSMGAIEMLSVKFEGKDYTLQELAQIS- 182 Query: 61 LEPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 +P+++V++V + + + + + ++ + LNP +G + IPVP+ T+E R L K A Sbjct: 183 RKPKLVVLNVSTFPQAIPDILKSLMKNQMKLNPQQDGTTIYIPVPKVTKEHRETLSKNAK 242 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 ++ K +VR IR + +K+ K K D+V +E+ I ++ + + E K Sbjct: 243 SFYVKCCDNVRQIRNKQIKAIKQKEKLAK---DLVFRIESYIDILSHQYVSKAEEILETK 299 Query: 180 KKEIM 184 +KE++ Sbjct: 300 QKELL 304 >gi|58378683|ref|XP_308944.2| AGAP006804-PA [Anopheles gambiae str. PEST] gi|55246028|gb|EAA04181.2| AGAP006804-PA [Anopheles gambiae str. PEST] Length = 273 Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 87/186 (46%), Gaps = 6/186 (3%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 + +IDL ++ +M +++ +K D + + R + ++ +++ G L ++ V Sbjct: 89 LGGLIDLDGLRTQMEKSLAAMKDDYVKNLSLRSTTGSIETLRITYEGKDYQLQELGQVVR 148 Query: 61 LEPRMLVVS-VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 P+ LVV+ V + + V + I S + LNP +G L IPVP+ T E R L K A Sbjct: 149 KNPKTLVVNLVAFPQTIPVVLQAIQRSGMNLNPQQDGTTLFIPVPKVTREHREGLAKNAK 208 Query: 120 AYAEKSKISVRNIRRDGMDH-LKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 I R+ +D + +KK +K SED + I I D +K + E Sbjct: 209 VLF----IKCRDRIKDAQNQSIKKLKKQSNVSEDEAFQAQAQITAIADGFVKEAEKLMEL 264 Query: 179 KKKEIM 184 K+ E++ Sbjct: 265 KQAELL 270 >gi|312371081|gb|EFR19345.1| hypothetical protein AND_22651 [Anopheles darlingi] Length = 273 Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 50/186 (26%), Positives = 92/186 (49%), Gaps = 6/186 (3%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 + +IDL ++ +M +++ +++D + + R + ++ +++ G L ++A V Sbjct: 90 LGSLIDLPGLRTQMEKSLAAMREDYIKNLSLRSTTGSIETLRISFEGKDYQLQELAQVVR 149 Query: 61 LEPRMLVVS-VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 P+ +VV+ V + + +V + I S + LNP +G L IPVP+ T E R L K A Sbjct: 150 KNPKTIVVNLVSFPQTIPAVLQAIQRSGMNLNPQQDGTTLFIPVPKVTREHREGLAKNAK 209 Query: 120 AYAEKSKISVRNIRRDGMDH-LKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 I R+ +D + +KK +K ASED + I +I D IK + E Sbjct: 210 VLF----IKCRDRIKDAQNQSIKKLKKQSNASEDEAYQAQQQITQIADGFIKEAEKIMES 265 Query: 179 KKKEIM 184 K+ E++ Sbjct: 266 KQAELL 271 >gi|302678757|ref|XP_003029061.1| hypothetical protein SCHCODRAFT_59355 [Schizophyllum commune H4-8] gi|300102750|gb|EFI94158.1| hypothetical protein SCHCODRAFT_59355 [Schizophyllum commune H4-8] Length = 169 Score = 64.3 bits (155), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 52/174 (29%), Positives = 90/174 (51%), Gaps = 16/174 (9%) Query: 14 MGDTISFLKKDMMTLR---TGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 M + + +KD + +GRV+P +L V+V+ G L +VA V V E L+V++ Sbjct: 1 MKAAVEWFRKDCASAEARASGRVTPQLLSPVRVKIEGGEYRLEEVATVGVREGSTLLVTL 60 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQ---VLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +D+ + +VE ++ES L N + + Q ++IP+P+ T E R L A AE +++ Sbjct: 61 FDESTMKAVESALYESKLP-NIVPQRQDVRTIKIPIPKPTVEARQRLHTEAQRKAEDTRV 119 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 +R ++ S K GK + V LE + QK+ D +I+ +D + KK Sbjct: 120 QLRK-------QMQTSVKKGKFEKHSV-ELE-EYQKLLDRSIEEVDKTLAQMKK 164 >gi|146331652|gb|ABQ22332.1| mitochondrial ribosome recycling factor precursor-like protein [Callithrix jacchus] Length = 90 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 55/91 (60%), Gaps = 2/91 (2%) Query: 94 VEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDM 153 VEG ++R+P+P+ T E R LVK+A K+K S+R +R + M+ LKKS+ + SED Sbjct: 1 VEGTLIRVPIPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNAMNKLKKSKDT--VSEDT 58 Query: 154 VASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 + +E I ++ D T+ ++ K KE++ Sbjct: 59 IRLIEKQISQMADDTVAELERHLAVKTKELL 89 >gi|242798810|ref|XP_002483245.1| ribosome recycling factor, putative [Talaromyces stipitatus ATCC 10500] gi|218716590|gb|EED16011.1| ribosome recycling factor, putative [Talaromyces stipitatus ATCC 10500] Length = 289 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/184 (26%), Positives = 93/184 (50%), Gaps = 7/184 (3%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKVE-AYGSH--VPLNQVANVTV 60 + ++ + D ++ LK+D+ LR+G R +P +++ ++V GS+ V L++VA V Sbjct: 101 FNFSQLQTGISDALTRLKEDLQKLRSGGRFNPEVIEQLRVNLVKGSNETVRLSEVAQVVP 160 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQ---VLRIPVPETTEERRLALVKV 117 R + + V ++++V V I SNL L P + L +P+P T+E R +K Sbjct: 161 KGGRAVTIIVGEEDLVKPVNSAIISSNLSLTPQPDAHNPLQLNVPIPPPTKESRDQAIKA 220 Query: 118 AHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFE 177 A +K+ +VR+ R L+ +K +A D + + ++K+ + K++ FE Sbjct: 221 AKGAMDKAANAVRSARASVHKRLQDMQKKKEARPDDIRKAHDQMEKLVEKAQKDVKDTFE 280 Query: 178 EKKK 181 +K Sbjct: 281 SARK 284 >gi|291237422|ref|XP_002738637.1| PREDICTED: mitochondrial ribosome recycling factor-like [Saccoglossus kowalevskii] Length = 97 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 58/97 (59%), Gaps = 2/97 (2%) Query: 88 LGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSG 147 + LNP EG ++++P+P+ T E R L K A +K+K++VRN+R M+ +K+ + Sbjct: 1 MNLNPQSEGTMIQVPIPKVTREHREHLSKTAKTMCDKAKVNVRNVRSKVMNDIKQHK--D 58 Query: 148 KASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 AS+D++ LE +Q++TD + + K KE++ Sbjct: 59 HASKDVLKMLEKQVQQLTDDFNASAEQLLVAKNKELL 95 >gi|307191744|gb|EFN75186.1| Ribosome-recycling factor, mitochondrial [Harpegnathos saltator] Length = 248 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 44/185 (23%), Positives = 92/185 (49%), Gaps = 5/185 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M +VID+ + ++ I LK + + + R S L+ + V L ++A ++ Sbjct: 64 MEEVIDVNKLTSQLDKAIEGLKNNFVKYLSIRSSVGALEELVVRFEDKDYTLQELAQIS- 122 Query: 61 LEPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 +P+++V+++ + + ++ + ++ + LNP +G + +P+P+ T+E R L K A Sbjct: 123 RKPKLIVLNISTFPQAIPNILNSLSKNQMNLNPQQDGTTVYVPIPKVTKEHRETLSKNAK 182 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 + K +VR+IR + LK+ K D+V +E I ++ I + E K Sbjct: 183 GFYVKCCDNVRDIRNKQIKSLKREESLAK---DLVFKIEGYIDALSQQYISKAEQLLETK 239 Query: 180 KKEIM 184 +KE++ Sbjct: 240 QKELL 244 >gi|328850981|gb|EGG00140.1| hypothetical protein MELLADRAFT_39912 [Melampsora larici-populina 98AG31] Length = 177 Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 48/175 (27%), Positives = 88/175 (50%), Gaps = 5/175 (2%) Query: 14 MGDTISFLKKDMMTL--RTGRVSPSMLDLVKVEAYGS-HVPLNQVANVTVLEPRMLVVSV 70 M +S L+ ++ ++ R GR++P+ LD +KVE G P+ +A V VL+P L V Sbjct: 1 MNSGVSKLRVEIKSIVNRVGRLTPAYLDGLKVEIEGGIRSPIEGLAQVIVLDPTKLSVVA 60 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQ-VLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 +D +E+ +++S+L L P ++ + + +P+ T E R L K A E+++ + Sbjct: 61 YDASHTKMIEQALYDSSLNLTPNLQPDGSIHLAIPKLTTESRQLLSKKAGQVCEQARSVI 120 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RN R+ +K ++D S + +IT + K +D E K K ++ Sbjct: 121 RNSRQLAQKASRKDLDGNLITKDDFKSNNKVLDEITKAHTKLVDE-IENKSKRVL 174 >gi|170036921|ref|XP_001846309.1| ribosome recycling factor, mitochondrial [Culex quinquefasciatus] gi|167879937|gb|EDS43320.1| ribosome recycling factor, mitochondrial [Culex quinquefasciatus] Length = 259 Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 45/185 (24%), Positives = 90/185 (48%), Gaps = 4/185 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 + +V D+ ++ M ++ +K D + + R + ++ +KV G L ++ + Sbjct: 74 LAEVFDVAALRTLMERNVATMKDDYIKNLSLRSATGAMETLKVTYEGKDYQLQELGQIVR 133 Query: 61 LEPRMLVVS-VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 P+ +VV+ V + + +V + I +S + LNP +G L +PVP+ T E R L K A Sbjct: 134 KNPKTVVVNLVSFPQTIPAVLQAIQKSGMNLNPQQDGTTLFVPVPKVTREHREGLAKNAK 193 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 K + ++++ + +KK +K SED+ ++ I I + IK + E K Sbjct: 194 TLFIKCRDAIKDAQN---GQIKKLKKQTDISEDLNHQVQAQITAIANEYIKEAEKMMEIK 250 Query: 180 KKEIM 184 + E++ Sbjct: 251 QAELL 255 >gi|207109446|ref|ZP_03243608.1| ribosome recycling factor [Helicobacter pylori HPKX_438_CA4C1] Length = 86 Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 44/70 (62%) Query: 46 YGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPE 105 YG+ LNQV +V L+ L +S W+K M+ +ER I E+N+G+NP +G+ +++ P Sbjct: 1 YGTPTALNQVGSVMSLDATTLQISPWEKNMLKEIERSIQEANIGVNPNNDGETIKLFFPP 60 Query: 106 TTEERRLALV 115 T E+RL + Sbjct: 61 MTTEQRLRFL 70 >gi|40317624|ref|NP_954646.1| ribosome-recycling factor, mitochondrial isoform 2 precursor [Homo sapiens] gi|56078380|gb|AAH53604.1| Mitochondrial ribosome recycling factor [Homo sapiens] gi|119607934|gb|EAW87528.1| mitochondrial ribosome recycling factor, isoform CRA_g [Homo sapiens] Length = 201 Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 60/106 (56%), Gaps = 1/106 (0%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +I+L+ + + M I LK + R SP LD + V + LNQ++ +++ P Sbjct: 82 IINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMKSP 141 Query: 64 RMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTE 108 ++++V++ E A+ + I ES + LNP VEG ++R+P+P++ + Sbjct: 142 QLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPQSAK 187 >gi|332229923|ref|XP_003264136.1| PREDICTED: ribosome-recycling factor, mitochondrial-like isoform 2 [Nomascus leucogenys] Length = 275 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 60/106 (56%), Gaps = 1/106 (0%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +I+L+ + + M I LK + R SP LD + V + LNQ++ +++ P Sbjct: 156 IINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMKSP 215 Query: 64 RMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTE 108 ++++V++ E A+ + I ES + LNP VEG ++R+P+P++ + Sbjct: 216 QLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPQSAK 261 >gi|332832792|ref|XP_001135581.2| PREDICTED: ribosome-recycling factor, mitochondrial isoform 1 [Pan troglodytes] Length = 275 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 60/106 (56%), Gaps = 1/106 (0%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +I+L+ + + M I LK + R SP LD + V + LNQ++ +++ P Sbjct: 156 IINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMKSP 215 Query: 64 RMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTE 108 ++++V++ E A+ + I ES + LNP VEG ++R+P+P++ + Sbjct: 216 QLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPQSAK 261 >gi|119195787|ref|XP_001248497.1| hypothetical protein CIMG_02268 [Coccidioides immitis RS] Length = 291 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/193 (27%), Positives = 94/193 (48%), Gaps = 15/193 (7%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKVEAYGSH--------VPLNQV 55 D ++ + + D +S LK+D+ LR G R++P +++ V+V S V L+++ Sbjct: 97 FDFSSLSNGIQDALSRLKEDVSKLRVGGRLNPELIENVRVTLKTSASSGKEKETVRLSEL 156 Query: 56 ANVTVLEPRMLVVSVWDKEMVASVERGIHE-SNLGLNPIVEGQ---VLRIPVPETTEERR 111 A V RM+ + V ++E + + + +L LNP + L +P+P T E R Sbjct: 157 AQVIPKGGRMVTILVGEEEFIKPITSALQAVPSLSLNPQPDPHNKLQLNLPIPPPTRESR 216 Query: 112 LALVKVAHAYAEKSKISVRNIRRDGMDHLKK-SRKSGKASEDMVASLENDIQKITDSTIK 170 VK A A EK+ SV+N R + LK K +D+ +LE ++K+ + K Sbjct: 217 DQAVKDAKAAMEKASASVKNARANMNKKLKALGNKKAVRPDDLRKALEQ-MEKLAEKGQK 275 Query: 171 NIDSFFEEKKKEI 183 ++ FE KK + Sbjct: 276 DVKDAFESAKKAL 288 >gi|194247969|dbj|BAG55427.1| hypothetical protein [chlorophyte sp. MBIC11204] Length = 158 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 48/79 (60%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 IDL + M +I L+ + +LR GR SP MLD +KV+ YG + L + +V+V + Sbjct: 80 AIDLGETQRAMESSIERLQGILGSLRAGRASPGMLDTLKVDVYGERMSLKSIGSVSVRDQ 139 Query: 64 RMLVVSVWDKEMVASVERG 82 +MLVVS +D + + ++E+ Sbjct: 140 QMLVVSAFDPQTLPNIEKA 158 >gi|303321624|ref|XP_003070806.1| ribosomal recycling factor, mitochondrial precursor, putative [Coccidioides posadasii C735 delta SOWgp] gi|240110503|gb|EER28661.1| ribosomal recycling factor, mitochondrial precursor, putative [Coccidioides posadasii C735 delta SOWgp] gi|320040287|gb|EFW22220.1| ribosome recycling factor [Coccidioides posadasii str. Silveira] Length = 291 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 54/193 (27%), Positives = 96/193 (49%), Gaps = 15/193 (7%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKVE---AYGSH-----VPLNQV 55 D ++ + + D +S LK+D+ LR G R++P +++ V+V + GS V L+++ Sbjct: 97 FDFSSLSNGIQDALSRLKEDVSKLRVGGRLNPELIENVRVTLKTSAGSGKEKETVRLSEL 156 Query: 56 ANVTVLEPRMLVVSVWDKEMVASVERGIHE-SNLGLNPIVEGQ---VLRIPVPETTEERR 111 A V RM+ + V ++E + + + +L LNP + L +P+P T E R Sbjct: 157 AQVIPKGGRMVTILVGEEEFIKPITSALQAVPSLSLNPQPDPHNKLQLNLPIPPPTRESR 216 Query: 112 LALVKVAHAYAEKSKISVRNIRRDGMDHLKK-SRKSGKASEDMVASLENDIQKITDSTIK 170 VK A A E++ SV+N R + LK K +D+ +LE ++K+ + K Sbjct: 217 DQAVKDAKAAMERASASVKNARANMNKKLKALGNKKAVRPDDLRKALEQ-MEKLAEKGQK 275 Query: 171 NIDSFFEEKKKEI 183 ++ FE KK + Sbjct: 276 DVKDSFESAKKAL 288 >gi|325973353|ref|YP_004250417.1| ribosome recycling factor [Mycoplasma suis str. Illinois] gi|323651955|gb|ADX98037.1| ribosome recycling factor [Mycoplasma suis str. Illinois] Length = 195 Score = 58.2 bits (139), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/160 (25%), Positives = 79/160 (49%), Gaps = 9/160 (5%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 D ++IK RM + + R++P+ ++VE G+ V L+++A V + + R+ Sbjct: 24 DFEHIKKRMNEKLE-------EFTISRLNPTHFYSLQVEYEGNLVSLSEIALVNLEKARL 76 Query: 66 LVVSVW--DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAE 123 L + + +++ +E+ I ++ L ++ LR +PE T+E R +K E Sbjct: 77 LTIKPYLPSQKITHDIEKAIKKAKPNLTINIKDNELRCSIPEPTQEIREEKIKSGKQIVE 136 Query: 124 KSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQK 163 ++KI++RN R+D + K S +S L+ +I K Sbjct: 137 EAKIALRNKRKDLQKYFKNSVQSENQKHSHREQLDKEISK 176 >gi|328779227|ref|XP_623856.3| PREDICTED: ribosome-recycling factor, mitochondrial-like [Apis mellifera] Length = 205 Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 64/123 (52%), Gaps = 4/123 (3%) Query: 63 PRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 P M++++V ++V S+ + +S + LNP EG + IP+P+ T+E R L K+A Y Sbjct: 84 PNMIILNVSAFPQIVPSILEALSKSQMNLNPQQEGTTIYIPIPKITKEHREVLTKMAKQY 143 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 K K + +IR + + LK + K D++ E+ I +K + + K+K Sbjct: 144 FNKCKDIISDIRNEYVKELKNYENAPK---DLIFKAEDYINVTQKEYVKKAEQLLKSKQK 200 Query: 182 EIM 184 E++ Sbjct: 201 ELL 203 >gi|325989788|ref|YP_004249487.1| ribosome-recycling factor [Mycoplasma suis KI3806] gi|323574873|emb|CBZ40533.1| Ribosome-recycling factor [Mycoplasma suis] Length = 195 Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 40/160 (25%), Positives = 79/160 (49%), Gaps = 9/160 (5%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 D ++IK RM + + R++P+ ++VE G+ V L+++A V + + R+ Sbjct: 24 DFEHIKKRMNEKLE-------EFAISRLNPTHFYSLQVEYEGNLVSLSEIALVNLEKARL 76 Query: 66 LVVSVW--DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAE 123 L + + +++ +E+ I ++ L ++ LR +PE T+E R +K E Sbjct: 77 LTIKPYLPSQKITHDIEKSIKKAKPNLTINIKDNELRCSIPEPTQEIREEKIKSGKQIVE 136 Query: 124 KSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQK 163 ++KI++RN R+D + K S +S L+ +I K Sbjct: 137 EAKIALRNKRKDLQKYFKNSVQSENQKHSHREQLDKEISK 176 >gi|300121780|emb|CBK22354.2| unnamed protein product [Blastocystis hominis] Length = 142 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 77/147 (52%), Gaps = 7/147 (4%) Query: 37 MLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEG 96 M+ +KVE G ++ +A V +S + ++ V + + S+L LNP ++ Sbjct: 1 MIGQLKVELDGKSAVMSSIAQVAANTQ----ISYLN---LSFVVKTLKSSDLNLNPQIDK 53 Query: 97 QVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVAS 156 +RI +P+TT+E R ++K E+ K +R +R+ MD ++ K+ S+D ++S Sbjct: 54 NSVRIQIPKTTKETRQKMIKQVALECEQQKSKLRAVRKRYMDKVRVIEKNVSISKDDISS 113 Query: 157 LENDIQKITDSTIKNIDSFFEEKKKEI 183 ++ I +ITD K + + K+KE+ Sbjct: 114 MKKKIDEITDRVSKEMAEMMKRKEKEL 140 >gi|317157882|ref|XP_003190900.1| ribosome recycling factor [Aspergillus oryzae RIB40] Length = 272 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 87/185 (47%), Gaps = 7/185 (3%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKVE-AYGSH--VPLNQVANVTVL 61 DL + D + + LK D+ LR G R++ + ++V+ + G V L ++A V Sbjct: 85 DLAQLHDGIAAAVCRLKDDLSKLRVGGRLNTDAIASLRVQLSKGGKETVKLGELAQVVPK 144 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQ---VLRIPVPETTEERRLALVKVA 118 RM+ + +++ + + + S+L L P + L IP+P T+E R V VA Sbjct: 145 GGRMVTILATEEDHIKPITSAVVSSDLSLTPQPDAHNSLQLNIPIPPPTKESRDQTVSVA 204 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 A EK+ +VR+ R L+ +K A D V + ++K+T+ + + FE Sbjct: 205 KAAMEKATAAVRDSRGSVHKRLQDMQKKKIARPDDVRKAQEQMEKVTEKGQREVRDLFEA 264 Query: 179 KKKEI 183 KK + Sbjct: 265 AKKAM 269 >gi|321466374|gb|EFX77370.1| hypothetical protein DAPPUDRAFT_305846 [Daphnia pulex] Length = 288 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/168 (25%), Positives = 87/168 (51%), Gaps = 3/168 (1%) Query: 3 QVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLE 62 +++ + ++K + + LK D + + R + ++ +K++ G L ++A + Sbjct: 105 ELVKVSSLKQDLQKGLDQLKSDYVKHLSLRSASGSIENLKIDYEGETYTLQEIAQIGKKG 164 Query: 63 PRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 ++LVV++ ++ V + I++S +GLNP +G + IP+P+ T E R L K A Sbjct: 165 SQLLVVNLSGFPTLMRDVLKAINDSGMGLNPQQDGTKIFIPIPKVTREYRENLAKNAKTM 224 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTI 169 +K K R+I+ + +KK K + S D+ S++ IQ +T+ + Sbjct: 225 FQKFKDHSRDIQNRYIRDVKKKEK--EVSSDLSHSVQQQIQTMTEQYV 270 >gi|242022121|ref|XP_002431490.1| ribosome recycling factor, putative [Pediculus humanus corporis] gi|212516778|gb|EEB18752.1| ribosome recycling factor, putative [Pediculus humanus corporis] Length = 248 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/177 (25%), Positives = 82/177 (46%), Gaps = 7/177 (3%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N+ ++ + + D + I K D++ + R S ++ K+ G+ + +A + Sbjct: 62 LNEYLNFEKLIDDINRPIESFKDDLIQQVSLRSSIGAIENTKIVYDGNPYTIQDLAEINK 121 Query: 61 LEPRMLVVSV-WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 P+M V+ + + +V + ES+L LN EG L +P+P+ T E R L K A Sbjct: 122 KNPKMFVLDFSCFPDAIGTVVKTFQESHLNLNVQQEGTKLIVPIPKVTREHRELLAKKAK 181 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSG-----KASEDMVASLENDIQKITDSTIKN 171 Y K K S+R ++ L K G + +E +VA + I KI + +KN Sbjct: 182 MYFVKCKDSIREVQMKYTKKLNNVEKLGSEVKFRITEQLVALGDKHI-KIAEDMLKN 237 >gi|238508549|ref|XP_002385466.1| Hsp70 chaperone (HscA), putative [Aspergillus flavus NRRL3357] gi|220688985|gb|EED45337.1| Hsp70 chaperone (HscA), putative [Aspergillus flavus NRRL3357] Length = 886 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/183 (26%), Positives = 86/183 (46%), Gaps = 7/183 (3%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKVE-AYGSH--VPLNQVANVTVL 61 DL + D + + LK D+ LR G R++ + ++V+ + G V L ++A V Sbjct: 699 DLAQLHDGIAAAVCRLKDDLSKLRVGGRLNTDAIASLRVQLSKGGKETVKLGELAQVVPK 758 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQ---VLRIPVPETTEERRLALVKVA 118 RM+ + +++ + + + S+L L P + L IP+P T+E R V VA Sbjct: 759 GGRMVTILATEEDHIKPITSAVVSSDLSLTPQPDAHNSLQLNIPIPPPTKESRDQTVSVA 818 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 A EK+ +VR+ R L+ +K A D V + ++K+T+ + + FE Sbjct: 819 KAAMEKATAAVRDSRGSVHKRLQDMQKKKIARPDDVRKAQEQMEKVTEKGQREVRDLFEA 878 Query: 179 KKK 181 KK Sbjct: 879 AKK 881 >gi|114690063|ref|XP_001138129.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes] Length = 209 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 57/106 (53%), Gaps = 1/106 (0%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +I+L+ + + M I K + R SP LD + V + LNQ+ ++V P Sbjct: 82 IINLEEVNEEMKSVIEAHKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQIRQISVKLP 141 Query: 64 RMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTE 108 ++++V++ E + + I ES + LNP VEG ++R+P+P+ ++ Sbjct: 142 QLILVNMASFPECTVAAIKAIRESGMNLNPEVEGTLIRVPIPQISQ 187 >gi|315302963|ref|ZP_07873687.1| ribosome-recycling factor [Listeria ivanovii FSL F6-596] gi|313628668|gb|EFR97077.1| ribosome-recycling factor [Listeria ivanovii FSL F6-596] Length = 77 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 45/71 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K++M L + T+R GR + S+LD + V+ YG+ P+NQ+A+++V E RML Sbjct: 6 LSKSKEKMEKAEQALTRQFGTIRAGRANASLLDRLTVDYYGAPTPVNQMASISVPEARML 65 Query: 67 VVSVWDKEMVA 77 +++ +DK ++ Sbjct: 66 LITPYDKTILG 76 >gi|258575539|ref|XP_002541951.1| predicted protein [Uncinocarpus reesii 1704] gi|237902217|gb|EEP76618.1| predicted protein [Uncinocarpus reesii 1704] Length = 249 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 54/193 (27%), Positives = 96/193 (49%), Gaps = 18/193 (9%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKVEA-YGS----HVPLNQVANV 58 +D ++ + + D +S LK+D+ LR G R++P +++ V+V GS V LN++A V Sbjct: 58 LDFSSLTNGIQDAVSRLKEDISKLRPGGRLNPELIENVRVTVKSGSTGKESVKLNELAQV 117 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHE-SNLGLNPIVEGQ---VLRIPVPETTEERRLAL 114 R + + + +++ V + +L LNP + L +P+P T E R + Sbjct: 118 IPKGGRTITILLGEEDYAKPVTSALQAMPSLSLNPQQDPHNKLQLNVPIPPPTRESRDQV 177 Query: 115 VKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKA----SEDMVASLENDIQKITDSTIK 170 +K A A EK+ +V+N R + KK + +G +D+ +LE ++KIT K Sbjct: 178 LKEAKAAMEKASTTVKNAR---ANLNKKFKAAGNKKVVRPDDLHKALE-QMEKITAKGQK 233 Query: 171 NIDSFFEEKKKEI 183 + FE KK + Sbjct: 234 EVKDAFEAAKKAL 246 >gi|149019534|ref|ZP_01834853.1| ribosome recycling factor [Streptococcus pneumoniae SP23-BS72] gi|147930909|gb|EDK81889.1| ribosome recycling factor [Streptococcus pneumoniae SP23-BS72] Length = 74 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 1/68 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M VI ++ K+RM + L ++ +R GR + S+LD V VE YG PLNQ+A++T+ Sbjct: 1 MANVI-IEKAKERMTQSHQSLAREFGGIRAGRANASLLDRVHVEYYGVETPLNQIASITI 59 Query: 61 LEPRMLVV 68 E R+L+V Sbjct: 60 PEARVLLV 67 >gi|299749683|ref|XP_001836265.2| hypothetical protein CC1G_06350 [Coprinopsis cinerea okayama7#130] gi|298408550|gb|EAU85637.2| hypothetical protein CC1G_06350 [Coprinopsis cinerea okayama7#130] Length = 254 Score = 54.3 bits (129), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 92/177 (51%), Gaps = 20/177 (11%) Query: 14 MGDTISFLKKDMMTLRT---GRVSPSMLDLVKVEAYGSH---VPLNQVANVTVLEPRMLV 67 M + + + KK+ T GR++P++L V+V+ GS L ++A V V E L+ Sbjct: 84 MKNAVDWFKKECAGYETRASGRITPAILSPVRVK-LGSDPKDYRLEELATVGVREGSTLL 142 Query: 68 VSVWDKEMVASVERGIHESNL-GLNPIVE-GQVLRIPVPETTEERRLALVKVAHAYAEKS 125 ++++D+ + +E +H + G+ P + + +++P+P+ T E RL+L A AE+ Sbjct: 143 ITLFDEHNMKHIESALHTCGIPGVVPHRQDNRTIKVPIPKPTVESRLSLYAAAKKKAEEI 202 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLE-NDIQKITDSTIKNIDSFFEEKKK 181 ++ V RR LK+ GK + S+E + QK+TD I +D ++ +K Sbjct: 203 RVQV---RRQHSTSLKR----GKFEKH---SIEIEEFQKLTDRYIGEVDKILKDLQK 249 >gi|309800200|ref|ZP_07694383.1| ribosome recycling factor [Streptococcus infantis SK1302] gi|308116171|gb|EFO53664.1| ribosome recycling factor [Streptococcus infantis SK1302] Length = 75 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 37/57 (64%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 K+RM + L ++ ++R GR + S+LD + VE YG PLNQ+A++T+ E R+ V Sbjct: 10 KERMTQSHHSLAREFGSIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEARVFV 66 >gi|195167879|ref|XP_002024760.1| GL22438 [Drosophila persimilis] gi|194108165|gb|EDW30208.1| GL22438 [Drosophila persimilis] Length = 105 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 3/104 (2%) Query: 81 RGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHL 140 R I +S + LNP +G L IP+P+ ++ R L K A A K + ++RN++ DH+ Sbjct: 2 RAIAKSGMNLNPQQDGTTLFIPIPKVSKVHRENLSKNAKALFVKYRDAIRNVQN---DHI 58 Query: 141 KKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +K +K +D + + + I D I D K+KE++ Sbjct: 59 RKLKKQPDVGQDDAFAAQTQVTAIGDKFIAEADKLLASKQKELL 102 >gi|254573108|ref|XP_002493663.1| Mitochondrial ribosome recycling factor [Pichia pastoris GS115] gi|238033462|emb|CAY71484.1| Mitochondrial ribosome recycling factor [Pichia pastoris GS115] Length = 247 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/186 (26%), Positives = 87/186 (46%), Gaps = 16/186 (8%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ I+DR T+ +K + ++ G+ +P + D +KV P VA T + R L Sbjct: 69 LKEIEDRFKLTLQEHQKKINEIKLGKSNPKIFDSLKVSIAKDLQPFPSVAQTTS-KGRNL 127 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVE---GQVLRIPVPETTEERRLALVKVAHAYAE 123 +V+V+D +V V I S L LNP V+ Q+L++P+ T E + +K E Sbjct: 128 LVTVFDPSLVKYVVSSILSSGLNLNPEVDPKNPQLLKVPLTAPTAETKKETLKALKNNLE 187 Query: 124 KSKISVRN------IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFE 177 + S+ N IR + K ++ ED + L N+I+K+ +I F+ Sbjct: 188 HYRHSITNKHSLASIRAHYLKEFKGNK------EDSIKKLVNEIEKVHKDYSNSIHEQFK 241 Query: 178 EKKKEI 183 + +K + Sbjct: 242 KVEKTL 247 >gi|227547148|ref|ZP_03977197.1| possible protein-synthesizing GTPase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227212367|gb|EEI80263.1| possible protein-synthesizing GTPase [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 68 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 34/54 (62%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 RM + K + +RTGR SPS+LD + VE YG+ PL Q+A+VTV + R L Sbjct: 12 RMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTL 65 >gi|190347462|gb|EDK39732.2| hypothetical protein PGUG_03830 [Meyerozyma guilliermondii ATCC 6260] Length = 255 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 63/137 (45%), Gaps = 9/137 (6%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 ID + K +M + I K + GR SPS+ D + V+ P VA T ++ R Sbjct: 71 IDFDDAKRKMNEVIEKFSKSANEAKLGRTSPSIFDHLSVDTEFGPQPFTSVAQ-TSIKGR 129 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVE---GQVLRIPVPETTEERRLALVKVAHAY 121 +++V+D S+ + SNL +NP V+ L++P+P T E + K Sbjct: 130 NFLITVFDTANSQSIINAVLGSNLNMNPQVDPSNKSALKVPLPPLTVESKKESAKQLKGV 189 Query: 122 AEK-----SKISVRNIR 133 EK K+++ +IR Sbjct: 190 YEKFKNGSGKLTLASIR 206 >gi|225711692|gb|ACO11692.1| Ribosome recycling factor, mitochondrial precursor [Caligus rogercresseyi] Length = 260 Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/184 (25%), Positives = 89/184 (48%), Gaps = 23/184 (12%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 +LQ D + D + + +T+R S + LD + + G PL+++A ++ + + Sbjct: 85 ELQGSYDDLMDHFA----NNLTMR----STNSLDKLPINFEGDVYPLHELAQISKKDAKR 136 Query: 66 LVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 L++ +V+ V + I ESN+ L P +G L +P+P+ T E R L K A A K Sbjct: 137 LIIDCSSFPGLVSPVSKAISESNMNLRPQADGDRLFVPIPKVTREYREQLSKGAKASFLK 196 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLE----NDIQKITDSTIKNIDSFFEEKK 180 +K R I+ + + A++++ S E D Q + + I+++ + F + Sbjct: 197 AKEGFRRIQNNYIS----------AAQNVAMSPECRVPKDKQHMVEEIIRSVANDFAHRA 246 Query: 181 KEIM 184 +EI+ Sbjct: 247 EEIL 250 >gi|301126635|ref|XP_002909859.1| conserved hypothetical protein [Phytophthora infestans T30-4] gi|262101705|gb|EEY59757.1| conserved hypothetical protein [Phytophthora infestans T30-4] Length = 109 Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 2/85 (2%) Query: 99 LRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLE 158 L I P+ ++E R L+K AE+++ VR +R+D M+H KK + + SED V + Sbjct: 24 LEISFPKMSKETRADLLKATKKQAEQARQHVRRVRQDAMNHAKKLKDA--VSEDDVEVQK 81 Query: 159 NDIQKITDSTIKNIDSFFEEKKKEI 183 IQK TDS I ID K+K++ Sbjct: 82 ERIQKATDSAIAEIDKLLAAKEKDL 106 >gi|198419631|ref|XP_002119431.1| PREDICTED: similar to mitochondrial ribosome recycling factor [Ciona intestinalis] Length = 270 Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/190 (23%), Positives = 91/190 (47%), Gaps = 16/190 (8%) Query: 3 QVIDLQNIKDRMGDTISFLKKDMMT--LRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +V+DL +++ M + FL+ D T + G S+ + + + PLN++ ++ Sbjct: 88 EVLDLLEVENEMKKCVLFLQ-DAYTKEFKVG-ADLSIFEQMTINIENDQYPLNEIGQISK 145 Query: 61 LEPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 RM+VV + + + E I +SN+ LNP G ++++ +P+ T E R + K A Sbjct: 146 PTQRMIVVDMESFPQYIKEAEAVIRDSNMNLNPNTTGTLIKVAIPQVTAEYRQLVAKKAK 205 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDS----F 175 +RNI+ M+ K K E + +LE+ I++ +++ + Sbjct: 206 ERLNLCNEKLRNIK--AMN-----EKLAKNHEGLTENLEHGIKEQLSVYLEHYKTKAMEV 258 Query: 176 FEEKKKEIMH 185 ++ K+KE++H Sbjct: 259 YKAKEKELLH 268 >gi|320584172|gb|EFW98383.1| Mitochondrial ribosome recycling factor [Pichia angusta DL-1] Length = 223 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 44/180 (24%), Positives = 84/180 (46%), Gaps = 8/180 (4%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+++ + + KK + ++ G+ P + + +KV VP +A T L+ + L Sbjct: 48 LKDVDTQFQSVLDKYKKKITEIKLGKADPQIFNKLKVRVENGTVPFTDIAQTT-LKGKFL 106 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEG---QVLRIPVPETTEERRLALVKVAHAYAE 123 ++V+D + + I +NL LN + Q+LR+ +P TT++ + K Sbjct: 107 TITVFDPKNSKRIISAILGTNLNLNAEEDPKNPQLLRVALPSTTKDLKEKQAKELKENFN 166 Query: 124 KSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 K S +IR + LKK R S D + L NDI+K + + + + ++E +K + Sbjct: 167 IFKASSASIRAQVLKDLKKVR----GSADTLRKLLNDIEKTHKNYTEKLTNAYKEAEKSL 222 >gi|328723889|ref|XP_001942966.2| PREDICTED: ribosome-recycling factor, mitochondrial-like [Acyrthosiphon pisum] Length = 274 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 41/175 (23%), Positives = 83/175 (47%), Gaps = 4/175 (2%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 +K M ++ LK + + + R S LD + V G + +A + P+ ++++ Sbjct: 99 MKTEMEKAVAALKNNYIKNLSLRSSTGALDSLPVTFEGDEYVIQDLAQIVRKNPKTIILN 158 Query: 70 VWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 + + + +V + S + LNP + + IP+P+ T+E R L K A A K+K S Sbjct: 159 MTSFPQAIPAVLESLKASGMNLNPQQDKTSIFIPIPKVTKEHRENLSKGAKALFIKTKDS 218 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 ++ ++ + LK + + D+V +L++ I + D + EEK+ E+ Sbjct: 219 IKELQNKNIKVLK---DNDALATDLVHTLQDQITALADKYVLEAQRIMEEKQSEL 270 >gi|328718680|ref|XP_001942916.2| PREDICTED: ribosome-recycling factor, mitochondrial-like [Acyrthosiphon pisum] Length = 176 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 41/175 (23%), Positives = 83/175 (47%), Gaps = 4/175 (2%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 +K M ++ LK + + + R S LD + V G + +A + P+ ++++ Sbjct: 1 MKTEMEKAVAALKNNYIKNLSLRSSTGALDSLPVTFEGDEYVIQDLAQIVRKNPKTIILN 60 Query: 70 VWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 + + + +V + S + LNP + + IP+P+ T+E R L K A A K+K S Sbjct: 61 MTSFPQAIPAVLESLKASGMNLNPQQDKTSIFIPIPKVTKEHRENLSKGAKALFIKTKDS 120 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 ++ ++ + LK + + D+V +L++ I + D + EEK+ E+ Sbjct: 121 IKELQNKNIKVLK---DNDALATDLVHTLQDQITALADKYVLEAQRIMEEKQSEL 172 >gi|332027531|gb|EGI67608.1| Ribosome-recycling factor, mitochondrial [Acromyrmex echinatior] Length = 146 Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/146 (23%), Positives = 78/146 (53%), Gaps = 5/146 (3%) Query: 40 LVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQV 98 ++ V+ G L ++A ++ +P+++V++V + + + + + ++ + LNP +G Sbjct: 1 MLSVKFDGKDFTLQELAKIS-RKPKLIVLNVSTFPQAIPDILKSLTKNQMKLNPQQDGTT 59 Query: 99 LRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLE 158 + +P+P+ T+E+R L K A ++ K +VR +R + +K+ K K D+V +E Sbjct: 60 IYVPIPKVTKEQREILSKNAKSFYVKCCDNVRQVRNKQIKAVKQKEKLAK---DLVFRIE 116 Query: 159 NDIQKITDSTIKNIDSFFEEKKKEIM 184 + I ++ + E K+KE++ Sbjct: 117 SYIDILSHQYTNKAEQMLETKQKELL 142 >gi|67925885|ref|ZP_00519171.1| ribosome releasing factor [Crocosphaera watsonii WH 8501] gi|67852264|gb|EAM47737.1| ribosome releasing factor [Crocosphaera watsonii WH 8501] Length = 56 Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 22/53 (41%), Positives = 37/53 (69%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVT 59 L ++KD M ++ ++ T+RTGR +P++LD V V+ YG+ PLNQ+AN++ Sbjct: 2 LDDLKDNMQKSVEATQRSFNTIRTGRANPAILDRVTVDYYGTETPLNQLANIS 54 >gi|307568226|pdb|3LF9|A Chain A, Crystal Structure Of Hiv Epitope-Scaffold 4e10_d0_1is1a_001_c Length = 121 Score = 51.2 bits (121), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 44/79 (55%) Query: 107 TEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITD 166 TEERR LVK+ AE +++VRNI RD + L K + + ++ +IQK+TD Sbjct: 34 TEERRKDLVKIVRGEAEGGRVAVRNIARDAANDLAALGKDKEVNWFDISQALWEIQKLTD 93 Query: 167 STIKNIDSFFEEKKKEIMH 185 +K ID K+KE+M Sbjct: 94 VAVKKIDEVLAAKEKELME 112 >gi|255948524|ref|XP_002565029.1| Pc22g10210 [Penicillium chrysogenum Wisconsin 54-1255] gi|211592046|emb|CAP98309.1| Pc22g10210 [Penicillium chrysogenum Wisconsin 54-1255] Length = 269 Score = 51.2 bits (121), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 85/186 (45%), Gaps = 7/186 (3%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKVEAYGSH---VPLNQVANVTV 60 DL + + + ++ LK D+ LR G R + ++L+ ++V+ V L +A V Sbjct: 81 FDLSQLHNGISTAVARLKDDLSKLRAGGRFNTAVLESLRVQLSKDSKDSVKLGDLAQVVP 140 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQ---VLRIPVPETTEERRLALVKV 117 RM+ + +++ + + I SNL L P + L IP+P T+E R V+ Sbjct: 141 KGGRMVTLLAAEEDHLKPLTSAIVSSNLSLTPQPDPHNALQLNIPIPPPTKESRDKNVQA 200 Query: 118 AHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFE 177 A EK+ VR+ R L+ +K A D V + ++K+T+ K + FE Sbjct: 201 AKQAFEKAAGVVRDSRGAMHKRLQDMQKKKLARPDDVRKAHDQMEKVTEQGQKEVKDAFE 260 Query: 178 EKKKEI 183 KK + Sbjct: 261 GAKKTL 266 >gi|237831449|ref|XP_002365022.1| hypothetical protein TGME49_057980 [Toxoplasma gondii ME49] gi|211962686|gb|EEA97881.1| hypothetical protein TGME49_057980 [Toxoplasma gondii ME49] gi|221487127|gb|EEE25373.1| ribosome recycling factor, putative [Toxoplasma gondii GT1] gi|221506812|gb|EEE32429.1| ribosome recycling factor, putative [Toxoplasma gondii VEG] Length = 290 Score = 51.2 bits (121), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 71/119 (59%), Gaps = 9/119 (7%) Query: 74 EMVASVERGIHESNLGL-----NPIVEGQV----LRIPVPETTEERRLALVKVAHAYAEK 124 +++A++E+ + ++LGL N +G L + P T+ERRL LV A A AE+ Sbjct: 169 QLLAAIEKALSTASLGLSVRTRNADEKGTKRQMELLVDFPPLTQERRLQLVSEAKAEAEE 228 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 ++ +R +RRD ++ L+ +K+G ED ++ L++ +Q++T+ I IDS K+K++ Sbjct: 229 GRVVLRRLRRDLVEELRGVKKAGGIGEDRISKLQDRVQQVTEKKIAEIDSALASKEKQL 287 >gi|50424817|ref|XP_460998.1| DEHA2F14630p [Debaryomyces hansenii CBS767] gi|60390377|sp|Q6BLC3|RRF1_DEBHA RecName: Full=Ribosome-recycling factor, mitochondrial; Short=RRF; AltName: Full=Ribosome-releasing factor, mitochondrial; Flags: Precursor gi|49656667|emb|CAG89364.1| DEHA2F14630p [Debaryomyces hansenii] Length = 257 Score = 50.8 bits (120), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 6/115 (5%) Query: 2 NQV--IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVT 59 NQV ID + ++ I K + G+ SP++ D + VE V VA T Sbjct: 64 NQVPEIDFDDATNKFKGVIERFSKQANEAKLGKTSPNIFDKLIVETANGEVGFTSVAQTT 123 Query: 60 VLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEG---QVLRIPVPETTEERR 111 V + R +++V+D V S+ + S+L +NP ++ Q L++P+P T E + Sbjct: 124 V-KGRNFMITVFDPSNVKSIINAVLGSDLNMNPQIDPSNKQTLKVPLPPLTTESK 177 >gi|327304937|ref|XP_003237160.1| ribosome recycling factor [Trichophyton rubrum CBS 118892] gi|326460158|gb|EGD85611.1| ribosome recycling factor [Trichophyton rubrum CBS 118892] Length = 295 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 55/201 (27%), Positives = 91/201 (45%), Gaps = 23/201 (11%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKVEAY--GS------------- 48 D ++ D + D +S LK+D+ LR G RV+P ++ ++V + GS Sbjct: 94 FDFSSLNDSIKDAVSRLKEDLAKLRGGGRVTPEAIENLRVSLHKPGSVDVGKGKKGASSS 153 Query: 49 ---HVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQ---VLRIP 102 V L +VA+V R + + V ++ V V I S+L LNP + L +P Sbjct: 154 SKETVKLGEVASVIPKGGRSVSILVGEEHDVKHVMSAIISSDLSLNPQTDPHNLLQLNVP 213 Query: 103 VPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQ 162 +P T+E R VK A E++ VRN R LK +D+ +++ ++ Sbjct: 214 IPPPTKESREQTVKDAKIAMERASNIVRNGRAALNKKLKGKELKKLRPDDVRKAIDQ-ME 272 Query: 163 KITDSTIKNIDSFFEEKKKEI 183 KI++ K + FE KK + Sbjct: 273 KISEKGQKEVKDVFEAAKKAL 293 >gi|326471947|gb|EGD95956.1| ribosome recycling factor [Trichophyton tonsurans CBS 112818] Length = 295 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 23/201 (11%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKVEAY------------GSH-- 49 D ++ D + D ++ LK+D+ LR+G RV+P ++ ++V + G+ Sbjct: 94 FDFSSLNDSIKDAVTRLKEDLAKLRSGGRVTPEAIENLRVSLHKPGGADVGKGKKGASSS 153 Query: 50 ----VPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQ---VLRIP 102 V L +VA+V R + + V ++ V V I S+L LNP + L +P Sbjct: 154 SKETVKLGEVASVIPKGGRSVSILVGEEHDVKPVMSAITSSDLSLNPQTDPHNPLQLNVP 213 Query: 103 VPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQ 162 +P T+E R V+ A EK+ VRN R LK +D+ +++ ++ Sbjct: 214 IPPPTKESREQTVRDAKVAMEKASNIVRNGRAALNKKLKGKELKKLRPDDVRKAVDQ-ME 272 Query: 163 KITDSTIKNIDSFFEEKKKEI 183 KI + K + FE KK + Sbjct: 273 KIAEKGQKEVKDVFEAAKKAL 293 >gi|260944354|ref|XP_002616475.1| hypothetical protein CLUG_03716 [Clavispora lusitaniae ATCC 42720] gi|238850124|gb|EEQ39588.1| hypothetical protein CLUG_03716 [Clavispora lusitaniae ATCC 42720] Length = 246 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 4/115 (3%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 ID+ + R+ I K + G+ +P + D ++VE VA T L+ R Sbjct: 58 IDMDEVTKRLQSVIDKFAKHANEAKLGKTNPQIFDHLQVETADGEAVFTSVAQ-TALKGR 116 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEG---QVLRIPVPETTEERRLALVK 116 +++V+D V + S+L +NPI + Q+L++P+P T E + VK Sbjct: 117 NFIITVFDPANTKHVVNAVLASDLNMNPIADPSNKQMLKVPLPPVTTESKKENVK 171 >gi|302506647|ref|XP_003015280.1| hypothetical protein ARB_06403 [Arthroderma benhamiae CBS 112371] gi|291178852|gb|EFE34640.1| hypothetical protein ARB_06403 [Arthroderma benhamiae CBS 112371] Length = 295 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 90/201 (44%), Gaps = 23/201 (11%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKVEAY------------GSH-- 49 D ++ D + D ++ LK+D+ LR G RV+P ++ ++V + G+ Sbjct: 94 FDFSSLNDSIKDAVTRLKEDLAKLRGGGRVTPEAIENLRVSLHKPGGADVGKGKKGASSS 153 Query: 50 ----VPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQ---VLRIP 102 V L +VA+V R + + V ++ V V I S+L LNP + L +P Sbjct: 154 SKETVKLGEVASVIPKGGRSVSILVGEEHDVKPVMSAITSSDLSLNPQPDPHNPLQLNVP 213 Query: 103 VPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQ 162 +P T+E R VK A EK+ VRN R LK +D+ +++ ++ Sbjct: 214 IPPPTKESREQTVKDAKVAMEKASNIVRNGRAALNKKLKGKELKKLRPDDVRKAIDQ-ME 272 Query: 163 KITDSTIKNIDSFFEEKKKEI 183 KI + K + FE KK + Sbjct: 273 KIAEKGQKEVKDVFEAAKKAL 293 >gi|302666357|ref|XP_003024779.1| hypothetical protein TRV_01061 [Trichophyton verrucosum HKI 0517] gi|291188849|gb|EFE44168.1| hypothetical protein TRV_01061 [Trichophyton verrucosum HKI 0517] Length = 295 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 90/201 (44%), Gaps = 23/201 (11%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKVEAY------------GSH-- 49 D ++ D + D ++ LK+D+ LR G RV+P ++ ++V + G+ Sbjct: 94 FDFSSLNDSIKDAVTRLKEDLAKLRGGGRVTPEAIENLRVSLHKPGGADVGKGKKGASSS 153 Query: 50 ----VPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQ---VLRIP 102 V L +VA+V R + + V ++ V V I S+L LNP + L +P Sbjct: 154 SKETVKLGEVASVIPKGGRSVSILVGEEHDVKPVMSAITSSDLSLNPQPDPHNPLQLNVP 213 Query: 103 VPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQ 162 +P T+E R VK A EK+ VRN R LK +D+ +++ ++ Sbjct: 214 IPPPTKESREQTVKDAKVAMEKASNIVRNGRAALNKKLKGKELKKLRPDDVRKAIDQ-ME 272 Query: 163 KITDSTIKNIDSFFEEKKKEI 183 KI + K + FE KK + Sbjct: 273 KIAEKGQKEVKDVFEAAKKAL 293 >gi|324522561|gb|ADY48080.1| Ribosome-recycling factor [Ascaris suum] Length = 267 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 1/75 (1%) Query: 47 GSHVPLNQVANVTVLEPRMLVVSVWDK-EMVASVERGIHESNLGLNPIVEGQVLRIPVPE 105 G +N++ VT+ P+M++++ D + + + + +SNL +NP EG L +PVP+ Sbjct: 128 GEEHKMNRLGRVTLKSPQMVMINFGDNPTAIKAAKLALQKSNLNVNPQQEGVTLYVPVPK 187 Query: 106 TTEERRLALVKVAHA 120 T ERR L A A Sbjct: 188 MTRERREYLASTAKA 202 >gi|170096781|ref|XP_001879610.1| predicted protein [Laccaria bicolor S238N-H82] gi|164645013|gb|EDR09261.1| predicted protein [Laccaria bicolor S238N-H82] Length = 227 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 77/148 (52%), Gaps = 13/148 (8%) Query: 30 TGRVSPSMLDLVKVEAYGSH--VPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESN 87 +GRV+P++L V+V+ + L ++A V V + L+++++D+ + VE +H Sbjct: 75 SGRVTPALLSPVRVKLPSAEKEFKLEELATVGVRDGTTLLITLFDEHTIKHVESALHTCK 134 Query: 88 L-GLNP-IVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRK 145 + G+ P + + ++IP+P+ T + R AL A AE+ ++ +R S K Sbjct: 135 IPGVVPHRYDDRTIKIPIPKPTVDARHALYAAAKRKAEEMRVQIRK-------QHSLSVK 187 Query: 146 SGKASEDMVASLENDIQKITDSTIKNID 173 GK + V LE + QK+TD I +D Sbjct: 188 RGKFEKHSV-ELE-EFQKLTDRYIGEVD 213 >gi|315046034|ref|XP_003172392.1| hypothetical protein MGYG_04984 [Arthroderma gypseum CBS 118893] gi|311342778|gb|EFR01981.1| hypothetical protein MGYG_04984 [Arthroderma gypseum CBS 118893] Length = 295 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 55/201 (27%), Positives = 92/201 (45%), Gaps = 23/201 (11%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKVEAY---GSHVP--------- 51 D ++ D + D ++ LK+D+ LR G RV+P ++ ++V + G+ V Sbjct: 94 FDFSSLHDSIKDAVTRLKEDLSKLRGGGRVTPEAIENLRVSLHKVGGAEVGKGKKGASSS 153 Query: 52 ------LNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQ---VLRIP 102 L ++A+V R + + V ++ V V I S+L LNP + L + Sbjct: 154 SKDTARLGEIASVIPKGGRSVSILVGEEHDVKPVMSAITASDLSLNPQADPHNPLQLNVA 213 Query: 103 VPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQ 162 +P T+E R VK A A EK+ VRN R ++ K + KA D V + ++ Sbjct: 214 IPPPTKESREQTVKDAKAAMEKASNIVRN-GRAALNKKLKGKDLKKARPDDVRKAVDQME 272 Query: 163 KITDSTIKNIDSFFEEKKKEI 183 KI + K++ FE KK + Sbjct: 273 KIAEKGQKDVKDVFEAAKKAL 293 >gi|326477187|gb|EGE01197.1| ribosome recycling factor [Trichophyton equinum CBS 127.97] Length = 295 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 23/201 (11%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKVEAY------------GSH-- 49 D ++ D + D ++ LK+D+ LR+G RV+P ++ ++V + G+ Sbjct: 94 FDFSSLNDSIKDAVTRLKEDLAKLRSGGRVTPEAIENLRVSLHKPGGADVGKGKKGASSS 153 Query: 50 ----VPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQ---VLRIP 102 V L +VA+V R + + V ++ V V I S+L LNP + L +P Sbjct: 154 SKETVKLGEVASVIPKGGRSVSILVGEEHDVKPVMSAITSSDLSLNPQTDPHNPLQLNVP 213 Query: 103 VPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQ 162 +P T+E R V+ A EK+ VRN R LK +D+ +++ ++ Sbjct: 214 IPPPTKESREQTVRDAKVAMEKASNIVRNGRAALNKKLKGKELKKLRPDDVRKAVDQ-ME 272 Query: 163 KITDSTIKNIDSFFEEKKKEI 183 KI + K + FE KK + Sbjct: 273 KIAEKGQKEVKDVFEAVKKAL 293 >gi|159163384|pdb|1WIH|A Chain A, Solution Structure Of Rsgi Ruh-021, A Domain Ii Of Ribosome Recycling Factor From Mouse Cdna Length = 84 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 1/79 (1%) Query: 31 GRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD-KEMVASVERGIHESNLG 89 G S LD + V V LNQ+ +++ P++++V++ E A+ + I ES + Sbjct: 1 GSSGSSGLDHITVVTADGKVALNQIGQISMKSPQVILVNMASFPECTAAAIKAIRESGMN 60 Query: 90 LNPIVEGQVLRIPVPETTE 108 LNP VEG ++R+P+P+ T Sbjct: 61 LNPEVEGTLIRVPIPKVTS 79 >gi|328354509|emb|CCA40906.1| Ribosome-recycling factor [Pichia pastoris CBS 7435] Length = 223 Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/128 (29%), Positives = 63/128 (49%), Gaps = 4/128 (3%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ I+DR T+ +K + ++ G+ +P + D +KV P VA T + R L Sbjct: 69 LKEIEDRFKLTLQEHQKKINEIKLGKSNPKIFDSLKVSIAKDLQPFPSVAQTTS-KGRNL 127 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVE---GQVLRIPVPETTEERRLALVKVAHAYAE 123 +V+V+D +V V I S L LNP V+ Q+L++P+ T E + +K E Sbjct: 128 LVTVFDPSLVKYVVSSILSSGLNLNPEVDPKNPQLLKVPLTAPTAETKKETLKALKNNLE 187 Query: 124 KSKISVRN 131 + S+ N Sbjct: 188 HYRHSITN 195 >gi|146416959|ref|XP_001484449.1| hypothetical protein PGUG_03830 [Meyerozyma guilliermondii ATCC 6260] Length = 255 Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 9/137 (6%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 ID + K +M + I K + GR SP + D + V+ P VA T ++ R Sbjct: 71 IDFDDAKRKMNEVIEKFSKLANEAKLGRTSPLIFDHLSVDTEFGPQPFTSVAQ-TSIKGR 129 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQ---VLRIPVPETTEERRLALVKVAHAY 121 +++V+D S+ + SNL +NP V+ L++P+P T E + K Sbjct: 130 NFLITVFDTANSQSIINAVLGSNLNMNPQVDPSNKLALKVPLPPLTVESKKESAKQLKGV 189 Query: 122 AEK-----SKISVRNIR 133 EK K+++ +IR Sbjct: 190 YEKFKNGSGKLTLASIR 206 >gi|156053600|ref|XP_001592726.1| predicted protein [Sclerotinia sclerotiorum 1980] gi|154703428|gb|EDO03167.1| predicted protein [Sclerotinia sclerotiorum 1980 UF-70] Length = 288 Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 51/192 (26%), Positives = 88/192 (45%), Gaps = 21/192 (10%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKV----EAYGSHVPLNQVA 56 N D ++ + ++ LK D+ LRTG R +P +L+ ++V +A S L +A Sbjct: 96 NDPFDFSTLQTGIDKSLEKLKNDLGKLRTGGRFNPEVLEGLRVKLGKDAKESFR-LGDLA 154 Query: 57 NVTVLEPRMLVVSVWDKEMVASVERGIHES-NLGLNPIVEGQ---VLRIPVPETTEERRL 112 V R +VV V +K+ + + I S L L P+ + Q L IP+P T+E R Sbjct: 155 QVLPKGGRSVVVLVGEKDHIKPILSTIQSSPTLSLQPVPDPQNPHALNIPIPPPTKESRD 214 Query: 113 ALVKVAHAYAEKSKISVRNIRRDGMDHLKK-----------SRKSGKASEDMVASLENDI 161 A ++ A E + VRN R L+ S+K+ K E +V ++ Sbjct: 215 AALQAASKAGELASNGVRNARGAMQKKLRAMEVKKTVRPDDSKKAHKEMEKVVEKGNGEV 274 Query: 162 QKITDSTIKNID 173 +K+ ++ K ++ Sbjct: 275 KKLVEAARKGME 286 >gi|164661787|ref|XP_001732016.1| hypothetical protein MGL_1284 [Malassezia globosa CBS 7966] gi|159105917|gb|EDP44802.1| hypothetical protein MGL_1284 [Malassezia globosa CBS 7966] Length = 262 Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 70/144 (48%), Gaps = 8/144 (5%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTL--RTGRVSPSMLDLVKVEAYGS--HVPLNQVANVTV 60 +DL M ++ + + TL GRV ++LD V+V +PL+ A V V Sbjct: 76 LDLNGTSSEMESVVARCSEHVRTLVGSLGRVDAALLDDVRVSTGKGIKPIPLHNFATVGV 135 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIV---EGQVLRIPVPETTEERRLALVKV 117 + +LV++ ++ E + +E+ I+ L P + E V+ + VP+ T E R L++ Sbjct: 136 RD-NVLVITAYEPETLKHIEKAIYAVGKDLAPQIMHDEEGVMIVHVPKPTGETRKILLQK 194 Query: 118 AHAYAEKSKISVRNIRRDGMDHLK 141 + +K +RN+R+ H+K Sbjct: 195 CIKECDHAKTMLRNVRQSAQKHMK 218 >gi|153820415|ref|ZP_01973082.1| ribosome recycling factor [Vibrio cholerae NCTC 8457] gi|126509043|gb|EAZ71637.1| ribosome recycling factor [Vibrio cholerae NCTC 8457] Length = 60 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 35/59 (59%) Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 + VRNIRRD + LK K + SED + +IQK+TD+ +K ID K+KE+M Sbjct: 1 MCVRNIRRDANNDLKALLKDKEISEDDERRAQEEIQKLTDAAVKKIDDVLAAKEKELME 59 >gi|124801048|ref|XP_001349596.1| apicoplast ribosomal releasing factor precursor, putative [Plasmodium falciparum 3D7] gi|3845171|gb|AAC71867.1| apicoplast ribosomal releasing factor precursor, putative [Plasmodium falciparum 3D7] Length = 498 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 43/179 (24%), Positives = 78/179 (43%), Gaps = 4/179 (2%) Query: 3 QVIDLQNI-KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 + DL I ++M FLKK+ VS M + KV+ + + ++ Sbjct: 323 HIKDLHKICSEKMNKVYEFLKKESYRFNLNNVSNDMFENEKVKINERIYTVKHICHIKKK 382 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 E + ++ +D V + + + L V+ + L +P +E + + Sbjct: 383 E-NLFTITPYDPYFVNFLYQHFIKEFDELKFYVKDKSLYAIIPPISENLKNEIKMKIKRK 441 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E SK+++R +R+ MD L+K + K +D+ +N IQ I D T KNI+ F + K Sbjct: 442 IEDSKVTLRTVRKQMMDKLEKFK--NKIGKDIYFKQKNYIQSIHDQTKKNIEKLFADTK 498 >gi|259486711|tpe|CBF84788.1| TPA: ribosome recycling factor, putative (AFU_orthologue; AFUA_8G03940) [Aspergillus nidulans FGSC A4] Length = 255 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 90/187 (48%), Gaps = 11/187 (5%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKVE-AYGSH--VPLNQVANVTVL 61 DL ++ + +S LK ++ LRTG R+ P ++ ++V+ + G+ L +A V Sbjct: 68 DLSQLELGIATAVSRLKDELTKLRTGGRLCPETIESLRVQLSKGTKETARLGDLAQVVPK 127 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQ---VLRIPVPETTEERRLALVKVA 118 RM+ V V ++ + + I SNL L P + L IP+P T+E R V A Sbjct: 128 GGRMVAVLVSEESYMKPISSAILASNLSLTPQQDPHNALQLNIPIPPPTKESRDQTVLAA 187 Query: 119 HAYAEKSKISVRNIRRDGMDH--LKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFF 176 A E++ +VR R G+ H L++ K A D ++ ++K+T+ K + F Sbjct: 188 KAAMERAASNVRETR--GIVHKRLQEMIKKKIARPDDARKAQDKMEKLTEKGQKEVKDLF 245 Query: 177 EEKKKEI 183 E KK + Sbjct: 246 EVAKKAM 252 >gi|255718059|ref|XP_002555310.1| KLTH0G06270p [Lachancea thermotolerans] gi|238936694|emb|CAR24873.1| KLTH0G06270p [Lachancea thermotolerans] Length = 239 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 10/156 (6%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K + T+ KK + +R G SPS+ D + V S VA ++ L+V+V Sbjct: 63 KTQFSVTLDLHKKKLSEIRAGSASPSIFDKLSVGKENSK--FTDVATTSMKGKNSLIVTV 120 Query: 71 WDKEMVASVERGIHESNLGLNP---IVEGQVLRIPV-PETTEERRLALVKVAHAYAE--- 123 +D + SV I + L LNP Q L+I + P TTE R+ ++ + E Sbjct: 121 FDPKDTKSVVSSILAAGLNLNPEKIPNNDQQLKISLPPPTTETRKQTCKQLKEVFEEFKN 180 Query: 124 -KSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLE 158 +K S+ +IR D + LK K + + ++ L+ Sbjct: 181 SANKNSLGHIRGDILKQLKNIDKKNDSVKKVIQDLD 216 >gi|121719597|ref|XP_001276497.1| ribosome recycling factor, putative [Aspergillus clavatus NRRL 1] gi|119404709|gb|EAW15071.1| ribosome recycling factor, putative [Aspergillus clavatus NRRL 1] Length = 251 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 47/185 (25%), Positives = 86/185 (46%), Gaps = 7/185 (3%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLR-TGRVSPSMLDLVKVE-AYGSH--VPLNQVANVTVL 61 DL +++ + +S L+ D+ LR GR + L+ ++V + GS + L +A V Sbjct: 64 DLSSLQAGISTVVSRLRDDLSKLRIGGRFNTESLENLRVCLSKGSKDTLRLGDLAQVVPK 123 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQ---VLRIPVPETTEERRLALVKVA 118 R + + ++E + V I SNL L P + L I +P T+E R V +A Sbjct: 124 GGRTVTILASEEEHIKPVTSAIVSSNLSLTPQPDAHNALQLNILIPPPTKELRDQTVAIA 183 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 A +K+ ++R R L+ +K A D V ++ ++K+T+ K + F+ Sbjct: 184 KAAMDKAAGAIRESRSVAHKRLQDMQKKKIARPDDVRKAQDQMEKLTERGQKEVKELFDT 243 Query: 179 KKKEI 183 +K + Sbjct: 244 TRKAL 248 >gi|82593721|ref|XP_725122.1| ribosome releasing factor [Plasmodium yoelii yoelii str. 17XNL] gi|23480010|gb|EAA16687.1| ribosome releasing factor-related [Plasmodium yoelii yoelii] Length = 413 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 35/167 (20%), Positives = 76/167 (45%), Gaps = 3/167 (1%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 ++M +KK+ VS +M + +V+ +N + ++ E + +++ + Sbjct: 248 EKMNKIYDHIKKESYRFNLNNVSSAMFESERVKINEQIYTINHICHIKKKE-NLFIITPY 306 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 D V + + L ++ + + + +P +E + + E+SKI++RN Sbjct: 307 DPYFVNFIYIHFTKEYNELKFYIKDKSVYVVIPPLSEHLKNEIKNKIKDKIEESKITLRN 366 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 +R+ M+ L+K + +D+ +N IQ + D T KNI+ F E Sbjct: 367 VRKKFMNKLEKIK--NYIGKDIYFKQKNHIQSLHDQTKKNIEKIFNE 411 >gi|325117497|emb|CBZ53049.1| conserved hypothetical protein [Neospora caninum Liverpool] Length = 344 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 69/119 (57%), Gaps = 9/119 (7%) Query: 74 EMVASVERGIHESNLGLNPIVEGQ---------VLRIPVPETTEERRLALVKVAHAYAEK 124 ++ A++E+ + ++LGL+ + + + + P T+ERRL LV A A AE+ Sbjct: 223 QLFAAIEKALSTASLGLSVRTKNEDEKGAKRQREMLVDFPALTQERRLQLVNEARAEAEE 282 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 ++ +R +RR+ ++ L+ +K+G ED ++ L++ +Q+ T+ I ID+ K+K++ Sbjct: 283 GRVVLRRLRRELLEELRGVKKAGGIGEDRISKLQDRVQQATEKKIAEIDTTLSSKEKQL 341 >gi|327352864|gb|EGE81721.1| ribosome recycling factor [Ajellomyces dermatitidis ATCC 18188] Length = 304 Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 68/140 (48%), Gaps = 11/140 (7%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKV-----EAYGSH--VPLNQVA 56 +++ + + LK D+ LR G R +P ++ ++V + GS V L ++A Sbjct: 113 FGFSQLENDIAGAVQRLKDDISKLRAGGRFNPEAIETLRVAVSKGDGKGSKETVKLGELA 172 Query: 57 NVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQ---VLRIPVPETTEERRLA 113 V RML + V ++E + + + S+L LNP + L +P+P T+E R Sbjct: 173 QVIPKGGRMLTILVGEEEYIKPITSSLLSSSLSLNPQPDPHNSLQLNVPIPPPTKESRDQ 232 Query: 114 LVKVAHAYAEKSKISVRNIR 133 VK A A +K+ +VRN R Sbjct: 233 SVKDAKAAMDKASTAVRNAR 252 >gi|167463764|ref|ZP_02328853.1| ribosome recycling factor [Paenibacillus larvae subsp. larvae BRL-230010] Length = 62 Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 1/60 (1%) Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +K+++RNIRRD + +KK K+ + SED ++DIQK TD I +D K+KEIM Sbjct: 2 AKVAIRNIRRDSNESIKKMEKT-EISEDESRRHQDDIQKSTDKYIAEVDKVLAAKEKEIM 60 >gi|296421645|ref|XP_002840375.1| hypothetical protein [Tuber melanosporum Mel28] gi|295636590|emb|CAZ84566.1| unnamed protein product [Tuber melanosporum] Length = 258 Score = 43.9 bits (102), Expect = 0.009, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 70/137 (51%), Gaps = 11/137 (8%) Query: 18 ISFLKKDMMTLRTG-RVSPSMLDLVKV---EAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 I L+ D+ LR G R P+ L+ ++V + G+ L +A+V + + R VVSV+D Sbjct: 87 IDKLRTDIAKLRAGGRNDPATLENIQVVLDRSTGASASLRDIAHV-LPKGRSFVVSVYDA 145 Query: 74 EMVASVERGIHESNLGLNPIVEG---QVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 V V I +++L + P+ + Q++ +P+P T+E R + ++ E+ +R Sbjct: 146 ANVKYVIAAIQKADLNVQPMPDPKNTQLINVPLPPPTKETRSEIARMVGKAGERVMNYLR 205 Query: 131 NIRRDG---MDHLKKSR 144 R+D + LKK R Sbjct: 206 LARQDSHKLIKGLKKER 222 >gi|205373431|ref|ZP_03226235.1| hypothetical protein Bcoam_09080 [Bacillus coahuilensis m4-4] Length = 62 Score = 43.9 bits (102), Expect = 0.009, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 2/53 (3%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQ 54 N VI+ K+RM I+ +++ ++R GR + S+LD + VE YG+ P+NQ Sbjct: 3 NSVINTG--KERMDKAIAAYSRELASIRAGRANASLLDGLSVEYYGAPTPINQ 53 >gi|68072191|ref|XP_678009.1| ribosome releasing factor [Plasmodium berghei strain ANKA] gi|56498332|emb|CAI00267.1| ribosome releasing factor, putative [Plasmodium berghei] Length = 178 Score = 43.5 bits (101), Expect = 0.012, Method: Compositional matrix adjust. Identities = 35/167 (20%), Positives = 74/167 (44%), Gaps = 3/167 (1%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 ++M +KK+ VS +M + KV+ +N + ++ E + +++ + Sbjct: 13 EKMNKVYEHIKKESYRFNLNNVSSAMFENEKVKINERIYTINHICHIKKKE-NLFIITPY 71 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 D V + + L ++ + + +P +E + + E+SKI++RN Sbjct: 72 DPYFVNFIYLHFTKEYSELKFYIKDKSICAVIPPLSEHLKNEIKNKIKDKIEESKITLRN 131 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 +R+ M+ L+K + +D+ +N IQ + D T K I+ F E Sbjct: 132 VRKKFMNKLEKIK--NYIGKDIYFKQKNHIQSLHDQTKKKIEKIFNE 176 >gi|50287853|ref|XP_446356.1| hypothetical protein [Candida glabrata CBS 138] gi|60390409|sp|Q6FTT8|RRF1_CANGA RecName: Full=Ribosome-recycling factor, mitochondrial; Short=RRF; AltName: Full=Ribosome-releasing factor, mitochondrial; Flags: Precursor gi|49525663|emb|CAG59280.1| unnamed protein product [Candida glabrata] Length = 233 Score = 43.1 bits (100), Expect = 0.017, Method: Compositional matrix adjust. Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 11/166 (6%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N I + + + ++ K++ R G V+ ++ D + ++ + ++A+ T+ Sbjct: 47 VNPSIYVDELVSKFDKSLELYSKELTDKRKGSVNANIFDNLSLK---NGALFKEMASTTL 103 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNP---IVEGQVLRIPVPETTEERRLALVKV 117 L+V+V+D V ++ I S LNP Q L+IP+P T E R L K Sbjct: 104 KGKGSLLVTVFDPNEVKNIVSAILASGQNLNPERVPTNNQQLKIPLPPPTAESRQNLCKE 163 Query: 118 AHAYAEK-----SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLE 158 EK SK S+ +IR + M LK +K ++ + ++ ++E Sbjct: 164 LKTVFEKYKQSPSKNSLGHIRNEVMKKLKSLQKKDESVKKIIQNVE 209 >gi|268560952|ref|XP_002646329.1| Hypothetical protein CBG12038 [Caenorhabditis briggsae] gi|187029873|emb|CAP31083.1| hypothetical protein CBG_12038 [Caenorhabditis briggsae AF16] Length = 198 Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 1/66 (1%) Query: 47 GSHVPLNQVANVTVLEPRMLVVSVWDK-EMVASVERGIHESNLGLNPIVEGQVLRIPVPE 105 G PL+ VA VT+ P +++++ D + + + I +S L + P EG VL + VP Sbjct: 58 GKEKPLSLVARVTLKSPLIVMLNFQDNPSAIKAAKLAIQKSTLNVTPQQEGAVLYVNVPP 117 Query: 106 TTEERR 111 T++ERR Sbjct: 118 TSKERR 123 >gi|213407242|ref|XP_002174392.1| mitochondrial translation termination factor [Schizosaccharomyces japonicus yFS275] gi|212002439|gb|EEB08099.1| mitochondrial translation termination factor [Schizosaccharomyces japonicus yFS275] Length = 241 Score = 42.4 bits (98), Expect = 0.027, Method: Compositional matrix adjust. Identities = 37/157 (23%), Positives = 76/157 (48%), Gaps = 5/157 (3%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 LQ I +++ T+ + D ++ M+ K E H+ L +A ++ + ++L Sbjct: 59 LQGIPEKLTSTLKVMATDSQQGNVNQLEHVMVSKPKQE---EHL-LKDIAAISRVSGKVL 114 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQV-LRIPVPETTEERRLALVKVAHAYAEKS 125 + + + V + + I SNL + P+++ V +++ + ETT E AL K +++ Sbjct: 115 NIKPYSPQDVKYIMKAITSSNLRMQPVLKDSVTIQVRLQETTLETLKALAKQIKEQEDRT 174 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQ 162 K+++R +R L + + S SED +E D+Q Sbjct: 175 KVAIRLVRTSFQKKLARRKLSKVWSEDECRKVEKDMQ 211 >gi|296806365|ref|XP_002843992.1| ribosomal recycling factor [Arthroderma otae CBS 113480] gi|238845294|gb|EEQ34956.1| ribosomal recycling factor [Arthroderma otae CBS 113480] Length = 250 Score = 42.4 bits (98), Expect = 0.028, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 66/147 (44%), Gaps = 21/147 (14%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKVEAYGSH-------------- 49 D + D + D ++ LK+D+ LR G RV+P ++ ++V + Sbjct: 98 FDFAPLHDSIKDAVTRLKEDLAKLRGGGRVTPEAIENIRVSLHKVGGSDGGKGKKAASSG 157 Query: 50 ---VPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQ---VLRIPV 103 V L +VA+V R + + V ++ V +V I S+L LNP + L + + Sbjct: 158 KETVRLGEVASVIPKGGRTVSILVGEEHDVKAVMSAITASDLSLNPQGDPHNPLQLNVAI 217 Query: 104 PETTEERRLALVKVAHAYAEKSKISVR 130 P T+E R VK A A EK+ + R Sbjct: 218 PPPTKESREQTVKDAKAAMEKASNATR 244 >gi|212541408|ref|XP_002150859.1| ribosome recycling factor, putative [Penicillium marneffei ATCC 18224] gi|210068158|gb|EEA22250.1| ribosome recycling factor, putative [Penicillium marneffei ATCC 18224] Length = 293 Score = 42.4 bits (98), Expect = 0.031, Method: Compositional matrix adjust. Identities = 46/186 (24%), Positives = 93/186 (50%), Gaps = 9/186 (4%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTG---RVSPSMLDLVKVE-AYGSH--VPLNQVANV 58 D ++ + D ++ K+D+ LR+G R++P +++ ++V GS+ V L++VA V Sbjct: 103 FDFSQLQTGISDALTRFKEDLQKLRSGGGGRLNPEVIEQLRVHIVKGSNETVRLSEVAQV 162 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQ---VLRIPVPETTEERRLALV 115 R + + + +++++ V I S+L L P + L +P+P T+E R V Sbjct: 163 VPKGGRAVAIIIGEEDLIKPVNSAIISSSLSLTPQPDAHNPLQLNVPIPPPTKESRDQAV 222 Query: 116 KVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSF 175 K A +K+ +VR+ R L+ +K +A D + + ++K+ + K++ Sbjct: 223 KAAKGAMDKAASAVRSARAAIHKKLQDMQKRKEARPDDIRKAHDQMEKLVEKAQKDVKDT 282 Query: 176 FEEKKK 181 FE +K Sbjct: 283 FESARK 288 >gi|295659841|ref|XP_002790478.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01] gi|226281655|gb|EEH37221.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01] Length = 303 Score = 42.0 bits (97), Expect = 0.034, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 11/131 (8%) Query: 14 MGDTISFLKKDMMTLRTG-RVSPSMLDLVKV-----EAYGSH--VPLNQVANVTVLEPRM 65 + + + LK D+ LR G R +P ++ ++V + GS V L ++A V RM Sbjct: 121 IAEAVRKLKDDISKLRAGGRFNPGTIESLRVAVTKGDGKGSKETVRLGELAQVIPKGGRM 180 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQ---VLRIPVPETTEERRLALVKVAHAYA 122 L + V + E V + + S+L LNP + L +P+P T+E R VK A A Sbjct: 181 LTLLVGEDEYVKPIASALLSSDLSLNPQRDAHNSLQLNVPIPPPTKESREQSVKDAKAAM 240 Query: 123 EKSKISVRNIR 133 E++ +VRN R Sbjct: 241 ERASNAVRNAR 251 >gi|50543588|ref|XP_499960.1| YALI0A10813p [Yarrowia lipolytica] gi|60390378|sp|Q6CHA2|RRF1_YARLI RecName: Full=Ribosome-recycling factor, mitochondrial; Short=RRF; AltName: Full=Ribosome-releasing factor, mitochondrial; Flags: Precursor gi|49645825|emb|CAG83889.1| YALI0A10813p [Yarrowia lipolytica] Length = 264 Score = 42.0 bits (97), Expect = 0.035, Method: Compositional matrix adjust. Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 4/112 (3%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHV-PLNQVANVTVLE 62 +I+ +D +++ ++ G SP +++ ++V+ V + +A+V + Sbjct: 72 MIEWNKFEDLSAKSVAAFAAKAKEIKAGNNSPDLINNIEVKISKDEVYQIKDIASVALKG 131 Query: 63 PRMLVVSVWDKEMVASVERGIHESNLGLNPIVEG---QVLRIPVPETTEERR 111 R L +SV+D V I S+L +NP + Q+L IP+P + E R Sbjct: 132 GRTLSISVYDPSHTKQVTASILASDLNMNPQPQANSPQILNIPLPPPSAESR 183 >gi|207111159|ref|ZP_03245321.1| ribosome recycling factor [Helicobacter pylori HPKX_438_CA4C1] Length = 63 Score = 41.6 bits (96), Expect = 0.045, Method: Compositional matrix adjust. Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 1/49 (2%) Query: 104 PETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASED 152 P TTE+R+L + K A A EK+K++VRN R+D + +KK K + SED Sbjct: 7 PMTTEQRKL-IAKDAKAMGEKAKVAVRNTRQDANNKVKKLEKDKEISED 54 >gi|149239126|ref|XP_001525439.1| hypothetical protein LELG_03367 [Lodderomyces elongisporus NRRL YB-4239] gi|146450932|gb|EDK45188.1| hypothetical protein LELG_03367 [Lodderomyces elongisporus NRRL YB-4239] Length = 271 Score = 41.2 bits (95), Expect = 0.059, Method: Compositional matrix adjust. Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 8/134 (5%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLD----LVKVEAYGSHVPLNQVANVT 59 ID ++ ++R + +K ++ GR++P + D VK VP VA +T Sbjct: 79 TIDFKDAEERFQHVLEKFEKAANEIKLGRLNPRVFDNLMVAVKDGNKSEEVPFTSVA-LT 137 Query: 60 VLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQV---LRIPVPETTEERRLALVK 116 ++ R +V+++D A++ I S L ++ + LRIP+P T+E + +K Sbjct: 138 SMKGRNFIVTMFDPLQSAAIINAIIGSGLNMSGTTDPNNKFNLRIPMPPVTQETKQNDLK 197 Query: 117 VAHAYAEKSKISVR 130 EK+K R Sbjct: 198 QLKELYEKTKNGAR 211 >gi|307568248|pdb|3LHP|S Chain S, Crystal Structure Of Hiv Epitope-Scaffold 4e10_d0_1isea_004_n 4e10 Fv Complex gi|307568249|pdb|3LHP|T Chain T, Crystal Structure Of Hiv Epitope-Scaffold 4e10_d0_1isea_004_n 4e10 Fv Complex Length = 123 Score = 40.8 bits (94), Expect = 0.076, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 8/72 (11%) Query: 107 TEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASE----DMVASLENDIQ 162 TEER +K+ AE+++++VRN+ RD D K+ GK E D+ SL D+Q Sbjct: 44 TEERIKDWLKIVRGEAEQARVAVRNVGRDAND---KAAALGKDKEINWFDISQSLW-DVQ 99 Query: 163 KITDSTIKNIDS 174 K+TD+ IK I++ Sbjct: 100 KLTDAAIKKIEA 111 >gi|256270599|gb|EEU05773.1| Rrf1p [Saccharomyces cerevisiae JAY291] Length = 230 Score = 40.8 bits (94), Expect = 0.081, Method: Compositional matrix adjust. Identities = 41/186 (22%), Positives = 86/186 (46%), Gaps = 16/186 (8%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ + + T+ K+ M ++ G +P + + + + ++ +A ++ L Sbjct: 52 LKKAETQFKKTLEVQKQKMNEIKQGNFNPKVFNSL---VFKNNRKFTDIATTSLKGKNAL 108 Query: 67 VVSVWDKEMVASVERGIHESNLGLNP--IVEGQV-LRIPVPETTEERRLALVK----VAH 119 +++V+D + V +V G+ +NL L P + + L++ +P T E RL + K V Sbjct: 109 LITVFDPKDVKTVISGVLAANLNLTPERVPNNDLQLKVSLPPPTTESRLKVAKDLKRVFE 168 Query: 120 AYAEKS-KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 Y + S K S+ IR + K +K +D V E D++K+ + + F++ Sbjct: 169 EYKQSSLKDSLGTIRGSILKEFKSFKK-----DDAVRKAERDLEKLHKDYVNKLHDQFQK 223 Query: 179 KKKEIM 184 +K I+ Sbjct: 224 VEKSIL 229 >gi|6321827|ref|NP_011903.1| Rrf1p [Saccharomyces cerevisiae S288c] gi|731650|sp|P38771|RRF1_YEAST RecName: Full=Ribosome-recycling factor, mitochondrial; Short=RRF; AltName: Full=Ribosome-releasing factor, mitochondrial; Flags: Precursor gi|488171|gb|AAB68906.1| Yhr038wp [Saccharomyces cerevisiae] gi|3327238|dbj|BAA31687.1| FIL1 [Saccharomyces cerevisiae] gi|285809942|tpg|DAA06729.1| TPA: Rrf1p [Saccharomyces cerevisiae S288c] Length = 230 Score = 40.8 bits (94), Expect = 0.096, Method: Compositional matrix adjust. Identities = 41/186 (22%), Positives = 86/186 (46%), Gaps = 16/186 (8%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ + + T+ K+ M ++ G +P + + + + ++ +A ++ L Sbjct: 52 LKKAETQFKKTLEIQKQKMNEIKQGNFNPKVFNSL---VFKNNRKFTDIATTSLKGKNAL 108 Query: 67 VVSVWDKEMVASVERGIHESNLGLNP--IVEGQV-LRIPVPETTEERRLALVK----VAH 119 +++V+D + V +V G+ +NL L P + + L++ +P T E RL + K V Sbjct: 109 LITVFDPKDVKTVISGVLAANLNLTPERVPNNDLQLKVSLPPPTTESRLKVAKDLKRVFE 168 Query: 120 AYAEKS-KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 Y + S K S+ IR + K +K +D V E D++K+ + + F++ Sbjct: 169 EYKQSSLKDSLGTIRGSILKEFKSFKK-----DDAVRKAERDLEKLHKDYVNKLHDQFQK 223 Query: 179 KKKEIM 184 +K I+ Sbjct: 224 VEKSIV 229 >gi|323304735|gb|EGA58496.1| Rrf1p [Saccharomyces cerevisiae FostersB] Length = 182 Score = 40.8 bits (94), Expect = 0.097, Method: Compositional matrix adjust. Identities = 41/186 (22%), Positives = 86/186 (46%), Gaps = 16/186 (8%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ + + T+ K+ M ++ G +P + + + + ++ +A ++ L Sbjct: 4 LKKAETQFKKTLEVQKQKMNEIKQGNFNPKVFNSL---VFKNNRKFTDIATTSLKGKNAL 60 Query: 67 VVSVWDKEMVASVERGIHESNLGLNP--IVEGQV-LRIPVPETTEERRLALVK----VAH 119 +++V+D + V +V G+ +NL L P + + L++ +P T E RL + K V Sbjct: 61 LITVFDPKDVKTVISGVLAANLNLTPERVPNNDLQLKVSLPPPTTESRLKVAKDLKRVFE 120 Query: 120 AYAEKS-KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 Y + S K S+ IR + K +K +D V E D++K+ + + F++ Sbjct: 121 EYKQSSLKDSLGTIRGSILKEFKSFKK-----DDAVRKAERDLEKLHKDYVNKLHDQFQK 175 Query: 179 KKKEIM 184 +K I+ Sbjct: 176 VEKSIV 181 >gi|23335168|ref|ZP_00120406.1| COG0233: Ribosome recycling factor [Bifidobacterium longum DJO10A] Length = 58 Score = 40.4 bits (93), Expect = 0.11, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 32/57 (56%) Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +RNIRR + + K+ K G+ ED L D+ K+T S ID+ E K+KEIM Sbjct: 1 MRNIRRKTKETIDKAVKDGEMGEDEGDRLLKDLDKVTKSVTDEIDTLLETKQKEIME 57 >gi|151943982|gb|EDN62275.1| mitochondrial ribosome recycling factor [Saccharomyces cerevisiae YJM789] gi|190405822|gb|EDV09089.1| mitochondrial ribosome recycling factor [Saccharomyces cerevisiae RM11-1a] Length = 230 Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust. Identities = 41/186 (22%), Positives = 86/186 (46%), Gaps = 16/186 (8%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ + + T+ K+ M ++ G +P + + + + ++ +A ++ L Sbjct: 52 LKKAETQFKKTLEVQKQKMNEIKQGNFNPKVFNSL---VFKNNRKFTDIATTSLKGKNAL 108 Query: 67 VVSVWDKEMVASVERGIHESNLGLNP--IVEGQV-LRIPVPETTEERRLALVK----VAH 119 +++V+D + V +V G+ +NL L P + + L++ +P T E RL + K V Sbjct: 109 LITVFDPKDVKTVISGVLAANLNLTPERVPNNDLQLKVSLPPPTTESRLKVAKDLKRVFE 168 Query: 120 AYAEKS-KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 Y + S K S+ IR + K +K +D V E D++K+ + + F++ Sbjct: 169 EYKQSSLKDSLGTIRGSILKEFKSFKK-----DDAVRKAERDLEKLHKDYVNKLHDQFQK 223 Query: 179 KKKEIM 184 +K I+ Sbjct: 224 VEKSIV 229 >gi|207344733|gb|EDZ71776.1| YHR038Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi|259147070|emb|CAY80324.1| Rrf1p [Saccharomyces cerevisiae EC1118] Length = 231 Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust. Identities = 41/186 (22%), Positives = 86/186 (46%), Gaps = 16/186 (8%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ + + T+ K+ M ++ G +P + + + + ++ +A ++ L Sbjct: 53 LKKAETQFKKTLEVQKQKMNEIKQGNFNPKVFNSL---VFKNNRKFTDIATTSLKGKNAL 109 Query: 67 VVSVWDKEMVASVERGIHESNLGLNP--IVEGQV-LRIPVPETTEERRLALVK----VAH 119 +++V+D + V +V G+ +NL L P + + L++ +P T E RL + K V Sbjct: 110 LITVFDPKDVKTVISGVLAANLNLTPERVPNNDLQLKVSLPPPTTESRLKVAKDLKRVFE 169 Query: 120 AYAEKS-KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 Y + S K S+ IR + K +K +D V E D++K+ + + F++ Sbjct: 170 EYKQSSLKDSLGTIRGSILKEFKSFKK-----DDAVRKAERDLEKLHKDYVNKLHDQFQK 224 Query: 179 KKKEIM 184 +K I+ Sbjct: 225 VEKSIV 230 >gi|27461183|gb|AAL79355.1| ribosome recycling factor [Phytoplasma sp. DIV] Length = 94 Score = 40.0 bits (92), Expect = 0.14, Method: Compositional matrix adjust. Identities = 20/83 (24%), Positives = 44/83 (53%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++ +M + K+ +RTG +P++LD + V YG+ L +A+++V E L Sbjct: 9 LASLETKMTQAQEVMLKNFCDIRTGTANPNILDKITVNYYGAPXFLKTLASISVSEGNQL 68 Query: 67 VVSVWDKEMVASVERGIHESNLG 89 + +D ++ ++++ LG Sbjct: 69 NIKPYDSXLIPNIKKVGXAPKLG 91 >gi|225679501|gb|EEH17785.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03] Length = 303 Score = 39.7 bits (91), Expect = 0.19, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 65/131 (49%), Gaps = 11/131 (8%) Query: 14 MGDTISFLKKDMMTLRTG-RVSPSMLDLVKV-----EAYGSH--VPLNQVANVTVLEPRM 65 + + + LK D+ LR G RV+P ++ ++V + GS V L ++ V RM Sbjct: 121 IAEAVRKLKDDISKLRAGGRVNPETIESLRVAVTKGDGKGSKETVRLGELVQVIPKGGRM 180 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQ---VLRIPVPETTEERRLALVKVAHAYA 122 L + V + E V + + SNL LNP + L +P+P T+E R VK A A Sbjct: 181 LTLLVGEDEYVKPITSALLSSNLSLNPQTDAHNSLQLNVPIPPPTKESREQSVKEAKAAM 240 Query: 123 EKSKISVRNIR 133 E++ +VRN R Sbjct: 241 ERASNAVRNAR 251 >gi|226291233|gb|EEH46661.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18] Length = 303 Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 65/131 (49%), Gaps = 11/131 (8%) Query: 14 MGDTISFLKKDMMTLRTG-RVSPSMLDLVKV-----EAYGSH--VPLNQVANVTVLEPRM 65 + + + LK D+ LR G RV+P ++ ++V + GS V L ++ V RM Sbjct: 121 IAEAVRKLKDDISKLRAGGRVNPETIESLRVAVTKGDGKGSKETVRLGELVQVIPKGGRM 180 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQ---VLRIPVPETTEERRLALVKVAHAYA 122 L + V + E V + + SNL LNP + L +P+P T+E R VK A A Sbjct: 181 LTLLVGEDEYVKPITSALLSSNLSLNPQTDAHNSLQLNVPIPPPTKESREQSVKDAKAAM 240 Query: 123 EKSKISVRNIR 133 E++ +VRN R Sbjct: 241 ERASNAVRNAR 251 >gi|218672183|ref|ZP_03521852.1| ribosome recycling factor [Rhizobium etli GR56] Length = 41 Score = 39.3 bits (90), Expect = 0.26, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 28/41 (68%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLV 41 M++ ID++ +K RM +S K D+ +LRTGR S ++LD V Sbjct: 1 MSEGIDIKELKRRMDGAVSAFKSDIASLRTGRASANILDPV 41 >gi|316969816|gb|EFV53856.1| putative ribosome recycling factor [Trichinella spiralis] Length = 267 Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust. Identities = 31/137 (22%), Positives = 64/137 (46%), Gaps = 3/137 (2%) Query: 50 VPLNQVANVTVLEPRMLVVSVWDK-EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTE 108 VPLN +A VT+ P + ++++ + V +V + I ES L + + L +P+P ++ Sbjct: 130 VPLNHIAQVTLKNPHLAIINLSSTPQAVKAVMKAIAESGLDVGVQQQNAFLYVPLPRPSK 189 Query: 109 ERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDST 168 +R L K A + +R I R +K +K +++ SL ++ + Sbjct: 190 AKREQLAKNAKILYNRCHDQLREIMR--YHEVKLRKKEHSLQKEIYNSLIFHLEDLVRIY 247 Query: 169 IKNIDSFFEEKKKEIMH 185 + + + K++E+M Sbjct: 248 AQKAEKLMKAKQEELMQ 264 >gi|323348363|gb|EGA82611.1| Rrf1p [Saccharomyces cerevisiae Lalvin QA23] Length = 161 Score = 38.9 bits (89), Expect = 0.29, Method: Compositional matrix adjust. Identities = 38/168 (22%), Positives = 78/168 (46%), Gaps = 16/168 (9%) Query: 25 MMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIH 84 M ++ G +P + + + + ++ +A ++ L+++V+D + V +V G+ Sbjct: 1 MNEIKQGNFNPKVFNXL---VFKNNRKFTDIATTSLKGKNALLITVFDPKDVKTVISGVL 57 Query: 85 ESNLGLNP--IVEGQV-LRIPVPETTEERRLALVK----VAHAYAEKS-KISVRNIRRDG 136 +NL L P + + L++ +P T E RL + K V Y + S K S+ IR Sbjct: 58 AANLNLTPERVPNNDLQLKVSLPPPTTESRLKVAKDLKRVFEEYKQSSLKDSLGTIRGSI 117 Query: 137 MDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 + K +K +D V E D++K+ + + F++ +K I+ Sbjct: 118 LKEFKSFKK-----DDAVRKAERDLEKLHKDYVNKLHDQFQKVEKSIV 160 >gi|156844975|ref|XP_001645548.1| hypothetical protein Kpol_1004p67 [Vanderwaltozyma polyspora DSM 70294] gi|156116212|gb|EDO17690.1| hypothetical protein Kpol_1004p67 [Vanderwaltozyma polyspora DSM 70294] Length = 238 Score = 38.9 bits (89), Expect = 0.30, Method: Compositional matrix adjust. Identities = 43/178 (24%), Positives = 86/178 (48%), Gaps = 17/178 (9%) Query: 16 DTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEM 75 +++ K + ++ GR +P + D +K+ S VA+ ++ L+++V+D + Sbjct: 68 ESLELHNKKLNEIKQGRANPKIFDGLKLHNGAS---FKDVAHTSLRGKNSLLITVYDPKD 124 Query: 76 VASVERGIHESNLGLNPIVE---GQVLRIPVPE-TTEERRLALVK----VAHAYAEKS-K 126 +V I + L LNP + Q+L++ +P TTE R+ LVK V ++ S + Sbjct: 125 AKNVISAIMGAGLNLNPEKDPNNSQLLKVLLPPPTTES-RMNLVKELKIVFESFKSSSMR 183 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 S+ ++R D + +KK K +D V D++K+ K + ++ +K +M Sbjct: 184 NSLASVRADILKEMKKLDK----KDDSVRKAMQDLEKLHKDYAKKLQDQLKQAEKTLM 237 >gi|145253418|ref|XP_001398222.1| ribosome recycling factor [Aspergillus niger CBS 513.88] gi|134083787|emb|CAK47121.1| unnamed protein product [Aspergillus niger] Length = 273 Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust. Identities = 44/185 (23%), Positives = 83/185 (44%), Gaps = 7/185 (3%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKVEAYGSH---VPLNQVANVTVL 61 D + D + +S L+ ++ +R G R + ++ ++V+ S + L +A V Sbjct: 86 DFSQLHDGIAAALSRLRDELSKMRVGGRFNTVSIESLRVQLSKSSKQSIKLGDLAQVVPK 145 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQ---VLRIPVPETTEERRLALVKVA 118 RM+ + D++ V + I SNL L P + L + +P T+E R + +A Sbjct: 146 GGRMVTILASDEDHVKPIRSSIVSSNLSLTPQADPHNSLQLNVTIPPPTKESRDQTIAMA 205 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 A EK+ +VR+ R L+ +K A D V + ++K+ + K + FE Sbjct: 206 KAAMEKAAGAVRDSRSAVHKRLQDLQKKKIARPDDVRKAQEQMEKLAEKGQKEVKELFET 265 Query: 179 KKKEI 183 +K + Sbjct: 266 TRKAM 270 >gi|323308800|gb|EGA62037.1| Rrf1p [Saccharomyces cerevisiae FostersO] gi|323337268|gb|EGA78521.1| Rrf1p [Saccharomyces cerevisiae Vin13] gi|323354795|gb|EGA86629.1| Rrf1p [Saccharomyces cerevisiae VL3] Length = 161 Score = 38.5 bits (88), Expect = 0.42, Method: Compositional matrix adjust. Identities = 38/168 (22%), Positives = 78/168 (46%), Gaps = 16/168 (9%) Query: 25 MMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIH 84 M ++ G +P + + + + ++ +A ++ L+++V+D + V +V G+ Sbjct: 1 MNEIKQGNFNPKVFNSL---VFKNNRKFTDIATTSLKGKNALLITVFDPKDVKTVISGVL 57 Query: 85 ESNLGLNP--IVEGQV-LRIPVPETTEERRLALVK----VAHAYAEKS-KISVRNIRRDG 136 +NL L P + + L++ +P T E RL + K V Y + S K S+ IR Sbjct: 58 AANLNLTPERVPNNDLQLKVSLPPPTTESRLKVAKDLKRVFEEYKQSSLKDSLGTIRGSI 117 Query: 137 MDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 + K +K +D V E D++K+ + + F++ +K I+ Sbjct: 118 LKEFKSFKK-----DDAVRKAERDLEKLHKDYVNKLHDQFQKVEKSIV 160 >gi|225558281|gb|EEH06565.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR] Length = 302 Score = 38.5 bits (88), Expect = 0.42, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 68/143 (47%), Gaps = 11/143 (7%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKV-----EAYGSH--VPLN 53 N +++ + + LK D+ LR G R +P ++ ++V + G+ V L Sbjct: 110 NDPFGFTQLENDIAVAVQRLKDDISKLRAGGRFNPEAIESLRVAVMKGDGKGTKETVKLG 169 Query: 54 QVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQ---VLRIPVPETTEER 110 ++A V RML + V D+ + + + SNL LNP + L +P+P T+E Sbjct: 170 ELAQVIPKAGRMLTILVGDQAYIKPITSALLSSNLSLNPQSDPHNSLQLNVPIPPPTKES 229 Query: 111 RLALVKVAHAYAEKSKISVRNIR 133 R VK A A +K+ +VRN R Sbjct: 230 RDQSVKDAKAAMDKASNAVRNAR 252 >gi|239611883|gb|EEQ88870.1| ribosome recycling factor [Ajellomyces dermatitidis ER-3] Length = 277 Score = 38.1 bits (87), Expect = 0.57, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 32/137 (23%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKV-----EAYGSH--VPLNQVA 56 +++ + + LK D+ LR G R +P ++ ++V + GS V L ++A Sbjct: 113 FGFSQLENDIAGAVQRLKDDISKLRAGGRFNPEAIETLRVAVSKGDGKGSKETVKLGELA 172 Query: 57 NVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVK 116 V RML + V ++E L +P+P T+E R VK Sbjct: 173 QVIPKGGRMLTILVGEEE------------------------LNVPIPPPTKESRDQSVK 208 Query: 117 VAHAYAEKSKISVRNIR 133 A A +K+ +VRN R Sbjct: 209 DAKAAMDKASTAVRNAR 225 >gi|261201714|ref|XP_002628071.1| ribosome recycling factor [Ajellomyces dermatitidis SLH14081] gi|239590168|gb|EEQ72749.1| ribosome recycling factor [Ajellomyces dermatitidis SLH14081] Length = 277 Score = 38.1 bits (87), Expect = 0.58, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 32/137 (23%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKV-----EAYGSH--VPLNQVA 56 +++ + + LK D+ LR G R +P ++ ++V + GS V L ++A Sbjct: 113 FGFSQLENDIAGAVQRLKDDISKLRAGGRFNPEAIETLRVAVSKGDGKGSKETVKLGELA 172 Query: 57 NVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVK 116 V RML + V ++E L +P+P T+E R VK Sbjct: 173 QVIPKGGRMLTILVGEEE------------------------LNVPIPPPTKESRDQSVK 208 Query: 117 VAHAYAEKSKISVRNIR 133 A A +K+ +VRN R Sbjct: 209 DAKAAMDKASTAVRNAR 225 >gi|298481915|ref|ZP_07000104.1| ABC transporter [Bacteroides sp. D22] gi|298271779|gb|EFI13351.1| ABC transporter [Bacteroides sp. D22] Length = 578 Score = 37.7 bits (86), Expect = 0.63, Method: Composition-based stats. Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 7/58 (12%) Query: 113 ALVKVAHAYAEKSKISVRN-IRRDGMDHLKKSRKSGKA---SEDMVASLENDIQKITD 166 ALV +A+ E IS+RN +R+D ++H+ KSR +G+ S DM+ +E D++ +TD Sbjct: 105 ALVSRLYAHTE---ISLRNRLRQDLLEHILKSRWNGRETFHSGDMLNRMEEDVRTVTD 159 >gi|50305425|ref|XP_452672.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|60390379|sp|Q6CTR7|RRF1_KLULA RecName: Full=Ribosome-recycling factor, mitochondrial; Short=RRF; AltName: Full=Ribosome-releasing factor, mitochondrial; Flags: Precursor gi|49641805|emb|CAH01523.1| KLLA0C10593p [Kluyveromyces lactis] Length = 241 Score = 37.4 bits (85), Expect = 0.84, Method: Compositional matrix adjust. Identities = 42/177 (23%), Positives = 80/177 (45%), Gaps = 14/177 (7%) Query: 17 TISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMV 76 T+ K+ + + G SP++ + ++V G ++A ++ L+V+V+D + Sbjct: 70 TLELHKRKLAEQKVGTASPTIFNDLRVGKEGQK--FTELAATSLKGRNALIVTVFDPKDT 127 Query: 77 ASVERGIHESNLGLNP---IVEGQVLRIPVPETTEERRLA----LVKVAHAYAEKS-KIS 128 ++ I + L LNP Q L++ +P T E R A L KV Y + K S Sbjct: 128 KNIVSAIMAAGLNLNPERIPNNDQQLKVSLPPITTETRQAVCKDLKKVFEDYKHSALKES 187 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 + ++R + M LK +K D V + D++KI + ++ +K +M+ Sbjct: 188 LGHVRGEIMKELKHLQKKN----DDVKKVIQDVEKIHKEYTIKLQEQLKQAEKSVMN 240 >gi|29345483|ref|NP_808986.1| putative ABC transporter ATP-binding protein [Bacteroides thetaiotaomicron VPI-5482] gi|29337375|gb|AAO75180.1| putative ABC transporter, ATP-binding protein [Bacteroides thetaiotaomicron VPI-5482] Length = 476 Score = 37.4 bits (85), Expect = 0.94, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 7/58 (12%) Query: 113 ALVKVAHAYAEKSKISVRN-IRRDGMDHLKKSRKSGKA---SEDMVASLENDIQKITD 166 ALV +A+ E IS+RN +R+D ++H+ KSR +G+ S DM+ +E D++ +TD Sbjct: 82 ALVSRLYAHTE---ISLRNRLRQDLLEHILKSRWNGRETFHSGDMLNRMEEDVRTVTD 136 >gi|281200592|gb|EFA74810.1| hypothetical protein PPL_11843 [Polysphondylium pallidum PN500] Length = 206 Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust. Identities = 15/39 (38%), Positives = 22/39 (56%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVE 44 DL +K T+ FL++ +R GR P +LDL+ VE Sbjct: 159 DLNTMKSSCDATVDFLRRGFGNIRCGRTGPELLDLITVE 197 >gi|295088202|emb|CBK69725.1| ABC-type multidrug transport system, ATPase and permease components [Bacteroides xylanisolvens XB1A] Length = 211 Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 7/58 (12%) Query: 113 ALVKVAHAYAEKSKISVRN-IRRDGMDHLKKSRKSGKA---SEDMVASLENDIQKITD 166 ALV +A+ E IS+RN +R+D ++H+ KSR +G+ S DM+ +E D++ +TD Sbjct: 82 ALVSRLYAHTE---ISLRNRLRQDLLEHILKSRWNGRETFHSGDMLNRMEEDVRTVTD 136 >gi|325119994|emb|CBZ55547.1| putative ribosome recycling factor domain-containing protein [Neospora caninum Liverpool] Length = 380 Score = 37.0 bits (84), Expect = 1.2, Method: Compositional matrix adjust. Identities = 38/185 (20%), Positives = 83/185 (44%), Gaps = 2/185 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 + ++ + ++ M + + +D+ L R + + V A G L+ +A V V Sbjct: 195 SDAFNVASYEEEMKAALDKMVQDVSALLVHRERAEHFERIPVSAGGEKRRLSDLAQVVVR 254 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQ-VLRIPVPETTEERRLALVKVAHA 120 + V V+ + ++ V + ++ EG +R+ +P+ T E R L A Sbjct: 255 GASTVHVHVFSEANLSKVMSALRAADPKWTLQQEGATAIRLQLPKVTPEMREELKTKARV 314 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMV-ASLENDIQKITDSTIKNIDSFFEEK 179 + +K SVRN+R+ HL K + ++ +D+ L+ + + ++ + D F EK Sbjct: 315 FLVTAKSSVRNLRQAARSHLHKLQFKTRSIDDVKRRELDASLTSLMEAYVGKCDKVFNEK 374 Query: 180 KKEIM 184 ++++ Sbjct: 375 MQQLL 379 >gi|221481837|gb|EEE20207.1| hypothetical protein TGGT1_098720 [Toxoplasma gondii GT1] Length = 270 Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust. Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 1/88 (1%) Query: 98 VLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMV-AS 156 +R+ +P+ T E R L A + +K +VRN+R+ G HL K + ++ +D+ Sbjct: 181 AVRLQLPKVTSEMREELKTKARVFLVTAKSAVRNMRQAGRSHLHKLQFKSRSIDDVKRRE 240 Query: 157 LENDIQKITDSTIKNIDSFFEEKKKEIM 184 L+ + + ++ + D F EK ++ + Sbjct: 241 LDASLTTLMETYVAKCDKVFNEKMQQFL 268 >gi|237843331|ref|XP_002370963.1| ribosome recycling factor domain-containing protein [Toxoplasma gondii ME49] gi|211968627|gb|EEB03823.1| ribosome recycling factor domain-containing protein [Toxoplasma gondii ME49] gi|221502335|gb|EEE28068.1| ribosome recycling factor, putative [Toxoplasma gondii VEG] Length = 266 Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust. Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 1/88 (1%) Query: 98 VLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMV-AS 156 +R+ +P+ T E R L A + +K +VRN+R+ G HL K + ++ +D+ Sbjct: 177 AVRLQLPKVTSEMREELKTKARVFLVTAKSAVRNMRQAGRSHLHKLQFKSRSIDDVKRRE 236 Query: 157 LENDIQKITDSTIKNIDSFFEEKKKEIM 184 L+ + + ++ + D F EK ++ + Sbjct: 237 LDASLTTLMETYVAKCDKVFNEKMQQFL 264 >gi|169836592|ref|ZP_02869780.1| Ribosome Recycling Factor (RRF) [candidate division TM7 single-cell isolate TM7a] Length = 38 Score = 37.0 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 14/31 (45%), Positives = 21/31 (67%) Query: 51 PLNQVANVTVLEPRMLVVSVWDKEMVASVER 81 PLNQV V+ E R+LV+ WDK ++ +E+ Sbjct: 3 PLNQVGTVSAPEARLLVIDPWDKSLIPVIEK 33 >gi|116334924|ref|YP_802419.1| hypothetical protein CRP_022 [Candidatus Carsonella ruddii PV] gi|116235205|dbj|BAF35053.1| hypothetical protein [Candidatus Carsonella ruddii PV] Length = 176 Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust. Identities = 18/135 (13%), Positives = 65/135 (48%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + N + ++ + ++ K+ + ++ + + +K++ S++ L ++ ++ ++ + Sbjct: 1 MSNYQIKIKNYLNLFKEKAFFINIKNLNIEIFNNLKIKYNNSYINLRELCSIKNIDKKKF 60 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + D++++ + + + N G N + + + + VP + E R+ +K+ E Sbjct: 61 LFIFNDQKILLYLIKSKYFENFGFNILKKKTTIELLVPNISREFRINFLKIIKQEYEYFI 120 Query: 127 ISVRNIRRDGMDHLK 141 + ++R+ + H+K Sbjct: 121 EILESLRKKELLHIK 135 >gi|298489816|ref|YP_003719993.1| small GTP-binding protein ['Nostoc azollae' 0708] gi|298231734|gb|ADI62870.1| small GTP-binding protein ['Nostoc azollae' 0708] Length = 676 Score = 36.2 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 16/42 (38%), Positives = 25/42 (59%) Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALV 115 ++V V G+ E + G+ P++E + P PETT ERRL + Sbjct: 248 DLVVPVFFGVAEQDFGVRPLLEALLREAPEPETTMERRLKTI 289 >gi|254586291|ref|XP_002498713.1| ZYRO0G16830p [Zygosaccharomyces rouxii] gi|238941607|emb|CAR29780.1| ZYRO0G16830p [Zygosaccharomyces rouxii] Length = 243 Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 9/129 (6%) Query: 16 DTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEM 75 +T+ KK + + G +P + D +K++ GS ++ A+ + L+V+V+D + Sbjct: 72 NTLELHKKKLNEFKQGVANPRIFDELKLQN-GSK--FSEAASTSTKGKNALLVTVYDPKD 128 Query: 76 VASVERGIHESNLGLNP---IVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 V I + L LNP Q L+I +P T E R + K E+ K S Sbjct: 129 TKHVISTIMAAGLNLNPERVPNNDQQLKISLPPMTTETRTRMCKDLKKVFEEYKNSS--- 185 Query: 133 RRDGMDHLK 141 +D + H++ Sbjct: 186 SKDSLGHVR 194 >gi|86740826|ref|YP_481226.1| hypothetical protein Francci3_2125 [Frankia sp. CcI3] gi|86567688|gb|ABD11497.1| conserved hypothetical protein [Frankia sp. CcI3] Length = 470 Score = 35.8 bits (81), Expect = 2.6, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 30/63 (47%) Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V + WD+ RG E + G PI+EG ++R+ V ERR V + H+ A+ Sbjct: 270 VATCWDRAHPRLTRRGGWEHHTGQLPIIEGTLIRLVVDRLPGERRPKPVWLWHSTADAGS 329 Query: 127 ISV 129 V Sbjct: 330 ADV 332 >gi|312220443|emb|CBY00384.1| hypothetical protein [Leptosphaeria maculans] Length = 403 Score = 35.8 bits (81), Expect = 2.7, Method: Compositional matrix adjust. Identities = 41/187 (21%), Positives = 87/187 (46%), Gaps = 24/187 (12%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKVEAYGS------HVPLNQ 54 ++ D+ ++ + I L D+ LR+G +++P +++ +KV+ G+ V L Sbjct: 90 DEAYDVSGLETEILKAIEKLTHDLSLLRSGGKMNPEVVEALKVQ-LGTVSEGKESVRLGD 148 Query: 55 VANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQ----VLRIPVPETTEER 110 +A V V R+L + ++ + + I S L P+ +++P+P T E Sbjct: 149 IAQV-VPRGRVLNIVCGEEGHIKPISSAIASSPHSLTPLAPEPSNPLTIQVPLPPPTGES 207 Query: 111 RLALVKVAHAYAEKSKISVRNIRRDGMDHLKKS-----------RKSGKASEDMVASLEN 159 R A V+ + AE++ ++ R++ L+K +K+ K ED+V Sbjct: 208 RRAAVEASIKAAERADKWIQTARQEHNKKLRKFELNKEVLPDDLQKAKKRMEDVVKKGHT 267 Query: 160 DIQKITD 166 ++++I+D Sbjct: 268 EVKRISD 274 >gi|70944426|ref|XP_742145.1| ribosome releasing factor [Plasmodium chabaudi chabaudi] gi|56520960|emb|CAH88742.1| ribosome releasing factor, putative [Plasmodium chabaudi chabaudi] Length = 141 Score = 35.4 bits (80), Expect = 3.3, Method: Compositional matrix adjust. Identities = 30/128 (23%), Positives = 62/128 (48%), Gaps = 5/128 (3%) Query: 52 LNQVANVTVLEPRMLVVSVWDKEMVASV-ERGIHESNLGLNPIVEGQVLRIPVPETTEER 110 +N + ++ E + +++ +D V + + I E N L ++ + + +P +E Sbjct: 16 INHICHIKKKE-NLFIITPYDPYFVNFIYQHFIKEYN-ELKFYIKDKSVYAVIPPLSEHL 73 Query: 111 RLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIK 170 + + E+SKI++RN+R+ M L+K + +D+ +N IQ + D T K Sbjct: 74 KNEIKNKIKDKIEESKITLRNVRKKFMTKLEKIK--NYIGKDIYFKQKNHIQSLHDQTKK 131 Query: 171 NIDSFFEE 178 +I+ F E Sbjct: 132 SIEKIFNE 139 >gi|116075501|ref|ZP_01472761.1| hypothetical protein RS9916_28114 [Synechococcus sp. RS9916] gi|116067698|gb|EAU73452.1| hypothetical protein RS9916_28114 [Synechococcus sp. RS9916] Length = 166 Score = 35.4 bits (80), Expect = 3.5, Method: Compositional matrix adjust. Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 9/121 (7%) Query: 66 LVVSVWDKEMVASVERGIHESNLGLN--PIVEGQVLRIPVPETTEERRLALVKVAHAYAE 123 L+ +V + + ++ +E+G + +G+ P+ G + ET+ + L + +Y + Sbjct: 38 LLENVPEYQDLSDMEKGFMKMGVGIASLPLAGGLAYFCYLHETSTLEKSVLQRSWKSYVD 97 Query: 124 KSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 ++ ++ D + KSGKASE ++ L N I ST K ID+F E Sbjct: 98 ---TFIKGMK----DQSRSETKSGKASEKILEILFNKIAAFPPSTCKEIDAFANEPPPNP 150 Query: 184 M 184 M Sbjct: 151 M 151 >gi|218190713|gb|EEC73140.1| hypothetical protein OsI_07164 [Oryza sativa Indica Group] Length = 467 Score = 35.4 bits (80), Expect = 3.5, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Query: 111 RLALVKVAHAYAEKSK--ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDST 168 RL L + Y E IS ++ +G K+ R S S D+ ASL+ND+Q I D Sbjct: 163 RLYLFEAQGWYQETDSRSISCIEMKAEGQASRKRKRGSNSCSSDLAASLDNDVQVIIDGK 222 Query: 169 IKN 171 ++ Sbjct: 223 FEH 225 >gi|115446099|ref|NP_001046829.1| Os02g0469900 [Oryza sativa Japonica Group] gi|47497414|dbj|BAD19471.1| glutathione S-transferase GST16-like protein [Oryza sativa Japonica Group] gi|47497529|dbj|BAD19581.1| glutathione S-transferase GST16-like protein [Oryza sativa Japonica Group] gi|113536360|dbj|BAF08743.1| Os02g0469900 [Oryza sativa Japonica Group] gi|215686854|dbj|BAG89704.1| unnamed protein product [Oryza sativa Japonica Group] gi|222622836|gb|EEE56968.1| hypothetical protein OsJ_06686 [Oryza sativa Japonica Group] gi|323388905|gb|ADX60257.1| ARID transcription factor [Oryza sativa Japonica Group] Length = 467 Score = 35.4 bits (80), Expect = 3.5, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Query: 111 RLALVKVAHAYAEKSK--ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDST 168 RL L + Y E IS ++ +G K+ R S S D+ ASL+ND+Q I D Sbjct: 163 RLYLFEAQGWYQETDSRSISCIEMKAEGQASRKRKRGSNSCSSDLAASLDNDVQVIIDGK 222 Query: 169 IKN 171 ++ Sbjct: 223 FEH 225 >gi|326797899|ref|YP_004315718.1| glycoside hydrolase family 2 sugar binding protein [Sphingobacterium sp. 21] gi|326548663|gb|ADZ77048.1| glycoside hydrolase family 2 sugar binding protein [Sphingobacterium sp. 21] Length = 917 Score = 35.0 bits (79), Expect = 4.1, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 8/93 (8%) Query: 53 NQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRL 112 N V L R L++ DK V ++ER IH + G I + +P E RR+ Sbjct: 553 NWVTGKESLPYRALLIPKTDKMPVETLERLIHLAENGATLIFQSLPKDVPGAHDLERRRM 612 Query: 113 ALVKVAHAYAE--------KSKISVRNIRRDGM 137 L +V + K KI V+ I RDG+ Sbjct: 613 KLAQVLENIKKMSRQPKVGKGKILVKEILRDGL 645 >gi|186685147|ref|YP_001868343.1| elongation factor G [Nostoc punctiforme PCC 73102] gi|186467599|gb|ACC83400.1| small GTP-binding protein [Nostoc punctiforme PCC 73102] Length = 682 Score = 35.0 bits (79), Expect = 4.4, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 24/39 (61%) Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRL 112 ++V V G+ E + G+ P++E + P PETT ERRL Sbjct: 248 DLVVPVFFGVAEQDYGVRPLLEALLREAPEPETTAERRL 286 >gi|119607928|gb|EAW87522.1| mitochondrial ribosome recycling factor, isoform CRA_c [Homo sapiens] Length = 186 Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust. Identities = 17/67 (25%), Positives = 36/67 (53%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +I+L+ + + M I LK + R SP LD + V + LNQ++ +++ P Sbjct: 82 IINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMKSP 141 Query: 64 RMLVVSV 70 ++++V++ Sbjct: 142 QLILVNM 148 >gi|300724823|ref|YP_003714148.1| exonuclease V subunit alpha [Xenorhabdus nematophila ATCC 19061] gi|297631365|emb|CBJ92060.1| exonuclease V, alpha chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase [Xenorhabdus nematophila ATCC 19061] Length = 628 Score = 34.7 bits (78), Expect = 6.8, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 2/62 (3%) Query: 22 KKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVAN-VTVLEPRMLVVSVWDKEMVASVE 80 + D LR GR +P LD++ ++ S V L +A+ + L PR V+ + DK+ +ASVE Sbjct: 261 QPDSQKLRYGRDNPLSLDILIIDE-ASMVDLPMMAHLIDALPPRAKVIFLGDKDQLASVE 319 Query: 81 RG 82 G Sbjct: 320 AG 321 >gi|262340876|ref|YP_003283731.1| putative outer membrane protein [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272213|gb|ACY40121.1| putative outer membrane protein [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 827 Score = 34.3 bits (77), Expect = 7.1, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 28/41 (68%) Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQK 163 E ++ V+ IR++ ++KK + K S+D++ +++NDIQ+ Sbjct: 116 EIHEVQVKGIRKEQFSNIKKLKSGDKISDDLIQTIKNDIQE 156 >gi|55958150|emb|CAI14712.1| mitochondrial ribosome recycling factor [Homo sapiens] Length = 124 Score = 34.3 bits (77), Expect = 7.5, Method: Compositional matrix adjust. Identities = 17/67 (25%), Positives = 36/67 (53%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +I+L+ + + M I LK + R SP LD + V + LNQ++ +++ P Sbjct: 38 IINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMKSP 97 Query: 64 RMLVVSV 70 ++++V++ Sbjct: 98 QLILVNM 104 >gi|291240807|ref|XP_002740309.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii] Length = 927 Score = 34.3 bits (77), Expect = 7.6, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 4/85 (4%) Query: 98 VLRIPVPETTEERRLA---LVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMV 154 +L +P +ER++ +VK+ + EK ++VR R G HL +S + S+DM+ Sbjct: 661 LLSVPRRICADERQIKHMDMVKIIARFQEKDAVTVRIYTRMGELHLSRSIHHVELSDDMM 720 Query: 155 ASLEND-IQKITDSTIKNIDSFFEE 178 +E D Q I S+I + F + Sbjct: 721 EIMERDNKQIIIRSSISLVRGFIHD 745 >gi|154299907|ref|XP_001550371.1| predicted protein [Botryotinia fuckeliana B05.10] gi|150857124|gb|EDN32316.1| predicted protein [Botryotinia fuckeliana B05.10] Length = 119 Score = 34.3 bits (77), Expect = 7.6, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 14/105 (13%) Query: 83 IHESNLGLNPIVEGQ---VLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDH 139 I S L L P + Q L IP+P T+E R A ++ A E + VRN R Sbjct: 13 IQSSTLSLQPTPDPQNPLALNIPIPPPTKESRDAALQAASKAGEIASNGVRNARGAMQKK 72 Query: 140 LKK-----------SRKSGKASEDMVASLENDIQKITDSTIKNID 173 L+ S+K+ K E +V +++KI ++ K ++ Sbjct: 73 LRAMEVKKTVRPDDSKKAHKEMEKVVEKGNGEVKKIVEAARKGME 117 >gi|119607931|gb|EAW87525.1| mitochondrial ribosome recycling factor, isoform CRA_e [Homo sapiens] gi|119607932|gb|EAW87526.1| mitochondrial ribosome recycling factor, isoform CRA_e [Homo sapiens] gi|158257050|dbj|BAF84498.1| unnamed protein product [Homo sapiens] gi|158259041|dbj|BAF85479.1| unnamed protein product [Homo sapiens] Length = 168 Score = 34.3 bits (77), Expect = 8.6, Method: Compositional matrix adjust. Identities = 17/67 (25%), Positives = 36/67 (53%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +I+L+ + + M I LK + R SP LD + V + LNQ++ +++ P Sbjct: 82 IINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMKSP 141 Query: 64 RMLVVSV 70 ++++V++ Sbjct: 142 QLILVNM 148 >gi|55958146|emb|CAI14708.1| mitochondrial ribosome recycling factor [Homo sapiens] gi|221042068|dbj|BAH12711.1| unnamed protein product [Homo sapiens] gi|221045920|dbj|BAH14637.1| unnamed protein product [Homo sapiens] Length = 158 Score = 34.3 bits (77), Expect = 8.7, Method: Compositional matrix adjust. Identities = 17/67 (25%), Positives = 36/67 (53%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +I+L+ + + M I LK + R SP LD + V + LNQ++ +++ P Sbjct: 82 IINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMKSP 141 Query: 64 RMLVVSV 70 ++++V++ Sbjct: 142 QLILVNM 148 >gi|295397144|ref|ZP_06807251.1| phage integrase family site-specific recombinase [Aerococcus viridans ATCC 11563] gi|294974612|gb|EFG50332.1| phage integrase family site-specific recombinase [Aerococcus viridans ATCC 11563] Length = 855 Score = 34.3 bits (77), Expect = 8.8, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 6/73 (8%) Query: 97 QVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVAS 156 ++L + VPETT E +L K + Y E K+ + + +G L++ K GK E ++ Sbjct: 139 RLLLVHVPETTSE---SLNKYINRYIEHIKL-LSDTSSNGSFRLREIAKIGKIVEGLL-- 192 Query: 157 LENDIQKITDSTI 169 L+NDI KIT S I Sbjct: 193 LQNDISKITSSEI 205 >gi|55958145|emb|CAI14707.1| mitochondrial ribosome recycling factor [Homo sapiens] Length = 153 Score = 34.3 bits (77), Expect = 9.0, Method: Compositional matrix adjust. Identities = 17/67 (25%), Positives = 36/67 (53%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +I+L+ + + M I LK + R SP LD + V + LNQ++ +++ P Sbjct: 82 IINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMKSP 141 Query: 64 RMLVVSV 70 ++++V++ Sbjct: 142 QLILVNM 148 >gi|326433736|gb|EGD79306.1| hypothetical protein PTSG_09722 [Salpingoeca sp. ATCC 50818] Length = 76 Score = 33.9 bits (76), Expect = 9.6, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 4/77 (5%) Query: 107 TEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITD 166 T E + L K+A EK K RNIR + LKKS A++D +E IQ+ D Sbjct: 2 TTEYKSKLQKLAKDILEKYKHQARNIRNKYVAQLKKS----DATKDDKRHIETYIQQCMD 57 Query: 167 STIKNIDSFFEEKKKEI 183 ++ +D+ +E K K + Sbjct: 58 GHLRTMDAAYEAKHKAL 74 >gi|119607930|gb|EAW87524.1| mitochondrial ribosome recycling factor, isoform CRA_d [Homo sapiens] Length = 273 Score = 33.9 bits (76), Expect = 9.8, Method: Compositional matrix adjust. Identities = 17/67 (25%), Positives = 36/67 (53%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +I+L+ + + M I LK + R SP LD + V + LNQ++ +++ P Sbjct: 156 IINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMKSP 215 Query: 64 RMLVVSV 70 ++++V++ Sbjct: 216 QLILVNM 222 >gi|119607933|gb|EAW87527.1| mitochondrial ribosome recycling factor, isoform CRA_f [Homo sapiens] Length = 176 Score = 33.9 bits (76), Expect = 9.9, Method: Compositional matrix adjust. Identities = 17/67 (25%), Positives = 36/67 (53%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +I+L+ + + M I LK + R SP LD + V + LNQ++ +++ P Sbjct: 82 IINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMKSP 141 Query: 64 RMLVVSV 70 ++++V++ Sbjct: 142 QLILVNM 148 >gi|322695925|gb|EFY87725.1| ribosomal recycling factor precursor, putative [Metarhizium acridum CQMa 102] Length = 290 Score = 33.9 bits (76), Expect = 10.0, Method: Compositional matrix adjust. Identities = 45/180 (25%), Positives = 76/180 (42%), Gaps = 15/180 (8%) Query: 5 IDLQNIKDRMGDTISFLKKDMMT-LRTGRVSPSMLDLVKV---EAYG--SHVPLNQVANV 58 +D ++ + ++ K + T L GR +PS L + + A G S PL ++A V Sbjct: 102 LDFSSLVASLAPQDTYYKSALQTILHGGRFNPSALGGLPIAVKSASGEASTFPLGELAQV 161 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESN-LGLNPIVEGQVLRIPVPETTEERRLALVK- 116 R + + V D+E + + + S P + + ER+ LV+ Sbjct: 162 VPRTNRTISLLVNDREYIKPIMSAVQSSREFNQQPQRSDDNDLELLLKVELERKEELVRR 221 Query: 117 ---VAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNID 173 HA+ +K VR R LK +K G D+V E ++QK+ D+ +K ID Sbjct: 222 IRETTHAWRDK----VRQARTRHDKVLKGWQKDGTVLRDVVRRAERELQKLQDAKMKEID 277 Searching..................................................done Results from round 2 >gi|296132870|ref|YP_003640117.1| ribosome recycling factor [Thermincola sp. JR] gi|296031448|gb|ADG82216.1| ribosome recycling factor [Thermincola potens JR] Length = 185 Score = 256 bits (656), Expect = 8e-67, Method: Composition-based stats. Identities = 78/180 (43%), Positives = 119/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + +DRM + L+KD+ TLRTGR +P++L+ ++V+ YG P+NQ+A V+ EPR+L Sbjct: 6 INEAEDRMRKAVEALRKDLATLRTGRATPALLEKIQVDYYGVPTPINQMAKVSAPEPRLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK ++ +E+ I +S+LGL P +G V+R+ +P+ T+ERR LVK+ AE + Sbjct: 66 VIQPWDKSVLGEIEKAIMKSDLGLTPNNDGTVIRLNIPQLTQERRAELVKICKKKAEDGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD D LK+ KSG SED + +IQK+TD IK +D E K++EIM Sbjct: 126 VAIRNIRRDANDQLKEFEKSGDISEDDNRRGQEEIQKLTDKYIKEVDQLLEHKEQEIMEV 185 >gi|209964517|ref|YP_002297432.1| ribosome recycling factor frr [Rhodospirillum centenum SW] gi|226749936|sp|B6ISU8|RRF_RHOCS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|209957983|gb|ACI98619.1| ribosome recycling factor frr [Rhodospirillum centenum SW] Length = 185 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 90/181 (49%), Positives = 123/181 (67%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 D+++ + RM + L+K+ LRTGR S ++LD V V+AYGS PLNQVA V V EPR+ Sbjct: 5 DIKSFERRMDGAVETLRKEFGGLRTGRASTTLLDPVYVDAYGSSSPLNQVATVGVPEPRL 64 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 + V VWD+ +V +VE+ I E+ LGLNP +GQ LR+P+PE +ERR L KVA YAE++ Sbjct: 65 ITVQVWDRSLVKAVEKAIREAGLGLNPQSDGQTLRVPIPELNQERRQELAKVAAKYAEQA 124 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +++VRN+RRDGMD LKK K G SED + + +Q +TD+ IK ID K+KEIM Sbjct: 125 RVAVRNVRRDGMDMLKKLLKDGDISEDEQKTWADKVQALTDAHIKKIDEALATKEKEIMQ 184 Query: 186 F 186 Sbjct: 185 V 185 >gi|332701342|ref|ZP_08421430.1| Ribosome-recycling factor [Desulfovibrio africanus str. Walvis Bay] gi|332551491|gb|EGJ48535.1| Ribosome-recycling factor [Desulfovibrio africanus str. Walvis Bay] Length = 184 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 71/181 (39%), Positives = 113/181 (62%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 +++ ++ RM + LK++ LRTGR S ++L+ + ++ YGS P++QVA+V + R Sbjct: 4 EIKELETRMQKVVENLKREFGRLRTGRASTTLLEGINIDYYGSSTPISQVASVATPDSRT 63 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 + + WD+ +E+ I S+LGLNP+ +G+++RI +P TEERR LVK+ Y E+ Sbjct: 64 ITIQPWDRGSFGPIEKAIMTSDLGLNPVNDGKIIRISLPPLTEERRKDLVKLGKKYTEEG 123 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 K++VRNIRRDG D LKK K +ED + +++IQK+TD + D K+KEIM Sbjct: 124 KVAVRNIRRDGNDTLKKLEKDKTITEDDLRRGQDEIQKLTDKYVAKCDEALAVKEKEIME 183 Query: 186 F 186 Sbjct: 184 I 184 >gi|254504672|ref|ZP_05116823.1| ribosome recycling factor [Labrenzia alexandrii DFL-11] gi|222440743|gb|EEE47422.1| ribosome recycling factor [Labrenzia alexandrii DFL-11] Length = 187 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 93/184 (50%), Positives = 132/184 (71%) Query: 3 QVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLE 62 + +DL ++K RM +S LK D LRTGR S SMLD + V+AYG +PL+QV V+V E Sbjct: 4 EGVDLDDLKRRMQGALSSLKTDFSGLRTGRASASMLDPISVDAYGQSMPLSQVGTVSVPE 63 Query: 63 PRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 PRM+ + VWDK MVA+VE+ I ESNLGLNP+V+GQ+LR+P+PE +ERR L+KVAH YA Sbjct: 64 PRMVAIQVWDKSMVAAVEKAIRESNLGLNPVVDGQLLRLPIPELNQERRQELIKVAHKYA 123 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 E++K+++R++RRDGMD KK+ K G+ S+D +++QK+TD I +D+ +K+ E Sbjct: 124 EQAKVAIRHVRRDGMDDAKKAEKDGEISQDDSRVASDEVQKLTDGMIGEVDAMLAKKEAE 183 Query: 183 IMHF 186 I Sbjct: 184 ISQV 187 >gi|268590529|ref|ZP_06124750.1| ribosome recycling factor [Providencia rettgeri DSM 1131] gi|291314115|gb|EFE54568.1| ribosome recycling factor [Providencia rettgeri DSM 1131] Length = 185 Score = 255 bits (652), Expect = 2e-66, Method: Composition-based stats. Identities = 82/179 (45%), Positives = 117/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ +DRM ++ K + +RTGR SPS+LD + VE YGS PL Q+ANVTV + R L Sbjct: 7 KDAQDRMEKSLEAFKSQISKVRTGRASPSLLDGITVEYYGSATPLRQLANVTVEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +SV+D+ M ++E+ I S+LGLNP G V+R+P+P TEERR L+KV AE+ +I Sbjct: 67 ISVFDRSMSPAIEKAIMASDLGLNPSSAGTVIRVPLPPLTEERRKDLIKVVRGDAEQGRI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD D +K K + SED ++DIQK+TDS IK +D +K+ E+M F Sbjct: 127 AVRNVRRDANDKVKALLKDKEISEDDERRSQDDIQKLTDSYIKKVDEALAQKEAELMEF 185 >gi|253687340|ref|YP_003016530.1| ribosome recycling factor [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259494550|sp|C6DAI6|RRF_PECCP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|251753918|gb|ACT11994.1| ribosome recycling factor [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 185 Score = 255 bits (652), Expect = 2e-66, Method: Composition-based stats. Identities = 80/179 (44%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM + K + +RTGR SPS+LD ++VE YGS PL QVANV V + R L Sbjct: 7 KDAETRMDKCVEAFKNQISKIRTGRASPSILDGIQVEYYGSATPLRQVANVVVEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ + +VE+ I S+LGLNP G V+R+P+P TEERR L+KV AE+ ++ Sbjct: 67 ITVFDRTLGPAVEKAIMASDLGLNPSSAGTVIRVPLPPLTEERRKDLIKVVRGEAEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRN+RRD D LK K SED ++D+QK+TD+ IK +D+ EK+ E+M F Sbjct: 127 SVRNVRRDANDKLKALLKDKAISEDEERRAQDDVQKLTDNFIKKVDTALAEKEAELMEF 185 >gi|183597594|ref|ZP_02959087.1| hypothetical protein PROSTU_00876 [Providencia stuartii ATCC 25827] gi|188023090|gb|EDU61130.1| hypothetical protein PROSTU_00876 [Providencia stuartii ATCC 25827] Length = 185 Score = 255 bits (652), Expect = 2e-66, Method: Composition-based stats. Identities = 81/179 (45%), Positives = 118/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ +DRM ++ LK + +RTGR SPS+LD + V+ YG+ PL Q+ANVTV + R L Sbjct: 7 KDAQDRMEKSVEALKNQISKVRTGRASPSLLDGIMVDYYGAATPLRQLANVTVEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +SV+D+ M ++E+ I S+LGLNP G V+R+P+P TEERR L+KV A AE+ ++ Sbjct: 67 ISVFDRSMSPAIEKAIMASDLGLNPSSAGTVIRVPLPPLTEERRKDLIKVVRAEAEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD D +K K + SED ++DIQK+TD IK +D +K+ E+M F Sbjct: 127 AVRNIRRDANDKIKALLKDKEISEDEERRSQDDIQKLTDGYIKKVDEALAQKEAELMEF 185 >gi|308185743|ref|YP_003929874.1| Ribosome recycling factor [Pantoea vagans C9-1] gi|308056253|gb|ADO08425.1| Ribosome recycling factor [Pantoea vagans C9-1] Length = 219 Score = 254 bits (650), Expect = 4e-66, Method: Composition-based stats. Identities = 76/186 (40%), Positives = 119/186 (63%), Gaps = 1/186 (0%) Query: 2 NQVIDLQ-NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 N + D++ + RM + K + +RTGR SPS+LD + VE YG+ PL Q+A+VTV Sbjct: 34 NVINDIKKDADTRMEKCVEAFKTTISKVRTGRASPSLLDGIVVEYYGTPTPLRQLASVTV 93 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R L ++V+D+ + +VE+ I +S+LGLNP G +R+P+P TEERR L+K+ Sbjct: 94 EDSRTLKINVFDRSLSQAVEKAIMKSDLGLNPSSAGTDIRVPLPALTEERRKDLIKIVRG 153 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE+ ++SVRN+RRD D +K K + SED ++++QK+TD+ IK +D+ EK+ Sbjct: 154 EAEQGRVSVRNVRRDANDKIKALLKDKEISEDDERRAQDEVQKMTDAYIKKVDAALSEKE 213 Query: 181 KEIMHF 186 E+M F Sbjct: 214 TELMDF 219 >gi|270264817|ref|ZP_06193081.1| ribosome-recycling factor [Serratia odorifera 4Rx13] gi|270041115|gb|EFA14215.1| ribosome-recycling factor [Serratia odorifera 4Rx13] Length = 199 Score = 254 bits (649), Expect = 5e-66, Method: Composition-based stats. Identities = 77/179 (43%), Positives = 118/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ RM ++ K + +RTGR SPS+LD + VE YGS PL Q+ANVTV + R L Sbjct: 21 KDADSRMEKSVEAFKTQISKIRTGRASPSILDGIMVEYYGSATPLRQLANVTVEDSRTLA 80 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++++D+ + ++VE+ I S+LGLNP G V+R+P+P TEERR L+KV AE+ ++ Sbjct: 81 INLFDRSLGSAVEKAIMSSDLGLNPSSAGSVIRVPLPPLTEERRKDLIKVVRNEAEQGRV 140 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD D +K K + SED ++D+QK+TD+ IK +D+ +K+KE+M F Sbjct: 141 AVRNVRRDANDKVKALLKDKEISEDEDRRSQDDVQKLTDAYIKLLDAALADKEKELMEF 199 >gi|227326540|ref|ZP_03830564.1| ribosome recycling factor [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 185 Score = 254 bits (649), Expect = 5e-66, Method: Composition-based stats. Identities = 82/179 (45%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM + K + +RTGR SPS+LD ++VE YGS PL QVANV V + R L Sbjct: 7 KDAETRMDKCVEAFKNQISKIRTGRASPSILDGIQVEYYGSATPLRQVANVVVEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +SV+D+ + +VE+ I S+LGLNP G V+R+P+P TEERR L+KV AE+ +I Sbjct: 67 ISVFDRSLGPAVEKAIMASDLGLNPSSAGTVIRVPLPPLTEERRKDLIKVVRGEAEQGRI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRN+RRD D LK K SED ++D+QK+TD+ IK +D EK+ E+M F Sbjct: 127 SVRNVRRDANDKLKALLKDKAISEDEERRAQDDVQKLTDNFIKKVDVALAEKEAELMEF 185 >gi|50119974|ref|YP_049141.1| ribosome recycling factor [Pectobacterium atrosepticum SCRI1043] gi|60390249|sp|Q6D8E0|RRF_ERWCT RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|49610500|emb|CAG73945.1| ribosome recycling factor [Pectobacterium atrosepticum SCRI1043] Length = 185 Score = 253 bits (648), Expect = 6e-66, Method: Composition-based stats. Identities = 80/179 (44%), Positives = 112/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM + K + +RTGR SPS+LD + VE YGS PL Q+ANV V + R L Sbjct: 7 KDAETRMDKCVEAFKNQINRIRTGRASPSILDGIHVEYYGSATPLRQLANVVVEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +SV+D+ + +VE+ I S+LGLNP G V+R+P+P TEERR L+KV AE+ +I Sbjct: 67 ISVFDRSLSPAVEKAIMASDLGLNPSSAGTVIRVPLPPLTEERRKDLIKVVRGEAEQGRI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRN+RRD D K K SED ++D+QK+TD+ IK +D EK+ E+M F Sbjct: 127 SVRNVRRDANDKFKALLKDKAISEDEERRAQDDVQKLTDNFIKKVDVALAEKEAELMEF 185 >gi|261822596|ref|YP_003260702.1| ribosome recycling factor [Pectobacterium wasabiae WPP163] gi|261606609|gb|ACX89095.1| ribosome recycling factor [Pectobacterium wasabiae WPP163] Length = 185 Score = 253 bits (648), Expect = 6e-66, Method: Composition-based stats. Identities = 80/179 (44%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM + K + +RTGR SPS+LD ++VE YGS PL Q+ANV V + R L Sbjct: 7 KDAETRMDKCVEAFKNQINRIRTGRASPSILDGIQVEYYGSATPLRQLANVVVEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +SV+D+ + +VE+ I S+LGLNP G V+R+P+P TEERR L+KV AE+ +I Sbjct: 67 ISVFDRSLGPAVEKAIMASDLGLNPSSAGTVIRVPLPPLTEERRKDLIKVVRGEAEQGRI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRN+RRD D K K SED ++D+QK+TD+ IK +D EK+ E+M F Sbjct: 127 SVRNVRRDANDKFKALLKDKAISEDEERRAQDDVQKLTDNFIKKVDVALAEKEAELMEF 185 >gi|170749846|ref|YP_001756106.1| ribosome recycling factor [Methylobacterium radiotolerans JCM 2831] gi|190360252|sp|B1LTQ4|RRF_METRJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|170656368|gb|ACB25423.1| ribosome recycling factor [Methylobacterium radiotolerans JCM 2831] Length = 187 Score = 253 bits (648), Expect = 7e-66, Method: Composition-based stats. Identities = 93/182 (51%), Positives = 127/182 (69%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 DL +IK RM ++ L KD+ +LRTGR +PS+LD ++V+AYGS +P+ QVA V+V EPR Sbjct: 6 FDLNDIKRRMQGAVASLSKDLGSLRTGRATPSLLDPIQVDAYGSMMPMAQVATVSVPEPR 65 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 +L +SVWD+ MV +VE+ I ES+LGLNP EGQ +R+ +PE E+RR +VKVAH Y E+ Sbjct: 66 LLSISVWDRSMVTAVEKAIRESDLGLNPQTEGQTIRLRIPEMNEQRRKEMVKVAHKYTEE 125 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++++VR++RRDG+DHLKK K SED D+QK TD I ID K+KEIM Sbjct: 126 ARVAVRHVRRDGLDHLKKLLKDSAISEDDEKRQATDVQKATDQYIAEIDGVLASKEKEIM 185 Query: 185 HF 186 Sbjct: 186 QV 187 >gi|218888003|ref|YP_002437324.1| ribosome recycling factor [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|226703259|sp|B8DSA1|RRF_DESVM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|66766332|dbj|BAD99030.1| ribosome recycling factor [Desulfovibrio vulgaris] gi|218758957|gb|ACL09856.1| ribosome recycling factor [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 186 Score = 253 bits (648), Expect = 7e-66, Method: Composition-based stats. Identities = 78/186 (41%), Positives = 118/186 (63%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ L + ++RM + L ++ LRTGR S S++D +KV+ YG+ P++Q+A+V+V Sbjct: 1 MDMDSILLDAEERMEKALGSLDREFAKLRTGRASTSLVDNIKVDYYGTPTPISQLASVSV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R L + WD+ VE+ I +S+LGLNP+ +G+++RI +P TEERR LVKVA Sbjct: 61 PDSRTLTIQPWDRSAFQLVEKAIMKSDLGLNPVNDGKIIRISIPPLTEERRKDLVKVARK 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 Y E++K++VRN+RRD D LKK K + SED V +D+QK+TD + D K+ Sbjct: 121 YTEEAKVAVRNVRRDANDALKKLEKGKEISEDDVRKSTDDVQKLTDRFVAKSDEKCTAKE 180 Query: 181 KEIMHF 186 KEIM Sbjct: 181 KEIMEL 186 >gi|227114690|ref|ZP_03828346.1| ribosome recycling factor [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 185 Score = 253 bits (648), Expect = 7e-66, Method: Composition-based stats. Identities = 79/179 (44%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM + K + +RTGR SPS+LD ++VE YGS PL Q+AN+ V + R L Sbjct: 7 KDAETRMDKCVEAFKNQINRIRTGRASPSILDGIQVEYYGSATPLRQLANIVVEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +SV+D+ + +VE+ I S+LGLNP G V+R+P+P TEERR L+KV AE+ +I Sbjct: 67 ISVFDRSLGPAVEKAIMASDLGLNPSSAGTVIRVPLPPLTEERRKDLIKVVRGEAEQGRI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRN+RRD D K K SED ++D+QK+TD+ IK +D EK+ E+M F Sbjct: 127 SVRNVRRDANDKFKALLKDKAISEDEERRAQDDVQKLTDNFIKKVDVALAEKEAELMEF 185 >gi|317046985|ref|YP_004114633.1| ribosome recycling factor [Pantoea sp. At-9b] gi|316948602|gb|ADU68077.1| ribosome recycling factor [Pantoea sp. At-9b] Length = 216 Score = 253 bits (647), Expect = 8e-66, Method: Composition-based stats. Identities = 77/179 (43%), Positives = 116/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM + K + +RTGR SPS+LD + VE YG+ PL Q+A+VTV + R L Sbjct: 38 KDAETRMDKCVEAFKNTISKVRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLK 97 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ + +VE+ I S+LGLNP G +R+P+P TEERR L+K+ AE+ ++ Sbjct: 98 INVFDRSLGPAVEKAIMASDLGLNPSSAGSDIRVPLPPLTEERRKDLIKIVRGEAEQGRV 157 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRN+RRD D +K K + SED +++IQK+TD IKN+D+ EK+KE+M F Sbjct: 158 SVRNVRRDANDKIKALLKDKEISEDDERRAQDEIQKMTDVRIKNVDAALAEKEKELMEF 216 >gi|212710394|ref|ZP_03318522.1| hypothetical protein PROVALCAL_01454 [Providencia alcalifaciens DSM 30120] gi|212686976|gb|EEB46504.1| hypothetical protein PROVALCAL_01454 [Providencia alcalifaciens DSM 30120] Length = 185 Score = 253 bits (647), Expect = 8e-66, Method: Composition-based stats. Identities = 81/179 (45%), Positives = 117/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ +DRM ++ LK + +RTGR SPS+LD + VE YGS PL Q+ANVTV + R L Sbjct: 7 KDAQDRMEKSLESLKSQISKVRTGRASPSLLDGITVEYYGSATPLRQLANVTVEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +SV+D+ M ++E+ I S+LGLNP G V+R+P+P TEERR L+KV AE+ +I Sbjct: 67 ISVFDRSMSPAIEKAIMASDLGLNPSSAGTVIRVPLPPLTEERRKDLIKVVRGDAEQGRI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD D +K K + SED ++DIQK+TD IK +D +K+ E+M F Sbjct: 127 AIRNVRRDANDKVKALLKDKEISEDDERRSQDDIQKLTDHFIKKVDEALAQKEAELMEF 185 >gi|253988128|ref|YP_003039484.1| ribosome recycling factor [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779578|emb|CAQ82739.1| ribosome recycling factor (ribosome-releasing factor) (rrf) [Photorhabdus asymbiotica] Length = 185 Score = 253 bits (647), Expect = 8e-66, Method: Composition-based stats. Identities = 78/179 (43%), Positives = 118/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ +DRM ++ LK + +RTGR SPS+LD + VE YG+ PL Q+ANVT + R L Sbjct: 7 KDAQDRMEKSVEALKNQISKVRTGRASPSLLDGITVEYYGAPTPLRQIANVTAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ M ++E+ I S+LGLNP G ++R+P+P TEERR L+KV AE+ ++ Sbjct: 67 ITVFDRSMTPAIEKAIMSSDLGLNPSSAGTIIRVPLPPLTEERRKDLIKVVRGEAEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRNIRRD D +K K + SED +++IQK+TD+ IK +D +K++E+M F Sbjct: 127 SVRNIRRDANDKIKALLKDKEISEDDERRAQDEIQKLTDNFIKKVDEALAKKEEELMEF 185 >gi|307942145|ref|ZP_07657496.1| ribosome recycling factor [Roseibium sp. TrichSKD4] gi|307774431|gb|EFO33641.1| ribosome recycling factor [Roseibium sp. TrichSKD4] Length = 187 Score = 253 bits (647), Expect = 8e-66, Method: Composition-based stats. Identities = 91/184 (49%), Positives = 132/184 (71%) Query: 3 QVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLE 62 + +DL ++ RM +S LK + LRTGR S SMLD + V+AYG +PLNQV V V E Sbjct: 4 EGVDLDDLSRRMQGALSVLKTEFSGLRTGRASASMLDPISVDAYGQSMPLNQVGTVNVPE 63 Query: 63 PRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 PRM+ + VWDK MV++VE+ I ESNLGLNP+V+GQ+LR+P+PE +ERR L+KVAH YA Sbjct: 64 PRMVAIQVWDKGMVSAVEKAIRESNLGLNPVVDGQLLRLPIPELNQERRQELIKVAHKYA 123 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 E++K+++R++RRDGMD KK+ K G S+D + +++QK+TD+ I +D+ +K++E Sbjct: 124 EQAKVAIRHVRRDGMDTAKKAEKDGDISQDDLHVASDEVQKLTDAKIAEVDTMLAKKEQE 183 Query: 183 IMHF 186 I Sbjct: 184 ISQV 187 >gi|108804238|ref|YP_644175.1| ribosome recycling factor [Rubrobacter xylanophilus DSM 9941] gi|123177371|sp|Q1AW65|RRF_RUBXD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|108765481|gb|ABG04363.1| ribosome recycling factor [Rubrobacter xylanophilus DSM 9941] Length = 186 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 76/186 (40%), Positives = 127/186 (68%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ VIDL + + RM + ++ T+RTGR +P++LD ++VEAYG+ +P+ VA++ Sbjct: 1 MSDVIDLSDAERRMKGALEAVRHQFATIRTGRANPALLDRIEVEAYGTRMPIKSVASIGA 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPR+L ++ +D ++ ++ER I +S+LGLNP +G+++R+P+PE TEERR L+++ Sbjct: 61 PEPRLLTITPYDPNLLKTIERAIRDSDLGLNPQNDGKIIRLPIPELTEERRRELIRLVRH 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE+ ++SVRN+RRD M +++ R+ G+ SED E ++QK+TD+ IK ID EK+ Sbjct: 121 MAEEGRVSVRNVRRDEMHDIQRLRREGEISEDDERRAEAELQKLTDAYIKRIDEALAEKE 180 Query: 181 KEIMHF 186 E+M Sbjct: 181 AELMEV 186 >gi|242240394|ref|YP_002988575.1| ribosome recycling factor [Dickeya dadantii Ech703] gi|242132451|gb|ACS86753.1| ribosome recycling factor [Dickeya dadantii Ech703] Length = 185 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 81/179 (45%), Positives = 116/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM + K + +RTGR SPS+LD + VE YGS PL Q+AN+ V + R L Sbjct: 7 KDAETRMDKCVEAFKSQIGKIRTGRASPSLLDGIHVEYYGSATPLRQLANIVVEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+V+D+ M +VE+ I S+LGLNP+ G V+R+P+P TEERR L+KV AE+ ++ Sbjct: 67 VTVFDRTMGPAVEKAIMASDLGLNPMSAGTVIRVPLPPLTEERRKDLIKVVRGDAEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRN+RRD D LK K SED +++IQK+TDS IK +D+ +K+KE+M F Sbjct: 127 SVRNVRRDANDKLKVLLKDKTISEDEERRAQDEIQKLTDSFIKKVDAALADKEKELMDF 185 >gi|229918658|ref|YP_002887304.1| ribosome recycling factor [Exiguobacterium sp. AT1b] gi|229470087|gb|ACQ71859.1| ribosome recycling factor [Exiguobacterium sp. AT1b] Length = 186 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 85/180 (47%), Positives = 122/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ +++M S LK+D TLRTGR S S+LD V+V+ YG PLNQVAN+ E R+L Sbjct: 7 LKTAEEKMEKAHSSLKRDFGTLRTGRASASILDPVQVDYYGVPTPLNQVANINTPEARLL 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WDK MV+ VE+ I +++LGL+P +G V+R+ +P TEERR LVK+ YAE++K Sbjct: 67 LIQPWDKSMVSEVEKAIQKADLGLSPSSDGTVIRLAIPALTEERRKELVKITKKYAEEAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RRD ++LKK K G+ +ED + +D+Q +TDS IK ID K+KEIM Sbjct: 127 VAVRNVRRDANENLKKLEKDGELTEDDLRGYADDVQTLTDSYIKKIDESAAIKEKEIMEV 186 >gi|251790742|ref|YP_003005463.1| ribosome recycling factor [Dickeya zeae Ech1591] gi|247539363|gb|ACT07984.1| ribosome recycling factor [Dickeya zeae Ech1591] Length = 185 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 82/179 (45%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM + K + +RTGR SPS+LD + VE YGS PL Q+AN+ V + R L Sbjct: 7 KDAETRMDKCVEAFKNQISKVRTGRASPSLLDGIHVEYYGSSTPLRQLANIVVEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+V+D+ + +VE+ I S+LGLNP+ G V+R+P+P TEERR L+KV AE+ ++ Sbjct: 67 VTVFDRTLGPAVEKAIMASDLGLNPMSAGTVIRVPLPPLTEERRKDLIKVVRGEAEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRN+RRD D LK K SED ++DIQK+TD IK ID+ EK+KE+M F Sbjct: 127 SVRNVRRDANDKLKAQLKDKTISEDEERRAQDDIQKLTDGFIKKIDAALAEKEKELMDF 185 >gi|226313032|ref|YP_002772926.1| ribosome recycling factor [Brevibacillus brevis NBRC 100599] gi|254809495|sp|C0ZF63|RRF_BREBN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226095980|dbj|BAH44422.1| ribosome recycling factor [Brevibacillus brevis NBRC 100599] Length = 185 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 75/180 (41%), Positives = 120/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++DRM I+ LK+D+ +LR GR +P+MLD V V+ YG+ P++Q+AN++V EPRML Sbjct: 6 LNDMEDRMNKAINALKRDLSSLRAGRANPAMLDRVTVDYYGTPTPISQLANISVPEPRML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK + ++R + +S+LG++P +G ++R+ +P TEERR LVK+A E++K Sbjct: 66 TIQPWDKTALKEIDRALQQSDLGISPSNDGVIIRLIIPPLTEERRKELVKLAGKGGEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD D +KK K+ SED + IQK TD I +D ++K+K+I+ Sbjct: 126 VAIRNIRRDANDEIKKLEKAATISEDDSRRHQETIQKTTDKFIAEVDKIVKDKEKDILEV 185 >gi|332976811|gb|EGK13639.1| ribosome recycling factor [Desmospora sp. 8437] Length = 185 Score = 252 bits (645), Expect = 1e-65, Method: Composition-based stats. Identities = 84/179 (46%), Positives = 118/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ RM I LK+++ ++R GR +PS+LD V VE YGS +PLNQ+AN++ EPR+LV Sbjct: 7 EDANQRMEKAIQALKRELASIRAGRATPSLLDKVTVECYGSEMPLNQLANISTPEPRLLV 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V WDK + VER I +S+LGL P +G ++RI +P TEERR LVKV E++K+ Sbjct: 67 VQPWDKSTLGDVERAILKSDLGLTPNNDGNLIRITIPALTEERRGELVKVVKKTGEEAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD D +KK K G+ SED +++IQK+TD I+ D E K+KEIM Sbjct: 127 AIRNIRRDANDEMKKLEKKGELSEDEARRGQDEIQKLTDRFIQETDKVVETKEKEIMEV 185 >gi|261344733|ref|ZP_05972377.1| ribosome recycling factor [Providencia rustigianii DSM 4541] gi|282567175|gb|EFB72710.1| ribosome recycling factor [Providencia rustigianii DSM 4541] Length = 185 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 82/179 (45%), Positives = 118/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ +DRM ++ LK + +RTGR SPS+LD + VE YGS PL Q+ANVTV + R L Sbjct: 7 KDAQDRMEKSLEALKSQISKIRTGRASPSLLDGIVVEYYGSATPLRQLANVTVEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +SV+D+ M ++E+ I S+LGLNP G V+R+P+P TEERR L+KV AE+ +I Sbjct: 67 ISVFDRSMSPAIEKAIMASDLGLNPSSAGTVIRVPLPALTEERRKDLIKVVRGEAEQGRI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD D +K K + SED ++DIQK+TDS IK +D +K+ E+M F Sbjct: 127 AIRNVRRDANDKVKALLKDKEISEDDERRSQDDIQKLTDSFIKKVDEALAQKEAELMEF 185 >gi|219669723|ref|YP_002460158.1| ribosome recycling factor [Desulfitobacterium hafniense DCB-2] gi|254809508|sp|B8FRG2|RRF_DESHD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|219539983|gb|ACL21722.1| ribosome recycling factor [Desulfitobacterium hafniense DCB-2] Length = 185 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 83/180 (46%), Positives = 118/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ +DRM + LK++ T+R GR +P+MLD + VE YG+ P+NQ+AN++V EPRML Sbjct: 6 LKEAEDRMVKAVEALKREYATIRAGRANPNMLDKITVEYYGTQTPVNQLANISVPEPRML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK + +E+ I +S+LGLNP +G V+R+ +P+ T ERR +VK AE S+ Sbjct: 66 TIQPWDKSSLPMIEKAILKSDLGLNPSSDGTVIRLLIPQLTAERRTEIVKTVKKKAEDSR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD D LKK K ASED V ++D+QK+TD +K ID K+KEIM Sbjct: 126 VAVRNIRRDSNDELKKLEKDHTASEDEVKRAQDDVQKMTDKFVKEIDRIMGTKEKEIMEV 185 >gi|253573556|ref|ZP_04850899.1| ribosome recycling factor [Paenibacillus sp. oral taxon 786 str. D14] gi|251847084|gb|EES75089.1| ribosome recycling factor [Paenibacillus sp. oral taxon 786 str. D14] Length = 184 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 78/186 (41%), Positives = 118/186 (63%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M Q I ++ ++RM I L++D+ TLR GR +PS+LD ++V+ YGS P+NQ+AN+ Sbjct: 1 MPQTIK-KHAEERMEKAIQALRRDLSTLRAGRATPSLLDRIQVDYYGSPTPINQLANINT 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R L++ WDK ++ +ER I +S+LGL P +G +R+ +P TEERR+ LVK+ Sbjct: 60 PDSRTLLIQPWDKSSLSEIERAIQKSDLGLTPANDGSSIRLTIPALTEERRIELVKMTKK 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 + E++K+++RNIRRD D +KK K+ SED + DIQK TD I +D K+ Sbjct: 120 FGEEAKVAIRNIRRDANDDIKKLEKT-DISEDESRRHQEDIQKTTDKFIAEVDKVLAAKE 178 Query: 181 KEIMHF 186 KEIM Sbjct: 179 KEIMEV 184 >gi|290473660|ref|YP_003466532.1| ribosome releasing factor [Xenorhabdus bovienii SS-2004] gi|289172965|emb|CBJ79736.1| ribosome releasing factor [Xenorhabdus bovienii SS-2004] Length = 205 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 78/179 (43%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ +DRM ++ LK + +RTGR SPS+LD + V+ YGS PL Q+A+V + R L Sbjct: 27 KDAQDRMEKSVEALKNQISKIRTGRASPSLLDGISVDYYGSATPLRQIASVVAEDARTLA 86 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ M ++E+ I S+LGLNP G ++R+P+P TEERR L+KV AE+ ++ Sbjct: 87 ITVFDRSMTPAIEKAIMASDLGLNPSSAGTIIRVPLPALTEERRKDLIKVVRGDAEQGRV 146 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRNIRRD D +K K + SED +++IQK+TDS IK ID K+ E+M F Sbjct: 147 SVRNIRRDANDKVKALLKDKEISEDEERRSQDEIQKLTDSFIKKIDEALASKETELMDF 205 >gi|170738972|ref|YP_001767627.1| ribosome recycling factor [Methylobacterium sp. 4-46] gi|190360253|sp|B0UPZ4|RRF_METS4 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|168193246|gb|ACA15193.1| ribosome recycling factor [Methylobacterium sp. 4-46] Length = 187 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 90/182 (49%), Positives = 131/182 (71%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 DL +IK RM ++ LK D+ +LRTGR SP++LD ++VEAYG+ +P+ QVA ++V EPR Sbjct: 6 FDLADIKRRMQGAVNSLKHDLGSLRTGRASPTLLDPIQVEAYGAAMPMAQVATISVPEPR 65 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 +L V+VWD+ MV++VE+ I ES+LGLNP+ EGQ +R+ +PE E+RR +VKVAH YAE+ Sbjct: 66 LLSVAVWDRGMVSAVEKAIRESDLGLNPMTEGQTIRLRIPEMNEQRRKEMVKVAHKYAEE 125 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++++VR++RRDG+D LKK K G S+D + +QK+TD I +D K+KEIM Sbjct: 126 ARVAVRHVRRDGLDLLKKLEKDGAISQDDEKRQADQVQKVTDQHIAEVDQTLAAKEKEIM 185 Query: 185 HF 186 Sbjct: 186 QV 187 >gi|297584070|ref|YP_003699850.1| ribosome recycling factor [Bacillus selenitireducens MLS10] gi|297142527|gb|ADH99284.1| ribosome recycling factor [Bacillus selenitireducens MLS10] Length = 185 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 76/180 (42%), Positives = 120/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+N ++RM ++ +++ ++R GR +PS+LD V+VE YG PLNQ+A ++V E R+L Sbjct: 6 LKNAEERMNKSLESFGRELGSVRAGRANPSILDRVQVEYYGMMTPLNQLATISVPEGRLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV +DK + +E+ I +++LGL+P +G ++RI +P TEERR L+KV YAE +K Sbjct: 66 VVQPFDKSSLPDIEKAIQKADLGLSPSNDGNIIRISIPALTEERRKELIKVVGRYAEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RRD D LKK K G+ +ED + ++D+QK+TD IK ID + K+ +I Sbjct: 126 VAVRNVRRDANDELKKLEKDGEMTEDELRRGQDDVQKLTDDYIKKIDERVKAKENDIKEV 185 >gi|317484674|ref|ZP_07943575.1| ribosome recycling factor [Bilophila wadsworthia 3_1_6] gi|316924030|gb|EFV45215.1| ribosome recycling factor [Bilophila wadsworthia 3_1_6] Length = 186 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 72/186 (38%), Positives = 115/186 (61%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M++ L + +DRM + L +D LRTGR S ++D +KV+ YG+ P++Q+A+V + Sbjct: 1 MDKESVLLDSEDRMDKALGALDRDFSRLRTGRASTGLVDNIKVDYYGTPTPISQLASVAI 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R + + WD+ A VE+ I +S+LGL P+ +G+++RI +P TE+RR L K+A Sbjct: 61 PDSRTITIQPWDRGAFAGVEKAILKSDLGLTPVNDGKIIRISIPPLTEDRRKELGKLARK 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E++K++VRN+RRD D LKK K SED + +D+QK+TD + +D K+ Sbjct: 121 SGEEAKVAVRNVRRDANDQLKKLEKDKAISEDELKKATDDVQKLTDRYVAKVDEKCAAKE 180 Query: 181 KEIMHF 186 KEIM Sbjct: 181 KEIMDL 186 >gi|225181371|ref|ZP_03734815.1| ribosome recycling factor [Dethiobacter alkaliphilus AHT 1] gi|225167952|gb|EEG76759.1| ribosome recycling factor [Dethiobacter alkaliphilus AHT 1] Length = 185 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 84/179 (46%), Positives = 123/179 (68%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++RM +S LK+D+ TLR GR +PS+LD + V+ YGS +P+NQ+ANV+ EPR+LV Sbjct: 7 SDAQERMEKAVSALKRDLATLRAGRATPSLLDKIVVDYYGSSMPINQLANVSTPEPRLLV 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + WDK VA VER I +S+LGL P+ +G ++R+ +P+ TEERR LVKV+ AE ++ Sbjct: 67 IQPWDKNAVAEVERAILKSDLGLTPVSDGSIIRLAIPQLTEERRKELVKVSKKKAEDGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RNIRRD + LK+ K + +ED + ++DIQK+TD I DS + K+KEIM Sbjct: 127 SIRNIRRDANEDLKRLEKDNEITEDELHKAQDDIQKLTDKFIAEADSVLDAKEKEIMEV 185 >gi|27379969|ref|NP_771498.1| ribosome recycling factor [Bradyrhizobium japonicum USDA 110] gi|34924950|sp|Q89KP6|RRF_BRAJA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|27353122|dbj|BAC50123.1| ribosome recycling factor [Bradyrhizobium japonicum USDA 110] Length = 188 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 98/182 (53%), Positives = 128/182 (70%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 DL +K RM + LK ++ LRTGR S SMLD V+VEAYGSH+PLNQ+A V+V EPR Sbjct: 7 FDLNEVKRRMQGAVQSLKHELGGLRTGRASASMLDPVQVEAYGSHMPLNQLATVSVPEPR 66 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 ++ V VWDK MV +VE+ I +SNLGL+P EGQVLR+ +PE EERR LVKVAH YAE Sbjct: 67 LISVQVWDKSMVKAVEKAIVDSNLGLSPATEGQVLRLRIPELNEERRKELVKVAHKYAEA 126 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +K++ R++RRDG+D LKK K+ + SED +++QK+TD TI ID K+KEI+ Sbjct: 127 AKVAARHVRRDGLDVLKKLEKNHEMSEDDQKRHADEVQKVTDGTIAEIDQLLAAKEKEIL 186 Query: 185 HF 186 Sbjct: 187 TV 188 >gi|163795639|ref|ZP_02189605.1| Ribosome recycling factor [alpha proteobacterium BAL199] gi|159179238|gb|EDP63771.1| Ribosome recycling factor [alpha proteobacterium BAL199] Length = 185 Score = 251 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 92/182 (50%), Positives = 129/182 (70%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 +DL +I+ RM + L+ + LRTGR S S+L+ + VEAYGS +PLNQVA ++V EPR Sbjct: 4 LDLDDIERRMDGAVVALRAEFSGLRTGRASASLLEPIHVEAYGSRMPLNQVATISVPEPR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ V VWD+ M +VE+ I ES+LGLNP +GQ++R+P+P+ +EERR LVKVA YAE Sbjct: 64 MISVQVWDRAMSKAVEKAIRESDLGLNPQSDGQLIRVPLPDLSEERRTELVKVASKYAES 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++++VRN+RRDGMDHLKK+ K G S+D E++IQ+ TD +K ID K+K+IM Sbjct: 124 ARVAVRNVRRDGMDHLKKAEKDGDVSQDERRLYEDEIQEQTDKHVKAIDEALASKEKDIM 183 Query: 185 HF 186 Sbjct: 184 QV 185 >gi|150396353|ref|YP_001326820.1| ribosome recycling factor [Sinorhizobium medicae WSM419] gi|166231511|sp|A6U8K5|RRF_SINMW RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|150027868|gb|ABR59985.1| ribosome recycling factor [Sinorhizobium medicae WSM419] Length = 186 Score = 251 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 110/186 (59%), Positives = 137/186 (73%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M++ +DL+ +K RM IS K D+ +LRTGR S ++LD V VEAYGS +PLNQVAN+TV Sbjct: 1 MSEGVDLKELKRRMDGAISAFKHDIASLRTGRASANVLDPVTVEAYGSRMPLNQVANITV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E RML VSVWDK MV +VER I ESNLGLNPIV+GQ LRIP+PE EERR +LVKVAH Sbjct: 61 PEARMLSVSVWDKSMVGAVERAIRESNLGLNPIVDGQNLRIPLPELNEERRKSLVKVAHD 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAEKSK++VR++RRDGMD LKK+ K G+ +D + +QK+TD I ID +K+ Sbjct: 121 YAEKSKVAVRHVRRDGMDDLKKAEKDGEIGQDESRAQSERVQKMTDDVISEIDRLLADKE 180 Query: 181 KEIMHF 186 KEIM Sbjct: 181 KEIMQV 186 >gi|52785632|ref|YP_091461.1| ribosome recycling factor [Bacillus licheniformis ATCC 14580] gi|163119440|ref|YP_079046.2| ribosome recycling factor [Bacillus licheniformis ATCC 14580] gi|319645965|ref|ZP_08000195.1| ribosome-recycling factor [Bacillus sp. BT1B_CT2] gi|60390243|sp|Q65JJ6|RRF_BACLD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|52348134|gb|AAU40768.1| Frr [Bacillus licheniformis ATCC 14580] gi|145902947|gb|AAU23408.2| ribosome recycling factor [Bacillus licheniformis ATCC 14580] gi|317391715|gb|EFV72512.1| ribosome-recycling factor [Bacillus sp. BT1B_CT2] Length = 185 Score = 251 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 79/180 (43%), Positives = 121/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + K+RM IS ++++ T+R GR +PS+LD V VE YG+ PLNQ+A++TV E RML Sbjct: 6 MNETKERMQKAISAYQRELATVRAGRANPSLLDKVAVEYYGAQTPLNQIASITVPEARML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V++ +DK + +E+ I +++LG+ P +G ++RI +P TEERR L K+ Y+E +K Sbjct: 66 VITPYDKTALGDIEKAIQKADLGVTPSNDGNIIRITIPPLTEERRKELAKLVKKYSEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD D LKK K+G+ +ED + S D+QK+TD + ID ++K+KEIM Sbjct: 126 VAVRNIRRDANDDLKKLEKNGEMTEDELRSSTEDVQKLTDEYVSKIDEITKDKEKEIMEV 185 >gi|15614987|ref|NP_243290.1| ribosome recycling factor [Bacillus halodurans C-125] gi|14195173|sp|Q9KA66|RRF_BACHD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|10175044|dbj|BAB06143.1| ribosome recycling factor [Bacillus halodurans C-125] Length = 185 Score = 251 bits (643), Expect = 3e-65, Method: Composition-based stats. Identities = 80/180 (44%), Positives = 117/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + + RM L +++ LR GR +P+MLD + VE YG+ PLNQ+A ++V E R+L Sbjct: 6 LNDAEQRMTKATEALGRELAKLRAGRANPAMLDRITVEYYGAETPLNQLATISVPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +DK ++ +ER I +S+LGL P +G V+RI +P TEERR L K+ AE++K Sbjct: 66 VIQPFDKSSISDIERAIQKSDLGLTPSNDGTVIRITIPPLTEERRRDLTKLVKKSAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD D LKK +K G+ +ED + + D+QK+TD I+ ID E K+KEIM Sbjct: 126 VAVRNIRRDANDDLKKRQKDGELTEDDLRRVTEDVQKLTDKYIEQIDQKAEAKEKEIMEV 185 >gi|239826646|ref|YP_002949270.1| ribosome recycling factor [Geobacillus sp. WCH70] gi|259494544|sp|C5D9B8|RRF_GEOSW RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|239806939|gb|ACS24004.1| ribosome recycling factor [Geobacillus sp. WCH70] Length = 185 Score = 251 bits (643), Expect = 3e-65, Method: Composition-based stats. Identities = 74/180 (41%), Positives = 118/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + K++M + +++ T+R GR +PS+L+ V V+ YG P+ Q+A+++V E R+L Sbjct: 6 INTAKEKMDKAVQAFTRELATIRAGRANPSLLEKVTVDYYGMPTPIIQLASISVPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +DK ++ +E+ I S+LGL P +G V+RI +P TEERR LVK+ Y+E +K Sbjct: 66 VIQPYDKSVIKDIEKAILSSDLGLTPSNDGSVIRITIPPLTEERRRELVKLVKKYSEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD D LKK K+G+ +ED + +D+QK+TD I ID+ +EK+KE+M Sbjct: 126 VAVRNIRRDANDELKKLEKNGEITEDELRGYTDDVQKLTDDHIAKIDAITKEKEKEVMEV 185 >gi|220921531|ref|YP_002496832.1| ribosome recycling factor [Methylobacterium nodulans ORS 2060] gi|254809520|sp|B8INK3|RRF_METNO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|219946137|gb|ACL56529.1| ribosome recycling factor [Methylobacterium nodulans ORS 2060] Length = 187 Score = 251 bits (642), Expect = 3e-65, Method: Composition-based stats. Identities = 89/182 (48%), Positives = 132/182 (72%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 DL ++K RM ++ LK D+ +LRTGR SP++LD +++EAYG+ +P+ QVA ++V EPR Sbjct: 6 FDLADLKRRMQGAVNALKHDLGSLRTGRASPTLLDPIQIEAYGAVMPMAQVATISVPEPR 65 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 +L V+VWD+ MV++VE+ I ES+LGLNP+ EGQ +R+ +PE +E+RR +VKVAH YAE+ Sbjct: 66 LLSVAVWDRGMVSAVEKAIRESDLGLNPMTEGQTIRLRIPEMSEQRRKEMVKVAHKYAEE 125 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++++VR++RRDG+D LKK K G S+D + +QKITD I +D K+KEIM Sbjct: 126 ARVAVRHVRRDGLDLLKKLEKDGAISQDDEKRQADQVQKITDQHIAEVDQTLAAKEKEIM 185 Query: 185 HF 186 Sbjct: 186 QV 187 >gi|271499498|ref|YP_003332523.1| ribosome recycling factor [Dickeya dadantii Ech586] gi|270343053|gb|ACZ75818.1| ribosome recycling factor [Dickeya dadantii Ech586] Length = 185 Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats. Identities = 80/179 (44%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM + K + +RTGR SP++LD + VE YGS PL Q+AN+ V + R L Sbjct: 7 KDAETRMDKCVEAFKNQISKVRTGRASPTLLDGIHVEYYGSATPLRQLANIVVEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+V+D+ + +VE+ I S+LGLNP+ G V+R+P+P TEERR L+KV AE+ ++ Sbjct: 67 VTVFDRTLGPAVEKAIMASDLGLNPMSAGTVIRVPLPPLTEERRKDLIKVVRGEAEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRN+RRD D LK K SED ++D+QK+TD IK ID+ EK+KE+M F Sbjct: 127 SVRNVRRDANDKLKAQLKDKTISEDEERRAQDDVQKLTDGFIKKIDAALAEKEKELMDF 185 >gi|212639532|ref|YP_002316052.1| ribosome recycling factor [Anoxybacillus flavithermus WK1] gi|212561012|gb|ACJ34067.1| Ribosome recycling factor [Anoxybacillus flavithermus WK1] Length = 183 Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats. Identities = 76/180 (42%), Positives = 117/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L N K++M + +++ T+R GR +P++L+ + V+ YG P+ Q+A + V E R+L Sbjct: 4 LTNAKEKMDKAVQAFSRELATIRAGRANPALLEKITVDYYGMPTPIIQLAGIQVPEARLL 63 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +DK ++ +E+ I S+LGL P +G V+RI +P TEERR LVK+ YAE++K Sbjct: 64 VIQPYDKSVLKEIEKAILASDLGLTPSNDGSVIRISIPPLTEERRRELVKLVKKYAEEAK 123 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD D LKK K+G+ +ED + DIQK+TD I ID+ +EK+KE+M Sbjct: 124 VAVRNIRRDANDELKKLEKNGEITEDELRGYTEDIQKLTDDHIAKIDAITKEKEKEVMEV 183 >gi|15965251|ref|NP_385604.1| ribosome recycling factor [Sinorhizobium meliloti 1021] gi|307309274|ref|ZP_07588942.1| ribosome recycling factor [Sinorhizobium meliloti BL225C] gi|307317016|ref|ZP_07596457.1| ribosome recycling factor [Sinorhizobium meliloti AK83] gi|22001945|sp|Q92Q52|RRF_RHIME RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|15074431|emb|CAC46077.1| Probable ribosome recycling factor (ribosome releasing factor) [Sinorhizobium meliloti 1021] gi|306897104|gb|EFN27849.1| ribosome recycling factor [Sinorhizobium meliloti AK83] gi|306900275|gb|EFN30892.1| ribosome recycling factor [Sinorhizobium meliloti BL225C] Length = 186 Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats. Identities = 110/186 (59%), Positives = 137/186 (73%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M++ +DL+ +K RM I+ K D+ +LRTGR S ++LD V VEAYGS +PLNQVAN+TV Sbjct: 1 MSEGVDLKELKRRMDGAIAAFKHDIASLRTGRASANVLDPVTVEAYGSRMPLNQVANITV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E RML VSVWDK MV +VER I ESNLGLNPIV+GQ LRIP+PE EERR +LVKVAH Sbjct: 61 PESRMLSVSVWDKSMVGAVERAIRESNLGLNPIVDGQNLRIPLPELNEERRKSLVKVAHD 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAEKSK++VR++RRDGMD LKK+ K G+ +D + +QK+TD I ID EK+ Sbjct: 121 YAEKSKVAVRHVRRDGMDDLKKAEKDGEIGQDESRAQSERVQKMTDDVISEIDRLLAEKE 180 Query: 181 KEIMHF 186 KEIM Sbjct: 181 KEIMQV 186 >gi|90419595|ref|ZP_01227505.1| ribosome recycling factor [Aurantimonas manganoxydans SI85-9A1] gi|90336532|gb|EAS50273.1| ribosome recycling factor [Aurantimonas manganoxydans SI85-9A1] Length = 185 Score = 251 bits (641), Expect = 4e-65, Method: Composition-based stats. Identities = 103/182 (56%), Positives = 129/182 (70%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 +DL +K RM I+ LK D+ LRTGR SPS+LD + V+AYGS +PLNQVANV+V EPR Sbjct: 4 MDLNELKRRMDGAITSLKSDLTGLRTGRASPSLLDPIYVDAYGSKMPLNQVANVSVPEPR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ V+VWDK+MV VER I ESNLGLNPI +G LRIP+PE E+RR LVKVAH YAE Sbjct: 64 MVTVTVWDKQMVGKVERAIRESNLGLNPITDGATLRIPLPELNEQRRKELVKVAHQYAEG 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +K++VR++RRDGM+ LKK K G +D + +QK+TD TI IDS K+ EIM Sbjct: 124 AKVAVRHVRRDGMETLKKLEKDGDIGQDESRQQSDRVQKMTDETISEIDSALAVKEAEIM 183 Query: 185 HF 186 Sbjct: 184 QV 185 >gi|120603155|ref|YP_967555.1| ribosome recycling factor [Desulfovibrio vulgaris DP4] gi|166230784|sp|A1VFB2|RRF_DESVV RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|120563384|gb|ABM29128.1| ribosome recycling factor [Desulfovibrio vulgaris DP4] Length = 186 Score = 251 bits (641), Expect = 4e-65, Method: Composition-based stats. Identities = 75/186 (40%), Positives = 121/186 (65%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ L + ++RM I+ L+++ LRTGR S S++D +KV+ YG+ P++QVA+V V Sbjct: 1 MDMESILLDAEERMEKAIAALEREFSRLRTGRASASLVDGIKVDYYGTPTPISQVASVAV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R + + WD+ + +E+ I +S+LGLNP+ +G+++RI +P TEERR L K+A Sbjct: 61 PDSRCITIQPWDRNAFSLIEKAILKSDLGLNPVNDGKIIRINIPPLTEERRKDLGKMARK 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE++K++VRN+RRD + LKK K+ + SED + + D+QK+TD + D K+ Sbjct: 121 YAEEAKVAVRNVRRDANEQLKKLEKNKELSEDDLRKAQEDVQKLTDRFVAKTDEKAGAKE 180 Query: 181 KEIMHF 186 KEIM Sbjct: 181 KEIMDI 186 >gi|78356175|ref|YP_387624.1| ribosome recycling factor [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|123552884|sp|Q313G7|RRF_DESDG RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|78218580|gb|ABB37929.1| ribosome recycling factor [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 184 Score = 251 bits (641), Expect = 4e-65, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 116/180 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++RM ++ L ++ LRTGR S S++D +KV+ YG+ P+NQ+A+V V + R + Sbjct: 5 LLETEERMEKAVAALDREFGRLRTGRASTSLVDSIKVDYYGTPTPINQLASVAVPDSRTI 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WD+ A VE+ I +S+LGL PI +G+++RI +P TEERR LVKVA Y E +K Sbjct: 65 TIQPWDRGAFALVEKAIMQSDLGLTPINDGKIIRISMPPLTEERRKELVKVAKKYTEDAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD + +KK K +ED + ++++QK+TD+ + + +K+KEIM Sbjct: 125 VAVRNIRRDANEQIKKMEKDKAITEDDMKRGQDEVQKLTDAFVAKSEKVLAKKEKEIMEV 184 >gi|85716993|ref|ZP_01047956.1| ribosome recycling factor [Nitrobacter sp. Nb-311A] gi|85696195|gb|EAQ34090.1| ribosome recycling factor [Nitrobacter sp. Nb-311A] Length = 187 Score = 251 bits (641), Expect = 5e-65, Method: Composition-based stats. Identities = 99/182 (54%), Positives = 128/182 (70%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D+ ++K RM LK ++ LRTGR S SMLD V+V+AYGSH+PLNQVA ++V EPR Sbjct: 6 FDIGDLKRRMQGATQSLKHELGGLRTGRASASMLDPVQVDAYGSHMPLNQVATISVPEPR 65 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 +L V VWDK MV +VE+ I +SNLGL+P EGQVLR+ +PE EERR LVKVAH YAE Sbjct: 66 LLSVQVWDKSMVKAVEKAIVDSNLGLSPATEGQVLRLRIPELNEERRKELVKVAHKYAEA 125 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +K++VR++RRDG+D LKK K+ + SED L N++QK TD I ID K+KEI+ Sbjct: 126 AKVAVRHVRRDGLDTLKKLEKTHEISEDDEKRLANEVQKATDGVISEIDQLLAGKEKEIL 185 Query: 185 HF 186 Sbjct: 186 TV 187 >gi|75676047|ref|YP_318468.1| ribosome recycling factor [Nitrobacter winogradskyi Nb-255] gi|123613278|sp|Q3SRH5|RRF_NITWN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|74420917|gb|ABA05116.1| ribosome recycling factor [Nitrobacter winogradskyi Nb-255] Length = 187 Score = 251 bits (641), Expect = 5e-65, Method: Composition-based stats. Identities = 101/182 (55%), Positives = 129/182 (70%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D+ ++K RM LK ++ LRTGR S SMLD V+V+AYGSH+PLNQVA ++V EPR Sbjct: 6 FDIGDLKRRMQGATQSLKHELGGLRTGRASSSMLDPVQVDAYGSHMPLNQVATISVPEPR 65 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 +L V VWDK MV +VE+ I +SNLGL+P EGQVLR+ +PE EERR LVKVAH YAE Sbjct: 66 LLSVQVWDKSMVKAVEKAIVDSNLGLSPATEGQVLRLRIPELNEERRKELVKVAHKYAEA 125 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +K++VR++RRDG+D LKK K+ + SED L ND+QK TDS I ID K+KEI+ Sbjct: 126 AKVAVRHVRRDGLDTLKKLEKNHEISEDDEKRLANDVQKATDSVISEIDQLLAGKEKEIL 185 Query: 185 HF 186 Sbjct: 186 TV 187 >gi|288553032|ref|YP_003424967.1| ribosome recycling factor [Bacillus pseudofirmus OF4] gi|288544192|gb|ADC48075.1| ribosome recycling factor [Bacillus pseudofirmus OF4] Length = 185 Score = 251 bits (641), Expect = 5e-65, Method: Composition-based stats. Identities = 80/180 (44%), Positives = 121/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q+ K+RM I L +++ LR GR +P++LD V VE YG+ PLNQ+A +TV E R+L Sbjct: 6 MQDAKERMTKAIESLNRELAKLRAGRANPAILDRVTVEYYGAETPLNQLATITVPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +DK + +ER I +++LGL P +G V+RI +P TEERR LVK+ AE+ K Sbjct: 66 MIQPFDKTSMNDIERAIQKADLGLTPSNDGTVIRIAIPPLTEERRRELVKLVKKSAEEGK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RRD D LKK +K G+ +ED + +D+QK+TD I +ID+ ++K+KEIM Sbjct: 126 VAVRNVRRDANDDLKKLQKDGEMTEDELRRYTDDVQKLTDKHISDIDAVADKKEKEIMEV 185 >gi|302342180|ref|YP_003806709.1| ribosome recycling factor [Desulfarculus baarsii DSM 2075] gi|301638793|gb|ADK84115.1| ribosome recycling factor [Desulfarculus baarsii DSM 2075] Length = 185 Score = 251 bits (641), Expect = 5e-65, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 111/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 K+RM I LK+D +RTGR +P++LD V+ + YG PLNQ+A ++V E R++V Sbjct: 7 NEAKERMHKAIEALKRDFSRVRTGRATPTILDGVRADYYGQPTPLNQMAGISVPEARLIV 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + WD + +E+ I S+LGL P +G+V+RI P T+ERR L K+ AE++K+ Sbjct: 67 IQPWDPKSCELIEKAILASDLGLTPQSDGKVVRINFPPLTQERRKDLAKLVRKMAEEAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VR RRD + LK+ +K G+ SED + +IQK TD IK +D EK+KEIM F Sbjct: 127 AVRAARRDANEMLKEFKKEGEISEDDAFRGQEEIQKTTDDFIKKVDETLAEKEKEIMEF 185 >gi|89895289|ref|YP_518776.1| hypothetical protein DSY2543 [Desulfitobacterium hafniense Y51] gi|122482357|sp|Q24UG0|RRF_DESHY RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|89334737|dbj|BAE84332.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 185 Score = 250 bits (640), Expect = 5e-65, Method: Composition-based stats. Identities = 82/180 (45%), Positives = 118/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ +DRM + LK++ T+R GR +P+MLD + VE YG+ P+NQ+AN++V EPRML Sbjct: 6 LKEAEDRMVKAVEALKREYATIRAGRANPNMLDKITVEYYGTQTPVNQLANISVPEPRML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK + +E+ I +S+LGLNP +G V+R+ +P+ T ERR +VK AE S+ Sbjct: 66 TIQPWDKSSLPMIEKAILKSDLGLNPSSDGTVIRLLIPQLTAERRTEIVKTVKKKAEDSR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD D LKK K ASED V ++D+QK+TD +K I+ K+KEIM Sbjct: 126 VAVRNIRRDSNDELKKLEKDHTASEDEVKRAQDDVQKMTDKFVKEIERIMGTKEKEIMEV 185 >gi|42782915|ref|NP_980162.1| ribosome recycling factor [Bacillus cereus ATCC 10987] gi|206978510|ref|ZP_03239367.1| ribosome recycling factor [Bacillus cereus H3081.97] gi|217961244|ref|YP_002339812.1| ribosome recycling factor [Bacillus cereus AH187] gi|229140465|ref|ZP_04269020.1| Ribosome-recycling factor [Bacillus cereus BDRD-ST26] gi|229197934|ref|ZP_04324650.1| Ribosome-recycling factor [Bacillus cereus m1293] gi|60390260|sp|Q732P5|RRF_BACC1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226703254|sp|B7HLF7|RRF_BACC7 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|42738842|gb|AAS42770.1| ribosome recycling factor [Bacillus cereus ATCC 10987] gi|206743279|gb|EDZ54729.1| ribosome recycling factor [Bacillus cereus H3081.97] gi|217063331|gb|ACJ77581.1| ribosome recycling factor [Bacillus cereus AH187] gi|228585652|gb|EEK43754.1| Ribosome-recycling factor [Bacillus cereus m1293] gi|228643026|gb|EEK99302.1| Ribosome-recycling factor [Bacillus cereus BDRD-ST26] gi|324327721|gb|ADY22981.1| ribosome recycling factor [Bacillus thuringiensis serovar finitimus YBT-020] Length = 185 Score = 250 bits (640), Expect = 6e-65, Method: Composition-based stats. Identities = 78/180 (43%), Positives = 119/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ ++M ++ +++ T+R GR + S+LD V+V+ YG+ P+ Q+AN+TV E R+L Sbjct: 6 LKSANEKMEKAVAAYSRELATVRAGRANASVLDKVQVDYYGAPTPVVQLANITVPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +DK + +E+ I +++LGLNP +G V+RI P TEERR LVKV YAE++K Sbjct: 66 VIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RRDG D LKK K+G+ +ED + DIQK TD I +D + K+KEIM Sbjct: 126 VAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIMEV 185 >gi|46579283|ref|YP_010091.1| ribosome recycling factor [Desulfovibrio vulgaris str. Hildenborough] gi|60390259|sp|Q72DQ9|RRF_DESVH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|46448697|gb|AAS95350.1| ribosome recycling factor [Desulfovibrio vulgaris str. Hildenborough] gi|311233111|gb|ADP85965.1| ribosome recycling factor [Desulfovibrio vulgaris RCH1] Length = 186 Score = 250 bits (640), Expect = 6e-65, Method: Composition-based stats. Identities = 75/186 (40%), Positives = 121/186 (65%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ L + ++RM I+ L+++ LRTGR S S++D +KV+ YG+ P++QVA+V V Sbjct: 1 MDMDSILLDAEERMEKAIAALEREFSRLRTGRASASLVDGIKVDYYGTPTPISQVASVAV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R + + WD+ + +E+ I +S+LGLNP+ +G+++RI +P TEERR L K+A Sbjct: 61 PDSRCITIQPWDRNAFSLIEKAILKSDLGLNPVNDGKIIRINIPPLTEERRKDLGKMARK 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE++K++VRN+RRD + LKK K+ + SED + + D+QK+TD + D K+ Sbjct: 121 YAEEAKVAVRNVRRDANEQLKKLEKNKELSEDDLRKAQEDVQKLTDRFVAKTDEKAGAKE 180 Query: 181 KEIMHF 186 KEIM Sbjct: 181 KEIMDI 186 >gi|220903796|ref|YP_002479108.1| ribosome recycling factor [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868095|gb|ACL48430.1| ribosome recycling factor [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 186 Score = 250 bits (640), Expect = 6e-65, Method: Composition-based stats. Identities = 72/180 (40%), Positives = 114/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +DRM ++ L +D LRTGR + +++D +K + YG+ P++Q+A++ V + R L Sbjct: 7 LLDAEDRMEKALAALDRDFAKLRTGRATTALVDGIKADYYGTPTPISQMASIAVPDSRTL 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK +A +E+ I +S+LGL P+ +G+++RI +P TEERR L KVA Y+E+ K Sbjct: 67 TIQPWDKGGIALIEKAILKSDLGLTPVNDGKLIRIVMPPLTEERRKELSKVARKYSEEGK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RRD D LKK K +ED +D+QK+TD + +D K+KEIM Sbjct: 127 VAVRNVRRDANDSLKKLEKEKTITEDEQKRATDDVQKLTDKYVAEVDKRCAAKEKEIMEI 186 >gi|218288327|ref|ZP_03492626.1| ribosome recycling factor [Alicyclobacillus acidocaldarius LAA1] gi|218241686|gb|EED08859.1| ribosome recycling factor [Alicyclobacillus acidocaldarius LAA1] Length = 187 Score = 250 bits (640), Expect = 6e-65, Method: Composition-based stats. Identities = 82/180 (45%), Positives = 126/180 (70%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +QN+++RM I L+++ T+R GR +PSMLD V VE YG+ +P+NQVA+VT EPR+L Sbjct: 8 IQNLQERMDKAIQNLRREFATVRAGRAAPSMLDHVMVEYYGAQMPVNQVASVTSPEPRLL 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+S WDK M++ +E+ I +S+LGLNP +G V+R+ +P TE+RR LVK AE+++ Sbjct: 68 VISPWDKSMLSEIEKAIQKSDLGLNPANDGNVIRLTIPALTEQRRQELVKQVRKMAEEAR 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRDG + +KK K+G SED V L + +Q++TD I +D E+K+K++ Sbjct: 128 VAIRNIRRDGNEEIKKLEKAGDISEDDVRRLMDRVQQLTDKAIAQVDRLLEDKEKDVTQV 187 >gi|56419787|ref|YP_147105.1| ribosome recycling factor [Geobacillus kaustophilus HTA426] gi|297530573|ref|YP_003671848.1| ribosome recycling factor [Geobacillus sp. C56-T3] gi|319766267|ref|YP_004131768.1| ribosome recycling factor [Geobacillus sp. Y412MC52] gi|60390228|sp|Q5L0J9|RRF_GEOKA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|56379629|dbj|BAD75537.1| ribosome recycling factor [Geobacillus kaustophilus HTA426] gi|297253825|gb|ADI27271.1| ribosome recycling factor [Geobacillus sp. C56-T3] gi|317111133|gb|ADU93625.1| ribosome recycling factor [Geobacillus sp. Y412MC52] Length = 185 Score = 250 bits (639), Expect = 6e-65, Method: Composition-based stats. Identities = 71/180 (39%), Positives = 117/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q K++M + +++ ++R GR + +L+ V V+ YG P+NQ+A+++V E R+L Sbjct: 6 IQQAKEKMDKAVQAFTRELASIRAGRANAGLLEKVTVDYYGVPTPINQLASISVPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +DK + +E+ I S+LGL P +G V+R+ +P TEERR L K+ Y+E +K Sbjct: 66 VIQPYDKSAIKEMEKAILASDLGLTPSNDGSVIRLVIPPLTEERRRELAKLVKKYSEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD D LKK K+G+ +ED + S +++QK+TD I ID+ +EK+KE+M Sbjct: 126 VAVRNIRRDANDELKKLEKNGEITEDELRSYTDEVQKLTDDHIAKIDAITKEKEKEVMEV 185 >gi|88812380|ref|ZP_01127630.1| Ribosome recycling factor [Nitrococcus mobilis Nb-231] gi|88790387|gb|EAR21504.1| Ribosome recycling factor [Nitrococcus mobilis Nb-231] Length = 185 Score = 250 bits (639), Expect = 7e-65, Method: Composition-based stats. Identities = 81/186 (43%), Positives = 116/186 (62%), Gaps = 1/186 (0%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M + I+ ++ RMG +I L + +RTGR S+LD + V YG+ +PLNQVA+VTV Sbjct: 1 MTEDIN-KDAAARMGKSIEALNHEFHKIRTGRAHTSLLDHITVTYYGAKMPLNQVASVTV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 +PR L V+ W+K M+ VE+ I ES+LGL P G V+RIP+P TEERR L++V Sbjct: 60 SDPRTLSVTPWEKGMIPVVEKAILESDLGLTPNTAGGVIRIPLPPLTEERRRELIRVVKH 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E+++I++RN+RRD LK K + +ED E+DIQK+TD I +DS K+ Sbjct: 120 ETEQARIAIRNVRRDANSALKARLKDKEITEDDEKRAEDDIQKLTDKHISEVDSLLVAKE 179 Query: 181 KEIMHF 186 KE+M Sbjct: 180 KELMEV 185 >gi|294500908|ref|YP_003564608.1| ribosome recycling factor [Bacillus megaterium QM B1551] gi|295706254|ref|YP_003599329.1| ribosome recycling factor [Bacillus megaterium DSM 319] gi|294350845|gb|ADE71174.1| ribosome recycling factor [Bacillus megaterium QM B1551] gi|294803913|gb|ADF40979.1| ribosome recycling factor [Bacillus megaterium DSM 319] Length = 185 Score = 250 bits (639), Expect = 7e-65, Method: Composition-based stats. Identities = 80/180 (44%), Positives = 118/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 LQN K+RM I +++ ++R GR S S+LD V VE YG+ P+NQ+A V+V E RML Sbjct: 6 LQNAKERMEKAIQSFSRELASIRAGRASASLLDRVTVEYYGAPTPINQLAQVSVPEARML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +DK + VE+ I +S+LGL P +G ++R+ +P TEERR LVK+ YAE++K Sbjct: 66 VIQPYDKSQIGEVEKAILKSDLGLTPTSDGTIIRLSIPALTEERRRELVKMVKKYAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RRD D KK K G+ +ED + +DIQK+TD I +D ++K++EIM Sbjct: 126 VAVRNVRRDANDDFKKLEKKGEITEDDLRGYSDDIQKLTDDHIVKVDKVAKDKEEEIMAV 185 >gi|251797408|ref|YP_003012139.1| ribosome recycling factor [Paenibacillus sp. JDR-2] gi|247545034|gb|ACT02053.1| ribosome recycling factor [Paenibacillus sp. JDR-2] Length = 184 Score = 250 bits (639), Expect = 7e-65, Method: Composition-based stats. Identities = 80/186 (43%), Positives = 116/186 (62%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M Q I ++ ++RM I LK+D+ TLR GR +P++LD V+VE YG+ P+ Q+AN+ V Sbjct: 1 MPQAIK-KSAEERMEKAIGALKRDLATLRAGRATPALLDRVQVEYYGAPTPVAQLANINV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R L + WDK +A++E+ I +S+LGL P +G +RI +P TEERR LVK Sbjct: 60 PDSRTLFIQPWDKSSIAAIEKAIMKSDLGLTPSNDGSAIRITLPPLTEERRSELVKTTKK 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 + E++K+++RNIRRD D +KK K+ SED + DIQK TD I +D K+ Sbjct: 120 FGEEAKVAIRNIRRDANDDIKKLEKT-TISEDESRRHQEDIQKATDRFIAEVDKVLVAKE 178 Query: 181 KEIMHF 186 KEIM Sbjct: 179 KEIMEV 184 >gi|154248356|ref|YP_001419314.1| ribosome recycling factor [Xanthobacter autotrophicus Py2] gi|238686805|sp|A7INR3|RRF_XANP2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|154162441|gb|ABS69657.1| ribosome recycling factor [Xanthobacter autotrophicus Py2] Length = 187 Score = 250 bits (639), Expect = 7e-65, Method: Composition-based stats. Identities = 96/182 (52%), Positives = 129/182 (70%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D+ ++K RM + L+ ++ LRTGR S S+LD + +EAYG+ +PLNQVA V+V E R Sbjct: 6 FDMSDLKRRMQGAVGVLRDELGGLRTGRASASLLDPITIEAYGARMPLNQVATVSVPEAR 65 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 +L V VWD+ MV++VE+ I +SNLGLNP EGQVLR+ +PE +ERR LVKVAH YAE Sbjct: 66 LLSVQVWDRGMVSAVEKAIRDSNLGLNPNTEGQVLRLRIPELNQERRQELVKVAHKYAEA 125 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +K++VR++RRDGMDHLKK K G+ S D + L D+QK TD TI ID +K+KEI+ Sbjct: 126 AKVAVRHVRRDGMDHLKKVEKDGEMSSDDLDRLSKDVQKATDETIAEIDQTLAQKEKEIL 185 Query: 185 HF 186 Sbjct: 186 SV 187 >gi|298529658|ref|ZP_07017061.1| ribosome recycling factor [Desulfonatronospira thiodismutans ASO3-1] gi|298511094|gb|EFI34997.1| ribosome recycling factor [Desulfonatronospira thiodismutans ASO3-1] Length = 184 Score = 250 bits (639), Expect = 7e-65, Method: Composition-based stats. Identities = 75/186 (40%), Positives = 125/186 (67%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+QV+D + +++M I+ L KD+ LRTGR S ++D + VE YG+ PLNQ+A++++ Sbjct: 1 MDQVLD--DCREKMDKAIASLDKDLAKLRTGRASVGLVDGITVEYYGTMTPLNQLASISI 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R + + WD+ + + +E+ I +S+LGLNP+ +G+++RI +P TEERR LVK+A Sbjct: 59 PDSRTIAIQPWDRNVFSGIEKAIMKSDLGLNPVSDGKIIRINIPPLTEERRKDLVKMAKK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 Y+E +K+++RN+RR+ D LKK + +ED + ++QKITDS + +D +K+ Sbjct: 119 YSEDAKVALRNVRREANDTLKKMKNDKDLTEDEMHKGHEEVQKITDSYVSKVDRILADKE 178 Query: 181 KEIMHF 186 KEIM F Sbjct: 179 KEIMEF 184 >gi|303247584|ref|ZP_07333855.1| ribosome recycling factor [Desulfovibrio fructosovorans JJ] gi|302491064|gb|EFL50958.1| ribosome recycling factor [Desulfovibrio fructosovorans JJ] Length = 184 Score = 250 bits (639), Expect = 8e-65, Method: Composition-based stats. Identities = 74/180 (41%), Positives = 118/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ +DRM ++ L K+ LRTGR + S+LD ++V+ YG+ PL+Q+A+V+ + R + Sbjct: 5 LKDAEDRMQKALASLDKEFARLRTGRATTSLLDGIRVDYYGTPTPLDQMASVSTPDSRTI 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WD++ VE+ I +S+LGL P+ +G+++RI +P TE+RR L KVA YAE++K Sbjct: 65 TIAPWDRKAFHDVEKAILKSDLGLTPVNDGKIIRISIPPLTEDRRKDLAKVAKKYAEEAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD D LKK + SED + D+QK+TD+ I D +K+KEIM Sbjct: 125 VAIRNIRRDANDALKKKKNDKAISEDDQHKGQEDVQKLTDAYIAKADDALAKKEKEIMEI 184 >gi|261419452|ref|YP_003253134.1| ribosome recycling factor [Geobacillus sp. Y412MC61] gi|261375909|gb|ACX78652.1| ribosome recycling factor [Geobacillus sp. Y412MC61] Length = 186 Score = 250 bits (639), Expect = 8e-65, Method: Composition-based stats. Identities = 71/180 (39%), Positives = 117/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q K++M + +++ ++R GR + +L+ V V+ YG P+NQ+A+++V E R+L Sbjct: 7 IQQAKEKMDKAVQAFTRELASIRAGRANAGLLEKVTVDYYGVPTPINQLASISVPEARLL 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +DK + +E+ I S+LGL P +G V+R+ +P TEERR L K+ Y+E +K Sbjct: 67 VIQPYDKSAIKEMEKAILASDLGLTPSNDGSVIRLVIPPLTEERRRELAKLVKKYSEDAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD D LKK K+G+ +ED + S +++QK+TD I ID+ +EK+KE+M Sbjct: 127 VAVRNIRRDANDELKKLEKNGEITEDELRSYTDEVQKLTDDHIAKIDAITKEKEKEVMEV 186 >gi|316933924|ref|YP_004108906.1| ribosome recycling factor [Rhodopseudomonas palustris DX-1] gi|315601638|gb|ADU44173.1| ribosome recycling factor [Rhodopseudomonas palustris DX-1] Length = 186 Score = 250 bits (639), Expect = 8e-65, Method: Composition-based stats. Identities = 97/186 (52%), Positives = 132/186 (70%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ D+ +K RM LK ++ LRTGR S SML+ V+V+AYGSH+PLNQVA V+V Sbjct: 1 MSDKFDINELKRRMQGAAQSLKHELGGLRTGRASASMLEPVQVDAYGSHMPLNQVATVSV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPR++ V VWDK MV +VE+GI +SNLGL+P EGQV+R+ +PE EERR LVKVAH Sbjct: 61 PEPRLISVQVWDKSMVKAVEKGIVDSNLGLSPATEGQVIRLRIPELNEERRKELVKVAHK 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE ++++VR++RRDG+D +KK K+ + SED L+ ++QK TD+TI ID K+ Sbjct: 121 YAEAARVAVRHVRRDGLDTIKKLEKAHEISEDDQKRLDTEVQKATDATIGEIDQLLANKE 180 Query: 181 KEIMHF 186 KEI+ Sbjct: 181 KEILTV 186 >gi|258511403|ref|YP_003184837.1| ribosome recycling factor [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478129|gb|ACV58448.1| ribosome recycling factor [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 187 Score = 250 bits (639), Expect = 8e-65, Method: Composition-based stats. Identities = 82/180 (45%), Positives = 126/180 (70%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +QN+++RM I L+++ T+R GR +PSMLD V VE YG+ +P+NQVA+VT EPR+L Sbjct: 8 IQNLQERMDKAIQNLRREFATVRAGRAAPSMLDHVMVEYYGAQMPVNQVASVTSPEPRLL 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+S WDK M++ +E+ I +S+LGLNP +G V+R+ +P TE+RR LVK AE+++ Sbjct: 68 VISPWDKSMLSEIEKAIQKSDLGLNPANDGNVIRLTIPALTEQRRQELVKQVRKMAEEAR 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRDG + +KK K+G SED V L + +Q++TD I +D E+K+K++ Sbjct: 128 VAIRNIRRDGNEEIKKLEKAGDLSEDDVRRLMDRVQQLTDKAIAQVDRLLEDKEKDVTQV 187 >gi|121533727|ref|ZP_01665554.1| ribosome recycling factor [Thermosinus carboxydivorans Nor1] gi|121307718|gb|EAX48633.1| ribosome recycling factor [Thermosinus carboxydivorans Nor1] Length = 186 Score = 250 bits (639), Expect = 8e-65, Method: Composition-based stats. Identities = 76/176 (43%), Positives = 119/176 (67%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 +++M + L+K+ +LR GR +PS+LD V V+ YG P+NQVAN++V EPR++V+ Sbjct: 11 EEKMKKALEVLRKEFASLRAGRATPSLLDKVTVDYYGMPSPINQVANISVPEPRLIVIQP 70 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 W+K M+A +E+ I +S+LGL P +G V+R+ +P+ T++RR LVKV H AE++++++R Sbjct: 71 WEKSMLAPIEKAILKSDLGLTPTNDGNVIRLSIPQLTQQRRSELVKVVHKKAEEARVAIR 130 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 N+RRD D +KK K + SED + D+QK+TD IK +D K+KEIM Sbjct: 131 NLRRDANDAIKKLEKEKQVSEDEAKKAQEDMQKLTDKYIKEVDQVMAAKEKEIMEV 186 >gi|304404282|ref|ZP_07385944.1| ribosome recycling factor [Paenibacillus curdlanolyticus YK9] gi|304347260|gb|EFM13092.1| ribosome recycling factor [Paenibacillus curdlanolyticus YK9] Length = 184 Score = 249 bits (638), Expect = 9e-65, Method: Composition-based stats. Identities = 79/186 (42%), Positives = 118/186 (63%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M Q I ++ ++RM I LK+D+ TLR GR +P++LD ++VE YG+ P+NQ+AN+ Sbjct: 1 MPQAIK-KDAEERMEKAIGALKRDLATLRAGRATPALLDRIQVEYYGAMTPVNQLANINT 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R L++ WDK +A++E+ I +S+LGL P +G +R+ +P TEERR LVK+ Sbjct: 60 PDSRTLLLQPWDKSSLAAIEKAIMKSDLGLTPSNDGSTIRLSIPALTEERRSELVKLTKK 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 + E++KI+VRNIRRD D +KK K SED ++DIQK TD + +D K+ Sbjct: 120 FGEEAKIAVRNIRRDANDDIKKLEKDA-ISEDESRRHQDDIQKTTDRFVGEVDKVLAAKE 178 Query: 181 KEIMHF 186 KEIM Sbjct: 179 KEIMEV 184 >gi|297717876|gb|ADI50081.1| ribosome recycling factor [Candidatus Odyssella thessalonicensis L13] Length = 185 Score = 249 bits (638), Expect = 9e-65, Method: Composition-based stats. Identities = 91/180 (50%), Positives = 121/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + RM I L ++ LRTGR S ++LD +KV+AYGS P+NQV N+ V E RML Sbjct: 6 ITEAARRMDGAIEVLNREFSGLRTGRASVNLLDAIKVDAYGSPTPINQVGNINVPEARML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V VWD M+ +VE+ I ++ LGLNP V+GQ++RIP+P EERR L KVA YAE++K Sbjct: 66 TVQVWDNSMIKAVEKAIRDAGLGLNPAVDGQLIRIPLPPLNEERRQELTKVAAKYAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ISVRN+RRD M+ LKKS K G+ SED L +++QK+TD+ IK ID K+K+IM Sbjct: 126 ISVRNVRRDIMESLKKSEKDGEISEDEHRRLSDEVQKVTDAHIKKIDEILASKQKDIMQV 185 >gi|222085860|ref|YP_002544391.1| ribosome recycling factor [Agrobacterium radiobacter K84] gi|254809484|sp|B9JEX3|RRF_AGRRK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|221723308|gb|ACM26464.1| ribosome recycling factor [Agrobacterium radiobacter K84] Length = 186 Score = 249 bits (638), Expect = 9e-65, Method: Composition-based stats. Identities = 110/186 (59%), Positives = 140/186 (75%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M++ DL+ +K RM I+ K D+ +LRTGR S ++LD V +EAYGS +PLNQVAN+TV Sbjct: 1 MSEGTDLKELKRRMDGAIAAFKSDIASLRTGRASANILDPVTIEAYGSRMPLNQVANITV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPRML VSVWDK MV +VERGI ESNLGLNPI++GQ LRIP+PE EERR +LVKVAH Sbjct: 61 PEPRMLSVSVWDKSMVGAVERGIRESNLGLNPIIDGQNLRIPLPELNEERRRSLVKVAHE 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAEK+K+++R++RRDGMD LKK+ K G +D SL +QK+TD TI +ID +K+ Sbjct: 121 YAEKAKVAIRHVRRDGMDGLKKAEKDGDIGQDEGRSLSERVQKMTDETISDIDRLLVDKE 180 Query: 181 KEIMHF 186 KEIM Sbjct: 181 KEIMQV 186 >gi|73541567|ref|YP_296087.1| ribosome recycling factor [Ralstonia eutropha JMP134] gi|123624825|sp|Q470E0|RRF_RALEJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|72118980|gb|AAZ61243.1| ribosome recycling factor [Ralstonia eutropha JMP134] Length = 186 Score = 249 bits (638), Expect = 9e-65, Method: Composition-based stats. Identities = 77/179 (43%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++++ +M +I K D+ +RTGR +LD V+V+ YGS VP++QVAN+ + + R + Sbjct: 8 KSVEQKMQKSIEAFKADLAKVRTGRAHVGLLDHVQVDYYGSMVPISQVANIGLGDARTIT 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K+MV +VE+ I + +LGLNP G+V+R+P+P TEERR L KV AE +KI Sbjct: 68 VQPWEKKMVGAVEKAIRDCDLGLNPATMGEVIRVPMPPLTEERRKELTKVVKGEAEGAKI 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD + KK K SED ++D+QK+TD + ID EK+KEIM Sbjct: 128 AVRNLRRDANEQFKKLVKDKAISEDDERRGQDDVQKLTDKYVAEIDKMVAEKEKEIMTV 186 >gi|22297803|ref|NP_681050.1| ribosome recycling factor [Thermosynechococcus elongatus BP-1] gi|34222747|sp|Q8DM64|RRF_THEEB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|22293980|dbj|BAC07812.1| ribosome releasing factor [Thermosynechococcus elongatus BP-1] Length = 182 Score = 249 bits (638), Expect = 9e-65, Method: Composition-based stats. Identities = 71/180 (39%), Positives = 116/180 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++++RM ++ + D ++RTGR + ++LD V V+ YG+ PL +ANV+ + + Sbjct: 3 LADVEERMQKSVEATQHDFNSIRTGRANAALLDRVMVDYYGTETPLRSLANVSTPDATTI 62 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D+ +AS+E+ I S+LGL P +G +R+ +P T ERR LVK A AE K Sbjct: 63 LIQPYDRSTLASIEKAIQLSDLGLTPNNDGSSVRLNIPPLTTERRKELVKTAAKIAEGGK 122 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD +DH+KK+ K+G+ +ED V L+ +QK+TD I ID+ EK+K+IM Sbjct: 123 VAIRNIRRDAIDHIKKAGKAGELTEDEVKDLQEKVQKLTDKYIGKIDALLAEKEKDIMTV 182 >gi|89054949|ref|YP_510400.1| ribosome recycling factor [Jannaschia sp. CCS1] gi|88864498|gb|ABD55375.1| ribosome recycling factor [Jannaschia sp. CCS1] Length = 243 Score = 249 bits (638), Expect = 9e-65, Method: Composition-based stats. Identities = 85/185 (45%), Positives = 123/185 (66%), Gaps = 4/185 (2%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 + ++D +++ RM I+ L+ + +LRTGR S SML+ V V+AYG+ P+NQV V V Sbjct: 63 DFMLDTDDLERRMEGAIASLRTEFASLRTGRASASMLEPVMVDAYGAMTPINQVGTVNVP 122 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 EPRM+ V+VWDK +V VE+ I ES LG+NP + G ++ +P+PE EERR L KVA Y Sbjct: 123 EPRMVTVNVWDKGLVNKVEKAIRESGLGINPQMNGTIIMLPIPELNEERRRELTKVAGTY 182 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 AE ++++VRN+RRDGMD +KK+ SED E +Q++TD+ IK +D E K++ Sbjct: 183 AENARVAVRNVRRDGMDQIKKA----DTSEDDAKFWEGAVQELTDTFIKRVDDQLETKQE 238 Query: 182 EIMHF 186 EIM Sbjct: 239 EIMQV 243 >gi|94496939|ref|ZP_01303513.1| ribosome recycling factor [Sphingomonas sp. SKA58] gi|94423615|gb|EAT08642.1| ribosome recycling factor [Sphingomonas sp. SKA58] Length = 185 Score = 249 bits (638), Expect = 9e-65, Method: Composition-based stats. Identities = 94/180 (52%), Positives = 125/180 (69%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D +++ RM + LK D+ LRTGR + +LD V VE YG+H+PLNQVA V+ EPR Sbjct: 4 YDKADLERRMAGAVESLKGDLTGLRTGRANVQLLDPVTVEVYGAHMPLNQVATVSAPEPR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 ML V VWDK V ++ I + LGLNPIV+GQ LR+P+P+ TEERR L K+A YAE Sbjct: 64 MLSVQVWDKSNVGPCDKAIRSAGLGLNPIVDGQTLRLPIPDLTEERRKELAKLASKYAEG 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++++VRN+RRDGMD+LK K G+ SED LE ++QK+TDSTI +IDS K+KEI+ Sbjct: 124 ARVAVRNVRRDGMDNLKADEKKGEISEDERKRLETEVQKLTDSTIADIDSVTSAKEKEIL 183 >gi|30021912|ref|NP_833543.1| ribosome recycling factor [Bacillus cereus ATCC 14579] gi|47569102|ref|ZP_00239791.1| ribosome recycling factor [Bacillus cereus G9241] gi|206972656|ref|ZP_03233597.1| ribosome recycling factor [Bacillus cereus AH1134] gi|218234587|ref|YP_002368625.1| ribosome recycling factor [Bacillus cereus B4264] gi|228922578|ref|ZP_04085878.1| Ribosome-recycling factor [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228954100|ref|ZP_04116129.1| Ribosome-recycling factor [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228960040|ref|ZP_04121704.1| Ribosome-recycling factor [Bacillus thuringiensis serovar pakistani str. T13001] gi|228986967|ref|ZP_04147093.1| Ribosome-recycling factor [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229047510|ref|ZP_04193100.1| Ribosome-recycling factor [Bacillus cereus AH676] gi|229071322|ref|ZP_04204545.1| Ribosome-recycling factor [Bacillus cereus F65185] gi|229081079|ref|ZP_04213589.1| Ribosome-recycling factor [Bacillus cereus Rock4-2] gi|229111295|ref|ZP_04240848.1| Ribosome-recycling factor [Bacillus cereus Rock1-15] gi|229129100|ref|ZP_04258073.1| Ribosome-recycling factor [Bacillus cereus BDRD-Cer4] gi|229146395|ref|ZP_04274766.1| Ribosome-recycling factor [Bacillus cereus BDRD-ST24] gi|229152023|ref|ZP_04280218.1| Ribosome-recycling factor [Bacillus cereus m1550] gi|229157400|ref|ZP_04285478.1| Ribosome-recycling factor [Bacillus cereus ATCC 4342] gi|229180100|ref|ZP_04307444.1| Ribosome-recycling factor [Bacillus cereus 172560W] gi|229191993|ref|ZP_04318963.1| Ribosome-recycling factor [Bacillus cereus ATCC 10876] gi|296504319|ref|YP_003666019.1| ribosome recycling factor [Bacillus thuringiensis BMB171] gi|33301535|sp|Q812X4|RRF_BACCR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226703253|sp|B7HDU7|RRF_BACC4 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|29897468|gb|AAP10744.1| Ribosome Recycling Factor (RRF) [Bacillus cereus ATCC 14579] gi|47554264|gb|EAL12626.1| ribosome recycling factor [Bacillus cereus G9241] gi|206732413|gb|EDZ49594.1| ribosome recycling factor [Bacillus cereus AH1134] gi|218162544|gb|ACK62536.1| ribosome recycling factor [Bacillus cereus B4264] gi|228591544|gb|EEK49393.1| Ribosome-recycling factor [Bacillus cereus ATCC 10876] gi|228603309|gb|EEK60786.1| Ribosome-recycling factor [Bacillus cereus 172560W] gi|228626127|gb|EEK82876.1| Ribosome-recycling factor [Bacillus cereus ATCC 4342] gi|228631372|gb|EEK88006.1| Ribosome-recycling factor [Bacillus cereus m1550] gi|228637028|gb|EEK93487.1| Ribosome-recycling factor [Bacillus cereus BDRD-ST24] gi|228654337|gb|EEL10202.1| Ribosome-recycling factor [Bacillus cereus BDRD-Cer4] gi|228672071|gb|EEL27362.1| Ribosome-recycling factor [Bacillus cereus Rock1-15] gi|228702123|gb|EEL54599.1| Ribosome-recycling factor [Bacillus cereus Rock4-2] gi|228711776|gb|EEL63728.1| Ribosome-recycling factor [Bacillus cereus F65185] gi|228723757|gb|EEL75112.1| Ribosome-recycling factor [Bacillus cereus AH676] gi|228772745|gb|EEM21185.1| Ribosome-recycling factor [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228799556|gb|EEM46509.1| Ribosome-recycling factor [Bacillus thuringiensis serovar pakistani str. T13001] gi|228805666|gb|EEM52256.1| Ribosome-recycling factor [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228837007|gb|EEM82348.1| Ribosome-recycling factor [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|296325371|gb|ADH08299.1| ribosome recycling factor [Bacillus thuringiensis BMB171] Length = 185 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 78/180 (43%), Positives = 119/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ ++M ++ +++ T+R GR + S+LD V+V+ YG+ P+ Q+AN+TV E R+L Sbjct: 6 LKSSNEKMEKAVAAYSRELATVRAGRANASVLDKVQVDYYGAPTPVVQLANITVPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +DK + +E+ I +++LGLNP +G V+RI P TEERR LVKV YAE++K Sbjct: 66 VIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RRDG D LKK K+G+ +ED + DIQK TD I +D + K+KEIM Sbjct: 126 VAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIMEV 185 >gi|49478397|ref|YP_037885.1| ribosome recycling factor [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141664|ref|YP_085165.1| ribosome recycling factor [Bacillus cereus E33L] gi|118479046|ref|YP_896197.1| ribosome recycling factor [Bacillus thuringiensis str. Al Hakam] gi|165872626|ref|ZP_02217257.1| ribosome recycling factor [Bacillus anthracis str. A0488] gi|167635820|ref|ZP_02394129.1| ribosome recycling factor [Bacillus anthracis str. A0442] gi|167639854|ref|ZP_02398123.1| ribosome recycling factor [Bacillus anthracis str. A0193] gi|170687902|ref|ZP_02879116.1| ribosome recycling factor [Bacillus anthracis str. A0465] gi|177652096|ref|ZP_02934642.1| ribosome recycling factor [Bacillus anthracis str. A0174] gi|190568475|ref|ZP_03021382.1| ribosome recycling factor [Bacillus anthracis Tsiankovskii-I] gi|196036913|ref|ZP_03104297.1| ribosome recycling factor [Bacillus cereus W] gi|196042138|ref|ZP_03109421.1| ribosome recycling factor [Bacillus cereus NVH0597-99] gi|196044581|ref|ZP_03111816.1| ribosome recycling factor [Bacillus cereus 03BB108] gi|218904952|ref|YP_002452786.1| ribosome recycling factor [Bacillus cereus AH820] gi|225865805|ref|YP_002751183.1| ribosome recycling factor [Bacillus cereus 03BB102] gi|227813268|ref|YP_002813277.1| ribosome recycling factor [Bacillus anthracis str. CDC 684] gi|228916461|ref|ZP_04080027.1| Ribosome-recycling factor [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228928872|ref|ZP_04091904.1| Ribosome-recycling factor [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935138|ref|ZP_04097965.1| Ribosome-recycling factor [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228947543|ref|ZP_04109833.1| Ribosome-recycling factor [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229123337|ref|ZP_04252541.1| Ribosome-recycling factor [Bacillus cereus 95/8201] gi|229162760|ref|ZP_04290717.1| Ribosome-recycling factor [Bacillus cereus R309803] gi|229186063|ref|ZP_04313233.1| Ribosome-recycling factor [Bacillus cereus BGSC 6E1] gi|254683469|ref|ZP_05147329.1| ribosome recycling factor [Bacillus anthracis str. CNEVA-9066] gi|254721990|ref|ZP_05183779.1| ribosome recycling factor [Bacillus anthracis str. A1055] gi|254735862|ref|ZP_05193568.1| ribosome recycling factor [Bacillus anthracis str. Western North America USA6153] gi|254739612|ref|ZP_05197306.1| ribosome recycling factor [Bacillus anthracis str. Kruger B] gi|254756015|ref|ZP_05208046.1| ribosome recycling factor [Bacillus anthracis str. Vollum] gi|254759324|ref|ZP_05211349.1| ribosome recycling factor [Bacillus anthracis str. Australia 94] gi|301055314|ref|YP_003793525.1| ribosome releasing factor [Bacillus anthracis CI] gi|60390240|sp|Q636K2|RRF_BACCZ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|60390255|sp|Q6HEZ1|RRF_BACHK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166230411|sp|A0RHJ7|RRF_BACAH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226703251|sp|B7JJA2|RRF_BACC0 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|254809490|sp|C3L7A3|RRF_BACAC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|254809491|sp|C1EP48|RRF_BACC3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|49329953|gb|AAT60599.1| ribosome recycling factor [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51975133|gb|AAU16683.1| ribosome recycling factor [Bacillus cereus E33L] gi|118418271|gb|ABK86690.1| ribosome recycling factor [Bacillus thuringiensis str. Al Hakam] gi|164711658|gb|EDR17204.1| ribosome recycling factor [Bacillus anthracis str. A0488] gi|167512255|gb|EDR87632.1| ribosome recycling factor [Bacillus anthracis str. A0193] gi|167528777|gb|EDR91535.1| ribosome recycling factor [Bacillus anthracis str. A0442] gi|170668218|gb|EDT18967.1| ribosome recycling factor [Bacillus anthracis str. A0465] gi|172082465|gb|EDT67530.1| ribosome recycling factor [Bacillus anthracis str. A0174] gi|190560479|gb|EDV14457.1| ribosome recycling factor [Bacillus anthracis Tsiankovskii-I] gi|195990468|gb|EDX54452.1| ribosome recycling factor [Bacillus cereus W] gi|196024616|gb|EDX63288.1| ribosome recycling factor [Bacillus cereus 03BB108] gi|196026990|gb|EDX65614.1| ribosome recycling factor [Bacillus cereus NVH0597-99] gi|218535243|gb|ACK87641.1| ribosome recycling factor [Bacillus cereus AH820] gi|225788805|gb|ACO29022.1| ribosome recycling factor [Bacillus cereus 03BB102] gi|227004475|gb|ACP14218.1| ribosome recycling factor [Bacillus anthracis str. CDC 684] gi|228597482|gb|EEK55132.1| Ribosome-recycling factor [Bacillus cereus BGSC 6E1] gi|228620642|gb|EEK77511.1| Ribosome-recycling factor [Bacillus cereus R309803] gi|228660113|gb|EEL15749.1| Ribosome-recycling factor [Bacillus cereus 95/8201] gi|228812063|gb|EEM58394.1| Ribosome-recycling factor [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228824503|gb|EEM70308.1| Ribosome-recycling factor [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830679|gb|EEM76284.1| Ribosome-recycling factor [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228843040|gb|EEM88122.1| Ribosome-recycling factor [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|300377483|gb|ADK06387.1| ribosome releasing factor [Bacillus cereus biovar anthracis str. CI] Length = 185 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 79/180 (43%), Positives = 119/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ ++M ++ +++ T+R GR S S+LD V+V+ YG+ P+ Q+AN+TV E R+L Sbjct: 6 LKSSNEKMEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +DK + +E+ I +++LGLNP +G V+RI P TEERR LVKV YAE++K Sbjct: 66 VIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RRDG D LKK K+G+ +ED + DIQK TD I +D + K+KEIM Sbjct: 126 VAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIMEV 185 >gi|317129173|ref|YP_004095455.1| ribosome recycling factor [Bacillus cellulosilyticus DSM 2522] gi|315474121|gb|ADU30724.1| ribosome recycling factor [Bacillus cellulosilyticus DSM 2522] Length = 185 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 77/180 (42%), Positives = 122/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ + +M ++ +K++ T+R GR +PS+LD V+VE YG PLNQ+A++ V E RML Sbjct: 6 LKQAEVKMSKSVEAFRKELATIRAGRANPSLLDKVQVEYYGMMTPLNQLASIAVPEARML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + +DK + +ER I +++LGL+P +G ++RI +P TEERR LVK+ Y+E++K Sbjct: 66 TIQPFDKSSLQDIERAIQKADLGLSPTNDGNIIRIAIPALTEERRKELVKLVGRYSEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD D LKK K G+ +ED + ++++QK+TD IK+ID + K++EIM Sbjct: 126 VAVRNIRRDANDELKKLEKDGELTEDDLRWNQDEVQKLTDGVIKDIDEIAKSKEQEIMEV 185 >gi|283835234|ref|ZP_06354975.1| ribosome recycling factor [Citrobacter youngae ATCC 29220] gi|291068945|gb|EFE07054.1| ribosome recycling factor [Citrobacter youngae ATCC 29220] Length = 185 Score = 249 bits (637), Expect = 1e-64, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM + K + +RTGR SPS+LD + VE YG+ PL Q+A+VTV + R L Sbjct: 7 KDAEVRMDKCVEAFKNQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLK 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ M +VE+ I S+LGLNP G +R+P+P TEERR L K+ AE +++ Sbjct: 67 INVFDRSMGPAVEKAIMASDLGLNPSSAGSDIRVPLPPLTEERRKDLTKIVRGEAEGARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD D +K K + SED ++++QK+TD+ IK +D+ EK+ E+M F Sbjct: 127 AVRNVRRDANDKVKALLKDKEISEDDDRRSQDEVQKLTDAAIKKVDAALAEKETELMQF 185 >gi|39935984|ref|NP_948260.1| ribosome recycling factor [Rhodopseudomonas palustris CGA009] gi|192291637|ref|YP_001992242.1| ribosome recycling factor [Rhodopseudomonas palustris TIE-1] gi|47116997|sp|P61309|RRF_RHOPA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|229564263|sp|B3Q7K1|RRF_RHOPT RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|39649838|emb|CAE28360.1| ribosome releasing factor [Rhodopseudomonas palustris CGA009] gi|192285386|gb|ACF01767.1| ribosome recycling factor [Rhodopseudomonas palustris TIE-1] Length = 186 Score = 249 bits (637), Expect = 1e-64, Method: Composition-based stats. Identities = 96/186 (51%), Positives = 131/186 (70%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ D+ +K RM LK ++ LRTGR S SML+ V+V+AYGSH+PLNQVA V+V Sbjct: 1 MSDKFDVNELKRRMQGAAQSLKHELGGLRTGRASASMLEPVQVDAYGSHMPLNQVATVSV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPR++ V VWDK MV +VE+GI +SNLGL+P EGQV+R+ +PE EERR LVKVAH Sbjct: 61 PEPRLISVQVWDKSMVKAVEKGIVDSNLGLSPATEGQVIRLRIPELNEERRKELVKVAHK 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE ++++VR++RRDG+D +KK K+ + SED L+ ++QK TD+ I ID K+ Sbjct: 121 YAEAARVAVRHVRRDGLDTIKKLEKAHEISEDDQKRLDQEVQKATDAAIAEIDQLLANKE 180 Query: 181 KEIMHF 186 KEI+ Sbjct: 181 KEILTV 186 >gi|311068174|ref|YP_003973097.1| ribosome recycling factor [Bacillus atrophaeus 1942] gi|310868691|gb|ADP32166.1| ribosome recycling factor [Bacillus atrophaeus 1942] Length = 185 Score = 249 bits (637), Expect = 1e-64, Method: Composition-based stats. Identities = 77/180 (42%), Positives = 122/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K+RM ++ ++++ T+R GR +PS+LD V VE YG+ PLNQ++++ V E RML Sbjct: 6 LTETKERMEKAVAAYQRELATVRAGRANPSLLDKVTVEYYGAQTPLNQLSSINVPEARML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V++ +DK + +E+ I +++LG+ P +G ++RI +P TEERR LVK+ YAE++K Sbjct: 66 VITPYDKTAIGDIEKAILKADLGVTPTSDGNIIRIAIPALTEERRKELVKLVKKYAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RRD D LKK K+G +ED + + D+QK+TD + IDS ++K+KEIM Sbjct: 126 VAVRNVRRDANDDLKKLEKNGDITEDELRTSNEDVQKLTDEYVSKIDSVTKDKEKEIMEV 185 >gi|75764985|ref|ZP_00744310.1| Ribosome Recycling Factor (RRF) [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218898977|ref|YP_002447388.1| ribosome recycling factor [Bacillus cereus G9842] gi|228902327|ref|ZP_04066484.1| Ribosome-recycling factor [Bacillus thuringiensis IBL 4222] gi|228909648|ref|ZP_04073471.1| Ribosome-recycling factor [Bacillus thuringiensis IBL 200] gi|228940912|ref|ZP_04103471.1| Ribosome-recycling factor [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973841|ref|ZP_04134417.1| Ribosome-recycling factor [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980430|ref|ZP_04140740.1| Ribosome-recycling factor [Bacillus thuringiensis Bt407] gi|229031454|ref|ZP_04187454.1| Ribosome-recycling factor [Bacillus cereus AH1271] gi|229098293|ref|ZP_04229240.1| Ribosome-recycling factor [Bacillus cereus Rock3-29] gi|229104386|ref|ZP_04235055.1| Ribosome-recycling factor [Bacillus cereus Rock3-28] gi|229117310|ref|ZP_04246688.1| Ribosome-recycling factor [Bacillus cereus Rock1-3] gi|226703252|sp|B7IUI3|RRF_BACC2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|74487527|gb|EAO51418.1| Ribosome Recycling Factor (RRF) [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218541328|gb|ACK93722.1| ribosome recycling factor [Bacillus cereus G9842] gi|228666210|gb|EEL21674.1| Ribosome-recycling factor [Bacillus cereus Rock1-3] gi|228679084|gb|EEL33292.1| Ribosome-recycling factor [Bacillus cereus Rock3-28] gi|228685191|gb|EEL39122.1| Ribosome-recycling factor [Bacillus cereus Rock3-29] gi|228729743|gb|EEL80723.1| Ribosome-recycling factor [Bacillus cereus AH1271] gi|228779250|gb|EEM27507.1| Ribosome-recycling factor [Bacillus thuringiensis Bt407] gi|228785866|gb|EEM33869.1| Ribosome-recycling factor [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818748|gb|EEM64814.1| Ribosome-recycling factor [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228849937|gb|EEM94768.1| Ribosome-recycling factor [Bacillus thuringiensis IBL 200] gi|228857296|gb|EEN01799.1| Ribosome-recycling factor [Bacillus thuringiensis IBL 4222] gi|326941592|gb|AEA17488.1| ribosome recycling factor [Bacillus thuringiensis serovar chinensis CT-43] Length = 185 Score = 249 bits (637), Expect = 1e-64, Method: Composition-based stats. Identities = 79/180 (43%), Positives = 119/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ ++M ++ +++ T+R GR S S+LD V+V+ YG+ P+ Q+AN+TV E R+L Sbjct: 6 LKSSNEKMEKAVAAYSRELATVRAGRASSSVLDKVQVDYYGAPTPVVQLANITVPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +DK + +E+ I +++LGLNP +G V+RI P TEERR LVKV YAE++K Sbjct: 66 VIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RRDG D LKK K+G+ +ED + DIQK TD I +D + K+KEIM Sbjct: 126 VAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIMEV 185 >gi|307129823|ref|YP_003881839.1| ribosome recycling factor [Dickeya dadantii 3937] gi|306527352|gb|ADM97282.1| ribosome recycling factor [Dickeya dadantii 3937] Length = 185 Score = 249 bits (637), Expect = 1e-64, Method: Composition-based stats. Identities = 82/179 (45%), Positives = 117/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM + K + +RTGR SPS+LD + VE YGS PL Q+AN+ V + R L Sbjct: 7 KDAETRMDKCVEAFKNQISKVRTGRASPSLLDGIHVEYYGSATPLRQLANIVVEDTRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+V+D+ + +VE+ I S+LGLNP+ G V+R+P+P TEERR L+KV AE+S++ Sbjct: 67 VTVFDRTLGPAVEKAIMASDLGLNPMSAGTVIRVPLPPLTEERRKDLIKVVRGEAEQSRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD D LK K SED ++D+QK+TDS IK ID+ EK+KE+M F Sbjct: 127 AVRNVRRDANDKLKAQLKEKTISEDDERRSQDDVQKLTDSFIKKIDAVLAEKEKELMDF 185 >gi|229019019|ref|ZP_04175860.1| Ribosome-recycling factor [Bacillus cereus AH1273] gi|229025264|ref|ZP_04181684.1| Ribosome-recycling factor [Bacillus cereus AH1272] gi|228736017|gb|EEL86592.1| Ribosome-recycling factor [Bacillus cereus AH1272] gi|228742259|gb|EEL92418.1| Ribosome-recycling factor [Bacillus cereus AH1273] Length = 185 Score = 249 bits (637), Expect = 1e-64, Method: Composition-based stats. Identities = 79/180 (43%), Positives = 118/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ ++M ++ +++ T+R GR S S+LD V+V+ YG+ P+ Q+AN+TV E R+L Sbjct: 6 LKSSNEKMEKAVAAYSRELATVRAGRASSSVLDKVQVDYYGAPTPVVQLANITVPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +DK + +E+ I +++LGLNP +G V+RI P TEERR LVKV YAE++K Sbjct: 66 VIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RRDG D LKK K+G +ED + DIQK TD I +D + K+KEIM Sbjct: 126 VAVRNVRRDGNDDLKKLEKAGDITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIMEV 185 >gi|298291819|ref|YP_003693758.1| ribosome recycling factor [Starkeya novella DSM 506] gi|296928330|gb|ADH89139.1| ribosome recycling factor [Starkeya novella DSM 506] Length = 187 Score = 249 bits (637), Expect = 1e-64, Method: Composition-based stats. Identities = 99/182 (54%), Positives = 135/182 (74%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 ID+ ++K RM I+ LK+++ LRTGR S S+L+ ++V+AYGSH+PLNQVA+V V EPR Sbjct: 6 IDIADLKRRMQGAIAVLKQELSGLRTGRASASLLEPIQVDAYGSHMPLNQVASVNVPEPR 65 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 +L V VWD+ MVA+VE+ I ESNLGLNP EGQVLR+ +PE T++RR LVKVAH YAE Sbjct: 66 LLSVQVWDRGMVAAVEKAIRESNLGLNPQTEGQVLRVRIPELTQDRRQELVKVAHKYAEA 125 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++SVR++RRDG+D LKK+ K G+ S D + L + +QK TD +I ID K+KEI+ Sbjct: 126 ARVSVRHVRRDGLDALKKAEKDGEMSSDDLDRLADQVQKATDQSITEIDQTLSTKEKEIL 185 Query: 185 HF 186 Sbjct: 186 AV 187 >gi|319940997|ref|ZP_08015334.1| ribosome-recycling factor [Sutterella wadsworthensis 3_1_45B] gi|319805570|gb|EFW02365.1| ribosome-recycling factor [Sutterella wadsworthensis 3_1_45B] Length = 186 Score = 249 bits (637), Expect = 1e-64, Method: Composition-based stats. Identities = 77/180 (42%), Positives = 107/180 (59%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q + +MG T+ L+ D +RTGR S +LD ++V+ YG PLNQVA V V + L Sbjct: 7 IQQTQHKMGVTVEKLRDDFTRIRTGRASTGLLDKIRVDYYGCPTPLNQVAQVGVGDAHTL 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V W+K MV E+ I +S+LGLNP G +R+P+P TEERR L KV + E++K Sbjct: 67 TVQPWEKNMVKVCEKAIRDSDLGLNPATSGDTIRVPLPPLTEERRRELTKVVKGFGEEAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RRD L++ K + SED E +IQK+TD + ID EK KEIM Sbjct: 127 VAVRNLRRDANTQLERLEKDKEISEDDQRRYETEIQKLTDRFVAEIDKVIAEKDKEIMTV 186 >gi|237729478|ref|ZP_04559959.1| ribosome releasing factor [Citrobacter sp. 30_2] gi|226909207|gb|EEH95125.1| ribosome releasing factor [Citrobacter sp. 30_2] Length = 185 Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM + K + +RTGR SPS+LD + VE YG+ PL Q+A+VTV + R L Sbjct: 7 KDAEVRMDKCVEAFKNQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLK 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ M +VE+ I S+LGLNP G +R+P+P TEERR L K+ AE +++ Sbjct: 67 INVFDRSMGPAVEKAIMASDLGLNPSSAGSDIRVPLPPLTEERRKDLTKIVRGEAEGARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD D +K K + SED ++D+QK+TD+ IK +D+ EK+ E+M F Sbjct: 127 AVRNVRRDANDKVKALLKEKEISEDDDRRSQDDVQKLTDAAIKKVDAALAEKEAELMQF 185 >gi|149183486|ref|ZP_01861915.1| ribosome recycling factor [Bacillus sp. SG-1] gi|148848798|gb|EDL63019.1| ribosome recycling factor [Bacillus sp. SG-1] Length = 185 Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 117/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + N K+RM I +++ ++R GR + S+LD + V+ YG+ P+NQ+A ++V E RML Sbjct: 6 MSNTKERMTKAIQTFTRELASIRAGRANASLLDKITVDYYGAPTPVNQLAGISVPEARML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +DK + +E+ I +S+LG+ P +G +LRI +P+ TEERR LVK+ +E +K Sbjct: 66 VIQPYDKSALGDIEKAIMKSDLGITPSSDGNILRIVIPQLTEERRKDLVKLVKKESEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD D KK K+G +ED + +D+QK+TD I IDS ++K+KEI+ Sbjct: 126 VAIRNIRRDANDEFKKLEKNGDITEDDLRGYSDDVQKLTDDHINQIDSIAKDKEKEILEV 185 >gi|114704873|ref|ZP_01437781.1| ribosome releasing factor [Fulvimarina pelagi HTCC2506] gi|114539658|gb|EAU42778.1| ribosome releasing factor [Fulvimarina pelagi HTCC2506] Length = 185 Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats. Identities = 93/182 (51%), Positives = 125/182 (68%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D ++K RM I K D+ LRTGR SP++LD V V+AYG+ +P+NQVAN++V EPR Sbjct: 4 FDFDDLKRRMDGAIQSFKGDLAGLRTGRASPNLLDPVMVDAYGTQMPVNQVANISVPEPR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 ++ V+VWDK+MV VER I ESNLGLNP+ +G LRIP+PE E+RR LVKVA YAE+ Sbjct: 64 LVSVTVWDKQMVGKVERAIRESNLGLNPVTDGTTLRIPLPELNEQRRKELVKVAQQYAEQ 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +K++VR++RRDGMD LKK K G +D + +QK+TD + ID K++EIM Sbjct: 124 AKVAVRHVRRDGMDSLKKMEKDGDIGQDDNRQMSERVQKMTDDAVSEIDRTLATKEQEIM 183 Query: 185 HF 186 Sbjct: 184 QV 185 >gi|113868031|ref|YP_726520.1| ribosome recycling factor [Ralstonia eutropha H16] gi|123329181|sp|Q0KA19|RRF_RALEH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|113526807|emb|CAJ93152.1| Ribosome Recycling Factor (RRF) [Ralstonia eutropha H16] Length = 186 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++++ +M +I K D+ +RTGR +LD V+V+ YGS VP++QVA V + + R + Sbjct: 8 KSVEQKMQKSIEAFKADLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVAAVGLADARTIT 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K+MV +VE+ I + +LGLNP G+V+R+P+P TEERR L KV AE +K+ Sbjct: 68 VQPWEKKMVGAVEKAIRDCDLGLNPATMGEVIRVPMPALTEERRKELTKVVKGEAEGAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD + KK K SED ++++QK+TD + ID EK+KEIM Sbjct: 128 AVRNLRRDANEQFKKLVKDKTISEDDERRGQDEVQKLTDKYVAEIDKMVAEKEKEIMTV 186 >gi|229092864|ref|ZP_04223998.1| Ribosome-recycling factor [Bacillus cereus Rock3-42] gi|228690486|gb|EEL44269.1| Ribosome-recycling factor [Bacillus cereus Rock3-42] Length = 185 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 79/180 (43%), Positives = 119/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ ++M ++ +++ T+R GR S S+LD V+V+ YG+ P+ Q+AN+TV E R+L Sbjct: 6 LKSSNEKMEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +DK + +E+ I +++LGLNP +G V+RI P TEERR LVKV YAE++K Sbjct: 66 VIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RRDG D LKK K+G+ +ED + DIQK TD I +D + K+KEIM Sbjct: 126 VAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIMEV 185 >gi|30263828|ref|NP_846205.1| ribosome recycling factor [Bacillus anthracis str. Ames] gi|47529252|ref|YP_020601.1| ribosome recycling factor [Bacillus anthracis str. 'Ames Ancestor'] gi|49186674|ref|YP_029926.1| ribosome recycling factor [Bacillus anthracis str. Sterne] gi|65321151|ref|ZP_00394110.1| COG0233: Ribosome recycling factor [Bacillus anthracis str. A2012] gi|170706904|ref|ZP_02897362.1| ribosome recycling factor [Bacillus anthracis str. A0389] gi|229604313|ref|YP_002868062.1| ribosome recycling factor [Bacillus anthracis str. A0248] gi|33301536|sp|Q81WL1|RRF_BACAN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|254809489|sp|C3P5M6|RRF_BACAA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|30258472|gb|AAP27691.1| ribosome recycling factor [Bacillus anthracis str. Ames] gi|47504400|gb|AAT33076.1| ribosome recycling factor [Bacillus anthracis str. 'Ames Ancestor'] gi|49180601|gb|AAT55977.1| ribosome recycling factor [Bacillus anthracis str. Sterne] gi|170128322|gb|EDS97191.1| ribosome recycling factor [Bacillus anthracis str. A0389] gi|229268721|gb|ACQ50358.1| ribosome recycling factor [Bacillus anthracis str. A0248] Length = 185 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 79/180 (43%), Positives = 118/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ ++M ++ +++ T+R GR S S+LD V+V+ YG+ P+ Q+AN+TV E R+L Sbjct: 6 LKFSNEKMEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +DK + +E+ I +++LGLNP +G V+RI P TEERR LVKV YAE++K Sbjct: 66 VIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RRDG D LKK K+G+ +ED + DIQK TD I +D + K+KEIM Sbjct: 126 VAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIMEV 185 >gi|118590008|ref|ZP_01547412.1| ribosome releasing factor [Stappia aggregata IAM 12614] gi|118437505|gb|EAV44142.1| ribosome releasing factor [Stappia aggregata IAM 12614] Length = 187 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 96/184 (52%), Positives = 133/184 (72%) Query: 3 QVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLE 62 + +DL ++K RM +S LK + LRTGR S SM+D + VEAYG +P+NQVA V+V E Sbjct: 4 EGVDLDDLKRRMQGALSVLKTEFAGLRTGRASSSMMDPITVEAYGQSMPINQVATVSVPE 63 Query: 63 PRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 PRML V VWDK MV++VE+ I ESNLGLNP+V+G +LR+P+PE +ERR L+KVAH YA Sbjct: 64 PRMLAVQVWDKSMVSAVEKAIRESNLGLNPVVDGMLLRLPIPELNQERRQELIKVAHKYA 123 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 E++K+S+R++RRDGMD KK+ K G S+D +++QK+TD I +DS E+K++E Sbjct: 124 EQAKVSIRHVRRDGMDAAKKAEKDGDISQDDSRVASDEVQKLTDQMIAEVDSMLEKKEQE 183 Query: 183 IMHF 186 I Sbjct: 184 ISQV 187 >gi|94310380|ref|YP_583590.1| ribosome recycling factor [Cupriavidus metallidurans CH34] gi|166231214|sp|Q1LNF5|RRF_RALME RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|93354232|gb|ABF08321.1| ribosome recycling factor [Cupriavidus metallidurans CH34] Length = 186 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++++ +M +I K D+ +RTGR +LD V+V+ YGS VP++QVA V++ + R + Sbjct: 8 KSVEQKMQKSIEAFKADLAKVRTGRAHTGLLDHVQVDYYGSMVPISQVAAVSLADARTIS 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K+MV +VE+ I + +LGLNP G V+R+P+P TEERR L KV AE +K+ Sbjct: 68 VQPWEKKMVQAVEKAIRDGDLGLNPATMGDVIRVPMPPLTEERRRELTKVVKGEAEGAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD + KK K SED ++++QK+TD + ID EK+KEIM Sbjct: 128 AVRNLRRDANEQFKKLVKDKAISEDDERRGQDEVQKLTDKFVAEIDKLVAEKEKEIMTV 186 >gi|303325662|ref|ZP_07356105.1| ribosome recycling factor [Desulfovibrio sp. 3_1_syn3] gi|302863578|gb|EFL86509.1| ribosome recycling factor [Desulfovibrio sp. 3_1_syn3] Length = 186 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 76/180 (42%), Positives = 120/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +DRM ++ L +D LRTGR S +++D +K + YG+ P++Q+A+V V + R L Sbjct: 7 LLDAEDRMEKALAALDRDFAKLRTGRASTALVDGIKADYYGTPTPVSQMASVAVPDSRTL 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK +A+VE+ I +S+LGL P+ +G+++RI +P TEERR LVKVA Y+E++K Sbjct: 67 TIQPWDKGGIAAVEKAILKSDLGLTPVNDGKIIRIVIPPLTEERRKDLVKVARKYSEEAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RRD D LKK K + +ED + +D+QK+TD + ++D K+KEIM Sbjct: 127 VAVRNVRRDANDGLKKLEKDKEITEDELKKAVDDVQKLTDKFVGDVDKKCAGKEKEIMDI 186 >gi|295399842|ref|ZP_06809823.1| ribosome recycling factor [Geobacillus thermoglucosidasius C56-YS93] gi|312111646|ref|YP_003989962.1| ribosome recycling factor [Geobacillus sp. Y4.1MC1] gi|294978245|gb|EFG53842.1| ribosome recycling factor [Geobacillus thermoglucosidasius C56-YS93] gi|311216747|gb|ADP75351.1| ribosome recycling factor [Geobacillus sp. Y4.1MC1] Length = 185 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 119/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + K++M + +++ T+R GR +PS+L+ + V+ YG+ P+ Q+A+++ E R+L Sbjct: 6 INTAKEKMDKAVQAFTRELATIRAGRANPSLLEKITVDYYGAPTPIIQLASISAPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +DK ++ +E+ I S+LGL P +G V+RI +P TEERR LVK+ Y+E +K Sbjct: 66 VIQPYDKSVIKDIEKAILSSDLGLTPSNDGSVIRIAIPPLTEERRRELVKLVKKYSEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD D LKK K+G+ +ED + +DIQK+TD+ I ID+ +EK+KE+M Sbjct: 126 VAVRNIRRDANDELKKLEKNGEITEDELRGYIDDIQKLTDNHIAKIDTITKEKEKEVMEV 185 >gi|238754804|ref|ZP_04616155.1| Ribosome-recycling factor [Yersinia ruckeri ATCC 29473] gi|238706964|gb|EEP99330.1| Ribosome-recycling factor [Yersinia ruckeri ATCC 29473] Length = 185 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 81/179 (45%), Positives = 119/179 (66%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RMG + + + +RTGR SPS+LD ++V+ YGS PL Q+ANV V + R L Sbjct: 7 KDAEVRMGKCVDAFQNHISKIRTGRASPSILDGIQVDYYGSATPLRQLANVVVEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ + A+VE+ I S+LGLNP G V+R+P+P TEERR L+KVA AE+ ++ Sbjct: 67 ITVFDRSLNAAVEKAIMSSDLGLNPSSAGSVIRVPLPPLTEERRKDLIKVARGEAEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRN+RRD D +K K SED ++D+QK+TDS IK ID+ EK+ E+M+F Sbjct: 127 SVRNVRRDTNDKVKALLKDKAISEDDDRRCQDDVQKMTDSYIKKIDTALAEKEAELMNF 185 >gi|323137307|ref|ZP_08072385.1| ribosome recycling factor [Methylocystis sp. ATCC 49242] gi|322397294|gb|EFX99817.1| ribosome recycling factor [Methylocystis sp. ATCC 49242] Length = 186 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 96/186 (51%), Positives = 126/186 (67%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M + DL ++K RM I+ LK + LRTGR S S+L+ V V+AYG H PLNQVA ++V Sbjct: 1 MTEKFDLADLKRRMQGAIATLKHEFGGLRTGRASASLLEPVHVDAYGQHSPLNQVATISV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPRML V VWDK +V +V++ I E+NLGL P VEGQ+LRI +PE E+RR LVKVAH Sbjct: 61 PEPRMLSVQVWDKALVIAVDKAIREANLGLQPTVEGQMLRIRMPELNEQRRKELVKVAHK 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE ++++VR++RRDG+D LKK K ED E ++QK TD +K ID+ K+ Sbjct: 121 YAEDARVAVRHVRRDGLDILKKLLKDHAIPEDDEKRHETEVQKATDEAVKEIDAALAAKE 180 Query: 181 KEIMHF 186 KEIM Sbjct: 181 KEIMQV 186 >gi|163760886|ref|ZP_02167965.1| ribosome recycling factor [Hoeflea phototrophica DFL-43] gi|162281930|gb|EDQ32222.1| ribosome recycling factor [Hoeflea phototrophica DFL-43] Length = 186 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 107/186 (57%), Positives = 136/186 (73%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ D + +K RM I+ K D+ +LRTGR S ++LD V VEAYGS VPLNQVANVTV Sbjct: 1 MSDAADSKELKRRMDGAINAFKSDIASLRTGRASANVLDPVMVEAYGSKVPLNQVANVTV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPRML VSVWDK+MV +V+RGI E+NLGLNPIV+GQ LRIP+PE EERR +LVKV+H Sbjct: 61 PEPRMLGVSVWDKQMVGAVDRGIREANLGLNPIVDGQNLRIPLPELNEERRKSLVKVSHT 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE +++++RN+RRDGMD LKK+ K G S+D + +QK+TD I ID +K+ Sbjct: 121 YAENARVAIRNVRRDGMDTLKKAEKDGDISQDDSRRESDQVQKMTDEMISEIDRLLVDKE 180 Query: 181 KEIMHF 186 KEIM Sbjct: 181 KEIMQV 186 >gi|323697430|ref|ZP_08109342.1| ribosome recycling factor [Desulfovibrio sp. ND132] gi|323457362|gb|EGB13227.1| ribosome recycling factor [Desulfovibrio desulfuricans ND132] Length = 184 Score = 248 bits (635), Expect = 2e-64, Method: Composition-based stats. Identities = 77/180 (42%), Positives = 114/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + K RM I+ L KD LRTGR + +++D + V+ YG+ P++Q+++V+V + + + Sbjct: 5 LDDGKKRMSGAITALDKDFSKLRTGRATTALVDSILVDYYGTPTPISQLSSVSVPDSKTI 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK SVE+ I S+LGLNP+ +G+++RI +P TEERR LVKVA Y E +K Sbjct: 65 TIQPWDKGAFGSVEKAIQTSDLGLNPVNDGKIIRISIPPLTEERRKELVKVAKKYTEDAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RN+RRD D LKK K + SED E D+QK+TD +K D K+KEI+ Sbjct: 125 IAIRNVRRDMNDALKKMEKDKEISEDDQRRSEADVQKMTDDYVKKADEVMAAKEKEILEI 184 >gi|317051930|ref|YP_004113046.1| ribosome recycling factor [Desulfurispirillum indicum S5] gi|316947014|gb|ADU66490.1| ribosome recycling factor [Desulfurispirillum indicum S5] Length = 185 Score = 248 bits (635), Expect = 2e-64, Method: Composition-based stats. Identities = 69/179 (38%), Positives = 107/179 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +K++M + +KD TLRTGR S ++LD VKV+ YG+ PL Q +VT+ + + Sbjct: 7 SEVKEKMQKAVEATRKDFSTLRTGRASTALLDNVKVDYYGTPTPLKQAGSVTIPDATTIS 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + W+ M+ ++E+ I +NLG+ P +GQ++RI +P TE+RR L + +AE +I Sbjct: 67 IQPWEPHMLPAIEKAIVAANLGVTPSNDGQMIRISIPPLTEDRRKELTRQVKKFAEDGRI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRR G D +K K +ED + ++QKITD +K ID E K+KE+M Sbjct: 127 AVRNIRRFGNDSVKALEKDKLITEDEAKRAQEEVQKITDGFVKTIDEMAEAKEKELMTV 185 >gi|220934336|ref|YP_002513235.1| ribosome recycling factor [Thioalkalivibrio sp. HL-EbGR7] gi|254809540|sp|B8GQ53|RRF_THISH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|219995646|gb|ACL72248.1| ribosome recycling factor [Thioalkalivibrio sp. HL-EbGR7] Length = 185 Score = 248 bits (635), Expect = 2e-64, Method: Composition-based stats. Identities = 84/179 (46%), Positives = 118/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ K RMG +I L+ ++ +RTGR S+LD V VE YGS VP++QVANV V + R L Sbjct: 7 KDAKARMGKSIESLRNELAKIRTGRAHTSLLDHVMVEYYGSDVPISQVANVNVEDARTLT 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+ W+K MV+ VE+ I S+LGLNP G V+R+P+P TEERR LVKV AE +++ Sbjct: 67 VTPWEKTMVSKVEKAIMTSDLGLNPSSMGTVIRVPMPALTEERRRDLVKVVRGEAENARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD + LK K + SED +++IQK+TDS I+ +D EK+KE+M Sbjct: 127 AIRNIRRDANNALKALVKGKEISEDDERRAQDEIQKLTDSHIEEVDKVLAEKEKELMEV 185 >gi|23010622|ref|ZP_00051247.1| COG0233: Ribosome recycling factor [Magnetospirillum magnetotacticum MS-1] Length = 187 Score = 248 bits (635), Expect = 2e-64, Method: Composition-based stats. Identities = 95/182 (52%), Positives = 129/182 (70%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 DL +IK RM +S L KD+ +LRTGR +PS+LD ++VEAYG+ +P+ QVA V+V EPR Sbjct: 6 FDLGDIKRRMQGAVSSLSKDLGSLRTGRATPSLLDPIQVEAYGASMPMAQVATVSVPEPR 65 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 +L +SVWD+ MV +VE+ I ES+LGLNP+ EGQ +R+ +PE E+RR +VKVAH YAE+ Sbjct: 66 LLSISVWDRSMVTNVEKAIRESDLGLNPMTEGQTIRLRIPEMNEQRRKEMVKVAHKYAEE 125 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++++VR++RRDG+D LKK K G SED D+QK TD I ID K+KEIM Sbjct: 126 ARVAVRHVRRDGLDILKKLEKDGAISEDDEKRQAGDVQKATDDAIAEIDGVLASKEKEIM 185 Query: 185 HF 186 Sbjct: 186 QV 187 >gi|37524676|ref|NP_928020.1| ribosome releasing factor [Photorhabdus luminescens subsp. laumondii TTO1] gi|39932036|sp|Q7N8P4|RRF_PHOLL RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|36784101|emb|CAE12970.1| ribosome releasing factor [Photorhabdus luminescens subsp. laumondii TTO1] Length = 185 Score = 248 bits (635), Expect = 2e-64, Method: Composition-based stats. Identities = 78/179 (43%), Positives = 117/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ +DRM ++ LK + +RTGR SPS+LD + VE YG+ PL Q+ANV + R L Sbjct: 7 KDAQDRMEKSVEALKNQISKVRTGRASPSLLDGIIVEYYGAPTPLRQLANVIAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ M ++E+ I S+LGLNP G +R+P+P TEERR L+KV + AE+ ++ Sbjct: 67 ITVFDRTMTPAIEKAIMASDLGLNPSSAGTTIRVPLPPLTEERRKDLIKVVRSEAEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRNIRRD D +K K + SED ++DIQK+TD+ IK +D +K++E+M F Sbjct: 127 SVRNIRRDANDKIKALLKDKEISEDDERRAQDDIQKLTDNFIKKVDEALTKKEEELMEF 185 >gi|78045140|ref|YP_360604.1| ribosome recycling factor [Carboxydothermus hydrogenoformans Z-2901] gi|123575922|sp|Q3AB80|RRF_CARHZ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|77997255|gb|ABB16154.1| ribosome recycling factor [Carboxydothermus hydrogenoformans Z-2901] Length = 185 Score = 248 bits (635), Expect = 2e-64, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 117/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ +D M I LKK+ T+R GR +P++L+ V VE YG+ +P+NQ+A ++ EPR+L Sbjct: 6 LKEAQDHMQKAIEVLKKEFATMRVGRATPALLEKVVVEYYGTQMPVNQLATISAPEPRLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK + ++E+ I +S+LG+ P +G V+R+ +P T+ERR LVKVA AE+++ Sbjct: 66 VIQPWDKGALGAIEKAILKSDLGITPTNDGSVIRLAIPPLTQERRQELVKVARKKAEEAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD D +K K SED ++++QK+TD IK +D + K+ EI+ Sbjct: 126 VAIRNIRRDANDRIKDLEKDKVISEDEGKRGQDEVQKLTDKFIKTVDELLKAKEDEILSI 185 >gi|228998600|ref|ZP_04158187.1| Ribosome-recycling factor [Bacillus mycoides Rock3-17] gi|229006100|ref|ZP_04163788.1| Ribosome-recycling factor [Bacillus mycoides Rock1-4] gi|228755176|gb|EEM04533.1| Ribosome-recycling factor [Bacillus mycoides Rock1-4] gi|228761068|gb|EEM10027.1| Ribosome-recycling factor [Bacillus mycoides Rock3-17] Length = 185 Score = 248 bits (635), Expect = 2e-64, Method: Composition-based stats. Identities = 76/180 (42%), Positives = 114/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ ++M ++ +++ ++R GR S S LD V+V+ YG+ P+ Q+AN+TV E R+L Sbjct: 6 LKAANEKMEKAVAAYSRELASVRAGRASASALDKVQVDYYGAPTPVVQLANITVPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +DK + +E+ I +++LGLNP +G V+RI P TEERR LVK YAE++K Sbjct: 66 VIQPYDKTSIGDIEKAILKADLGLNPSNDGSVIRIAFPALTEERRRDLVKTVKKYAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RRD D LKK K+G +ED + DIQK TD I +D + K+KEIM Sbjct: 126 VAVRNVRRDANDDLKKLEKAGDITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIMEV 185 >gi|322382357|ref|ZP_08056264.1| ribosome recycling factor-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153710|gb|EFX46085.1| ribosome recycling factor-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 180 Score = 248 bits (635), Expect = 2e-64, Method: Composition-based stats. Identities = 78/178 (43%), Positives = 119/178 (66%), Gaps = 1/178 (0%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 N +DRM ++ L+K++++LR GR +P++LD V+VE YG+ PLNQ+AN+ V +PR L++ Sbjct: 4 NAEDRMQKAVAALQKELVSLRAGRATPALLDRVQVEYYGAMTPLNQLANINVPDPRTLLI 63 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 WDK + ++E+ I +S LGL P +G ++R+ +P TEERRL LVK+ Y E +K++ Sbjct: 64 QPWDKSSLGAIEKAILKSELGLTPTSDGTMIRLTIPPLTEERRLELVKMTKKYGEDAKVA 123 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +RNIRRD + +KK K+ + SED ++DIQK TD I +D K+KEIM Sbjct: 124 IRNIRRDSNESIKKMEKT-EISEDESRRHQDDIQKSTDKYIAEVDKVLAAKEKEIMEV 180 >gi|317153887|ref|YP_004121935.1| ribosome recycling factor [Desulfovibrio aespoeensis Aspo-2] gi|316944138|gb|ADU63189.1| ribosome recycling factor [Desulfovibrio aespoeensis Aspo-2] Length = 184 Score = 248 bits (635), Expect = 2e-64, Method: Composition-based stats. Identities = 76/180 (42%), Positives = 115/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + K RM IS L+KD LRTGR + +++D + V+ YG+ P+NQ+++V+V + + + Sbjct: 5 LNDGKKRMAGAISALEKDFSKLRTGRATTALVDTIVVDYYGTPTPINQLSSVSVPDAKSI 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WD+ +VE+ I S+LGLNP+ +G+++RI +P TEERR LVKVA Y E+ K Sbjct: 65 TIQPWDRGAFGAVEKAIQTSDLGLNPVNDGKIIRISIPPLTEERRKELVKVAKKYTEECK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RN+RRD D LKK K SED + E D+QK+TD +K + K+KEI+ Sbjct: 125 IAIRNVRRDLNDSLKKLEKDKAISEDELKKGEADVQKLTDDFVKQSEGVLVAKEKEILEI 184 >gi|146341066|ref|YP_001206114.1| ribosome recycling factor [Bradyrhizobium sp. ORS278] gi|190360236|sp|A4YVG3|RRF_BRASO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|146193872|emb|CAL77889.1| Ribosome recycling factor (Ribosome-releasing factor) (RRF) [Bradyrhizobium sp. ORS278] Length = 187 Score = 248 bits (635), Expect = 2e-64, Method: Composition-based stats. Identities = 96/182 (52%), Positives = 128/182 (70%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 DL +K RM LK ++ LRTGR S SM++ V+VEAYGSH+PLNQ+A V+V EPR Sbjct: 6 FDLNELKRRMQGATQALKHELGGLRTGRASASMVEPVQVEAYGSHMPLNQLATVSVPEPR 65 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 +L V VWD+ MV +VE+ I +SNLGL+P EGQV+R+ +PE +ERR LVKVAH YAE+ Sbjct: 66 LLSVQVWDRSMVKAVEKAIVDSNLGLSPATEGQVIRLRIPELNQERRKELVKVAHKYAEQ 125 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++++VR++RRDG+D LKK K+ + SED L D+QK TDS I ID K+KEI+ Sbjct: 126 ARVAVRHVRRDGLDTLKKLEKNHEMSEDDQERLAGDVQKATDSVISEIDQLLAAKEKEIL 185 Query: 185 HF 186 Sbjct: 186 TV 187 >gi|254448744|ref|ZP_05062201.1| ribosome recycling factor [gamma proteobacterium HTCC5015] gi|198261585|gb|EDY85873.1| ribosome recycling factor [gamma proteobacterium HTCC5015] Length = 185 Score = 248 bits (635), Expect = 2e-64, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 112/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM ++ L+ D+ +RTGR PS+L+ ++VE YG+ P+ QVAN+TV + R LV Sbjct: 7 KDAESRMKKSLESLQGDLTRIRTGRAHPSLLEHIQVEYYGAKTPIKQVANITVEDARTLV 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+ W+K+MV ++E+ I ES+LGLNP G V+RIP+P TEERR VK+ E+ K+ Sbjct: 67 VTPWEKDMVQTIEKAIMESDLGLNPTSAGTVMRIPLPPLTEERRKEFVKLVRQEGEQGKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD K K + SED E IQK+TD + +D K++E+M Sbjct: 127 AIRNIRRDANGDFKDLLKEKEISEDEQRRAEEVIQKLTDKYVAEVDGLLAAKEQELMEV 185 >gi|228992552|ref|ZP_04152479.1| Ribosome-recycling factor [Bacillus pseudomycoides DSM 12442] gi|228767186|gb|EEM15822.1| Ribosome-recycling factor [Bacillus pseudomycoides DSM 12442] Length = 185 Score = 248 bits (634), Expect = 3e-64, Method: Composition-based stats. Identities = 76/180 (42%), Positives = 114/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ ++M ++ +++ ++R GR S S LD V+V+ YG+ P+ Q+AN+TV E R+L Sbjct: 6 LKATNEKMEKAVAAYSRELASVRAGRASASALDKVQVDYYGAPTPVVQLANITVPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +DK + +E+ I +++LGLNP +G V+RI P TEERR LVK YAE++K Sbjct: 66 VIQPYDKTSIGDIEKAILKADLGLNPSNDGSVIRIAFPALTEERRRDLVKTVKKYAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RRD D LKK K+G +ED + DIQK TD I +D + K+KEIM Sbjct: 126 VAVRNVRRDANDDLKKLEKAGDITEDDLRGYTEDIQKETDKYIAKVDEITKNKEKEIMEV 185 >gi|116620031|ref|YP_822187.1| ribosome recycling factor [Candidatus Solibacter usitatus Ellin6076] gi|116223193|gb|ABJ81902.1| ribosome recycling factor [Candidatus Solibacter usitatus Ellin6076] Length = 201 Score = 248 bits (634), Expect = 3e-64, Method: Composition-based stats. Identities = 79/179 (44%), Positives = 119/179 (66%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 N+K RM +S L+ +M ++RTGR + S+LD ++V+ YG+ PLNQVAN+ V EP ++ Sbjct: 22 ANLKTRMEKAVSDLQHEMASIRTGRATLSLLDHIRVDYYGTPTPLNQVANLHVPEPNLIT 81 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + WD + ++E+ I S+LGLNP +G+V+R+P+P TEERR LVK HA AE ++ Sbjct: 82 IQPWDVSQIGTIEKSIRTSDLGLNPANDGKVIRLPIPPLTEERRKELVKKLHAAAEHHRV 141 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRDG + +KK K K +ED ++IQK+TD + +D+ + K+KEIM Sbjct: 142 AVRNIRRDGNEAVKKLSKDKKITEDDDKKAHDEIQKLTDLYMGKVDTAAKTKEKEIMEI 200 >gi|194289789|ref|YP_002005696.1| ribosome recycling factor [Cupriavidus taiwanensis LMG 19424] gi|238692748|sp|B3R2B4|RRF_CUPTR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|193223624|emb|CAQ69631.1| ribosome releasing factor [Cupriavidus taiwanensis LMG 19424] Length = 186 Score = 248 bits (634), Expect = 3e-64, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + +M +I K D+ +RTGR +LD V+V+ YGS VP++QVA + + + R + Sbjct: 8 KSAEQKMQKSIEAFKADLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVAAIGLADARTIT 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K+MV++VE+ I + +LGLNP G+V+R+P+P TEERR L KV AE +K+ Sbjct: 68 VQPWEKKMVSAVEKAIRDCDLGLNPATMGEVIRVPMPALTEERRKELTKVVKGEAEGAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD + KK K SED ++++QK+TD + ID EK+KEIM Sbjct: 128 AVRNLRRDANEQFKKLVKDKTISEDEERRGQDEVQKLTDKYVAEIDRMVAEKEKEIMTV 186 >gi|86357537|ref|YP_469429.1| ribosome recycling factor [Rhizobium etli CFN 42] gi|190891610|ref|YP_001978152.1| ribosome recycling factor protein [Rhizobium etli CIAT 652] gi|123512098|sp|Q2K8Y4|RRF_RHIEC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238692538|sp|B3PYP5|RRF_RHIE6 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|86281639|gb|ABC90702.1| ribosome recycling factor protein [Rhizobium etli CFN 42] gi|190696889|gb|ACE90974.1| ribosome recycling factor protein [Rhizobium etli CIAT 652] gi|327189225|gb|EGE56404.1| ribosome recycling factor [Rhizobium etli CNPAF512] Length = 186 Score = 248 bits (634), Expect = 3e-64, Method: Composition-based stats. Identities = 112/186 (60%), Positives = 140/186 (75%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M++ ID++ +K RM +S K D+ +LRTGR S ++LD V +EAYGS VPLNQVAN+TV Sbjct: 1 MSEGIDIKELKRRMDGAVSAFKSDIASLRTGRASANILDPVTIEAYGSRVPLNQVANITV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPRML VSVWDK MV++VERGI ESNLGLNPIV+GQ LRIP+PE EERR +LVKVAH Sbjct: 61 PEPRMLTVSVWDKSMVSAVERGIRESNLGLNPIVDGQSLRIPLPELNEERRKSLVKVAHD 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAEKSK+++R++RRDGMD LKK+ K G +D + +QK+TD TI ID EK+ Sbjct: 121 YAEKSKVAIRHVRRDGMDGLKKAEKDGVIGQDESRAQSERVQKMTDETISEIDRLLGEKE 180 Query: 181 KEIMHF 186 KEIM Sbjct: 181 KEIMQV 186 >gi|284008517|emb|CBA75037.1| ribosome recycling factor [Arsenophonus nasoniae] Length = 185 Score = 248 bits (634), Expect = 3e-64, Method: Composition-based stats. Identities = 77/179 (43%), Positives = 118/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK + +RTGR SPS+LD + VE YG+ PL Q+AN+T + R L Sbjct: 7 KDAQERMEKSVEALKSQISKVRTGRASPSLLDGIVVEYYGAATPLRQLANITAEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ + +VE+ I S+LGLNP G ++R+P+P TEERR L+KV AE+ ++ Sbjct: 67 ITVFDRTLTPAVEKAIMASDLGLNPSSAGTIIRVPLPPLTEERRKDLIKVVRNDAEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRN RRD D +K K + SED +++IQK+TD+ IK +D E+K+KE+M F Sbjct: 127 SVRNARRDANDKIKALLKDKEISEDDERRAQDEIQKLTDNFIKKVDEALEQKEKELMEF 185 >gi|284051585|ref|ZP_06381795.1| ribosome recycling factor [Arthrospira platensis str. Paraca] gi|291566938|dbj|BAI89210.1| ribosome recycling factor [Arthrospira platensis NIES-39] Length = 182 Score = 248 bits (634), Expect = 3e-64, Method: Composition-based stats. Identities = 66/180 (36%), Positives = 109/180 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++++ M + + T+RTGR + S+LD + VE YGS PL +A+++ + + Sbjct: 3 LADVENLMKKALESTGRSFNTIRTGRANASLLDRITVEYYGSPTPLKSLASISTPDASTI 62 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + +D+ + ++E+ I S++GL P +G V+R+ +P TE RR VK+A YAE+ + Sbjct: 63 TIQPFDRNSLNNIEKAISMSDVGLTPNNDGSVVRLNIPPLTEARRQEFVKLAGKYAEEGR 122 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +SVRN+RRD +D ++K KSG SED L++ IQK+TD +D E K+K+IM Sbjct: 123 VSVRNVRRDAIDSVRKQEKSGDISEDESRDLQDQIQKLTDKYTAKVDELLEAKEKDIMTV 182 >gi|254780776|ref|YP_003065189.1| ribosome recycling factor [Candidatus Liberibacter asiaticus str. psy62] gi|170785427|gb|ACB37708.1| ribosome recycling factor [Candidatus Liberibacter asiaticus] gi|254040453|gb|ACT57249.1| ribosome recycling factor [Candidatus Liberibacter asiaticus str. psy62] Length = 186 Score = 248 bits (633), Expect = 3e-64, Method: Composition-based stats. Identities = 186/186 (100%), Positives = 186/186 (100%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV Sbjct: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA Sbjct: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK Sbjct: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 Query: 181 KEIMHF 186 KEIMHF Sbjct: 181 KEIMHF 186 >gi|154686069|ref|YP_001421230.1| ribosome recycling factor [Bacillus amyloliquefaciens FZB42] gi|166230410|sp|A7Z4S3|RRF_BACA2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|154351920|gb|ABS73999.1| Frr [Bacillus amyloliquefaciens FZB42] Length = 185 Score = 248 bits (633), Expect = 3e-64, Method: Composition-based stats. Identities = 78/180 (43%), Positives = 121/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K+RM ++ +++ ++R GR +PS+LD V VE YG+ PLNQ++++ V E RML Sbjct: 6 LTQTKERMEKAVAAYSRELASVRAGRANPSLLDKVTVEYYGAQTPLNQLSSINVPEARML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV+ +DK + +E+ I +++LG+ P +G ++RI +P TEERR LVKV YAE++K Sbjct: 66 VVTPYDKTAIGDIEKAILKADLGVTPTSDGTIIRIAIPALTEERRKELVKVVKKYAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RRD D LKK K+G +ED + + D+QK+TD + IDS ++K+KEIM Sbjct: 126 VAVRNVRRDSNDDLKKLEKNGDITEDELRASSEDVQKLTDEYVSKIDSVTKDKEKEIMEV 185 >gi|163941562|ref|YP_001646446.1| ribosome recycling factor [Bacillus weihenstephanensis KBAB4] gi|229013007|ref|ZP_04170172.1| Ribosome-recycling factor [Bacillus mycoides DSM 2048] gi|229061427|ref|ZP_04198772.1| Ribosome-recycling factor [Bacillus cereus AH603] gi|229134631|ref|ZP_04263441.1| Ribosome-recycling factor [Bacillus cereus BDRD-ST196] gi|229168563|ref|ZP_04296286.1| Ribosome-recycling factor [Bacillus cereus AH621] gi|229174490|ref|ZP_04302022.1| Ribosome-recycling factor [Bacillus cereus MM3] gi|229564221|sp|A9VT62|RRF_BACWK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|163863759|gb|ABY44818.1| ribosome recycling factor [Bacillus weihenstephanensis KBAB4] gi|228609050|gb|EEK66340.1| Ribosome-recycling factor [Bacillus cereus MM3] gi|228614969|gb|EEK72071.1| Ribosome-recycling factor [Bacillus cereus AH621] gi|228648892|gb|EEL04917.1| Ribosome-recycling factor [Bacillus cereus BDRD-ST196] gi|228717850|gb|EEL69498.1| Ribosome-recycling factor [Bacillus cereus AH603] gi|228748261|gb|EEL98121.1| Ribosome-recycling factor [Bacillus mycoides DSM 2048] Length = 185 Score = 248 bits (633), Expect = 3e-64, Method: Composition-based stats. Identities = 78/180 (43%), Positives = 117/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ ++M ++ +++ T+R GR S S+LD V+V+ YG+ P+ Q+AN+TV E R+L Sbjct: 6 LKSSNEKMEKAVAAYSRELATVRAGRASSSVLDKVQVDYYGAPTPVVQLANITVPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +DK + +E+ I +++LGLNP +G V+RI P TEERR LVKV YAE++K Sbjct: 66 VIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RRD D LKK K+G +ED + DIQK TD I +D + K+KEIM Sbjct: 126 VAVRNVRRDSNDDLKKLEKAGDITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIMEV 185 >gi|15799854|ref|NP_285866.1| ribosome recycling factor [Escherichia coli O157:H7 EDL933] gi|15829428|ref|NP_308201.1| ribosome recycling factor [Escherichia coli O157:H7 str. Sakai] gi|16128165|ref|NP_414714.1| ribosome recycling factor [Escherichia coli str. K-12 substr. MG1655] gi|24111607|ref|NP_706117.1| ribosome recycling factor [Shigella flexneri 2a str. 301] gi|26246119|ref|NP_752158.1| ribosome recycling factor [Escherichia coli CFT073] gi|30061729|ref|NP_835900.1| ribosome recycling factor [Shigella flexneri 2a str. 2457T] gi|74310792|ref|YP_309211.1| ribosome recycling factor [Shigella sonnei Ss046] gi|82542771|ref|YP_406718.1| ribosome recycling factor [Shigella boydii Sb227] gi|82775562|ref|YP_401909.1| ribosome recycling factor [Shigella dysenteriae Sd197] gi|89107052|ref|AP_000832.1| ribosome recycling factor [Escherichia coli str. K-12 substr. W3110] gi|91209242|ref|YP_539228.1| ribosome recycling factor [Escherichia coli UTI89] gi|110640391|ref|YP_668119.1| ribosome recycling factor [Escherichia coli 536] gi|110804224|ref|YP_687744.1| ribosome recycling factor [Shigella flexneri 5 str. 8401] gi|157155211|ref|YP_001461341.1| ribosome recycling factor [Escherichia coli E24377A] gi|157159637|ref|YP_001456955.1| ribosome recycling factor [Escherichia coli HS] gi|168751391|ref|ZP_02776413.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4113] gi|168755785|ref|ZP_02780792.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4401] gi|168764321|ref|ZP_02789328.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4501] gi|168770354|ref|ZP_02795361.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4486] gi|168777009|ref|ZP_02802016.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4196] gi|168782064|ref|ZP_02807071.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4076] gi|168789281|ref|ZP_02814288.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC869] gi|170021475|ref|YP_001726429.1| ribosome recycling factor [Escherichia coli ATCC 8739] gi|170079808|ref|YP_001729128.1| ribosome recycling factor [Escherichia coli str. K-12 substr. DH10B] gi|170683322|ref|YP_001742300.1| ribosome recycling factor [Escherichia coli SMS-3-5] gi|187731916|ref|YP_001878974.1| ribosome recycling factor [Shigella boydii CDC 3083-94] gi|188496088|ref|ZP_03003358.1| ribosome releasing factor [Escherichia coli 53638] gi|191166361|ref|ZP_03028193.1| ribosome releasing factor [Escherichia coli B7A] gi|191172803|ref|ZP_03034340.1| ribosome releasing factor [Escherichia coli F11] gi|193063223|ref|ZP_03044314.1| ribosome releasing factor [Escherichia coli E22] gi|193067565|ref|ZP_03048532.1| ribosome releasing factor [Escherichia coli E110019] gi|194428316|ref|ZP_03060858.1| ribosome releasing factor [Escherichia coli B171] gi|194433418|ref|ZP_03065697.1| ribosome releasing factor [Shigella dysenteriae 1012] gi|194439153|ref|ZP_03071235.1| ribosome releasing factor [Escherichia coli 101-1] gi|195938146|ref|ZP_03083528.1| ribosome recycling factor [Escherichia coli O157:H7 str. EC4024] gi|208809164|ref|ZP_03251501.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4206] gi|208812775|ref|ZP_03254104.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4045] gi|208819126|ref|ZP_03259446.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4042] gi|209398036|ref|YP_002268780.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4115] gi|209917362|ref|YP_002291446.1| ribosome recycling factor [Escherichia coli SE11] gi|215485333|ref|YP_002327764.1| ribosome recycling factor [Escherichia coli O127:H6 str. E2348/69] gi|217325138|ref|ZP_03441222.1| ribosome releasing factor [Escherichia coli O157:H7 str. TW14588] gi|218547627|ref|YP_002381418.1| ribosome recycling factor [Escherichia fergusonii ATCC 35469] gi|218552752|ref|YP_002385665.1| ribosome recycling factor [Escherichia coli IAI1] gi|218557113|ref|YP_002390026.1| ribosome recycling factor [Escherichia coli S88] gi|218688047|ref|YP_002396259.1| ribosome recycling factor [Escherichia coli ED1a] gi|218693637|ref|YP_002401304.1| ribosome recycling factor [Escherichia coli 55989] gi|218698592|ref|YP_002406221.1| ribosome recycling factor [Escherichia coli IAI39] gi|218703426|ref|YP_002410945.1| ribosome recycling factor [Escherichia coli UMN026] gi|227884915|ref|ZP_04002720.1| ribosome recycling factor [Escherichia coli 83972] gi|237704331|ref|ZP_04534812.1| ribosome-recycling factor [Escherichia sp. 3_2_53FAA] gi|238899570|ref|YP_002925366.1| ribosome recycling factor [Escherichia coli BW2952] gi|253774801|ref|YP_003037632.1| ribosome recycling factor [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254037591|ref|ZP_04871668.1| ribosome-recycling factor [Escherichia sp. 1_1_43] gi|254160291|ref|YP_003043399.1| ribosome recycling factor [Escherichia coli B str. REL606] gi|254791305|ref|YP_003076142.1| ribosome recycling factor [Escherichia coli O157:H7 str. TW14359] gi|256021604|ref|ZP_05435469.1| ribosome recycling factor [Shigella sp. D9] gi|256025484|ref|ZP_05439349.1| ribosome recycling factor [Escherichia sp. 4_1_40B] gi|260842404|ref|YP_003220182.1| ribosome recycling factor [Escherichia coli O103:H2 str. 12009] gi|260853382|ref|YP_003227273.1| ribosome recycling factor [Escherichia coli O26:H11 str. 11368] gi|260866321|ref|YP_003232723.1| ribosome recycling factor [Escherichia coli O111:H- str. 11128] gi|261226926|ref|ZP_05941207.1| ribosome recycling factor [Escherichia coli O157:H7 str. FRIK2000] gi|261255330|ref|ZP_05947863.1| ribosome recycling factor [Escherichia coli O157:H7 str. FRIK966] gi|291280994|ref|YP_003497812.1| Ribosome recycling factor [Escherichia coli O55:H7 str. CB9615] gi|293403241|ref|ZP_06647338.1| frr [Escherichia coli FVEC1412] gi|293408264|ref|ZP_06652104.1| ribosome recycling factor [Escherichia coli B354] gi|293418057|ref|ZP_06660679.1| ribosome recycling factor [Escherichia coli B185] gi|293476829|ref|ZP_06665237.1| ribosome recycling factor [Escherichia coli B088] gi|297521925|ref|ZP_06940311.1| ribosome recycling factor [Escherichia coli OP50] gi|298378777|ref|ZP_06988661.1| ribosome-recycling factor [Escherichia coli FVEC1302] gi|300816212|ref|ZP_07096435.1| ribosome recycling factor [Escherichia coli MS 107-1] gi|300824105|ref|ZP_07104225.1| ribosome recycling factor [Escherichia coli MS 119-7] gi|300900790|ref|ZP_07118934.1| ribosome recycling factor [Escherichia coli MS 198-1] gi|300901991|ref|ZP_07120018.1| ribosome recycling factor [Escherichia coli MS 84-1] gi|300920146|ref|ZP_07136597.1| ribosome recycling factor [Escherichia coli MS 115-1] gi|300923036|ref|ZP_07139103.1| ribosome recycling factor [Escherichia coli MS 182-1] gi|300932126|ref|ZP_07147411.1| ribosome recycling factor [Escherichia coli MS 187-1] gi|300938579|ref|ZP_07153312.1| ribosome recycling factor [Escherichia coli MS 21-1] gi|300949796|ref|ZP_07163770.1| ribosome recycling factor [Escherichia coli MS 116-1] gi|300956055|ref|ZP_07168380.1| ribosome recycling factor [Escherichia coli MS 175-1] gi|300984932|ref|ZP_07177197.1| ribosome recycling factor [Escherichia coli MS 200-1] gi|300993607|ref|ZP_07180463.1| ribosome recycling factor [Escherichia coli MS 45-1] gi|301025948|ref|ZP_07189432.1| ribosome recycling factor [Escherichia coli MS 69-1] gi|301028665|ref|ZP_07191886.1| ribosome recycling factor [Escherichia coli MS 196-1] gi|301049915|ref|ZP_07196840.1| ribosome recycling factor [Escherichia coli MS 185-1] gi|301305308|ref|ZP_07211404.1| ribosome recycling factor [Escherichia coli MS 124-1] gi|301330030|ref|ZP_07222714.1| ribosome recycling factor [Escherichia coli MS 78-1] gi|301646495|ref|ZP_07246370.1| ribosome recycling factor [Escherichia coli MS 146-1] gi|306815228|ref|ZP_07449377.1| ribosome recycling factor [Escherichia coli NC101] gi|307136772|ref|ZP_07496128.1| ribosome recycling factor [Escherichia coli H736] gi|307311381|ref|ZP_07591023.1| ribosome recycling factor [Escherichia coli W] gi|309796349|ref|ZP_07690758.1| ribosome recycling factor [Escherichia coli MS 145-7] gi|312966308|ref|ZP_07780534.1| ribosome recycling factor [Escherichia coli 2362-75] gi|312970272|ref|ZP_07784454.1| ribosome recycling factor [Escherichia coli 1827-70] gi|331640626|ref|ZP_08341774.1| ribosome recycling factor [Escherichia coli H736] gi|331645315|ref|ZP_08346426.1| ribosome recycling factor [Escherichia coli M605] gi|331651077|ref|ZP_08352105.1| ribosome recycling factor [Escherichia coli M718] gi|331661243|ref|ZP_08362175.1| ribosome recycling factor [Escherichia coli TA206] gi|331661546|ref|ZP_08362470.1| ribosome recycling factor [Escherichia coli TA143] gi|331666413|ref|ZP_08367294.1| ribosome recycling factor [Escherichia coli TA271] gi|331671678|ref|ZP_08372476.1| ribosome recycling factor [Escherichia coli TA280] gi|331680751|ref|ZP_08381410.1| ribosome recycling factor [Escherichia coli H591] gi|331681557|ref|ZP_08382194.1| ribosome recycling factor [Escherichia coli H299] gi|332282846|ref|ZP_08395259.1| ribosome-recycling factor [Shigella sp. D9] gi|67472290|sp|P0A805|RRF_ECOLI RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|67472291|sp|P0A806|RRF_ECOL6 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|67472292|sp|P0A807|RRF_ECO57 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|67472293|sp|P0A808|RRF_SHIFL RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|122424957|sp|Q1RG17|RRF_ECOUT RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|123147265|sp|Q0T837|RRF_SHIF8 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|123148410|sp|Q0TLG1|RRF_ECOL5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|123560535|sp|Q325W8|RRF_SHIBS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|123563477|sp|Q32JT7|RRF_SHIDS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|123618027|sp|Q3Z5I6|RRF_SHISS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166991554|sp|A7ZHR2|RRF_ECO24 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166991555|sp|A7ZWB8|RRF_ECOHS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|189044054|sp|B1IQG9|RRF_ECOLC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226703260|sp|B7MBF3|RRF_ECO45 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226703261|sp|B7NID4|RRF_ECO7I RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226703262|sp|B7M1X4|RRF_ECO8A RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226703263|sp|B7N839|RRF_ECOLU RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226703264|sp|B1LGX4|RRF_ECOSM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226703265|sp|B7LWB1|RRF_ESCF3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226749928|sp|B5Z0F1|RRF_ECO5E RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226749929|sp|B6HZE6|RRF_ECOSE RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|229564224|sp|B1XD41|RRF_ECODH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238689500|sp|B2U315|RRF_SHIB3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|254809510|sp|B7UIL7|RRF_ECO27 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|254809511|sp|B7LGN3|RRF_ECO55 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|254809512|sp|B7MP32|RRF_ECO81 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|259494540|sp|C4ZRR4|RRF_ECOBW RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|13399451|pdb|1EK8|A Chain A, Crystal Structure Of The Ribosome Recycling Factor (Rrf) From Escherichia Coli gi|71042411|pdb|1ZN0|A Chain A, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The 50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf gi|71042414|pdb|1ZN1|A Chain A, Coordinates Of Rrf Fitted Into Cryo-Em Map Of The 70s Post- Termination Complex gi|169404635|pdb|2RDO|8 Chain 8, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound gi|12512897|gb|AAG54474.1|AE005193_4 ribosome releasing factor [Escherichia coli O157:H7 str. EDL933] gi|26106516|gb|AAN78702.1|AE016755_202 Ribosome recycling factor [Escherichia coli CFT073] gi|147771|gb|AAA24607.1| ribosome releasing factor (gtg start codon) [Escherichia coli] gi|806329|dbj|BAA02599.1| ribosome releasing factor (FRR) [Escherichia coli] gi|1552749|gb|AAB08601.1| ribosome release factor [Escherichia coli] gi|1786368|gb|AAC73283.1| ribosome recycling factor [Escherichia coli str. K-12 substr. MG1655] gi|13359630|dbj|BAB33597.1| ribosome releasing factor [Escherichia coli O157:H7 str. Sakai] gi|21239027|dbj|BAB96748.1| ribosome recycling factor [Escherichia coli str. K12 substr. W3110] gi|24050375|gb|AAN41824.1| ribosome releasing factor [Shigella flexneri 2a str. 301] gi|30039971|gb|AAP15705.1| ribosome releasing factor [Shigella flexneri 2a str. 2457T] gi|73854269|gb|AAZ86976.1| ribosome releasing factor [Shigella sonnei Ss046] gi|81239710|gb|ABB60420.1| ribosome releasing factor [Shigella dysenteriae Sd197] gi|81244182|gb|ABB64890.1| ribosome releasing factor [Shigella boydii Sb227] gi|91070816|gb|ABE05697.1| ribosome recycling factor [Escherichia coli UTI89] gi|110341983|gb|ABG68220.1| ribosome recycling factor [Escherichia coli 536] gi|110613772|gb|ABF02439.1| ribosome releasing factor [Shigella flexneri 5 str. 8401] gi|157065317|gb|ABV04572.1| ribosome releasing factor [Escherichia coli HS] gi|157077241|gb|ABV16949.1| ribosome recycling factor [Escherichia coli E24377A] gi|169756403|gb|ACA79102.1| ribosome recycling factor [Escherichia coli ATCC 8739] gi|169887643|gb|ACB01350.1| ribosome recycling factor [Escherichia coli str. K-12 substr. DH10B] gi|170521040|gb|ACB19218.1| ribosome releasing factor [Escherichia coli SMS-3-5] gi|187428908|gb|ACD08182.1| ribosome releasing factor [Shigella boydii CDC 3083-94] gi|187767671|gb|EDU31515.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4196] gi|188014582|gb|EDU52704.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4113] gi|188491287|gb|EDU66390.1| ribosome releasing factor [Escherichia coli 53638] gi|189000476|gb|EDU69462.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4076] gi|189357057|gb|EDU75476.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4401] gi|189360728|gb|EDU79147.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4486] gi|189365640|gb|EDU84056.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4501] gi|189371119|gb|EDU89535.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC869] gi|190903612|gb|EDV63329.1| ribosome releasing factor [Escherichia coli B7A] gi|190906953|gb|EDV66555.1| ribosome releasing factor [Escherichia coli F11] gi|192931131|gb|EDV83734.1| ribosome releasing factor [Escherichia coli E22] gi|192958977|gb|EDV89413.1| ribosome releasing factor [Escherichia coli E110019] gi|194413691|gb|EDX29971.1| ribosome releasing factor [Escherichia coli B171] gi|194418346|gb|EDX34436.1| ribosome releasing factor [Shigella dysenteriae 1012] gi|194421972|gb|EDX37977.1| ribosome releasing factor [Escherichia coli 101-1] gi|208728965|gb|EDZ78566.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4206] gi|208734052|gb|EDZ82739.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4045] gi|208739249|gb|EDZ86931.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4042] gi|209159436|gb|ACI36869.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4115] gi|209745824|gb|ACI71219.1| ribosome releasing factor [Escherichia coli] gi|209745826|gb|ACI71220.1| ribosome releasing factor [Escherichia coli] gi|209745828|gb|ACI71221.1| ribosome releasing factor [Escherichia coli] gi|209745830|gb|ACI71222.1| ribosome releasing factor [Escherichia coli] gi|209745832|gb|ACI71223.1| ribosome releasing factor [Escherichia coli] gi|209910621|dbj|BAG75695.1| ribosome releasing factor [Escherichia coli SE11] gi|215263405|emb|CAS07725.1| ribosome recycling factor [Escherichia coli O127:H6 str. E2348/69] gi|217321359|gb|EEC29783.1| ribosome releasing factor [Escherichia coli O157:H7 str. TW14588] gi|218350369|emb|CAU96052.1| ribosome recycling factor [Escherichia coli 55989] gi|218355168|emb|CAQ87775.1| ribosome recycling factor [Escherichia fergusonii ATCC 35469] gi|218359520|emb|CAQ97058.1| ribosome recycling factor [Escherichia coli IAI1] gi|218363882|emb|CAR01547.1| ribosome recycling factor [Escherichia coli S88] gi|218368578|emb|CAR16315.1| ribosome recycling factor [Escherichia coli IAI39] gi|218425611|emb|CAR06397.1| ribosome recycling factor [Escherichia coli ED1a] gi|218430523|emb|CAR11389.1| ribosome recycling factor [Escherichia coli UMN026] gi|222032002|emb|CAP74741.1| ribosome recycling factor [Escherichia coli LF82] gi|226840697|gb|EEH72699.1| ribosome-recycling factor [Escherichia sp. 1_1_43] gi|226902243|gb|EEH88502.1| ribosome-recycling factor [Escherichia sp. 3_2_53FAA] gi|227838053|gb|EEJ48519.1| ribosome recycling factor [Escherichia coli 83972] gi|238863488|gb|ACR65486.1| ribosome recycling factor [Escherichia coli BW2952] gi|242376003|emb|CAQ30686.1| ribosome recycling factor [Escherichia coli BL21(DE3)] gi|253325845|gb|ACT30447.1| ribosome recycling factor [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972192|gb|ACT37863.1| ribosome releasing factor [Escherichia coli B str. REL606] gi|253976401|gb|ACT42071.1| ribosome releasing factor [Escherichia coli BL21(DE3)] gi|254590705|gb|ACT70066.1| ribosome recycling factor [Escherichia coli O157:H7 str. TW14359] gi|257752031|dbj|BAI23533.1| ribosome recycling factor [Escherichia coli O26:H11 str. 11368] gi|257757551|dbj|BAI29048.1| ribosome recycling factor [Escherichia coli O103:H2 str. 12009] gi|257762677|dbj|BAI34172.1| ribosome recycling factor [Escherichia coli O111:H- str. 11128] gi|260450624|gb|ACX41046.1| ribosome recycling factor [Escherichia coli DH1] gi|281177397|dbj|BAI53727.1| ribosome releasing factor [Escherichia coli SE15] gi|281599527|gb|ADA72511.1| Ribosome recycling factor [Shigella flexneri 2002017] gi|284919947|emb|CBG33002.1| ribosome recycling factor [Escherichia coli 042] gi|290760867|gb|ADD54828.1| Ribosome recycling factor [Escherichia coli O55:H7 str. CB9615] gi|291321282|gb|EFE60724.1| ribosome recycling factor [Escherichia coli B088] gi|291430156|gb|EFF03170.1| frr [Escherichia coli FVEC1412] gi|291430775|gb|EFF03773.1| ribosome recycling factor [Escherichia coli B185] gi|291472515|gb|EFF14997.1| ribosome recycling factor [Escherichia coli B354] gi|294492515|gb|ADE91271.1| ribosome recycling factor [Escherichia coli IHE3034] gi|298281111|gb|EFI22612.1| ribosome-recycling factor [Escherichia coli FVEC1302] gi|299878297|gb|EFI86508.1| ribosome recycling factor [Escherichia coli MS 196-1] gi|300298344|gb|EFJ54729.1| ribosome recycling factor [Escherichia coli MS 185-1] gi|300306582|gb|EFJ61102.1| ribosome recycling factor [Escherichia coli MS 200-1] gi|300317085|gb|EFJ66869.1| ribosome recycling factor [Escherichia coli MS 175-1] gi|300355739|gb|EFJ71609.1| ribosome recycling factor [Escherichia coli MS 198-1] gi|300395747|gb|EFJ79285.1| ribosome recycling factor [Escherichia coli MS 69-1] gi|300405877|gb|EFJ89415.1| ribosome recycling factor [Escherichia coli MS 84-1] gi|300406530|gb|EFJ90068.1| ribosome recycling factor [Escherichia coli MS 45-1] gi|300412843|gb|EFJ96153.1| ribosome recycling factor [Escherichia coli MS 115-1] gi|300420663|gb|EFK03974.1| ribosome recycling factor [Escherichia coli MS 182-1] gi|300450828|gb|EFK14448.1| ribosome recycling factor [Escherichia coli MS 116-1] gi|300456461|gb|EFK19954.1| ribosome recycling factor [Escherichia coli MS 21-1] gi|300460102|gb|EFK23595.1| ribosome recycling factor [Escherichia coli MS 187-1] gi|300523382|gb|EFK44451.1| ribosome recycling factor [Escherichia coli MS 119-7] gi|300531419|gb|EFK52481.1| ribosome recycling factor [Escherichia coli MS 107-1] gi|300839413|gb|EFK67173.1| ribosome recycling factor [Escherichia coli MS 124-1] gi|300843941|gb|EFK71701.1| ribosome recycling factor [Escherichia coli MS 78-1] gi|301075281|gb|EFK90087.1| ribosome recycling factor [Escherichia coli MS 146-1] gi|305850890|gb|EFM51345.1| ribosome recycling factor [Escherichia coli NC101] gi|306908360|gb|EFN38858.1| ribosome recycling factor [Escherichia coli W] gi|307552022|gb|ADN44797.1| ribosome recycling factor [Escherichia coli ABU 83972] gi|307629748|gb|ADN74052.1| ribosome recycling factor [Escherichia coli UM146] gi|308120053|gb|EFO57315.1| ribosome recycling factor [Escherichia coli MS 145-7] gi|309700380|emb|CBI99668.1| ribosome recycling factor [Escherichia coli ETEC H10407] gi|310337770|gb|EFQ02881.1| ribosome recycling factor [Escherichia coli 1827-70] gi|312289551|gb|EFR17445.1| ribosome recycling factor [Escherichia coli 2362-75] gi|312944780|gb|ADR25607.1| ribosome recycling factor [Escherichia coli O83:H1 str. NRG 857C] gi|313646768|gb|EFS11227.1| ribosome recycling factor [Shigella flexneri 2a str. 2457T] gi|315059390|gb|ADT73717.1| ribosome recycling factor [Escherichia coli W] gi|315134862|dbj|BAJ42021.1| ribosome recycling factor [Escherichia coli DH1] gi|315254974|gb|EFU34942.1| ribosome recycling factor [Escherichia coli MS 85-1] gi|315285261|gb|EFU44706.1| ribosome recycling factor [Escherichia coli MS 110-3] gi|315294576|gb|EFU53923.1| ribosome recycling factor [Escherichia coli MS 153-1] gi|315300676|gb|EFU59903.1| ribosome recycling factor [Escherichia coli MS 16-3] gi|315616344|gb|EFU96962.1| ribosome recycling factor [Escherichia coli 3431] gi|320173347|gb|EFW48550.1| Ribosome recycling factor [Shigella dysenteriae CDC 74-1112] gi|320179914|gb|EFW54858.1| Ribosome recycling factor [Shigella boydii ATCC 9905] gi|320186593|gb|EFW61318.1| Ribosome recycling factor [Shigella flexneri CDC 796-83] gi|320190302|gb|EFW64952.1| Ribosome recycling factor [Escherichia coli O157:H7 str. EC1212] gi|320196952|gb|EFW71573.1| Ribosome recycling factor [Escherichia coli WV_060327] gi|320200303|gb|EFW74889.1| Ribosome recycling factor [Escherichia coli EC4100B] gi|320639978|gb|EFX09563.1| ribosome recycling factor [Escherichia coli O157:H7 str. G5101] gi|320644748|gb|EFX13792.1| ribosome recycling factor [Escherichia coli O157:H- str. 493-89] gi|320652904|gb|EFX21142.1| ribosome recycling factor [Escherichia coli O157:H- str. H 2687] gi|320658292|gb|EFX26021.1| ribosome recycling factor [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663602|gb|EFX30886.1| ribosome recycling factor [Escherichia coli O55:H7 str. USDA 5905] gi|320668915|gb|EFX35710.1| ribosome recycling factor [Escherichia coli O157:H7 str. LSU-61] gi|323157991|gb|EFZ44093.1| ribosome recycling factor [Escherichia coli EPECa14] gi|323160209|gb|EFZ46168.1| ribosome recycling factor [Escherichia coli E128010] gi|323165873|gb|EFZ51655.1| ribosome recycling factor [Shigella sonnei 53G] gi|323170963|gb|EFZ56612.1| ribosome recycling factor [Escherichia coli LT-68] gi|323176486|gb|EFZ62078.1| ribosome recycling factor [Escherichia coli 1180] gi|323181679|gb|EFZ67093.1| ribosome recycling factor [Escherichia coli 1357] gi|323190428|gb|EFZ75703.1| ribosome recycling factor [Escherichia coli RN587/1] gi|323380051|gb|ADX52319.1| ribosome recycling factor [Escherichia coli KO11] gi|323935012|gb|EGB31385.1| ribosome recycling protein [Escherichia coli E1520] gi|323939952|gb|EGB36150.1| ribosome recycling protein [Escherichia coli E482] gi|323945647|gb|EGB41696.1| ribosome recycling protein [Escherichia coli H120] gi|323950829|gb|EGB46706.1| ribosome recycling protein [Escherichia coli H252] gi|323955133|gb|EGB50908.1| ribosome recycling protein [Escherichia coli H263] gi|323959933|gb|EGB55580.1| ribosome recycling protein [Escherichia coli H489] gi|323964935|gb|EGB60401.1| ribosome recycling protein [Escherichia coli M863] gi|323970651|gb|EGB65907.1| ribosome recycling protein [Escherichia coli TA007] gi|323975660|gb|EGB70756.1| ribosome recycling protein [Escherichia coli TW10509] gi|324008234|gb|EGB77453.1| ribosome recycling factor [Escherichia coli MS 57-2] gi|324014110|gb|EGB83329.1| ribosome recycling factor [Escherichia coli MS 60-1] gi|324017821|gb|EGB87040.1| ribosome recycling factor [Escherichia coli MS 117-3] gi|324112417|gb|EGC06394.1| ribosome recycling protein [Escherichia fergusonii B253] gi|324118292|gb|EGC12187.1| ribosome recycling protein [Escherichia coli E1167] gi|325496104|gb|EGC93963.1| ribosome recycling factor [Escherichia fergusonii ECD227] gi|326339773|gb|EGD63581.1| Ribosome recycling factor [Escherichia coli O157:H7 str. 1044] gi|326345108|gb|EGD68851.1| Ribosome recycling factor [Escherichia coli O157:H7 str. 1125] gi|327255151|gb|EGE66754.1| ribosome recycling factor [Escherichia coli STEC_7v] gi|330910022|gb|EGH38532.1| ribosome recycling factor [Escherichia coli AA86] gi|331040372|gb|EGI12579.1| ribosome recycling factor [Escherichia coli H736] gi|331046072|gb|EGI18191.1| ribosome recycling factor [Escherichia coli M605] gi|331051531|gb|EGI23580.1| ribosome recycling factor [Escherichia coli M718] gi|331052285|gb|EGI24324.1| ribosome recycling factor [Escherichia coli TA206] gi|331061461|gb|EGI33424.1| ribosome recycling factor [Escherichia coli TA143] gi|331066624|gb|EGI38501.1| ribosome recycling factor [Escherichia coli TA271] gi|331071523|gb|EGI42880.1| ribosome recycling factor [Escherichia coli TA280] gi|331072214|gb|EGI43550.1| ribosome recycling factor [Escherichia coli H591] gi|331081778|gb|EGI52939.1| ribosome recycling factor [Escherichia coli H299] gi|332095214|gb|EGJ00243.1| ribosome recycling factor [Shigella boydii 5216-82] gi|332098804|gb|EGJ03764.1| ribosome recycling factor [Shigella boydii 3594-74] gi|332105198|gb|EGJ08544.1| ribosome-recycling factor [Shigella sp. D9] gi|332341505|gb|AEE54839.1| ribosome recycling factor [Escherichia coli UMNK88] gi|332762066|gb|EGJ92337.1| ribosome recycling factor [Shigella flexneri 2747-71] gi|332762175|gb|EGJ92444.1| ribosome recycling factor [Shigella flexneri 4343-70] gi|332765019|gb|EGJ95247.1| ribosome recycling factor [Shigella flexneri K-671] gi|332768674|gb|EGJ98854.1| ribosome recycling factor [Shigella flexneri 2930-71] gi|333009268|gb|EGK28724.1| ribosome recycling factor [Shigella flexneri K-218] gi|333010666|gb|EGK30099.1| ribosome recycling factor [Shigella flexneri VA-6] gi|333011010|gb|EGK30429.1| ribosome recycling factor [Shigella flexneri K-272] gi|333021805|gb|EGK41054.1| ribosome recycling factor [Shigella flexneri K-227] gi|333022235|gb|EGK41474.1| ribosome recycling factor [Shigella flexneri K-304] Length = 185 Score = 248 bits (633), Expect = 3e-64, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM + K + +RTGR SPS+LD + VE YG+ PL Q+A+VTV + R L Sbjct: 7 KDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLK 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ M +VE+ I S+LGLNP G +R+P+P TEERR L K+ AE++++ Sbjct: 67 INVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD D +K K + SED ++D+QK+TD+ IK I++ +K+ E+M F Sbjct: 127 AVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAALADKEAELMQF 185 >gi|218679110|ref|ZP_03527007.1| ribosome recycling factor [Rhizobium etli CIAT 894] Length = 186 Score = 248 bits (633), Expect = 4e-64, Method: Composition-based stats. Identities = 110/186 (59%), Positives = 139/186 (74%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M++ ID++ +K RM +S K D+ +LRTGR S ++LD V +EAYGS +PLNQVAN+TV Sbjct: 1 MSEGIDIKELKRRMDGAVSAFKSDIASLRTGRASANILDPVTIEAYGSRMPLNQVANITV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPRML VSVWDK MV +V+RGI ESNLGLNPIV+GQ LRIP+PE EERR +LVKVAH Sbjct: 61 PEPRMLSVSVWDKSMVGAVDRGIRESNLGLNPIVDGQNLRIPLPELNEERRKSLVKVAHD 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAEKSK+++R++RRDGMD LKK+ K G +D + +QK+TD TI ID EK+ Sbjct: 121 YAEKSKVAIRHVRRDGMDGLKKAEKDGVIGQDEGRAQSERVQKMTDETISEIDRLLAEKE 180 Query: 181 KEIMHF 186 KEIM Sbjct: 181 KEIMQV 186 >gi|226327052|ref|ZP_03802570.1| hypothetical protein PROPEN_00913 [Proteus penneri ATCC 35198] gi|225204270|gb|EEG86624.1| hypothetical protein PROPEN_00913 [Proteus penneri ATCC 35198] Length = 202 Score = 248 bits (633), Expect = 4e-64, Method: Composition-based stats. Identities = 80/180 (44%), Positives = 116/180 (64%), Gaps = 1/180 (0%) Query: 8 QNIKDRMGDTISFLKK-DMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ ++RM ++ LKK + +RTGR SPS+LD + VE YG+ PLNQVANV + R L Sbjct: 23 KDAQERMDKSVEALKKSQINKVRTGRASPSLLDGIVVEYYGAPTPLNQVANVVAEDGRTL 82 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++V+D+ + +VE+ I S+LGLNP G ++R+P+P TEERR L+KV AE+ + Sbjct: 83 AITVFDRTLAPAVEKAIMASDLGLNPSSAGAIIRVPLPPLTEERRKDLIKVVRGDAEQGR 142 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+RNIRRD D +K K + SED ++DIQK+TD IK ID K+ E+M F Sbjct: 143 VSIRNIRRDANDKVKALLKDKEISEDDERRSQDDIQKLTDMFIKKIDDALALKEAELMEF 202 >gi|16078715|ref|NP_389534.1| ribosome recycling factor [Bacillus subtilis subsp. subtilis str. 168] gi|221309530|ref|ZP_03591377.1| ribosome recycling factor [Bacillus subtilis subsp. subtilis str. 168] gi|221313854|ref|ZP_03595659.1| ribosome recycling factor [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318777|ref|ZP_03600071.1| ribosome recycling factor [Bacillus subtilis subsp. subtilis str. JH642] gi|221323049|ref|ZP_03604343.1| ribosome recycling factor [Bacillus subtilis subsp. subtilis str. SMY] gi|321315419|ref|YP_004207706.1| ribosome recycling factor [Bacillus subtilis BSn5] gi|3122762|sp|P81101|RRF_BACSU RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor; AltName: Full=Vegetative protein 12B; Short=VEG12B gi|2634024|emb|CAB13525.1| ribosome recycling factor [Bacillus subtilis subsp. subtilis str. 168] gi|291484207|dbj|BAI85282.1| ribosome recycling factor [Bacillus subtilis subsp. natto BEST195] gi|320021693|gb|ADV96679.1| ribosome recycling factor [Bacillus subtilis BSn5] Length = 185 Score = 248 bits (633), Expect = 4e-64, Method: Composition-based stats. Identities = 79/180 (43%), Positives = 122/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K++M I+ ++++ T+R GR +PS+LD V VE YG+ PLNQ++++ V E RML Sbjct: 6 LTQTKEKMEKAIAAYQRELATVRAGRANPSLLDKVTVEYYGAQTPLNQLSSINVPEARML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V++ +DK + +E+ I +++LGL P +G ++RI +P TEERR LVKV YAE++K Sbjct: 66 VITPYDKTAIGDIEKAILKADLGLTPTSDGNMIRIAIPALTEERRKELVKVVKKYAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RRD D LKK K+G +ED + + D+QK+TD + IDS ++K+KEIM Sbjct: 126 VAVRNVRRDANDDLKKLEKNGDITEDELRASTEDVQKLTDEYVSKIDSVTKDKEKEIMEV 185 >gi|239832046|ref|ZP_04680375.1| ribosome recycling factor [Ochrobactrum intermedium LMG 3301] gi|239824313|gb|EEQ95881.1| ribosome recycling factor [Ochrobactrum intermedium LMG 3301] Length = 186 Score = 248 bits (633), Expect = 4e-64, Method: Composition-based stats. Identities = 97/186 (52%), Positives = 126/186 (67%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ D+ ++K RM I+ LK D+ LRTGR S S+L+ + +EAYGS +P+NQVAN+TV Sbjct: 1 MSDAFDINDLKRRMEGAINSLKHDLGGLRTGRASASLLEPIVIEAYGSTMPINQVANITV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E RML VSVWDK MV +VER I +S LGLNPI +G LRIP+PE E+RR LVK+AH Sbjct: 61 PESRMLSVSVWDKSMVGAVERAIRDSGLGLNPITDGTTLRIPLPELNEQRRKELVKIAHQ 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE+ +I+ R++RRDGMD LKK K S+D L +QK+TD TI +D K+ Sbjct: 121 YAEQGRIAARHVRRDGMDTLKKLEKDSLISQDDSRVLSEKVQKLTDETIAEMDKIVAVKE 180 Query: 181 KEIMHF 186 EIM Sbjct: 181 GEIMQV 186 >gi|89098609|ref|ZP_01171491.1| ribosome recycling factor [Bacillus sp. NRRL B-14911] gi|89086571|gb|EAR65690.1| ribosome recycling factor [Bacillus sp. NRRL B-14911] Length = 185 Score = 248 bits (633), Expect = 4e-64, Method: Composition-based stats. Identities = 76/180 (42%), Positives = 120/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + N K+RM I +++ ++R GR S S+LD + V+ YG+ P+NQ+A ++V E R+L Sbjct: 6 ISNSKERMTKAIQAYSRELASIRAGRASASLLDRITVDYYGAPTPVNQLAGISVPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +DK ++ +E+ I +S+LGLNP +G +LR+ +P TEERR LVKV +E +K Sbjct: 66 VIQPYDKSILGEIEKAIIKSDLGLNPTNDGNLLRLAIPALTEERRKELVKVVKKESEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD D LKK K+G+ +ED + +DIQK+TD I +DS ++K+KEI+ Sbjct: 126 VAIRNIRRDANDDLKKLEKNGEITEDDLRGYSDDIQKMTDEHITKVDSITKDKEKEILEV 185 >gi|262166334|ref|ZP_06034071.1| ribosome recycling factor [Vibrio mimicus VM223] gi|262170774|ref|ZP_06038452.1| ribosome recycling factor [Vibrio mimicus MB-451] gi|261891850|gb|EEY37836.1| ribosome recycling factor [Vibrio mimicus MB-451] gi|262026050|gb|EEY44718.1| ribosome recycling factor [Vibrio mimicus VM223] Length = 185 Score = 248 bits (633), Expect = 4e-64, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK + +RTGR PS+L + V+ YG+ PLNQVANV + R L Sbjct: 7 KDAQERMEKSVEALKNGLSKIRTGRAHPSLLTGISVDYYGAPTPLNQVANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+++ VE+ I S+LGLNP+ G ++R+P+P TEERR LVK+ AE ++ Sbjct: 67 ITVFDRDLTQKVEKAILMSDLGLNPMSAGTIIRVPLPPLTEERRRDLVKIVRGEAEGGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD + LK K + SED + DIQK+TD+ +K ID K+KE+M Sbjct: 127 AVRNIRRDANNDLKGLLKDKEISEDDERRAQEDIQKLTDAAVKKIDDVLAAKEKELMEV 185 >gi|299067462|emb|CBJ38661.1| Ribosome recycling factor (Ribosome-releasing factor) [Ralstonia solanacearum CMR15] Length = 186 Score = 247 bits (632), Expect = 4e-64, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + +M +I K D+ +RTGR +LD V+V+ YGS VP++QVANV + + R + Sbjct: 8 KSAEQKMQKSIDAFKADLAKVRTGRAHAGLLDHVQVDYYGSMVPISQVANVGLSDARTIS 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K+MV++VE+ I +++LGLNP G+V+R+P+P TEERR L KV + E +K+ Sbjct: 68 VQPWEKKMVSAVEKAIRDADLGLNPATMGEVIRVPMPPLTEERRKELTKVVKSEGEDAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD + KK K SED ++++QK+TD + +D EK KEIM Sbjct: 128 AVRNVRRDANEQFKKLVKDKAISEDDERRGQDEVQKLTDRFVAEVDKLVAEKDKEIMTV 186 >gi|260596592|ref|YP_003209163.1| ribosome recycling factor [Cronobacter turicensis z3032] gi|260215769|emb|CBA28183.1| Ribosome-recycling factor [Cronobacter turicensis z3032] Length = 185 Score = 247 bits (632), Expect = 4e-64, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM + K + +RTGR SPS+LD + VE YG+ PL Q+ANVTV + R L Sbjct: 7 KDAEVRMDKCVEAFKTQISKVRTGRASPSLLDGIVVEYYGTPTPLRQLANVTVEDSRTLK 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ M +VE+ I S+LGLNP G +R+P+P TEERR L+KV AE++++ Sbjct: 67 INVFDRSMSPAVEKAIMASDLGLNPSSAGSDIRVPLPPLTEERRKDLIKVVRGEAEQARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD D +K K + ED ++D+QK+TD+ IK +D+ +K+ E+M F Sbjct: 127 AIRNVRRDANDKVKALLKDKEIGEDEDRRSQDDVQKMTDAAIKKVDAALADKEAELMQF 185 >gi|209549185|ref|YP_002281102.1| ribosome recycling factor [Rhizobium leguminosarum bv. trifolii WSM2304] gi|226749935|sp|B5ZN86|RRF_RHILW RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|209534941|gb|ACI54876.1| ribosome recycling factor [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 186 Score = 247 bits (632), Expect = 4e-64, Method: Composition-based stats. Identities = 111/186 (59%), Positives = 139/186 (74%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M + ID++ +K RM +S K D+ +LRTGR S ++LD V +EAYGS +PLNQVAN+TV Sbjct: 1 MTEGIDIKELKRRMDGAVSAFKSDIASLRTGRASANILDPVTIEAYGSRMPLNQVANITV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPRML VSVWDK MV++VERGI ESNLGLNPIV+GQ LRIP+PE EERR +LVKVAH Sbjct: 61 PEPRMLSVSVWDKSMVSAVERGIRESNLGLNPIVDGQSLRIPLPELNEERRKSLVKVAHD 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAEKSK+++R++RRDGMD LKK+ K G +D + +QK+TD TI ID EK+ Sbjct: 121 YAEKSKVAIRHVRRDGMDGLKKAEKDGVIGQDEGRAQSERVQKMTDETISEIDRLLGEKE 180 Query: 181 KEIMHF 186 KEIM Sbjct: 181 KEIMQV 186 >gi|116792732|gb|ABK26473.1| unknown [Picea sitchensis] Length = 279 Score = 247 bits (632), Expect = 4e-64, Method: Composition-based stats. Identities = 78/179 (43%), Positives = 116/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ +RM T+ +K + ++RTGR SP+ LD V+VE YGS V L +A V+V + L+ Sbjct: 101 EDAIERMEKTLETIKTNFNSIRTGRASPAFLDRVEVEYYGSPVNLKSLAQVSVPDGGTLL 160 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +DK + S+E+ I +SNLGL P +G V+R+ +P+ T ERR L+KV AE+ KI Sbjct: 161 VQPYDKSSLKSIEKAISKSNLGLTPSNDGNVIRLSIPQLTSERRKELLKVVAKIAEEGKI 220 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD + +K K K SED V L D+QK+TD IK +DS +++K+KE+M Sbjct: 221 AIRNIRRDAIKAYEKLEKEKKLSEDNVKDLSGDLQKVTDEFIKKVDSLYKQKEKELMTV 279 >gi|295696146|ref|YP_003589384.1| ribosome recycling factor [Bacillus tusciae DSM 2912] gi|295411748|gb|ADG06240.1| ribosome recycling factor [Bacillus tusciae DSM 2912] Length = 184 Score = 247 bits (632), Expect = 4e-64, Method: Composition-based stats. Identities = 74/180 (41%), Positives = 119/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ ++RM ++ LKK+ ++R GR +P +LD V VE YG+ +P++Q+A++T EPR+L Sbjct: 5 MKQAEERMNKSLQALKKEFASVRAGRATPGLLDKVTVEYYGTSMPIHQLASITAPEPRLL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK +A +E+ I +S+LGL P +GQV+R+ +P+ T+ERR L ++ AE+S+ Sbjct: 65 VIQPWDKGALAEIEKAILKSDLGLTPTNDGQVIRLAIPQLTQERRQELARMVRKLAEESR 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRR+ D ++KS K G SED L+ IQ +TD I+ ID K+KEI Sbjct: 125 VAIRNIRREANDEIRKSEKDGSVSEDEGRRLQERIQGLTDRFIEEIDRLLAAKEKEITEV 184 >gi|262276524|ref|ZP_06054333.1| ribosome recycling factor [Grimontia hollisae CIP 101886] gi|262220332|gb|EEY71648.1| ribosome recycling factor [Grimontia hollisae CIP 101886] Length = 185 Score = 247 bits (632), Expect = 4e-64, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + K+RM ++ LK + +RTGR P++LD + V+ YG+ PL Q+A++ + R L Sbjct: 7 ADAKERMQKSVEALKNTLSKIRTGRAHPALLDGLSVDYYGASTPLKQLASIVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DK + +VE+ I S+LGLNP+ G V+R+P+P TEERR LVK+ AE ++ Sbjct: 67 ITVFDKSITQAVEKAIMTSDLGLNPMSAGTVIRVPLPPLTEERRRDLVKIVRGEAEGGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD LK K + SED ++DIQK+TD+ +K ID+ E K+KE+M Sbjct: 127 AVRNIRRDANSELKALLKEKEISEDEERRGQDDIQKLTDAAVKEIDTILEAKEKELMEV 185 >gi|258620999|ref|ZP_05716033.1| Ribosome-recycling factor [Vibrio mimicus VM573] gi|258586387|gb|EEW11102.1| Ribosome-recycling factor [Vibrio mimicus VM573] Length = 185 Score = 247 bits (632), Expect = 5e-64, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 112/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK + +RTGR PS+L + V+ YG+ PLNQVANV + R L Sbjct: 7 KDAQERMEKSVEALKNGLSKIRTGRAHPSLLTGISVDYYGAPTPLNQVANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+++ VE+ I S+LGLNP+ G ++R+P+P TEERR LVK+ AE ++ Sbjct: 67 ITVFDRDLTQKVEKAILMSDLGLNPMSAGTIIRVPLPPLTEERRRDLVKIVRGEAEGGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD + LK K SED + DIQK+TD+ +K ID K+KE+M Sbjct: 127 AVRNIRRDANNDLKGLLKDKDISEDDERRAQEDIQKLTDAAVKKIDDVLAAKEKELMEV 185 >gi|116251980|ref|YP_767818.1| ribosome recycling factor [Rhizobium leguminosarum bv. viciae 3841] gi|241204507|ref|YP_002975603.1| ribosome recycling factor [Rhizobium leguminosarum bv. trifolii WSM1325] gi|166231215|sp|Q1MH51|RRF_RHIL3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|115256628|emb|CAK07716.1| putative ribosome recycling factor (ribosome releasing factor) [Rhizobium leguminosarum bv. viciae 3841] gi|240858397|gb|ACS56064.1| ribosome recycling factor [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 186 Score = 247 bits (632), Expect = 5e-64, Method: Composition-based stats. Identities = 112/186 (60%), Positives = 140/186 (75%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M++ ID++ +K RM IS K D+ +LRTGR S ++LD V VEAYGS +PLNQVAN+TV Sbjct: 1 MSEGIDIKELKRRMDGAISVFKGDIASLRTGRASANILDPVTVEAYGSRMPLNQVANITV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPRML VSVWDK MV++VERGI ESNLGLNPI++GQ LRIP+PE EERR +LVKVAH Sbjct: 61 PEPRMLSVSVWDKSMVSAVERGIRESNLGLNPIIDGQNLRIPLPELNEERRKSLVKVAHD 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAEKSK+++R++RRDGMD LKK+ K G +D + +QK+TD TI ID EK+ Sbjct: 121 YAEKSKVAIRHVRRDGMDGLKKAEKDGVIGQDESRAQSERVQKMTDETISEIDRLLGEKE 180 Query: 181 KEIMHF 186 KEIM Sbjct: 181 KEIMQV 186 >gi|114569933|ref|YP_756613.1| ribosome recycling factor [Maricaulis maris MCS10] gi|122316100|sp|Q0APW2|RRF_MARMM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|114340395|gb|ABI65675.1| ribosome recycling factor [Maricaulis maris MCS10] Length = 186 Score = 247 bits (632), Expect = 5e-64, Method: Composition-based stats. Identities = 89/186 (47%), Positives = 127/186 (68%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ D ++K RM I L+K+ LRTGR S +L+ +KV+AYG+ P+NQ+ N++V Sbjct: 1 MSDEYDENDLKRRMDGAIESLRKEFAGLRTGRASAGLLEPIKVDAYGTPTPINQLGNISV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPRM+ + VWDK MVA+V++ I S +GLNP++EGQ+LRIP+P EERR + K+A Sbjct: 61 PEPRMITLQVWDKNMVAAVDKAIRNSGIGLNPVMEGQLLRIPIPPLNEERRAEIAKLAGN 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE ++++VRN+RRDGMD LKK K G SED + D+QK+T+ IK ID + K+ Sbjct: 121 YAEHARVAVRNVRRDGMDALKKMEKDGDLSEDEQKAFSEDVQKLTNEAIKRIDENLKSKQ 180 Query: 181 KEIMHF 186 +EIM Sbjct: 181 EEIMQV 186 >gi|188581299|ref|YP_001924744.1| ribosome recycling factor [Methylobacterium populi BJ001] gi|238692901|sp|B1ZLC8|RRF_METPB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|179344797|gb|ACB80209.1| ribosome recycling factor [Methylobacterium populi BJ001] Length = 187 Score = 247 bits (632), Expect = 5e-64, Method: Composition-based stats. Identities = 93/182 (51%), Positives = 128/182 (70%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 DL +IK RM +S L KD+ +LRTGR +PS+LD ++VEAYG+ +P+ QVA V+V EPR Sbjct: 6 FDLGDIKRRMQGAVSSLSKDLGSLRTGRATPSLLDPIQVEAYGASMPMAQVATVSVPEPR 65 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 +L +SVWD+ MV +VE+ I ES+LGLNP+ EGQ +R+ +PE E+RR +VKVAH Y E+ Sbjct: 66 LLSISVWDRSMVTNVEKAIRESDLGLNPMTEGQTIRLRIPEMNEQRRKEMVKVAHKYTEE 125 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++++VR++RRDG+D LKK K G SED ++QK TD I ID K+KEIM Sbjct: 126 ARVAVRHVRRDGLDILKKLEKDGAISEDDEKRQAGEVQKATDDAIAEIDGVLASKEKEIM 185 Query: 185 HF 186 Sbjct: 186 QV 187 >gi|256830146|ref|YP_003158874.1| ribosome recycling factor [Desulfomicrobium baculatum DSM 4028] gi|256579322|gb|ACU90458.1| ribosome recycling factor [Desulfomicrobium baculatum DSM 4028] Length = 184 Score = 247 bits (632), Expect = 5e-64, Method: Composition-based stats. Identities = 78/179 (43%), Positives = 121/179 (67%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ +RM +I L+KD LRTGR S +++D ++VE YG+ PLNQVA+V++ + R + Sbjct: 6 QDCTNRMQKSIDSLEKDFSKLRTGRASTALVDSIRVEYYGTPTPLNQVASVSIPDSRTIS 65 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S WD+ S+E+ I +S+LGL PI +G+ +RI +P TEERR LVK+A Y E++K+ Sbjct: 66 ISPWDRNAFNSIEKAIMKSDLGLTPINDGRAIRINIPVLTEERRKDLVKMAKKYTEEAKV 125 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD D LKK + + SED + ++++QK TD+ +K D+ EK+KEIM Sbjct: 126 AIRNVRRDVNDALKKMHTAKEISEDDLHKAQDEVQKTTDNFVKKADAVLAEKEKEIMEI 184 >gi|23502037|ref|NP_698164.1| ribosome recycling factor [Brucella suis 1330] gi|62290072|ref|YP_221865.1| ribosome recycling factor [Brucella abortus bv. 1 str. 9-941] gi|82699998|ref|YP_414572.1| ribosome recycling factor [Brucella melitensis biovar Abortus 2308] gi|148560306|ref|YP_001259077.1| ribosome recycling factor [Brucella ovis ATCC 25840] gi|161619110|ref|YP_001592997.1| ribosome recycling factor [Brucella canis ATCC 23365] gi|163843423|ref|YP_001627827.1| ribosome recycling factor [Brucella suis ATCC 23445] gi|189024311|ref|YP_001935079.1| ribosome recycling factor [Brucella abortus S19] gi|237815578|ref|ZP_04594575.1| ribosome recycling factor [Brucella abortus str. 2308 A] gi|254689382|ref|ZP_05152636.1| ribosome recycling factor [Brucella abortus bv. 6 str. 870] gi|254693866|ref|ZP_05155694.1| ribosome recycling factor [Brucella abortus bv. 3 str. Tulya] gi|254697517|ref|ZP_05159345.1| ribosome recycling factor [Brucella abortus bv. 2 str. 86/8/59] gi|254701900|ref|ZP_05163728.1| ribosome recycling factor [Brucella suis bv. 5 str. 513] gi|254704445|ref|ZP_05166273.1| ribosome recycling factor [Brucella suis bv. 3 str. 686] gi|254706659|ref|ZP_05168487.1| ribosome recycling factor [Brucella pinnipedialis M163/99/10] gi|254710233|ref|ZP_05172044.1| ribosome recycling factor [Brucella pinnipedialis B2/94] gi|254714229|ref|ZP_05176040.1| ribosome recycling factor [Brucella ceti M644/93/1] gi|254717665|ref|ZP_05179476.1| ribosome recycling factor [Brucella ceti M13/05/1] gi|254719221|ref|ZP_05181032.1| ribosome recycling factor [Brucella sp. 83/13] gi|254730412|ref|ZP_05188990.1| ribosome recycling factor [Brucella abortus bv. 4 str. 292] gi|256031727|ref|ZP_05445341.1| ribosome recycling factor [Brucella pinnipedialis M292/94/1] gi|256061240|ref|ZP_05451391.1| ribosome recycling factor [Brucella neotomae 5K33] gi|256159893|ref|ZP_05457615.1| ribosome recycling factor [Brucella ceti M490/95/1] gi|256255127|ref|ZP_05460663.1| ribosome recycling factor [Brucella ceti B1/94] gi|256257628|ref|ZP_05463164.1| ribosome recycling factor [Brucella abortus bv. 9 str. C68] gi|256369584|ref|YP_003107094.1| ribosome releasing factor [Brucella microti CCM 4915] gi|260546622|ref|ZP_05822361.1| ribosome recycling factor [Brucella abortus NCTC 8038] gi|260566308|ref|ZP_05836778.1| ribosome recycling factor [Brucella suis bv. 4 str. 40] gi|260754900|ref|ZP_05867248.1| ribosome recycling factor [Brucella abortus bv. 6 str. 870] gi|260758117|ref|ZP_05870465.1| ribosome recycling factor [Brucella abortus bv. 4 str. 292] gi|260761943|ref|ZP_05874286.1| ribosome recycling factor [Brucella abortus bv. 2 str. 86/8/59] gi|260883912|ref|ZP_05895526.1| ribosome recycling factor [Brucella abortus bv. 9 str. C68] gi|261214152|ref|ZP_05928433.1| ribosome recycling factor [Brucella abortus bv. 3 str. Tulya] gi|261219506|ref|ZP_05933787.1| ribosome recycling factor [Brucella ceti M13/05/1] gi|261222325|ref|ZP_05936606.1| ribosome recycling factor [Brucella ceti B1/94] gi|261314119|ref|ZP_05953316.1| ribosome recycling factor [Brucella pinnipedialis M163/99/10] gi|261317792|ref|ZP_05956989.1| ribosome recycling factor [Brucella pinnipedialis B2/94] gi|261322001|ref|ZP_05961198.1| ribosome recycling factor [Brucella ceti M644/93/1] gi|261325248|ref|ZP_05964445.1| ribosome recycling factor [Brucella neotomae 5K33] gi|261752464|ref|ZP_05996173.1| ribosome recycling factor [Brucella suis bv. 5 str. 513] gi|261755123|ref|ZP_05998832.1| ribosome recycling factor [Brucella suis bv. 3 str. 686] gi|265984216|ref|ZP_06096951.1| ribosome recycling factor [Brucella sp. 83/13] gi|265988823|ref|ZP_06101380.1| ribosome recycling factor [Brucella pinnipedialis M292/94/1] gi|265998289|ref|ZP_06110846.1| ribosome recycling factor [Brucella ceti M490/95/1] gi|294852498|ref|ZP_06793171.1| ribosome recycling factor [Brucella sp. NVSL 07-0026] gi|297248470|ref|ZP_06932188.1| ribosome recycling factor [Brucella abortus bv. 5 str. B3196] gi|306837970|ref|ZP_07470828.1| ribosome recycling factor [Brucella sp. NF 2653] gi|306841882|ref|ZP_07474562.1| ribosome recycling factor [Brucella sp. BO2] gi|34924970|sp|Q8G0D8|RRF_BRUSU RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|75496735|sp|Q57CY0|RRF_BRUAB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|123547502|sp|Q2YRP7|RRF_BRUA2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166230414|sp|A5VQT0|RRF_BRUO2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|189044046|sp|A9M5H1|RRF_BRUC2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|189044047|sp|B0CGV6|RRF_BRUSI RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238689377|sp|B2S608|RRF_BRUA1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|23347991|gb|AAN30079.1| ribosome recycling factor [Brucella suis 1330] gi|62196204|gb|AAX74504.1| Frr, ribosome recycling factor [Brucella abortus bv. 1 str. 9-941] gi|82616099|emb|CAJ11137.1| Ribosome recycling factor [Brucella melitensis biovar Abortus 2308] gi|148371563|gb|ABQ61542.1| ribosome recycling factor [Brucella ovis ATCC 25840] gi|161335921|gb|ABX62226.1| ribosome recycling factor [Brucella canis ATCC 23365] gi|163674146|gb|ABY38257.1| ribosome recycling factor [Brucella suis ATCC 23445] gi|189019883|gb|ACD72605.1| Ribosome recycling factor [Brucella abortus S19] gi|237788876|gb|EEP63087.1| ribosome recycling factor [Brucella abortus str. 2308 A] gi|255999746|gb|ACU48145.1| ribosome releasing factor [Brucella microti CCM 4915] gi|260095672|gb|EEW79549.1| ribosome recycling factor [Brucella abortus NCTC 8038] gi|260155826|gb|EEW90906.1| ribosome recycling factor [Brucella suis bv. 4 str. 40] gi|260668435|gb|EEX55375.1| ribosome recycling factor [Brucella abortus bv. 4 str. 292] gi|260672375|gb|EEX59196.1| ribosome recycling factor [Brucella abortus bv. 2 str. 86/8/59] gi|260675008|gb|EEX61829.1| ribosome recycling factor [Brucella abortus bv. 6 str. 870] gi|260873440|gb|EEX80509.1| ribosome recycling factor [Brucella abortus bv. 9 str. C68] gi|260915759|gb|EEX82620.1| ribosome recycling factor [Brucella abortus bv. 3 str. Tulya] gi|260920909|gb|EEX87562.1| ribosome recycling factor [Brucella ceti B1/94] gi|260924595|gb|EEX91163.1| ribosome recycling factor [Brucella ceti M13/05/1] gi|261294691|gb|EEX98187.1| ribosome recycling factor [Brucella ceti M644/93/1] gi|261297015|gb|EEY00512.1| ribosome recycling factor [Brucella pinnipedialis B2/94] gi|261301228|gb|EEY04725.1| ribosome recycling factor [Brucella neotomae 5K33] gi|261303145|gb|EEY06642.1| ribosome recycling factor [Brucella pinnipedialis M163/99/10] gi|261742217|gb|EEY30143.1| ribosome recycling factor [Brucella suis bv. 5 str. 513] gi|261744876|gb|EEY32802.1| ribosome recycling factor [Brucella suis bv. 3 str. 686] gi|262552757|gb|EEZ08747.1| ribosome recycling factor [Brucella ceti M490/95/1] gi|264661020|gb|EEZ31281.1| ribosome recycling factor [Brucella pinnipedialis M292/94/1] gi|264662808|gb|EEZ33069.1| ribosome recycling factor [Brucella sp. 83/13] gi|294821087|gb|EFG38086.1| ribosome recycling factor [Brucella sp. NVSL 07-0026] gi|297175639|gb|EFH34986.1| ribosome recycling factor [Brucella abortus bv. 5 str. B3196] gi|306288012|gb|EFM59414.1| ribosome recycling factor [Brucella sp. BO2] gi|306406894|gb|EFM63115.1| ribosome recycling factor [Brucella sp. NF 2653] Length = 186 Score = 247 bits (632), Expect = 5e-64, Method: Composition-based stats. Identities = 95/186 (51%), Positives = 126/186 (67%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ D+ ++K RM ++ LK D+ LRTGR S S+L+ + +EAYGS +P+NQVAN++V Sbjct: 1 MSDAFDINDLKRRMEGAVNALKHDLGGLRTGRASASLLEPITIEAYGSTMPINQVANISV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E RML VSVWDK MV +VER I +S LGLNPI +G LRIP+PE E+RR LVK+AH Sbjct: 61 PESRMLSVSVWDKSMVGAVERAIRDSGLGLNPITDGMTLRIPLPELNEQRRKELVKIAHQ 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE+ +I+ R++RRDGMD LKK K S+D L +QK+TD TI +D K+ Sbjct: 121 YAEQGRIAARHVRRDGMDQLKKLEKDSVISQDESRVLSEKVQKLTDDTIAEMDKIVAVKE 180 Query: 181 KEIMHF 186 EIM Sbjct: 181 GEIMQV 186 >gi|311280859|ref|YP_003943090.1| ribosome recycling factor [Enterobacter cloacae SCF1] gi|308750054|gb|ADO49806.1| ribosome recycling factor [Enterobacter cloacae SCF1] Length = 185 Score = 247 bits (632), Expect = 5e-64, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM + K + +RTGR SPS+LD + VE YG+ PL Q+A+VTV + R L Sbjct: 7 KDAEVRMEKCVEAFKTQISKVRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLK 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ M +VE+ I S+LGLNP G +R+P+P TEERR L K+ AE++++ Sbjct: 67 INVFDRSMSPAVEKAIMASDLGLNPSSAGTDIRVPLPPLTEERRKDLTKIVRGEAEQARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD D +K K + SED ++D+QK+TD+ IK +D+ +K+ E+M F Sbjct: 127 AVRNVRRDANDKVKALLKEKEISEDDDRRSQDDVQKMTDAAIKKVDAALADKEAELMQF 185 >gi|254469349|ref|ZP_05082754.1| ribosome recycling factor [Pseudovibrio sp. JE062] gi|211961184|gb|EEA96379.1| ribosome recycling factor [Pseudovibrio sp. JE062] Length = 185 Score = 247 bits (632), Expect = 5e-64, Method: Composition-based stats. Identities = 98/186 (52%), Positives = 134/186 (72%), Gaps = 1/186 (0%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M++ +D ++ RM I+ LK + LRTGR S SMLD + V+AYG+ +P+NQVA V+V Sbjct: 1 MSE-LDYDDLDRRMNGAITALKHEFAGLRTGRASASMLDTISVDAYGAPMPINQVATVSV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPRML V VWDK MVA+ E+ I ES+LGLNP+V+GQ+LR+P+PE EERR LVKVAH Sbjct: 60 PEPRMLSVQVWDKSMVAATEKAIRESSLGLNPVVDGQILRLPIPELNEERRQELVKVAHK 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE++KI+ R++RRDGMD +KK K+G+ SED S + +QK+TD I +DS +K+ Sbjct: 120 YAEQAKIAARHVRRDGMDTIKKLEKAGEMSEDDARSASDMVQKMTDDIIGEVDSVLAKKE 179 Query: 181 KEIMHF 186 +EI Sbjct: 180 QEIKQV 185 >gi|153009362|ref|YP_001370577.1| ribosome recycling factor [Ochrobactrum anthropi ATCC 49188] gi|166230810|sp|A6X0J4|RRF_OCHA4 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|151561250|gb|ABS14748.1| ribosome recycling factor [Ochrobactrum anthropi ATCC 49188] Length = 186 Score = 247 bits (632), Expect = 5e-64, Method: Composition-based stats. Identities = 97/186 (52%), Positives = 126/186 (67%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ D+ ++K RM I+ LK D+ LRTGR S S+L+ + +EAYGS +P+NQVAN+TV Sbjct: 1 MSDAFDINDLKRRMEGAINSLKHDLNGLRTGRASASLLEPIVIEAYGSTMPINQVANITV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E RML VSVWDK MV +VER I +S LGLNPI +G LRIP+PE E+RR LVK+AH Sbjct: 61 PESRMLSVSVWDKSMVGAVERAIRDSGLGLNPITDGTTLRIPLPELNEQRRKELVKIAHQ 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE+ +I+ R++RRDGMD LKK K S+D L +QK+TD TI +D K+ Sbjct: 121 YAEQGRIAARHVRRDGMDTLKKLEKDSLISQDDGRVLSEKVQKLTDETIAEMDKVVAVKE 180 Query: 181 KEIMHF 186 EIM Sbjct: 181 GEIMQV 186 >gi|158423320|ref|YP_001524612.1| ribosome recycling factor [Azorhizobium caulinodans ORS 571] gi|172047942|sp|A8I468|RRF_AZOC5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|158330209|dbj|BAF87694.1| ribosome recycling factor [Azorhizobium caulinodans ORS 571] Length = 186 Score = 247 bits (632), Expect = 5e-64, Method: Composition-based stats. Identities = 95/186 (51%), Positives = 127/186 (68%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M D+ +IK RM ++ LK+++ LRTGR S S+L+ + V+AYG+++PL QVA V+V Sbjct: 1 MTTAFDIADIKRRMAGAVTSLKQELGGLRTGRASASLLEPITVDAYGANMPLAQVATVSV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPR+L V VWD+ MV +VE+ I +SNLGLNP EGQ LRI +PE EERR LVKVAH Sbjct: 61 PEPRLLSVQVWDRGMVNAVEKAIRDSNLGLNPNTEGQTLRIRIPELNEERRKELVKVAHK 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE ++++VR++RRDGMD LKK K S D + L D+QK TD TI +D K+ Sbjct: 121 YAEAARVAVRHVRRDGMDLLKKLEKDSAISSDDMERLSKDVQKATDETISEVDQTLAHKE 180 Query: 181 KEIMHF 186 KEI+ Sbjct: 181 KEILSV 186 >gi|152976190|ref|YP_001375707.1| ribosome recycling factor [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189044044|sp|A7GRF4|RRF_BACCN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|152024942|gb|ABS22712.1| ribosome recycling factor [Bacillus cytotoxicus NVH 391-98] Length = 185 Score = 247 bits (632), Expect = 5e-64, Method: Composition-based stats. Identities = 76/180 (42%), Positives = 118/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +++ ++M ++ +++ T+R GR S S+LD V+V+ YG+ P+ Q+AN+TV E R+L Sbjct: 6 IKSSTEKMEKAVAAYSRELATVRAGRASASILDKVQVDYYGAPTPVVQLANITVPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +DK + +E+ I +++LGLNP +G V+RI P TEERR LVKV YAE +K Sbjct: 66 VIQPYDKTSIGDIEKAILKADLGLNPSNDGSVIRIAFPALTEERRRELVKVVKKYAEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RN+RRDG D LKK K+G+ +ED + DIQK TD I +D + K++EIM Sbjct: 126 VAIRNVRRDGNDELKKLEKAGEMTEDDLRGYTEDIQKETDKYIAKVDEIAKNKEQEIMEV 185 >gi|16759209|ref|NP_454826.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16763609|ref|NP_459224.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29140759|ref|NP_804101.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62178789|ref|YP_215206.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161504662|ref|YP_001571774.1| ribosome recycling factor [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|161612590|ref|YP_001586555.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167553369|ref|ZP_02347118.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167990104|ref|ZP_02571204.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168230526|ref|ZP_02655584.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168234997|ref|ZP_02660055.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168244985|ref|ZP_02669917.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168263914|ref|ZP_02685887.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168464218|ref|ZP_02698121.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168823247|ref|ZP_02835247.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194445385|ref|YP_002039459.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450690|ref|YP_002044209.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194470770|ref|ZP_03076754.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194737420|ref|YP_002113242.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197251811|ref|YP_002145224.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197261812|ref|ZP_03161886.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198242060|ref|YP_002214180.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200388182|ref|ZP_03214794.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204927412|ref|ZP_03218614.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205351556|ref|YP_002225357.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207855737|ref|YP_002242388.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213163136|ref|ZP_03348846.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213416682|ref|ZP_03349826.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213425945|ref|ZP_03358695.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213580802|ref|ZP_03362628.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213646665|ref|ZP_03376718.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|224582067|ref|YP_002635865.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238911285|ref|ZP_04655122.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289825712|ref|ZP_06544880.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|54039297|sp|P66739|RRF_SALTI RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|54042005|sp|P66738|RRF_SALTY RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|75484798|sp|Q57T36|RRF_SALCH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|189044071|sp|A9MPI9|RRF_SALAR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|189044072|sp|A9N0S0|RRF_SALPB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226749937|sp|B5F8T3|RRF_SALA4 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226749938|sp|B5FJ19|RRF_SALDC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226749939|sp|B5R3I5|RRF_SALEP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226749940|sp|B5RHF7|RRF_SALG2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238689764|sp|B4TYD2|RRF_SALSV RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238690679|sp|B4TK47|RRF_SALHS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238693523|sp|B4SV01|RRF_SALNS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|254809528|sp|C0Q6J5|RRF_SALPC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|25299716|pir||AE0529 ribosome recycling factor [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16418724|gb|AAL19183.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16501500|emb|CAD08677.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Typhi] gi|29136383|gb|AAO67950.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62126422|gb|AAX64125.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|160866009|gb|ABX22632.1| hypothetical protein SARI_02783 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|161361954|gb|ABX65722.1| hypothetical protein SPAB_00281 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194404048|gb|ACF64270.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408994|gb|ACF69213.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194457134|gb|EDX45973.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194712922|gb|ACF92143.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195632657|gb|EDX51111.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197215514|gb|ACH52911.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197240067|gb|EDY22687.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197291879|gb|EDY31229.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197936576|gb|ACH73909.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605280|gb|EDZ03825.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204324077|gb|EDZ09272.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205271337|emb|CAR36130.1| Ribosome recycling factor [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205322189|gb|EDZ10028.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205331572|gb|EDZ18336.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205335095|gb|EDZ21859.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336212|gb|EDZ22976.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205340485|gb|EDZ27249.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205347503|gb|EDZ34134.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206707540|emb|CAR31814.1| Ribosome recycling factor [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224466594|gb|ACN44424.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261245451|emb|CBG23241.1| RRF [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267991909|gb|ACY86794.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301156846|emb|CBW16322.1| Ribosome recycling factor [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911189|dbj|BAJ35163.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320084473|emb|CBY94266.1| Ribosome-recycling factor RRF; Ribosome-releasing factor [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321222197|gb|EFX47269.1| Ribosome recycling factor [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322616043|gb|EFY12960.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620826|gb|EFY17686.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623823|gb|EFY20660.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627271|gb|EFY24062.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322630578|gb|EFY27342.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638204|gb|EFY34905.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640689|gb|EFY37340.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645527|gb|EFY42054.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648179|gb|EFY44646.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322657130|gb|EFY53413.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657500|gb|EFY53772.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663820|gb|EFY60020.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666653|gb|EFY62831.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672189|gb|EFY68301.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676500|gb|EFY72571.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679408|gb|EFY75453.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686265|gb|EFY82249.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322713243|gb|EFZ04814.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323128539|gb|ADX15969.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323193445|gb|EFZ78653.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197533|gb|EFZ82668.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201198|gb|EFZ86267.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209593|gb|EFZ94526.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212155|gb|EFZ96979.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216460|gb|EGA01186.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323223350|gb|EGA07685.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225911|gb|EGA10131.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228548|gb|EGA12677.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236839|gb|EGA20915.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239661|gb|EGA23708.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242292|gb|EGA26321.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249954|gb|EGA33850.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252384|gb|EGA36235.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255667|gb|EGA39420.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262896|gb|EGA46446.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265382|gb|EGA48878.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271831|gb|EGA55249.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326621923|gb|EGE28268.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326626582|gb|EGE32925.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332987171|gb|AEF06154.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 185 Score = 247 bits (631), Expect = 6e-64, Method: Composition-based stats. Identities = 73/179 (40%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM + K + +RTGR SPS+LD + VE YG+ PL Q+A+VTV + R L Sbjct: 7 KDAEVRMEKCVEAFKTQISKVRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLK 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ M +VE+ I S+LGLNP G +R+P+P TEERR L K+ AE++++ Sbjct: 67 INVFDRSMGPAVEKAIMASDLGLNPSSAGTDIRVPLPPLTEERRKDLTKIVRGEAEQARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD D +K K SED + ++QK+TD+ IK +D+ +K+ E+M F Sbjct: 127 AVRNVRRDANDKVKALLKDKAISEDDDRRSQEEVQKMTDAAIKKVDAALADKEAELMQF 185 >gi|308068689|ref|YP_003870294.1| ribosome recycling factor (ribosome releasing factor) [Paenibacillus polymyxa E681] gi|305857968|gb|ADM69756.1| Ribosome recycling factor (Ribosome releasing factor) [Paenibacillus polymyxa E681] Length = 184 Score = 247 bits (631), Expect = 6e-64, Method: Composition-based stats. Identities = 78/179 (43%), Positives = 113/179 (63%), Gaps = 1/179 (0%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM I L++D+ +LR GR +P++LD V+VE YG+ P+NQ+ANV + R L+ Sbjct: 7 KSAEERMQKAIQALQRDLASLRAGRATPALLDRVQVEYYGAMTPVNQLANVNTPDSRTLM 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + WDK +A +ER I +S+LGL P +G +R+ +P TEERR LVK+ E++KI Sbjct: 67 IQPWDKSSLADIERAIQKSDLGLTPSNDGNTIRLSIPALTEERRTDLVKLTKKNGEEAKI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD D +KK KS SED + DIQK TD I +D K+KEIM Sbjct: 127 AIRNIRRDANDDIKKLEKS-DISEDESRKHQEDIQKTTDKFIAEVDKVLAAKEKEIMEV 184 >gi|260775282|ref|ZP_05884179.1| ribosome recycling factor [Vibrio coralliilyticus ATCC BAA-450] gi|260608463|gb|EEX34628.1| ribosome recycling factor [Vibrio coralliilyticus ATCC BAA-450] Length = 185 Score = 247 bits (631), Expect = 6e-64, Method: Composition-based stats. Identities = 77/179 (43%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ ++RM ++ LK ++ +RTGR PS+L + VE YG+ PLNQVANV + R L Sbjct: 7 QDAQERMEKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAPTPLNQVANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DKE+ VE+ I S+LGLNP+ G ++R+P+P TEERR LVK+ AE ++ Sbjct: 67 ITVFDKELTPKVEKAIMTSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD LK K + SED +++IQKITD+ +K +D K+KE+M Sbjct: 127 AIRNIRRDANGELKALLKDKEISEDEDRKGQDEIQKITDAAVKQVDEVLAAKEKELMEV 185 >gi|115524563|ref|YP_781474.1| ribosome recycling factor [Rhodopseudomonas palustris BisA53] gi|122296187|sp|Q07NJ0|RRF_RHOP5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|115518510|gb|ABJ06494.1| ribosome recycling factor [Rhodopseudomonas palustris BisA53] Length = 187 Score = 247 bits (631), Expect = 6e-64, Method: Composition-based stats. Identities = 92/182 (50%), Positives = 130/182 (71%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D+ +K RM L+ ++ LRTGR S SML+ V+V+AYG+H+PL QVA ++V EPR Sbjct: 6 FDISELKRRMQGATHALQHELGGLRTGRASSSMLEPVQVDAYGTHMPLIQVATISVPEPR 65 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 +L V VWDK M+ +VE+ I +SNLGL+P EGQV+R+ +PE EERR LVKVAH YAE Sbjct: 66 LLSVQVWDKSMIKAVEKAIVDSNLGLSPSTEGQVIRLRIPELNEERRKELVKVAHKYAEA 125 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++++VR++RRDG+D LKK K+ + SED L +D+QK+TD+TI+ +D K+KEI+ Sbjct: 126 ARVAVRHVRRDGLDTLKKLEKNHEISEDDQERLAHDVQKVTDATIQEVDQLLAAKEKEIL 185 Query: 185 HF 186 Sbjct: 186 TV 187 >gi|296330867|ref|ZP_06873342.1| ribosome recycling factor [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674385|ref|YP_003866057.1| ribosome recycling factor [Bacillus subtilis subsp. spizizenii str. W23] gi|296151872|gb|EFG92746.1| ribosome recycling factor [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412629|gb|ADM37748.1| ribosome recycling factor [Bacillus subtilis subsp. spizizenii str. W23] Length = 185 Score = 247 bits (631), Expect = 6e-64, Method: Composition-based stats. Identities = 79/180 (43%), Positives = 121/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K++M I+ ++++ T+R GR +PS+LD V VE YG+ PLNQ++++ V E RML Sbjct: 6 LTQTKEKMEKAIAAYQRELATVRAGRANPSLLDKVTVEYYGAQTPLNQLSSINVPEARML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV+ +DK + +E+ I +++LG+ P +G ++RI +P TEERR LVKV YAE +K Sbjct: 66 VVTPYDKSAIGDIEKAILKADLGITPTSDGNMIRIAIPALTEERRKELVKVVKKYAEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RRD D LKK K+G +ED + + D+QK+TD + IDS ++K+KEIM Sbjct: 126 VAVRNVRRDANDDLKKLEKNGDITEDELRASTEDVQKLTDEYVSKIDSVTKDKEKEIMEV 185 >gi|229086377|ref|ZP_04218553.1| Ribosome-recycling factor [Bacillus cereus Rock3-44] gi|228696893|gb|EEL49702.1| Ribosome-recycling factor [Bacillus cereus Rock3-44] Length = 185 Score = 247 bits (631), Expect = 6e-64, Method: Composition-based stats. Identities = 75/180 (41%), Positives = 115/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ ++M ++ +++ ++R GR S S LD V+V+ YG+ P+ Q+AN+TV E R+L Sbjct: 6 LKSANEKMEKAVAAYSRELASVRAGRASASALDKVQVDYYGAPTPVVQLANITVPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +DK + +E+ I +++LGLNP +G V+RI P TEERR LVK YAE++K Sbjct: 66 VIQPYDKTSIGDIEKAILKADLGLNPSNDGSVIRIAFPALTEERRKDLVKTVKKYAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RRD D LKK K+ + +ED + DIQK TD I +D + K+KEIM Sbjct: 126 VAVRNVRRDANDDLKKLEKASEITEDDLRGYAEDIQKETDKYIAKVDEIAKNKEKEIMEV 185 >gi|146310374|ref|YP_001175448.1| ribosome recycling factor [Enterobacter sp. 638] gi|166991556|sp|A4W6R7|RRF_ENT38 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|145317250|gb|ABP59397.1| ribosome recycling factor [Enterobacter sp. 638] Length = 185 Score = 247 bits (631), Expect = 7e-64, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM + K + +RTGR SPS+LD + VE YG+ PL Q+A+VTV + R L Sbjct: 7 KDAEVRMEKCVEAFKNQISKVRTGRASPSLLDGIIVEYYGTPTPLRQLASVTVEDTRTLK 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ + +VE+ I S+LGLNP G +R+P+P TEERR L+KV AE +++ Sbjct: 67 INVFDRSLGPAVEKAIMASDLGLNPSSAGTDIRVPLPALTEERRKELIKVVRGEAEGARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD D +K K + SED ++D+QK+TD+ IK +D+ +K+ E+M F Sbjct: 127 AVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKLDAALADKEAELMQF 185 >gi|308173615|ref|YP_003920320.1| ribosome recycling factor [Bacillus amyloliquefaciens DSM 7] gi|307606479|emb|CBI42850.1| ribosome recycling factor [Bacillus amyloliquefaciens DSM 7] gi|328911756|gb|AEB63352.1| ribosome recycling factor [Bacillus amyloliquefaciens LL3] Length = 185 Score = 247 bits (631), Expect = 7e-64, Method: Composition-based stats. Identities = 78/180 (43%), Positives = 121/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K+RM ++ +++ ++R GR +PS+LD V VE YG+ PLNQ++++ V E RML Sbjct: 6 LTQTKERMEKAVAAYSRELASVRAGRANPSLLDKVTVEYYGAQTPLNQLSSINVPEARML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV+ +DK + +E+ I +++LG+ P +G ++RI +P TEERR LVKV YAE++K Sbjct: 66 VVTPYDKTAIGDIEKAILKADLGVTPTSDGTIIRIAIPALTEERRKELVKVVKKYAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RRD D LKK K+G +ED + + D+QK+TD + IDS ++K+KEIM Sbjct: 126 VAVRNVRRDSNDELKKLEKNGDITEDELRASSEDVQKLTDEFVSKIDSVTKDKEKEIMEV 185 >gi|197286128|ref|YP_002152000.1| ribosome recycling factor [Proteus mirabilis HI4320] gi|227357247|ref|ZP_03841604.1| ribosome recycling factor [Proteus mirabilis ATCC 29906] gi|238690100|sp|B4F2D0|RRF_PROMH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|194683615|emb|CAR44513.1| ribosome recycling factor [Proteus mirabilis HI4320] gi|227162510|gb|EEI47499.1| ribosome recycling factor [Proteus mirabilis ATCC 29906] Length = 185 Score = 247 bits (631), Expect = 7e-64, Method: Composition-based stats. Identities = 77/179 (43%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK + +RTGR SP++LD + VE YG+ PLNQVANV + R L Sbjct: 7 KDAQERMDKSVEALKSQINKVRTGRASPNLLDGIVVEYYGAPTPLNQVANVVAEDGRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ + +VE+ I S+LGLNP G ++R+P+P TEERR L+KV AE+ ++ Sbjct: 67 ITVFDRTLAPAVEKAIMASDLGLNPSSAGAIIRVPLPPLTEERRKDLIKVVRGDAEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RNIRRD D +K K + SED +++IQK+TD IK ID K+ E+M F Sbjct: 127 SIRNIRRDANDKIKALLKDKEISEDDERRSQDEIQKLTDMFIKKIDEALTLKEAELMEF 185 >gi|225627627|ref|ZP_03785664.1| ribosome recycling factor [Brucella ceti str. Cudo] gi|260168860|ref|ZP_05755671.1| ribosome recycling factor [Brucella sp. F5/99] gi|261758348|ref|ZP_06002057.1| ribosome recycling factor [Brucella sp. F5/99] gi|225617632|gb|EEH14677.1| ribosome recycling factor [Brucella ceti str. Cudo] gi|261738332|gb|EEY26328.1| ribosome recycling factor [Brucella sp. F5/99] Length = 186 Score = 247 bits (631), Expect = 7e-64, Method: Composition-based stats. Identities = 95/186 (51%), Positives = 126/186 (67%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ D+ ++K RM ++ LK D+ LRTGR S S+L+ + +EAYGS +P+NQVAN++V Sbjct: 1 MSDAFDINDLKRRMEGAVNALKHDLGGLRTGRASASLLEPITIEAYGSTMPINQVANISV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E RML VSVWDK MV +VER I +S LGLNPI +G LRIP+PE E+RR LVK+AH Sbjct: 61 PESRMLSVSVWDKSMVGAVERAIRDSGLGLNPITDGMTLRIPLPELNEQRRKELVKIAHR 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE+ +I+ R++RRDGMD LKK K S+D L +QK+TD TI +D K+ Sbjct: 121 YAEQGRIAARHVRRDGMDQLKKLEKDSVISQDESRVLSEKVQKLTDDTIAEMDKIVAVKE 180 Query: 181 KEIMHF 186 EIM Sbjct: 181 GEIMQV 186 >gi|156935313|ref|YP_001439229.1| hypothetical protein ESA_03170 [Cronobacter sakazakii ATCC BAA-894] gi|156533567|gb|ABU78393.1| hypothetical protein ESA_03170 [Cronobacter sakazakii ATCC BAA-894] Length = 173 Score = 247 bits (631), Expect = 7e-64, Method: Composition-based stats. Identities = 73/173 (42%), Positives = 111/173 (64%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M + K + +RTGR SPS+LD + VE YG+ PL Q+ANVTV + R L ++V+D+ Sbjct: 1 MDKCVEAFKTQISKVRTGRASPSLLDGIVVEYYGTPTPLRQLANVTVEDSRTLKINVFDR 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 M +VE+ I S+LGLNP G +R+P+P TEERR L+KV AE++++++RN+R Sbjct: 61 SMGPAVEKAIMASDLGLNPSSAGSDIRVPLPPLTEERRKDLIKVVRGEAEQARVAIRNVR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RD D +K K + ED ++D+QK+TD+ IK +D+ +K+ E+M F Sbjct: 121 RDANDKVKALLKDKEIGEDEDRRSQDDVQKLTDAAIKKVDAALADKEAELMQF 173 >gi|54297625|ref|YP_123994.1| ribosome recycling factor [Legionella pneumophila str. Paris] gi|60390234|sp|Q5X4K0|RRF_LEGPA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|53751410|emb|CAH12828.1| Ribosome recycling factor [Legionella pneumophila str. Paris] Length = 185 Score = 247 bits (631), Expect = 7e-64, Method: Composition-based stats. Identities = 79/179 (44%), Positives = 112/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ + RM TI L DM +RTGR + S+LD V V+ YGS PL+QVAN+T + R ++ Sbjct: 7 QDSEKRMKKTIEALHSDMSKIRTGRANASLLDHVMVDYYGSPTPLSQVANITTSDSRTIL 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+ W+K MVA++E+ I S+LGLNP G +R+P+P TEERR L+KV E+ ++ Sbjct: 67 VTPWEKSMVAAIEKAILNSDLGLNPATAGTAIRVPMPPLTEERRKELIKVVRHEGEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RNIRRD + LK+ K SED IQK+TD I +D+ EK+K++M Sbjct: 127 SIRNIRRDANNQLKELVKEKAISEDDERRAAEAIQKLTDRYISEVDAVLAEKEKDLMEI 185 >gi|310641584|ref|YP_003946342.1| ribosome-recycling factor [Paenibacillus polymyxa SC2] gi|309246534|gb|ADO56101.1| Ribosome-recycling factor [Paenibacillus polymyxa SC2] Length = 184 Score = 246 bits (630), Expect = 7e-64, Method: Composition-based stats. Identities = 77/179 (43%), Positives = 113/179 (63%), Gaps = 1/179 (0%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM I L++D+ +LR GR +P++LD V+VE YG+ P+NQ+AN+ + R L+ Sbjct: 7 KSAEERMQKAIQALQRDLSSLRAGRATPALLDRVQVEYYGAMTPVNQLANINTPDSRTLM 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + WDK +A +ER I +S+LGL P +G +R+ +P TEERR LVK+ E++KI Sbjct: 67 IQPWDKSSLADIERAIQKSDLGLTPSNDGNTIRLSIPALTEERRTDLVKLTKKSGEEAKI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD D +KK KS SED + DIQK TD I +D K+KEIM Sbjct: 127 AIRNIRRDANDDIKKMEKS-DISEDESRKHQEDIQKTTDKFIAEVDKVLAAKEKEIMEV 184 >gi|71278867|ref|YP_268298.1| ribosome recycling factor [Colwellia psychrerythraea 34H] gi|123633168|sp|Q485G7|RRF_COLP3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|71144607|gb|AAZ25080.1| ribosome recycling factor [Colwellia psychrerythraea 34H] Length = 185 Score = 246 bits (630), Expect = 7e-64, Method: Composition-based stats. Identities = 82/186 (44%), Positives = 118/186 (63%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 ++++I ++ +DRMG +I LK + +RTGR S+LD + VE YG PLNQV NV+V Sbjct: 2 IDEII--EDAQDRMGKSIEALKTSLTKIRTGRAHASLLDNIVVEYYGMDTPLNQVGNVSV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R L ++V+DK M+++VE+ I +S+LGLNP G ++RIP+P TEERR LVKV Sbjct: 60 PDARNLSITVFDKSMISAVEKAIMKSDLGLNPQSNGTLIRIPLPPLTEERRKDLVKVVRG 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE K+++RNIRRD K K + SED E+ IQKITD +K +D +K+ Sbjct: 120 EAEGGKVAIRNIRRDANSDFKSLLKEKEISEDDHHQAEDSIQKITDVFVKQVDEVLVKKE 179 Query: 181 KEIMHF 186 E+M Sbjct: 180 AELMEI 185 >gi|209526796|ref|ZP_03275317.1| ribosome recycling factor [Arthrospira maxima CS-328] gi|209492757|gb|EDZ93091.1| ribosome recycling factor [Arthrospira maxima CS-328] Length = 187 Score = 246 bits (630), Expect = 7e-64, Method: Composition-based stats. Identities = 67/187 (35%), Positives = 114/187 (60%), Gaps = 1/187 (0%) Query: 1 MNQV-IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVT 59 M++V + L ++++ M + + T+RTGR + S+LD + VE YGS PL +A+++ Sbjct: 1 MSEVLVKLADVENLMKKALESTGRSFNTIRTGRANASLLDRITVEYYGSPTPLKSLASIS 60 Query: 60 VLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 + + + +D+ + ++E+ I S++GL P +G V+R+ +P TE RR VK+A Sbjct: 61 TPDASTITIQPFDRNSLNNIEKAISMSDVGLTPNNDGSVVRLNIPPLTEARRQEFVKLAG 120 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 YAE+ ++SVRNIRRD +D ++K K+G SED +++ IQK+TD +D E K Sbjct: 121 KYAEEGRVSVRNIRRDAIDSVRKQEKNGDISEDESRDIQDKIQKLTDKYTAKVDELLEAK 180 Query: 180 KKEIMHF 186 +K+IM Sbjct: 181 EKDIMTV 187 >gi|182677297|ref|YP_001831443.1| ribosome recycling factor [Beijerinckia indica subsp. indica ATCC 9039] gi|238691217|sp|B2ID97|RRF_BEII9 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|182633180|gb|ACB93954.1| ribosome recycling factor [Beijerinckia indica subsp. indica ATCC 9039] Length = 186 Score = 246 bits (630), Expect = 7e-64, Method: Composition-based stats. Identities = 90/186 (48%), Positives = 124/186 (66%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ D+ ++K RM I+ LK ++ LRTGR + S+L+ V V+AYG +PLNQVA ++V Sbjct: 1 MSAEFDISDLKRRMQGAIATLKHELGGLRTGRATASLLEPVHVDAYGQSLPLNQVATISV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E RML V VWDK MV V++ I +SNLGL+P VEGQ+LRI +PE E+RR + KVAH Sbjct: 61 AEARMLSVQVWDKGMVGPVDKAIRDSNLGLSPTVEGQILRIRIPELNEQRRKEMAKVAHK 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE++K++VR++RRDG+D LKK K ED +IQK+TD + +D K+ Sbjct: 121 YAEEAKVAVRHVRRDGIDTLKKLLKDKAIGEDDEKRHAAEIQKVTDQFVGEVDQALAAKE 180 Query: 181 KEIMHF 186 KEIM Sbjct: 181 KEIMQV 186 >gi|52841939|ref|YP_095738.1| ribosome recycling factor [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|54294594|ref|YP_127009.1| ribosome recycling factor [Legionella pneumophila str. Lens] gi|148359246|ref|YP_001250453.1| ribosome recycling factor [Legionella pneumophila str. Corby] gi|296107291|ref|YP_003618991.1| Ribosome recycling factor [Legionella pneumophila 2300/99 Alcoy] gi|60390233|sp|Q5WVZ0|RRF_LEGPL RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|60390237|sp|Q5ZUT1|RRF_LEGPH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166230796|sp|A5ICK7|RRF_LEGPC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|52629050|gb|AAU27791.1| ribosome recycling factor [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53754426|emb|CAH15910.1| Ribosome recycling factor [Legionella pneumophila str. Lens] gi|148281019|gb|ABQ55107.1| ribosome recycling factor [Legionella pneumophila str. Corby] gi|295649192|gb|ADG25039.1| Ribosome recycling factor [Legionella pneumophila 2300/99 Alcoy] gi|307610406|emb|CBW99976.1| ribosome recycling factor [Legionella pneumophila 130b] Length = 185 Score = 246 bits (630), Expect = 7e-64, Method: Composition-based stats. Identities = 79/179 (44%), Positives = 112/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ + RM TI L DM +RTGR + S+LD V V+ YGS PL+QVAN+T + R ++ Sbjct: 7 QDSEKRMKKTIEALHTDMSKIRTGRANASLLDHVMVDYYGSPTPLSQVANITTSDSRTIL 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+ W+K MVA++E+ I S+LGLNP G +R+P+P TEERR L+KV E+ ++ Sbjct: 67 VTPWEKSMVAAIEKAILNSDLGLNPATAGTAIRVPMPPLTEERRKELIKVVRHEGEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RNIRRD + LK+ K SED IQK+TD I +D+ EK+K++M Sbjct: 127 SIRNIRRDANNQLKELVKEKAISEDDERRAAEAIQKLTDRYISEVDAVLAEKEKDLMEI 185 >gi|222148859|ref|YP_002549816.1| ribosome recycling factor [Agrobacterium vitis S4] gi|254809485|sp|B9JX30|RRF_AGRVS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|221735845|gb|ACM36808.1| ribosome recycling factor [Agrobacterium vitis S4] Length = 186 Score = 246 bits (630), Expect = 7e-64, Method: Composition-based stats. Identities = 111/186 (59%), Positives = 136/186 (73%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M IDL +IK RM I+ K D+ +LRTGR S ++LD V VEAYGS V LN VAN+TV Sbjct: 1 MTAGIDLNDIKRRMDGAINAFKSDLASLRTGRASANILDPVMVEAYGSRVALNTVANITV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPRML VS+WDK MV +V+R I ESNLGLNPIV+GQ LRIP+PE EERR +LVKVAH Sbjct: 61 PEPRMLGVSIWDKSMVGAVDRAIRESNLGLNPIVDGQNLRIPLPELNEERRKSLVKVAHG 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE SK+++R++RRDGMD LKK+ K G+ +D SL +QK+TD TI +ID EK+ Sbjct: 121 YAENSKVAIRHVRRDGMDSLKKAEKDGEIGKDDARSLSEKLQKMTDDTISDIDRLLAEKE 180 Query: 181 KEIMHF 186 KEIM Sbjct: 181 KEIMQV 186 >gi|114797846|ref|YP_760475.1| ribosome recycling factor [Hyphomonas neptunium ATCC 15444] gi|123028025|sp|Q0C1B8|RRF_HYPNA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|114738020|gb|ABI76145.1| ribosome recycling factor [Hyphomonas neptunium ATCC 15444] Length = 184 Score = 246 bits (630), Expect = 8e-64, Method: Composition-based stats. Identities = 87/179 (48%), Positives = 126/179 (70%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+I+ RM ++ L + LRTGR S ++LD ++V AYG PL+QVA+VTV + RML Sbjct: 6 QDIERRMEGALASLASEFAGLRTGRASVNLLDSIQVPAYGGVTPLSQVASVTVSDTRMLS 65 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+VWDK +V + +R I +S LGLNP+++GQ LRIP+P EERR+ L K+A YAE +++ Sbjct: 66 VNVWDKTVVGAADRAIRDSGLGLNPVMDGQTLRIPIPPLNEERRVELTKIAGKYAEAARV 125 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRDGMD LKK+ K G+ SED +L ++QK+TD+ +K +D + K+ EIM Sbjct: 126 AVRNVRRDGMDDLKKAEKDGEISEDRHRALTEEVQKLTDAFVKRVDEALKAKEAEIMQV 184 >gi|257792211|ref|YP_003182817.1| ribosome recycling factor [Eggerthella lenta DSM 2243] gi|317490131|ref|ZP_07948620.1| ribosome recycling factor [Eggerthella sp. 1_3_56FAA] gi|325833584|ref|ZP_08166033.1| ribosome recycling factor [Eggerthella sp. HGA1] gi|257476108|gb|ACV56428.1| ribosome recycling factor [Eggerthella lenta DSM 2243] gi|316910836|gb|EFV32456.1| ribosome recycling factor [Eggerthella sp. 1_3_56FAA] gi|325485508|gb|EGC87977.1| ribosome recycling factor [Eggerthella sp. HGA1] Length = 185 Score = 246 bits (630), Expect = 8e-64, Method: Composition-based stats. Identities = 64/178 (35%), Positives = 106/178 (59%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 ++RM + L ++RTGR + +LD ++V+ YG P+NQ+A V + MLV+ Sbjct: 8 QAEERMEKALGSLGDAFASVRTGRANAMVLDRIRVDYYGVPTPVNQMAGVKTPDAHMLVI 67 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 WDK ++ ++E I +S+LG+ P +G V+R+P P TEERR LVK YAE+++++ Sbjct: 68 EPWDKGVLGAIEHAILQSDLGVTPSNDGSVIRLPFPALTEERRRELVKQCKGYAEEARVA 127 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 VRN RRD ++++ K ED + ++QK+TD I +D F++K+ E+M Sbjct: 128 VRNARRDANSAIERAVKEDSLPEDDERRGQAEVQKLTDKYIAEVDEAFKKKEAEVMEI 185 >gi|92117244|ref|YP_576973.1| ribosome recycling factor [Nitrobacter hamburgensis X14] gi|91800138|gb|ABE62513.1| ribosome recycling factor [Nitrobacter hamburgensis X14] Length = 194 Score = 246 bits (630), Expect = 8e-64, Method: Composition-based stats. Identities = 98/182 (53%), Positives = 127/182 (69%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D+ +K RM I LK ++ LRTGR + SML+ V+VEAYGSH+PLNQVA ++V E R Sbjct: 13 FDINELKRRMQGAIQSLKHELGGLRTGRAAASMLEPVQVEAYGSHMPLNQVATISVPESR 72 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 +L V VWDK MV +VE+ I +SNLGL+P EGQVLR+ +PE EERR LVKVAH YAE Sbjct: 73 LLSVQVWDKSMVKAVEKAIVDSNLGLSPATEGQVLRLRIPELNEERRKELVKVAHKYAEA 132 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +K++VR++RRDG+D +KK K+ + SED L ND+QK TD I ID K+KEI+ Sbjct: 133 AKVAVRHVRRDGLDTIKKLEKNHEISEDDEKRLANDVQKATDGVISEIDELLAGKEKEIL 192 Query: 185 HF 186 Sbjct: 193 TV 194 >gi|307729334|ref|YP_003906558.1| ribosome recycling factor [Burkholderia sp. CCGE1003] gi|307583869|gb|ADN57267.1| ribosome recycling factor [Burkholderia sp. CCGE1003] Length = 186 Score = 246 bits (630), Expect = 8e-64, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + + +M +I K D+ +RTGR +LD ++ + YGS VP++QVAN+T+++ R + Sbjct: 8 KGAEQKMQRSIDAFKNDLSKIRTGRAHTGLLDHIQCDYYGSPVPISQVANLTLIDARTIG 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K+MV VE+ I ES+LGLNP +G V+R+P+P TEERR L KV + AE +K+ Sbjct: 68 VQPWEKKMVPVVEKAIRESDLGLNPATQGDVIRVPMPALTEERRRELTKVVKSEAETAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD + LKK K + SED +D+QK+TD + ID K+ EIM Sbjct: 128 AVRNLRRDANEQLKKLVKDKEISEDDERRAGDDVQKLTDRFVAEIDKLVATKEAEIMTV 186 >gi|323497979|ref|ZP_08102988.1| ribosome recycling factor [Vibrio sinaloensis DSM 21326] gi|323317024|gb|EGA70026.1| ribosome recycling factor [Vibrio sinaloensis DSM 21326] Length = 185 Score = 246 bits (630), Expect = 8e-64, Method: Composition-based stats. Identities = 77/179 (43%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ K+RM ++ LK ++ +RTGR PS+L + VE YG+ PLNQVANV + R L Sbjct: 7 QDAKERMDKSVEALKNNLSKVRTGRAHPSLLSGINVEYYGAPTPLNQVANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DKE+ VE+ I S+LGLNP+ G ++R+P+P TEERR LVK+ AE ++ Sbjct: 67 ITVFDKELTPKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD LK K + SED +++IQK+TD+ +K +D K+KE+M Sbjct: 127 AIRNIRRDANGELKALLKDKEISEDEDRKGQDEIQKLTDAAVKQVDEVLAAKEKELMEV 185 >gi|292489224|ref|YP_003532111.1| ribosome recycling factor [Erwinia amylovora CFBP1430] gi|291554658|emb|CBA22349.1| Ribosome recycling factor [Erwinia amylovora CFBP1430] gi|312173385|emb|CBX81639.1| Ribosome recycling factor [Erwinia amylovora ATCC BAA-2158] Length = 195 Score = 246 bits (630), Expect = 8e-64, Method: Composition-based stats. Identities = 77/179 (43%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM + K + +RTGR SPS+LD + V+ YGS PL Q+A+VTV + R L Sbjct: 17 KDAETRMEKCVEAFKNHISKIRTGRASPSILDGIMVDYYGSPTPLRQLASVTVEDSRTLK 76 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ + A+VE+ I S+LGLNP G +R+P+P TEERR L+KV AE+ ++ Sbjct: 77 INVFDRSIGAAVEKAIMTSDLGLNPSSAGSDIRVPLPALTEERRKDLIKVVRGEAEQGRV 136 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRN+RRD D LK K + SED + D+QK+TD IK +D+ +K+ E+M F Sbjct: 137 SVRNVRRDANDKLKALLKDKEISEDDDRRAQEDVQKMTDIFIKKVDASLADKETELMDF 195 >gi|206578649|ref|YP_002240340.1| ribosome recycling factor [Klebsiella pneumoniae 342] gi|238893168|ref|YP_002917902.1| ribosome recycling factor [Klebsiella pneumoniae NTUH-K2044] gi|262044757|ref|ZP_06017804.1| ribosome recycling factor [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288937046|ref|YP_003441105.1| ribosome recycling factor [Klebsiella variicola At-22] gi|290512467|ref|ZP_06551833.1| ribosome recycling factor [Klebsiella sp. 1_1_55] gi|330001650|ref|ZP_08304076.1| ribosome recycling factor [Klebsiella sp. MS 92-3] gi|226749933|sp|B5Y1J9|RRF_KLEP3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|206567707|gb|ACI09483.1| ribosome recycling factor [Klebsiella pneumoniae 342] gi|238545484|dbj|BAH61835.1| ribosome releasing factor [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259037907|gb|EEW39131.1| ribosome recycling factor [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288891755|gb|ADC60073.1| ribosome recycling factor [Klebsiella variicola At-22] gi|289774808|gb|EFD82810.1| ribosome recycling factor [Klebsiella sp. 1_1_55] gi|328537592|gb|EGF63812.1| ribosome recycling factor [Klebsiella sp. MS 92-3] Length = 185 Score = 246 bits (630), Expect = 8e-64, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 116/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM + K + +RTGR SPS+LD + VE YG+ PL Q+A+VTV + R L Sbjct: 7 KDAEIRMEKCVEAFKNQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLK 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ M A+VE+ I S+LGLNP G +R+P+P TEERR L K+ AE++++ Sbjct: 67 INVFDRSMSAAVEKAIMASDLGLNPSSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD D +K K + SED ++D+QK+TD+ IK +D+ +K+ E+M F Sbjct: 127 AVRNVRRDANDKVKALLKEKEISEDDDRRSQDDVQKMTDAAIKKVDAALADKEAELMQF 185 >gi|89092092|ref|ZP_01165047.1| ribosome recycling factor [Oceanospirillum sp. MED92] gi|89083827|gb|EAR63044.1| ribosome recycling factor [Oceanospirillum sp. MED92] Length = 185 Score = 246 bits (630), Expect = 8e-64, Method: Composition-based stats. Identities = 74/186 (39%), Positives = 116/186 (62%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ Q+ +RM ++ L + +RTGR PS+L+ ++V YGS VPL+QVAN++V Sbjct: 2 LNEIT--QDATERMQKSVEALVNNFKKIRTGRAHPSILEGIQVSYYGSDVPLSQVANISV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R L + W+K MV +E+ I S+LGLNP G+ +R+P+P TEE R +K A A Sbjct: 60 EDGRTLSIVPWEKPMVPVIEKAIMTSDLGLNPATAGENIRVPMPPLTEETRKGYIKQARA 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE +++++RNIRRD LK K + +ED E+ +QKITD + +DS E+K+ Sbjct: 120 EAENARVAIRNIRRDANGDLKDLLKEKEITEDDQRRGEDQVQKITDKHVAEVDSLLEQKE 179 Query: 181 KEIMHF 186 K++M Sbjct: 180 KDLMEI 185 >gi|148255867|ref|YP_001240452.1| ribosome recycling factor [Bradyrhizobium sp. BTAi1] gi|190360235|sp|A5EK52|RRF_BRASB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|146408040|gb|ABQ36546.1| ribosome recycling factor [Bradyrhizobium sp. BTAi1] Length = 187 Score = 246 bits (630), Expect = 8e-64, Method: Composition-based stats. Identities = 96/182 (52%), Positives = 127/182 (69%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 DL +K RM LK ++ LRTGR S SM++ V+VEAYGSH+PLNQ+A V+V EPR Sbjct: 6 FDLNELKRRMQGATQALKHELGGLRTGRASASMVEPVQVEAYGSHMPLNQLATVSVPEPR 65 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 +L V VWD+ MV +VE+ I +SNLGL+P EGQV+R+ +PE +ERR LVKVAH YAE Sbjct: 66 LLSVQVWDRTMVKAVEKAIVDSNLGLSPATEGQVIRLRIPELNQERRKELVKVAHKYAEA 125 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++++VR++RRDG+D +KK K+ + SED L DIQK TDS I ID K+KEI+ Sbjct: 126 ARVAVRHVRRDGLDTVKKLEKNHEISEDDQERLATDIQKATDSVISEIDQLLAAKEKEIL 185 Query: 185 HF 186 Sbjct: 186 TV 187 >gi|306844023|ref|ZP_07476618.1| ribosome recycling factor [Brucella sp. BO1] gi|306275778|gb|EFM57502.1| ribosome recycling factor [Brucella sp. BO1] Length = 186 Score = 246 bits (630), Expect = 9e-64, Method: Composition-based stats. Identities = 94/186 (50%), Positives = 126/186 (67%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ D+ ++K RM ++ LK D+ LRTGR S S+L+ + +EAYGS +P+NQ+AN++V Sbjct: 1 MSDAFDINDLKRRMEGAVNALKHDLGGLRTGRASASLLEPITIEAYGSTMPINQIANISV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E RML VSVWDK MV +VER I +S LGLNPI +G LRIP+PE E+RR LVK+AH Sbjct: 61 PESRMLSVSVWDKSMVGAVERAIRDSGLGLNPITDGMTLRIPLPELNEQRRKELVKIAHQ 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE+ +I+ R++RRDGMD LKK K S+D L +QK+TD TI +D K+ Sbjct: 121 YAEQGRIAARHVRRDGMDQLKKLEKDSVISQDESRVLSEKVQKLTDDTIAEMDKIVAVKE 180 Query: 181 KEIMHF 186 EIM Sbjct: 181 GEIMQV 186 >gi|242278734|ref|YP_002990863.1| ribosome recycling factor [Desulfovibrio salexigens DSM 2638] gi|242121628|gb|ACS79324.1| ribosome recycling factor [Desulfovibrio salexigens DSM 2638] Length = 185 Score = 246 bits (630), Expect = 9e-64, Method: Composition-based stats. Identities = 79/186 (42%), Positives = 119/186 (63%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N+V L + K RM ++ L+ D LRTGR + S++D + V+ YG+ P+NQ+A+V++ Sbjct: 2 INEV--LADGKKRMEGALTALENDFAKLRTGRAATSLVDNISVDYYGTPTPINQLASVSI 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R + + WDK +++ + +S+LGLNP+ +G+VLRI +P TEERR LVK+A Sbjct: 60 PDSRTISIQPWDKGAFPLIDKALQQSDLGLNPVNDGKVLRIAIPPLTEERRKELVKIAKK 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 Y E SKI++RN+RRD D LKK K SED ++D+QKITD +K D EK+ Sbjct: 120 YTEDSKIAIRNVRRDMNDTLKKLEKDKDISEDEQRKAQDDVQKITDGYVKKCDVACGEKE 179 Query: 181 KEIMHF 186 KEI+ Sbjct: 180 KEILEI 185 >gi|157147397|ref|YP_001454716.1| hypothetical protein CKO_03195 [Citrobacter koseri ATCC BAA-895] gi|157084602|gb|ABV14280.1| hypothetical protein CKO_03195 [Citrobacter koseri ATCC BAA-895] Length = 173 Score = 246 bits (630), Expect = 9e-64, Method: Composition-based stats. Identities = 73/173 (42%), Positives = 111/173 (64%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M + K + +RTGR SPS+LD + VE YG+ PL Q+A+VTV + R L ++V+D+ Sbjct: 1 MEKCVEAFKNQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDR 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 M +VE+ I S+LGLNP G +R+P+P TEERR L K+ AE+++++VRN+R Sbjct: 61 SMSPAVEKAIMASDLGLNPSSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RD D +K K + SED ++++QK+TD+ IK +D+ EK+ E+M F Sbjct: 121 RDANDKVKALLKDKEISEDDDRRSQDEVQKLTDAAIKKVDAALTEKEAELMQF 173 >gi|262404591|ref|ZP_06081146.1| ribosome recycling factor [Vibrio sp. RC586] gi|262349623|gb|EEY98761.1| ribosome recycling factor [Vibrio sp. RC586] Length = 185 Score = 246 bits (630), Expect = 9e-64, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK + +RTGR PS+L + V+ YG+ PLNQVANV + R L Sbjct: 7 KDAQERMEKSVEALKNGLSKIRTGRAHPSLLTGISVDYYGAPTPLNQVANVIAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+++ VE+ I S+LGLNP+ G ++R+P+P TEERR LVK+ AE ++ Sbjct: 67 ITVFDRDLTQKVEKAILMSDLGLNPMSAGTIIRVPLPPLTEERRRDLVKIVRGEAEGGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD + LK K + SED + DIQK+TD+ +K ID K+KE+M Sbjct: 127 AVRNIRRDANNDLKGLLKDKEISEDDERRAQEDIQKLTDAAVKKIDDVLAAKEKELMEV 185 >gi|300715399|ref|YP_003740202.1| ribosome recycling factor [Erwinia billingiae Eb661] gi|299061235|emb|CAX58344.1| Ribosome recycling factor [Erwinia billingiae Eb661] Length = 185 Score = 246 bits (630), Expect = 9e-64, Method: Composition-based stats. Identities = 79/179 (44%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM + K + +RTGR SPS+LD + V+ YGS PL Q+A+VTV + R L Sbjct: 7 KDAETRMEKCVEAFKNHISKIRTGRASPSILDGIMVDYYGSSTPLRQLASVTVEDSRTLK 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ + A+VE+ I S+LGLNP G +R+P+P TEERR L+KV AE+ ++ Sbjct: 67 INVFDRSISAAVEKAIMTSDLGLNPSSAGSDIRVPLPALTEERRKDLIKVVRGEAEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRN+RRD D +K K + SED ++DIQK+TD IK ID+ EK+ E+M F Sbjct: 127 SVRNVRRDANDKVKALLKDKEISEDDEHRSQDDIQKMTDVFIKKIDTALAEKEAELMDF 185 >gi|315648104|ref|ZP_07901205.1| ribosome recycling factor [Paenibacillus vortex V453] gi|315276750|gb|EFU40093.1| ribosome recycling factor [Paenibacillus vortex V453] Length = 184 Score = 246 bits (630), Expect = 9e-64, Method: Composition-based stats. Identities = 77/179 (43%), Positives = 114/179 (63%), Gaps = 1/179 (0%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N ++RM I LK+D+ TLR GR +P++LD + VE YG+ PLNQ+AN++ + R L+ Sbjct: 7 KNAEERMEKAILSLKRDLATLRAGRAAPALLDRITVEYYGAPTPLNQLANISTPDSRTLM 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + WDK +A +E+ I +S++GL P +G +R+ VP TEERR LVK+ + E++K+ Sbjct: 67 IQPWDKSSLADIEKAIMKSDIGLTPANDGNQIRLVVPALTEERRTELVKMTKKFGEEAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD D +KK K+ SED + DIQK TD I +D K+KEIM Sbjct: 127 AIRNIRRDANDDIKKLEKT-DISEDESRRHQEDIQKATDKFIAEVDKVLVAKEKEIMEV 184 >gi|15888703|ref|NP_354384.1| ribosome recycling factor [Agrobacterium tumefaciens str. C58] gi|22001938|sp|Q8UFM0|RRF_AGRT5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|15156443|gb|AAK87169.1| ribosome recycling factor [Agrobacterium tumefaciens str. C58] Length = 185 Score = 246 bits (629), Expect = 9e-64, Method: Composition-based stats. Identities = 106/182 (58%), Positives = 134/182 (73%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 IDL +IK RM I+ K D+ +LRTGR S ++LD V ++AYGS VPLNQVAN+TV EPR Sbjct: 4 IDLNDIKRRMDGAINAFKSDIASLRTGRASANILDPVTIDAYGSRVPLNQVANITVPEPR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 ML V++WDK MV +V+R I ESNLGLNPIV+GQ LRIP+PE EERR +LVKVAH Y+EK Sbjct: 64 MLGVNIWDKSMVNAVDRAIRESNLGLNPIVDGQNLRIPLPELNEERRKSLVKVAHEYSEK 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +K+++R++RRDGMD LKK+ K G +D +QK+TD TI ID EK+KEIM Sbjct: 124 AKVAIRHVRRDGMDGLKKAEKDGDIGQDESRGQSEKVQKMTDDTISEIDRLLAEKEKEIM 183 Query: 185 HF 186 Sbjct: 184 QV 185 >gi|86606512|ref|YP_475275.1| ribosome recycling factor [Synechococcus sp. JA-3-3Ab] gi|86555054|gb|ABD00012.1| ribosome recycling factor [Synechococcus sp. JA-3-3Ab] Length = 182 Score = 246 bits (629), Expect = 9e-64, Method: Composition-based stats. Identities = 73/179 (40%), Positives = 114/179 (63%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 ++L I++ M + ++ T+RTGR + S+LD V+VE YG PL +A++T + Sbjct: 1 MELAEIEELMSKAVQATQRSFNTVRTGRANASLLDRVQVEYYGVPTPLKALASITTPDAS 60 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 L++ +D +A++ER I S+LGL P +G+V+R+ +P TEERR L K AE+ Sbjct: 61 TLLIQPFDPSTLAAIERAIVASDLGLTPSNDGKVVRLNIPPLTEERRKELSKQVAKLAEE 120 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 ++S+RNIRRD +D ++K K+G+ SED SL+ +IQK+TD IK ID EK+KE+ Sbjct: 121 GRVSIRNIRRDAIDSVRKREKNGEISEDESKSLQEEIQKLTDRYIKKIDDLLAEKEKEL 179 >gi|283783956|ref|YP_003363821.1| ribosome recycling factor [Citrobacter rodentium ICC168] gi|282947410|emb|CBG86955.1| ribosome recycling factor [Citrobacter rodentium ICC168] Length = 185 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 116/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM + K + +RTGR SPS+LD + VE YG+ PL Q+A+VTV + R L Sbjct: 7 KDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLPQLASVTVEDSRTLK 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ + A+VE+ I S+LGLNP G +R+P+P TEERR L K+ AE++++ Sbjct: 67 INVFDRSLSAAVEKAIMASDLGLNPSSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD D +K K + SED ++DIQK+TD+ IK +++ +K+ E+M F Sbjct: 127 AVRNVRRDANDKVKALLKEKEISEDDDRRSQDDIQKLTDAAIKKVEAALADKEAELMQF 185 >gi|240850307|ref|YP_002971700.1| ribosome recycling factor [Bartonella grahamii as4aup] gi|240267430|gb|ACS51018.1| ribosome recycling factor [Bartonella grahamii as4aup] Length = 186 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 98/186 (52%), Positives = 130/186 (69%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 MN + ++K RM I+ K ++ LRTGR S S+L+ + VE+YGS V +NQVAN++V Sbjct: 1 MNVTSIMDDLKRRMDGAITAFKHELGGLRTGRASASLLEPLTVESYGSVVHINQVANISV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPRML VSVWDK MV +VER I +S LGLNPI +G LRIP+PE EERR LVK+AH Sbjct: 61 PEPRMLSVSVWDKTMVGAVERAIRDSGLGLNPITDGTNLRIPLPELNEERRKELVKIAHH 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE+++++ R++RRDGMD+LKK K G+ +D SL +QK+TD TI +ID K+ Sbjct: 121 YAEQARVATRHVRRDGMDNLKKLEKDGEIGQDEAHSLSEKVQKLTDETIADIDKILAVKE 180 Query: 181 KEIMHF 186 EIMH Sbjct: 181 SEIMHV 186 >gi|261253725|ref|ZP_05946298.1| ribosome recycling factor [Vibrio orientalis CIP 102891] gi|260937116|gb|EEX93105.1| ribosome recycling factor [Vibrio orientalis CIP 102891] Length = 185 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ ++RM ++ LK ++ +RTGR PS+L + VE YG+ PLNQVANV + R L Sbjct: 7 QDAQERMEKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAPTPLNQVANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DKE+ VE+ I S+LGLNP+ G ++R+P+P TEERR LVK+ AE ++ Sbjct: 67 ITVFDKELTQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD LK K + SED +++IQK+TD+ +K +D K+KE+M Sbjct: 127 AIRNIRRDANGELKALLKDKEISEDEDRKGQDEIQKLTDAAVKQVDEVLAAKEKELMEV 185 >gi|329296134|ref|ZP_08253470.1| ribosome recycling factor [Plautia stali symbiont] Length = 185 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 78/179 (43%), Positives = 116/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM + K + +RTGR SPS+LD + VE YG+ PL Q+A+VTV + R L Sbjct: 7 KDAETRMDKCVEAFKNTISKVRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLK 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ M +VE+ I S+LGLNP G +R+P+P TEERR L+KV AE+ ++ Sbjct: 67 INVFDRSMGPAVEKAIIASDLGLNPSSAGSDIRVPLPALTEERRKDLIKVVRGEAEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRN+RRD D +K K + SED +++IQK+TD IK++D+ EK+KE+M F Sbjct: 127 SVRNVRRDANDKIKALLKDKEISEDDERRSQDEIQKMTDVRIKHVDAALAEKEKELMEF 185 >gi|83311594|ref|YP_421858.1| ribosome recycling factor [Magnetospirillum magneticum AMB-1] gi|123541757|sp|Q2W4C6|RRF_MAGMM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|82946435|dbj|BAE51299.1| Ribosome recycling factor [Magnetospirillum magneticum AMB-1] Length = 190 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 93/179 (51%), Positives = 118/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++I RM + LKK+ LR+GR S ++LD V VEAYG +PL+Q V V EPRML Sbjct: 12 KDITRRMDSAVEVLKKEFSGLRSGRASINLLDPVVVEAYGQTMPLSQCGTVGVPEPRMLT 71 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V VWDK V +VE+ I + LGLNP +GQ++R+P+P EERR L KVA Y+E+++I Sbjct: 72 VQVWDKSQVKAVEKAIANAGLGLNPQADGQMIRVPIPPLNEERRKELQKVAGKYSEQARI 131 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRN+RRDGMD LKK K G SED + E +IQ ITD TIK ID K+KEIM Sbjct: 132 SVRNVRRDGMDTLKKMEKDGHISEDEIKKHEKEIQAITDETIKKIDEALGHKEKEIMQV 190 >gi|269960594|ref|ZP_06174966.1| Ribosome-recycling factor [Vibrio harveyi 1DA3] gi|269834671|gb|EEZ88758.1| Ribosome-recycling factor [Vibrio harveyi 1DA3] Length = 185 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 77/179 (43%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK ++ +RTGR PS+L + VE YG+ PLNQVANV + R L Sbjct: 7 KDAQERMDKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAPTPLNQVANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DKE+ VE+ I S+LGLNP+ G ++R+P+P TEERR LVK+ AE +++ Sbjct: 67 ITVFDKELTQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD LK K + SED +++IQK+TD +K ID K+KE+M Sbjct: 127 AVRNIRRDANSDLKGLLKDKEISEDEDRKAQDEIQKLTDVAVKKIDEVLAAKEKELMEV 185 >gi|304396647|ref|ZP_07378528.1| ribosome recycling factor [Pantoea sp. aB] gi|304356156|gb|EFM20522.1| ribosome recycling factor [Pantoea sp. aB] Length = 185 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ RM + K + +RTGR SPS+LD + VE YG+ PL Q+A+VTV + R L Sbjct: 7 KDADTRMEKCVEAFKTTISKVRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLK 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ + +VE+ I +S+LGLNP G +R+P+P TEERR L+K+ AE+ ++ Sbjct: 67 INVFDRSLSPAVEKAIMKSDLGLNPSSAGTDIRVPLPALTEERRKDLIKIVRGEAEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRN+RRD D +K K + SED ++++QK+TD+ IK +D+ EK+ E+M F Sbjct: 127 SVRNVRRDANDKIKALLKDKEISEDDERRAQDEVQKMTDAYIKKVDAALSEKESELMDF 185 >gi|303228555|ref|ZP_07315383.1| ribosome recycling factor [Veillonella atypica ACS-134-V-Col7a] gi|303232131|ref|ZP_07318834.1| ribosome recycling factor [Veillonella atypica ACS-049-V-Sch6] gi|302513237|gb|EFL55276.1| ribosome recycling factor [Veillonella atypica ACS-049-V-Sch6] gi|302516802|gb|EFL58716.1| ribosome recycling factor [Veillonella atypica ACS-134-V-Col7a] Length = 186 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 81/180 (45%), Positives = 121/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q ++RM +I LK + ++RTGR S ++LD V V+ YGS P+NQVAN++V EPRM+ Sbjct: 7 MQQQEERMNKSIESLKHEFASIRTGRASTALLDKVMVDYYGSPTPINQVANISVPEPRMI 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ WDK M+ ++E+ I +S+LGLNP +G +R+ +P+ TEERR +VKV H AE +K Sbjct: 67 LIAPWDKSMIGAIEKAILQSDLGLNPGNDGTAIRLTIPQLTEERRKEIVKVVHKKAEDAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD D LKK K+ +ED + IQK+TD IK ID K+K+++ Sbjct: 127 VAVRNIRRDANDALKKEEKAKTITEDDAKDGLDQIQKLTDKKIKQIDELKAVKEKDVLEV 186 >gi|153831282|ref|ZP_01983949.1| ribosome recycling factor [Vibrio cholerae 623-39] gi|148873240|gb|EDL71375.1| ribosome recycling factor [Vibrio cholerae 623-39] Length = 185 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 112/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK + +RTGR PS+L + V+ YG+ PLNQVANV + R L Sbjct: 7 KDAQERMEKSVEALKNGLSKIRTGRAHPSLLTGISVDYYGAPTPLNQVANVIAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ + VE+ I S+LGLNP+ G ++R+P+P TEERR LVK+ AE ++ Sbjct: 67 ITVFDRXLTQKVEKAILMSDLGLNPMSAGTIIRVPLPPLTEERRRDLVKIVRGEAEGGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD + LK K + SED + +IQK+TD+ +K ID K+KE+M Sbjct: 127 AVRNIRRDANNDLKALLKDKEISEDDERRAQEEIQKLTDAAVKKIDDVLAAKEKELMEV 185 >gi|22127009|ref|NP_670432.1| ribosome recycling factor [Yersinia pestis KIM 10] gi|45442572|ref|NP_994111.1| ribosome recycling factor [Yersinia pestis biovar Microtus str. 91001] gi|51597315|ref|YP_071506.1| ribosome recycling factor [Yersinia pseudotuberculosis IP 32953] gi|108806520|ref|YP_650436.1| ribosome recycling factor [Yersinia pestis Antiqua] gi|108813113|ref|YP_648880.1| ribosome recycling factor [Yersinia pestis Nepal516] gi|145598947|ref|YP_001163023.1| ribosome recycling factor [Yersinia pestis Pestoides F] gi|149366952|ref|ZP_01888985.1| ribosome recycling factor [Yersinia pestis CA88-4125] gi|153949227|ref|YP_001400000.1| ribosome recycling factor [Yersinia pseudotuberculosis IP 31758] gi|162420181|ref|YP_001607769.1| ribosome recycling factor [Yersinia pestis Angola] gi|165927071|ref|ZP_02222903.1| ribosome recycling factor [Yersinia pestis biovar Orientalis str. F1991016] gi|165939820|ref|ZP_02228360.1| ribosome recycling factor [Yersinia pestis biovar Orientalis str. IP275] gi|166011931|ref|ZP_02232829.1| ribosome recycling factor [Yersinia pestis biovar Antiqua str. E1979001] gi|166211643|ref|ZP_02237678.1| ribosome recycling factor [Yersinia pestis biovar Antiqua str. B42003004] gi|167399872|ref|ZP_02305390.1| ribosome recycling factor [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419665|ref|ZP_02311418.1| ribosome recycling factor [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425236|ref|ZP_02316989.1| ribosome recycling factor [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470429|ref|ZP_02335133.1| ribosome recycling factor [Yersinia pestis FV-1] gi|170023318|ref|YP_001719823.1| ribosome recycling factor [Yersinia pseudotuberculosis YPIII] gi|186896420|ref|YP_001873532.1| ribosome recycling factor [Yersinia pseudotuberculosis PB1/+] gi|218928215|ref|YP_002346090.1| ribosome recycling factor [Yersinia pestis CO92] gi|229837754|ref|ZP_04457914.1| ribosome recycling factor [Yersinia pestis Pestoides A] gi|229840976|ref|ZP_04461135.1| ribosome recycling factor [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843077|ref|ZP_04463227.1| ribosome recycling factor [Yersinia pestis biovar Orientalis str. India 195] gi|229903556|ref|ZP_04518669.1| ribosome recycling factor [Yersinia pestis Nepal516] gi|270487337|ref|ZP_06204411.1| ribosome recycling factor [Yersinia pestis KIM D27] gi|294503064|ref|YP_003567126.1| ribosome releasing factor [Yersinia pestis Z176003] gi|22001943|sp|Q8ZH63|RRF_YERPE RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|60390683|sp|Q667J2|RRF_YERPS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|123073218|sp|Q1CFF0|RRF_YERPN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|123372696|sp|Q1CAN1|RRF_YERPA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166231530|sp|A4TL88|RRF_YERPP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166991561|sp|A7FFH2|RRF_YERP3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238687287|sp|A9R393|RRF_YERPG RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238688487|sp|B1JQG3|RRF_YERPY RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238691338|sp|B2JZ31|RRF_YERPB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|21960056|gb|AAM86683.1|AE013914_3 ribosome releasing factor [Yersinia pestis KIM 10] gi|45437437|gb|AAS62988.1| ribosome recycling factor [Yersinia pestis biovar Microtus str. 91001] gi|51590597|emb|CAH22238.1| ribosome recycling factor [Yersinia pseudotuberculosis IP 32953] gi|108776761|gb|ABG19280.1| ribosome recycling factor [Yersinia pestis Nepal516] gi|108778433|gb|ABG12491.1| ribosome recycling factor [Yersinia pestis Antiqua] gi|115346826|emb|CAL19712.1| ribosome recycling factor [Yersinia pestis CO92] gi|145210643|gb|ABP40050.1| ribosome recycling factor [Yersinia pestis Pestoides F] gi|149290566|gb|EDM40642.1| ribosome recycling factor [Yersinia pestis CA88-4125] gi|152960722|gb|ABS48183.1| ribosome recycling factor [Yersinia pseudotuberculosis IP 31758] gi|162352996|gb|ABX86944.1| ribosome recycling factor [Yersinia pestis Angola] gi|165912223|gb|EDR30860.1| ribosome recycling factor [Yersinia pestis biovar Orientalis str. IP275] gi|165920967|gb|EDR38191.1| ribosome recycling factor [Yersinia pestis biovar Orientalis str. F1991016] gi|165989197|gb|EDR41498.1| ribosome recycling factor [Yersinia pestis biovar Antiqua str. E1979001] gi|166207414|gb|EDR51894.1| ribosome recycling factor [Yersinia pestis biovar Antiqua str. B42003004] gi|166962406|gb|EDR58427.1| ribosome recycling factor [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050580|gb|EDR61988.1| ribosome recycling factor [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055636|gb|EDR65420.1| ribosome recycling factor [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749852|gb|ACA67370.1| ribosome recycling factor [Yersinia pseudotuberculosis YPIII] gi|186699446|gb|ACC90075.1| ribosome recycling factor [Yersinia pseudotuberculosis PB1/+] gi|229679326|gb|EEO75429.1| ribosome recycling factor [Yersinia pestis Nepal516] gi|229689953|gb|EEO82012.1| ribosome recycling factor [Yersinia pestis biovar Orientalis str. India 195] gi|229697342|gb|EEO87389.1| ribosome recycling factor [Yersinia pestis biovar Orientalis str. PEXU2] gi|229704131|gb|EEO91143.1| ribosome recycling factor [Yersinia pestis Pestoides A] gi|262361101|gb|ACY57822.1| ribosome releasing factor [Yersinia pestis D106004] gi|262365342|gb|ACY61899.1| ribosome releasing factor [Yersinia pestis D182038] gi|270335841|gb|EFA46618.1| ribosome recycling factor [Yersinia pestis KIM D27] gi|294353523|gb|ADE63864.1| ribosome releasing factor [Yersinia pestis Z176003] gi|320014181|gb|ADV97752.1| ribosome recycling factor [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 185 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 117/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM + + + +RTGR SPS+LD ++VE YG+ PL Q+AN+ V + R L Sbjct: 7 KDAEVRMEKCLEAFQNHISKIRTGRASPSILDGIQVEYYGTATPLRQLANIVVEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ + A+VE+ I S+LGLNP G V+R+P+P TEERR L+KV A AE+ ++ Sbjct: 67 LTVFDRSLSAAVEKAIMTSDLGLNPSSAGTVIRVPLPALTEERRKDLIKVVRAEAEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RN+RRD D +K K + SED ++D+QK+TD+ IK +D+ K+ E+M F Sbjct: 127 SIRNVRRDANDKVKALLKDKEISEDEDRRSQDDVQKLTDAYIKKVDAALAVKEAELMDF 185 >gi|86610317|ref|YP_479079.1| ribosome recycling factor [Synechococcus sp. JA-2-3B'a(2-13)] gi|123500677|sp|Q2JHW2|RRF_SYNJB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|86558859|gb|ABD03816.1| ribosome recycling factor [Synechococcus sp. JA-2-3B'a(2-13)] Length = 182 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 116/179 (64%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 ++L I++ M + ++ T+RTGR + S+LD ++VE YG PL +A++T + Sbjct: 1 MELAEIEELMNKAVQATQRSFNTVRTGRANSSLLDRIQVEYYGVPTPLKALASLTTPDSS 60 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 L++ +D +A++ER I S+LGL P +G+V+R+ +P TEERR L K AE+ Sbjct: 61 TLLIQPFDPSTLAAIERAIVASDLGLTPSNDGKVVRLTIPPLTEERRKELSKQVAKLAEE 120 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 ++S+RNIRRDG+D ++K K+G+ SED SL++DIQK+TD IK ID EK+KE+ Sbjct: 121 GRVSIRNIRRDGIDSVRKREKNGELSEDESKSLQDDIQKLTDRYIKKIDELLAEKEKEL 179 >gi|330830752|ref|YP_004393704.1| ribosome-recycling factor [Aeromonas veronii B565] gi|328805888|gb|AEB51087.1| Ribosome-recycling factor [Aeromonas veronii B565] Length = 185 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 82/179 (45%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + KDRMG ++ LK M +RTGR PS+LD ++VE YG+ PL Q+ANV + R L Sbjct: 7 NDAKDRMGKSVEALKTQMSKIRTGRAHPSLLDGIQVEYYGAATPLKQLANVVAEDARTLS 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S++D+ M+ +VE+ I S+LGLNP GQ LR+P+P TEERR L K+ A AE +++ Sbjct: 67 ISIFDRSMIQAVEKAILTSDLGLNPSSNGQTLRVPLPPLTEERRRDLTKIVRAEAENARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD LK K + SED + +IQK+TDS IK +D K+KE+M Sbjct: 127 AVRNIRRDANADLKALLKDKEISEDDDRRAQEEIQKLTDSYIKLVDEALAVKEKELMEI 185 >gi|145300058|ref|YP_001142899.1| ribosome recycling factor [Aeromonas salmonicida subsp. salmonicida A449] gi|166230408|sp|A4SQH9|RRF_AERS4 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|142852830|gb|ABO91151.1| ribosome recycling factor [Aeromonas salmonicida subsp. salmonicida A449] Length = 185 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 81/179 (45%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + KDRM ++ LK M +RTGR PS+LD ++VE YG+ PL Q+ANV + R L Sbjct: 7 NDAKDRMAKSVESLKTQMSKIRTGRAHPSLLDGIQVEYYGAATPLKQLANVVAEDARTLS 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S++D+ M+ +VE+ I S+LGLNP GQ LR+P+P TEERR L K+ A AE +++ Sbjct: 67 ISIFDRSMIQAVEKAILTSDLGLNPSSNGQTLRVPLPPLTEERRRDLTKIVRAEAEGARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD LK K + SED + +IQK+TDS IK +D K+KE+M Sbjct: 127 AVRNIRRDANADLKALLKDKEISEDDDRRAQEEIQKLTDSFIKLVDDALAAKEKELMEI 185 >gi|186476093|ref|YP_001857563.1| ribosome recycling factor [Burkholderia phymatum STM815] gi|238691306|sp|B2JIC3|RRF_BURP8 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|184192552|gb|ACC70517.1| ribosome recycling factor [Burkholderia phymatum STM815] Length = 186 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + + +M ++ K D+ +RTGR +LD ++V+ YGS VP++QVAN+T+++ R + Sbjct: 8 KGAEQKMQRSLDAFKNDLSKIRTGRAHTGLLDHIQVDYYGSPVPISQVANLTLVDARTIG 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K+MVA VE+ I ES+LGLNP G V+R+P+P TEERR L KV + E +K+ Sbjct: 68 VQPWEKKMVAVVEKAIRESDLGLNPASHGDVIRVPMPPLTEERRKELTKVVKSEGETAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD + LKK K + SED +D+QK+TD + ID + K+ EIM Sbjct: 128 AVRNLRRDANEQLKKLVKDKEISEDDERRAGDDVQKLTDKFVAEIDKLVQTKEGEIMTV 186 >gi|296446143|ref|ZP_06888091.1| ribosome recycling factor [Methylosinus trichosporium OB3b] gi|296256337|gb|EFH03416.1| ribosome recycling factor [Methylosinus trichosporium OB3b] Length = 186 Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats. Identities = 92/186 (49%), Positives = 129/186 (69%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+Q DL +K RM ++ LK ++ LRTGR S +L+ + VEAYG PLNQVA ++V Sbjct: 1 MSQTFDLPELKRRMQGAMATLKHELGGLRTGRASAGLLEPIHVEAYGQSTPLNQVATISV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPR+L V VWDK +V++V++ I +SNLGL P +EGQVLRI PE E+RR LVKVAH Sbjct: 61 PEPRLLSVQVWDKGLVSAVDKAIRDSNLGLMPTIEGQVLRIRTPELNEQRRKELVKVAHK 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE++++SVR++RRDG+D LKK +K ED E ++QK TD +++ID+ +K+ Sbjct: 121 YAEEARVSVRHVRRDGIDILKKLQKDHALPEDDAKRHETEVQKATDEAVRDIDAALAQKE 180 Query: 181 KEIMHF 186 KEI+ Sbjct: 181 KEILQV 186 >gi|194015089|ref|ZP_03053706.1| ribosome recycling factor [Bacillus pumilus ATCC 7061] gi|194014115|gb|EDW23680.1| ribosome recycling factor [Bacillus pumilus ATCC 7061] Length = 185 Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats. Identities = 77/180 (42%), Positives = 120/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K++M + +++ T+R GR + S+LD V V+ YG+ PLNQ+A++TV E RML Sbjct: 6 LNQTKEKMEKAVQAYGRELATVRAGRANASLLDKVTVDYYGAQTPLNQIASITVPEARML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK + +E+ I +S+LG+ P +G V+RI +P TEERR LVKV Y+E++K Sbjct: 66 IITPYDKTAIGDIEKSIQKSDLGITPTSDGNVIRIAIPALTEERRKELVKVVRKYSEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RRD D LKK K+G+ +ED + S D+QK+TD + ID ++K+KEIM Sbjct: 126 VAVRNVRRDANDELKKLEKNGEITEDELRSSTEDVQKLTDEYVAKIDDVTKDKEKEIMEV 185 >gi|254294076|ref|YP_003060099.1| ribosome recycling factor [Hirschia baltica ATCC 49814] gi|254042607|gb|ACT59402.1| ribosome recycling factor [Hirschia baltica ATCC 49814] Length = 184 Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats. Identities = 89/182 (48%), Positives = 132/182 (72%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 ID+++++ RM ++ LK + LRTGR S ++LD V V+AYG+ PL QVA+++V EPR Sbjct: 3 IDMKDLERRMEGAVASLKTEFSGLRTGRASVNLLDTVMVQAYGASTPLAQVASISVPEPR 62 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 ML V+VWDK +V + ++ I E+ LGLNP+++GQ LRIP+P EERR L K+A YAE Sbjct: 63 MLAVNVWDKTVVGAADKAIREAGLGLNPVMDGQNLRIPIPPLNEERRAELAKLAGKYAES 122 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++++RN+RRDGMD LKK K G+ S+D SLE+D+QK+TD I ++D+ + K++EIM Sbjct: 123 ARVAIRNVRRDGMDILKKMEKDGEISKDEQKSLEDDVQKLTDKIISSVDASVKSKEEEIM 182 Query: 185 HF 186 Sbjct: 183 QV 184 >gi|163868104|ref|YP_001609308.1| ribosome recycling factor [Bartonella tribocorum CIP 105476] gi|189044045|sp|A9ISK9|RRF_BART1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|161017755|emb|CAK01313.1| Ribosome recycling factor [Bartonella tribocorum CIP 105476] Length = 186 Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats. Identities = 98/186 (52%), Positives = 129/186 (69%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 MN + ++K RM I K ++ LRTGR S S+L+ + VE+YGS V +NQVAN++V Sbjct: 1 MNVASIMDDLKRRMDGAIVAFKHELGGLRTGRASASLLEPLTVESYGSVVHINQVANISV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPRML VSVWDK MV +VER I +S LGLNPI +G LRIP+PE EERR LVK+AH Sbjct: 61 PEPRMLFVSVWDKTMVGAVERAIRDSGLGLNPITDGTNLRIPLPELNEERRKELVKIAHH 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE+++++ R++RRDGMD+LKK K G+ +D SL +QK+TD TI +ID K+ Sbjct: 121 YAEQARVATRHVRRDGMDNLKKLEKDGEIGQDEAHSLSEKVQKLTDETIADIDKILAVKE 180 Query: 181 KEIMHF 186 EIMH Sbjct: 181 SEIMHV 186 >gi|311030097|ref|ZP_07708187.1| ribosome recycling factor [Bacillus sp. m3-13] Length = 185 Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats. Identities = 78/180 (43%), Positives = 118/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + KDRM + +++ T+R GR S ++LD V V+ YG+ P+NQ+A++ V E R+L Sbjct: 6 ITQTKDRMEKAVQAYSRELATIRAGRASAALLDKVTVDYYGAPTPVNQLASLNVPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV +DK + +E+ I +++LGLNP +G V+RI +P TEERR LVK +E++K Sbjct: 66 VVQPYDKTSLGDIEKAIIKADLGLNPSNDGTVIRISIPALTEERRKELVKQIKKISEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 + +RNIRRDG D LKK K+G+ +ED + +DIQK TD+ I +D+ +EK+KEIM Sbjct: 126 VGIRNIRRDGNDDLKKLEKNGEITEDELRGYTDDIQKQTDAFIAKVDTVTKEKEKEIMEV 185 >gi|300724792|ref|YP_003714117.1| ribosome releasing factor [Xenorhabdus nematophila ATCC 19061] gi|297631334|emb|CBJ92029.1| ribosome releasing factor [Xenorhabdus nematophila ATCC 19061] Length = 185 Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats. Identities = 80/179 (44%), Positives = 116/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ +DRM ++ LK + +RTGR SPS+LD + VE YGS PL Q+ANV + R L Sbjct: 7 KDAQDRMEKSVEALKNQISKVRTGRASPSLLDGISVEYYGSATPLRQIANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ M A+VE+ I S+LGLNP G ++R+P+P TEERR L+KV AE+ ++ Sbjct: 67 ITVFDRSMTAAVEKAIMASDLGLNPASAGTIIRVPLPPLTEERRKDLIKVVRGEAEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RNIRRD D +K K + SED +++IQK+TDS IK +D K+ E+M F Sbjct: 127 SIRNIRRDANDKVKALLKEKEISEDEERRSQDEIQKLTDSFIKKVDEALANKETELMDF 185 >gi|170768435|ref|ZP_02902888.1| ribosome releasing factor [Escherichia albertii TW07627] gi|170122539|gb|EDS91470.1| ribosome releasing factor [Escherichia albertii TW07627] Length = 185 Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 116/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM + K + +RTGR SPS+LD + VE YG+ PL Q+A+VTV + R L Sbjct: 7 KDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLK 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ M A+VE+ I S+LGLNP G +R+P+P TEERR L K+ AE++++ Sbjct: 67 INVFDRSMSAAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD D +K K + SED ++D+QK+TD+ IK I++ +K+ E+M F Sbjct: 127 AVRNVRRDANDKVKALLKEKEISEDDDRRSQDDVQKLTDAAIKKIEAALADKEAELMQF 185 >gi|86749942|ref|YP_486438.1| ribosome recycling factor [Rhodopseudomonas palustris HaA2] gi|123292529|sp|Q2IW83|RRF_RHOP2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|86572970|gb|ABD07527.1| ribosome recycling factor [Rhodopseudomonas palustris HaA2] Length = 187 Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats. Identities = 93/185 (50%), Positives = 131/185 (70%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 ++ D+ ++K RM L+ ++ LRTGR + SML+ V+V+AYG+H+PLNQ+A VTV Sbjct: 3 SEKFDINDLKRRMQGASQALQHELGGLRTGRAAASMLEPVQVDAYGTHMPLNQLATVTVP 62 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 EPR+L V VWDK MV +VE+ I +SNLGL+P EGQVLR+ +PE ++RR LVKVAH Y Sbjct: 63 EPRLLSVQVWDKSMVRAVEKAIVDSNLGLSPATEGQVLRLRIPELNQDRRKELVKVAHKY 122 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 AE ++++VR++RRDG+D +KK KS + SED L+ ++QK TDS I ID K+K Sbjct: 123 AEAARVAVRHVRRDGLDTIKKLEKSHEISEDDQKRLDQEVQKATDSAISEIDQLLASKEK 182 Query: 182 EIMHF 186 EI+ Sbjct: 183 EILTV 187 >gi|77919514|ref|YP_357329.1| ribosome recycling factor [Pelobacter carbinolicus DSM 2380] gi|123573931|sp|Q3A398|RRF_PELCD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|77545597|gb|ABA89159.1| ribosome recycling factor [Pelobacter carbinolicus DSM 2380] Length = 185 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 75/180 (41%), Positives = 113/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ + M + LKKDM +RTGR S S+LD V V+ YG+ PLNQV + V EPR++ Sbjct: 6 IKKARSGMDKAVESLKKDMTKVRTGRASTSLLDDVMVDYYGTPTPLNQVGTLAVPEPRLI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + W+K+++A +ER I +++LGLNP +G ++R+ +P TEERR + KV E +K Sbjct: 66 TIQPWEKKLLADIERAIFKADLGLNPTSDGNLIRLVIPPMTEERRKEMGKVVRKMGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 + VR+ RRD D +KK K+ + SED + E +IQ +TDS + ID +K+KEIM Sbjct: 126 VGVRSARRDANDGMKKLEKNKEISEDDLKRGEKEIQDVTDSYVAKIDDLVSQKEKEIMEI 185 >gi|15642255|ref|NP_231888.1| ribosome recycling factor [Vibrio cholerae O1 biovar El Tor str. N16961] gi|147673161|ref|YP_001217772.1| ribosome recycling factor [Vibrio cholerae O395] gi|153803002|ref|ZP_01957588.1| ribosome recycling factor [Vibrio cholerae MZO-3] gi|153827697|ref|ZP_01980364.1| ribosome recycling factor [Vibrio cholerae MZO-2] gi|227082381|ref|YP_002810932.1| ribosome recycling factor [Vibrio cholerae M66-2] gi|229507669|ref|ZP_04397174.1| ribosome recycling factor [Vibrio cholerae BX 330286] gi|229512136|ref|ZP_04401615.1| ribosome recycling factor [Vibrio cholerae B33] gi|229519271|ref|ZP_04408714.1| ribosome recycling factor [Vibrio cholerae RC9] gi|229522203|ref|ZP_04411620.1| ribosome recycling factor [Vibrio cholerae TM 11079-80] gi|229524260|ref|ZP_04413665.1| ribosome recycling factor [Vibrio cholerae bv. albensis VL426] gi|229528740|ref|ZP_04418130.1| ribosome recycling factor [Vibrio cholerae 12129(1)] gi|229607173|ref|YP_002877821.1| ribosome recycling factor [Vibrio cholerae MJ-1236] gi|254286071|ref|ZP_04961032.1| ribosome recycling factor [Vibrio cholerae AM-19226] gi|254849387|ref|ZP_05238737.1| ribosome recycling factor [Vibrio cholerae MO10] gi|255747047|ref|ZP_05420992.1| ribosome recycling factor [Vibrio cholera CIRS 101] gi|262161409|ref|ZP_06030519.1| ribosome recycling factor [Vibrio cholerae INDRE 91/1] gi|297580900|ref|ZP_06942825.1| ribosome recycling factor [Vibrio cholerae RC385] gi|298500368|ref|ZP_07010173.1| ribosome recycling factor [Vibrio cholerae MAK 757] gi|22001952|sp|Q9KPV5|RRF_VIBCH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|172047609|sp|A5F618|RRF_VIBC3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|254809542|sp|C3LQ29|RRF_VIBCM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|9656818|gb|AAF95401.1| ribosome recycling factor [Vibrio cholerae O1 biovar El Tor str. N16961] gi|124121445|gb|EAY40188.1| ribosome recycling factor [Vibrio cholerae MZO-3] gi|146315044|gb|ABQ19583.1| ribosome recycling factor [Vibrio cholerae O395] gi|149737829|gb|EDM52734.1| ribosome recycling factor [Vibrio cholerae MZO-2] gi|150423981|gb|EDN15921.1| ribosome recycling factor [Vibrio cholerae AM-19226] gi|227010269|gb|ACP06481.1| ribosome recycling factor [Vibrio cholerae M66-2] gi|227014153|gb|ACP10363.1| ribosome recycling factor [Vibrio cholerae O395] gi|229332514|gb|EEN98000.1| ribosome recycling factor [Vibrio cholerae 12129(1)] gi|229337841|gb|EEO02858.1| ribosome recycling factor [Vibrio cholerae bv. albensis VL426] gi|229341128|gb|EEO06133.1| ribosome recycling factor [Vibrio cholerae TM 11079-80] gi|229343960|gb|EEO08935.1| ribosome recycling factor [Vibrio cholerae RC9] gi|229352101|gb|EEO17042.1| ribosome recycling factor [Vibrio cholerae B33] gi|229355174|gb|EEO20095.1| ribosome recycling factor [Vibrio cholerae BX 330286] gi|229369828|gb|ACQ60251.1| ribosome recycling factor [Vibrio cholerae MJ-1236] gi|254845092|gb|EET23506.1| ribosome recycling factor [Vibrio cholerae MO10] gi|255735449|gb|EET90849.1| ribosome recycling factor [Vibrio cholera CIRS 101] gi|262028720|gb|EEY47374.1| ribosome recycling factor [Vibrio cholerae INDRE 91/1] gi|297534726|gb|EFH73562.1| ribosome recycling factor [Vibrio cholerae RC385] gi|297541061|gb|EFH77115.1| ribosome recycling factor [Vibrio cholerae MAK 757] gi|327484773|gb|AEA79180.1| Ribosome recycling factor [Vibrio cholerae LMA3894-4] Length = 185 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK + +RTGR PS+L + V+ YG+ PLNQVANV + R L Sbjct: 7 KDAQERMEKSVEALKNGLSKIRTGRAHPSLLTGISVDYYGAPTPLNQVANVIAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+E+ VE+ I S+LGLNP+ G ++R+P+P TEERR LVK+ AE ++ Sbjct: 67 ITVFDRELTQKVEKAILMSDLGLNPMSAGTIIRVPLPPLTEERRRDLVKIVRGEAEGGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD + LK K + SED + +IQK+TD+ +K ID K+KE+M Sbjct: 127 AVRNIRRDANNDLKALLKDKEISEDDERRAQEEIQKLTDAAVKKIDDVLAAKEKELMEV 185 >gi|261211375|ref|ZP_05925663.1| ribosome recycling factor [Vibrio sp. RC341] gi|260839330|gb|EEX65956.1| ribosome recycling factor [Vibrio sp. RC341] Length = 185 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK + +RTGR PS+L + V+ YG+ PLNQ+ANV + R L Sbjct: 7 KDAQERMEKSVEALKNGLSKIRTGRAHPSLLTGISVDYYGAPTPLNQIANVIAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+++ VE+ I S+LGLNP+ G ++R+P+P TEERR LVK+ AE ++ Sbjct: 67 ITVFDRDLTQKVEKAILMSDLGLNPMSAGTIIRVPLPPLTEERRRDLVKIVRGEAEGGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD + LK K + SED + DIQK+TD+ +K ID K+KE+M Sbjct: 127 AVRNIRRDANNDLKGLLKDKEISEDDERRAQEDIQKLTDAAVKKIDDVLAAKEKELMEV 185 >gi|227821900|ref|YP_002825870.1| ribosome recycling factor [Sinorhizobium fredii NGR234] gi|254809525|sp|C3MBQ5|RRF_RHISN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|227340899|gb|ACP25117.1| ribosome recycling factor [Sinorhizobium fredii NGR234] Length = 186 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 107/186 (57%), Positives = 136/186 (73%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M++ ++L+ +K RM I+ K D+ +LRTGR S ++LD V VEAYGS +PLNQVAN+ V Sbjct: 1 MSEGVELKELKRRMDGAIAAFKHDIASLRTGRASANVLDPVTVEAYGSRMPLNQVANIMV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPRML VSVWDK MV +V+R I ESNLGLNPI++GQ LRIP+PE EERR +LVKVAH Sbjct: 61 PEPRMLSVSVWDKTMVGAVDRAIRESNLGLNPIIDGQNLRIPLPELNEERRKSLVKVAHD 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAEKSK++VR++RRDGMD LKK+ K G +D + +QK+TD I ID EK+ Sbjct: 121 YAEKSKVAVRHVRRDGMDGLKKAEKDGDIGQDESRAQSERVQKMTDEVISEIDRLLAEKE 180 Query: 181 KEIMHF 186 KEIM Sbjct: 181 KEIMQV 186 >gi|157692331|ref|YP_001486793.1| ribosome recycling factor [Bacillus pumilus SAFR-032] gi|166991553|sp|A8FDB6|RRF_BACP2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|157681089|gb|ABV62233.1| peptide chain release factor RF4 [Bacillus pumilus SAFR-032] Length = 185 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 77/180 (42%), Positives = 120/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K++M + +++ T+R GR + S+LD V V+ YG+ PLNQ+A++TV E RML Sbjct: 6 LNQTKEKMEKAVQAYGRELATVRAGRANASLLDKVTVDYYGAQTPLNQIASITVPEARML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK + +E+ I +S+LG+ P +G V+RI +P TEERR LVKV Y+E++K Sbjct: 66 IITPYDKTAIGDIEKSIQKSDLGITPTSDGNVIRIAIPALTEERRKELVKVVRKYSEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RRD D LKK K+G+ +ED + S D+QK+TD + ID ++K+KEIM Sbjct: 126 VAVRNVRRDANDELKKLEKNGEITEDELRSSTEDVQKLTDEYVAKIDDVMKDKEKEIMEV 185 >gi|83592924|ref|YP_426676.1| ribosome recycling factor [Rhodospirillum rubrum ATCC 11170] gi|83575838|gb|ABC22389.1| ribosome recycling factor [Rhodospirillum rubrum ATCC 11170] Length = 191 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 84/179 (46%), Positives = 118/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +++ RM + L+KD LRTGR S S+LD V VEAYG +PL QVA V+V EPRM+ Sbjct: 13 ADLRHRMDTAVEVLRKDFAGLRTGRASTSLLDSVMVEAYGQAMPLAQVATVSVPEPRMIS 72 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V VWD+ M +V++ I ++ LGLNP +GQ++R+P+P EERR L KVA YAE++++ Sbjct: 73 VQVWDRGMAKAVDKAIRDAGLGLNPASDGQLIRVPIPPLNEERRTELTKVAGKYAEQTRV 132 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRDGMD LKK K S+D ++Q +TD TI+ +D K++EIM Sbjct: 133 AVRNVRRDGMDQLKKMEKDSAISQDEHKKFGAEVQALTDETIRRLDEALAHKEQEIMQV 191 >gi|323526485|ref|YP_004228638.1| ribosome recycling factor [Burkholderia sp. CCGE1001] gi|323383487|gb|ADX55578.1| ribosome recycling factor [Burkholderia sp. CCGE1001] Length = 186 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + + +M +I K D+ +RTGR +LD ++ + YGS VP++QVAN+T+++ R + Sbjct: 8 KGAEQKMQRSIDAFKNDLSKIRTGRAHTGLLDHIQCDYYGSPVPISQVANLTLIDARTIG 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K+MV VE+ I ES+LGLNP +G V+R+P+P TEERR L KV + AE +K+ Sbjct: 68 VQPWEKKMVQVVEKAIRESDLGLNPATQGDVIRVPMPALTEERRRELTKVVKSEAETAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD + LKK K + SED +D+QK+TD + ID K+ EIM Sbjct: 128 AVRNLRRDANEQLKKLVKDKEISEDDERRAGDDVQKLTDKFVAEIDKLVATKEAEIMTV 186 >gi|117622457|ref|YP_851370.1| ribosome recycling factor [Escherichia coli APEC O1] gi|309787154|ref|ZP_07681766.1| ribosome recycling factor [Shigella dysenteriae 1617] gi|115511581|gb|ABI99655.1| ribosome releasing factor [Escherichia coli APEC O1] gi|308924732|gb|EFP70227.1| ribosome recycling factor [Shigella dysenteriae 1617] gi|332097962|gb|EGJ02935.1| ribosome recycling factor [Shigella dysenteriae 155-74] Length = 173 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 73/173 (42%), Positives = 111/173 (64%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M + K + +RTGR SPS+LD + VE YG+ PL Q+A+VTV + R L ++V+D+ Sbjct: 1 MDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDR 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 M +VE+ I S+LGLNP G +R+P+P TEERR L K+ AE+++++VRN+R Sbjct: 61 SMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RD D +K K + SED ++D+QK+TD+ IK I++ +K+ E+M F Sbjct: 121 RDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAALADKEAELMQF 173 >gi|308048672|ref|YP_003912238.1| ribosome recycling factor [Ferrimonas balearica DSM 9799] gi|307630862|gb|ADN75164.1| ribosome recycling factor [Ferrimonas balearica DSM 9799] Length = 185 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 82/179 (45%), Positives = 112/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ KDRM ++ + M +RTGR PS+LD + V YG PL QV NVT + R L Sbjct: 7 KDAKDRMVKSVEATQTQMSKVRTGRAHPSLLDSIMVSYYGVDTPLKQVGNVTTEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+V+DK M+ +VE+ I S+LGLNP G ++RIP+P TEERR LVKV A AE ++ Sbjct: 67 VTVFDKSMIQAVEKAIMASDLGLNPNSAGTMIRIPLPPLTEERRRDLVKVVRAEAEHGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD +K K + SED E+DIQK+TD +K ID+ +K+KE+M Sbjct: 127 AVRNIRRDANSDIKALEKEKEISEDDARRGEDDIQKLTDQYVKQIDAILADKEKELMEV 185 >gi|292898542|ref|YP_003537911.1| ribosome recycling factor [Erwinia amylovora ATCC 49946] gi|291198390|emb|CBJ45497.1| ribosome recycling factor [Erwinia amylovora ATCC 49946] Length = 185 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 77/179 (43%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM + K + +RTGR SPS+LD + V+ YGS PL Q+A+VTV + R L Sbjct: 7 KDAETRMEKCVEAFKNHISKIRTGRASPSILDGIMVDYYGSPTPLRQLASVTVEDSRTLK 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ + A+VE+ I S+LGLNP G +R+P+P TEERR L+KV AE+ ++ Sbjct: 67 INVFDRSIGAAVEKAIMTSDLGLNPSSAGSDIRVPLPALTEERRKDLIKVVRGEAEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRN+RRD D LK K + SED + D+QK+TD IK +D+ +K+ E+M F Sbjct: 127 SVRNVRRDANDKLKALLKDKEISEDDDRRAQEDVQKMTDIFIKKVDASLADKETELMDF 185 >gi|90423939|ref|YP_532309.1| ribosome recycling factor [Rhodopseudomonas palustris BisB18] gi|122476317|sp|Q215E6|RRF_RHOPB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|90105953|gb|ABD87990.1| ribosome recycling factor [Rhodopseudomonas palustris BisB18] Length = 187 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 95/182 (52%), Positives = 129/182 (70%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D+ +K RM LK ++ LRTGR + SML+ V+VEAYGSH+PLNQ+A V+V EPR Sbjct: 6 FDINELKRRMQGATQSLKHELGGLRTGRAAASMLEPVQVEAYGSHMPLNQLATVSVPEPR 65 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 +L V VWD+ MV +VE+ I +SNLGL+P EGQVLR+ +PE EERR LVKVAH YAE Sbjct: 66 LLSVQVWDRSMVKAVEKAIVDSNLGLSPATEGQVLRLRIPELNEERRKELVKVAHKYAEA 125 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++++VR++RRDG+D LKK K+ + SED L +++QK TD+TI +D K+KEI+ Sbjct: 126 TRVAVRHVRRDGLDTLKKLEKNSEISEDDQERLAHEVQKATDATILEVDQLLAAKEKEIL 185 Query: 185 HF 186 Sbjct: 186 TV 187 >gi|138894772|ref|YP_001125225.1| ribosome recycling factor [Geobacillus thermodenitrificans NG80-2] gi|196247605|ref|ZP_03146307.1| ribosome recycling factor [Geobacillus sp. G11MC16] gi|166230789|sp|A4IMC6|RRF_GEOTN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|134266285|gb|ABO66480.1| Ribosome recycling factor [Geobacillus thermodenitrificans NG80-2] gi|196212389|gb|EDY07146.1| ribosome recycling factor [Geobacillus sp. G11MC16] Length = 185 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 72/180 (40%), Positives = 118/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q K++M + +++ T+R GR + +L+ V V+ YG P+NQ+A ++V E RML Sbjct: 6 IQQAKEKMDKAVQAFSRELATVRAGRANAGLLEKVTVDYYGVATPINQLATISVPEARML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +DK ++ +E+ I S+LG+ P +G V+R+ +P TEERR L K+ Y+E++K Sbjct: 66 VIQPYDKSVIKEMEKAILASDLGVTPSNDGSVIRLVIPPLTEERRRELAKLVKKYSEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD D LKK K+ + +ED + S +++QK+TDS I ID+ +EK+KE+M Sbjct: 126 VAVRNIRRDANDELKKLEKNSEITEDELRSYTDEVQKLTDSHIAKIDAITKEKEKEVMEV 185 >gi|49474293|ref|YP_032335.1| ribosome recycling factor [Bartonella quintana str. Toulouse] gi|60390253|sp|Q6FZN3|RRF_BARQU RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|49239797|emb|CAF26187.1| Ribosome recycling factor [Bartonella quintana str. Toulouse] Length = 186 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 100/186 (53%), Positives = 131/186 (70%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 MN + + ++K RM IS + ++ LRTGR S S+L+ + VEAYGS V +NQVAN++V Sbjct: 1 MNVLSIMDDLKRRMDGAISAFQHELGGLRTGRASASLLEPLTVEAYGSVVHINQVANISV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPRML VSVWDK MV +VER I +S LGLNPI +G LRIP+PE EERR LVK+AH Sbjct: 61 PEPRMLSVSVWDKTMVGAVERAIRDSGLGLNPITDGMNLRIPLPELNEERRKELVKIAHQ 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE+++++ R++RRDGMD+LKK K G+ S+D L +QK+TD TI NID K+ Sbjct: 121 YAEQARVATRHVRRDGMDNLKKLEKEGEISQDEAHGLSEKVQKLTDETIANIDKILAVKE 180 Query: 181 KEIMHF 186 EIMH Sbjct: 181 SEIMHV 186 >gi|17546126|ref|NP_519528.1| ribosome recycling factor [Ralstonia solanacearum GMI1000] gi|22001940|sp|Q8XZI8|RRF_RALSO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|17428422|emb|CAD15109.1| probable ribosome recycling factor (ribosome-releasing factor) (rrf) protein [Ralstonia solanacearum GMI1000] Length = 186 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + +M +I K D+ +RTGR +LD V+V+ YGS VP++QVAN+ + + R + Sbjct: 8 KSAEQKMQKSIDAFKADLAKVRTGRAHTGLLDHVQVDYYGSMVPISQVANLGLADARTIS 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K+MV++VER I +++LGLNP G+V+R+P+P TEERR L KV + E +K+ Sbjct: 68 VQPWEKKMVSAVERAIRDADLGLNPATMGEVIRVPMPPLTEERRKELTKVVKSEGEDAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD + KK K SED ++++QK+TD + +D EK KEIM Sbjct: 128 AVRNVRRDANEQFKKLVKDKAISEDDERRGQDEVQKLTDRFVAEVDKLVAEKDKEIMTV 186 >gi|296101340|ref|YP_003611486.1| ribosome releasing factor [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055799|gb|ADF60537.1| ribosome releasing factor [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 185 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 78/179 (43%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM + K + +RTGR SPS+LD + VE YG+ PL Q+A+VTV + R L Sbjct: 7 KDAEVRMEKCVEAFKTQISKIRTGRASPSLLDGIIVEYYGTPTPLRQLASVTVEDTRTLK 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ M +VE+ I S+LGLNP G +R+P+P TEERR L+KV AE+ ++ Sbjct: 67 INVFDRSMGPAVEKAIMASDLGLNPSSAGADIRVPLPPLTEERRKDLIKVVRGEAEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRN+RRD D +K K + SED ++DIQK+TD+ IK ID+ +K+ E+M F Sbjct: 127 SVRNVRRDANDKVKALLKEKEISEDDDRRSQDDIQKMTDAAIKKIDAALADKEAELMQF 185 >gi|291616348|ref|YP_003519090.1| Frr [Pantoea ananatis LMG 20103] gi|291151378|gb|ADD75962.1| Frr [Pantoea ananatis LMG 20103] Length = 185 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ RM + K + +RTGR SPS+LD + VE YG+ PL Q+A+VTV + R L Sbjct: 7 KDADTRMDKCVEAFKTTISKVRTGRASPSLLDGIIVEYYGTPTPLRQLASVTVEDSRTLK 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ + +VE+ I S+LGLNP G +R+P+P TEERR L+K+ AE+ ++ Sbjct: 67 INVFDRSLGPAVEKAIMASDLGLNPNSAGSDIRVPLPALTEERRKDLIKIVRGEAEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRN+RRD D +K K + SED +++IQK+TD+ IK +D+ EK+ E+M F Sbjct: 127 SVRNVRRDANDKIKALLKDKEISEDDERRSQDEIQKMTDAHIKKVDAALAEKEAELMDF 185 >gi|312883811|ref|ZP_07743530.1| ribosome recycling factor [Vibrio caribbenthicus ATCC BAA-2122] gi|309368560|gb|EFP96093.1| ribosome recycling factor [Vibrio caribbenthicus ATCC BAA-2122] Length = 185 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ ++RM ++ LK ++ +RTGR PS+L + VE YG+ PLNQVANV + R L Sbjct: 7 QDAQERMEKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAPTPLNQVANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DKE+ VE+ I S+LGLNP+ G ++R+P+P TEERR LVK+ AE ++ Sbjct: 67 ITVFDKELTQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD LK K + SED +++IQK+TD+ +K +D K+KE+M Sbjct: 127 AIRNIRRDANGDLKALLKEKEISEDEDRKGQDEIQKLTDAAVKQVDEVLAAKEKELMEV 185 >gi|326794438|ref|YP_004312258.1| ribosome-recycling factor [Marinomonas mediterranea MMB-1] gi|326545202|gb|ADZ90422.1| Ribosome-recycling factor [Marinomonas mediterranea MMB-1] Length = 185 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 71/186 (38%), Positives = 114/186 (61%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ L++ ++RM ++ ++ +RTGR PS+LD +KV YGS PL+QVAN+TV Sbjct: 2 INEI--LKDAEERMSKAVNSVEVSFNKIRTGRAHPSLLDPIKVNYYGSPTPLSQVANITV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R L +S W+ +V +E+ I +S+LGLNP G ++RIP+P TEE R K A + Sbjct: 60 EDARTLGISPWEGNLVPEIEKAIMKSDLGLNPSTTGNLIRIPMPALTEETRGNYAKQARS 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE +I++RNIRRD +LK K + SED ++ +QK+TD + ++ K+ Sbjct: 120 EAENGRIAIRNIRRDANGNLKDLTKEKEISEDEERRGQDQVQKLTDKYVAKVEERLAAKE 179 Query: 181 KEIMHF 186 K++M Sbjct: 180 KDLMAI 185 >gi|332532243|ref|ZP_08408124.1| ribosome recycling factor [Pseudoalteromonas haloplanktis ANT/505] gi|332038341|gb|EGI74786.1| ribosome recycling factor [Pseudoalteromonas haloplanktis ANT/505] Length = 185 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 71/179 (39%), Positives = 110/179 (61%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM +++ L + +RTGR P++LD + V YG+ PLNQVANVT+ + R L Sbjct: 7 KDAQARMQKSVTALGSQLSKIRTGRAHPAILDGIMVSYYGAPTPLNQVANVTIEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + V+DK + +VE+ I S+LGLNP+ G V+R+P+P TEERR L+K+ E ++ Sbjct: 67 IGVFDKSLAQAVEKAIMASDLGLNPMSAGTVIRVPLPPLTEERRKDLIKIVRGEVEGGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD +K K + SED ++ IQK+TD IK +D+ K+ E+M Sbjct: 127 AIRNIRRDANGDVKGLLKDKEISEDEARQSDDAIQKLTDKFIKEMDTLLAAKEAELMEI 185 >gi|258627353|ref|ZP_05722137.1| Ribosome-recycling factor [Vibrio mimicus VM603] gi|258580391|gb|EEW05356.1| Ribosome-recycling factor [Vibrio mimicus VM603] Length = 173 Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats. Identities = 74/173 (42%), Positives = 108/173 (62%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M ++ LK + +RTGR PS+L + V+ YG+ PLNQVANV + R L ++V+D+ Sbjct: 1 MEKSVEALKNGLSKIRTGRAHPSLLTGISVDYYGAPTPLNQVANVVAEDARTLAITVFDR 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 ++ VE+ I S+LGLNP+ G ++R+P+P TEERR LVK+ AE +++VRNIR Sbjct: 61 DLTQKVEKAILMSDLGLNPMSAGTIIRVPLPPLTEERRRDLVKIVRGEAEGGRVAVRNIR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RD + LK K + SED + DIQK+TD+ +K ID K+KE+M Sbjct: 121 RDANNDLKGLLKDKEISEDDERRAQEDIQKLTDAAVKKIDDVLAAKEKELMEV 173 >gi|293394705|ref|ZP_06638997.1| ribosome recycling factor [Serratia odorifera DSM 4582] gi|291422831|gb|EFE96068.1| ribosome recycling factor [Serratia odorifera DSM 4582] Length = 173 Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats. Identities = 74/173 (42%), Positives = 113/173 (65%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M ++ K + +RTGR SPS+LD + VE YG+ PL Q+A++TV + R L ++V+D+ Sbjct: 1 MEKSVEAFKNQISKIRTGRASPSILDGIMVEYYGAATPLRQLASITVEDSRTLKINVFDR 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 + +VE+ I S+LGLNP G +R+P+P TEERR L+KV AE+ ++SVRN+R Sbjct: 61 SLSPAVEKAIMSSDLGLNPSSAGSDIRVPLPALTEERRKDLIKVVRGEAEQGRVSVRNVR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RD D +K K + SED ++D+QK+TD+ IK +D+ +K+KE+M F Sbjct: 121 RDANDKIKALLKDKEISEDEERRAQDDVQKMTDAYIKLVDAALADKEKELMEF 173 >gi|260913177|ref|ZP_05919659.1| ribosome recycling factor [Pasteurella dagmatis ATCC 43325] gi|260632764|gb|EEX50933.1| ribosome recycling factor [Pasteurella dagmatis ATCC 43325] Length = 185 Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM ++ K + +RTGR PS+LD ++VE YGS PL Q+ANV + R L Sbjct: 7 KDTQARMEKSLETFKNHIAKVRTGRAQPSLLDGIQVEYYGSPTPLRQLANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+V+D+ ++++VE+ I S+LGLNP G +R+P+P TEERR L+K+ AE+ KI Sbjct: 67 VTVFDRSLISAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIVKGEAEQGKI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD D +K K + SED +++IQKITD +K +D +K+KE+M F Sbjct: 127 AVRNVRRDANDQIKALLKDKEISEDEERKAQDEIQKITDLYVKKVDEVLADKEKELMDF 185 >gi|307293418|ref|ZP_07573264.1| ribosome recycling factor [Sphingobium chlorophenolicum L-1] gi|306881484|gb|EFN12700.1| ribosome recycling factor [Sphingobium chlorophenolicum L-1] Length = 185 Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats. Identities = 93/180 (51%), Positives = 124/180 (68%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D +++ RM + LK D+ LRTGR + +LD V VE YG+H+PLNQVA V+ EPR Sbjct: 4 YDKADLERRMHGAVESLKGDLAGLRTGRANIQLLDPVTVEVYGAHMPLNQVATVSAPEPR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 ML V VWDK V ++ I + LGLNPIV+GQ LR+P+P+ TEERR L K+A YAE Sbjct: 64 MLSVQVWDKTNVGPCDKAIRSAGLGLNPIVDGQTLRLPIPDLTEERRKELAKLASKYAEG 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++I+VRN+RRDGMD LK K G+ SED LE ++Q++TDSTI +ID+ K+KEI+ Sbjct: 124 ARIAVRNVRRDGMDSLKVDEKKGEISEDERKRLETEVQRLTDSTIADIDAVTAAKEKEIL 183 >gi|217979929|ref|YP_002364076.1| ribosome recycling factor [Methylocella silvestris BL2] gi|254809521|sp|B8EMN5|RRF_METSB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|217505305|gb|ACK52714.1| ribosome recycling factor [Methylocella silvestris BL2] Length = 186 Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats. Identities = 92/186 (49%), Positives = 129/186 (69%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ DL +IK RM I+ LK ++ LRTGR S S+++ V VEAYG +PLNQVA ++V Sbjct: 1 MSAEFDLADIKRRMQGAIATLKHELGGLRTGRASASLIEPVNVEAYGQTMPLNQVATISV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPRML V VWDK MV +V++ I +NLGL+P VEGQVLRI +PE E+RR + KVAH Sbjct: 61 PEPRMLSVQVWDKGMVGAVDKAIRNANLGLSPTVEGQVLRIRIPELNEQRRKEMAKVAHK 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE +++++R++RRDG+D LK+ K + SED E+++QK TD + ++DS K+ Sbjct: 121 YAEDARVAIRHVRRDGIDVLKRLLKDKEISEDDEKRHESEVQKATDQCVADVDSALVAKE 180 Query: 181 KEIMHF 186 +EIM Sbjct: 181 REIMQV 186 >gi|325971044|ref|YP_004247235.1| ribosome-recycling factor [Spirochaeta sp. Buddy] gi|324026282|gb|ADY13041.1| Ribosome-recycling factor [Spirochaeta sp. Buddy] Length = 184 Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats. Identities = 87/186 (46%), Positives = 127/186 (68%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M QV+D + +M ++ L KD LRTGR S S+LD ++V+ YGS P+NQVA V+V Sbjct: 1 MQQVLD--TCESKMLKSLESLSKDFAGLRTGRASASLLDKIRVDYYGSETPINQVATVSV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E RM+V+ WDK +++++E+ I +S+LGL P +G+++R+ P EERR LVK A Sbjct: 59 PEARMIVIQPWDKSVLSAIEKAILKSDLGLPPNNDGKLIRLNFPPLNEERRKQLVKSAKN 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE+S++++RN+RR+ MD LKK +KSG SED + E+ IQK+TDS I I+S +EK+ Sbjct: 119 TAEQSRVAMRNVRREAMDELKKLQKSGDISEDELKDAESKIQKMTDSYITQINSLSDEKE 178 Query: 181 KEIMHF 186 KEIM Sbjct: 179 KEIMEI 184 >gi|256113719|ref|ZP_05454523.1| ribosome recycling factor [Brucella melitensis bv. 3 str. Ether] gi|265995074|ref|ZP_06107631.1| ribosome recycling factor rrf [Brucella melitensis bv. 3 str. Ether] gi|262766187|gb|EEZ11976.1| ribosome recycling factor rrf [Brucella melitensis bv. 3 str. Ether] Length = 186 Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats. Identities = 94/186 (50%), Positives = 125/186 (67%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ D+ ++K RM ++ LK D+ LRTGR S S+L+ + +EAYGS +P+NQVAN++V Sbjct: 1 MSDAFDINDLKRRMEGAVNALKHDLGGLRTGRASASLLEPITIEAYGSTMPINQVANISV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E RML VSVWDK MV +VER I +S LGLNPI +G LRI +PE E+RR LVK+AH Sbjct: 61 PESRMLSVSVWDKSMVGAVERAIRDSGLGLNPITDGMTLRICLPELNEQRRKELVKIAHQ 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE+ +I+ R++RRDGMD LKK K S+D L +QK+TD TI +D K+ Sbjct: 121 YAEQGRIAARHVRRDGMDQLKKLEKDSVISQDESRVLSEKVQKLTDDTIAEMDKIVAVKE 180 Query: 181 KEIMHF 186 EIM Sbjct: 181 GEIMQV 186 >gi|91784116|ref|YP_559322.1| ribosome recycling factor [Burkholderia xenovorans LB400] gi|296158901|ref|ZP_06841729.1| ribosome recycling factor [Burkholderia sp. Ch1-1] gi|122970345|sp|Q13XB9|RRF_BURXL RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|91688070|gb|ABE31270.1| ribosome recycling factor [Burkholderia xenovorans LB400] gi|295890776|gb|EFG70566.1| ribosome recycling factor [Burkholderia sp. Ch1-1] Length = 186 Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + + +M +I K D+ +RTGR +LD ++ + YGS VP++QVAN+T+++ R + Sbjct: 8 KGAEQKMQRSIDAFKNDLSKIRTGRAHTGLLDHIQCDYYGSPVPISQVANLTLIDARTIG 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K+MV VE+ I ES+LGLNP +G V+R+P+P TEERR L KV + AE +K+ Sbjct: 68 VQPWEKKMVPVVEKAIRESDLGLNPATQGDVIRVPMPALTEERRRELTKVVKSEAETAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD + LKK K + SED +D+QK+TD + ID K+ EIM Sbjct: 128 AVRNLRRDANEQLKKLVKDKEISEDDERRAGDDVQKLTDRFVAEIDKLVVTKEAEIMTV 186 >gi|300704228|ref|YP_003745831.1| ribosome recycling factor (ribosome-releasing factor) [Ralstonia solanacearum CFBP2957] gi|299071892|emb|CBJ43221.1| Ribosome recycling factor (Ribosome-releasing factor) [Ralstonia solanacearum CFBP2957] Length = 186 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + +M +I K D+ +RTGR +LD V+V+ YGS VP++QVANV + + R + Sbjct: 8 KSAEQKMQKSIDAFKADLAKVRTGRAHTGLLDHVQVDYYGSMVPISQVANVGLADARTIS 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K++V++VE+ I E++LGLNP G V+R+P+P TEERR L KV + E +K+ Sbjct: 68 VQPWEKKLVSAVEKAIREADLGLNPATMGDVIRVPMPALTEERRKELTKVVKSEGEDAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD + KK K SED ++D+QK+TD + +D EK KEIM Sbjct: 128 AVRNVRRDANEQFKKLVKDKAISEDDERRGQDDVQKLTDRFVAEVDKLVAEKDKEIMTV 186 >gi|170692145|ref|ZP_02883308.1| ribosome recycling factor [Burkholderia graminis C4D1M] gi|170142575|gb|EDT10740.1| ribosome recycling factor [Burkholderia graminis C4D1M] Length = 186 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + + +M +I K D+ +RTGR +LD ++ + YGS VP++QVAN+T+++ R + Sbjct: 8 KGAEQKMQRSIDAFKNDLSKIRTGRAHTGLLDHIQCDYYGSPVPISQVANLTLIDARTIG 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K+MV VE+ I ES+LGLNP +G V+R+P+P TEERR L KV + AE +K+ Sbjct: 68 VQPWEKKMVPVVEKAIRESDLGLNPATQGDVIRVPMPALTEERRRELTKVVKSEAETAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD + LKK K + SED +D+QK+TD + ID K+ EIM Sbjct: 128 AVRNLRRDANEQLKKLVKDKEISEDDERRAGDDVQKLTDKFVAEIDKLVVTKEAEIMTV 186 >gi|56412492|ref|YP_149567.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197361427|ref|YP_002141063.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|62900788|sp|Q5PD60|RRF_SALPA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238689912|sp|B5BAM9|RRF_SALPK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|56126749|gb|AAV76255.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197092903|emb|CAR58332.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 185 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 72/179 (40%), Positives = 112/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM + K + +RTGR SPS+LD + VE YG+ PL Q+A+VTV + R L Sbjct: 7 KDAEVRMEKCVEAFKTQISKVRTGRASPSLLDGIVVEYYGTLTPLRQLASVTVEDSRTLK 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ M +VE+ I S+LGLNP G + +P+P TEERR L K+ AE++++ Sbjct: 67 INVFDRSMGPAVEKAIMASDLGLNPSSAGTDICVPLPPLTEERRKDLTKIVRGEAEQARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD D +K K SED + ++QK+TD+ IK +D+ +K+ E+M F Sbjct: 127 AVRNVRRDANDKVKALLKDKAISEDDDRRSQEEVQKMTDAAIKKVDAALADKEAELMQF 185 >gi|323495359|ref|ZP_08100437.1| ribosome recycling factor [Vibrio brasiliensis LMG 20546] gi|323310430|gb|EGA63616.1| ribosome recycling factor [Vibrio brasiliensis LMG 20546] Length = 185 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ ++RM ++ LK ++ +RTGR PS+L + VE YG+ PLNQVANV + R L Sbjct: 7 QDAQERMEKSVEALKNNLSKVRTGRAHPSLLAGISVEYYGAPTPLNQVANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DKE+ VE+ I S+LGLNP+ G ++R+P+P TEERR LVK+ AE ++ Sbjct: 67 ITVFDKELTQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD LK K + SED +++IQK+TD+ +K +D K+KE+M Sbjct: 127 AIRNIRRDANGELKALLKDKEISEDEDRKGQDEIQKLTDAAVKQVDEVLAAKEKELMEV 185 >gi|56552049|ref|YP_162888.1| ribosome recycling factor [Zymomonas mobilis subsp. mobilis ZM4] gi|241762003|ref|ZP_04760087.1| ribosome recycling factor [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260752418|ref|YP_003225311.1| ribosome recycling factor [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|59802974|sp|Q9X5F0|RRF_ZYMMO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|56543623|gb|AAV89777.1| ribosome recycling factor [Zymomonas mobilis subsp. mobilis ZM4] gi|241373469|gb|EER63056.1| ribosome recycling factor [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258551781|gb|ACV74727.1| ribosome recycling factor [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 185 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 88/180 (48%), Positives = 125/180 (69%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 + +++ RM + LK D LRTGR S S+LD V V+ YG+++PLNQVA V+V EPR Sbjct: 4 YNKADLERRMKGAVESLKSDFSGLRTGRASTSLLDPVTVDVYGANMPLNQVATVSVPEPR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ V VWDK V V++ I + LGLNP+V+GQ+LR+P+P+ TEERR L K+ Y+EK Sbjct: 64 MITVQVWDKSNVTPVDKAIRSAGLGLNPVVDGQMLRLPIPDLTEERRKELAKLVGQYSEK 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++I+VRN+RRDG D +K+ K + SED EN++QK+TD TI +ID+ K+KEI+ Sbjct: 124 ARIAVRNVRRDGNDQIKQDEKKNEISEDEKKRFENEVQKLTDKTIADIDALAVHKEKEIL 183 >gi|163851510|ref|YP_001639553.1| ribosome recycling factor [Methylobacterium extorquens PA1] gi|218530317|ref|YP_002421133.1| ribosome recycling factor [Methylobacterium chloromethanicum CM4] gi|240138677|ref|YP_002963149.1| Ribosome recycling factor (Ribosome releasing factor) (RRF) [Methylobacterium extorquens AM1] gi|254561273|ref|YP_003068368.1| Ribosome recycling factor [Methylobacterium extorquens DM4] gi|238687348|sp|A9W4H6|RRF_METEP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|254809519|sp|B7KZH3|RRF_METC4 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|163663115|gb|ABY30482.1| ribosome recycling factor [Methylobacterium extorquens PA1] gi|218522620|gb|ACK83205.1| ribosome recycling factor [Methylobacterium chloromethanicum CM4] gi|240008646|gb|ACS39872.1| Ribosome recycling factor (Ribosome releasing factor) (RRF) [Methylobacterium extorquens AM1] gi|254268551|emb|CAX24508.1| Ribosome recycling factor (Ribosome releasing factor) (RRF) [Methylobacterium extorquens DM4] Length = 187 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 93/182 (51%), Positives = 128/182 (70%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 DL +IK RM +S L KD+ +LRTGR +PS+LD ++VEAYGS +P+ QVA V+V EPR Sbjct: 6 FDLGDIKRRMQGAVSSLSKDLGSLRTGRATPSLLDPIQVEAYGSSMPMAQVATVSVPEPR 65 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 +L +SVWD+ MV +VE+ I ES+LGLNP+ EGQ +R+ +PE E+RR +VKVAH Y E+ Sbjct: 66 LLSISVWDRSMVTNVEKAIRESDLGLNPMTEGQTIRLRIPEMNEQRRKEMVKVAHKYTEE 125 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++++VR++RRDG+D LKK K G S+D ++QK TD I ID K+KEIM Sbjct: 126 ARVAVRHVRRDGLDILKKLEKDGAISQDDEKRQAAEVQKATDDAINEIDGVLASKEKEIM 185 Query: 185 HF 186 Sbjct: 186 QV 187 >gi|83749795|ref|ZP_00946769.1| Ribosome Recycling Factor (RRF) [Ralstonia solanacearum UW551] gi|207723357|ref|YP_002253756.1| ribosome recycling factor (ribosome-releasing factor) (rrf) protein [Ralstonia solanacearum MolK2] gi|207743241|ref|YP_002259633.1| ribosome recycling factor (ribosome-releasing factor) (rrf) protein [Ralstonia solanacearum IPO1609] gi|83723552|gb|EAP70756.1| Ribosome Recycling Factor (RRF) [Ralstonia solanacearum UW551] gi|206588556|emb|CAQ35519.1| ribosome recycling factor (ribosome-releasing factor) (rrf) protein [Ralstonia solanacearum MolK2] gi|206594638|emb|CAQ61565.1| ribosome recycling factor (ribosome-releasing factor) (rrf) protein [Ralstonia solanacearum IPO1609] Length = 186 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + +M +I K D+ +RTGR +LD V+V+ YGS VP++QVANV + + R + Sbjct: 8 KSAEQKMQKSIDAFKADLAKVRTGRAHAGLLDHVQVDYYGSMVPISQVANVGLADARTIS 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K++V++VE+ I E++LGLNP G V+R+P+P TEERR L KV + E +K+ Sbjct: 68 VQPWEKKLVSAVEKAIREADLGLNPATMGDVIRVPMPALTEERRKELTKVVKSEGEDAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD + KK K SED ++D+QK+TD + +D EK KEIM Sbjct: 128 AVRNVRRDANEQFKKLVKDKAISEDDERRGQDDVQKLTDRFVAEVDKLVAEKDKEIMTV 186 >gi|113461129|ref|YP_719197.1| ribosome recycling factor [Haemophilus somnus 129PT] gi|170717712|ref|YP_001784784.1| ribosome recycling factor [Haemophilus somnus 2336] gi|122945268|sp|Q0I379|RRF_HAES1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|189044058|sp|B0UUI5|RRF_HAES2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|112823172|gb|ABI25261.1| ribosome recycling factor [Haemophilus somnus 129PT] gi|168825841|gb|ACA31212.1| ribosome recycling factor [Haemophilus somnus 2336] Length = 185 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 73/179 (40%), Positives = 116/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM ++ L+ + +RTGR PS+LD ++VE YGS PL Q+ANV + R L Sbjct: 7 KDTQQRMEKSLETLRTHIAKIRTGRAQPSLLDGIQVEYYGSPTPLRQLANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+V+D+ ++++VE+ I S+LGLNP G +R+P+P TEERR L+K+ E+ KI Sbjct: 67 VTVFDRSLISAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIVKGEGEQGKI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD D +K K + SED +++IQKITD+ +K +D +K+KE++ F Sbjct: 127 AIRNVRRDANDQIKALLKDKEISEDEERKAQDEIQKITDTFVKKVDEILADKEKELLDF 185 >gi|156975503|ref|YP_001446410.1| ribosome recycling factor [Vibrio harveyi ATCC BAA-1116] gi|166231528|sp|A7MXZ7|RRF_VIBHB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|156527097|gb|ABU72183.1| hypothetical protein VIBHAR_03234 [Vibrio harveyi ATCC BAA-1116] Length = 185 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 78/179 (43%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK ++ +RTGR PS+L + VE YG+ PLNQVANV + R L Sbjct: 7 KDAQERMDKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAPTPLNQVANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DKE+ VE+ I S+LGLNP+ G ++R+P+P TEERR LVK+ AE S++ Sbjct: 67 ITVFDKELTQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGSRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD LK K + SED +++IQK+TD +K ID K+KE+M Sbjct: 127 AVRNIRRDANSDLKGLLKDKEISEDEDRKAQDEIQKLTDVAVKKIDEVLAAKEKELMEV 185 >gi|119471164|ref|ZP_01613696.1| ribosome releasing factor [Alteromonadales bacterium TW-7] gi|119445820|gb|EAW27102.1| ribosome releasing factor [Alteromonadales bacterium TW-7] Length = 185 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 72/179 (40%), Positives = 109/179 (60%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM +++ L + +RTGR P++LD + V YG+ PLNQVANVT+ + R L Sbjct: 7 KDAQARMQKSVTALGSQLSKIRTGRAHPAILDGIMVSYYGAPTPLNQVANVTIEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + V+DK + +VE+ I S+LGLNP+ G V+R+P+P TEERR L+K+ E ++ Sbjct: 67 IGVFDKSLAQAVEKAIMASDLGLNPMSAGTVIRVPLPPLTEERRKDLIKIVRGEVEGGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD +K K SED E+ IQK+TD IK +D+ K+ E+M Sbjct: 127 AIRNIRRDANGDIKALLKDKDISEDEARQGEDAIQKLTDKFIKEMDTQLTAKEAELMEI 185 >gi|110633737|ref|YP_673945.1| ribosome recycling factor [Mesorhizobium sp. BNC1] gi|123353709|sp|Q11IJ5|RRF_MESSB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|110284721|gb|ABG62780.1| ribosome recycling factor [Chelativorans sp. BNC1] Length = 186 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 93/186 (50%), Positives = 130/186 (69%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M ID +++ R I+ K D+ +LRTGR S ++LD + V+AYG+ +P+NQVA V+V Sbjct: 1 MPDGIDFKDLHRRFDGAIAAFKHDIASLRTGRASANLLDPIHVDAYGASMPVNQVATVSV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPRM+ VSVWD+ +V +V+R I E+NLG NPIVEG LRIP+PE EERR LVK+AH Sbjct: 61 PEPRMISVSVWDQSLVGAVDRAIREANLGFNPIVEGSTLRIPLPELNEERRKELVKIAHQ 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE ++++ R++RRDGM+HLKK+ K G+ S+D + +QK+TD TI ID EK+ Sbjct: 121 YAEHARVAARHVRRDGMEHLKKAEKDGEISQDEARVQSDRVQKMTDETIAAIDKLLAEKE 180 Query: 181 KEIMHF 186 EI+ Sbjct: 181 VEILQV 186 >gi|152968766|ref|YP_001333875.1| ribosome releasing factor [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150953615|gb|ABR75645.1| ribosome releasing factor [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 173 Score = 244 bits (625), Expect = 3e-63, Method: Composition-based stats. Identities = 74/173 (42%), Positives = 112/173 (64%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M + K + +RTGR SPS+LD + VE YG+ PL Q+A+VTV + R L ++V+D+ Sbjct: 1 MEKCVEAFKNQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDR 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 M A+VE+ I S+LGLNP G +R+P+P TEERR L K+ AE+++++VRN+R Sbjct: 61 SMSAAVEKAIMASDLGLNPSSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RD D +K K + SED ++D+QK+TD+ IK +D+ +K+ E+M F Sbjct: 121 RDANDKVKALLKEKEISEDDDRRSQDDVQKMTDAAIKKVDAALADKEAELMQF 173 >gi|32034388|ref|ZP_00134578.1| COG0233: Ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208052|ref|YP_001053277.1| ribosome recycling factor [Actinobacillus pleuropneumoniae L20] gi|165975984|ref|YP_001651577.1| ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190149883|ref|YP_001968408.1| ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303251563|ref|ZP_07337737.1| ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303252201|ref|ZP_07338369.1| ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307245431|ref|ZP_07527519.1| Ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247544|ref|ZP_07529588.1| Ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307249778|ref|ZP_07531756.1| Ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307252124|ref|ZP_07534023.1| Ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307254385|ref|ZP_07536223.1| Ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258844|ref|ZP_07540576.1| Ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307261026|ref|ZP_07542708.1| Ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307263207|ref|ZP_07544827.1| Ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|322514208|ref|ZP_08067270.1| ribosome recycling factor [Actinobacillus ureae ATCC 25976] gi|166230406|sp|A3MZT6|RRF_ACTP2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238687536|sp|B0BUC8|RRF_ACTPJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238692331|sp|B3GXB4|RRF_ACTP7 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|126096844|gb|ABN73672.1| ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165876085|gb|ABY69133.1| ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189915014|gb|ACE61266.1| ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302648984|gb|EFL79172.1| ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302649561|gb|EFL79743.1| ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306853772|gb|EFM85989.1| Ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306855909|gb|EFM88068.1| Ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306858193|gb|EFM90271.1| Ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306860424|gb|EFM92438.1| Ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306862684|gb|EFM94640.1| Ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867195|gb|EFM99051.1| Ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306869328|gb|EFN01123.1| Ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306871424|gb|EFN03148.1| Ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|322119901|gb|EFX91910.1| ribosome recycling factor [Actinobacillus ureae ATCC 25976] Length = 185 Score = 244 bits (625), Expect = 3e-63, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ +DRM ++ LK + +RTGR PS+LD ++VE YGS PL Q+ANV + R L Sbjct: 7 KDTQDRMEKSLEALKSHISKIRTGRAQPSLLDGIQVEYYGSATPLRQLANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+V+D+ ++++VE+ I S+LGLNP G +R+P+P TEERR L+K+ E+ KI Sbjct: 67 VNVFDRSLISAVEKAILTSDLGLNPSSAGATIRVPLPPLTEERRRDLIKIVKGEGEQGKI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD D +K K + SED +++IQKITD +K +D K+KE++ F Sbjct: 127 AIRNVRRDANDQIKALLKDKEISEDEERKAQDEIQKITDGYVKKVDEVLAAKEKELLDF 185 >gi|307256592|ref|ZP_07538373.1| Ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306865002|gb|EFM96904.1| Ribosome recycling factor [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 185 Score = 244 bits (625), Expect = 3e-63, Method: Composition-based stats. Identities = 75/177 (42%), Positives = 114/177 (64%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 +DRM ++ LK + +RTGR PS+LD ++VE YGS PL Q+ANV + R L V+ Sbjct: 9 TQDRMEKSLEALKSHISKIRTGRAQPSLLDGIQVEYYGSATPLRQLANVVAEDARTLAVN 68 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 V+D+ ++++VE+ I S+LGLNP G +R+P+P TEERR L+K+ E+ KI++ Sbjct: 69 VFDRSLISAVEKAILTSDLGLNPSSAGATIRVPLPPLTEERRRDLIKIVKGEGEQGKIAI 128 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RN+RRD D +K K + SED +++IQKITD +K +D K+KE+++F Sbjct: 129 RNVRRDANDQIKALLKDKEISEDEERKAQDEIQKITDGYVKKVDEVLAAKEKELLNF 185 >gi|295106079|emb|CBL03622.1| ribosome recycling factor [Gordonibacter pamelaeae 7-10-1-b] Length = 180 Score = 244 bits (625), Expect = 3e-63, Method: Composition-based stats. Identities = 63/180 (35%), Positives = 105/180 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + ++RM ++ L + ++RTGR S +LD +KV+ YG P+NQ+A + + ML Sbjct: 1 MLQAEERMERALASLGEAFGSVRTGRASALLLDRIKVDYYGVPTPVNQMAGIKTPDAHML 60 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK ++ ++E I ES+LG+ P +G +R+P P TEERR LVK YAE+++ Sbjct: 61 VIEPWDKGVLGAIEHAIMESDLGVTPSNDGSCIRLPFPSLTEERRRELVKQCKNYAEEAR 120 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VR R+D L + K ED + ++QK+TD + +D F++K+ E+M Sbjct: 121 VAVRKARQDANAALDRCVKDDNLPEDDERRAQAEVQKLTDKYVAQVDEAFKKKEAEVMEI 180 >gi|117619336|ref|YP_855717.1| ribosome recycling factor [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|166230407|sp|A0KHG6|RRF_AERHH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|117560743|gb|ABK37691.1| ribosome recycling factor [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 185 Score = 244 bits (625), Expect = 3e-63, Method: Composition-based stats. Identities = 81/179 (45%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + KDRM ++ LK M +RTGR PS+LD ++VE YG+ PL Q+ANV + R L Sbjct: 7 NDAKDRMAKSVESLKTQMSKIRTGRAHPSLLDGIQVEYYGAATPLKQLANVVAEDARTLS 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S++D+ M+ +VE+ I S+LGLNP GQ LR+P+P TEERR L K+ A AE +++ Sbjct: 67 ISIFDRSMIQAVEKAILTSDLGLNPSSNGQTLRVPLPPLTEERRRDLTKIVRAEAEGARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD LK K + SED + +IQK+TDS IK +D K+KE+M Sbjct: 127 AVRNIRRDANADLKALLKDKEISEDDDRRAQEEIQKLTDSFIKLVDEALALKEKELMEI 185 >gi|223041490|ref|ZP_03611693.1| ribosome recycling factor [Actinobacillus minor 202] gi|240948667|ref|ZP_04753039.1| ribosome recycling factor [Actinobacillus minor NM305] gi|223017748|gb|EEF16155.1| ribosome recycling factor [Actinobacillus minor 202] gi|240296883|gb|EER47461.1| ribosome recycling factor [Actinobacillus minor NM305] Length = 185 Score = 244 bits (625), Expect = 3e-63, Method: Composition-based stats. Identities = 78/179 (43%), Positives = 116/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ +DRM ++ LK + +RTGR PS+LD ++VE YGS PL QVANV + R L Sbjct: 7 KDTQDRMEKSLDALKSHISKIRTGRAQPSLLDGIQVEYYGSATPLRQVANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+V+D+ ++++VE+ I S+LGLNP G +R+P+P TEERR L+K+ E+ KI Sbjct: 67 VNVFDRSLISAVEKAILTSDLGLNPSSAGATIRVPLPPLTEERRRDLIKIVKGEGEQGKI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD D +K K + SED +++IQKITDS IK +D K+KE++ F Sbjct: 127 AIRNVRRDANDQIKALLKDKEISEDEERKAQDEIQKITDSYIKKVDEVLAAKEKELLDF 185 >gi|86605415|ref|YP_474178.1| ribosome recycling factor [Synechococcus sp. JA-3-3Ab] gi|86553957|gb|ABC98915.1| ribosome recycling factor [Synechococcus sp. JA-3-3Ab] Length = 182 Score = 244 bits (625), Expect = 3e-63, Method: Composition-based stats. Identities = 73/179 (40%), Positives = 115/179 (64%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 ++L I++ M + ++ T+RTGR + S+LD ++VE YG PL +A++T + Sbjct: 1 MELAEIEELMNKAVQATQRSFNTVRTGRANSSLLDRIQVEYYGVPTPLKALASLTTPDSS 60 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 L++ +D +A++ER I S+LGL P +G+V+R+ +P TEERR L K AE+ Sbjct: 61 TLLIQPFDPSTLAAIERAIVASDLGLTPSNDGKVVRLTIPPLTEERRKELSKQVAKLAEE 120 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 ++S+RNIRRDG+D ++K K+G+ SED SL++ IQK+TD IK ID EK+KE+ Sbjct: 121 GRVSIRNIRRDGIDSVRKREKNGELSEDESKSLQDAIQKLTDRYIKKIDELLAEKEKEL 179 >gi|328553453|gb|AEB23945.1| ribosome recycling factor [Bacillus amyloliquefaciens TA208] Length = 185 Score = 244 bits (625), Expect = 3e-63, Method: Composition-based stats. Identities = 78/180 (43%), Positives = 121/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K+RM ++ +++ ++R GR +PS+LD V VE YG+ PLNQ++++ V E RML Sbjct: 6 LTQTKERMEKAVAAYSRELASVRAGRANPSLLDKVTVEYYGAQTPLNQLSSINVSEARML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV+ +DK + +E+ I +++LG+ P +G ++RI +P TEERR LVKV YAE++K Sbjct: 66 VVTPYDKTAIGDIEKAILKADLGVTPTSDGTIIRIAIPALTEERRKELVKVVKKYAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RRD D LKK K+G +ED + + D+QK+TD + IDS ++K+KEIM Sbjct: 126 VAVRNVRRDSNDELKKLEKNGDITEDELRASSEDVQKLTDEFVSKIDSVTKDKEKEIMEV 185 >gi|319649531|ref|ZP_08003687.1| ribosome recycling factor [Bacillus sp. 2_A_57_CT2] gi|317398693|gb|EFV79375.1| ribosome recycling factor [Bacillus sp. 2_A_57_CT2] Length = 185 Score = 244 bits (625), Expect = 3e-63, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 120/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + + K+RM IS +++ ++R G+ + S+LD + V+ YG+ P+NQ+A V+ E R+L Sbjct: 6 IADAKERMTKAISAYTRELASIRAGKANASLLDRITVDYYGAPTPVNQLAGVSAPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V++ +DK ++ +E+ I +S++GLNP +G V+R+ +P+ TEERR LVKV +E +K Sbjct: 66 VITPYDKSILGEIEKAILKSDIGLNPSNDGSVIRLAIPQLTEERRKDLVKVVKKESEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RN+RRD D LKK K+G +ED + +DIQK+TD I ID +EK+KEI+ Sbjct: 126 VAIRNVRRDANDDLKKLEKNGDITEDDLRGFSDDIQKLTDDHISKIDELTKEKEKEILAV 185 >gi|37926485|pdb|1ISE|A Chain A, Crystal Structure Of A Mutant Of Ribosome Recycling Factor From Escherichia Coli, Arg132gly Length = 185 Score = 244 bits (625), Expect = 3e-63, Method: Composition-based stats. Identities = 73/179 (40%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM + K + +RTGR SPS+LD + VE YG+ PL Q+A+VTV + R L Sbjct: 7 KDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLK 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ M +VE+ I S+LGLNP G +R+P+P TEERR L K+ AE++++ Sbjct: 67 INVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+ RD D +K K + SED ++D+QK+TD+ IK I++ +K+ E+M F Sbjct: 127 AVRNVGRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAALADKEAELMQF 185 >gi|332284282|ref|YP_004416193.1| ribosome recycling factor [Pusillimonas sp. T7-7] gi|330428235|gb|AEC19569.1| ribosome recycling factor [Pusillimonas sp. T7-7] Length = 186 Score = 244 bits (625), Expect = 3e-63, Method: Composition-based stats. Identities = 81/179 (45%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+++ RMG +I LK + +RTGR +LD V+VE YGS VP++QVAN+ +L+ R + Sbjct: 8 QSVESRMGKSIETLKVGLSKIRTGRAHAGILDHVQVEYYGSPVPVSQVANINLLDARTIS 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V VW+K M VE+ I +S+LGLNPI G +R+P+P TEERR L KV E +KI Sbjct: 68 VQVWEKSMAGPVEKAIRDSDLGLNPIAMGDSIRVPMPALTEERRRDLTKVVRTEGEDAKI 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD D LKK K + SED +++++QK+TD + ID +K+ EIM Sbjct: 128 AVRNLRRDANDSLKKLVKDKEISEDDERRMQDEVQKLTDKHVAEIDKLVAQKEAEIMTV 186 >gi|260459217|ref|ZP_05807472.1| ribosome recycling factor [Mesorhizobium opportunistum WSM2075] gi|259034771|gb|EEW36027.1| ribosome recycling factor [Mesorhizobium opportunistum WSM2075] Length = 184 Score = 244 bits (624), Expect = 4e-63, Method: Composition-based stats. Identities = 95/179 (53%), Positives = 129/179 (72%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++K RM I+ K D+ +LRTGR S ++LD ++V+AYG+ +P+NQVANVTV EPRM+ Sbjct: 6 DDLKRRMDGAIAAFKHDLASLRTGRASSNLLDAIQVQAYGTTMPINQVANVTVPEPRMIS 65 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 VSVWDK MV++V+R I ESNLG NPIV+G LRIP+PE E+RR LVK++H YAE +++ Sbjct: 66 VSVWDKSMVSAVDRAIRESNLGFNPIVDGTNLRIPLPELNEQRRKELVKISHGYAENARV 125 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 + R++RRDGMD LKK+ K G SED + +QK+TD TI ID +K+ EIM Sbjct: 126 AARHVRRDGMDFLKKAEKDGDISEDDHRKRSDQVQKLTDETISTIDHLLSDKEAEIMQV 184 >gi|172038505|ref|YP_001805006.1| ribosome recycling factor [Cyanothece sp. ATCC 51142] gi|226749927|sp|B1X0Q1|RRF_CYAA5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|171699959|gb|ACB52940.1| ribosome recycling factor [Cyanothece sp. ATCC 51142] Length = 182 Score = 244 bits (624), Expect = 4e-63, Method: Composition-based stats. Identities = 71/180 (39%), Positives = 113/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++K+ M ++ ++ T+RTGR + S+LD V VE YG+ PL Q+AN++ + + Sbjct: 3 LDDLKENMQKSVEATQRSFNTIRTGRANASILDRVTVEYYGTETPLYQLANISTPDATTI 62 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +DK + +E+ I S++GL P +GQV+R+ +P TEERR LVK+A AE+ K Sbjct: 63 MIQPYDKGSMGQIEKAIQMSDVGLTPNNDGQVIRLNIPPLTEERRKDLVKLASKMAEEGK 122 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD +D ++K K+ SED L++DIQK+TD ID K+K+IM Sbjct: 123 VAIRNIRRDAIDDVRKQEKNSDISEDESRGLQDDIQKVTDQFTDKIDELLAAKEKDIMTV 182 >gi|147677590|ref|YP_001211805.1| ribosome recycling factor [Pelotomaculum thermopropionicum SI] gi|189044063|sp|A5D2T8|RRF_PELTS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|146273687|dbj|BAF59436.1| ribosome recycling factor [Pelotomaculum thermopropionicum SI] Length = 185 Score = 244 bits (624), Expect = 4e-63, Method: Composition-based stats. Identities = 77/180 (42%), Positives = 120/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ + M TI +KK+ +LR GR +P++LD V V YG+ P+NQ+AN++V E R+L Sbjct: 6 IKEAESNMKKTIEVVKKEFASLRAGRATPALLDKVMVNYYGTPTPVNQLANISVPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV WDK ++ +ER I +S+LG+ P +G V+R+ +P+ T+ERR L+KV AE+ + Sbjct: 66 VVQPWDKTVLPEIERAILKSDLGITPASDGNVIRLAIPQLTQERRAELMKVIKKKAEEGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD + LK +K GK SED + ++++QK+TD IK IDS K++EIM Sbjct: 126 VAIRNIRRDTNEQLKSQQKDGKMSEDELKRSQDEVQKLTDRYIKEIDSLLSTKEQEIMQV 185 >gi|300691601|ref|YP_003752596.1| ribosome recycling factor (ribosome-releasing factor) [Ralstonia solanacearum PSI07] gi|299078661|emb|CBJ51319.1| Ribosome recycling factor (Ribosome-releasing factor) [Ralstonia solanacearum PSI07] Length = 186 Score = 244 bits (624), Expect = 4e-63, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + +M +I K D+ +RTGR +LD V+V+ YGS VP++QVAN+ + + R + Sbjct: 8 KSAEQKMQKSIDAFKADLAKVRTGRAHTGLLDHVQVDYYGSMVPISQVANLGLADARTIS 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K+MV++VE+ I E++LGLNP G+V+R+P+P TEERR L KV + E +K+ Sbjct: 68 VQPWEKKMVSAVEKAIREADLGLNPATMGEVIRVPMPPLTEERRKELTKVVKSEGEDAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD + KK K SED ++++QK+TD + +D EK KEIM Sbjct: 128 AVRNVRRDANEQFKKLVKDKAISEDDERRGQDEVQKLTDRFVSEVDKLVAEKDKEIMTV 186 >gi|269966254|ref|ZP_06180343.1| Ribosome-recycling factor [Vibrio alginolyticus 40B] gi|269829169|gb|EEZ83414.1| Ribosome-recycling factor [Vibrio alginolyticus 40B] Length = 185 Score = 244 bits (624), Expect = 4e-63, Method: Composition-based stats. Identities = 77/179 (43%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK ++ +RTGR PS+L + VE YG+ PLNQVANV + R L Sbjct: 7 KDAQERMDKSVEALKNNLSKIRTGRAHPSLLSGISVEYYGAATPLNQVANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DKE+ VE+ I S+LGLNP+ G ++R+P+P TEERR LVK+ AE ++ Sbjct: 67 ITVFDKELTPKVEKAIMTSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD + LK K + SED +++IQK+TD +K ID K+KE+M Sbjct: 127 AVRNIRRDANNDLKALLKDKEISEDEDRKAQDEIQKLTDVAVKKIDEVLAAKEKELMEV 185 >gi|91977324|ref|YP_569983.1| ribosome recycling factor [Rhodopseudomonas palustris BisB5] gi|123721792|sp|Q136A7|RRF_RHOPS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|91683780|gb|ABE40082.1| ribosome recycling factor [Rhodopseudomonas palustris BisB5] Length = 187 Score = 244 bits (624), Expect = 4e-63, Method: Composition-based stats. Identities = 93/185 (50%), Positives = 132/185 (71%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 ++ D+ +K RM L+ ++ LRTGR S SML+ V+V+AYG+H+PLNQVA V+V Sbjct: 3 SEKFDINEVKRRMHGASQALQHELGGLRTGRASASMLEPVQVDAYGTHMPLNQVATVSVP 62 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 EPR+L V VWDK MV +VE+ I +SNLGL+P EGQVLR+ +PE ++RR LVKVAH Y Sbjct: 63 EPRLLSVQVWDKSMVKAVEKAIVDSNLGLSPATEGQVLRLRIPELNQDRRKELVKVAHKY 122 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 AE ++++VR++RRDG+D +KK K+ + SED L++++QK TD+TI ID K+K Sbjct: 123 AEAARVAVRHVRRDGLDIIKKLEKAHEISEDDQKRLDHEVQKATDATISEIDQLLANKEK 182 Query: 182 EIMHF 186 EI+ Sbjct: 183 EILTV 187 >gi|258516352|ref|YP_003192574.1| ribosome recycling factor [Desulfotomaculum acetoxidans DSM 771] gi|257780057|gb|ACV63951.1| ribosome recycling factor [Desulfotomaculum acetoxidans DSM 771] Length = 185 Score = 244 bits (624), Expect = 4e-63, Method: Composition-based stats. Identities = 80/180 (44%), Positives = 121/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ +D M T+ +KKD +LR GR +P +LD + V+ YG+ P+NQ+ANV+V E R+L Sbjct: 6 LEDAEDSMKKTVEVVKKDFASLRAGRATPGLLDKINVDYYGTPTPVNQLANVSVPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK ++ ++E+ I +S+LG+ P +G V+R+ VP+ TEERR LVKV AE+ + Sbjct: 66 VIQPWDKSVIPALEKAILKSDLGITPNSDGVVIRLAVPQLTEERRKDLVKVVKKKAEEGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD D LK +K G +ED ++++QK+TD IK+ID K+KEIM Sbjct: 126 VAVRNIRRDANDLLKSEQKDGNITEDDSRRAQDEVQKLTDKYIKDIDQLMANKEKEIMQV 185 >gi|17987109|ref|NP_539743.1| ribosome recycling factor [Brucella melitensis bv. 1 str. 16M] gi|225852656|ref|YP_002732889.1| ribosome recycling factor [Brucella melitensis ATCC 23457] gi|256044814|ref|ZP_05447718.1| ribosome recycling factor [Brucella melitensis bv. 1 str. Rev.1] gi|256263850|ref|ZP_05466382.1| ribosome recycling factor rrf [Brucella melitensis bv. 2 str. 63/9] gi|260565586|ref|ZP_05836070.1| ribosome recycling factor [Brucella melitensis bv. 1 str. 16M] gi|265991238|ref|ZP_06103795.1| ribosome recycling factor rrf [Brucella melitensis bv. 1 str. Rev.1] gi|3122781|sp|P94340|RRF_BRUME RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=CP24; AltName: Full=Ribosome-releasing factor gi|254809496|sp|C0RJC7|RRF_BRUMB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|1674445|gb|AAB19043.1| CP24 [Brucella melitensis] gi|17982770|gb|AAL52007.1| ribosome recycling factor (rrf) [Brucella melitensis bv. 1 str. 16M] gi|225641021|gb|ACO00935.1| ribosome recycling factor [Brucella melitensis ATCC 23457] gi|260151654|gb|EEW86748.1| ribosome recycling factor [Brucella melitensis bv. 1 str. 16M] gi|263002022|gb|EEZ14597.1| ribosome recycling factor rrf [Brucella melitensis bv. 1 str. Rev.1] gi|263093981|gb|EEZ17915.1| ribosome recycling factor rrf [Brucella melitensis bv. 2 str. 63/9] gi|326409177|gb|ADZ66242.1| ribosome recycling factor [Brucella melitensis M28] gi|326538887|gb|ADZ87102.1| ribosome recycling factor [Brucella melitensis M5-90] Length = 186 Score = 244 bits (624), Expect = 4e-63, Method: Composition-based stats. Identities = 94/186 (50%), Positives = 125/186 (67%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ D+ ++K RM ++ LK D+ LRTGR S S+L+ + +EAYGS +P+NQVAN++V Sbjct: 1 MSDAFDINDLKRRMEGAVNALKHDLGGLRTGRASASLLEPITIEAYGSTMPINQVANISV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E RML VSVWDK MV +VER I +S LGLNPI +G LRI +PE E+RR LVK+AH Sbjct: 61 PESRMLSVSVWDKSMVGAVERAIRDSGLGLNPITDGMTLRIRLPELNEQRRKELVKIAHQ 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE+ +I+ R++RRDGMD LKK K S+D L +QK+TD TI +D K+ Sbjct: 121 YAEQGRIAARHVRRDGMDQLKKLEKDSVISQDESRVLSEKVQKLTDDTIAEMDKIVAVKE 180 Query: 181 KEIMHF 186 EIM Sbjct: 181 GEIMQV 186 >gi|226940990|ref|YP_002796064.1| ribosome recycling factor [Laribacter hongkongensis HLHK9] gi|254809516|sp|C1D9F3|RRF_LARHH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226715917|gb|ACO75055.1| Frr [Laribacter hongkongensis HLHK9] Length = 185 Score = 244 bits (624), Expect = 4e-63, Method: Composition-based stats. Identities = 77/179 (43%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + + +M TI K + +RTGR +LD + V+ YGS P+NQVANVT+++ R + Sbjct: 7 KTAESKMQKTIEAFKHTLAKVRTGRAHAGLLDHITVDYYGSDTPINQVANVTLIDARTIG 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V VW+K M A VE+ I +S+LGLNP+ G+V+R+P+P TEERR L KV AE +++ Sbjct: 67 VQVWEKNMAAKVEKAIRDSDLGLNPMSMGEVIRVPMPALTEERRRDLTKVVKGEAEDARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD + LK K +ED ++DIQK+TD + +D F EK+KE+M Sbjct: 127 AVRNVRRDANNDLKTLLKDKDITEDEERRAQDDIQKLTDKYVAEVDKLFAEKEKELMAI 185 >gi|154253632|ref|YP_001414456.1| ribosome recycling factor [Parvibaculum lavamentivorans DS-1] gi|190360245|sp|A7HY16|RRF_PARL1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|154157582|gb|ABS64799.1| ribosome recycling factor [Parvibaculum lavamentivorans DS-1] Length = 187 Score = 244 bits (624), Expect = 4e-63, Method: Composition-based stats. Identities = 81/185 (43%), Positives = 118/185 (63%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 + D+ + + RM + LK++ LRTGR + S+L+ + VEAYG +P+NQV + V Sbjct: 3 DTTFDIDDTERRMRGALQSLKQEFAGLRTGRATASLLEPIVVEAYGQSMPINQVGTIGVP 62 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 EPRML V VWDK M+++VE+ I S LGLNP V+G ++R+P+PE +ERR L K+A Y Sbjct: 63 EPRMLTVQVWDKGMISAVEKAIRSSGLGLNPNVDGMLIRLPIPELNQERRAELTKIAAKY 122 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 E+++I+VRN+RRD MD LK+ K S+D S +QK+TD I ID+ K+ Sbjct: 123 TEQARIAVRNVRRDAMDELKRLEKDSHMSQDDHKSWSEKVQKLTDKVIGEIDAALAHKEA 182 Query: 182 EIMHF 186 +IM Sbjct: 183 DIMQV 187 >gi|148982441|ref|ZP_01816756.1| ribosome recycling factor [Vibrionales bacterium SWAT-3] gi|145960478|gb|EDK25851.1| ribosome recycling factor [Vibrionales bacterium SWAT-3] Length = 185 Score = 244 bits (624), Expect = 4e-63, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 112/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ L+ + +RTGR PS+L + VE YG+ PL QVANV + R L Sbjct: 7 KDAQERMEKSVDALRNSLQKIRTGRAHPSLLSGLTVEYYGAPTPLTQVANVIAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DK + VE+ I S+LGLNP+ G V+R+P+P TEERR LVK+ AE ++ Sbjct: 67 ITVFDKTLTPLVEKAIMTSDLGLNPMSAGTVIRVPLPPLTEERRKDLVKIVRGEAEGGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD LK K + SED +++IQK+TD+ +KN+D K+KE+M Sbjct: 127 AIRNIRRDANGDLKALLKDKEISEDEDRKAQDEIQKLTDAAVKNVDEVLATKEKELMEV 185 >gi|294635121|ref|ZP_06713632.1| ribosome recycling factor [Edwardsiella tarda ATCC 23685] gi|291091498|gb|EFE24059.1| ribosome recycling factor [Edwardsiella tarda ATCC 23685] Length = 185 Score = 244 bits (624), Expect = 4e-63, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM + K ++ +RTGR P++LD ++VE YG+ PL Q+AN+ + R L Sbjct: 7 KDAETRMEKCVESFKGNISKIRTGRAHPNLLDGIQVEYYGAATPLRQLANIVAEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+V+D+ M ++E+ I S+LGLNP G V+R+P+P TEERR L+K+ + AE ++ Sbjct: 67 VTVFDRSMSGAIEKAILTSDLGLNPSSAGTVIRVPLPPLTEERRKDLIKLVRSEAESGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRN+RRD D +K K + SED ++DIQKITD IK ID+ +K+KE+M F Sbjct: 127 SVRNVRRDANDKVKALLKDKEISEDEDRKSQDDIQKITDLMIKKIDAALADKEKELMEF 185 >gi|188533040|ref|YP_001906837.1| ribosome recycling factor [Erwinia tasmaniensis Et1/99] gi|238689729|sp|B2VE11|RRF_ERWT9 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|188028082|emb|CAO95939.1| Ribosome recycling factor [Erwinia tasmaniensis Et1/99] Length = 185 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM + + + +RTGR SPS+LD + V+ YGS PL Q+A+VTV + R L Sbjct: 7 KDAETRMEKCVEAFRNHISKIRTGRASPSILDGIMVDYYGSATPLRQLASVTVEDSRTLK 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ + A+VE+ I S+LGLNP G +R+P+P TEERR L+KV AE+ ++ Sbjct: 67 INVFDRSIGAAVEKAIMTSDLGLNPSSAGSDIRVPLPALTEERRKDLIKVVRGEAEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRN+RRD D LK K + SED + D+QK+TD IK +D+ +K+ E+M F Sbjct: 127 SVRNVRRDANDKLKALLKDKEISEDDDRRAQEDVQKMTDIFIKKVDAALADKETELMDF 185 >gi|327392800|dbj|BAK10222.1| ribosome recycling factor Frr [Pantoea ananatis AJ13355] Length = 173 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 74/173 (42%), Positives = 111/173 (64%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M + K + +RTGR SPS+LD + VE YG+ PL Q+A+VTV + R L ++V+D+ Sbjct: 1 MDKCVEAFKTTISKVRTGRASPSLLDGIIVEYYGTPTPLRQLASVTVEDSRTLKINVFDR 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 + +VE+ I S+LGLNP G +R+P+P TEERR L+K+ AE+ ++SVRN+R Sbjct: 61 SLGPAVEKAIMASDLGLNPNSAGSDIRVPLPALTEERRKDLIKIVRGEAEQGRVSVRNVR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RD D +K K + SED +++IQK+TD+ IK +D+ EK+ E+M F Sbjct: 121 RDANDKIKALLKDKEISEDDERRSQDEIQKMTDAHIKKVDAALAEKEAELMDF 173 >gi|319783668|ref|YP_004143144.1| ribosome recycling factor [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169556|gb|ADV13094.1| ribosome recycling factor [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 184 Score = 244 bits (623), Expect = 5e-63, Method: Composition-based stats. Identities = 94/179 (52%), Positives = 128/179 (71%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++K RM I+ K D+ +LRTGR S ++LD ++V+AYG+ +P+NQVANV+V EPRM+ Sbjct: 6 DDLKRRMDGAIAAFKHDLASLRTGRASSNLLDAIQVQAYGTTMPINQVANVSVPEPRMIS 65 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 VSVWDK MV +V+R I ESNLG NPIV+G LRIP+PE E+RR LVK++H YAE +++ Sbjct: 66 VSVWDKSMVGAVDRAIRESNLGFNPIVDGTNLRIPLPELNEQRRKELVKISHTYAENARV 125 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 + R++RRDGMD LKK+ K G SED + +QK+TD TI ID +K+ EIM Sbjct: 126 AARHVRRDGMDFLKKAEKDGDISEDDQRKRSDQVQKLTDETISTIDHLLSDKEAEIMQV 184 >gi|261338830|ref|ZP_05966688.1| hypothetical protein ENTCAN_05025 [Enterobacter cancerogenus ATCC 35316] gi|288318653|gb|EFC57591.1| ribosome recycling factor [Enterobacter cancerogenus ATCC 35316] Length = 185 Score = 244 bits (623), Expect = 5e-63, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM + K + +RTGR SPS+LD + VE YG+ PL Q+A+VTV + R L Sbjct: 7 KDAEVRMDKCVEAFKNQISKIRTGRASPSLLDGIIVEYYGTPTPLRQLASVTVEDTRTLK 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ M ++E+ I S+LGLNP G +R+P+P TEERR L+KV AE+ ++ Sbjct: 67 INVFDRSMSPAIEKAIMASDLGLNPSSAGADIRVPLPALTEERRKDLIKVVRGEAEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRN+RRD D +K K + SED ++D+QK+TD+ IK ID+ +K+ E+M F Sbjct: 127 SVRNVRRDANDKVKALLKEKEISEDDDRRSQDDVQKMTDAAIKKIDAALADKEAELMQF 185 >gi|238763976|ref|ZP_04624932.1| Ribosome-recycling factor [Yersinia kristensenii ATCC 33638] gi|238697793|gb|EEP90554.1| Ribosome-recycling factor [Yersinia kristensenii ATCC 33638] Length = 185 Score = 244 bits (623), Expect = 5e-63, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 116/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM + + + +RTGR SPS+LD ++VE YG+ PL Q+AN+ V + R L Sbjct: 7 KDTEVRMEKCLEAFQNHISKIRTGRASPSILDGIQVEYYGTATPLRQLANIVVEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ + A+VE+ I S+LGLNP G V+R+P+P TEERR L+KV A AE+ ++ Sbjct: 67 LTVFDRSLSAAVEKAIMTSDLGLNPSSAGTVIRVPLPALTEERRKDLIKVVRAEAEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RN+RRD D +K K + SED + DIQK+TD+ IK +D+ K+ E+M F Sbjct: 127 SIRNVRRDANDKVKALLKDKEISEDEDRRSQEDIQKLTDAFIKKVDAALAAKETELMDF 185 >gi|220909994|ref|YP_002485305.1| ribosome recycling factor [Cyanothece sp. PCC 7425] gi|254809507|sp|B8HL79|RRF_CYAP4 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|219866605|gb|ACL46944.1| ribosome recycling factor [Cyanothece sp. PCC 7425] Length = 182 Score = 244 bits (623), Expect = 5e-63, Method: Composition-based stats. Identities = 69/177 (38%), Positives = 111/177 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++D M ++ ++ T+RTGR + S+LD V VE YG+ PL +AN++ + + Sbjct: 3 LADVEDHMQKSVEATQRAFNTIRTGRANTSLLDRVTVEYYGAETPLRSLANISTPDSSTI 62 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + +D+ + +E+ I S+LGL P +G V+R+ +P T +RR LVK A AE+ K Sbjct: 63 AIQPFDRNSLNLIEKAISMSDLGLTPNNDGTVIRLNIPPLTSDRRKELVKTASKLAEEGK 122 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +S+RN+RRD +D +KK K+G+ SED V L++ IQK+TD I +D EK+K+I Sbjct: 123 VSIRNVRRDAVDSVKKQGKAGELSEDEVKDLQDKIQKLTDKYIAKVDGLLAEKEKDI 179 >gi|261407947|ref|YP_003244188.1| ribosome recycling factor [Paenibacillus sp. Y412MC10] gi|329929321|ref|ZP_08283074.1| ribosome recycling factor [Paenibacillus sp. HGF5] gi|261284410|gb|ACX66381.1| ribosome recycling factor [Paenibacillus sp. Y412MC10] gi|328936690|gb|EGG33133.1| ribosome recycling factor [Paenibacillus sp. HGF5] Length = 184 Score = 244 bits (623), Expect = 5e-63, Method: Composition-based stats. Identities = 77/179 (43%), Positives = 114/179 (63%), Gaps = 1/179 (0%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N ++RM I LK+D+ TLR GR +P++LD + VE YG+ PLNQ+AN++ + R L+ Sbjct: 7 KNAEERMEKAILSLKRDLATLRAGRAAPALLDRITVEYYGAQTPLNQLANISTPDSRTLM 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + WDK +A +E+ I +S++GL P +G +R+ VP TEERR LVK+ + E++K+ Sbjct: 67 IQPWDKSSLADIEKAIMKSDIGLTPANDGNQIRLVVPALTEERRTELVKMTKKFGEEAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD D +KK K+ SED + DIQK TD I +D K+KEIM Sbjct: 127 AIRNIRRDANDDIKKLEKT-DISEDESRRHQEDIQKATDKFIAEVDKVLVAKEKEIMEV 184 >gi|83858385|ref|ZP_00951907.1| ribosome releasing factor [Oceanicaulis alexandrii HTCC2633] gi|83853208|gb|EAP91060.1| ribosome releasing factor [Oceanicaulis alexandrii HTCC2633] Length = 185 Score = 244 bits (623), Expect = 5e-63, Method: Composition-based stats. Identities = 94/182 (51%), Positives = 127/182 (69%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D+++I+ RM I LKK+ LRTGR S S+LD +KVEAYG+ P+NQV NV+V EPR Sbjct: 4 FDIKDIERRMDGAIDALKKEFGGLRTGRASASLLDPIKVEAYGALTPINQVGNVSVPEPR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ +SVWDK + +VE+ I S+LGLNP+ EG+ LRIP+P EERR L K A AYAE Sbjct: 64 MITISVWDKNLAGAVEKAIRNSSLGLNPVSEGETLRIPIPPLNEERRNELAKTAGAYAEN 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++I+VRN+RRDGMD LK+ K G+ SED L + IQK+TD+ + ID+ + K++EI Sbjct: 124 ARIAVRNVRRDGMDQLKRDEKDGEISEDQHKKLADQIQKLTDAKVSAIDALLKTKQEEIT 183 Query: 185 HF 186 Sbjct: 184 QV 185 >gi|260892482|ref|YP_003238579.1| ribosome recycling factor [Ammonifex degensii KC4] gi|260864623|gb|ACX51729.1| ribosome recycling factor [Ammonifex degensii KC4] Length = 184 Score = 244 bits (623), Expect = 5e-63, Method: Composition-based stats. Identities = 74/180 (41%), Positives = 120/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ + M + KKD+ +RTGR SP++L+ V V+ YG P+NQ+A +T EPR+L Sbjct: 5 LERAELSMKKAVEHFKKDLAAIRTGRASPALLEKVMVDYYGVPTPVNQLATITAPEPRLL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WD+ ++ +E+ I +S+LGL P +GQV+R+ +P+ T+ERR LV+VA AE+++ Sbjct: 65 VIQPWDRSIINEIEKAILKSDLGLTPNNDGQVIRLILPQLTQERREELVRVARKRAEEAR 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRR+ D LK+ +K SED + L+ ++QK+T+ IK +D+ K+KEIM Sbjct: 125 VAIRNIRREANDELKEKQKKENVSEDEIKRLQGEVQKLTEKYIKEVDNLLAAKEKEIMEV 184 >gi|295676822|ref|YP_003605346.1| ribosome recycling factor [Burkholderia sp. CCGE1002] gi|295436665|gb|ADG15835.1| ribosome recycling factor [Burkholderia sp. CCGE1002] Length = 186 Score = 244 bits (623), Expect = 5e-63, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 112/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + + +M +I K D+ +RTGR +LD ++ + YGS VP++QVAN+T+++ R + Sbjct: 8 KGAEQKMQRSIDAFKNDLSKIRTGRAHTGLLDHIQCDYYGSPVPISQVANLTLIDARTIG 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K+MV VE+ I ES+LGLNP G V+R+P+P TEERR L KV + AE +K+ Sbjct: 68 VQPWEKKMVQVVEKAIRESDLGLNPATHGDVIRVPMPALTEERRRELTKVVRSEAETAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD + LKK K + SED +D+QK+TD + ID K+ EIM Sbjct: 128 AVRNLRRDANEQLKKLVKDKEISEDDERRAGDDVQKLTDKFVAEIDKLVTTKEAEIMTV 186 >gi|197105240|ref|YP_002130617.1| ribosome recycling factor protein [Phenylobacterium zucineum HLK1] gi|238690149|sp|B4RBZ1|RRF_PHEZH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|196478660|gb|ACG78188.1| ribosome recycling factor protein [Phenylobacterium zucineum HLK1] Length = 188 Score = 244 bits (623), Expect = 5e-63, Method: Composition-based stats. Identities = 91/180 (50%), Positives = 128/180 (71%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +DRM ++ LK++ +LRTGR S S+LD + V+AYGS +PL QVA V+V EPRM+ Sbjct: 9 LSKYRDRMDKAVAALKEEFGSLRTGRASASLLDQIHVDAYGSSMPLTQVAAVSVPEPRMI 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+VWD+ MV SVE+ I +S+LGLNP+V+GQ LRIP+P TEERR L K+A YAE+ + Sbjct: 69 TVNVWDRGMVVSVEKAIRQSDLGLNPVVDGQTLRIPIPPLTEERRKDLAKIAGRYAEQQR 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD + L+K++K S+D +E ++QK+TD IK ID + K++EIM Sbjct: 129 VAVRNIRRDANEDLRKAQKDNVISQDEEKRMETEVQKMTDEAIKRIDEALKTKEQEIMQV 188 >gi|319408398|emb|CBI82053.1| Ribosome recycling factor [Bartonella schoenbuchensis R1] Length = 186 Score = 244 bits (623), Expect = 5e-63, Method: Composition-based stats. Identities = 96/186 (51%), Positives = 129/186 (69%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 MN + ++K RM +S K ++ LRTGR S S+L+ + VEAYGS VP+ QVAN++V Sbjct: 1 MNVTSMMDDLKRRMDGAVSAFKHELSGLRTGRASASLLEPLTVEAYGSTVPIQQVANISV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPRML VSVWDK MV +VER I +S LG NPI +G LRIP+PE EERR LVK+AH Sbjct: 61 PEPRMLSVSVWDKTMVGAVERAIRDSGLGFNPITDGMNLRIPIPELNEERRKELVKIAHQ 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE+++++ R++RRDGMD+LKK K G+ S+D +L +QK+TD TI +ID K+ Sbjct: 121 YAEQARVAARHVRRDGMDNLKKLEKEGEISQDESRNLSEKVQKLTDETITDIDKILGVKE 180 Query: 181 KEIMHF 186 +IM Sbjct: 181 ADIMQV 186 >gi|187924430|ref|YP_001896072.1| ribosome recycling factor [Burkholderia phytofirmans PsJN] gi|238689610|sp|B2T5J1|RRF_BURPP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|187715624|gb|ACD16848.1| ribosome recycling factor [Burkholderia phytofirmans PsJN] Length = 186 Score = 244 bits (623), Expect = 5e-63, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + + +M +I K D+ +RTGR +LD ++ + YGS VP++QVAN+T+++ R + Sbjct: 8 KGAEQKMQRSIDAFKNDLSKIRTGRAHTGLLDHIQCDYYGSPVPISQVANLTLIDARTIG 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K+MV VE+ I ES+LGLNP +G V+R+P+P TEERR L KV + AE +K+ Sbjct: 68 VQPWEKKMVQVVEKAIRESDLGLNPATQGDVIRVPMPALTEERRRELTKVVKSEAETAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD + LKK K + SED +D+QK+TD + ID K+ EIM Sbjct: 128 AVRNLRRDANEQLKKLVKDKEISEDDERRAGDDVQKLTDKFVAEIDKLVVTKEAEIMTV 186 >gi|320540035|ref|ZP_08039691.1| ribosome recycling factor [Serratia symbiotica str. Tucson] gi|320029884|gb|EFW11907.1| ribosome recycling factor [Serratia symbiotica str. Tucson] Length = 199 Score = 244 bits (623), Expect = 5e-63, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 118/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ RM ++ K + +RTGR SPS+LD + VE YG+ PL Q+A VTV + R L Sbjct: 21 KDADIRMEKSVEAFKNQISKVRTGRASPSILDGIMVEYYGAATPLRQLAIVTVEDSRTLA 80 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++++D+ + ++VE+ I S+LGLNP G V+R+P+P TEERR L+KV A AE+ ++ Sbjct: 81 INLFDRSLGSAVEKAIMSSDLGLNPNSAGSVIRVPLPPLTEERRRDLIKVVRAEAEQGRV 140 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD D +K K + SED +++IQK+TD+ IK +D+ +K+KE++ F Sbjct: 141 AVRNVRRDANDKVKALLKDKEISEDADRRSQDEIQKMTDAYIKLLDAALADKEKELLDF 199 >gi|224825016|ref|ZP_03698122.1| ribosome recycling factor [Lutiella nitroferrum 2002] gi|224602687|gb|EEG08864.1| ribosome recycling factor [Lutiella nitroferrum 2002] Length = 185 Score = 244 bits (623), Expect = 6e-63, Method: Composition-based stats. Identities = 70/179 (39%), Positives = 111/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + +M ++ K D+ +RTGR +LD V V+ YGS VP+NQVANVT+++ R + Sbjct: 7 KSAEQKMQKSLEAFKNDLTKVRTGRAHTGILDHVMVDYYGSDVPVNQVANVTLIDARTIG 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K M+ +E+ I +S+LGLNP G+++R+P+P TEERR L+K+ AE +++ Sbjct: 67 VQPWEKSMLGKIEKAIRDSDLGLNPASMGEIIRVPMPMLTEERRKDLIKLVRGEAEGARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD + K K +ED ++DIQK+TD I +D K+ ++M Sbjct: 127 AVRNIRRDANNEFKNLLKDKSITEDDERRGQDDIQKLTDKYIAEVDKALAAKETDLMAV 185 >gi|319779547|ref|YP_004130460.1| Ribosome recycling factor [Taylorella equigenitalis MCE9] gi|317109571|gb|ADU92317.1| Ribosome recycling factor [Taylorella equigenitalis MCE9] Length = 186 Score = 244 bits (623), Expect = 6e-63, Method: Composition-based stats. Identities = 79/179 (44%), Positives = 111/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + + RM +I LK ++ +RTGR +LD V V+ YGS VP++QVANV+V++ R L Sbjct: 8 ASAESRMNKSIESLKTNLSKIRTGRAHAGILDHVTVDYYGSLVPVSQVANVSVVDARTLS 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K M +++ I ES+LGLNPI G+ +R+P+P TEERR L KV A E +K+ Sbjct: 68 VQPWEKNMAGPIDKAIRESDLGLNPITLGEAIRVPMPALTEERRRDLTKVVRAEGEDAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD D LKK K + SED + IQK+TD + ID EK+ EIM Sbjct: 128 AIRNLRRDSNDTLKKLLKDKEISEDDDRRAQEVIQKMTDKFVGEIDKIVSEKEAEIMKV 186 >gi|119898197|ref|YP_933410.1| ribosome recycling factor [Azoarcus sp. BH72] gi|166230409|sp|A1K6R8|RRF_AZOSB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|119670610|emb|CAL94523.1| Frr protein [Azoarcus sp. BH72] Length = 185 Score = 243 bits (622), Expect = 6e-63, Method: Composition-based stats. Identities = 78/184 (42%), Positives = 115/184 (62%), Gaps = 1/184 (0%) Query: 4 VIDLQNIKD-RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLE 62 + DL+ + +M +I LK D+ +RTGR +LD V VE YGS VP+NQVAN+T+++ Sbjct: 2 ISDLKKTTEQKMQKSIDALKTDLAKIRTGRAHTGLLDHVMVEYYGSMVPINQVANITLID 61 Query: 63 PRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 R + V W+K M+ VE+ I + +LGLNP G+++R+P+P TEERR L KV Sbjct: 62 ARTIGVQTWEKPMLGKVEKAIRDCDLGLNPANMGEIIRVPMPALTEERRRDLTKVVRQEG 121 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 E +K++VRN+RRD HLK + K SED ++DIQK+TD + ID +K++E Sbjct: 122 ETAKVAVRNLRRDANQHLKDAVKDKTISEDDERRSQDDIQKLTDKYVAEIDKLLAQKEQE 181 Query: 183 IMHF 186 +M Sbjct: 182 LMQI 185 >gi|283851250|ref|ZP_06368533.1| ribosome recycling factor [Desulfovibrio sp. FW1012B] gi|283573419|gb|EFC21396.1| ribosome recycling factor [Desulfovibrio sp. FW1012B] Length = 184 Score = 243 bits (622), Expect = 6e-63, Method: Composition-based stats. Identities = 80/186 (43%), Positives = 117/186 (62%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M +V L +DRM +S L K+ LRTGR + S+LD V+VE YGS PL Q+A+V+ Sbjct: 1 MREV--LTEAEDRMKKALSVLDKEFARLRTGRATTSLLDGVRVEYYGSVTPLEQIASVST 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R + + WD++ VER I +S+LGL P+ +G+++RI +P TE+RR L KVA Sbjct: 59 PDSRTITIQPWDRKAFNDVERAILKSDLGLTPVNDGKIIRISIPPLTEDRRKDLAKVAKK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE++K+++RN+RRD + LKK + SED + D+QK+TD I D F +K+ Sbjct: 119 YAEEAKVAIRNVRRDANEALKKKKNDKAISEDDQHKGQEDVQKLTDGYIAKTDEAFSKKE 178 Query: 181 KEIMHF 186 KEIM Sbjct: 179 KEIMEI 184 >gi|110679817|ref|YP_682824.1| ribosome recycling factor [Roseobacter denitrificans OCh 114] gi|123065540|sp|Q166F5|RRF_ROSDO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|109455933|gb|ABG32138.1| ribosome recycling factor [Roseobacter denitrificans OCh 114] Length = 187 Score = 243 bits (622), Expect = 6e-63, Method: Composition-based stats. Identities = 91/188 (48%), Positives = 124/188 (65%), Gaps = 3/188 (1%) Query: 1 MNQ--VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 M++ ++D +I+ RM IS LK + +LRTGR S SML+ V V+AYG P+NQV V Sbjct: 1 MSEDFMLDTDDIERRMDGAISSLKTEFASLRTGRASASMLEPVMVDAYGQRTPINQVGTV 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 V EPRM+ ++VWDK +V VE+ I ES LG+NP + G ++ +P+PE EERR L KVA Sbjct: 61 NVPEPRMVTINVWDKGLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRRELSKVA 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 YAE +++S+RNIRRDGMD +KK++ G SED E ++Q+ITD IK ID Sbjct: 121 GQYAEHARVSIRNIRRDGMDQIKKAKADG-LSEDDQKLWEGEVQEITDRYIKGIDDQLAT 179 Query: 179 KKKEIMHF 186 K+ EIM Sbjct: 180 KQAEIMQV 187 >gi|15603852|ref|NP_246926.1| ribosome recycling factor [Pasteurella multocida subsp. multocida str. Pm70] gi|13431830|sp|P57984|RRF_PASMU RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|12722427|gb|AAK04071.1| Errf [Pasteurella multocida subsp. multocida str. Pm70] Length = 185 Score = 243 bits (622), Expect = 6e-63, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 116/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM ++ K + +RTGR PS+LD ++VE YGS PL Q+ANV + R L Sbjct: 7 KDTQLRMEKSLETFKNHIAKVRTGRAQPSLLDGIQVEYYGSPTPLRQLANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+V+D+ ++++VE+ I S+LGLNP G +R+P+P TEERR L+K+ AE+ KI Sbjct: 67 VTVFDRSLISAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIVKGEAEQGKI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD D +K K + SED +++IQKITD+ +K +D +K+KE++ F Sbjct: 127 AVRNVRRDANDQIKALLKDKEISEDEERKAQDEIQKITDTFVKKVDEVLADKEKELLDF 185 >gi|302383605|ref|YP_003819428.1| ribosome recycling factor [Brevundimonas subvibrioides ATCC 15264] gi|302194233|gb|ADL01805.1| ribosome recycling factor [Brevundimonas subvibrioides ATCC 15264] Length = 185 Score = 243 bits (622), Expect = 6e-63, Method: Composition-based stats. Identities = 96/181 (53%), Positives = 126/181 (69%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 DL+ +DRM ++ LK++ LRTGR + +LD V+V+AYGS PLN VA ++V EPRM Sbjct: 5 DLKTYRDRMDRAVTSLKEEFQGLRTGRANAGLLDPVQVQAYGSTSPLNAVAAISVPEPRM 64 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 + VSVWDK MV VE+ I + LGLNPIV+GQ LRIPVP TEERR L K+A YAE+ Sbjct: 65 ISVSVWDKSMVGPVEKAIRAAGLGLNPIVDGQTLRIPVPPLTEERRKELAKLAGKYAEQQ 124 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 KI+VRN+RRD D LKK+ K+G+ S+D +E ++QK TD+ IK ID + K+ EIM Sbjct: 125 KIAVRNVRRDANDDLKKAEKAGEISQDDQKKMETEVQKDTDAAIKRIDETLKTKEVEIMQ 184 Query: 186 F 186 Sbjct: 185 V 185 >gi|163801782|ref|ZP_02195679.1| ribosome releasing factor [Vibrio sp. AND4] gi|159174290|gb|EDP59094.1| ribosome releasing factor [Vibrio sp. AND4] Length = 185 Score = 243 bits (622), Expect = 6e-63, Method: Composition-based stats. Identities = 77/179 (43%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK ++ +RTGR PS+L + VE YG+ PLNQVANV + R L Sbjct: 7 KDAQERMDKSVEALKNNLAKVRTGRAHPSLLSGISVEYYGASTPLNQVANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DKE+ VE+ I S+LGLNP+ G ++R+P+P TEERR LVK+ AE +++ Sbjct: 67 ITVFDKELTQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD LK K + SED +++IQK+TD +K ID K+KE+M Sbjct: 127 AVRNIRRDANSDLKGLLKDKEISEDEDRKAQDEIQKLTDVAVKKIDEVLAAKEKELMEV 185 >gi|237808853|ref|YP_002893293.1| ribosome recycling factor [Tolumonas auensis DSM 9187] gi|259494557|sp|C4L861|RRF_TOLAT RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|237501114|gb|ACQ93707.1| ribosome recycling factor [Tolumonas auensis DSM 9187] Length = 185 Score = 243 bits (622), Expect = 7e-63, Method: Composition-based stats. Identities = 81/178 (45%), Positives = 112/178 (62%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 + KDRM ++ LK M +RTGR P++LD + VE YGS PL QVANV + R L V Sbjct: 8 DAKDRMTKSVDSLKSHMSKIRTGRAQPALLDGIMVEYYGSATPLRQVANVVAEDSRTLAV 67 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 SV+D+ M+ +VE+ I S+LGLNP G +R+P+P TEERR L+K+ A AE++++S Sbjct: 68 SVFDRSMIQAVEKAIMTSDLGLNPSSAGTTIRVPLPALTEERRKDLIKLVRAEAEQARVS 127 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 VRN+RRD LK K SED + +IQK+TDS +K +D K+KE+M Sbjct: 128 VRNVRRDCNADLKALLKDKDISEDDDRRAQEEIQKLTDSFVKLVDDLLAAKEKELMEI 185 >gi|332289930|ref|YP_004420782.1| ribosome recycling factor [Gallibacterium anatis UMN179] gi|330432826|gb|AEC17885.1| ribosome recycling factor [Gallibacterium anatis UMN179] Length = 185 Score = 243 bits (622), Expect = 7e-63, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + RM ++ LK + +RTGR PS+LD + VE YG+ PL QVANV + R L Sbjct: 7 DEAQQRMEKSVEALKNQISKIRTGRAHPSLLDGIHVEYYGAATPLRQVANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ ++++VE+ I S+LGLNP G V+R+P+P TEERR L K+ A AE+ ++ Sbjct: 67 ITVFDRSLISAVEKAIMASDLGLNPASAGTVIRVPLPPLTEERRRDLTKIVRAEAEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD D +K K + SE+ +++IQK+TD +K +D EK+KE+M F Sbjct: 127 AVRNIRRDANDKIKALLKEKEISENDERKAQDEIQKLTDLYVKKVDEALAEKEKELMDF 185 >gi|117928746|ref|YP_873297.1| ribosome recycling factor [Acidothermus cellulolyticus 11B] gi|166230403|sp|A0LV51|RRF_ACIC1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|117649209|gb|ABK53311.1| ribosome recycling factor [Acidothermus cellulolyticus 11B] Length = 185 Score = 243 bits (622), Expect = 7e-63, Method: Composition-based stats. Identities = 61/180 (33%), Positives = 112/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + +++ +RTGR +P++ + VE YG+ PLNQ+A+ TV + R++ Sbjct: 6 LLEAEEKMEKATNVARENFAAIRTGRANPALFSKITVEYYGTPTPLNQLASFTVADARLI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +DK + ++E+ I +S+LG+NP +G V+R+ +P TEERR +K+A AE+++ Sbjct: 66 VIHPYDKGSLRAIEKAIRDSDLGVNPTDDGSVIRVAIPPLTEERRRDYIKMARHEAEEAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRR D L K +K G+ ED V E ++ ++T + +ID + K+ E++ Sbjct: 126 VAIRNIRRHAKDALDKLQKDGEVGEDDVRRAEKELDELTHKYVAHIDEMLKHKEAELLEV 185 >gi|103487441|ref|YP_617002.1| ribosome recycling factor [Sphingopyxis alaskensis RB2256] gi|122984925|sp|Q1GRQ3|RRF_SPHAL RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|98977518|gb|ABF53669.1| ribosome recycling factor [Sphingopyxis alaskensis RB2256] Length = 184 Score = 243 bits (622), Expect = 8e-63, Method: Composition-based stats. Identities = 90/180 (50%), Positives = 127/180 (70%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D +++ RM + LK D+ LRTGR + ++LD V VE YGS +PLNQ+A+++V EPR Sbjct: 4 YDKADLERRMHGAVESLKHDLAGLRTGRANAALLDPVTVEVYGSQMPLNQIASISVPEPR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 ML V VWDK V V++ I + LGLNPIV+GQ+LR+P+PE T+ERR L K+A YAEK Sbjct: 64 MLSVQVWDKANVGPVDKAIRSAGLGLNPIVDGQMLRLPIPEMTQERRKELSKLAGQYAEK 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++++VRN+RRDGMD+LK+ + SED E ++QK+TD+TI ID+ K+KEI+ Sbjct: 124 ARVAVRNVRRDGMDNLKQDENKKEISEDERKRHETEVQKLTDATIAEIDAAATAKEKEIL 183 >gi|88706580|ref|ZP_01104283.1| Ribosome recycling factor [Congregibacter litoralis KT71] gi|88699076|gb|EAQ96192.1| Ribosome recycling factor [Congregibacter litoralis KT71] Length = 185 Score = 243 bits (621), Expect = 8e-63, Method: Composition-based stats. Identities = 72/179 (40%), Positives = 110/179 (61%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ RM +++ L + +RTGR PS+LD +KV YG+ PLNQVANV V + R L Sbjct: 7 KDADSRMQNSLEALGTNFNKIRTGRAHPSLLDGIKVSYYGADTPLNQVANVNVEDARTLS 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++ WD+ M+ +ER I +S+LGLNP G+V+RIP+P TEE R +K A + AE +++ Sbjct: 67 LTAWDRSMIPDIERAIMKSDLGLNPATAGEVIRIPMPALTEETRKGYIKQARSEAEAARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RN RRD M LK K + SED ++ IQK+TDS + ++ K+ +++ Sbjct: 127 SIRNARRDAMGMLKDMVKDKEISEDDERRGQDQIQKLTDSFVARVEEMLTAKEADLLEI 185 >gi|229513899|ref|ZP_04403361.1| ribosome recycling factor [Vibrio cholerae TMA 21] gi|229349080|gb|EEO14037.1| ribosome recycling factor [Vibrio cholerae TMA 21] Length = 185 Score = 243 bits (621), Expect = 8e-63, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK + +RTGR PS+L + V+ YG+ PLNQVANV + R L Sbjct: 7 KDAQERMEKSVEALKNGLSKIRTGRAHPSLLMGISVDYYGAPTPLNQVANVIAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+E+ VE+ I S+LGLNP+ G ++R+P+P TEERR LVK+ AE ++ Sbjct: 67 ITVFDRELTQKVEKAILMSDLGLNPMSAGTIIRVPLPPLTEERRRDLVKIVRGEAEGGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD + LK K + SED + +IQK+TD+ +K ID K+KE+M Sbjct: 127 AVRNIRRDANNDLKALLKDKEISEDDERRAQEEIQKLTDAAVKKIDDVLAVKEKELMEV 185 >gi|91223476|ref|ZP_01258741.1| ribosome releasing factor [Vibrio alginolyticus 12G01] gi|262393522|ref|YP_003285376.1| ribosome recycling factor [Vibrio sp. Ex25] gi|91191562|gb|EAS77826.1| ribosome releasing factor [Vibrio alginolyticus 12G01] gi|262337116|gb|ACY50911.1| ribosome recycling factor [Vibrio sp. Ex25] Length = 185 Score = 243 bits (621), Expect = 8e-63, Method: Composition-based stats. Identities = 77/179 (43%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK ++ +RTGR PS+L + VE YG+ PLNQVANV + R L Sbjct: 7 KDAQERMDKSVEALKNNLSKIRTGRAHPSLLSGISVEYYGAATPLNQVANVIAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DKE+ VE+ I S+LGLNP+ G ++R+P+P TEERR LVK+ AE ++ Sbjct: 67 ITVFDKELTPKVEKAIMTSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD + LK K + SED +++IQK+TD +K ID K+KE+M Sbjct: 127 AVRNIRRDANNDLKALLKDKEISEDEDRKAQDEIQKLTDVAVKKIDEVLAAKEKELMEV 185 >gi|126657954|ref|ZP_01729107.1| ribosome releasing factor [Cyanothece sp. CCY0110] gi|126620894|gb|EAZ91610.1| ribosome releasing factor [Cyanothece sp. CCY0110] Length = 181 Score = 243 bits (621), Expect = 8e-63, Method: Composition-based stats. Identities = 71/180 (39%), Positives = 113/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++KD M ++ ++ T+RTGR + S+LD V VE YG+ PL Q+AN++ + + Sbjct: 2 LDDLKDNMQKSVEATQRSFNTIRTGRANASILDRVTVEYYGTETPLYQLANISTPDATTI 61 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +DK + +E+ I S++GL P +G V+R+ +P TEERR LVK+A AE+ K Sbjct: 62 MIQPYDKGSMGQIEKAIQMSDVGLTPNNDGNVIRLNIPPLTEERRKDLVKLASKMAEEGK 121 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD +D ++K K+ SED L++DIQK+TD + ID K+K+IM Sbjct: 122 VAIRNIRRDAIDDVRKQEKNSDISEDESRGLQDDIQKVTDQFTEKIDDLLTAKEKDIMTV 181 >gi|157372022|ref|YP_001480011.1| ribosome recycling factor [Serratia proteamaculans 568] gi|166991559|sp|A8GIE3|RRF_SERP5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|157323786|gb|ABV42883.1| ribosome recycling factor [Serratia proteamaculans 568] Length = 185 Score = 243 bits (621), Expect = 9e-63, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 117/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ RM ++ K + +RTGR SPS+LD + VE YG+ PL Q+A+VTV + R L Sbjct: 7 KDADSRMEKSVEAFKNQISKIRTGRASPSILDGIMVEYYGASTPLRQLASVTVEDSRTLK 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ + A+VE+ I S+LGLNP G +R+P+P TEERR L+K+ AE+ ++ Sbjct: 67 INVFDRSISAAVEKAIMSSDLGLNPSSAGSDIRVPLPALTEERRKDLIKIVRNEAEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD D +K K + SED ++D+QK+TD+ IK +D+ +K+KE+M F Sbjct: 127 AVRNVRRDANDKVKALLKDKEISEDEDRRSQDDVQKLTDAYIKLLDAALADKEKELMEF 185 >gi|310764947|gb|ADP09897.1| ribosome recycling factor [Erwinia sp. Ejp617] Length = 185 Score = 243 bits (621), Expect = 9e-63, Method: Composition-based stats. Identities = 77/179 (43%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM + K + +RTGR SPS+LD + V+ YGS PL Q+A+VTV + R L Sbjct: 7 KDAETRMEKCVEAFKNHISKIRTGRASPSILDGIMVDYYGSATPLRQLASVTVEDSRTLK 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ + A+VE+ I S+LGLNP G +R+P+P TEERR L+KV AE+ ++ Sbjct: 67 INVFDRSIGAAVEKAIMTSDLGLNPSSAGSDIRVPLPALTEERRKDLIKVVRGEAEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRN+RRD D LK K + SED + D+QK+TD IK +D+ +K+ E+M F Sbjct: 127 SVRNVRRDANDKLKALLKDKEISEDDDRRAQEDVQKMTDIFIKKVDASLADKETELMDF 185 >gi|238019366|ref|ZP_04599792.1| hypothetical protein VEIDISOL_01230 [Veillonella dispar ATCC 17748] gi|237864065|gb|EEP65355.1| hypothetical protein VEIDISOL_01230 [Veillonella dispar ATCC 17748] Length = 186 Score = 243 bits (621), Expect = 9e-63, Method: Composition-based stats. Identities = 83/180 (46%), Positives = 122/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 LQ ++RM +I LK + ++RTGR S ++LD V V+ YGS P+NQVAN++V EPRM+ Sbjct: 7 LQQAEERMNKSIEALKHEFASIRTGRASVALLDKVMVDYYGSPSPINQVANISVPEPRMI 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V++ WDK M+ ++E+ I +S+LGLNP +G +R+ +P+ TEERR +VKV H AE +K Sbjct: 67 VIAPWDKTMIGAIEKAILQSDLGLNPGNDGAQIRLTIPQLTEERRKEIVKVVHKKAEDAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD D LKK K+ +ED + IQK+TD+ IK ID K+K+++ Sbjct: 127 VAVRNIRRDVNDALKKEEKAKTITEDDAKDGLDQIQKLTDAKIKQIDELKAVKEKDVLEV 186 >gi|257065047|ref|YP_003144719.1| ribosome recycling factor [Slackia heliotrinireducens DSM 20476] gi|256792700|gb|ACV23370.1| ribosome recycling factor [Slackia heliotrinireducens DSM 20476] Length = 184 Score = 243 bits (621), Expect = 9e-63, Method: Composition-based stats. Identities = 72/186 (38%), Positives = 110/186 (59%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M ++ L + + M + I LK ++RTGR + +LD ++V+ YG P+NQ+A V V Sbjct: 1 MEEI--LADAEIGMDEAIDNLKTAFASVRTGRANAMVLDKIRVDYYGVPTPINQMAAVKV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E ML V WDK M+ +VE I S+LG+ P +G V+R+P P TEERR L K H Sbjct: 59 PEAHMLTVEPWDKSMLRAVEAAIMASDLGITPSNDGHVIRLPFPVLTEERRKELAKTCHT 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE+ +I++RN+RR+ + K +K+ + ED E +QK+TDS +K +D + K+ Sbjct: 119 YAEECRIAIRNVRREANAKIDKGKKASEIPEDDARRGEEQVQKLTDSYVKKVDELLKAKE 178 Query: 181 KEIMHF 186 E+M Sbjct: 179 AEVMSI 184 >gi|123443482|ref|YP_001007455.1| ribosome recycling factor [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332160595|ref|YP_004297172.1| ribosome recycling factor [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|166231529|sp|A1JP79|RRF_YERE8 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|122090443|emb|CAL13311.1| ribosome recycling factor [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318606927|emb|CBY28425.1| ribosome recycling factor [Yersinia enterocolitica subsp. palearctica Y11] gi|325664825|gb|ADZ41469.1| ribosome recycling factor [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330859602|emb|CBX69942.1| ribosome-recycling factor [Yersinia enterocolitica W22703] Length = 185 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 117/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM + + + +RTGR SPS+LD ++VE YG+ PL Q+AN+ V + R L Sbjct: 7 KDTEVRMEKCLEVFQNHISKIRTGRASPSILDGIQVEYYGTATPLRQLANIVVEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ + A+VE+ I S+LGLNP G V+R+P+P TEERR L+KV A AE+ ++ Sbjct: 67 LTVFDRSLSAAVEKAIMTSDLGLNPSSAGTVIRVPLPALTEERRKDLIKVVRAEAEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RN+RRD + +K K + SED ++DIQK+TD+ IK +D+ K+ E+M F Sbjct: 127 SIRNVRRDANEKVKALLKDKEISEDEDRRSQDDIQKLTDAFIKKVDAALAAKETELMDF 185 >gi|85373585|ref|YP_457647.1| ribosome recycling factor [Erythrobacter litoralis HTCC2594] gi|122544868|sp|Q2NBU1|RRF_ERYLH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|84786668|gb|ABC62850.1| ribosome recycling factor [Erythrobacter litoralis HTCC2594] Length = 185 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 93/180 (51%), Positives = 126/180 (70%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D +I+ RM + LK D+ LRTGR + S+LD V VE YG+ +PLNQVA V EPR Sbjct: 4 YDKADIERRMAGAVESLKSDLSGLRTGRANTSLLDPVVVEVYGAMMPLNQVATVNAPEPR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 ML V VWDK V++VE+GI ++NLGLNP+ +GQ +R+P+P+ TEERR L K+A YAEK Sbjct: 64 MLAVQVWDKANVSAVEKGITKANLGLNPMTDGQTVRLPMPDLTEERRKELAKLAGQYAEK 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +KI++RN+RRDGM+ LK K+ SED +E+++QK+TD + DS E K+KEIM Sbjct: 124 AKIAIRNVRRDGMEDLKADEKAKDISEDDRKRMEDEVQKLTDKYVAEADSAAEAKEKEIM 183 >gi|49475413|ref|YP_033454.1| ribosome recycling factor [Bartonella henselae str. Houston-1] gi|60390254|sp|Q6G5C6|RRF_BARHE RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|49238219|emb|CAF27429.1| Ribosome recycling factor [Bartonella henselae str. Houston-1] Length = 186 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 98/186 (52%), Positives = 129/186 (69%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ + ++K RM IS K ++ LRTGR S S+L+ + VEAYGS V +NQVAN++V Sbjct: 1 MSVTSIMDDLKRRMHGAISAFKHELGGLRTGRASASLLEPLTVEAYGSVVHINQVANISV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPRML VSVWDK MV +VER I +S LGLNPI +G LRIP+PE EERR LVK+AH Sbjct: 61 PEPRMLSVSVWDKTMVGAVERAIRDSGLGLNPITDGMNLRIPLPELNEERRKELVKIAHQ 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE+++++ R++RRDGMD+LKK K G+ +D L +QK+TD TI +ID K+ Sbjct: 121 YAEQARVATRHVRRDGMDNLKKLEKEGEIGQDEAHGLSEKVQKLTDETIADIDKILAVKE 180 Query: 181 KEIMHF 186 EIMH Sbjct: 181 SEIMHV 186 >gi|302339357|ref|YP_003804563.1| ribosome recycling factor [Spirochaeta smaragdinae DSM 11293] gi|301636542|gb|ADK81969.1| ribosome recycling factor [Spirochaeta smaragdinae DSM 11293] Length = 184 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 79/180 (43%), Positives = 115/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ + RM +IS L D LRTGR S ++ D +KV+ YG PL+Q A ++V E R++ Sbjct: 5 LKDAESRMKKSISALGDDFNGLRTGRASAALFDKIKVDYYGQSTPLSQAATISVPEARLV 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK ++ +ER I +S L +NP +G+V+RI +P TEERR LVKVA AE+ K Sbjct: 65 VIQPWDKGLLGEIERAIQKSELSVNPNNDGKVIRINIPPLTEERRKELVKVAKNQAEQCK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD + LKK +KSG SED ++IQK+TD ++ E K++EIM Sbjct: 125 VAIRNIRRDANEELKKIQKSGDISEDEEKRGADEIQKLTDKHVEEAGKLLEAKEQEIMEV 184 >gi|144897597|emb|CAM74461.1| Ribosome recycling factor [Magnetospirillum gryphiswaldense MSR-1] Length = 190 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 87/179 (48%), Positives = 119/179 (66%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +++ RM +T+ LKK+ LR+GR S+L+ V VEAYG +P+ Q + V EPRML Sbjct: 12 KDVAHRMDNTVEVLKKEFSGLRSGRAVASLLEPVVVEAYGQTMPITQCGTIAVPEPRMLT 71 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V VWDK V +VE+ I E+ LGLNP +GQ++R+P+P EERR L KVA YAE+++I Sbjct: 72 VQVWDKGQVKAVEKAIREAGLGLNPQTDGQLVRVPIPSLNEERRKELQKVAGKYAEQARI 131 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRDGMD LKK K G SED + E ++Q +TD TIK +D K+KEIM Sbjct: 132 AIRNVRRDGMDTLKKMEKDGHISEDEIKKHEKEVQSLTDDTIKKVDETLAHKEKEIMQV 190 >gi|161524433|ref|YP_001579445.1| ribosome recycling factor [Burkholderia multivorans ATCC 17616] gi|189350812|ref|YP_001946440.1| ribosome recycling factor [Burkholderia multivorans ATCC 17616] gi|221198319|ref|ZP_03571365.1| ribosome recycling factor [Burkholderia multivorans CGD2M] gi|221208258|ref|ZP_03581262.1| ribosome recycling factor [Burkholderia multivorans CGD2] gi|221215460|ref|ZP_03588424.1| ribosome recycling factor [Burkholderia multivorans CGD1] gi|238687071|sp|A9AIL7|RRF_BURM1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|160341862|gb|ABX14948.1| ribosome recycling factor [Burkholderia multivorans ATCC 17616] gi|189334834|dbj|BAG43904.1| ribosome recycling factor [Burkholderia multivorans ATCC 17616] gi|221164644|gb|EED97126.1| ribosome recycling factor [Burkholderia multivorans CGD1] gi|221171906|gb|EEE04349.1| ribosome recycling factor [Burkholderia multivorans CGD2] gi|221182251|gb|EEE14652.1| ribosome recycling factor [Burkholderia multivorans CGD2M] Length = 186 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++ +M +I K D+ +RTGR +LD V+V+ YGS VP++QVAN+T+++ R + Sbjct: 8 KGVEQKMQRSIEAFKNDLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVANLTLVDARTIG 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K MVA VE+ I E++LGLNP G ++R+P+P TEERR L KV E +K+ Sbjct: 68 VQPWEKNMVAKVEKAIREADLGLNPATAGDLIRVPMPPLTEERRRELTKVVKGEGETAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD + LKK K + SED +D+QK+TD + ID + K+ EIM Sbjct: 128 AIRNLRRDANEALKKLVKDKEISEDDERRAGDDVQKLTDKHVAEIDKLVQTKEAEIMTV 186 >gi|260897261|ref|ZP_05905757.1| ribosome recycling factor [Vibrio parahaemolyticus Peru-466] gi|308085361|gb|EFO35056.1| ribosome recycling factor [Vibrio parahaemolyticus Peru-466] Length = 180 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 77/179 (43%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK ++ +RTGR PS+L + VE YG+ PLNQVANV + R L Sbjct: 2 KDAQERMDKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAATPLNQVANVVAEDARTLA 61 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DKE+ VE+ I S+LGLNP+ G ++R+P+P TEERR LVK+ AE ++ Sbjct: 62 ITVFDKELTQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGRV 121 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD + LK K + SED + +IQK+TD +K ID K+KE+M Sbjct: 122 AVRNIRRDANNDLKALLKDKEISEDEDRKAQEEIQKLTDVAVKKIDEVLAAKEKELMEV 180 >gi|329850619|ref|ZP_08265464.1| ribosome recycling factor [Asticcacaulis biprosthecum C19] gi|328840934|gb|EGF90505.1| ribosome recycling factor [Asticcacaulis biprosthecum C19] Length = 185 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 94/181 (51%), Positives = 118/181 (65%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 DL KDRM + LK+D LRTGR S S+LD V V+AYGS +PLN A V+V E RM Sbjct: 5 DLNRYKDRMDKAVVALKEDYSGLRTGRASASLLDQVVVDAYGSTMPLNACAAVSVPEARM 64 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 + VSVWD+ + SVE+ I + LGLNPI +GQ LRIP+P TEERR LVK+A YAE Sbjct: 65 ISVSVWDRGLTVSVEKAIRNAGLGLNPITDGQTLRIPIPPLTEERRKELVKIAGKYAETQ 124 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +++VRN+RR+ MD LKK+ K+ SED +IQ TDS IK ID + K+ EIM Sbjct: 125 RVAVRNVRREAMDDLKKAEKASDISEDEEKKGGTEIQGFTDSAIKRIDEVLKAKEAEIMQ 184 Query: 186 F 186 Sbjct: 185 V 185 >gi|23099044|ref|NP_692510.1| ribosome recycling factor [Oceanobacillus iheyensis HTE831] gi|33301568|sp|Q8EQV0|RRF_OCEIH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|22777272|dbj|BAC13545.1| ribosome recycling factor [Oceanobacillus iheyensis HTE831] Length = 185 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 71/181 (39%), Positives = 117/181 (64%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 +L+ ++ +M + L K++ ++R GR +PS+LD V V+ YG+ PLNQ+A+V E R+ Sbjct: 5 ELKEMEQKMEQAVQALSKNLASVRAGRANPSILDSVFVDYYGASTPLNQLASVGAPEARL 64 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 L ++ +DK + +E+ I +++LGL+P +G ++RI +P T+ERR LVKV Y+E++ Sbjct: 65 LTITPYDKSAIGDIEKAIQKADLGLSPSSDGNIIRINIPALTQERRKDLVKVVGKYSEEA 124 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 K+ +RNIRRD D LKK K+G +ED + ++D+Q T+ I ID + K+ EIM Sbjct: 125 KVQIRNIRRDTNDQLKKMEKNGDLTEDDLRGFQDDVQTSTNDYINKIDQLAKNKENEIME 184 Query: 186 F 186 Sbjct: 185 V 185 >gi|330993376|ref|ZP_08317311.1| Ribosome-recycling factor [Gluconacetobacter sp. SXCC-1] gi|329759406|gb|EGG75915.1| Ribosome-recycling factor [Gluconacetobacter sp. SXCC-1] Length = 188 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 84/180 (46%), Positives = 119/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++ RM I L++D LR+GR SP++L+ V+VEAYG VPL QV ++ V E RML Sbjct: 9 LADLTRRMDGAIESLRRDFAGLRSGRASPALLEPVRVEAYGGEVPLTQVGSIAVPEARML 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V VWD+ +V +VER I ++ LGLNP +GQ +R+P+P+ TEERR L + A YAE + Sbjct: 69 TVQVWDRTLVGAVERAIRDAGLGLNPAADGQTVRVPIPQLTEERRNELARAAGKYAENGR 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I+VR +RRDGMD +K K+G SED V + + IQK+TD ++ +D EK++EI Sbjct: 129 IAVRGVRRDGMDQTRKLEKAGDISEDDVKTWSDAIQKLTDQYVRRVDELLVEKEREIKQV 188 >gi|172057857|ref|YP_001814317.1| ribosome recycling factor [Exiguobacterium sibiricum 255-15] gi|229564225|sp|B1YI73|RRF_EXIS2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|171990378|gb|ACB61300.1| ribosome recycling factor [Exiguobacterium sibiricum 255-15] Length = 185 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 79/186 (42%), Positives = 119/186 (63%), Gaps = 1/186 (0%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+Q I ++ ++RM LKK++ TLR GR + S+LD V+V+ YGS PLNQVANV Sbjct: 1 MSQAI-MKQAEERMEKAHLSLKKELATLRAGRANVSILDPVQVDYYGSPTPLNQVANVNT 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R+++++ WDK MV +E+ I ++LGL P +G V+R+ +P TE+RR LVK+ Sbjct: 60 PEARLILITPWDKSMVTEIEKAIQRADLGLAPSSDGTVIRLAIPPLTEDRRKELVKLVKK 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 Y E+ K+++RNIRRD + LKK K G +ED + D+Q +TD +K +D +K+ Sbjct: 120 YTEEGKVALRNIRRDTNEQLKKQEKDGVLTEDDLRGYTEDVQTLTDKFVKVLDQTAADKE 179 Query: 181 KEIMHF 186 +EIM Sbjct: 180 QEIMEV 185 >gi|164687908|ref|ZP_02211936.1| hypothetical protein CLOBAR_01553 [Clostridium bartlettii DSM 16795] gi|164602321|gb|EDQ95786.1| hypothetical protein CLOBAR_01553 [Clostridium bartlettii DSM 16795] Length = 184 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 78/179 (43%), Positives = 116/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++ +M TI LK + T+R GR + MLD ++V+ YG+ P+NQ+ +++V EPR LV Sbjct: 6 KKLQAQMDKTIEALKYEFSTIRAGRANAQMLDKIRVDYYGTPTPINQIGSISVPEPRTLV 65 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++ WDK + +E+ I S+LGLNP +G V+R+ VP TEERR+ L K A AE+ K+ Sbjct: 66 INPWDKSAMKEIEKAIMNSDLGLNPTNDGDVIRLNVPALTEERRIELTKKAKKAAEEFKV 125 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +RN RRD D LKK +K G+ +ED + + D+QK+TD IK IDS K+K+IM Sbjct: 126 RIRNERRDANDKLKKMQKDGEITEDELKRGQEDVQKLTDKYIKEIDSLLAVKEKDIMAV 184 >gi|187928370|ref|YP_001898857.1| ribosome recycling factor [Ralstonia pickettii 12J] gi|238691813|sp|B2UB09|RRF_RALPJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|187725260|gb|ACD26425.1| ribosome recycling factor [Ralstonia pickettii 12J] Length = 186 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 79/179 (44%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N + +M +I LK D+ +RTGR +LD V+V+ YGS VP++QVANVT+++ R + Sbjct: 8 KNAEQKMQKSIEALKTDLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVANVTLVDARTIG 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K+MV +VE+ I E++LGLNP G ++R+P P TEERR L KV E +K+ Sbjct: 68 VQPWEKKMVQAVEKAIREADLGLNPATMGDIIRVPTPALTEERRKELTKVVKGEGEDAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD + LKK K SED +++QK+TD + ID EK KEIM Sbjct: 128 AVRNLRRDANEQLKKLVKDKAISEDDERRGGDEVQKLTDKFVAEIDKLVAEKDKEIMTV 186 >gi|330817436|ref|YP_004361141.1| Ribosome releasing factor [Burkholderia gladioli BSR3] gi|327369829|gb|AEA61185.1| Ribosome releasing factor [Burkholderia gladioli BSR3] Length = 186 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 78/179 (43%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++ +M +I K D+ +RTGR +LD V+V+ YGS VP++QVAN+T+ + R + Sbjct: 8 KGVEQKMQRSIEAFKNDLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVANLTLADARTIS 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K MVA VE+ I ES+LGLNP G +R+P+P TEERR L KV + AE +K+ Sbjct: 68 VQPWEKPMVAKVEKAIRESDLGLNPATSGDAIRVPMPALTEERRRELAKVVKSEAETAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD + LKK K + SED +D+QK+TD + ID + K+ EIM Sbjct: 128 AVRNLRRDANEQLKKLVKDKEISEDDERRASDDVQKLTDKYVAEIDKLAQTKEAEIMTV 186 >gi|309782134|ref|ZP_07676864.1| ribosome recycling factor [Ralstonia sp. 5_7_47FAA] gi|308919200|gb|EFP64867.1| ribosome recycling factor [Ralstonia sp. 5_7_47FAA] Length = 186 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 81/179 (45%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N + +M +I LK D+ +RTGR +LD V+V+ YGS VP++QVANVT+++ R + Sbjct: 8 KNAEQKMQKSIEALKTDLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVANVTLVDARTIG 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K+MV +VE+ I E++LGLNP G ++R+P P TEERR L KV E +K+ Sbjct: 68 VQPWEKKMVQAVEKAIREADLGLNPATMGDIIRVPTPALTEERRKELTKVVKGEGEDAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD + LKK K SED +DIQK+TD + ID EK KEIM Sbjct: 128 AVRNLRRDANEQLKKLVKDKAISEDDERRGGDDIQKLTDKFVAEIDKLVAEKDKEIMTV 186 >gi|51892632|ref|YP_075323.1| ribosome recycling factor [Symbiobacterium thermophilum IAM 14863] gi|60390686|sp|Q67PB4|RRF_SYMTH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|51856321|dbj|BAD40479.1| ribosome recycling factor [Symbiobacterium thermophilum IAM 14863] Length = 185 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 74/180 (41%), Positives = 118/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +++ ++RM + ++++ +R R +P++LD V+VEAYGS VP+N VA + V +PR L Sbjct: 6 IKDAEERMKKAVEVFRQELAGMRANRATPALLDKVRVEAYGSEVPVNNVATIEVPDPRTL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WD+ ++ ++ER I+ S+LGLNP +GQV+R+ +P TEERR LVKV E+ + Sbjct: 66 VIKPWDRSLIKAIERAINASDLGLNPTNDGQVIRLSIPPMTEERRRELVKVVAKRTEEQR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD + +KK K SED ++++QK+TD IK +D K+KEIM Sbjct: 126 VAIRNIRRDANEQIKKLEKDKAVSEDESKRAQDEVQKLTDKYIKEVDQLMAAKEKEIMEV 185 >gi|222529797|ref|YP_002573679.1| ribosome recycling factor [Caldicellulosiruptor bescii DSM 6725] gi|312127157|ref|YP_003992031.1| ribosome recycling factor [Caldicellulosiruptor hydrothermalis 108] gi|312621978|ref|YP_004023591.1| ribosome recycling factor [Caldicellulosiruptor kronotskyensis 2002] gi|254809487|sp|B9MKP8|RRF_ANATD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|222456644|gb|ACM60906.1| ribosome recycling factor [Caldicellulosiruptor bescii DSM 6725] gi|311777176|gb|ADQ06662.1| ribosome recycling factor [Caldicellulosiruptor hydrothermalis 108] gi|312202445|gb|ADQ45772.1| ribosome recycling factor [Caldicellulosiruptor kronotskyensis 2002] Length = 184 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 74/180 (41%), Positives = 116/180 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q +++M I LK++ T+R GR +P +LD V V+ YG P+ QVA++TV E RM+ Sbjct: 5 IQVAEEKMKKAIETLKEEFATIRAGRANPHILDKVMVDYYGVPTPIPQVASITVPEARMI 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ W+ M+ +E+ I +S+LG+NP +G+V+R+ PE TEERR LVK AE +K Sbjct: 65 VIQPWEARMLKEIEKAIQKSDLGVNPTNDGKVIRLIFPELTEERRKELVKQVKKMAEDAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRR+ +D KK +K+ + +ED + E D+QK+ D I+ I+ K+KEIM Sbjct: 125 VAIRNIRREALDEYKKMKKNNEITEDDLKDAEEDVQKLHDKYIEQIEKLLSAKEKEIMEV 184 >gi|86138423|ref|ZP_01056997.1| ribosome recycling factor [Roseobacter sp. MED193] gi|85824948|gb|EAQ45149.1| ribosome recycling factor [Roseobacter sp. MED193] Length = 187 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 86/182 (47%), Positives = 122/182 (67%), Gaps = 1/182 (0%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 +D ++K RM ++ LK + +LRTGR S +ML+ V VEAYGS P+NQV V V EPR Sbjct: 7 LDTDDLKRRMDGAMANLKTEFASLRTGRASGAMLEPVMVEAYGSMTPINQVGTVNVPEPR 66 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ ++VWDK +V VE+ I S LG+NP + G ++ +P+PE EERR L KVA YAE Sbjct: 67 MVTINVWDKGLVGPVEKAIRNSGLGINPQLNGTIIMLPIPELNEERRRELGKVAGQYAEH 126 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++S+RN+RRDGMD +KK++ G SED E+++Q +TD+ IK++D E K+ EIM Sbjct: 127 CRVSIRNVRRDGMDQIKKAKSDG-MSEDDQKFWESEVQDLTDAMIKSVDDALEHKQAEIM 185 Query: 185 HF 186 Sbjct: 186 QV 187 >gi|260772225|ref|ZP_05881141.1| ribosome recycling factor [Vibrio metschnikovii CIP 69.14] gi|260611364|gb|EEX36567.1| ribosome recycling factor [Vibrio metschnikovii CIP 69.14] Length = 185 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK ++ +RTGR PS+L + VE YG+ PL+Q+ANV + R L Sbjct: 7 KDAQERMDKSVEALKNNLSKIRTGRAHPSLLSGLSVEYYGASTPLSQIANVIAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DKE+ VE+ I S+LGLNP+ G V+R+P+P TEERR LVK+ AE ++ Sbjct: 67 ITVFDKELTPKVEKAILMSDLGLNPMSAGTVIRVPLPPLTEERRRDLVKIVRGEAEGGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD + LK K + SED +++IQK+TD+ +K ID K+KE+M Sbjct: 127 AVRNIRRDANNDLKALLKDKEISEDEERKAQDEIQKLTDAAVKKIDDILAVKEKELMEV 185 >gi|56751022|ref|YP_171723.1| ribosome recycling factor [Synechococcus elongatus PCC 6301] gi|81299318|ref|YP_399526.1| ribosome recycling factor [Synechococcus elongatus PCC 7942] gi|60390663|sp|Q5N3B7|RRF_SYNP6 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|123557390|sp|Q31QY0|RRF_SYNE7 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|56685981|dbj|BAD79203.1| ribosome recycling factor [Synechococcus elongatus PCC 6301] gi|81168199|gb|ABB56539.1| ribosome recycling factor [Synechococcus elongatus PCC 7942] Length = 182 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 61/180 (33%), Positives = 111/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++ M ++ + T+RTGR + S+LD + V+ YGS PL +A+++ + L Sbjct: 3 LADVESTMQKSVEATLRSFNTIRTGRANASLLDKIVVDYYGSETPLKSLASISTPDASTL 62 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + +D+ + ++E+ I S++GL P +GQ++R+ +P T +RR LVK+A YAE+ K Sbjct: 63 QIQPFDRSSMGAIEKAISLSDIGLTPNNDGQIIRLNIPPLTSDRRKELVKLAAKYAEEGK 122 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RN+RRD +D ++K KSG+ SED ++ +QK+TD ++ +K+K+IM Sbjct: 123 VAIRNVRRDAIDSIRKLEKSGEISEDDARDQQDQVQKLTDKFSAKVEQLLSDKEKDIMTV 182 >gi|53805188|ref|YP_113089.1| ribosome recycling factor [Methylococcus capsulatus str. Bath] gi|60390238|sp|Q60BA7|RRF_METCA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|53758949|gb|AAU93240.1| ribosome recycling factor [Methylococcus capsulatus str. Bath] Length = 185 Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats. Identities = 76/175 (43%), Positives = 109/175 (62%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 +RM +I LK + +RTGR PS+L+ ++V YG+ VPL QVANV V + R L V+ W Sbjct: 11 ERMQKSIEALKHEFAKIRTGRAHPSLLEHIRVSYYGNEVPLTQVANVAVEDARSLAVTPW 70 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 ++ MV ++E+ I S+LGLNP G V+R+P+P TEERR L+KV AE ++++RN Sbjct: 71 ERNMVQAIEKAIMTSDLGLNPSTAGTVIRVPLPPLTEERRRDLIKVVRQEAENGRVAIRN 130 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 IRRD + LK + K SED + IQK TD IK ID E+K+ +++ Sbjct: 131 IRRDANNELKAALKEKLISEDEDRRSQEQIQKTTDQFIKEIDKLLEQKEADLLAV 185 >gi|312796247|ref|YP_004029169.1| ribosome Recycling Factor (RRF) [Burkholderia rhizoxinica HKI 454] gi|312168022|emb|CBW75025.1| Ribosome Recycling Factor (RRF) [Burkholderia rhizoxinica HKI 454] Length = 186 Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 116/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + + +M ++ K D+ +RTGR +LD ++V+ YGS+VP++QVAN+T+++ R + Sbjct: 8 KGAEQKMQRSLEAFKSDLAKIRTGRAHTGLLDHIQVDYYGSNVPISQVANLTLVDARTIG 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K+MVA VE+ I ES+LGLNP +G ++R+P+P TEERR L KV + E +K+ Sbjct: 68 VQPWEKKMVAVVEKAIRESDLGLNPATQGDLIRVPMPALTEERRRELTKVVKSEGESAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD D LKK K SED ++++QK+TD + I+ + K+ EIM Sbjct: 128 AVRNLRRDANDQLKKLLKDKDISEDDERRAQDEVQKLTDKFVAEIEKLVQTKETEIMTV 186 >gi|315499832|ref|YP_004088635.1| ribosome recycling factor [Asticcacaulis excentricus CB 48] gi|315417844|gb|ADU14484.1| ribosome recycling factor [Asticcacaulis excentricus CB 48] Length = 185 Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats. Identities = 86/181 (47%), Positives = 117/181 (64%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 DL KDRM +++ LK D LRTGR S +L+ + V+AYGS + + A ++V EPRM Sbjct: 5 DLNKYKDRMDKSVTALKDDFGGLRTGRASAGLLEGITVDAYGSAMSILSCAAISVPEPRM 64 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 + V+VWDK +V SVE+ I S LGLNP+ +GQ LR+P+P TEERR L K+A YAE+ Sbjct: 65 ISVNVWDKGLVVSVEKAIRNSGLGLNPVTDGQTLRVPIPPLTEERRKELAKIAGKYAEEK 124 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +++VRN+RRD D LKK+ K SED + ++QK TD IK ID + K+ EIM Sbjct: 125 RVAVRNVRRDANDELKKAEKDSLISEDEQKKMTTEVQKFTDEAIKRIDEMLKVKEAEIMQ 184 Query: 186 F 186 Sbjct: 185 V 185 >gi|167586858|ref|ZP_02379246.1| ribosome recycling factor [Burkholderia ubonensis Bu] Length = 186 Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++ +M +I K D+ +RTGR +LD V+V+ YGS VP++QVAN+T+++ R + Sbjct: 8 KGVEQKMQRSIEAFKNDLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVANLTLVDARTIG 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K MVA VE+ I E++LGLNP G ++R+P+P TEERR L KV + E +K+ Sbjct: 68 VQPWEKNMVAKVEKAIREADLGLNPATSGDLIRVPMPPLTEERRRELTKVVKSEGETAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD + LKK K + SED +D+QK+TD + ID + K+ EIM Sbjct: 128 AIRNLRRDANEQLKKLVKDKEISEDDERRAGDDVQKLTDKHVTEIDKLVQSKEAEIMTV 186 >gi|241662946|ref|YP_002981306.1| ribosome recycling factor [Ralstonia pickettii 12D] gi|240864973|gb|ACS62634.1| ribosome recycling factor [Ralstonia pickettii 12D] Length = 186 Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats. Identities = 81/179 (45%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N + +M +I LK D+ +RTGR +LD V+V+ YGS VP++QVANVT+++ R + Sbjct: 8 KNAEQKMQKSIDALKTDLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVANVTLVDARTIG 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K+MV +VE+ I E++LGLNP G ++R+P P TEERR L KV E +K+ Sbjct: 68 VQPWEKKMVQAVEKAIREADLGLNPATMGDIIRVPTPALTEERRKELTKVVKGEGEDAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD + LKK K SED +DIQK+TD + ID EK KEIM Sbjct: 128 AVRNLRRDANEQLKKLVKDKAISEDDERRGGDDIQKLTDKFVAEIDKLVAEKDKEIMTV 186 >gi|313893396|ref|ZP_07826968.1| ribosome recycling factor [Veillonella sp. oral taxon 158 str. F0412] gi|313442037|gb|EFR60457.1| ribosome recycling factor [Veillonella sp. oral taxon 158 str. F0412] Length = 186 Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats. Identities = 82/180 (45%), Positives = 124/180 (68%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 LQ ++RM +I LK + ++RTGR S ++LD V V+ YGS P+NQVAN++V EPRM+ Sbjct: 7 LQQAEERMNKSIEALKHEFASIRTGRASVALLDKVMVDYYGSPSPINQVANISVPEPRMI 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V++ WDK M+ ++E+ I +S+LGLNP +G +R+ +P+ TEERR +VKV H AE +K Sbjct: 67 VIAPWDKTMIGAIEKAILQSDLGLNPGNDGAQIRLTIPQLTEERRKEIVKVVHKKAEDAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD D LKK K+ +ED ++IQK+TD+ +K+ID K+K+++ Sbjct: 127 VAVRNIRRDVNDALKKEEKAKTITEDDAKDGLDEIQKLTDAKVKHIDELKAVKEKDVLEV 186 >gi|270160174|ref|ZP_06188830.1| ribosome recycling factor [Legionella longbeachae D-4968] gi|289165053|ref|YP_003455191.1| Ribosome recycling factor [Legionella longbeachae NSW150] gi|269988513|gb|EEZ94768.1| ribosome recycling factor [Legionella longbeachae D-4968] gi|288858226|emb|CBJ12094.1| Ribosome recycling factor [Legionella longbeachae NSW150] Length = 185 Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats. Identities = 79/179 (44%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ + RM TI L+ DM +RTGR + +LD V+V+ YG+ PL+QVANVT + R ++ Sbjct: 7 QDSERRMKKTIEALRIDMSKIRTGRANVGLLDHVQVDYYGNLTPLSQVANVTASDSRTIL 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+ W+K MV+++E+ I S+LGLNP G +R+P+P TEERR L+KV AE+ K+ Sbjct: 67 VTPWEKSMVSAIEKAILTSDLGLNPATTGNAIRVPMPPLTEERRKELIKVVRNEAEQGKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RNIRRD + LK K SED IQK+TD I +D+ EK+K++M Sbjct: 127 SIRNIRRDANNQLKDLVKDKSISEDDERRAAEAIQKLTDKYILEVDALLAEKEKDLMEV 185 >gi|254513846|ref|ZP_05125907.1| ribosome recycling factor [gamma proteobacterium NOR5-3] gi|219676089|gb|EED32454.1| ribosome recycling factor [gamma proteobacterium NOR5-3] Length = 185 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 72/179 (40%), Positives = 109/179 (60%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + RM +++ L + +RTGR PS+LD +KV YG+ PL+QVANV V + R L Sbjct: 7 KEADSRMKNSLEALGTNFNKIRTGRAHPSLLDGIKVSYYGADTPLSQVANVNVEDARTLS 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++ WD+ M+ +ER I +S+LGLNP G+V+RIP+P TEE R +K A + AE +++ Sbjct: 67 LTAWDRSMIPDIERAIMKSDLGLNPATAGEVIRIPMPALTEETRKGYIKQARSEAEAARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRN RRD M LK+ K + ED ++ IQK+TDS + +D K+ +++ Sbjct: 127 SVRNARRDAMGMLKELVKDKEIGEDDERRGQDQIQKLTDSFVARVDEMLTAKEADLLEI 185 >gi|167950442|ref|ZP_02537516.1| ribosome recycling factor [Endoriftia persephone 'Hot96_1+Hot96_2'] gi|110589434|gb|ABG77226.1| ribosome recycling factor [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 173 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 76/173 (43%), Positives = 110/173 (63%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M ++ L ++ +RTGR PS+LD +KV+ YGS PLNQVAN+ + + R L V+ W+K Sbjct: 1 MDKSVQALHNELAKIRTGRAHPSLLDHIKVDYYGSETPLNQVANINIEDARTLAVTPWEK 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 MV +VE+ I S+LGLNP+ G V+R+P+P TEERR ++++A AE ++++VRNIR Sbjct: 61 TMVQAVEKAIMTSDLGLNPMSAGTVIRVPMPPLTEERRKDMIRIARNEAEGARVAVRNIR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RD LK K SED + IQK+TD +K ID K+K++M F Sbjct: 121 RDANHDLKDLVKEKMISEDDERRGQEIIQKLTDQHVKTIDEVLAVKEKDLMEF 173 >gi|126654121|ref|ZP_01725939.1| Frr [Bacillus sp. B14905] gi|126589401|gb|EAZ83551.1| Frr [Bacillus sp. B14905] Length = 185 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 120/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ KD+M TI+ +++ ++R GR + S+LD + V+ YG+ P+NQ+A V+V E R+L Sbjct: 6 LEQAKDKMNKTIAAFTRELSSIRAGRANASLLDRIMVDYYGAPTPINQLAGVSVPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V++ +DK ++ +E+ I +S++G+ P +G ++R+ +P TEERR LVK AE +K Sbjct: 66 VITPYDKTILGEIEKAIMKSDIGITPTNDGSIIRLMIPALTEERRKDLVKQVKKEAEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I+VRN+RRD D LKK K+G+ +ED + +DIQK+TD I +D ++K+KEI+ Sbjct: 126 IAVRNVRRDANDDLKKLEKAGEITEDDLRGYGDDIQKLTDEFIVKVDQVTKDKEKEILEV 185 >gi|218247353|ref|YP_002372724.1| ribosome recycling factor [Cyanothece sp. PCC 8801] gi|218167831|gb|ACK66568.1| ribosome recycling factor [Cyanothece sp. PCC 8801] Length = 181 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 74/180 (41%), Positives = 117/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++D M ++ ++ T+RTGR + S+LD V VE YG PLNQ+AN+T + + Sbjct: 2 LAELEDNMQKSVEATQRSFNTIRTGRANASLLDRVIVEYYGMETPLNQLANITTPDATTI 61 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + +DK + ++E+ I+ S+LGL P +G+V+R+ +P TEERR LVK+A AE+ K Sbjct: 62 NILPYDKGSMGAIEKAINLSDLGLTPNNDGKVIRLNIPPLTEERRKELVKLAGKLAEEGK 121 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRDG+D ++K K+ + SED +L+++IQKITD ID + K+K+IM Sbjct: 122 VAIRNIRRDGIDTVRKQEKNNEISEDESRNLQDEIQKITDKFTTKIDELLKVKEKDIMTV 181 >gi|257061312|ref|YP_003139200.1| ribosome recycling factor [Cyanothece sp. PCC 8802] gi|256591478|gb|ACV02365.1| ribosome recycling factor [Cyanothece sp. PCC 8802] Length = 181 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 74/180 (41%), Positives = 116/180 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++D M ++ ++ T+RTGR + S+LD V VE YG PLNQ+AN+T + + Sbjct: 2 LAELEDNMQKSVEATQRSFNTIRTGRANASLLDRVIVEYYGMETPLNQLANITTPDATTI 61 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + +DK + ++E+ I+ S+LGL P +G+V+R+ +P TEERR LVK+A AE+ K Sbjct: 62 NILPYDKGSMGAIEKAINLSDLGLTPNNDGKVIRLNIPPLTEERRKELVKLAGKLAEEGK 121 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRDG+D ++K K+ SED +L+++IQKITD ID + K+K+IM Sbjct: 122 VAIRNIRRDGIDTVRKQEKNNDISEDESRNLQDEIQKITDKFTTKIDELLKVKEKDIMTV 181 >gi|302872259|ref|YP_003840895.1| ribosome recycling factor [Caldicellulosiruptor obsidiansis OB47] gi|312135566|ref|YP_004002904.1| ribosome recycling factor [Caldicellulosiruptor owensensis OL] gi|312793072|ref|YP_004025995.1| ribosome recycling factor [Caldicellulosiruptor kristjanssonii 177R1B] gi|302575118|gb|ADL42909.1| ribosome recycling factor [Caldicellulosiruptor obsidiansis OB47] gi|311775617|gb|ADQ05104.1| ribosome recycling factor [Caldicellulosiruptor owensensis OL] gi|312180212|gb|ADQ40382.1| ribosome recycling factor [Caldicellulosiruptor kristjanssonii 177R1B] Length = 184 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 74/180 (41%), Positives = 116/180 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q +++M I LK++ T+R GR +P +LD V V+ YG P+ QVA++TV E RM+ Sbjct: 5 IQVAEEKMKKAIETLKEEFATVRAGRANPHILDKVMVDYYGVPTPIPQVASITVPEARMI 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ W+ M+ +E+ I +S+LG+NP +G+V+R+ PE TEERR LVK AE +K Sbjct: 65 VIQPWEARMLKEIEKAIQKSDLGVNPTNDGKVIRLIFPELTEERRKELVKQVKKMAEDAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRR+ +D KK +K+ + +ED + E D+QK+ D I+ I+ K+KEIM Sbjct: 125 VAIRNIRREALDEYKKMKKNNEITEDDLKDAEEDVQKLHDKYIEQIEKLLSAKEKEIMEV 184 >gi|260433807|ref|ZP_05787778.1| ribosome recycling factor [Silicibacter lacuscaerulensis ITI-1157] gi|260417635|gb|EEX10894.1| ribosome recycling factor [Silicibacter lacuscaerulensis ITI-1157] Length = 187 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 86/182 (47%), Positives = 126/182 (69%), Gaps = 1/182 (0%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 +D+ ++K RM ++ L+ + +LRTGR S SMLD + V+AYGS P+NQV V V EPR Sbjct: 7 LDIDDLKRRMEGAMANLRTEFASLRTGRASASMLDPIMVDAYGSMTPINQVGTVNVPEPR 66 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ ++VWDK +V VE+ I ES LG+NP + G ++ +P+PE EERR L KVA YAE Sbjct: 67 MVTINVWDKSLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRRELGKVAGHYAEH 126 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++++RN+RRDGMD +KK++ +G SED EN++Q++TD IK +D+ E K+ EIM Sbjct: 127 ARVAIRNVRRDGMDQIKKAKANG-LSEDDQKFWENEVQELTDQMIKAVDTALEAKQAEIM 185 Query: 185 HF 186 Sbjct: 186 QV 187 >gi|325292740|ref|YP_004278604.1| Ribosome recycling factor [Agrobacterium sp. H13-3] gi|325060593|gb|ADY64284.1| Ribosome recycling factor [Agrobacterium sp. H13-3] Length = 185 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 109/182 (59%), Positives = 134/182 (73%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 IDL +IK RM I+ K D+ +LRTGR S ++LD V +EAYGS VPLNQVAN+TV EPR Sbjct: 4 IDLNDIKRRMDGAINAFKSDIASLRTGRASANILDPVTIEAYGSRVPLNQVANITVPEPR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 ML V++WDK MV +V+R I ESNLGLNPIV+GQ LRIP+PE EERR +LVKVAH YAEK Sbjct: 64 MLGVNIWDKSMVNAVDRAIRESNLGLNPIVDGQNLRIPLPELNEERRKSLVKVAHDYAEK 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 SK+++R++RRDGMD LKK+ K G +D +QKITD TI I+ EK+KEIM Sbjct: 124 SKVAIRHVRRDGMDGLKKAEKDGDIGQDESRGQSEKVQKITDDTISEIERLLGEKEKEIM 183 Query: 185 HF 186 Sbjct: 184 QV 185 >gi|114566420|ref|YP_753574.1| ribosome recycling factor [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122318505|sp|Q0AYK1|RRF_SYNWW RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|114337355|gb|ABI68203.1| ribosome recycling factor [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 185 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 85/180 (47%), Positives = 122/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + ++RM TI L+KD+ +LR GR +P+ML+ + V+ YG P+NQ+AN+TV E R+L Sbjct: 6 LSDTEERMKKTIEHLRKDLASLRAGRANPAMLEKIMVDYYGQPTPINQLANITVPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK ++AS+E+ I +S+LG+NP +G V+R+ +P+ TEERR LVKV AE+++ Sbjct: 66 VIQPWDKTIIASIEKAIMKSDLGINPSNDGNVIRLVIPQLTEERRKELVKVLRKRAEEAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD + LK K SED +DIQK TD IK IDS + K+KEIM Sbjct: 126 VAVRNIRRDSNELLKSGEKEKLISEDDNKKGMDDIQKETDRHIKEIDSILQGKEKEIMEV 185 >gi|86146887|ref|ZP_01065206.1| ribosome recycling factor [Vibrio sp. MED222] gi|85835339|gb|EAQ53478.1| ribosome recycling factor [Vibrio sp. MED222] Length = 185 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 112/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK + +RTGR PS+L + VE YG+ PL QVANV + R L Sbjct: 7 KDAQERMVKSVDALKNSLQKIRTGRAHPSLLSGLTVEYYGAPTPLTQVANVIAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DK + VE+ I S+LGLNP+ G V+R+P+P TEERR LVK+ AE ++ Sbjct: 67 ITVFDKTLTPLVEKAIMTSDLGLNPMSAGTVIRVPLPPLTEERRKDLVKIVRGEAEGGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD LK K + SED +++IQK+TD+ +KN+D K+KE+M Sbjct: 127 AIRNIRRDANGDLKALLKDKEISEDEDRKAQDEIQKLTDAAVKNVDEVLAVKEKELMEV 185 >gi|256827506|ref|YP_003151465.1| ribosome recycling factor [Cryptobacterium curtum DSM 15641] gi|256583649|gb|ACU94783.1| ribosome recycling factor [Cryptobacterium curtum DSM 15641] Length = 186 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 68/180 (37%), Positives = 108/180 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + ++RM + L + +RTGR + +LD ++V+ YG P+NQ+A + + ML Sbjct: 7 MLEAEERMEKAVDSLGEAFSNVRTGRANAMVLDRIRVDYYGVPTPINQMAAIKTPDAHML 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK + ++E ++ SNLGL P +G ++R+ P TEERR LVK AYAE+++ Sbjct: 67 VIEPWDKGTLGAIEHALNNSNLGLTPTNDGNLIRLSFPTLTEERRRELVKQCKAYAEEAR 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I+VRN RRD ++K+ K+ ED E DIQK+TDS I ++ F++K+ E+M Sbjct: 127 IAVRNARRDANSAVEKAVKNDGLPEDEQRRSEADIQKLTDSYIAKVEESFKKKEAEVMEI 186 >gi|115352100|ref|YP_773939.1| ribosome recycling factor [Burkholderia ambifaria AMMD] gi|170699876|ref|ZP_02890906.1| ribosome recycling factor [Burkholderia ambifaria IOP40-10] gi|171318103|ref|ZP_02907272.1| ribosome recycling factor [Burkholderia ambifaria MEX-5] gi|172060964|ref|YP_001808616.1| ribosome recycling factor [Burkholderia ambifaria MC40-6] gi|122322843|sp|Q0BE18|RRF_BURCM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238689163|sp|B1YS71|RRF_BURA4 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|115282088|gb|ABI87605.1| ribosome recycling factor [Burkholderia ambifaria AMMD] gi|170135198|gb|EDT03496.1| ribosome recycling factor [Burkholderia ambifaria IOP40-10] gi|171096727|gb|EDT41612.1| ribosome recycling factor [Burkholderia ambifaria MEX-5] gi|171993481|gb|ACB64400.1| ribosome recycling factor [Burkholderia ambifaria MC40-6] Length = 186 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++ +M +I K D+ +RTGR +LD V+V+ YGS VP++QVAN+T+++ R + Sbjct: 8 KGVEQKMQRSIEAFKNDLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVANLTLVDARTIG 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K MVA VE+ I E++LGLNP G ++R+P+P TEERR L KV + E +K+ Sbjct: 68 VQPWEKNMVAKVEKAIREADLGLNPATAGDLIRVPMPALTEERRRELTKVVKSEGETAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD + LKK K + SED +D+QK+TD + +D + K+ EIM Sbjct: 128 AIRNLRRDANEALKKLVKDKEISEDDERRASDDVQKLTDKHVAEVDKLVQSKEAEIMTV 186 >gi|209518711|ref|ZP_03267527.1| ribosome recycling factor [Burkholderia sp. H160] gi|209500825|gb|EEA00865.1| ribosome recycling factor [Burkholderia sp. H160] Length = 186 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 111/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + + +M +I K D+ +RTGR +LD ++ + YGS VP++QVAN+T+++ R + Sbjct: 8 KGAEQKMQRSIDAFKNDLSKIRTGRAHTGLLDHIQCDYYGSPVPISQVANLTLIDARTIG 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K+MV VE+ I ES LGLNP G V+R+P+P TEERR L KV + AE +++ Sbjct: 68 VQPWEKKMVQVVEKAIRESELGLNPATHGDVIRVPMPALTEERRRELTKVVRSEAETARV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD + LKK K + SED +D+QK+TD + ID K+ EIM Sbjct: 128 AVRNLRRDANEQLKKLVKDKEISEDDERRAGDDVQKLTDKFVAEIDKLVTTKEAEIMTV 186 >gi|330836659|ref|YP_004411300.1| ribosome recycling factor [Spirochaeta coccoides DSM 17374] gi|329748562|gb|AEC01918.1| ribosome recycling factor [Spirochaeta coccoides DSM 17374] Length = 188 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 81/180 (45%), Positives = 120/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +D+M +++ L LRTGR + ++ D +KV+ YG PLNQVA++++ E RM+ Sbjct: 9 LSQCEDKMNKSVNTLSASFQGLRTGRATAAIFDKIKVDYYGQETPLNQVASISIPEARMV 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK ++ +E+ I +S LGLNP +G++LRI P TE+RR LVK + A AE+S+ Sbjct: 69 VIQPWDKGLLGPIEKAIQKSELGLNPNNDGKLLRINFPPLTEDRRKDLVKSSKATAEQSR 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD M+ LKK +KSG SED E+ IQK+TDS I ++S +K+KEIM Sbjct: 129 VAIRNIRRDAMEDLKKLQKSGAISEDEQKDGESRIQKLTDSFITKVNSLATDKEKEIMEI 188 >gi|254480101|ref|ZP_05093349.1| ribosome recycling factor [marine gamma proteobacterium HTCC2148] gi|214039663|gb|EEB80322.1| ribosome recycling factor [marine gamma proteobacterium HTCC2148] Length = 185 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 72/179 (40%), Positives = 109/179 (60%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + +RM ++ L + +RTGR PS+LD ++VE YG+ PLNQ+ANV V + R L Sbjct: 7 KEADERMSKSLDALSHNFNKIRTGRAHPSLLDGLRVEYYGAETPLNQMANVNVEDARTLS 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++ WDK M+ ++E+ I +S+LGLNP G+V+RIP+P TEE R ++ A AE +++ Sbjct: 67 LTAWDKTMIPAIEKAIMKSDLGLNPATAGEVIRIPMPMLTEETRKGYIRQARHEAESARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRN RRD LK+ K + SED + IQK+TDS I ++ K+ ++M Sbjct: 127 SVRNARRDANAMLKELEKDKEISEDDERRGHDGIQKVTDSYIAQVEKMLAAKEADLMEI 185 >gi|269138096|ref|YP_003294796.1| ribosome recycling factor [Edwardsiella tarda EIB202] gi|267983756|gb|ACY83585.1| ribosome recycling factor [Edwardsiella tarda EIB202] gi|304558140|gb|ADM40804.1| Ribosome recycling factor [Edwardsiella tarda FL6-60] Length = 185 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM + K ++ +RTGR P++LD ++VE YG+ PL Q+AN+ + R L Sbjct: 7 KDAETRMDKCVESFKGNISKIRTGRAHPNLLDGIQVEYYGTATPLRQLANIVAEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ M ++E+ I S+LGLNP G V+R+P+P TEERR L+K+ + AE ++ Sbjct: 67 LTVFDRSMSGAIEKAILTSDLGLNPASAGTVIRVPLPPLTEERRKDLIKLVRSEAESGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRN+RRD D +K K + SED +++IQKITD IK ID+ +K+KE+M F Sbjct: 127 SVRNVRRDANDKVKALLKDKEISEDEDRKSQDEIQKITDLMIKKIDAALADKEKELMDF 185 >gi|238787232|ref|ZP_04631031.1| Ribosome-recycling factor [Yersinia frederiksenii ATCC 33641] gi|238724494|gb|EEQ16135.1| Ribosome-recycling factor [Yersinia frederiksenii ATCC 33641] Length = 185 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 117/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM + + + +RTGR SPS+LD ++VE YG+ PL Q+AN+ V + R L Sbjct: 7 KDTEVRMEKCLEVFQSHISKIRTGRASPSILDGIQVEYYGTATPLRQLANIIVEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ + A+VE+ I S+LGLNP G V+R+P+P TEERR L+KV A AE+ ++ Sbjct: 67 LTVFDRSLSAAVEKAIMTSDLGLNPSSAGTVIRVPLPALTEERRKDLIKVVRAEAEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RN+RRD + +K K + SED +++IQK+TD+ IK +D+ K+ E+M F Sbjct: 127 SIRNVRRDANEKVKALLKDKEISEDEDRRSQDEIQKLTDAFIKKVDAALAAKETELMDF 185 >gi|83721123|ref|YP_442554.1| ribosome recycling factor [Burkholderia thailandensis E264] gi|167581481|ref|ZP_02374355.1| ribosome recycling factor [Burkholderia thailandensis TXDOH] gi|167619591|ref|ZP_02388222.1| ribosome recycling factor [Burkholderia thailandensis Bt4] gi|257138763|ref|ZP_05587025.1| ribosome recycling factor [Burkholderia thailandensis E264] gi|123536967|sp|Q2SWZ5|RRF_BURTA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|83654948|gb|ABC39011.1| ribosome recycling factor [Burkholderia thailandensis E264] Length = 186 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++ +M +I K D+ +RTGR +LD V+V+ YGS VP++QVAN+T+++ R + Sbjct: 8 KGVEQKMQRSIEAFKNDLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVANLTLVDARTIG 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K MVA VE+ I E++LGLNP G ++R+P+P TEERR L KV E +K+ Sbjct: 68 VQPWEKNMVAKVEKAIREADLGLNPATAGDLIRVPMPALTEERRRELTKVVKGEGETAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD + LKK K + SED +D+QK+TD + ID + K+ EIM Sbjct: 128 AVRNLRRDANEQLKKLVKDKEISEDDERRAGDDVQKLTDKHVAEIDKLVQSKEAEIMTV 186 >gi|90022239|ref|YP_528066.1| ribosome recycling factor [Saccharophagus degradans 2-40] gi|89951839|gb|ABD81854.1| ribosome recycling factor [Saccharophagus degradans 2-40] Length = 187 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 75/187 (40%), Positives = 115/187 (61%), Gaps = 1/187 (0%) Query: 1 MNQVIDLQ-NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVT 59 M + D++ + ++RM I L +RTGR PS+LD V V YGS PL+QVANVT Sbjct: 1 MTMIDDIKSDSEERMSRAIEALGTHFNKIRTGRAHPSILDGVMVSYYGSATPLSQVANVT 60 Query: 60 VLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 VL+ R L +S W+K +V +E+ I +S+LGLNP+ G ++R+P+P TEE R +K A Sbjct: 61 VLDARTLSISPWEKNIVPEIEKAIMKSDLGLNPVTTGDLIRVPMPMLTEETRKGYIKRAR 120 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 A AE +++S+RN+RRD + +K K + SED ++IQ+IT+ + +D K Sbjct: 121 AEAESARVSIRNVRRDALAEVKALVKDKEISEDDERRAADEIQQITNKYVAEVDKALSAK 180 Query: 180 KKEIMHF 186 +K++M Sbjct: 181 EKDLMEI 187 >gi|241890096|ref|ZP_04777394.1| ribosome recycling factor [Gemella haemolysans ATCC 10379] gi|241863718|gb|EER68102.1| ribosome recycling factor [Gemella haemolysans ATCC 10379] Length = 185 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 77/186 (41%), Positives = 123/186 (66%), Gaps = 1/186 (0%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M + I + N+ +RM I+ L++++ ++R G+ S ++LD + V+ YG P+NQVA V+V Sbjct: 1 MPEQI-MNNLNERMEKAIASLRRELASIRAGKASAAVLDRLTVDYYGVPTPINQVAGVSV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EP+MLV+S ++K ++ +E+ I S+LGLNP +G V+RI P TEERR L K+ Sbjct: 60 PEPKMLVISPYEKTLLGDIEKAIQASDLGLNPANDGTVIRIVFPALTEERRKELAKLVGK 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 +E +K++VRN+RRD MD +KK KS + +ED + +DIQK+TD + ID +EK+ Sbjct: 120 ESEGAKVAVRNVRRDAMDAMKKLEKSSQITEDDLKGYSDDIQKVTDKFVAEIDKVTKEKQ 179 Query: 181 KEIMHF 186 +E+M Sbjct: 180 EELMSV 185 >gi|322831591|ref|YP_004211618.1| ribosome recycling factor [Rahnella sp. Y9602] gi|321166792|gb|ADW72491.1| ribosome recycling factor [Rahnella sp. Y9602] Length = 185 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 80/179 (44%), Positives = 111/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM + K + +RTGR SP +LD + VE YGS PL Q+A VTV + R L Sbjct: 7 KDAEIRMEKCVESFKTHISKIRTGRASPGILDGIMVEYYGSATPLRQLAQVTVEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +SV+D+ + A+VE+ I S+LGLNP G +R+P+P TEERR L+KV AE+ ++ Sbjct: 67 ISVFDRSISAAVEKAIMTSDLGLNPSSAGATIRVPLPALTEERRKDLIKVVRGEAEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRN+RRD D K K + SED ++DIQK+TD IK ID EK+ E+M F Sbjct: 127 SVRNVRRDANDKTKALLKDKEISEDEDRRSQDDIQKLTDIFIKKIDVALSEKEAELMEF 185 >gi|134296025|ref|YP_001119760.1| ribosome recycling factor [Burkholderia vietnamiensis G4] gi|166230770|sp|A4JF72|RRF_BURVG RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|134139182|gb|ABO54925.1| ribosome recycling factor [Burkholderia vietnamiensis G4] Length = 186 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++ +M +I K D+ +RTGR +LD V+V+ YGS VP++QVAN+T+++ R + Sbjct: 8 KGVEQKMQRSIEAFKNDLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVANLTLVDARTIG 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K MVA VE+ I E++LGLNP G ++R+P+P TEERR L KV + E +K+ Sbjct: 68 VQPWEKNMVAKVEKAIREADLGLNPATSGDLIRVPMPALTEERRRELTKVVKSEGETAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD + LKK K + SED +D+QK+TD + +D + K+ EIM Sbjct: 128 AIRNLRRDANEALKKLVKDKEISEDDERRASDDVQKLTDKHVAEVDKLVQTKEAEIMTV 186 >gi|206560450|ref|YP_002231214.1| ribosome recycling factor [Burkholderia cenocepacia J2315] gi|238693109|sp|B4ECM8|RRF_BURCJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|198036491|emb|CAR52388.1| ribosome recycling factor [Burkholderia cenocepacia J2315] Length = 186 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++ +M +I K D+ +RTGR +LD V+V+ YGS VP++QVAN+T+++ R + Sbjct: 8 KGVEQKMQRSIEAFKNDLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVANLTLVDARTIG 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K MVA VE+ I E++LGLNP G ++R+P+P TEERR L KV + E +K+ Sbjct: 68 VQPWEKNMVAKVEKAIREADLGLNPATAGDLIRVPMPALTEERRRELTKVVKSEGETAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD + LKK K + SED +D+QK+TD + +D + K+ EIM Sbjct: 128 AIRNLRRDANEALKKLVKDKEISEDDERRASDDVQKLTDKHVAEVDKLVQTKEAEIMTV 186 >gi|254360757|ref|ZP_04976905.1| peptide chain release factor RF4 [Mannheimia haemolytica PHL213] gi|261491693|ref|ZP_05988274.1| peptide chain release factor RF4 [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261494456|ref|ZP_05990942.1| peptide chain release factor RF4 [Mannheimia haemolytica serotype A2 str. OVINE] gi|153091327|gb|EDN73301.1| peptide chain release factor RF4 [Mannheimia haemolytica PHL213] gi|261309840|gb|EEY11057.1| peptide chain release factor RF4 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261312646|gb|EEY13768.1| peptide chain release factor RF4 [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 185 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 79/179 (44%), Positives = 116/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ +DRM ++ LK + +RTGR PS+LD ++VE YGS PL QVANV + R L Sbjct: 7 KDTQDRMEKSLEALKGHIAKIRTGRAQPSLLDGIQVEYYGSATPLRQVANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+V+DK ++++VE+ I S+LGLNP G +R+P+P TEERR L+K+ A E+ K+ Sbjct: 67 VNVFDKSLISAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIVKAEGEQGKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD D +K K + SE+ E DIQKITD+ IK +D K+KE++ F Sbjct: 127 AIRNVRRDANDQIKALLKDKEISENEQHKAEEDIQKITDTFIKKVDEVLAAKEKELLDF 185 >gi|288941761|ref|YP_003444001.1| ribosome recycling factor [Allochromatium vinosum DSM 180] gi|288897133|gb|ADC62969.1| ribosome recycling factor [Allochromatium vinosum DSM 180] Length = 185 Score = 241 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 72/179 (40%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ +RM ++ L ++ +RTGR PS+LD + V YG VP+ QVAN+ + R L+ Sbjct: 7 QDAAERMAKSVESLTHELAKIRTGRAHPSLLDHIMVSYYGQDVPIRQVANINAEDARTLL 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+ W++ MV ++E+ I +S+LGLNP G +R+P+P TEERR L+KVA AE++++ Sbjct: 67 VTPWERNMVQAIEKAIMQSDLGLNPNTAGTAIRVPMPPLTEERRRDLIKVARNEAEQARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD LK+ K SED + +QK+TD +K +D+ EK++++M Sbjct: 127 AVRNIRRDANHDLKELVKDKMISEDDERRGQEIVQKLTDQYVKEVDAVLAEKEQDLMSI 185 >gi|90580974|ref|ZP_01236775.1| ribosome releasing factor [Vibrio angustum S14] gi|90437852|gb|EAS63042.1| ribosome releasing factor [Vibrio angustum S14] Length = 185 Score = 241 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 81/179 (45%), Positives = 119/179 (66%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ + RM ++ L+ ++ +RTGR PS+LD + VE YG++ PLNQVANV + R L Sbjct: 7 QDAQTRMEKSVDALRNQLVKIRTGRAHPSLLDTIHVEYYGANTPLNQVANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+E+ VE+ I S+LGLNP+ G V+R+P+P TEERR LVK+ A AE+ ++ Sbjct: 67 ITVFDRELAPKVEKAIMMSDLGLNPMSAGTVIRVPLPPLTEERRRDLVKIVRAEAEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD +K K + SED +++IQK+TD IKNID+ E K+KE+M Sbjct: 127 AVRNIRRDANATVKGLLKDKEISEDDDRRAQDEIQKLTDDAIKNIDAVLEVKEKELMEV 185 >gi|13470840|ref|NP_102409.1| ribosome recycling factor [Mesorhizobium loti MAFF303099] gi|22001948|sp|Q98MB8|RRF_RHILO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|14021583|dbj|BAB48195.1| ribosome releasing factor [Mesorhizobium loti MAFF303099] Length = 184 Score = 241 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 94/179 (52%), Positives = 128/179 (71%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++K RM I+ K D+ +LRTGR S ++LD ++V+AYG+ +P+NQVANVTV EPRM+ Sbjct: 6 DDLKRRMDGAIAAFKHDLASLRTGRASSNLLDAIQVQAYGTTMPINQVANVTVPEPRMIS 65 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 VS+WDK MV +V+R I ESNLG NPIV+G LRIP+PE E+RR LVK++H YAE +++ Sbjct: 66 VSIWDKSMVGAVDRAIRESNLGFNPIVDGTNLRIPLPELNEQRRKELVKISHGYAENARV 125 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 + R++RRDGMD LKK+ K G SED + +QK+TD TI ID +K+ EIM Sbjct: 126 AARHVRRDGMDFLKKAEKDGVISEDDQRKRSDQVQKLTDETISTIDHLLSDKEAEIMQV 184 >gi|118489544|gb|ABK96574.1| unknown [Populus trichocarpa x Populus deltoides] Length = 286 Score = 241 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 70/179 (39%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + K RM TI ++ + ++RTGR +PSMLD ++VE YG+ V L +A ++ + L+ Sbjct: 108 DDAKGRMEKTIDTMRTNFNSVRTGRANPSMLDKIEVEYYGTPVSLKSIAQISTPDASSLL 167 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +DK + ++E+ I S+LGL P +G+V+R+ +P+ T ERR L K+ AE+ K+ Sbjct: 168 VQPYDKSSLKAIEKAIVSSDLGLTPNNDGEVIRMSIPQLTSERRKELSKMVAKLAEEGKV 227 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD + +K K K SED V L +D+QK+TD +K +D+ F++K+KE++ Sbjct: 228 ALRNIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQKLTDEYMKKLDNIFKQKEKELLKV 286 >gi|152995304|ref|YP_001340139.1| ribosome recycling factor [Marinomonas sp. MWYL1] gi|189044060|sp|A6VUS5|RRF_MARMS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|150836228|gb|ABR70204.1| ribosome recycling factor [Marinomonas sp. MWYL1] Length = 185 Score = 241 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 75/186 (40%), Positives = 112/186 (60%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ L++ +DRM ++ ++ +RTGR PS+LD VKV YGS PL+QVAN+TV Sbjct: 2 INEI--LKDAEDRMSKAVASVESAFKKIRTGRAHPSILDSVKVNYYGSETPLSQVANITV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R L VS W+ +V +E+ I +S+LGLNP G ++RIP+P TEE R K A Sbjct: 60 EDARTLGVSPWENNLVPEIEKAIMKSDLGLNPATNGNLIRIPMPALTEETRKNYFKQAKN 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE +I++RNIRRD LK K + SED ++ +QK+TD + I+ K+ Sbjct: 120 EAENGRIAIRNIRRDANGSLKDLVKEKEISEDDDRRGQDQVQKVTDKYVAQIEERLAAKE 179 Query: 181 KEIMHF 186 K++M Sbjct: 180 KDLMEI 185 >gi|251793255|ref|YP_003007983.1| ribosome recycling factor [Aggregatibacter aphrophilus NJ8700] gi|247534650|gb|ACS97896.1| ribosome recycling factor [Aggregatibacter aphrophilus NJ8700] Length = 185 Score = 241 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ ++RM ++ LK + +RTGR PS+LD ++V+ YGS PL Q+ANV + R L Sbjct: 7 QDAEERMEKSLEALKGHIAKIRTGRAQPSLLDAIQVDYYGSATPLRQLANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+V+D+ ++ +VE+ I S+LGLNP G +R+P+P TEERR L+K+ A E+ K+ Sbjct: 67 VTVFDRSLIQAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIVKAEGEQGKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD D +K K + SE+ E IQK+TD IK +D +K+KE++ F Sbjct: 127 AIRNVRRDANDKIKALLKDKEISENDQHKAEEVIQKLTDGFIKEVDDVLADKEKELLDF 185 >gi|84389789|ref|ZP_00991341.1| ribosome releasing factor [Vibrio splendidus 12B01] gi|84376890|gb|EAP93764.1| ribosome releasing factor [Vibrio splendidus 12B01] Length = 185 Score = 241 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 111/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK + +RTGR PS+L + VE YG+ PL QVANV + R L Sbjct: 7 KDAQERMDKSVDALKNSLQKIRTGRAHPSLLSGLTVEYYGAPTPLAQVANVIAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DK + VE+ I S+LGLNP+ G V+R+P+P TEERR LVK+ AE ++ Sbjct: 67 ITVFDKTLTPLVEKAILTSDLGLNPMSAGTVIRVPLPALTEERRKDLVKIVRGEAEGGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD LK K + SED +++IQK+TD +KN+D K+KE+M Sbjct: 127 AIRNIRRDANGDLKALLKDKEISEDEDRRAQDEIQKLTDIAVKNVDEVLATKEKELMEV 185 >gi|167837038|ref|ZP_02463921.1| ribosome recycling factor [Burkholderia thailandensis MSMB43] Length = 186 Score = 241 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 112/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++ +M +I K D+ +RTGR +LD V+V+ YGS VP++QVAN+T+++ R + Sbjct: 8 KGVEQKMQRSIEAFKNDLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVANLTLVDARTIG 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K MVA VE+ I E++LGLNP G ++R+P+P TEERR L KV E +K+ Sbjct: 68 VQPWEKNMVAKVEKAIREADLGLNPATSGDLIRVPMPPLTEERRRELTKVVKGEGETAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD + LKK K + SED +D+QK+TD + ID + K EIM Sbjct: 128 AVRNLRRDANEQLKKLVKDKEISEDDERRAGDDVQKLTDKHVAEIDKLVQAKDAEIMTV 186 >gi|293390815|ref|ZP_06635149.1| ribosome recycling factor [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951349|gb|EFE01468.1| ribosome recycling factor [Aggregatibacter actinomycetemcomitans D7S-1] Length = 185 Score = 241 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ +DRM ++ LK + +RTGR PS+LD ++V+ YGS PL Q+ANV + R L Sbjct: 7 QDAEDRMEKSLEALKGHIAKIRTGRAQPSLLDAIQVDYYGSATPLRQLANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+V+D+ ++ +VE+ I S+LGLNP G +R+P+P TEERR L+K+ A E+ K+ Sbjct: 67 VTVFDRSLIQAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRELIKIVKAEGEQGKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD D +K K + SE+ E IQK+TDS IK +D +K+KE++ F Sbjct: 127 AIRNVRRDANDKIKALLKDKEISENDQHKAEEVIQKLTDSFIKKVDDVLADKEKELLDF 185 >gi|254179324|ref|ZP_04885923.1| ribosome recycling factor [Burkholderia pseudomallei 1655] gi|184209864|gb|EDU06907.1| ribosome recycling factor [Burkholderia pseudomallei 1655] Length = 186 Score = 241 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++++ +M +I + D+ +RTGR +LD V+V+ YGS VP++QVAN+T+++ R + Sbjct: 8 KSVEQKMQRSIEAFRNDLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVANLTLVDARTIG 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K MVA VE+ I E++LGLNP G ++R+P+P TEERR L KV + E +K+ Sbjct: 68 VQPWEKTMVAKVEKAIREADLGLNPATSGDLIRVPMPPLTEERRRELTKVVKSEGETAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD + LKK K + SED +D+QK+TD + ID + K EIM Sbjct: 128 AVRNLRRDANEQLKKLVKDKEISEDDERRASDDVQKLTDKHVAEIDKLVQAKDAEIMTV 186 >gi|59712566|ref|YP_205342.1| ribosome recycling factor [Vibrio fischeri ES114] gi|71649417|sp|Q5E3E2|RRF_VIBF1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|59480667|gb|AAW86454.1| ribosome recycling factor [Vibrio fischeri ES114] Length = 185 Score = 241 bits (617), Expect = 3e-62, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 116/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK +++ +RTGR PS+L + VE YG+ PLNQVANV + R L Sbjct: 7 KDAQERMEKSVEALKNNLLKIRTGRAHPSLLSGISVEYYGAQTPLNQVANVVAEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DKE+ VE+ I S+LGLNP+ G V+R+P+P TEERR LVK+ AE ++ Sbjct: 67 ITVFDKELAGLVEKAIMMSDLGLNPMSAGTVIRVPLPPLTEERRKDLVKIVRGEAENGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD +K K + SED +++IQK+TD+ +K+ID K+KE+M Sbjct: 127 AIRNIRRDANGDVKALLKEKEISEDDDRRAQDEIQKLTDAAVKSIDEVLAVKEKELMEV 185 >gi|325519183|gb|EGC98648.1| ribosome recycling factor [Burkholderia sp. TJI49] Length = 186 Score = 241 bits (617), Expect = 3e-62, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++ +M +I K D+ +RTGR +LD V+V+ YGS VP++QVAN+T+++ R + Sbjct: 8 KGVEQKMQRSIEAFKNDLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVANLTLVDARTIG 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K MVA VE+ I E++LGLNP G ++R+P+P TEERR L KV E +K+ Sbjct: 68 VQPWEKNMVAKVEKAIREADLGLNPATAGDLIRVPMPALTEERRRELTKVVKGEGETAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD + LKK K + SED +D+QK+TD + ID + K+ EIM Sbjct: 128 AIRNLRRDANEALKKLVKDKEISEDDERRAGDDVQKLTDKHVAEIDKLVQTKEAEIMTV 186 >gi|268315588|ref|YP_003289307.1| ribosome recycling factor [Rhodothermus marinus DSM 4252] gi|262333122|gb|ACY46919.1| ribosome recycling factor [Rhodothermus marinus DSM 4252] Length = 192 Score = 241 bits (617), Expect = 3e-62, Method: Composition-based stats. Identities = 70/180 (38%), Positives = 121/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + ++ M +++ L+ ++ LR GR +P+ML+ V+VE YG+ PL Q+A++T +P +L Sbjct: 13 LDDAREHMEKSLAHLRTELAALRAGRATPAMLEDVRVEYYGTMTPLMQLASITAPQPDLL 72 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V WD+ + ++ER I +NLGLNP +G ++RIP+P +EERR LV+ A AE+++ Sbjct: 73 IVQPWDRSALGAIERAIINANLGLNPSNDGNIIRIPIPPLSEERRKELVRAARIRAEEAR 132 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRR DH+KK+++ ED+ + E ++QK+TD+ I+ ++ E K+ EIM Sbjct: 133 VAIRNIRRHAKDHIKKAKEEEHLPEDLCHAAEEELQKLTDTYIEKVNQLLERKEAEIMEV 192 >gi|39997016|ref|NP_952967.1| ribosome recycling factor [Geobacter sulfurreducens PCA] gi|47116992|sp|P61304|RRF_GEOSL RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|39983904|gb|AAR35294.1| ribosome recycling factor [Geobacter sulfurreducens PCA] gi|298506033|gb|ADI84756.1| ribosome recycling factor [Geobacter sulfurreducens KN400] Length = 185 Score = 241 bits (617), Expect = 3e-62, Method: Composition-based stats. Identities = 68/180 (37%), Positives = 111/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + ++K M ++ L+++ +RTGR + +LD ++V+ YG+ PLNQVA + V EPR + Sbjct: 6 INDMKSHMEKSVESLRREYQKVRTGRANTGLLDEIRVDFYGNPSPLNQVATLAVPEPRTI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + W+ +M+ +E+ I +NLG P +G+++RI +P TEERR +VK AE +K Sbjct: 66 TIQPWETKMIPVIEKAILNANLGFTPSNDGKLIRISLPPLTEERRKEIVKSLKKTAEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIRRD +D LKK K K SED + E ++Q +T+ + +D K+KE+M Sbjct: 126 IAIRNIRRDAIDGLKKLEKDKKISEDDLKRAEKEVQDVTNVYVAKVDEVLAHKEKEVMEV 185 >gi|53719765|ref|YP_108751.1| ribosome recycling factor [Burkholderia pseudomallei K96243] gi|53723736|ref|YP_103192.1| ribosome recycling factor [Burkholderia mallei ATCC 23344] gi|67641707|ref|ZP_00440476.1| ribosome recycling factor [Burkholderia mallei GB8 horse 4] gi|76809671|ref|YP_333972.1| ribosome recycling factor [Burkholderia pseudomallei 1710b] gi|121598549|ref|YP_993369.1| ribosome recycling factor [Burkholderia mallei SAVP1] gi|124384027|ref|YP_001029194.1| ribosome recycling factor [Burkholderia mallei NCTC 10229] gi|126439886|ref|YP_001059466.1| ribosome recycling factor [Burkholderia pseudomallei 668] gi|126449064|ref|YP_001080876.1| ribosome recycling factor [Burkholderia mallei NCTC 10247] gi|126454912|ref|YP_001066749.1| ribosome recycling factor [Burkholderia pseudomallei 1106a] gi|134277912|ref|ZP_01764627.1| ribosome recycling factor [Burkholderia pseudomallei 305] gi|167000553|ref|ZP_02266364.1| ribosome recycling factor [Burkholderia mallei PRL-20] gi|167720163|ref|ZP_02403399.1| ribosome recycling factor [Burkholderia pseudomallei DM98] gi|167739168|ref|ZP_02411942.1| ribosome recycling factor [Burkholderia pseudomallei 14] gi|167816379|ref|ZP_02448059.1| ribosome recycling factor [Burkholderia pseudomallei 91] gi|167824757|ref|ZP_02456228.1| ribosome recycling factor [Burkholderia pseudomallei 9] gi|167846289|ref|ZP_02471797.1| ribosome recycling factor [Burkholderia pseudomallei B7210] gi|167894871|ref|ZP_02482273.1| ribosome recycling factor [Burkholderia pseudomallei 7894] gi|167903260|ref|ZP_02490465.1| ribosome recycling factor [Burkholderia pseudomallei NCTC 13177] gi|167911501|ref|ZP_02498592.1| ribosome recycling factor [Burkholderia pseudomallei 112] gi|167919510|ref|ZP_02506601.1| ribosome recycling factor [Burkholderia pseudomallei BCC215] gi|217421741|ref|ZP_03453245.1| ribosome recycling factor [Burkholderia pseudomallei 576] gi|226200090|ref|ZP_03795636.1| ribosome recycling factor [Burkholderia pseudomallei Pakistan 9] gi|237812805|ref|YP_002897256.1| ribosome recycling factor [Burkholderia pseudomallei MSHR346] gi|242317615|ref|ZP_04816631.1| ribosome recycling factor [Burkholderia pseudomallei 1106b] gi|254177852|ref|ZP_04884507.1| ribosome recycling factor [Burkholderia mallei ATCC 10399] gi|254189290|ref|ZP_04895801.1| ribosome recycling factor [Burkholderia pseudomallei Pasteur 52237] gi|254197752|ref|ZP_04904174.1| ribosome recycling factor [Burkholderia pseudomallei S13] gi|254200144|ref|ZP_04906510.1| ribosome recycling factor [Burkholderia mallei FMH] gi|254206482|ref|ZP_04912834.1| ribosome recycling factor [Burkholderia mallei JHU] gi|254258794|ref|ZP_04949848.1| ribosome recycling factor [Burkholderia pseudomallei 1710a] gi|254297208|ref|ZP_04964661.1| ribosome recycling factor [Burkholderia pseudomallei 406e] gi|254358109|ref|ZP_04974382.1| ribosome recycling factor [Burkholderia mallei 2002721280] gi|60390239|sp|Q62JC7|RRF_BURMA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|60390241|sp|Q63T15|RRF_BURPS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|123598729|sp|Q3JR31|RRF_BURP1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166230765|sp|A3MKU0|RRF_BURM7 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166230766|sp|A2SB75|RRF_BURM9 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166230767|sp|A1V566|RRF_BURMS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166230768|sp|A3NWM8|RRF_BURP0 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166230769|sp|A3NAU5|RRF_BURP6 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|52210179|emb|CAH36158.1| ribosome recycling factor [Burkholderia pseudomallei K96243] gi|52427159|gb|AAU47752.1| ribosome recycling factor [Burkholderia mallei ATCC 23344] gi|76579124|gb|ABA48599.1| ribosome recycling factor [Burkholderia pseudomallei 1710b] gi|121227359|gb|ABM49877.1| ribosome recycling factor [Burkholderia mallei SAVP1] gi|124292047|gb|ABN01316.1| ribosome recycling factor [Burkholderia mallei NCTC 10229] gi|126219379|gb|ABN82885.1| ribosome recycling factor [Burkholderia pseudomallei 668] gi|126228554|gb|ABN92094.1| ribosome recycling factor [Burkholderia pseudomallei 1106a] gi|126241934|gb|ABO05027.1| ribosome recycling factor [Burkholderia mallei NCTC 10247] gi|134251562|gb|EBA51641.1| ribosome recycling factor [Burkholderia pseudomallei 305] gi|147749740|gb|EDK56814.1| ribosome recycling factor [Burkholderia mallei FMH] gi|147753925|gb|EDK60990.1| ribosome recycling factor [Burkholderia mallei JHU] gi|148027236|gb|EDK85257.1| ribosome recycling factor [Burkholderia mallei 2002721280] gi|157806852|gb|EDO84022.1| ribosome recycling factor [Burkholderia pseudomallei 406e] gi|157936969|gb|EDO92639.1| ribosome recycling factor [Burkholderia pseudomallei Pasteur 52237] gi|160698891|gb|EDP88861.1| ribosome recycling factor [Burkholderia mallei ATCC 10399] gi|169654493|gb|EDS87186.1| ribosome recycling factor [Burkholderia pseudomallei S13] gi|217395483|gb|EEC35501.1| ribosome recycling factor [Burkholderia pseudomallei 576] gi|225927774|gb|EEH23815.1| ribosome recycling factor [Burkholderia pseudomallei Pakistan 9] gi|237503136|gb|ACQ95454.1| ribosome recycling factor [Burkholderia pseudomallei MSHR346] gi|238522669|gb|EEP86112.1| ribosome recycling factor [Burkholderia mallei GB8 horse 4] gi|242140854|gb|EES27256.1| ribosome recycling factor [Burkholderia pseudomallei 1106b] gi|243063483|gb|EES45669.1| ribosome recycling factor [Burkholderia mallei PRL-20] gi|254217483|gb|EET06867.1| ribosome recycling factor [Burkholderia pseudomallei 1710a] Length = 186 Score = 241 bits (617), Expect = 3e-62, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++++ +M +I K D+ +RTGR +LD V+V+ YGS VP++QVAN+T+++ R + Sbjct: 8 KSVEQKMQRSIEAFKNDLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVANLTLVDARTIG 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K MVA VE+ I E++LGLNP G ++R+P+P TEERR L KV + E +K+ Sbjct: 68 VQPWEKTMVAKVEKAIREADLGLNPATSGDLIRVPMPPLTEERRRELTKVVKSEGETAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD + LKK K + SED +D+QK+TD + ID + K EIM Sbjct: 128 AVRNLRRDANEQLKKLVKDKEISEDDERRASDDVQKLTDKHVAEIDKLVQAKDAEIMTV 186 >gi|229544425|ref|ZP_04433483.1| ribosome recycling factor [Bacillus coagulans 36D1] gi|229324910|gb|EEN90587.1| ribosome recycling factor [Bacillus coagulans 36D1] Length = 186 Score = 241 bits (617), Expect = 3e-62, Method: Composition-based stats. Identities = 75/185 (40%), Positives = 122/185 (65%), Gaps = 2/185 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 NQVID KD+M I ++++ ++R GR + ++LD + ++ YG+ P+NQ+A+++V Sbjct: 4 NQVID--TAKDKMAKAIQAFQRELGSIRAGRANAALLDKITIDYYGARTPVNQLASISVP 61 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 E R++V+ +DK ++ +ER I +S+LGL P +G V+R+ +P TEERR LVK+ Sbjct: 62 EARLMVIQPYDKTVLGEIERAILKSDLGLTPNNDGSVIRLSIPPLTEERRKELVKLIKKE 121 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 AE++K+++RN+RRD D LKK K+G+ +ED D+QKITD I+ ID + K++ Sbjct: 122 AEEAKVAIRNVRRDANDELKKQEKNGEITEDEHRGFAEDVQKITDQHIQKIDKMTKTKEQ 181 Query: 182 EIMHF 186 EIM Sbjct: 182 EIMEV 186 >gi|190360297|sp|Q0BTL9|RRF_GRABC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor Length = 188 Score = 241 bits (617), Expect = 3e-62, Method: Composition-based stats. Identities = 80/179 (44%), Positives = 118/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q++ RM + L+++ LR GR SP++L+ V+V+AYGS VPL QV N+ V E RML Sbjct: 10 QDLTRRMDGALETLRREFAGLRAGRASPALLEPVRVDAYGSEVPLTQVGNIGVPESRMLT 69 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V VWD+ +V++VE+ I + LGLNP EGQ++R+P+P TEERR L K A YAE +++ Sbjct: 70 VQVWDRSLVSAVEKAIRDCGLGLNPQTEGQLIRVPLPMLTEERRNELAKAAGRYAESTRV 129 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++R +RRDGMD +K K + ED + +++QK+TD IK +D EK+K+I Sbjct: 130 AIRAVRRDGMDQIKGHEKKSEIGEDEAKTWSDEVQKLTDHYIKRVDDALVEKEKDIRQV 188 >gi|89075417|ref|ZP_01161834.1| ribosome releasing factor [Photobacterium sp. SKA34] gi|89048833|gb|EAR54403.1| ribosome releasing factor [Photobacterium sp. SKA34] Length = 185 Score = 241 bits (617), Expect = 3e-62, Method: Composition-based stats. Identities = 81/179 (45%), Positives = 119/179 (66%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ + RM ++ L+ ++ +RTGR PS+LD + VE YG++ PLNQVANV + R L Sbjct: 7 QDAQTRMEKSVDALRNQLVKIRTGRAHPSLLDTIHVEYYGANTPLNQVANVVAEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+E+ VE+ I S+LGLNP+ G V+R+P+P TEERR LVK+ A AE+ ++ Sbjct: 67 ITVFDRELAPKVEKAIMMSDLGLNPMSAGTVIRVPLPPLTEERRRDLVKIVRAEAEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD +K K + SED +++IQK+TD IKNID+ E K+KE+M Sbjct: 127 AVRNIRRDANATVKGLLKDKEISEDDDRRAQDEIQKLTDDAIKNIDAVLEVKEKELMEV 185 >gi|109897577|ref|YP_660832.1| ribosome recycling factor [Pseudoalteromonas atlantica T6c] gi|123361091|sp|Q15WG0|RRF_PSEA6 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|109699858|gb|ABG39778.1| ribosome recycling factor [Pseudoalteromonas atlantica T6c] Length = 185 Score = 241 bits (617), Expect = 3e-62, Method: Composition-based stats. Identities = 75/186 (40%), Positives = 111/186 (59%), Gaps = 1/186 (0%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M I++ + + RM ++ L+ +RTGR PS+LD + V YG+ PL Q+ANV Sbjct: 1 MIDEINV-DARQRMEKSVLALRGQFTKIRTGRAHPSLLDSIMVPYYGAPTPLKQLANVIA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R L ++V+DK +VE+ I +S+LGLNP+ G V+RIP+P TEERR L++V Sbjct: 60 EDSRTLALTVFDKSAAQAVEKAIMQSDLGLNPMSAGTVIRIPMPALTEERRKDLIRVVRN 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE +++VRNIRRD +K+ K + SED E+ IQK+TD +K ID K+ Sbjct: 120 EAEGGRVAVRNIRRDANGDIKELLKEKEISEDDAHRGEDAIQKLTDEFVKQIDDILAAKE 179 Query: 181 KEIMHF 186 E+M Sbjct: 180 TELMEV 185 >gi|77360957|ref|YP_340532.1| ribosome releasing factor [Pseudoalteromonas haloplanktis TAC125] gi|76875868|emb|CAI87089.1| ribosome releasing factor [Pseudoalteromonas haloplanktis TAC125] Length = 173 Score = 241 bits (617), Expect = 3e-62, Method: Composition-based stats. Identities = 73/173 (42%), Positives = 103/173 (59%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M +++ L + +RTGR P++LD + V YGS PLNQVANVT+ + R L + V+DK Sbjct: 1 MQKSVAALGSQLSKIRTGRAHPALLDGIMVSYYGSPTPLNQVANVTIEDSRTLAIGVFDK 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 + +VE+ I S+LGLNP+ G V+R+P+P TEERR L+K+ E +++VRNIR Sbjct: 61 SLAQAVEKAIMASDLGLNPMSAGSVIRVPLPALTEERRKNLIKIVRGEVEGGRVAVRNIR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RD K K SED E IQK+TD IK +D+ K+ E+M Sbjct: 121 RDANGDFKNLLKDKDISEDEARQAEEAIQKMTDKFIKEMDTQLAAKEAELMEI 173 >gi|56964004|ref|YP_175735.1| ribosome recycling factor [Bacillus clausii KSM-K16] gi|60390232|sp|Q5WFT1|RRF_BACSK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|56910247|dbj|BAD64774.1| ribosome recycling factor [Bacillus clausii KSM-K16] Length = 185 Score = 241 bits (617), Expect = 3e-62, Method: Composition-based stats. Identities = 84/179 (46%), Positives = 124/179 (69%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + K RM I L +++ LR GR +P++LD V VE YG+ PLNQ+A+VTV E R+L+ Sbjct: 7 ADAKTRMDKAIDVLSRELAKLRAGRANPALLDRVTVEYYGAQTPLNQLASVTVPEARLLL 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++ +DK VAS+E+ I +S+LGL P +GQV+RI +P TEERR LV++ AE+SK+ Sbjct: 67 ITPYDKTAVASIEKAILKSDLGLTPSNDGQVIRIAIPPLTEERRKDLVRLVSKTAEESKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD D LKK +K G+ +ED + S +DIQK+TD+ + ID ++K++EI+ Sbjct: 127 AVRNIRRDANDELKKLQKDGEMTEDELRSATDDIQKLTDTYVAKIDEKAKQKEQEIIEV 185 >gi|91788554|ref|YP_549506.1| ribosome recycling factor [Polaromonas sp. JS666] gi|123059788|sp|Q12A34|RRF_POLSJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|91697779|gb|ABE44608.1| ribosome recycling factor [Polaromonas sp. JS666] Length = 186 Score = 241 bits (617), Expect = 3e-62, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 QN + +M ++ K + +RTGR +P +LD V V+ YGS VP++QVANV++L+ R + Sbjct: 8 QNAEQKMQQSVDSFKNSLTKIRTGRANPGLLDTVHVDYYGSMVPISQVANVSLLDARTIS 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 VS W+K M A +E+ I +S+LGLNP +G ++R+P+P TEERR L KV A E +K+ Sbjct: 68 VSPWEKGMGAKIEKAIRDSDLGLNPAAQGDLIRVPMPAMTEERRKELTKVVRAEGEHAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD + +KK K SED +++IQK TD I +D K+++IM Sbjct: 128 AVRNLRRDANEGVKKLLKEKLVSEDDERRAQDEIQKFTDRFIAEVDKLVAGKEQDIMAV 186 >gi|332307502|ref|YP_004435353.1| ribosome recycling factor [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174831|gb|AEE24085.1| ribosome recycling factor [Glaciecola agarilytica 4H-3-7+YE-5] Length = 185 Score = 241 bits (616), Expect = 3e-62, Method: Composition-based stats. Identities = 75/186 (40%), Positives = 111/186 (59%), Gaps = 1/186 (0%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M I++ + + RM ++ L+ +RTGR PS+LD + V YG+ PL Q+ANV Sbjct: 1 MIDEINV-DARQRMEKSVVALRGQFTKIRTGRAHPSLLDSIMVPYYGAPTPLKQLANVIA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R L ++V+DK +VE+ I +S+LGLNP+ G V+RIP+P TEERR L++V Sbjct: 60 EDSRTLALTVFDKSAAQAVEKAIMQSDLGLNPMSAGTVIRIPMPALTEERRKDLIRVVRN 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE +++VRNIRRD +K+ K + SED E+ IQK+TD +K ID K+ Sbjct: 120 EAEGGRVAVRNIRRDANGDIKELLKEKEISEDDAHRGEDAIQKLTDEFVKQIDEILAAKE 179 Query: 181 KEIMHF 186 E+M Sbjct: 180 TELMEV 185 >gi|107028804|ref|YP_625899.1| ribosome recycling factor [Burkholderia cenocepacia AU 1054] gi|116690037|ref|YP_835660.1| ribosome recycling factor [Burkholderia cenocepacia HI2424] gi|170733372|ref|YP_001765319.1| ribosome recycling factor [Burkholderia cenocepacia MC0-3] gi|254247886|ref|ZP_04941207.1| Ribosome recycling factor [Burkholderia cenocepacia PC184] gi|123070966|sp|Q1BHH9|RRF_BURCA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166230415|sp|A0K8E0|RRF_BURCH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238688551|sp|B1JUE7|RRF_BURCC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|105897968|gb|ABF80926.1| ribosome recycling factor [Burkholderia cenocepacia AU 1054] gi|116648126|gb|ABK08767.1| ribosome recycling factor [Burkholderia cenocepacia HI2424] gi|124872662|gb|EAY64378.1| Ribosome recycling factor [Burkholderia cenocepacia PC184] gi|169816614|gb|ACA91197.1| ribosome recycling factor [Burkholderia cenocepacia MC0-3] Length = 186 Score = 241 bits (616), Expect = 3e-62, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++ +M +I K D+ +RTGR +LD V+V+ YGS VP++QVAN+T+++ R + Sbjct: 8 KGVEQKMQRSIEAFKNDLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVANLTLVDARTIG 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K MVA VE+ I E++LGLNP G ++R+P+P TEERR L KV + E +K+ Sbjct: 68 VQPWEKNMVAKVEKAIREADLGLNPATTGDLIRVPMPALTEERRRELTKVVKSEGETAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD + LKK K + SED +D+QK+TD + ID + K+ EIM Sbjct: 128 AIRNLRRDANEALKKLVKDKEISEDDERRASDDVQKLTDKHVAEIDKLVQTKEAEIMTV 186 >gi|4768863|gb|AAD29657.1|AF124757_17 ribosome recycling factor [Zymomonas mobilis subsp. mobilis ZM4] Length = 185 Score = 241 bits (616), Expect = 3e-62, Method: Composition-based stats. Identities = 87/180 (48%), Positives = 125/180 (69%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 + +++ R+ + LK D LRTGR S S+LD V V+ YG+++PLNQVA V+V EPR Sbjct: 4 YNKADLERRIKGAVESLKSDFSGLRTGRASTSLLDPVTVDVYGANMPLNQVATVSVPEPR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ V VWDK V V++ I + LGLNP+V+GQ+LR+P+P+ TEERR L K+ Y+EK Sbjct: 64 MITVQVWDKSNVTPVDKAIRSAGLGLNPVVDGQMLRLPIPDLTEERRKELAKLVGQYSEK 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++I+VRN+RRDG D +K+ K + SED EN++QK+TD TI +ID+ K+KEI+ Sbjct: 124 ARIAVRNVRRDGNDQIKQDEKKNEISEDEKKRFENEVQKLTDKTIADIDALAVHKEKEIL 183 >gi|28899089|ref|NP_798694.1| ribosome recycling factor [Vibrio parahaemolyticus RIMD 2210633] gi|153839719|ref|ZP_01992386.1| ribosome recycling factor [Vibrio parahaemolyticus AQ3810] gi|260876829|ref|ZP_05889184.1| ribosome recycling factor [Vibrio parahaemolyticus AN-5034] gi|31076875|sp|Q8GRF5|RRF_VIBPA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|33357058|pdb|1IS1|A Chain A, Crystal Structure Of Ribosome Recycling Factor From Vibrio Parahaemolyticus gi|23491649|dbj|BAC16794.1| ribosome recycling factor [Vibrio parahaemolyticus] gi|28807313|dbj|BAC60578.1| ribosome recycling factor [Vibrio parahaemolyticus RIMD 2210633] gi|149746755|gb|EDM57743.1| ribosome recycling factor [Vibrio parahaemolyticus AQ3810] gi|308091503|gb|EFO41198.1| ribosome recycling factor [Vibrio parahaemolyticus AN-5034] gi|328474374|gb|EGF45179.1| ribosome recycling factor [Vibrio parahaemolyticus 10329] Length = 185 Score = 241 bits (616), Expect = 3e-62, Method: Composition-based stats. Identities = 77/179 (43%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK ++ +RTGR PS+L + VE YG+ PLNQVANV + R L Sbjct: 7 KDAQERMDKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAATPLNQVANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DKE+ VE+ I S+LGLNP+ G ++R+P+P TEERR LVK+ AE ++ Sbjct: 67 ITVFDKELTQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD + LK K + SED + +IQK+TD +K ID K+KE+M Sbjct: 127 AVRNIRRDANNDLKALLKDKEISEDEDRKAQEEIQKLTDVAVKKIDEVLAAKEKELMEV 185 >gi|146297354|ref|YP_001181125.1| ribosome recycling factor [Caldicellulosiruptor saccharolyticus DSM 8903] gi|226703256|sp|A4XLZ9|RRF_CALS8 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|145410930|gb|ABP67934.1| ribosome recycling factor [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 184 Score = 241 bits (616), Expect = 3e-62, Method: Composition-based stats. Identities = 72/180 (40%), Positives = 116/180 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q +++M I LK++ T+R GR +P +LD V V+ YG P+ Q+A++TV E RM+ Sbjct: 5 IQIAEEKMKKAIETLKEEFATVRAGRANPHILDKVMVDYYGVPTPIPQLASITVPEARMI 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ W+ M+ +E+ I +++LG+NP +G+V+R+ PE TEERR LVK AE +K Sbjct: 65 VIQPWEARMLKEIEKAIQKADLGVNPANDGKVIRLIFPELTEERRKELVKQVKKMAEDAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRR+ +D KK +K+ + +ED + E D+QK+ D I+ I+ K+KEIM Sbjct: 125 VAIRNIRREAIDEYKKMKKNNEITEDDLKDAEEDVQKLHDKYIEQIEKLLSAKEKEIMEV 184 >gi|218295073|ref|ZP_03495909.1| ribosome recycling factor [Thermus aquaticus Y51MC23] gi|218244276|gb|EED10801.1| ribosome recycling factor [Thermus aquaticus Y51MC23] Length = 185 Score = 241 bits (616), Expect = 3e-62, Method: Composition-based stats. Identities = 77/178 (43%), Positives = 113/178 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + M ++ L+ ++ LRTGR +P++L +KVE YG+ VPL+Q+A V+ + R LV Sbjct: 8 AETRSHMQKSLEALEHNLSGLRTGRANPALLLHLKVEYYGTPVPLSQIATVSAPDARTLV 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V WD+ + ++E+ I +S+LGLNP +G L I +P TEERR LVK A YAE+ +I Sbjct: 68 VQSWDQNALKAIEKAIRDSDLGLNPSNKGDALYINIPPLTEERRKELVKAARHYAEEGRI 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++RNIRR+ ++ LKK K SED E +IQKITD I +D E+K+ EI+H Sbjct: 128 AIRNIRREALEKLKKLAKELHLSEDDTKRAEAEIQKITDEFIAKVDELLEKKEAEILH 185 >gi|291614111|ref|YP_003524268.1| ribosome recycling factor [Sideroxydans lithotrophicus ES-1] gi|291584223|gb|ADE11881.1| ribosome recycling factor [Sideroxydans lithotrophicus ES-1] Length = 185 Score = 241 bits (616), Expect = 3e-62, Method: Composition-based stats. Identities = 71/179 (39%), Positives = 110/179 (61%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N++ +M ++ LK D+ +RTGR +LD V V+ YGS +NQVAN+T+ + R + Sbjct: 7 KNVEQKMAKSLEALKTDLGKIRTGRAHTGLLDHVMVDYYGSPTAVNQVANITLTDARTIG 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V ++K MV +E+ I +S+LGLNP G ++R+P+P TEERR L+KV + E +K+ Sbjct: 67 VQPYEKNMVGPIEKAIRDSDLGLNPATNGDLIRVPMPMLTEERRRDLIKVVKSEGEDAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD + LKK K ED + D+QK+TD + ID + K+ ++M Sbjct: 127 AVRNIRRDANEQLKKLLKDKAVGEDEERRAQEDVQKLTDRFVAEIDKALQAKETDLMAV 185 >gi|317132574|ref|YP_004091888.1| ribosome recycling factor [Ethanoligenens harbinense YUAN-3] gi|315470553|gb|ADU27157.1| ribosome recycling factor [Ethanoligenens harbinense YUAN-3] Length = 183 Score = 241 bits (616), Expect = 4e-62, Method: Composition-based stats. Identities = 71/179 (39%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ + +M T++ L+ + T+R GR +P++LD V+V+ YG+ P+NQ+A V+V E R L Sbjct: 5 QDYQVKMTKTVAALESEYGTIRAGRANPAILDKVRVDYYGTPTPINQIAAVSVTEARNLT 64 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + WD + ++E+ I+ S+LG+NP +G+++RI P TEERR LVK Y E +K+ Sbjct: 65 IQPWDITQLRAIEKAIYASDLGVNPQNDGKIIRIAFPPLTEERRKELVKTVRKYGEDAKV 124 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++R+IRRD ++ LK+ +K G+ +ED + E +Q TD K ID +K+KEIM Sbjct: 125 AIRSIRRDAIESLKEQKKGGELTEDDLKDAEKKVQDATDRFCKEIDGIAAKKEKEIMEI 183 >gi|24373200|ref|NP_717243.1| ribosome recycling factor [Shewanella oneidensis MR-1] gi|34924965|sp|Q8EGH2|RRF_SHEON RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|24347421|gb|AAN54687.1|AE015609_6 ribosome recycling factor [Shewanella oneidensis MR-1] Length = 185 Score = 241 bits (616), Expect = 4e-62, Method: Composition-based stats. Identities = 77/179 (43%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RMG + K M +RTGR PS+LD ++V YG+ PLNQVANV V + R L Sbjct: 7 KDAQERMGKCVDATKNQMAKVRTGRAHPSLLDSIQVSYYGTMTPLNQVANVGVEDARTLS 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+V+D+ + +VE+ I S+LGLNP+ G LRIP+P TEERR +KV A AE ++ Sbjct: 67 VTVFDRSAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVVRAEAEGGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD + +KK K+ + +ED V E+++QK TD+ IK +D K+ E+M Sbjct: 127 AIRNVRRDAISDVKKLEKAKECTEDDVRRFEDEVQKFTDAHIKKVDEILAAKEIELMEV 185 >gi|282850149|ref|ZP_06259528.1| ribosome recycling factor [Veillonella parvula ATCC 17745] gi|294791801|ref|ZP_06756949.1| ribosome recycling factor [Veillonella sp. 6_1_27] gi|282579642|gb|EFB85046.1| ribosome recycling factor [Veillonella parvula ATCC 17745] gi|294457031|gb|EFG25393.1| ribosome recycling factor [Veillonella sp. 6_1_27] Length = 186 Score = 241 bits (616), Expect = 4e-62, Method: Composition-based stats. Identities = 82/180 (45%), Positives = 122/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 LQ +DRM +I LK + ++RTGR S ++LD V V+ YGS P+NQVAN++V EPRM+ Sbjct: 7 LQQAEDRMNKSIEALKHEFASIRTGRASVALLDKVMVDYYGSPSPINQVANISVPEPRMI 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V++ WDK M+ ++E+ I +S+LGLNP +G +R+ +P+ TEERR +VKV H AE +K Sbjct: 67 VIAPWDKTMIGAIEKAILQSDLGLNPGNDGAQIRLSIPQLTEERRKEIVKVVHKKAEDAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD + LKK K+ +ED + IQK+TD+ +K ID K+K+++ Sbjct: 127 VAVRNIRRDVNEALKKEEKAKTITEDDAKDGLDQIQKLTDAKVKQIDELKAVKEKDVLEV 186 >gi|83589883|ref|YP_429892.1| ribosome recycling factor [Moorella thermoacetica ATCC 39073] gi|123524654|sp|Q2RJP0|RRF_MOOTA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|83572797|gb|ABC19349.1| ribosome recycling factor [Moorella thermoacetica ATCC 39073] Length = 185 Score = 241 bits (616), Expect = 4e-62, Method: Composition-based stats. Identities = 75/180 (41%), Positives = 116/180 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 LQ +++M + L++++ +LR GR +P++L+ V V YG+ P+NQ+A V+ E R+L Sbjct: 6 LQEAEEKMKKAVEGLRRELASLRAGRANPALLEKVLVSYYGTPTPVNQLATVSSPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WD+ ++ +E+ I +S+LGL P +G V+RI +P+ TEERR LVKVA AE+ + Sbjct: 66 VIQPWDRNILPEIEKAILKSDLGLTPSSDGTVIRITIPQLTEERRSELVKVARKKAEEFR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 + VRN RR+ D LK S K+ +ASED V + +QK TD+ I+ ID K+ EIM Sbjct: 126 VMVRNARREANDKLKASEKNKEASEDEVKRAQEKVQKTTDNYIQIIDKILATKEAEIMEV 185 >gi|254252062|ref|ZP_04945380.1| Ribosome recycling factor [Burkholderia dolosa AUO158] gi|124894671|gb|EAY68551.1| Ribosome recycling factor [Burkholderia dolosa AUO158] Length = 186 Score = 241 bits (616), Expect = 4e-62, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++ +M +I K D+ +RTGR +LD V+V+ YGS VP++QVAN+T+++ R + Sbjct: 8 KGVEQKMQRSIEAFKNDLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVANLTLVDARTIG 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K MVA VE+ I E++LGLNP G V+R+P+P TEERR L KV + E +K+ Sbjct: 68 VQPWEKNMVAKVEKAIREADLGLNPATTGDVIRVPMPALTEERRRELTKVVKSEGETAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD + LKK K + SED +D+QK+TD + ID + K+ EIM Sbjct: 128 AIRNLRRDANEALKKLVKDKEISEDDERRAGDDVQKLTDKHVAEIDKLVQTKEAEIMTV 186 >gi|238918776|ref|YP_002932290.1| ribosome recycling factor, [Edwardsiella ictaluri 93-146] gi|259494541|sp|C5BHB9|RRF_EDWI9 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238868344|gb|ACR68055.1| ribosome recycling factor, putative [Edwardsiella ictaluri 93-146] Length = 185 Score = 241 bits (616), Expect = 4e-62, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM + K ++ +RTGR P++LD ++VE YG+ PL Q+AN+ + R L Sbjct: 7 KDAETRMDKCVESFKGNISKIRTGRAHPNLLDGIQVEYYGTATPLRQLANIVAEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ M ++E+ I S+LGLNP G V+R+P+P TEERR L+K+ + AE ++ Sbjct: 67 LTVFDRSMSGAIEKAILTSDLGLNPASAGTVIRVPLPPLTEERRKDLIKLVRSEAESGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRN+RRD D +K K + SED + +IQKITD IK ID+ +K+KE+M F Sbjct: 127 SVRNVRRDANDKVKALLKDKEISEDEDRKSQEEIQKITDLMIKKIDAALADKEKELMDF 185 >gi|258541747|ref|YP_003187180.1| ribosome recycling factor [Acetobacter pasteurianus IFO 3283-01] gi|329114467|ref|ZP_08243229.1| Ribosome-recycling factor [Acetobacter pomorum DM001] gi|256632825|dbj|BAH98800.1| ribosome Recycling Factor (RRF) [Acetobacter pasteurianus IFO 3283-01] gi|256635882|dbj|BAI01851.1| ribosome Recycling Factor (RRF) [Acetobacter pasteurianus IFO 3283-03] gi|256638937|dbj|BAI04899.1| ribosome Recycling Factor (RRF) [Acetobacter pasteurianus IFO 3283-07] gi|256641991|dbj|BAI07946.1| ribosome Recycling Factor (RRF) [Acetobacter pasteurianus IFO 3283-22] gi|256645046|dbj|BAI10994.1| ribosome Recycling Factor (RRF) [Acetobacter pasteurianus IFO 3283-26] gi|256648101|dbj|BAI14042.1| ribosome Recycling Factor (RRF) [Acetobacter pasteurianus IFO 3283-32] gi|256651154|dbj|BAI17088.1| ribosome Recycling Factor (RRF) [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654145|dbj|BAI20072.1| ribosome Recycling Factor (RRF) [Acetobacter pasteurianus IFO 3283-12] gi|326696543|gb|EGE48222.1| Ribosome-recycling factor [Acetobacter pomorum DM001] Length = 187 Score = 241 bits (616), Expect = 4e-62, Method: Composition-based stats. Identities = 86/180 (47%), Positives = 117/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++K RM + L++D LR+GR SP++L+ V+VEAYG VPL QV ++ V E RM+ Sbjct: 8 LDDLKRRMDGALDSLRRDFSGLRSGRASPALLEPVRVEAYGGEVPLTQVGSIAVPEARMI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V VWD+ + +VER I +S LGLNP EGQ +R+P+P+ TEERR L K A YAE K Sbjct: 68 TVQVWDRALAGAVERAIRDSGLGLNPAGEGQTIRVPIPQLTEERRNELAKAAARYAEGGK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VR +RRDGMD K K G+ S+D V + + IQK+TD +K ID +K KEI Sbjct: 128 VAVRGVRRDGMDKAKGFEKKGEISQDDVKTWSDAIQKLTDQYVKKIDDMLADKDKEIKQV 187 >gi|46202355|ref|ZP_00053346.2| COG0233: Ribosome recycling factor [Magnetospirillum magnetotacticum MS-1] Length = 173 Score = 241 bits (616), Expect = 4e-62, Method: Composition-based stats. Identities = 90/173 (52%), Positives = 114/173 (65%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M + LKK+ LR+GR S ++LD V VEAYG +PL+Q V V EPRML V VWDK Sbjct: 1 MDSAVEVLKKEFSGLRSGRASVNLLDPVVVEAYGQTMPLSQCGTVGVPEPRMLTVQVWDK 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 V +VE+ I + LGLNP +GQ++R+P+P EERR L KVA YAE+++ISVRN+R Sbjct: 61 SQVKAVEKAIANAGLGLNPQADGQMIRVPIPALNEERRKELQKVAGKYAEQARISVRNVR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RDGMD LKK K G SED + E ++Q +TD TIK ID K+KEIM Sbjct: 121 RDGMDSLKKMEKDGHISEDEIKKHEKEVQTVTDDTIKKIDEVLGHKEKEIMQV 173 >gi|237745598|ref|ZP_04576078.1| ribosome recycling factor [Oxalobacter formigenes HOxBLS] gi|229376949|gb|EEO27040.1| ribosome recycling factor [Oxalobacter formigenes HOxBLS] Length = 186 Score = 241 bits (615), Expect = 4e-62, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N + +M ++ LK D+ +RTGR +LD ++V+ YGS ++QVANVT+L+ R + Sbjct: 8 KNAEQKMNKSVDSLKADLAKVRTGRAHTGILDHIQVDYYGSPTQISQVANVTLLDARTIS 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K+MV+ +E+ I +S+LGLNP G ++R+P P TEERR +VK+ E +K+ Sbjct: 68 VQPWEKKMVSVIEKAIRDSDLGLNPSSVGDIIRVPTPPLTEERRKEMVKLVKTEGEDAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD + LKK K SED ++DIQK+TD ++ ID EK+KE+M Sbjct: 128 AVRNIRRDANEALKKMVKDKACSEDEERRAQDDIQKLTDRFVQQIDKLLTEKEKEVMTV 186 >gi|78066795|ref|YP_369564.1| ribosome recycling factor [Burkholderia sp. 383] gi|123568180|sp|Q39F46|RRF_BURS3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|77967540|gb|ABB08920.1| ribosome recycling factor [Burkholderia sp. 383] Length = 186 Score = 241 bits (615), Expect = 4e-62, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++ +M +I K D+ +RTGR MLD V+V+ YGS VP++QVAN+T+++ R + Sbjct: 8 KGVEQKMQRSIDAFKSDLAKIRTGRAHTGMLDHVQVDYYGSMVPISQVANMTLVDARTIG 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K MVA VE+ I E++LGLNP G +R+P+P TEERR L KV + E +K+ Sbjct: 68 VQPWEKPMVAKVEKAIREADLGLNPATSGDQIRVPMPALTEERRRELTKVVKSEGETAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD + LKK K + SED +D+QK+TD + ID + K+ EIM Sbjct: 128 AIRNLRRDANEALKKLVKDKEISEDDERRASDDVQKLTDKHVAEIDKLVQSKEAEIMTV 186 >gi|269837765|ref|YP_003319993.1| ribosome recycling factor [Sphaerobacter thermophilus DSM 20745] gi|269787028|gb|ACZ39171.1| ribosome recycling factor [Sphaerobacter thermophilus DSM 20745] Length = 185 Score = 241 bits (615), Expect = 4e-62, Method: Composition-based stats. Identities = 69/180 (38%), Positives = 115/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + + RM T+ L++++ +RTGR SP +++ ++V+ YG+ PLNQVA ++ EPR+L Sbjct: 6 LADAEGRMTKTLDNLQRELAGIRTGRASPGLIERLEVDYYGTPTPLNQVAGISAPEPRLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV WD+ ++++E+ I S+LGLNP +GQV+RI +P TEERR ALV+V E+S+ Sbjct: 66 VVQPWDRSAMSAIEKAIRSSDLGLNPTNDGQVIRIAIPPLTEERRKALVRVVRQKVEESR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD + +K+ + ED E +Q++T+ I D + K+ E++ Sbjct: 126 VAIRNIRRDALAQVKEMLQEKLIGEDDERRAEQQVQELTNRYINEADKIGKNKEAEVLEV 185 >gi|85059918|ref|YP_455620.1| ribosome recycling factor [Sodalis glossinidius str. 'morsitans'] gi|123518938|sp|Q2NRL0|RRF_SODGM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|84780438|dbj|BAE75215.1| ribosome recycling factor [Sodalis glossinidius str. 'morsitans'] Length = 185 Score = 241 bits (615), Expect = 4e-62, Method: Composition-based stats. Identities = 73/179 (40%), Positives = 112/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM + K + +RTGR SPS+LD ++++ YG PL Q+AN+ + R L Sbjct: 7 KDAEIRMEKCVDAFKSHISKVRTGRASPSLLDGIQIDYYGLLTPLRQLANIIAEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ + +VE+ I S+LGLNP G V+R+P+P TEERR L+KV A AE+ ++ Sbjct: 67 ITVFDRTLAPAVEKAIMASDLGLNPSSAGTVIRVPLPPLTEERRRDLIKVVRAEAEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRN+RRD D +K K ED +++IQK+TD+ IK +DS EK+ E+M Sbjct: 127 SVRNVRRDANDKVKALLKDKTIGEDEDRRSQDEIQKLTDAWIKKLDSALAEKEAELMEI 185 >gi|295689595|ref|YP_003593288.1| ribosome recycling factor [Caulobacter segnis ATCC 21756] gi|295431498|gb|ADG10670.1| ribosome recycling factor [Caulobacter segnis ATCC 21756] Length = 188 Score = 241 bits (615), Expect = 4e-62, Method: Composition-based stats. Identities = 97/180 (53%), Positives = 125/180 (69%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +DRM ++ LK++ +LRTGR S S+LD V VEAYGS PLN VA+V+V EPR + Sbjct: 9 LSRYRDRMDKAVAALKEEFGSLRTGRASASLLDQVMVEAYGSTTPLNAVASVSVPEPRQI 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VSVWD+ +V SVE+ I S LGLNP+VEGQ LRIP+P TEERR L K+A YAE+ K Sbjct: 69 NVSVWDRGVVVSVEKAIRASGLGLNPVVEGQNLRIPIPPLTEERRRDLQKIAGKYAEQQK 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I+VRN+RRD D LKK+ K G +ED +E ++QK+TD IK ID + K++EIM Sbjct: 129 IAVRNVRRDANDDLKKAEKDGAIAEDERKKMETEVQKLTDEAIKRIDEALKTKEQEIMQV 188 >gi|254785177|ref|YP_003072605.1| ribosome recycling factor [Teredinibacter turnerae T7901] gi|259494556|sp|C5BQF9|RRF_TERTT RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|237684972|gb|ACR12236.1| ribosome recycling factor [Teredinibacter turnerae T7901] Length = 185 Score = 241 bits (615), Expect = 4e-62, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 116/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM T+ L + +RTGR PS+LD V V YGS PL+QVAN++VL+ R L Sbjct: 7 KDAEARMKKTVEALGINFNKIRTGRAHPSILDGVSVSYYGSDTPLSQVANISVLDARTLS 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S W+K MV +E+ I +S+LGLNP+ G+++R+P+P TEE R +K A AE++++ Sbjct: 67 LSPWEKSMVPEIEKAIMKSDLGLNPVTTGELIRVPMPALTEESRKGYIKQAKTEAEQARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RN+RRD + +K+ K + SED ++DIQKITD + +D+ K+K++M Sbjct: 127 SIRNVRRDVLADVKELLKEKEISEDDDRRAQDDIQKITDKYVAEVDAALAVKEKDLMEI 185 >gi|197335484|ref|YP_002156787.1| ribosome recycling factor [Vibrio fischeri MJ11] gi|226749945|sp|B5F9X3|RRF_VIBFM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|197316974|gb|ACH66421.1| ribosome recycling factor [Vibrio fischeri MJ11] Length = 185 Score = 241 bits (615), Expect = 4e-62, Method: Composition-based stats. Identities = 77/179 (43%), Positives = 116/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK +++ +RTGR PS+L + VE YG+ PLNQVANV + R L Sbjct: 7 KDAQERMEKSVEALKNNLLKVRTGRAHPSLLSGISVEYYGAKTPLNQVANVVAEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DKE+ VE+ I S+LGLNP+ G V+R+P+P TEERR LVK+ AE ++ Sbjct: 67 ITVFDKELAGLVEKAIMMSDLGLNPMSAGTVIRVPLPPLTEERRKDLVKIVRGEAENGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD +K K + SED +++IQK+TD+ +K+ID K+KE+M Sbjct: 127 AVRNIRRDANGDVKALLKEKEISEDDDRRAQDEIQKLTDAAVKSIDEVLAVKEKELMEV 185 >gi|315127161|ref|YP_004069164.1| ribosome releasing factor [Pseudoalteromonas sp. SM9913] gi|315015675|gb|ADT69013.1| ribosome releasing factor [Pseudoalteromonas sp. SM9913] Length = 173 Score = 241 bits (615), Expect = 4e-62, Method: Composition-based stats. Identities = 72/173 (41%), Positives = 105/173 (60%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M +++ L + +RTGR P++LD + V YG+ PLNQVANVT+ + R L + V+DK Sbjct: 1 MQKSVAALGSQLSKIRTGRAHPAILDGIMVSYYGAPTPLNQVANVTIEDSRTLAIGVFDK 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 + +VE+ I S+LGLNP+ G V+R+P+P TEERR L+K+ E ++++RNIR Sbjct: 61 SLAQAVEKAIMASDLGLNPMSAGTVIRVPLPPLTEERRKDLIKIVRGEVEGGRVAIRNIR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RD +K K SED E+ IQKITD IK +D+ K+ E+M Sbjct: 121 RDANGDIKNLLKDKDISEDEARQAEDAIQKITDKFIKEMDTQLTAKEAELMEI 173 >gi|114327599|ref|YP_744756.1| ribosome recycling factor [Granulibacter bethesdensis CGDNIH1] gi|114315773|gb|ABI61833.1| ribosome recycling factor (RRF) [Granulibacter bethesdensis CGDNIH1] Length = 202 Score = 241 bits (615), Expect = 5e-62, Method: Composition-based stats. Identities = 80/179 (44%), Positives = 118/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q++ RM + L+++ LR GR SP++L+ V+V+AYGS VPL QV N+ V E RML Sbjct: 24 QDLTRRMDGALETLRREFAGLRAGRASPALLEPVRVDAYGSEVPLTQVGNIGVPESRMLT 83 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V VWD+ +V++VE+ I + LGLNP EGQ++R+P+P TEERR L K A YAE +++ Sbjct: 84 VQVWDRSLVSAVEKAIRDCGLGLNPQTEGQLIRVPLPMLTEERRNELAKAAGRYAESTRV 143 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++R +RRDGMD +K K + ED + +++QK+TD IK +D EK+K+I Sbjct: 144 AIRAVRRDGMDQIKGHEKKSEIGEDEAKTWSDEVQKLTDHYIKRVDDALVEKEKDIRQV 202 >gi|307718990|ref|YP_003874522.1| ribosome recycling factor [Spirochaeta thermophila DSM 6192] gi|306532715|gb|ADN02249.1| ribosome recycling factor [Spirochaeta thermophila DSM 6192] Length = 184 Score = 241 bits (615), Expect = 5e-62, Method: Composition-based stats. Identities = 76/177 (42%), Positives = 117/177 (66%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 + + RM ++ LK + T+RTGR +P++ + + V YG PLNQVA+++ EPR++V+ Sbjct: 7 DAETRMKKSVHALKDQLATIRTGRATPALFEKITVNYYGQQTPLNQVASISAPEPRLVVI 66 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 WDK ++ +E+ I S+L LNP+ +G+VLRI +P TEERR +K+A AE+S+++ Sbjct: 67 QPWDKSVLQEIEKAIQSSDLSLNPVNDGKVLRINIPPLTEERRKEYIKLAKNVAEQSRVA 126 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +RNIRRD + LKK+ K G+ SED E +IQK+T I I++ E K+KEIM Sbjct: 127 IRNIRRDANEALKKAEKEGQLSEDERKRGEEEIQKLTQKYIDEINNLLEAKEKEIME 183 >gi|167563185|ref|ZP_02356101.1| ribosome recycling factor [Burkholderia oklahomensis EO147] gi|167570368|ref|ZP_02363242.1| ribosome recycling factor [Burkholderia oklahomensis C6786] Length = 186 Score = 241 bits (615), Expect = 5e-62, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++ +M +I K D+ +RTGR +LD V+V+ YGS VP++QVAN+T+++ R + Sbjct: 8 KGVEQKMQRSIEAFKNDLAKIRTGRAHAGLLDHVQVDYYGSMVPISQVANLTLVDARTIG 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K MVA VE+ I E++LGLNP G ++R+P+P TEERR L KV + E +K+ Sbjct: 68 VQPWEKNMVAKVEKAIREADLGLNPATAGDLIRVPMPALTEERRRELTKVVKSEGETAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD + LKK K + SED +D+QK+TD + ID + K+ EIM Sbjct: 128 AIRNLRRDANEALKKLVKDKEISEDDERRAGDDVQKLTDKHVAEIDKLVQSKEAEIMTV 186 >gi|85712041|ref|ZP_01043095.1| Ribosome recycling factor [Idiomarina baltica OS145] gi|85694227|gb|EAQ32171.1| Ribosome recycling factor [Idiomarina baltica OS145] Length = 185 Score = 241 bits (615), Expect = 5e-62, Method: Composition-based stats. Identities = 80/186 (43%), Positives = 121/186 (65%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N +I ++ K+RM ++ L+ M +RTGR PS+LD V V YG PL Q+AN+T Sbjct: 2 INDII--KDAKERMEKSVESLRSQMSKVRTGRAHPSILDSVMVNYYGVDTPLKQLANITT 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R L ++V+DK +VE+ I S+LGLNP G V+RIP+P TEERR LVK+ A Sbjct: 60 EDSRTLALTVFDKSSAQAVEKAILTSDLGLNPASAGAVIRIPLPPLTEERRRDLVKIVRA 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE+++++VRNIRRD + LK+ K + +ED S E+D+QK+TD+ +K ID + K+ Sbjct: 120 EAEQARVAVRNIRRDANNDLKELLKEKEITEDEEHSAEDDVQKLTDTYVKKIDESLKAKE 179 Query: 181 KEIMHF 186 +++M Sbjct: 180 QDLMEV 185 >gi|255656125|ref|ZP_05401534.1| ribosome recycling factor [Clostridium difficile QCD-23m63] gi|296450443|ref|ZP_06892199.1| ribosome recycling factor [Clostridium difficile NAP08] gi|296879434|ref|ZP_06903428.1| ribosome recycling factor [Clostridium difficile NAP07] gi|296260704|gb|EFH07543.1| ribosome recycling factor [Clostridium difficile NAP08] gi|296429580|gb|EFH15433.1| ribosome recycling factor [Clostridium difficile NAP07] Length = 185 Score = 241 bits (615), Expect = 5e-62, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 117/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++++M TI LK + T+R GR + MLD ++V+ YG+ P+NQ+ ++V EPR+L+ Sbjct: 7 KQLEEKMNGTIDALKFEFGTIRAGRANAQMLDKIRVDYYGTPTPINQIGAISVPEPRILM 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S WDK + +E+ I S+LGLNP +G+V+R+ VP TEERR L K A AE K+ Sbjct: 67 ISPWDKSAMHEIEKAIANSDLGLNPSNDGEVIRLSVPALTEERRKELAKKASKAAEDFKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +RN RRD + +KK K G+ +ED + ++++QK+TD IK ID+ +K+K+IM Sbjct: 127 RIRNERRDANEKIKKMEKGGELTEDELKKAQDEVQKMTDKFIKEIDTLLSKKEKDIMEV 185 >gi|134299822|ref|YP_001113318.1| ribosome recycling factor [Desulfotomaculum reducens MI-1] gi|172044307|sp|A4J5Z0|RRF_DESRM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|134052522|gb|ABO50493.1| ribosome recycling factor [Desulfotomaculum reducens MI-1] Length = 184 Score = 240 bits (614), Expect = 5e-62, Method: Composition-based stats. Identities = 72/180 (40%), Positives = 118/180 (65%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + + +D M ++ ++++ +LR GR +PS+LD V V YG+ PLNQ+AN++V E R+L Sbjct: 6 ISSAEDHMKKSVDVVRREFASLRAGRATPSILDKVTVSYYGTPTPLNQLANISVPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK ++ VE+ I +S++G+ P +G V+R+ +P+ T+ERR LVKV AE+ + Sbjct: 66 VIQPWDKSVIPEVEKAILKSDVGITPSSDGTVIRLIIPQLTQERRTELVKVIKKKAEEGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD D +K +K G ED ++++QK+TD +K ID + K++EIM Sbjct: 126 VAVRNIRRDTNDSIKAKQKDG-IPEDEAKRGQDELQKLTDKYVKEIDEMVKAKEQEIMQV 184 >gi|254464577|ref|ZP_05077988.1| ribosome recycling factor [Rhodobacterales bacterium Y4I] gi|206685485|gb|EDZ45967.1| ribosome recycling factor [Rhodobacterales bacterium Y4I] Length = 187 Score = 240 bits (614), Expect = 5e-62, Method: Composition-based stats. Identities = 86/182 (47%), Positives = 123/182 (67%), Gaps = 1/182 (0%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 +D ++K RM ++ L+ + +LRTGR S SML+ V V+AYGS P+NQV V V EPR Sbjct: 7 LDTDDLKRRMDGAMANLRTEFASLRTGRASASMLEPVMVDAYGSMTPINQVGTVNVPEPR 66 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ ++VWDK +V VE+ I ES LG+NP + G ++ +P+PE EERR L KVA YAE Sbjct: 67 MVTINVWDKGLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRRELGKVAGHYAEH 126 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++S+RN+RRDGMD +KK++ G SED E ++Q++TD IK++D E K+ EIM Sbjct: 127 ARVSIRNVRRDGMDQIKKAKADG-MSEDDQKFWEAEVQELTDKMIKHVDEALETKQAEIM 185 Query: 185 HF 186 Sbjct: 186 QV 187 >gi|315186476|gb|EFU20236.1| ribosome recycling factor [Spirochaeta thermophila DSM 6578] Length = 184 Score = 240 bits (614), Expect = 5e-62, Method: Composition-based stats. Identities = 76/177 (42%), Positives = 117/177 (66%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 + + RM ++ LK + T+RTGR +P++ + + V YG PLNQVA+++ EPR++V+ Sbjct: 7 DAETRMKKSVHALKDQLATIRTGRATPALFEKITVNYYGQQTPLNQVASISAPEPRLVVI 66 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 WDK ++ +E+ I S+L LNP+ +G+VLRI +P TEERR +K+A AE+S+++ Sbjct: 67 QPWDKSVLQEIEKAIQSSDLSLNPVNDGKVLRINIPPLTEERRKEYIKLAKNVAEQSRVA 126 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +RNIRRD + LKK+ K G+ SED E +IQK+T I I++ E K+KEIM Sbjct: 127 IRNIRRDANEALKKAEKEGRLSEDERKRGEEEIQKLTQKYIDEINNLLEAKEKEIME 183 >gi|238026905|ref|YP_002911136.1| ribosome recycling factor [Burkholderia glumae BGR1] gi|237876099|gb|ACR28432.1| Ribosome releasing factor [Burkholderia glumae BGR1] Length = 186 Score = 240 bits (614), Expect = 5e-62, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++ +M +I K D+ +RTGR +LD V+V+ YGS VP++QVAN+T+++ R + Sbjct: 8 KGVEQKMQRSIEAFKNDLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVANLTLVDARTIG 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K MVA VE+ I ES+LGLNP G ++R+P+P TEERR L KV + E +K+ Sbjct: 68 VQPWEKPMVAKVEKAIRESDLGLNPATSGDMIRVPMPALTEERRRELTKVVKSEGETAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD + LKK K + SED +++QK+TD + ID + K EIM Sbjct: 128 AVRNLRRDANEQLKKLVKDKEISEDDERRASDEVQKLTDKHVAEIDKLVQAKDAEIMTV 186 >gi|52425984|ref|YP_089121.1| ribosome recycling factor [Mannheimia succiniciproducens MBEL55E] gi|60390244|sp|Q65R74|RRF_MANSM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|52308036|gb|AAU38536.1| Frr protein [Mannheimia succiniciproducens MBEL55E] Length = 185 Score = 240 bits (614), Expect = 5e-62, Method: Composition-based stats. Identities = 77/179 (43%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ +DRM ++ LK + +RTGR PS+LD ++V+ YGS PL Q+ANV + R L Sbjct: 7 KDTQDRMEKSLEALKGHIAKIRTGRAQPSLLDAIQVDYYGSATPLRQLANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+V+D+ ++ +VE+ I S+LGLNP G +R+P+P TEERR L+K+ E+ K+ Sbjct: 67 VTVFDRSLIQAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIVKGEGEQGKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD D +K K + SE+ E +IQKITDS IK +D EK+KE+M F Sbjct: 127 AIRNVRRDANDKIKALLKDKEISENDQRKAEEEIQKITDSYIKKVDEVLAEKEKELMDF 185 >gi|296115044|ref|ZP_06833686.1| ribosome recycling factor [Gluconacetobacter hansenii ATCC 23769] gi|295978381|gb|EFG85117.1| ribosome recycling factor [Gluconacetobacter hansenii ATCC 23769] Length = 188 Score = 240 bits (614), Expect = 6e-62, Method: Composition-based stats. Identities = 84/180 (46%), Positives = 118/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++ RM I L++D LR+GR SP++L+ V+VEAYG VPL QV ++ V E RML Sbjct: 9 LADVTRRMDGAIESLRRDFAGLRSGRASPALLEPVRVEAYGGEVPLTQVGSIAVPEARML 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V VWD+ +V +VER I +S LGLNP +GQ +R+P+P+ TEERR L + A YAE +K Sbjct: 69 TVQVWDRSLVGAVERAIRDSGLGLNPAADGQTVRVPIPQLTEERRNELARAAGKYAENAK 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I+VR +RRDGM+ + K G+ S+D V + IQK+TD +K +D EK++EI Sbjct: 129 IAVRGVRRDGMEQTRGQEKKGEISQDDVKVWSDAIQKLTDQYVKRVDELLAEKEREIKQV 188 >gi|114777897|ref|ZP_01452811.1| Ribosome recycling factor [Mariprofundus ferrooxydans PV-1] gi|114551684|gb|EAU54236.1| Ribosome recycling factor [Mariprofundus ferrooxydans PV-1] Length = 181 Score = 240 bits (614), Expect = 6e-62, Method: Composition-based stats. Identities = 77/180 (42%), Positives = 119/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +++RM ++ L+ ++ T+RTGR + ++LD V V YGS VP NQV N++V EPR+L Sbjct: 2 FDALEERMKKSVVALRSELATIRTGRANAALLDQVTVSYYGSEVPFNQVGNISVPEPRIL 61 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ W+K ++ +E+ I +S+LGLNP +G+V+RI +PE TE+RR LVK A EK++ Sbjct: 62 MITPWEKSIIGDIEKAILKSDLGLNPTSDGEVVRIMLPELTEDRRKELVKKARTIGEKAR 121 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+RNIRRD D +KK K ED L++ IQKITD I +D E K+++I+ Sbjct: 122 VSIRNIRRDANDEVKKQAKDDNLPEDESKRLQDRIQKITDKYIAEVDQVIEHKEQDILTV 181 >gi|218710315|ref|YP_002417936.1| ribosome recycling factor [Vibrio splendidus LGP32] gi|218323334|emb|CAV19511.1| Ribosome recycling factor [Vibrio splendidus LGP32] Length = 195 Score = 240 bits (614), Expect = 6e-62, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 112/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK + +RTGR PS+L + VE YG+ PL QVANV + R L Sbjct: 17 KDAQERMVKSVDALKNSLQKIRTGRAHPSLLSGLTVEYYGAPTPLTQVANVIAEDARTLA 76 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DK + VE+ I S+LGLNP+ G V+R+P+P TEERR LVK+ AE ++ Sbjct: 77 ITVFDKTLTPLVEKAIMTSDLGLNPMSAGTVIRVPLPPLTEERRKDLVKIVRGEAEGGRV 136 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD LK K + SED +++IQK+TD+ +KN+D K+KE+M Sbjct: 137 AIRNIRRDANGDLKALLKDKEISEDEDRKAQDEIQKLTDAAVKNVDEVLAVKEKELMEV 195 >gi|126699754|ref|YP_001088651.1| ribosome recycling factor [Clostridium difficile 630] gi|254975733|ref|ZP_05272205.1| ribosome recycling factor [Clostridium difficile QCD-66c26] gi|255093120|ref|ZP_05322598.1| ribosome recycling factor [Clostridium difficile CIP 107932] gi|255101273|ref|ZP_05330250.1| ribosome recycling factor [Clostridium difficile QCD-63q42] gi|255307149|ref|ZP_05351320.1| ribosome recycling factor [Clostridium difficile ATCC 43255] gi|255314862|ref|ZP_05356445.1| ribosome recycling factor [Clostridium difficile QCD-76w55] gi|255517536|ref|ZP_05385212.1| ribosome recycling factor [Clostridium difficile QCD-97b34] gi|255650647|ref|ZP_05397549.1| ribosome recycling factor [Clostridium difficile QCD-37x79] gi|260683737|ref|YP_003215022.1| ribosome recycling factor [Clostridium difficile CD196] gi|260687397|ref|YP_003218531.1| ribosome recycling factor [Clostridium difficile R20291] gi|306520574|ref|ZP_07406921.1| ribosome recycling factor [Clostridium difficile QCD-32g58] gi|122973796|sp|Q185S5|RRF_CLOD6 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|115251191|emb|CAJ69022.1| Ribosome-recycling factor [Clostridium difficile] gi|260209900|emb|CBA63839.1| ribosome recycling factor [Clostridium difficile CD196] gi|260213414|emb|CBE05060.1| ribosome recycling factor [Clostridium difficile R20291] Length = 185 Score = 240 bits (614), Expect = 6e-62, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 118/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++++M TI LK + T+R GR + MLD ++V+ YG+ P+NQ+ ++V EPR+L+ Sbjct: 7 KQLEEKMNGTIDALKFEFGTIRAGRANAQMLDKIRVDYYGTPTPINQIGAISVPEPRILM 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S WDK + +E+ I S+LGLNP +G+V+R+ VP TEERR L K A AE+ K+ Sbjct: 67 ISPWDKSAMHEIEKAIANSDLGLNPSNDGEVIRLSVPALTEERRKELAKKASKAAEEFKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +RN RRD + +KK K G+ +ED + ++++QK+TD IK ID+ +K+K+IM Sbjct: 127 RIRNERRDANEKIKKMEKGGELTEDELKKAQDEVQKMTDKFIKEIDTLLSKKEKDIMEV 185 >gi|90408931|ref|ZP_01217066.1| ribosome releasing factor [Psychromonas sp. CNPT3] gi|90309959|gb|EAS38109.1| ribosome releasing factor [Psychromonas sp. CNPT3] Length = 185 Score = 240 bits (614), Expect = 6e-62, Method: Composition-based stats. Identities = 78/179 (43%), Positives = 112/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + + RM T+ K + +RTGR PS+LD + V YGS+ PL QV+N++ + R L Sbjct: 7 SDAQTRMSKTVESFKSQLAKVRTGRAHPSLLDGIMVPYYGSNTPLRQVSNISTEDSRTLT 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+V+D ++A+VE+ I SNLGLNP+ G V+RIP+P TEERR L+KV AE S+I Sbjct: 67 VTVFDATLIAAVEKAIMGSNLGLNPMSAGTVIRIPLPPLTEERRKDLIKVVRGEAENSRI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD LK K SED + E +QK+T+ ++K+ID K+KE+M Sbjct: 127 AIRNIRRDANGDLKGLEKDKDISEDDLRVGEELVQKVTNDSVKSIDDLLAVKEKELMEV 185 >gi|16126163|ref|NP_420727.1| ribosome recycling factor [Caulobacter crescentus CB15] gi|221234934|ref|YP_002517370.1| ribosome recycling factor [Caulobacter crescentus NA1000] gi|22001950|sp|Q9A706|RRF_CAUCR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|254809500|sp|B8GWS0|RRF_CAUCN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|13423373|gb|AAK23895.1| ribosome recycling factor [Caulobacter crescentus CB15] gi|220964106|gb|ACL95462.1| ribosome Recycling factor (RRF) [Caulobacter crescentus NA1000] Length = 188 Score = 240 bits (614), Expect = 6e-62, Method: Composition-based stats. Identities = 98/180 (54%), Positives = 124/180 (68%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +DRM +S LK++ +LRTGR S S+LD V VEAYGS PLN VA+V+V EPR + Sbjct: 9 LSRYRDRMDKAVSALKEEFGSLRTGRASASLLDQVMVEAYGSTTPLNAVASVSVPEPRQI 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VSVWD+ +V SVE+ I S LGLNP+VEGQ LRIP+P TEERR L K+A YAE+ K Sbjct: 69 NVSVWDRGVVVSVEKAIRASGLGLNPVVEGQNLRIPIPPLTEERRRDLQKIAGKYAEQQK 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I+VRN+RRD D LKK+ K G +ED +E ++QK+TD IK ID + K+ EIM Sbjct: 129 IAVRNVRRDANDDLKKAEKDGAIAEDERKKMETEVQKMTDDAIKRIDEALKTKEHEIMQV 188 >gi|254420584|ref|ZP_05034308.1| ribosome recycling factor [Brevundimonas sp. BAL3] gi|196186761|gb|EDX81737.1| ribosome recycling factor [Brevundimonas sp. BAL3] Length = 185 Score = 240 bits (614), Expect = 6e-62, Method: Composition-based stats. Identities = 96/181 (53%), Positives = 128/181 (70%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 +++ +DRM + LK++ LRTGR + +L+ V+VEAYGS PL+ VA ++V EPRM Sbjct: 5 EVKTYRDRMEKAVVALKEEFSGLRTGRANAGLLEPVRVEAYGSASPLSAVAAISVPEPRM 64 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 + V+VWDK MV +VE+ I +NLGLNPIV+GQ LRIPVP TEERR LVK+A Y E+ Sbjct: 65 ISVNVWDKGMVVAVEKAIRNANLGLNPIVDGQTLRIPVPPLTEERRKDLVKLAGKYTEQQ 124 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 KI+VRN+RRD D LKK+ K+G+ S+D LE DIQK TD+ IK ID + K++EIM Sbjct: 125 KIAVRNVRRDANDDLKKAEKAGEISQDEQKKLEADIQKETDAAIKRIDEALKTKEQEIMQ 184 Query: 186 F 186 Sbjct: 185 V 185 >gi|16272749|ref|NP_438968.1| ribosome recycling factor [Haemophilus influenzae Rd KW20] gi|148827996|ref|YP_001292749.1| ribosome recycling factor [Haemophilus influenzae PittGG] gi|260579900|ref|ZP_05847730.1| ribosome recycling factor [Haemophilus influenzae RdAW] gi|1173172|sp|P44307|RRF_HAEIN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166230791|sp|A5UHW0|RRF_HAEIG RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|1573820|gb|AAC22467.1| ribosome releasing factor (rrf) [Haemophilus influenzae Rd KW20] gi|148719238|gb|ABR00366.1| ribosome recycling factor [Haemophilus influenzae PittGG] gi|260093184|gb|EEW77117.1| ribosome recycling factor [Haemophilus influenzae RdAW] Length = 185 Score = 240 bits (614), Expect = 6e-62, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ +DRM ++ LK + +RTGR PS+LD ++VE YG+ PL Q+ANV + R L Sbjct: 7 KDAQDRMEKSLEALKGHISKIRTGRAQPSLLDAIQVEYYGAATPLRQLANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+V+D+ ++++VE+ I S+LGLNP G +R+P+P TEERR L+K+ E+ K+ Sbjct: 67 VTVFDRSLISAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIVKGEGEQGKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD D +K K + SE+ E +IQKITD IK +D +K+KE+M F Sbjct: 127 AVRNVRRDANDKIKALLKDKEISENEQHKAEEEIQKITDIYIKKVDEVLADKEKELMDF 185 >gi|329767058|ref|ZP_08258586.1| ribosome-recycling factor [Gemella haemolysans M341] gi|328837783|gb|EGF87408.1| ribosome-recycling factor [Gemella haemolysans M341] Length = 185 Score = 240 bits (614), Expect = 6e-62, Method: Composition-based stats. Identities = 78/186 (41%), Positives = 122/186 (65%), Gaps = 1/186 (0%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M + I + N+ +RM I+ L++++ ++R G+ S ++LD + V+ YG P+NQVA V+V Sbjct: 1 MPEQI-MNNLNERMEKAIASLRRELASIRAGKASAAVLDRLTVDYYGVPTPINQVAGVSV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EP+MLV+S ++K ++ +E+ I S+LGLNP +G V+RI P TEERR L K+ Sbjct: 60 PEPKMLVISPYEKTLLGDIEKVIQASDLGLNPANDGTVIRIVFPALTEERRKELAKLVGK 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 +E +K++VRN+RRD MD +KK KS + +ED + +DIQK+TD I ID +EK+ Sbjct: 120 ESEGAKVAVRNVRRDAMDSMKKLEKSSQITEDDLKGYSDDIQKVTDKFIAEIDKVTKEKQ 179 Query: 181 KEIMHF 186 E+M Sbjct: 180 DELMSV 185 >gi|210622737|ref|ZP_03293329.1| hypothetical protein CLOHIR_01277 [Clostridium hiranonis DSM 13275] gi|210154069|gb|EEA85075.1| hypothetical protein CLOHIR_01277 [Clostridium hiranonis DSM 13275] Length = 185 Score = 240 bits (614), Expect = 6e-62, Method: Composition-based stats. Identities = 77/179 (43%), Positives = 116/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++ +M TI LK + T+R GR + +MLD V+V+ YG+ P+NQ+A ++V EPR L+ Sbjct: 7 EQLEQKMDATIEALKFEFGTIRAGRANAAMLDKVRVDYYGTLTPINQMAAISVPEPRTLM 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++ WDK + +E+ I S++GL P +G V+R+ VP TEERR L K AH +E K+ Sbjct: 67 ITPWDKSSMHEIEKAIANSDVGLTPSNDGSVIRLSVPALTEERRKELAKKAHKASEDFKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +RN RRD D LKK K+G+ +ED + ++QKITD IK IDS + +K+K+IM Sbjct: 127 RIRNERRDANDKLKKIEKAGEITEDELKKATEEVQKITDKYIKEIDSLYAKKEKDIMEV 185 >gi|325661706|ref|ZP_08150329.1| ribosome-recycling factor [Lachnospiraceae bacterium 4_1_37FAA] gi|325471959|gb|EGC75174.1| ribosome-recycling factor [Lachnospiraceae bacterium 4_1_37FAA] Length = 183 Score = 240 bits (614), Expect = 6e-62, Method: Composition-based stats. Identities = 79/186 (42%), Positives = 116/186 (62%), Gaps = 3/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 MN+ +++ ++M + + L ++ T+R GR +P +LD + V+ YGS P+ QVANV+V Sbjct: 1 MNERLNV--FNEKMEKSYNSLTSELATIRAGRANPHVLDKLTVDYYGSPTPIQQVANVSV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E RM+ + W+K MV +E+ I S++G+NP +G V+R+ PE TEERR LVK Sbjct: 59 PEARMIQIQPWEKSMVREIEKAILTSDIGINPTNDGTVIRLVFPELTEERRKELVKDVKK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E K++VRNIRRDG D KK K + SED + LE+++QK+TD I ID E K Sbjct: 119 KGEAGKVAVRNIRRDGNDTFKKL-KGTEVSEDEIKDLEDELQKLTDKYIAQIDKAVEAKS 177 Query: 181 KEIMHF 186 KE+M Sbjct: 178 KEVMTV 183 >gi|289208668|ref|YP_003460734.1| ribosome recycling factor [Thioalkalivibrio sp. K90mix] gi|288944299|gb|ADC71998.1| ribosome recycling factor [Thioalkalivibrio sp. K90mix] Length = 185 Score = 240 bits (614), Expect = 6e-62, Method: Composition-based stats. Identities = 78/180 (43%), Positives = 116/180 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +++ + RM +I L+ ++ +RTGR PS+L+ V V+ YG VP+NQVAN+ + R L Sbjct: 6 IKDARQRMDKSIEALRNELAKIRTGRAHPSLLEHVHVDYYGMEVPINQVANINAEDSRTL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V ++K+MVA VE+ I S+LGLNP G V+R+P+P TEERR LVKV A AE ++ Sbjct: 66 AVVPYEKDMVAKVEKAIMTSDLGLNPASMGTVIRVPLPALTEERRRDLVKVVRAEAENAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD + K++ K + SED + +QK+TD I ID+ E+K+ E+M Sbjct: 126 VAVRNIRRDANNTFKQAVKDKEVSEDEERKAQEQVQKLTDDHIAKIDALLEDKEAELMEV 185 >gi|149202144|ref|ZP_01879117.1| ribosome recycling factor [Roseovarius sp. TM1035] gi|149144242|gb|EDM32273.1| ribosome recycling factor [Roseovarius sp. TM1035] Length = 187 Score = 240 bits (614), Expect = 6e-62, Method: Composition-based stats. Identities = 86/182 (47%), Positives = 121/182 (66%), Gaps = 1/182 (0%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 ID +++ RM I LK + +LRTGR S SML+ + V+AYG P+NQV V V EPR Sbjct: 7 IDTGDLERRMEGAIGALKTEFASLRTGRASASMLEPIMVDAYGQKTPINQVGTVNVPEPR 66 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ V+VWDK +V VE+ I ES LG+NP + G ++ +P+PE E+RR L KVA YAE Sbjct: 67 MVTVNVWDKGLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEQRRKELTKVAAQYAEH 126 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++++VRN+RRDGMD +KK++ G SED E+++Q +TD IK++D E K+ EIM Sbjct: 127 ARVAVRNVRRDGMDQIKKAKGDG-MSEDDQKFWESEVQSLTDRFIKHVDELLEGKQAEIM 185 Query: 185 HF 186 Sbjct: 186 QV 187 >gi|313888244|ref|ZP_07821915.1| ribosome recycling factor [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845647|gb|EFR33037.1| ribosome recycling factor [Peptoniphilus harei ACS-146-V-Sch2b] Length = 185 Score = 240 bits (614), Expect = 6e-62, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 121/179 (67%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N + RM +I L + + ++R GR + S+LD + V+ YG PLNQVA+++ E R+L Sbjct: 7 KNTESRMSKSIDSLTESLQSIRAGRANTSLLDRIYVDYYGQQSPLNQVASLSAPEARLLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + WD ++ +E+ I +S+LG+ P +G+++R+ +P+ TEERR L K+ YAE++K+ Sbjct: 67 IQPWDATLIPEIEKAIQKSDLGITPSNDGKIIRLVIPQLTEERRKDLTKLVGKYAEEAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RNIRRD M+ +KK+ K+ + SED + E DIQK+TD IK++DS +K+KE+M Sbjct: 127 SIRNIRRDAMEDIKKAEKAKEISEDDRKTYEEDIQKLTDKYIKDVDSVAADKEKELMEI 185 >gi|302525191|ref|ZP_07277533.1| ribosome recycling factor [Streptomyces sp. AA4] gi|302434086|gb|EFL05902.1| ribosome recycling factor [Streptomyces sp. AA4] Length = 185 Score = 240 bits (614), Expect = 6e-62, Method: Composition-based stats. Identities = 70/180 (38%), Positives = 116/180 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++M +S K+D+ ++RTGR PSM + VE YG+ PLNQ+A+V V E RM Sbjct: 6 LLDAEEKMEKAVSVAKEDLTSVRTGRAHPSMFSRIVVEYYGAPTPLNQLASVNVPEARMA 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D+ + ++E+ I ES+LG+NP +G V+RI +P+ TEERR +VKVA E ++ Sbjct: 66 LIKPYDQTQLNAIEKAIRESDLGVNPSNDGNVIRIVIPQLTEERRKEMVKVAKGKGEDAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+R+IRR + L + K G+A ED VA E ++Q +TD+ + +D + K+ E++ Sbjct: 126 VSIRSIRRKAKEELDRIAKDGEAGEDEVARAEKELQNLTDTYVHQVDELVKHKEAELLEV 185 >gi|152978335|ref|YP_001343964.1| ribosome recycling factor [Actinobacillus succinogenes 130Z] gi|171704207|sp|A6VM32|RRF_ACTSZ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|150840058|gb|ABR74029.1| ribosome recycling factor [Actinobacillus succinogenes 130Z] Length = 185 Score = 240 bits (614), Expect = 6e-62, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 116/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ +DRM ++ LK + +RTGR PS+LD ++V+ YG+ PL Q+ANV + R L Sbjct: 7 KDAQDRMEKSLEALKGHISKIRTGRAQPSLLDAIQVDYYGAATPLRQLANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+V+D+ ++ +VE+ I S+LGLNP G +R+P+P TEERR L K+ A E+ K+ Sbjct: 67 VTVFDRSLIQAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLTKLVKAEGEQGKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD + +K K + SE+ E+DIQK+TDS +K +D +K+KE+M F Sbjct: 127 AVRNVRRDANEKIKALLKDKEISENEQRKAEDDIQKLTDSFVKKVDEVLADKEKELMDF 185 >gi|229845859|ref|ZP_04465971.1| ribosome recycling factor [Haemophilus influenzae 7P49H1] gi|229810863|gb|EEP46580.1| ribosome recycling factor [Haemophilus influenzae 7P49H1] Length = 185 Score = 240 bits (614), Expect = 7e-62, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ +DRM ++ LK + +RTGR PS+LD ++VE YG+ PL Q+ANV + R L Sbjct: 7 KDAQDRMEKSLEALKGHISKIRTGRAQPSLLDAIQVEYYGAATPLRQLANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+V+D+ ++++VE+ I S+LGLNP G +R+P+P TEERR L+K+ E+ K+ Sbjct: 67 VTVFDRSLISAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRNLIKIVKGEGEQGKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD D +K K + SE+ E +IQKITD IK +D +K+KE+M F Sbjct: 127 AIRNVRRDANDKIKALLKDKEISENEQHKAEEEIQKITDIYIKKVDEVLADKEKELMDF 185 >gi|330445148|ref|ZP_08308800.1| ribosome recycling factor [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489339|dbj|GAA03297.1| ribosome recycling factor [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 185 Score = 240 bits (613), Expect = 7e-62, Method: Composition-based stats. Identities = 82/179 (45%), Positives = 120/179 (67%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ + RM ++ LK ++ +RTGR PS+LD + VE YG++ PLNQVANV + R L Sbjct: 7 QDAQSRMEKSVEALKNQLVKIRTGRAHPSLLDTISVEYYGANTPLNQVANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+E+ VE+ I S+LGLNP+ G V+R+P+P TEERR LVK+ A AE+ ++ Sbjct: 67 ITVFDRELAPKVEKAIMMSDLGLNPMSAGTVIRVPLPPLTEERRRDLVKIVRAEAEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD ++K K + SED +++IQK+TD IKNID+ E K+KE+M Sbjct: 127 AVRNIRRDANANVKALLKDKEISEDDDRRAQDEIQKLTDDAIKNIDAVLEVKEKELMEV 185 >gi|253999117|ref|YP_003051180.1| ribosome recycling factor [Methylovorus sp. SIP3-4] gi|313201218|ref|YP_004039876.1| ribosome recycling factor [Methylovorus sp. MP688] gi|253985796|gb|ACT50653.1| ribosome recycling factor [Methylovorus sp. SIP3-4] gi|312440534|gb|ADQ84640.1| ribosome recycling factor [Methylovorus sp. MP688] Length = 185 Score = 240 bits (613), Expect = 7e-62, Method: Composition-based stats. Identities = 73/179 (40%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N + +M ++ LK D+ +RTGR +LD V VE YGS V +NQVANVT+ + R + Sbjct: 7 KNAEQKMQKSLESLKSDLGKVRTGRAHTGLLDHVMVEYYGSMVAVNQVANVTLGDARTIN 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V ++K MVA +E+ I + +LGLNP G V+R+P+P TEERR L+KV E +K+ Sbjct: 67 VQPYEKNMVAKIEKAIRDGDLGLNPATNGDVIRVPMPMLTEERRRDLIKVVRTEGENAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD D LKK K + SED +++++QK+TD + +D + K+ ++M Sbjct: 127 AIRNVRRDANDQLKKLTKDKEISEDDERRMQDEVQKLTDRFVAEVDKLLQVKEADLMAV 185 >gi|266622994|ref|ZP_06115929.1| ribosome recycling factor [Clostridium hathewayi DSM 13479] gi|288865250|gb|EFC97548.1| ribosome recycling factor [Clostridium hathewayi DSM 13479] Length = 184 Score = 240 bits (613), Expect = 7e-62, Method: Composition-based stats. Identities = 82/181 (45%), Positives = 118/181 (65%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 LQ +D+M T+ L+ D MT+R GR +P +LD +KV+ YG+ PL QV N+ V E RM Sbjct: 4 SLQVYEDKMNKTLEVLESDYMTIRAGRANPHVLDKIKVDYYGTPTPLQQVGNINVPEARM 63 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 +++ W+K ++ ++E+ I S+LG+NP +G V+R+ PE TEERR LVK E + Sbjct: 64 IIIQPWEKSLLKAIEKAILTSDLGINPTNDGSVIRLVFPELTEERRKELVKDVKKKGEAA 123 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 K++VRNIRRDG D+ KK +K+ + SED +A E DIQK+TD I ID E K KE++ Sbjct: 124 KVAVRNIRRDGNDYFKKLQKADEISEDDLAEAEEDIQKLTDKMIGKIDKAIEAKSKELLT 183 Query: 186 F 186 Sbjct: 184 V 184 >gi|190360296|sp|Q21HH5|RRF_SACD2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor Length = 185 Score = 240 bits (613), Expect = 7e-62, Method: Composition-based stats. Identities = 73/179 (40%), Positives = 110/179 (61%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++RM I L +RTGR PS+LD V V YGS PL+QVANVTVL+ R L Sbjct: 7 SDSEERMSRAIEALGTHFNKIRTGRAHPSILDGVMVSYYGSATPLSQVANVTVLDARTLS 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S W+K +V +E+ I +S+LGLNP+ G ++R+P+P TEE R +K A A AE +++ Sbjct: 67 ISPWEKNIVPEIEKAIMKSDLGLNPVTTGDLIRVPMPMLTEETRKGYIKRARAEAESARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RN+RRD + +K K + SED ++IQ+IT+ + +D K+K++M Sbjct: 127 SIRNVRRDALAEVKALVKDKEISEDDERRAADEIQQITNKYVAEVDKALSAKEKDLMEI 185 >gi|119774279|ref|YP_927019.1| ribosome recycling factor [Shewanella amazonensis SB2B] gi|166231223|sp|A1S4P3|RRF_SHEAM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|119766779|gb|ABL99349.1| ribosome recycling factor [Shewanella amazonensis SB2B] Length = 185 Score = 240 bits (613), Expect = 7e-62, Method: Composition-based stats. Identities = 79/179 (44%), Positives = 112/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ +DRMG + K M +RTGR PS+LD ++V YGS PL QV NVT+ + R L Sbjct: 7 KDAQDRMGKCVEATKAQMAKVRTGRAHPSLLDTIQVNYYGSMTPLKQVGNVTIEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+V+D+ + +VE+ I S+LGLNP+ G +RIP+P TEERR LVKV A AE+ ++ Sbjct: 67 VNVFDRSAIQAVEKAIMSSDLGLNPMSAGATIRIPLPPLTEERRRDLVKVVRAEAEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD K+ K + +ED V E ++QKITD IK ID K+ E+M Sbjct: 127 AIRNVRRDANSSFKQLEKEKECTEDDVRRSEEEVQKITDLHIKKIDELLAAKEAELMEV 185 >gi|260583805|ref|ZP_05851553.1| ribosome recycling factor [Granulicatella elegans ATCC 700633] gi|260158431|gb|EEW93499.1| ribosome recycling factor [Granulicatella elegans ATCC 700633] Length = 186 Score = 240 bits (613), Expect = 7e-62, Method: Composition-based stats. Identities = 79/186 (42%), Positives = 123/186 (66%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M + N K+RM T L++++ +R GR + S+LD ++VE YG P+NQ+A+VTV Sbjct: 1 MTATEIIANAKERMKKTEDALQRELGGIRAGRANASLLDRLQVEYYGVPTPVNQLASVTV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E RML+++ +DK + +ER I S++G+ P +G V+R+ +P+ TEERR L K Sbjct: 61 PEARMLLITPYDKSSLQDIERAILMSDIGITPTNDGSVVRLVIPQLTEERRKELAKQVGK 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE +K+SVRNIRRD ++HLKK+ K+ + +ED + E DIQK+TD ++KNID + K+ Sbjct: 121 EAEGAKVSVRNIRRDAIEHLKKAEKNKEITEDDLRGYEKDIQKLTDDSVKNIDHLAQVKE 180 Query: 181 KEIMHF 186 KE++ Sbjct: 181 KELLEV 186 >gi|254496412|ref|ZP_05109292.1| ribosome recycling factor [Legionella drancourtii LLAP12] gi|254354359|gb|EET13014.1| ribosome recycling factor [Legionella drancourtii LLAP12] Length = 185 Score = 240 bits (613), Expect = 8e-62, Method: Composition-based stats. Identities = 78/179 (43%), Positives = 111/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ + RM TI L DM +RTGR + +LD V+V+ YG+ PLNQ+AN+T + R + Sbjct: 7 QDSEKRMRKTIDSLHIDMSKIRTGRANVGLLDHVQVDYYGTLTPLNQIANITASDSRTIS 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+ W+K MVA+VE+ I S+LGLNP G +R+P+P TEERR L+KV E+ K+ Sbjct: 67 VTPWEKNMVAAVEKAILTSDLGLNPATNGNAIRVPMPPLTEERRKELIKVVRNEGEQGKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RNIRRD + LK+ K SED + IQK+TD I +D+ K+K++M Sbjct: 127 SIRNIRRDANNQLKELVKEKAISEDDERRAVDVIQKLTDKYILEVDALLAVKEKDLMEV 185 >gi|120599549|ref|YP_964123.1| ribosome recycling factor [Shewanella sp. W3-18-1] gi|146292454|ref|YP_001182878.1| ribosome recycling factor [Shewanella putrefaciens CN-32] gi|166231227|sp|A4Y546|RRF_SHEPC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166231510|sp|A1RLM4|RRF_SHESW RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|120559642|gb|ABM25569.1| ribosome recycling factor [Shewanella sp. W3-18-1] gi|145564144|gb|ABP75079.1| ribosome recycling factor [Shewanella putrefaciens CN-32] gi|319425756|gb|ADV53830.1| ribosome recycling factor [Shewanella putrefaciens 200] Length = 185 Score = 240 bits (613), Expect = 8e-62, Method: Composition-based stats. Identities = 78/179 (43%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RMG + K M +RTGR PS+LD ++V YG+ PLNQVANV V + R L Sbjct: 7 KDAQERMGKCVDATKNQMAKVRTGRAHPSLLDSIQVSYYGTMTPLNQVANVGVEDSRTLS 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+V+D+ + +VE+ I S+LGLNP+ G LRIP+P TEERR +KV A AE ++ Sbjct: 67 VTVFDRSAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVVRAEAEGGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD + +KK K+ + +ED V E+D+QK TD+ IK +D K+ E+M Sbjct: 127 AIRNVRRDAISEVKKLEKAKECTEDDVRRFEDDVQKFTDAHIKKVDEILAAKEIELMEV 185 >gi|68249403|ref|YP_248515.1| ribosome recycling factor [Haemophilus influenzae 86-028NP] gi|145630555|ref|ZP_01786335.1| ribosome recycling factor [Haemophilus influenzae R3021] gi|145632167|ref|ZP_01787902.1| ribosome recycling factor [Haemophilus influenzae 3655] gi|145634780|ref|ZP_01790488.1| ribosome recycling factor [Haemophilus influenzae PittAA] gi|145636632|ref|ZP_01792299.1| ribosome recycling factor [Haemophilus influenzae PittHH] gi|145640909|ref|ZP_01796491.1| ribosome recycling factor [Haemophilus influenzae R3021] gi|229844676|ref|ZP_04464815.1| ribosome recycling factor [Haemophilus influenzae 6P18H1] gi|260581625|ref|ZP_05849422.1| ribosome recycling factor [Haemophilus influenzae NT127] gi|319775258|ref|YP_004137746.1| ribosome recycling factor [Haemophilus influenzae F3047] gi|319897698|ref|YP_004135895.1| ribosome recycling factor [Haemophilus influenzae F3031] gi|329122815|ref|ZP_08251387.1| ribosome recycling factor [Haemophilus aegyptius ATCC 11116] gi|81336171|sp|Q4QM92|RRF_HAEI8 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|68057602|gb|AAX87855.1| ribosome recycling factor [Haemophilus influenzae 86-028NP] gi|144983945|gb|EDJ91387.1| ribosome recycling factor [Haemophilus influenzae R3021] gi|144987074|gb|EDJ93604.1| ribosome recycling factor [Haemophilus influenzae 3655] gi|145267946|gb|EDK07942.1| ribosome recycling factor [Haemophilus influenzae PittAA] gi|145270158|gb|EDK10094.1| ribosome recycling factor [Haemophilus influenzae PittHH] gi|145274423|gb|EDK14287.1| ribosome recycling factor [Haemophilus influenzae 22.4-21] gi|229812390|gb|EEP48080.1| ribosome recycling factor [Haemophilus influenzae 6P18H1] gi|260095218|gb|EEW79109.1| ribosome recycling factor [Haemophilus influenzae NT127] gi|301169527|emb|CBW29128.1| ribosome recycling factor [Haemophilus influenzae 10810] gi|309973700|gb|ADO96901.1| Ribosome releasing factor [Haemophilus influenzae R2846] gi|317433204|emb|CBY81578.1| ribosome recycling factor [Haemophilus influenzae F3031] gi|317449849|emb|CBY86059.1| ribosome recycling factor [Haemophilus influenzae F3047] gi|327472079|gb|EGF17517.1| ribosome recycling factor [Haemophilus aegyptius ATCC 11116] Length = 185 Score = 240 bits (613), Expect = 8e-62, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ +DRM ++ LK + +RTGR PS+LD ++VE YG+ PL Q+ANV + R L Sbjct: 7 KDAQDRMEKSLEALKGHISKIRTGRAQPSLLDAIQVEYYGAATPLRQLANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+V+D+ ++++VE+ I S+LGLNP G +R+P+P TEERR L+K+ E+ K+ Sbjct: 67 VTVFDRSLISAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIVKGEGEQGKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD D +K K + SE+ E +IQKITD IK +D +K+KE+M F Sbjct: 127 AIRNVRRDANDKIKALLKDKEISENEQHKAEEEIQKITDIYIKKVDEVLADKEKELMDF 185 >gi|299534751|ref|ZP_07048081.1| ribosome recycling factor [Lysinibacillus fusiformis ZC1] gi|298729839|gb|EFI70384.1| ribosome recycling factor [Lysinibacillus fusiformis ZC1] Length = 185 Score = 240 bits (613), Expect = 8e-62, Method: Composition-based stats. Identities = 72/180 (40%), Positives = 119/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ K++M TI+ +++ ++R GR + S+LD + V+ YG+ P+NQ+A V++ E R+L Sbjct: 6 LEQAKEKMNKTIAAFSRELASIRAGRANASLLDRISVDYYGAATPINQLAGVSIPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V++ +DK ++ +E+ I +S++G+ P +G V+R+ +P TEERR LVK AE +K Sbjct: 66 VITPYDKSILGDIEKAIMKSDIGITPTNDGSVIRLMIPALTEERRKDLVKQVKKEAEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I+VRN+RRD D LKK K+G+ +ED + DIQK+TD I +D ++K+KEI+ Sbjct: 126 IAVRNVRRDANDDLKKLEKAGEITEDDLRGYGEDIQKLTDEFIVKVDQVAKDKEKEILEV 185 >gi|218439649|ref|YP_002377978.1| ribosome recycling factor [Cyanothece sp. PCC 7424] gi|226703257|sp|B7K7R4|RRF_CYAP7 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|218172377|gb|ACK71110.1| ribosome recycling factor [Cyanothece sp. PCC 7424] Length = 182 Score = 240 bits (613), Expect = 8e-62, Method: Composition-based stats. Identities = 66/177 (37%), Positives = 110/177 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++D M TI ++ T+RTGR + ++LD V V+ YG+ PL +AN+T + + Sbjct: 3 LSEVQDNMQKTIESTQRSFNTIRTGRANSALLDRVMVDYYGTETPLKSLANITTPDATTI 62 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + +D+ + +E+ I S++GL P +GQ++R+ +P T ERR LVK+A AE+ K Sbjct: 63 AIQPYDRGSMGQIEKAIQLSDIGLTPNNDGQMIRLNIPPLTTERRKELVKLAGKLAEEGK 122 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +++RNIRRD +D ++K K+ + SED +L+++IQK+TD ID K+K+I Sbjct: 123 VAIRNIRRDAIDSVRKQEKNHELSEDESRNLQDEIQKVTDEYTAKIDELLAAKEKDI 179 >gi|212704264|ref|ZP_03312392.1| hypothetical protein DESPIG_02319 [Desulfovibrio piger ATCC 29098] gi|212672344|gb|EEB32827.1| hypothetical protein DESPIG_02319 [Desulfovibrio piger ATCC 29098] Length = 186 Score = 240 bits (613), Expect = 8e-62, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 116/180 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +DRM ++ L++D LRTGR + +++D +K + YG+ P++Q+A+V V + R + Sbjct: 7 LLDTEDRMEKAMAALERDFQKLRTGRATTALVDGIKADYYGTPTPISQMASVAVPDSRTI 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK ++ VE+ I +S+LGL P+ +G+++RI +P TEERR LVKVA Y E +K Sbjct: 67 TIQPWDKGGISVVEKAILKSDLGLTPVNDGRIIRINIPPLTEERRKELVKVARKYTEDAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RRD D LKK K +ED E ++QK+TD + + D + K+KEIM Sbjct: 127 VAVRNVRRDANDSLKKLEKEKAITEDEQKKAEAEVQKLTDKFVADADKRSQAKEKEIMDI 186 >gi|224066503|ref|XP_002302112.1| predicted protein [Populus trichocarpa] gi|222843838|gb|EEE81385.1| predicted protein [Populus trichocarpa] Length = 286 Score = 240 bits (613), Expect = 9e-62, Method: Composition-based stats. Identities = 69/179 (38%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + K RM TI ++ + ++RTGR +PSMLD ++VE YG+ V L +A ++ + L+ Sbjct: 108 DDAKGRMEKTIDTMRANFNSVRTGRANPSMLDKIEVEYYGTPVSLKSIAQISTPDASSLL 167 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +DK + ++E+ I S+LGL P +G+V+R+ +P+ T ERR L K+ AE+ K+ Sbjct: 168 VQPYDKSSLKAIEKAIVSSDLGLTPNNDGEVIRMSIPQLTSERRKELSKMVAKLAEEGKV 227 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD + +K K K SED V L +D+QK+TD +K +++ F++K+KE++ Sbjct: 228 ALRNIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQKLTDEYMKKLENIFKQKEKELLKV 286 >gi|85708126|ref|ZP_01039192.1| ribosome recycling factor [Erythrobacter sp. NAP1] gi|85689660|gb|EAQ29663.1| ribosome recycling factor [Erythrobacter sp. NAP1] Length = 185 Score = 239 bits (612), Expect = 9e-62, Method: Composition-based stats. Identities = 85/180 (47%), Positives = 122/180 (67%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D + + RM + LK D+ LRTGR + S+LD V VE YGS +PL VA V EPR Sbjct: 4 YDKADTERRMNGAVESLKGDLSGLRTGRANTSLLDPVVVEVYGSMMPLASVATVNTPEPR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ V VWDK V++VE+GI ++NLGLNP+ +GQ +R+P+P+ TEERR L K+A YAEK Sbjct: 64 MISVQVWDKSNVSAVEKGITKANLGLNPMTDGQTIRLPMPDLTEERRKELAKLAGQYAEK 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +KI++RN+RRD M+ LK K + SED +E+++QK+TD + + D +K++EI+ Sbjct: 124 AKIAIRNVRRDAMESLKTDEKKKEISEDDRKRMEDEVQKLTDKYVADTDEAAAKKEQEIL 183 >gi|113970973|ref|YP_734766.1| ribosome recycling factor [Shewanella sp. MR-4] gi|114048197|ref|YP_738747.1| ribosome recycling factor [Shewanella sp. MR-7] gi|123130244|sp|Q0HGV8|RRF_SHESM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|123131225|sp|Q0HT65|RRF_SHESR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|113885657|gb|ABI39709.1| ribosome recycling factor [Shewanella sp. MR-4] gi|113889639|gb|ABI43690.1| ribosome recycling factor [Shewanella sp. MR-7] Length = 185 Score = 239 bits (612), Expect = 9e-62, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RMG + K M +RTGR PS+LD ++V YG+ PLNQVANV + + R L Sbjct: 7 KDAQERMGKCVEATKNQMAKVRTGRAHPSLLDSIQVSYYGTMTPLNQVANVGIEDARTLS 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+V+D+ + +VE+ I S+LGLNP+ G LRIP+P TEERR +KV A AE ++ Sbjct: 67 VTVFDRSAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVVRAEAEGGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD + +KK K+ + +ED V E+++QK TD+ IK +D K+ E+M Sbjct: 127 AIRNVRRDAISDVKKLEKAKECTEDDVRRFEDEVQKFTDAHIKKVDEILAAKEIELMEV 185 >gi|99081254|ref|YP_613408.1| ribosome recycling factor [Ruegeria sp. TM1040] gi|122984285|sp|Q1GGS0|RRF_SILST RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|99037534|gb|ABF64146.1| ribosome recycling factor [Ruegeria sp. TM1040] Length = 187 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 88/188 (46%), Positives = 126/188 (67%), Gaps = 3/188 (1%) Query: 1 MNQVIDLQ--NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 M++ +L ++K RM ++ LK + +LRTGR S SML+ V V+AYGS P+NQV V Sbjct: 1 MSEEFELDTDDLKRRMDGAMANLKTEFASLRTGRASASMLEPVMVDAYGSMTPINQVGTV 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 V EPRM+ ++VWDK +V VE+ I ES LG+NP + G ++ +P+PE EERR L KVA Sbjct: 61 NVPEPRMVTINVWDKGLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRRELTKVA 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 YAE +++S+RN+RRDGMD +KK++ G SED E ++Q++TD IK +D+ E Sbjct: 121 GQYAEHARVSIRNVRRDGMDQIKKAKADG-MSEDDQKFWETEVQELTDKMIKAVDAALET 179 Query: 179 KKKEIMHF 186 K+ EIM Sbjct: 180 KQAEIMQV 187 >gi|317493185|ref|ZP_07951608.1| ribosome recycling protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918845|gb|EFV40181.1| ribosome recycling protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 185 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 77/179 (43%), Positives = 116/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM + K ++ +RTGR P++LD + VE YGS PL QVANV + R L Sbjct: 7 KDAETRMDKCVEAFKSNISKIRTGRAHPNLLDGISVEYYGSATPLRQVANVVAEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ + A+VE+ I S+LGLNP+ G V+R+P+P TEERR L+K+ A AE+ ++ Sbjct: 67 ITVFDRSLSAAVEKAIMASDLGLNPMSAGAVIRVPLPALTEERRKDLIKLVRAEAEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRN+RRD D +K K + SED ++++QK+TD IK IDS +K+KE+M Sbjct: 127 SVRNVRRDANDKVKVLLKDKEISEDEDRKSQDEVQKMTDVMIKKIDSALADKEKELMEV 185 >gi|284048715|ref|YP_003399054.1| ribosome recycling factor [Acidaminococcus fermentans DSM 20731] gi|283952936|gb|ADB47739.1| ribosome recycling factor [Acidaminococcus fermentans DSM 20731] Length = 187 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 78/187 (41%), Positives = 120/187 (64%), Gaps = 1/187 (0%) Query: 1 MNQVIDLQ-NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVT 59 M + +LQ +++M + L+ ++ +RTGR +PS+LD VKV+ YG+ P+ QVANV+ Sbjct: 1 MATIEELQTKTQEKMDKALHALRNELTNIRTGRATPSLLDQVKVDYYGAPTPVTQVANVS 60 Query: 60 VLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 V EPRM+V+ WD+ ++ +E+ I S+LGLNP +G V+R+ +P TEERR LVKV + Sbjct: 61 VPEPRMIVIQPWDRSLLKVIEKAIMTSDLGLNPNNDGTVIRLNLPLLTEERRKELVKVVN 120 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 E S++ +RNIRRD D +KK K+ + +ED + QK+TD +K ID +K Sbjct: 121 KKGEASRVEIRNIRRDFNDAVKKQVKAKEITEDDAKDATDFSQKLTDKFMKKIDDVLAQK 180 Query: 180 KKEIMHF 186 +KE+M Sbjct: 181 EKEVMSV 187 >gi|117921253|ref|YP_870445.1| ribosome recycling factor [Shewanella sp. ANA-3] gi|166231228|sp|A0KZ20|RRF_SHESA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|117613585|gb|ABK49039.1| ribosome recycling factor [Shewanella sp. ANA-3] Length = 185 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RMG + K M +RTGR PS+LD ++V YG+ PLNQVANV + + R L Sbjct: 7 KDAQERMGKCVEATKNQMAKVRTGRAHPSLLDSIQVSYYGTMTPLNQVANVGIEDARTLS 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+V+D+ + +VE+ I S+LGLNP+ G LRIP+P TEERR +KV A AE ++ Sbjct: 67 VTVFDRSAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVVRAEAEGGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD + +KK K+ + +ED V E+++QK TD+ IK +D K+ E+M Sbjct: 127 AIRNVRRDAISEVKKLEKAKECTEDDVRRFEDEVQKFTDAHIKKVDEILAAKEIELMEV 185 >gi|37680738|ref|NP_935347.1| ribosome recycling factor [Vibrio vulnificus YJ016] gi|320155595|ref|YP_004187974.1| ribosome recycling factor [Vibrio vulnificus MO6-24/O] gi|39932018|sp|Q7MIG3|RRF_VIBVY RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|37199487|dbj|BAC95318.1| ribosome recycling factor [Vibrio vulnificus YJ016] gi|319930907|gb|ADV85771.1| ribosome recycling factor [Vibrio vulnificus MO6-24/O] Length = 185 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 112/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK + +RTGR PS+L + V+ YG+ PL QVANV + R L Sbjct: 7 KDAQERMEKSVEALKNSLSKVRTGRAHPSLLSGISVDYYGAATPLTQVANVIAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DKE+ VE+ I S+LGLNP+ G V+R+P+P TEERR LVK+ AE ++ Sbjct: 67 ITVFDKELTQKVEKAIMMSDLGLNPMSAGTVIRVPLPPLTEERRKDLVKIVRGEAEGGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD LK K + SED +++IQK+TD+ +K ID K+KE+M Sbjct: 127 AVRNIRRDANSDLKALLKEKEISEDEDRKAQDEIQKLTDAAVKKIDDVLAAKEKELMEV 185 >gi|227824516|ref|ZP_03989348.1| ribosome recycling factor [Acidaminococcus sp. D21] gi|226905015|gb|EEH90933.1| ribosome recycling factor [Acidaminococcus sp. D21] Length = 187 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 78/187 (41%), Positives = 120/187 (64%), Gaps = 1/187 (0%) Query: 1 MNQVIDLQ-NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVT 59 M + +L+ + + +M + L ++ +RTGR +PS+LD VKV+ YG+ P+NQ+ANV+ Sbjct: 1 MATIEELKADSERKMTSALKALHTELAAIRTGRATPSLLDQVKVDYYGTATPVNQLANVS 60 Query: 60 VLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 V EPRM+V+ WDK ++ +E+ I S+LGLNP +G V+R+ +P TEERR LVKV H Sbjct: 61 VPEPRMIVIQPWDKSLMKEIEKAIMTSDLGLNPNNDGTVIRLSLPILTEERRKELVKVVH 120 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 E ++++VRNIRR+ D +KK K + +ED + QK+TD +K ID +K Sbjct: 121 KKGESARVAVRNIRREYNDAVKKLLKGKEITEDDSKDAMDASQKLTDQYMKQIDDILAKK 180 Query: 180 KKEIMHF 186 +KE+M Sbjct: 181 EKEVMSI 187 >gi|212636274|ref|YP_002312799.1| ribosome recycling factor [Shewanella piezotolerans WP3] gi|226703268|sp|B8CQ82|RRF_SHEPW RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|212557758|gb|ACJ30212.1| Ribosome recycling factor [Shewanella piezotolerans WP3] Length = 185 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 81/178 (45%), Positives = 114/178 (64%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 + + RM + K M +RTGR PS+LD ++V YGS PL QVA+V++ + R L V Sbjct: 8 DAQTRMDKCVESTKTQMAKVRTGRAHPSLLDTIQVPYYGSLTPLKQVASVSIGDARTLNV 67 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 SV+D+ M+A+VE+ I S+LGLNP+ G +RIP+P TEERR L+KV A AE +I+ Sbjct: 68 SVFDRTMIAAVEKAIMSSDLGLNPMSAGATIRIPLPALTEERRKDLIKVVRAEAENGRIA 127 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 VRN+RRD +K K + +ED V E+++QK TD+ IK ID K+KE+M F Sbjct: 128 VRNVRRDANSDVKALEKEKECTEDDVRRTEDEVQKFTDAHIKKIDEILAAKEKELMEF 185 >gi|163736296|ref|ZP_02143715.1| ribosome recycling factor [Phaeobacter gallaeciensis BS107] gi|163741175|ref|ZP_02148567.1| ribosome recycling factor [Phaeobacter gallaeciensis 2.10] gi|161385528|gb|EDQ09905.1| ribosome recycling factor [Phaeobacter gallaeciensis 2.10] gi|161390166|gb|EDQ14516.1| ribosome-recycling factor [Phaeobacter gallaeciensis BS107] Length = 187 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 86/185 (46%), Positives = 125/185 (67%), Gaps = 1/185 (0%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 + ++D +++ RM ++ LK + +LRTGR S SML+ V V+AYGS P+NQV V V Sbjct: 4 DFILDTDDLQRRMDGAMANLKTEFASLRTGRASASMLEPVMVDAYGSMTPINQVGTVNVP 63 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 EPRM+ ++VWDK +V VE+ I ES LG+NP + G ++ +P+PE EERR L KVA Y Sbjct: 64 EPRMVTINVWDKGLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRRDLTKVAGQY 123 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 AE +++S+RN+RRDGMD +KK++ G SED E ++Q++TD IK +D+ E K+ Sbjct: 124 AEHARVSIRNVRRDGMDQIKKAKADG-MSEDDQKLWEGEVQELTDKMIKVVDAALETKQA 182 Query: 182 EIMHF 186 EIM Sbjct: 183 EIMQV 187 >gi|121602369|ref|YP_988895.1| ribosome recycling factor [Bartonella bacilliformis KC583] gi|48474236|sp|Q8RT64|RRF_BARBK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|18920725|gb|AAL82407.1|AF469610_3 ribosome recycling factor [Bartonella bacilliformis] gi|120614546|gb|ABM45147.1| ribosome recycling factor [Bartonella bacilliformis KC583] Length = 186 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 98/186 (52%), Positives = 130/186 (69%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ + ++K RM IS K ++ LRTGR S S+L+ + VEAYGS VP+ QVAN++V Sbjct: 1 MSVTSIMDDLKRRMDGAISAFKHELSGLRTGRASASLLEPLTVEAYGSVVPIKQVANISV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 LEPRML VSVWDK MV +VER I + GLNPIV+G LRIP+PE EERR LVK+AH Sbjct: 61 LEPRMLSVSVWDKTMVGAVERAIRDCGFGLNPIVDGMNLRIPLPELNEERRKELVKIAHQ 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE++++++R++RRDGMD+LKK K G+ S+D SL +QK+TD I +ID K+ Sbjct: 121 YAEQARVAIRHVRRDGMDNLKKLEKEGEISQDEARSLSEKVQKLTDDAIADIDKILIMKE 180 Query: 181 KEIMHF 186 EIM Sbjct: 181 TEIMQV 186 >gi|167624892|ref|YP_001675186.1| ribosome recycling factor [Shewanella halifaxensis HAW-EB4] gi|189044075|sp|B0TP80|RRF_SHEHH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|167354914|gb|ABZ77527.1| ribosome recycling factor [Shewanella halifaxensis HAW-EB4] Length = 185 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 80/179 (44%), Positives = 117/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + + RM + K M +RTGR PS+LD ++V YGS PL QVA+V++ + R L Sbjct: 7 SDAQTRMDKCVESTKTQMAKVRTGRAHPSLLDTIQVPYYGSLTPLKQVASVSIGDARTLT 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 VSV+D+ M+A+VE+ I S+LGLNP+ G +RIP+P TEERR L+KV A AE +I Sbjct: 67 VSVFDRTMIAAVEKAIMSSDLGLNPMSAGATIRIPLPALTEERRKDLIKVVRAEAENGRI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD ++K+ K + +ED V E+D+QK+TD+ IK +D K+KE+M F Sbjct: 127 AIRNVRRDANSNVKELEKEKECTEDDVRRSEDDVQKLTDAHIKLVDDVLAAKEKELMEF 185 >gi|218781002|ref|YP_002432320.1| ribosome recycling factor [Desulfatibacillum alkenivorans AK-01] gi|226703258|sp|B8FGE3|RRF_DESAA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|218762386|gb|ACL04852.1| ribosome recycling factor [Desulfatibacillum alkenivorans AK-01] Length = 185 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 72/179 (40%), Positives = 120/179 (67%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + +++M I+ L+K ++ +RTGR S SMLD VK++ YG+ P+NQ A V + E R++ Sbjct: 7 EEAREKMDKAIAALEKGLLRVRTGRASLSMLDGVKLDYYGTPTPINQAATVAIPESRLIT 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + WD ++ +E+ I +S+LGLNP +G+++RI +P TE+RR +VK+ + +E+ KI Sbjct: 67 IQPWDASVIKDIEKAILKSDLGLNPSNDGKIIRIAIPPLTEDRRKEMVKLVNKMSEEGKI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRNIRRD + +K +K G +ED+ ++++QKITD +K +D +K+KEI+ F Sbjct: 127 SVRNIRRDANETIKSMKKDGDIAEDLAFKGQDEVQKITDDFVKKVDDICAQKEKEILEF 185 >gi|269797920|ref|YP_003311820.1| ribosome recycling factor [Veillonella parvula DSM 2008] gi|294793662|ref|ZP_06758799.1| ribosome recycling factor [Veillonella sp. 3_1_44] gi|269094549|gb|ACZ24540.1| ribosome recycling factor [Veillonella parvula DSM 2008] gi|294455232|gb|EFG23604.1| ribosome recycling factor [Veillonella sp. 3_1_44] Length = 186 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 82/180 (45%), Positives = 122/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 LQ +DRM +I LK + ++RTGR S ++LD V V+ YGS P+NQVAN++V EPRM+ Sbjct: 7 LQQAEDRMNKSIEALKHEFASIRTGRASVALLDKVMVDYYGSPSPINQVANISVPEPRMI 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V++ WDK M+ ++E+ I +S+LGLNP +G +R+ +P+ TEERR +VKV H AE +K Sbjct: 67 VIAPWDKTMIGAIEKAILQSDLGLNPGNDGAQIRLSIPQLTEERRKEIVKVVHKKAEDAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD + LKK K+ +ED + IQK+TD+ +K ID K+K+++ Sbjct: 127 VAVRNIRRDVNEALKKEEKAKTITEDDAKDGLDQIQKLTDAKVKQIDELKVVKEKDVLEV 186 >gi|90415796|ref|ZP_01223729.1| ribosome recycling factor [marine gamma proteobacterium HTCC2207] gi|90332170|gb|EAS47367.1| ribosome recycling factor [marine gamma proteobacterium HTCC2207] Length = 185 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 72/178 (40%), Positives = 103/178 (57%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 RM + L +RTGR PS+LD + V+ YG + PL Q A++ + + R L + Sbjct: 8 EANTRMTKALEALGNAFNKIRTGRAHPSLLDGIHVDYYGVNTPLAQAASIVIEDARTLSL 67 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 + W+K +V ++E+ I +S+LGLNP G V+R+P+P TEE R K A A AE +IS Sbjct: 68 TPWEKSLVPAIEKAILKSDLGLNPTTAGAVIRLPLPSLTEETRKVYGKQAKAEAENGRIS 127 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 VRN+RRD + LK K SED +++IQKITDS I ID K+K++M Sbjct: 128 VRNVRRDVLSSLKALLKDKDISEDEERRGQDEIQKITDSFIARIDEALVAKEKDLMEI 185 >gi|312139239|ref|YP_004006575.1| ribosome recycling factor [Rhodococcus equi 103S] gi|311888578|emb|CBH47890.1| ribosome recycling factor [Rhodococcus equi 103S] Length = 185 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 68/180 (37%), Positives = 109/180 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M I+ K D+ ++RTGR +P M + V VE YGS P+ Q+A++ V EPRM+ Sbjct: 6 LFEAEEKMEKAITVAKDDLGSIRTGRANPGMFNRVVVEYYGSMTPITQLASINVPEPRMV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ ++ + +E I S+LG+NP +G ++RI VP+ TEERR VK A + E +K Sbjct: 66 IIKPYEASQLGPIENAIRNSDLGVNPSNDGSIIRISVPQLTEERRREFVKQAKSKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RN+RR MD L + +K G+A ED V E ++ K T + ID + K+ E+M Sbjct: 126 VAIRNVRRKTMDELSRIQKDGEAGEDEVGRAEKELDKTTSRYVSQIDELVKHKEAELMEV 185 >gi|291547840|emb|CBL20948.1| ribosome recycling factor [Ruminococcus sp. SR1/5] Length = 183 Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats. Identities = 78/180 (43%), Positives = 115/180 (63%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q + +MG T++ L+ ++ T+R GR +P +LD + V+ YG+ PL QVAN++V E RM+ Sbjct: 5 IQVYETKMGKTLNALESELTTIRAGRANPHILDKLTVDYYGAPTPLQQVANISVPEARMI 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + W+ M+ ++E+ I S+LGLNP +G+++R+ PE TEERR LVK E +K Sbjct: 65 QIQPWESSMIKAIEKAILCSDLGLNPSNDGKMIRLVFPELTEERRKELVKDVKKKGEGAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD D KK K SED + LE+ IQK+TD IK +D E K KEI+ Sbjct: 125 VAVRNIRRDANDAFKKLAKQ-DVSEDEIKELEDQIQKLTDKYIKEVDKAIENKSKEILTV 183 >gi|121604663|ref|YP_981992.1| ribosome recycling factor [Polaromonas naphthalenivorans CJ2] gi|166230814|sp|A1VN43|RRF_POLNA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|120593632|gb|ABM37071.1| ribosome recycling factor [Polaromonas naphthalenivorans CJ2] Length = 186 Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats. Identities = 77/186 (41%), Positives = 116/186 (62%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ V Q +M ++ + ++ +RTGR +P +LD V V+ YGS VP++QVANV + Sbjct: 1 MSIVEIKQQATQKMQQSLESFQHNLTKIRTGRANPGLLDTVHVDYYGSMVPISQVANVAL 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 L+ R + VS W+K M A +E+ I +S+LGLNP +G ++R+P+P TEERR L KV A Sbjct: 61 LDARTISVSPWEKGMGAKIEKAIRDSDLGLNPASQGDLIRVPMPAMTEERRKELTKVVRA 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E +K+++RN+RRD D +KK K ASED + +IQK TD I ++D K+ Sbjct: 121 EGEHAKVAIRNLRRDANDGVKKLVKDKLASEDDERRSQEEIQKFTDRFIADVDKLVTGKE 180 Query: 181 KEIMHF 186 ++IM Sbjct: 181 QDIMAV 186 >gi|260767822|ref|ZP_05876757.1| ribosome recycling factor [Vibrio furnissii CIP 102972] gi|260617331|gb|EEX42515.1| ribosome recycling factor [Vibrio furnissii CIP 102972] gi|315179348|gb|ADT86262.1| ribosome recycling factor [Vibrio furnissii NCTC 11218] Length = 185 Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats. Identities = 77/179 (43%), Positives = 112/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK ++ +RTGR PS+L + VE YG+ PLNQ+ANV + R L Sbjct: 7 KDAQERMDKSVEALKNNLQKVRTGRAHPSLLSGLSVEYYGAATPLNQIANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DKE+ VE+ I S+LGLNP+ G V+R+P+P TEERR LVK+ AE ++ Sbjct: 67 ITVFDKELTPKVEKAILMSDLGLNPMSAGTVIRVPLPPLTEERRKDLVKIVRGEAEGGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD LK K + SED + +IQK+TD +K ID K+KE+M Sbjct: 127 AVRNIRRDANSDLKALLKDKEISEDDDRKAQEEIQKLTDIAVKRIDDVLAAKEKELMEV 185 >gi|117925140|ref|YP_865757.1| ribosome recycling factor [Magnetococcus sp. MC-1] gi|166230797|sp|A0L8Q8|RRF_MAGSM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|117608896|gb|ABK44351.1| ribosome recycling factor [Magnetococcus sp. MC-1] Length = 185 Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats. Identities = 84/180 (46%), Positives = 128/180 (71%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +++++ RM +++ LK ++ T+RTGR S S+LD V V AYGS +PLNQVA++TV E RM+ Sbjct: 6 IKDLEQRMNKSLAALKDELATVRTGRASTSLLDAVMVNAYGSMMPLNQVASMTVPEARMI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V WDK + ++E+ I +++LGLNP +GQ++R+P+PE TEERR LVK+ H Y+E K Sbjct: 66 NVQPWDKGQLGAIEKAIRDADLGLNPSNDGQIVRVPLPELTEERRKDLVKLVHKYSEACK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I+VRNIRRDG++ L+K+ K+ + S+D + + E +Q+ TD IK ID K+ +IM Sbjct: 126 IAVRNIRRDGIEGLRKAEKNKEISQDEMHTQEKLVQESTDKFIKLIDEAIVSKEADIMQV 185 >gi|83955546|ref|ZP_00964177.1| ribosome recycling factor [Sulfitobacter sp. NAS-14.1] gi|83840190|gb|EAP79365.1| ribosome recycling factor [Sulfitobacter sp. NAS-14.1] Length = 187 Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats. Identities = 86/185 (46%), Positives = 122/185 (65%), Gaps = 1/185 (0%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 + ++D +++ RM I+ L+ + +LRTGR S SML+ V V+AYGS P+NQV V V Sbjct: 4 DFMLDTDDLERRMNGAITSLRTEFASLRTGRASASMLEPVMVDAYGSSTPINQVGTVNVP 63 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 EPRM+ ++VWDK +V VE+ I ES LG+NP + G ++ +P+PE EERR L KVA Y Sbjct: 64 EPRMVTINVWDKALVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRTQLTKVAGQY 123 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 AE +++S+RNIRRDGMD +KK++ G SED E ++Q +T+ I ID E K+ Sbjct: 124 AESARVSIRNIRRDGMDQIKKAKADG-MSEDDQKVWEGEVQDMTNKFIAQIDEQLESKQA 182 Query: 182 EIMHF 186 EIM Sbjct: 183 EIMQV 187 >gi|126737623|ref|ZP_01753353.1| ribosome recycling factor [Roseobacter sp. SK209-2-6] gi|126721016|gb|EBA17720.1| ribosome recycling factor [Roseobacter sp. SK209-2-6] Length = 203 Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats. Identities = 87/182 (47%), Positives = 125/182 (68%), Gaps = 1/182 (0%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 +D ++K RM ++ LK + +LRTGR S SML+ V V+AYGS P+NQV V V EPR Sbjct: 23 LDTDDLKRRMEGAMANLKTEFASLRTGRASGSMLEPVMVDAYGSMTPINQVGTVNVPEPR 82 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ ++VWDK +V VE+ I ES LG+NP + G ++ +P+PE EERR L KVA YAE Sbjct: 83 MVTINVWDKGLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRRELGKVAGQYAEH 142 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++S+RN+RRDGMD +KK++ G SED E ++Q++TD++IK +D+ E K+ EIM Sbjct: 143 ARVSIRNVRRDGMDQIKKAKADG-MSEDDQKFWEAEVQELTDASIKLVDTALETKQAEIM 201 Query: 185 HF 186 Sbjct: 202 QV 203 >gi|261866956|ref|YP_003254878.1| ribosome recycling factor [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412288|gb|ACX81659.1| ribosome recycling factor [Aggregatibacter actinomycetemcomitans D11S-1] Length = 185 Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ +DRM ++ LK + +RTGR PS+LD ++V+ YGS PL Q+ANV + R L Sbjct: 7 QDAEDRMEKSLDALKGHIAKIRTGRAQPSLLDAIQVDYYGSATPLRQLANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+V+D+ ++ +VE+ I S+LGLNP G +R+P+P TEERR L+K+ A E+ K+ Sbjct: 67 VTVFDRSLIQAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRELIKIVKAEGEQGKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD D +K K + SE+ E IQK+TDS IK +D +K+KE++ F Sbjct: 127 AIRNVRRDANDKIKALLKDKEISENDQHKAEEVIQKLTDSFIKKVDDVLADKEKELLDF 185 >gi|84500821|ref|ZP_00999056.1| ribosome recycling factor [Oceanicola batsensis HTCC2597] gi|84390888|gb|EAQ03306.1| ribosome recycling factor [Oceanicola batsensis HTCC2597] Length = 187 Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats. Identities = 86/182 (47%), Positives = 124/182 (68%), Gaps = 1/182 (0%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 +D +++ RM T+S L+ + +LRTGR S SML+ V V+AYGS P+NQV V V EPR Sbjct: 7 LDTDDLQRRMEGTMSNLRTEFASLRTGRASASMLEPVMVDAYGSMTPVNQVGTVNVPEPR 66 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ V+VWDK +V VE+ I ES LG+NP + G ++ +P+PE EERR L KVA YAE Sbjct: 67 MVTVNVWDKNLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRRELGKVAAQYAES 126 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++++RN+RRDGMD +KK++ G SED E+++Q +TD+ K +D E K++EIM Sbjct: 127 ARVAIRNVRRDGMDQIKKAKADG-LSEDDQKFWESEVQDLTDTYTKKVDEALEAKQEEIM 185 Query: 185 HF 186 Sbjct: 186 QV 187 >gi|83942310|ref|ZP_00954771.1| ribosome recycling factor [Sulfitobacter sp. EE-36] gi|83846403|gb|EAP84279.1| ribosome recycling factor [Sulfitobacter sp. EE-36] Length = 187 Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats. Identities = 85/185 (45%), Positives = 122/185 (65%), Gaps = 1/185 (0%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 + ++D +++ RM I+ L+ + +LRTGR S SML+ V V+AYGS P+NQV V V Sbjct: 4 DFMLDTDDLERRMNGAIASLRTEFASLRTGRASASMLEPVMVDAYGSSTPINQVGTVNVP 63 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 EPRM+ ++VWDK +V VE+ I ES LG+NP + G ++ +P+PE EERR L KVA Y Sbjct: 64 EPRMVTINVWDKALVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRTQLTKVAGQY 123 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 AE +++S+RN+RRDGMD +KK++ G SED E ++Q +T+ I ID E K+ Sbjct: 124 AESARVSIRNVRRDGMDQIKKAKADG-MSEDDQKVWEGEVQDMTNKFIAQIDEQLESKQA 182 Query: 182 EIMHF 186 EIM Sbjct: 183 EIMQV 187 >gi|297617174|ref|YP_003702333.1| ribosome recycling factor [Syntrophothermus lipocalidus DSM 12680] gi|297145011|gb|ADI01768.1| ribosome recycling factor [Syntrophothermus lipocalidus DSM 12680] Length = 188 Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats. Identities = 79/180 (43%), Positives = 121/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +++++ RM T+ L KD+ +LR GR +P+MLD + VE YG P+NQ+ N+ V EPRML Sbjct: 9 VKDVESRMKKTVEHLVKDLASLRAGRANPAMLDKITVEYYGQPTPINQLGNIGVPEPRML 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK + +E+ I +S+LG+NP +G V+RI +P TEERR +VK+ AE++K Sbjct: 69 VIQPWDKTAIPEIEKAILKSDLGVNPTNDGNVIRIAIPPLTEERRKEMVKMVRKRAEEAK 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RR+ D +K + K SED ++IQK+TD+TIK+ID + K+K+IM Sbjct: 129 VAVRNLRREANDEIKLAEKEKLISEDEAKKRLDEIQKLTDNTIKDIDKVLQTKEKDIMEV 188 >gi|170077573|ref|YP_001734211.1| ribosome recycling factor [Synechococcus sp. PCC 7002] gi|238689043|sp|B1XJ13|RRF_SYNP2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|169885242|gb|ACA98955.1| ribosome recycling factor [Synechococcus sp. PCC 7002] Length = 182 Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats. Identities = 71/180 (39%), Positives = 111/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++ M TI ++ TLRTGR S S+LD + VE YG+ PL +A+++ + + Sbjct: 3 LSELRENMQKTIEATQRSFNTLRTGRASASLLDRITVEYYGAETPLKSLASISTPDSSTI 62 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D+ ++ VER I S+LGL P +G +R+ +P T+ERR LVK A AE+ K Sbjct: 63 MIQPFDRGSLSDVERAISMSDLGLTPNNDGTNIRLNIPPLTKERRQELVKTAGKLAEEGK 122 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD +D ++K K+ SED SL++DIQK+TD ID + K+K+IM Sbjct: 123 VALRNIRRDAIDDVRKQEKNSDISEDESRSLQDDIQKVTDEFTTKIDDLLKIKEKDIMTV 182 >gi|291296165|ref|YP_003507563.1| ribosome recycling factor [Meiothermus ruber DSM 1279] gi|290471124|gb|ADD28543.1| ribosome recycling factor [Meiothermus ruber DSM 1279] Length = 185 Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats. Identities = 78/178 (43%), Positives = 112/178 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + M ++ L+ + T+RTGR +P++L+ +KVE YGS +PLNQV V+ +PR LV Sbjct: 7 NETRQHMQKSLEALEHHLTTMRTGRANPAILNNIKVEYYGSTMPLNQVGTVSSPDPRTLV 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V WD M+ +E+ I +S+LGLNP +G L I +P TEERR LVK YAE+++I Sbjct: 67 VQSWDPNMLKEIEKAIRDSDLGLNPTNKGDALYISIPPLTEERRRDLVKSVKQYAEEARI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +VRNIRR+ +D KK K SED + E +IQKITD + ID +K++EI+ Sbjct: 127 AVRNIRREALDKAKKLEKEKHLSEDDIKRAEAEIQKITDEFVHKIDEALHKKEQEILK 184 >gi|217970577|ref|YP_002355811.1| ribosome recycling factor [Thauera sp. MZ1T] gi|217507904|gb|ACK54915.1| ribosome recycling factor [Thauera sp. MZ1T] Length = 185 Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats. Identities = 79/179 (44%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +NI+ +M ++ LK D+ +RTGR +LD V VE YGS VP+NQVAN+T+++ R + Sbjct: 7 KNIEQKMLKSVEALKTDLAKVRTGRAHTGLLDHVMVEYYGSMVPVNQVANITLIDARTIG 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K M+ VER I +S+LGLNP G++LR+P+P TEERR L KV E +K+ Sbjct: 67 VQTWEKPMLGKVERAIRDSDLGLNPANMGELLRVPMPALTEERRRDLTKVVRHEGETAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRDG LK + K SED E++IQK+TD + ID +K++E+M Sbjct: 127 AIRNLRRDGNQQLKDAVKDKAISEDDERRGEDEIQKLTDRYVAEIDKLLAQKEQELMQI 185 >gi|157962701|ref|YP_001502735.1| ribosome recycling factor [Shewanella pealeana ATCC 700345] gi|189044076|sp|A8H6L3|RRF_SHEPA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|157847701|gb|ABV88200.1| ribosome recycling factor [Shewanella pealeana ATCC 700345] Length = 185 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 81/179 (45%), Positives = 117/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + + RM + K M +RTGR PS+LD ++V YGS PL QVA+V++ + R L Sbjct: 7 SDAQTRMDKCVESTKTQMAKVRTGRAHPSLLDTIQVPYYGSLTPLKQVASVSIGDARTLT 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 VSV+D+ M+A+VE+ I S+LGLNP+ G +RIP+P TEERR L+KV A AE +I Sbjct: 67 VSVFDRTMIAAVEKAIMSSDLGLNPMSAGATIRIPLPALTEERRKDLIKVVRAEAENGRI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD ++K+ K + +ED V E+D+QK+TD+ IK ID K+KE+M F Sbjct: 127 AIRNVRRDANSNVKELEKEKECTEDDVRRSEDDVQKLTDAHIKLIDEILAAKEKELMEF 185 >gi|68536249|ref|YP_250954.1| ribosome recycling factor [Corynebacterium jeikeium K411] gi|260578949|ref|ZP_05846852.1| ribosome recycling factor [Corynebacterium jeikeium ATCC 43734] gi|123650872|sp|Q4JV21|RRF_CORJK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|68263848|emb|CAI37336.1| frr [Corynebacterium jeikeium K411] gi|258602923|gb|EEW16197.1| ribosome recycling factor [Corynebacterium jeikeium ATCC 43734] Length = 185 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 77/180 (42%), Positives = 122/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++RM ++ ++D+ T+RTGR +PSM + V E YG P+ Q+A ++V EPRML Sbjct: 6 LLESEERMTSSVEHAREDLTTIRTGRANPSMFNGVVAEYYGVPTPITQMATISVPEPRML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +++ + ++E I S+LG+NP +GQVLR+ +P+ TEERR +VKVA + E +K Sbjct: 66 LIKPYEQSTMDAIENAIRNSDLGVNPTNDGQVLRVTIPQLTEERRKEMVKVAKSKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIRR GM+ L K +K G+A ED V + E D++KIT S ++ +DS E K+KE++ Sbjct: 126 IAIRNIRRKGMEQLGKIQKDGEAGEDEVRAAEKDLEKITHSYVEQVDSLVEAKEKELLEV 185 >gi|145295926|ref|YP_001138747.1| ribosome recycling factor [Corynebacterium glutamicum R] gi|166230782|sp|A4QF29|RRF_CORGB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|140845846|dbj|BAF54845.1| hypothetical protein [Corynebacterium glutamicum R] Length = 185 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 114/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++RM T+ ++D+ T+RTGR +P+M + V E YG P+ Q+++++V EPRML Sbjct: 6 LFEAEERMTATVEHTREDLTTIRTGRANPAMFNGVMAEYYGVPTPITQMSSISVPEPRML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ ++ + +E I S+LG+NP +GQVLR+ +P+ TEERR +VK+A E K Sbjct: 66 LIKPYEMSSMQVIENAIRNSDLGVNPTNDGQVLRVTIPQLTEERRKDMVKLAKGKGEDGK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIRR GMD LKK +K G A ED V + E ++ K+T + +D K+KE+M Sbjct: 126 IAIRNIRRKGMDQLKKLQKDGDAGEDEVQAAEKELDKVTAGFVAQVDEVVARKEKELMEV 185 >gi|259415740|ref|ZP_05739660.1| ribosome recycling factor [Silicibacter sp. TrichCH4B] gi|259347179|gb|EEW58956.1| ribosome recycling factor [Silicibacter sp. TrichCH4B] Length = 187 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 89/188 (47%), Positives = 125/188 (66%), Gaps = 3/188 (1%) Query: 1 MNQVIDLQ--NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 M++ +L ++K RM ++ LK + +LRTGR S SML+ V V+AYGS P+NQV V Sbjct: 1 MSEEFELDTDDLKRRMDGAMANLKTEFASLRTGRASASMLEPVMVDAYGSQTPINQVGTV 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 V EPRM+ ++VWDK +V VE+ I ES LG+NP + G ++ +P+PE EERR L KVA Sbjct: 61 NVPEPRMVTINVWDKGLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRRELTKVA 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 YAE +++SVRN+RRDGMD +KK++ G SED E ++Q +TD IK +D+ E Sbjct: 121 GQYAEHARVSVRNVRRDGMDQIKKAKSEG-MSEDDQKFWEAEVQDLTDKMIKAVDAALET 179 Query: 179 KKKEIMHF 186 K+ EIM Sbjct: 180 KQAEIMQV 187 >gi|237747788|ref|ZP_04578268.1| ribosome recycling factor [Oxalobacter formigenes OXCC13] gi|229379150|gb|EEO29241.1| ribosome recycling factor [Oxalobacter formigenes OXCC13] Length = 186 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 117/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + +M +I LK D+ +RTGR +LD V+V+ YGS ++QVAN+T+L+ R + Sbjct: 8 KSAEQKMNKSIESLKADLAKVRTGRAHTGILDHVEVDYYGSPTKISQVANITLLDARTIS 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K+MV ++E+ I +S+LGLNP G+++R+P P TEERR +VK+ E +K+ Sbjct: 68 VQPWEKKMVNAIEKAIRDSDLGLNPSTMGEIIRVPTPALTEERRKEMVKLVKTEGEDAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD + +KK K + SED ++DIQK+TD ++ ID +K+KE+M Sbjct: 128 AVRNIRRDANEAVKKMVKDKECSEDDERRSQDDIQKLTDKFVQQIDKLLADKEKEVMTV 186 >gi|225437014|ref|XP_002272648.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 280 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 67/179 (37%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +++K+RM TI ++ + ++RTGR +P++LD V+VE YG+ V L +A ++ + L+ Sbjct: 102 KDVKERMEKTIETVRTNFNSIRTGRANPAILDRVEVEYYGTPVSLKSIAQISTPDSASLL 161 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +DK + +E+ I S+LGL P +G+V+R+ +P+ T ERR L KV E+ K+ Sbjct: 162 VQPYDKSSLKVIEKAIVSSDLGLTPNNDGEVIRLSLPQLTSERRKELSKVVAKQTEEGKV 221 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD + +K K K SED V L +D+QK+ D +K I++ +++K+KE++ Sbjct: 222 ALRNIRRDALKAYEKLEKDKKLSEDNVKDLSSDLQKLIDEYMKKIETIYKQKEKELLKV 280 >gi|254510739|ref|ZP_05122806.1| ribosome recycling factor [Rhodobacteraceae bacterium KLH11] gi|221534450|gb|EEE37438.1| ribosome recycling factor [Rhodobacteraceae bacterium KLH11] Length = 187 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 87/182 (47%), Positives = 125/182 (68%), Gaps = 1/182 (0%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 +D ++K RM ++ L+ + +LRTGR S SML+ V V+AYGS P+NQV V V EPR Sbjct: 7 LDTDDLKRRMDGAMANLRTEFASLRTGRASASMLEPVMVDAYGSMTPINQVGTVNVPEPR 66 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ V+VWDK +V VE+ I ES LG+NP + G ++ +P+PE EERR L KVA YAE Sbjct: 67 MVTVNVWDKGLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRRELGKVAGQYAES 126 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++S+RN+RRDGMD +KK++ G SED E+++Q++TD+ IK++D E K+ EIM Sbjct: 127 ARVSIRNVRRDGMDQIKKAKADG-MSEDDQKFWESEVQELTDAMIKSVDEALETKQAEIM 185 Query: 185 HF 186 Sbjct: 186 QV 187 >gi|311105986|ref|YP_003978839.1| ribosome recycling factor [Achromobacter xylosoxidans A8] gi|310760675|gb|ADP16124.1| ribosome recycling factor [Achromobacter xylosoxidans A8] Length = 186 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 73/179 (40%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM ++ LK ++ +RTGR +LD V+VE YGS VP++QV NV +++ R + Sbjct: 8 KSAEARMAKSLDTLKTNLAKIRTGRAHTGILDHVQVEYYGSPVPISQVGNVNLVDARTIS 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V ++K M A++E+ I ES+LGLNP+ G +R+P+P TEERR L KV + E +K+ Sbjct: 68 VQPYEKSMAAAIEKAIRESDLGLNPMSMGDTIRVPMPALTEERRRDLTKVVRSEGEDAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RR+ + LKK K + SED ++D+QK+TD ++ ID +K+ EIM Sbjct: 128 AVRNLRREANEALKKLVKDKEISEDDERRSQDDVQKLTDRSVAEIDKMVTQKEAEIMTV 186 >gi|299134998|ref|ZP_07028189.1| ribosome recycling factor [Afipia sp. 1NLS2] gi|298589975|gb|EFI50179.1| ribosome recycling factor [Afipia sp. 1NLS2] Length = 187 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 96/182 (52%), Positives = 126/182 (69%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D+ ++K RM LK ++ LRTGR + SM++ V+VEAYGSH+PLNQVA V+V EPR Sbjct: 6 FDINDLKRRMDGAKDSLKHELGGLRTGRAAISMVEPVQVEAYGSHMPLNQVATVSVPEPR 65 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 +L V VWDK MV +VE I SNLGLNP EGQV+R+ +PE EERR LVKVAH YAE Sbjct: 66 LLSVQVWDKSMVKAVETAIVNSNLGLNPATEGQVIRLRIPELNEERRKELVKVAHKYAEA 125 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +K++VR++RRDG+D +KK K + SED +IQK+TD+ I +ID K+KEI+ Sbjct: 126 AKVAVRHVRRDGLDIVKKLEKDRQMSEDDQERASGEIQKVTDAAIADIDKLLATKEKEIL 185 Query: 185 HF 186 Sbjct: 186 TV 187 >gi|310816031|ref|YP_003963995.1| ribosome recycling factor [Ketogulonicigenium vulgare Y25] gi|308754766|gb|ADO42695.1| ribosome recycling factor [Ketogulonicigenium vulgare Y25] Length = 187 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 82/182 (45%), Positives = 122/182 (67%), Gaps = 1/182 (0%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 +D ++ RM I+ L+ + +LRTGR S SML+ + V+AYG P+NQ+ + V EPR Sbjct: 7 LDTDDLTRRMDGAIAALRTEFASLRTGRASGSMLEPIVVDAYGQTTPINQLGTINVPEPR 66 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ ++VWDK MV+ VE+ I +S LG+NP G ++ +P+PE EERR L KVA YAE Sbjct: 67 MVTINVWDKGMVSKVEKAIRDSGLGINPQTNGTIIMLPIPELNEERRRELTKVAAGYAEH 126 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++++VRN+RRDGMD +KK++ G SED V E+++Q++TD IK +D + K+ EIM Sbjct: 127 ARVAVRNLRRDGMDKIKKAKSDG-LSEDDVKFWESEVQELTDKFIKLVDQTLDTKQAEIM 185 Query: 185 HF 186 Sbjct: 186 QV 187 >gi|145628296|ref|ZP_01784097.1| ribosome recycling factor [Haemophilus influenzae 22.1-21] gi|145638390|ref|ZP_01794000.1| ribosome recycling factor [Haemophilus influenzae PittII] gi|144980071|gb|EDJ89730.1| ribosome recycling factor [Haemophilus influenzae 22.1-21] gi|145272719|gb|EDK12626.1| ribosome recycling factor [Haemophilus influenzae PittII] gi|309751530|gb|ADO81514.1| Ribosome releasing factor [Haemophilus influenzae R2866] Length = 185 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ +DRM ++ LK + +RTGR PS+LD ++VE YG+ PL Q+ANV + R L Sbjct: 7 KDAQDRMEKSLEALKGHISKIRTGRAQPSLLDAIQVEYYGAATPLRQLANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+V+D+ ++++VE+ I S+LGLNP G +R+P+P TEERR L+K+ E+ K+ Sbjct: 67 VTVFDRSLISAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIVKGEGEQGKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD D +K K + SE+ E +IQKITD IK +D +K+KE+M F Sbjct: 127 AIRNVRRDANDKIKALLKDKEISENEQHKAEEEIQKITDIYIKKVDEVLTDKEKELMDF 185 >gi|162147934|ref|YP_001602395.1| ribosome recycling factor [Gluconacetobacter diazotrophicus PAl 5] gi|209542552|ref|YP_002274781.1| ribosome recycling factor [Gluconacetobacter diazotrophicus PAl 5] gi|189044057|sp|A9HKW6|RRF_GLUDA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|161786511|emb|CAP56093.1| Ribosome recycling factor [Gluconacetobacter diazotrophicus PAl 5] gi|209530229|gb|ACI50166.1| ribosome recycling factor [Gluconacetobacter diazotrophicus PAl 5] Length = 188 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 84/180 (46%), Positives = 117/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++ RM + L++D LR+GR SP++++ V+VEAYG VPL QV ++ V E RML Sbjct: 9 LDDLTRRMDGALESLRRDFAGLRSGRASPALIEPVRVEAYGGEVPLTQVGSIAVPEARML 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V VWD+ +V +VER I +S LGLNP +GQ +R+P+P+ TEERR L + A Y+E +K Sbjct: 69 TVQVWDRSLVGAVERAIRDSGLGLNPAADGQTVRVPIPQLTEERRGELARTAGKYSENAK 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I+VR +RRDGMD K K G S+D V + IQK+TD +K ID EK++EI Sbjct: 129 IAVRGVRRDGMDQTKAQEKKGDISQDDVKVWSDAIQKLTDQYVKRIDEMLAEKEREIKQV 188 >gi|33152634|ref|NP_873987.1| ribosome recycling factor [Haemophilus ducreyi 35000HP] gi|38372405|sp|Q7VL83|RRF_HAEDU RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|33148858|gb|AAP96376.1| ribosome recycling factor [Haemophilus ducreyi 35000HP] Length = 185 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM ++ LK + +RTGR PS+LD ++VE YGS PL QVANV + R L Sbjct: 7 KDTQQRMEKSLEALKSHISKIRTGRAQPSLLDGIQVEYYGSATPLRQVANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+V+D+ ++++VE+ I S+LGLNP G +R+P+P TEERR L+K+ E+ KI Sbjct: 67 VNVFDRSLISAVEKAILTSDLGLNPSSAGATIRVPLPALTEERRRDLIKIVKNEGEQGKI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD D +K K + SED +++IQKITD +K +D K+KE++ F Sbjct: 127 AIRNVRRDANDQIKALLKDKEISEDEERKAQDEIQKITDGYVKKVDEVLMAKEKELLDF 185 >gi|302389812|ref|YP_003825633.1| ribosome recycling factor [Thermosediminibacter oceani DSM 16646] gi|302200440|gb|ADL08010.1| ribosome recycling factor [Thermosediminibacter oceani DSM 16646] Length = 185 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 78/179 (43%), Positives = 120/179 (67%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++RM + LK ++ +R GR S ++L+ V V+ YG P+NQVA V+V EPRM++ Sbjct: 7 KETEERMKKVLGNLKSELAAIRAGRASTALLEKVFVDYYGVPTPVNQVATVSVPEPRMIL 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + WD +M++++E+ I +S+LGL P +G+V+R+ +PE T ERR LVK+A AE +K+ Sbjct: 67 IQPWDVKMLSAIEKAILKSDLGLTPTSDGKVIRLILPELTSERRKELVKMAKKKAEDAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 VRNIRRD + +KK K+G+ SED + +IQK+TD+ I+ ID F K+KEIM Sbjct: 127 LVRNIRRDANELVKKMEKNGEISEDDSKRSQEEIQKLTDNYIEEIDKAFTNKEKEIMEV 185 >gi|300783895|ref|YP_003764186.1| ribosome recycling factor [Amycolatopsis mediterranei U32] gi|299793409|gb|ADJ43784.1| ribosome recycling factor [Amycolatopsis mediterranei U32] Length = 187 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 71/180 (39%), Positives = 116/180 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++M +S K ++ ++RTGR S +M + VE YGS PLNQ+A+V V E RM Sbjct: 8 LLDAEEKMEKAVSVAKDELQSVRTGRASSAMFSRIVVEYYGSPTPLNQLASVNVPEARMA 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D+ + ++E+ I ES+LG+NP +GQV+RI +P+ TEERR +VKVA E ++ Sbjct: 68 LIKPYDQSQLNAIEKAIRESDLGVNPSNDGQVIRIVIPQLTEERRKEMVKVAKGKGEDAR 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+R+IRR D L + K G+A ED VA E ++Q +TD+ + +D + K+ E++ Sbjct: 128 VSIRSIRRKAKDELDRIAKDGEAGEDDVARAEKELQNLTDTYVHKVDELIKHKEAELLEV 187 >gi|327480157|gb|AEA83467.1| ribosome recycling factor [Pseudomonas stutzeri DSM 4166] Length = 185 Score = 238 bits (609), Expect = 2e-61, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 107/179 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ ++RM T+ L +RTGR PS+LD V V YG+ PL QVANV + R L Sbjct: 7 QDAQERMKKTLEALDHAFAKIRTGRAHPSILDSVMVSYYGADTPLRQVANVVAEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DK M+ +VE+ I S+LGLNP G +R+P+P TEE R K A A AE +++ Sbjct: 67 LTVFDKSMIQAVEKAIMTSDLGLNPATAGTTIRVPMPALTEETRKGYTKQARAEAENARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD + LK K + SED ++D+QK+TD + ID E K+ ++M Sbjct: 127 AVRNIRRDAIAQLKDLVKEKEISEDEERRGQDDVQKLTDKYVAEIDKALEGKEADLMAV 185 >gi|315633607|ref|ZP_07888897.1| ribosome recycling factor [Aggregatibacter segnis ATCC 33393] gi|315477649|gb|EFU68391.1| ribosome recycling factor [Aggregatibacter segnis ATCC 33393] Length = 185 Score = 238 bits (609), Expect = 2e-61, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ +DRM ++ LK + +RTGR PS+LD ++V+ YGS PL Q+ANV + R L Sbjct: 7 KDAQDRMEKSLEALKGHIAKIRTGRAQPSLLDAIQVDYYGSATPLRQLANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+V+D+ ++ +VE+ I S+LGLNP G +R+P+P TEERR L+K+ + E+ K+ Sbjct: 67 VTVFDRSLIQAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIVKSEGEQGKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD D +K K + SE+ E +IQ+ITD IK +D EK+KE++ F Sbjct: 127 AIRNVRRDANDKIKALLKDKEISENDQHKAETEIQQITDKFIKKVDEVLAEKEKELLDF 185 >gi|71907375|ref|YP_284962.1| ribosome recycling factor [Dechloromonas aromatica RCB] gi|71846996|gb|AAZ46492.1| ribosome recycling factor [Dechloromonas aromatica RCB] Length = 198 Score = 238 bits (609), Expect = 2e-61, Method: Composition-based stats. Identities = 70/179 (39%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + + +M ++ L+ D+ +RTGR +LD V+V+ YGS VP+NQVANVT+++ R + Sbjct: 20 KTAEGKMQKSLEALRLDLQKVRTGRAHTGLLDHVQVDYYGSMVPVNQVANVTLVDARTIG 79 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K M+ VE+ I + +LGLNP +G ++R+P+P TEERR ++K+ E K+ Sbjct: 80 VQPWEKGMLQKVEKAIRDCDLGLNPASQGDLIRVPMPALTEERRKEMIKIVRTEGEGVKV 139 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD + HLK + K G+ ED ++D+QK+TD I +D K+ E+M Sbjct: 140 AIRNLRRDAITHLKDALKKGEIPEDDERKAQDDVQKLTDRYIVEVDKMLATKEAELMQV 198 >gi|74316806|ref|YP_314546.1| ribosome recycling factor [Thiobacillus denitrificans ATCC 25259] gi|123612166|sp|Q3SKN6|RRF_THIDA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|74056301|gb|AAZ96741.1| ribosome recycling factor [Thiobacillus denitrificans ATCC 25259] Length = 189 Score = 238 bits (609), Expect = 2e-61, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ + +MG T+ LK D+ +RTGR +LD V V+ YG+ P+ QVANV++++ R L Sbjct: 11 QSAEQKMGKTLEALKNDLAKVRTGRAHAGILDHVLVDYYGNPTPVPQVANVSLVDSRTLG 70 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V ++K MV +E+ I + +LGLNP G V+R+P+P TEERR L+KV AE +++ Sbjct: 71 VQPYEKNMVGKIEKAIRDGDLGLNPATHGDVIRVPMPALTEERRRDLIKVVRNEAEGARV 130 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD LK K+ A+ED ++++QK+TD I ID EK+K+++ Sbjct: 131 AVRNIRRDANASLKDMVKAKTATEDEERRTQDEVQKLTDKFIGEIDKMLAEKEKDLLAV 189 >gi|91775880|ref|YP_545636.1| ribosome recycling factor [Methylobacillus flagellatus KT] gi|123254405|sp|Q1H142|RRF_METFK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|91709867|gb|ABE49795.1| ribosome recycling factor [Methylobacillus flagellatus KT] Length = 185 Score = 238 bits (609), Expect = 2e-61, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 112/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + +M +I LK D+ +RTGR +LD V+VE YGS V +NQVA+V++ + R L Sbjct: 7 NTAEQKMQKSIEALKADLSKVRTGRAHTGLLDHVQVEYYGSMVAINQVASVSLGDARTLN 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V ++K M VE+ I +++LGLNP G ++R+P+P TEERR LVKV + AE +K+ Sbjct: 67 VQAYEKNMTPKVEKAIRDADLGLNPATNGDIIRVPMPMLTEERRRDLVKVVRSEAENAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD D LKK K + SED ++++QK+TD + ID + K+ E+M Sbjct: 127 AIRNVRRDANDALKKLVKDKEISEDDERRAQDEVQKLTDKFVAEIDKLLQTKEAELMAV 185 >gi|83951884|ref|ZP_00960616.1| ribosome recycling factor [Roseovarius nubinhibens ISM] gi|83836890|gb|EAP76187.1| ribosome recycling factor [Roseovarius nubinhibens ISM] Length = 187 Score = 238 bits (609), Expect = 2e-61, Method: Composition-based stats. Identities = 82/182 (45%), Positives = 119/182 (65%), Gaps = 1/182 (0%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 ++ ++ RM ++ L+ + +LRTGR S SML+ V V+AYG P+NQV V V EPR Sbjct: 7 LNTDDLTRRMDGAMASLRTEFASLRTGRASASMLEPVMVDAYGQQTPINQVGTVNVPEPR 66 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ ++VWDK +V VE+ I ES LG+NP + G ++ +P+PE EERR L KVA YAE Sbjct: 67 MVTINVWDKGLVNKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRRELGKVASQYAES 126 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++++RN+RRDGMD +KK++ G SED E +Q++TDS I +D E K+ EIM Sbjct: 127 ARVAIRNVRRDGMDQIKKAKADG-MSEDDQKFWETSVQELTDSFIAKVDEALEHKQAEIM 185 Query: 185 HF 186 Sbjct: 186 QV 187 >gi|293374703|ref|ZP_06621011.1| ribosome recycling factor [Turicibacter sanguinis PC909] gi|325840609|ref|ZP_08167090.1| ribosome recycling factor [Turicibacter sp. HGF1] gi|292646617|gb|EFF64619.1| ribosome recycling factor [Turicibacter sanguinis PC909] gi|325490258|gb|EGC92591.1| ribosome recycling factor [Turicibacter sp. HGF1] Length = 185 Score = 238 bits (609), Expect = 2e-61, Method: Composition-based stats. Identities = 83/180 (46%), Positives = 122/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L N + RM I LK++ LRTGR S ++LD ++V+ YG P+NQ+A VTV EPR L Sbjct: 6 LSNAEARMSKAIDSLKREFSVLRTGRASGALLDNIQVDYYGMPSPINQMAQVTVPEPRQL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV +DK M+ ++ER I+E+N+GL P +G+V+R+ VP TEERR L K +AE +K Sbjct: 66 VVKPYDKSMLQAIERAINEANIGLTPNNDGEVIRLNVPALTEERRRELAKKVKGFAEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RN+RRD D LKK +K+G+ +ED + D+QK+TD IK +D+ +EK+K+IM Sbjct: 126 VAIRNVRRDANDELKKLQKNGEITEDALKGYTEDVQKLTDKKIKEVDATADEKEKDIMSI 185 >gi|319407371|emb|CBI81022.1| Ribosome recycling factor [Bartonella sp. 1-1C] Length = 186 Score = 238 bits (609), Expect = 2e-61, Method: Composition-based stats. Identities = 99/186 (53%), Positives = 130/186 (69%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ + + ++K RM IS K ++ +LRTGR S S+L+ + VEAYGS VP+NQVANV+V Sbjct: 1 MDITLIMDDLKRRMEGAISSFKHELGSLRTGRASASLLEHLTVEAYGSVVPINQVANVSV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E RML VSVWDK MV +VER I +S LGLNPI +G LRIP+PE EERR LVK+A+ Sbjct: 61 PESRMLSVSVWDKTMVGAVERAIRDSGLGLNPITDGVNLRIPLPELNEERRKELVKIAYQ 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 Y E+++I+ R++RRDGMD+LKK K GK +D SL +QK+TD+TI ID K+ Sbjct: 121 YTEQARIAARHVRRDGMDNLKKLEKEGKIGQDEARSLSEKVQKLTDTTIAEIDKILVLKE 180 Query: 181 KEIMHF 186 EIM Sbjct: 181 TEIMQV 186 >gi|149915215|ref|ZP_01903743.1| ribosome recycling factor [Roseobacter sp. AzwK-3b] gi|149810936|gb|EDM70775.1| ribosome recycling factor [Roseobacter sp. AzwK-3b] Length = 189 Score = 238 bits (609), Expect = 2e-61, Method: Composition-based stats. Identities = 82/188 (43%), Positives = 120/188 (63%), Gaps = 3/188 (1%) Query: 1 MNQVIDLQ--NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 M + +L +++ RM + LK + +LRTGR S S+L+ V V+AYG P+NQV V Sbjct: 3 MAEEFELDTGDLQRRMEGAMGALKTEFASLRTGRASASILEPVMVDAYGQRTPINQVGTV 62 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 V E RM+ ++VWDK +V VE+ I ES LG+NP + G ++ +P+PE EERR L KVA Sbjct: 63 NVPESRMVTINVWDKGLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRKELTKVA 122 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 YAE ++++VRN+RRDGMD +KK++ G SED E+++Q +T+ I +D E Sbjct: 123 AQYAEHARVAVRNVRRDGMDQIKKAKADG-MSEDDQKFWESEVQDLTNKFIAQVDEALET 181 Query: 179 KKKEIMHF 186 K+ EIM Sbjct: 182 KQAEIMQV 189 >gi|288958464|ref|YP_003448805.1| ribosome recycling factor [Azospirillum sp. B510] gi|288910772|dbj|BAI72261.1| ribosome recycling factor [Azospirillum sp. B510] Length = 185 Score = 238 bits (609), Expect = 2e-61, Method: Composition-based stats. Identities = 86/181 (47%), Positives = 125/181 (69%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 DL ++K RM + +K++ LRTGR S ++L+ V VEAYGS + L +VA V+V EPR+ Sbjct: 5 DLSDLKRRMEGALDSFRKELGGLRTGRASSNLLEPVMVEAYGSRMHLREVATVSVPEPRL 64 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 + V VWD+ M +VE+ I +S LGLNP EGQV+R+P+P+ T+ERR L KVAH YAE+ Sbjct: 65 ISVQVWDRGMTKAVEKAIRDSGLGLNPQAEGQVIRVPLPDLTQERRAELAKVAHKYAEQC 124 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++++RNIRRDGMD LKK+ K+ + ++D + +Q +TD IK +D +K+KEIM Sbjct: 125 RVAIRNIRRDGMDGLKKAEKASEITQDEHKVQADKVQVLTDQHIKLVDDSLAQKEKEIMQ 184 Query: 186 F 186 Sbjct: 185 V 185 >gi|229824123|ref|ZP_04450192.1| hypothetical protein GCWU000282_01427 [Catonella morbi ATCC 51271] gi|229786477|gb|EEP22591.1| hypothetical protein GCWU000282_01427 [Catonella morbi ATCC 51271] Length = 191 Score = 238 bits (609), Expect = 2e-61, Method: Composition-based stats. Identities = 72/179 (40%), Positives = 117/179 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +++ K RM T+ ++++ ++R GR + S+LD + VE YG PLNQ+A++T+ E RML Sbjct: 12 IKDTKQRMQKTVDAYQRELGSIRAGRANASILDRISVEYYGVPTPLNQLASITIPEARML 71 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK + +E+ I S++G+ P +G V+R+ +P T+ERR L K E +K Sbjct: 72 LITPYDKGTLGDIEKAILMSDVGITPSNDGSVVRLVIPALTQERRQELAKTVGKEQEGAK 131 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 + VRNIRRD +DH KK+ K+ + +ED + LE DIQK+TD +K I+ EK+KEI+ Sbjct: 132 VRVRNIRRDAIDHAKKAEKNKEITEDDLKGLEKDIQKLTDDFVKEIEKLTAEKEKEILE 190 >gi|307822433|ref|ZP_07652665.1| ribosome recycling factor [Methylobacter tundripaludum SV96] gi|307736999|gb|EFO07844.1| ribosome recycling factor [Methylobacter tundripaludum SV96] Length = 185 Score = 238 bits (609), Expect = 2e-61, Method: Composition-based stats. Identities = 74/177 (41%), Positives = 112/177 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ RM +I LK + +RTGR PS+LD + V YG+ L+QVAN+ V + R L Sbjct: 7 QDASTRMSKSIEALKHEFSKIRTGRAHPSLLDQINVSYYGTESSLSQVANIAVEDARTLT 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++ W+K MV ++E+ I +S+LGLNP G V+RIP+P TEERR +LVKV AE ++ Sbjct: 67 ITPWEKGMVQAIEKAIMKSDLGLNPATNGMVIRIPLPPLTEERRRSLVKVVKNEAENGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++RNIRRD +K++ K SED + E IQK+TD +K+++ E K+ +++ Sbjct: 127 AIRNIRRDANSAIKEALKEKMISEDEARAAEEKIQKLTDQYVKDVEKLLEAKEADLL 183 >gi|127513560|ref|YP_001094757.1| ribosome recycling factor [Shewanella loihica PV-4] gi|166231226|sp|A3QGA0|RRF_SHELP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|126638855|gb|ABO24498.1| ribosome recycling factor [Shewanella loihica PV-4] Length = 185 Score = 238 bits (609), Expect = 2e-61, Method: Composition-based stats. Identities = 79/179 (44%), Positives = 111/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ K RM + K M +RTGR PS+LD +KV YG+ PL QV NV++ + R L Sbjct: 7 EDAKSRMAKCVEATKNQMAKVRTGRAHPSLLDSIKVPYYGTPTPLKQVGNVSIEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D M+A+VE+ I S+LGLNP+ G +RIP+P TEERR L+KV A AE +I Sbjct: 67 ITVFDTTMIAAVEKAIMSSDLGLNPMSAGTTIRIPLPALTEERRKDLIKVVRAEAENGRI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD +K K + +ED V E++IQK TD+ IK ID K+ E+M Sbjct: 127 AVRNVRRDANSDVKALEKEKECTEDDVRRTEDEIQKFTDAHIKQIDEILTAKEAELMEV 185 >gi|167854950|ref|ZP_02477725.1| ribosome releasing factor [Haemophilus parasuis 29755] gi|219870409|ref|YP_002474784.1| ribosome recycling factor [Haemophilus parasuis SH0165] gi|254809514|sp|B8F3D4|RRF_HAEPS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|167853907|gb|EDS25146.1| ribosome releasing factor [Haemophilus parasuis 29755] gi|219690613|gb|ACL31836.1| ribosome recycling factor [Haemophilus parasuis SH0165] Length = 185 Score = 238 bits (609), Expect = 2e-61, Method: Composition-based stats. Identities = 77/179 (43%), Positives = 116/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK + +RTGR PS+LD ++VE YGS PL Q+ANV + R L Sbjct: 7 KDTQERMEKSLEALKGHISKIRTGRAQPSLLDAIQVEYYGSATPLRQLANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+V+D+ ++++VE+ I S+LGLNP G +R+P+P TEERR L+K+ E+ K+ Sbjct: 67 VTVFDRSLISAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIVKGEGEQGKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RNIRRD D +K K + SE+ ++DIQKITD IK +D +K+KE+M F Sbjct: 127 SIRNIRRDANDKIKTLEKEKQISENDERKAQDDIQKITDIYIKKVDEILADKEKELMDF 185 >gi|259907545|ref|YP_002647901.1| ribosome recycling factor [Erwinia pyrifoliae Ep1/96] gi|224963167|emb|CAX54651.1| Ribosome recycling factor [Erwinia pyrifoliae Ep1/96] gi|283477385|emb|CAY73301.1| frr [Erwinia pyrifoliae DSM 12163] Length = 185 Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM + K + +RTGR SPS+LD + V+ YGS PL +A+VTV + R L Sbjct: 7 KDAETRMEKCVEAFKNHISKIRTGRASPSILDGIMVDYYGSATPLRLLASVTVEDSRTLK 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ + A+VE+ I S+LGLNP G +R+P+P TEERR L+KV AE+ ++ Sbjct: 67 INVFDRSIGAAVEKAIMTSDLGLNPSSAGSDIRVPLPALTEERRKDLIKVVRGEAEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRN+RRD D LK K + SED + D+QK+TD IK +D+ +K+ E+M F Sbjct: 127 SVRNVRRDANDKLKALLKDKEISEDDDRRAQEDVQKMTDIFIKKMDASLADKETELMDF 185 >gi|32400999|gb|AAP80705.1| ribosome recycling factor [Griffithsia japonica] Length = 230 Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats. Identities = 69/179 (38%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + + RM TI +K ++RTGR SPS+LD ++V YG+ PLN +A V+V LV Sbjct: 52 EKSEARMQKTIDSVKSAFNSVRTGRASPSLLDRIQVNYYGADTPLNSLATVSVSGTSTLV 111 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +DK ++ +ER + ES++GL P +G +R+ +P+ T+ERR LVK + AE ++ Sbjct: 112 VEPYDKSCISDIERSLMESDIGLTPNSDGSTIRLSIPQLTKERRSQLVKQVKSMAEDGRV 171 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD +D +KK K + +D +L++ +QK+TD +K I+S +++K+++IM Sbjct: 172 AIRNIRRDAVDSIKKLEKKSELGKDESKTLQDRVQKLTDKYVKTIESVYKQKEEDIMKV 230 >gi|54026099|ref|YP_120341.1| ribosome recycling factor [Nocardia farcinica IFM 10152] gi|60390236|sp|Q5YS64|RRF_NOCFA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|54017607|dbj|BAD58977.1| putative ribosome recycling factor [Nocardia farcinica IFM 10152] Length = 185 Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats. Identities = 69/180 (38%), Positives = 110/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++M +S K D+ T+RTGR +P M V V+ YGS P+ Q++++TV EPRM+ Sbjct: 6 LFDAEEKMEKAVSVAKDDLGTIRTGRANPGMFARVVVDYYGSPTPVTQMSSITVPEPRMV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ ++ + ++E I S+LG+NP G +LRI +P+ TEERR LVK A E +K Sbjct: 66 VIKPYEAGQLGAIETAIRNSDLGVNPTNNGDILRITIPQLTEERRRELVKQAKGKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RN+RR MD L + +K G+A ED V E ++ K T + ID + K+ E++ Sbjct: 126 VAIRNVRRKAMDELARIQKDGEAGEDEVGRAEKELDKTTAKYVSQIDELVKHKEAELLEV 185 >gi|85703599|ref|ZP_01034703.1| ribosome recycling factor [Roseovarius sp. 217] gi|85672527|gb|EAQ27384.1| ribosome recycling factor [Roseovarius sp. 217] Length = 187 Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats. Identities = 84/182 (46%), Positives = 121/182 (66%), Gaps = 1/182 (0%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 ID +++ RM +S LK + +LRTGR S SML+ + V+AYG P+NQV V V EPR Sbjct: 7 IDTGDLERRMEGAMSALKTEFASLRTGRASASMLEPIMVDAYGQKTPINQVGTVNVPEPR 66 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ ++VWDK +V VE+ I ES LG+NP + G ++ +P+PE E+RR L KVA YAE Sbjct: 67 MVTINVWDKGLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEQRRKELTKVAAQYAEH 126 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++++VRN+RRDGMD +KK++ G SED E ++Q +TD IK++D + K+ EIM Sbjct: 127 ARVAVRNVRRDGMDQIKKAKADG-MSEDDQKFWEGEVQSLTDRFIKHVDEVLDGKQAEIM 185 Query: 185 HF 186 Sbjct: 186 QV 187 >gi|92112699|ref|YP_572627.1| ribosome recycling factor [Chromohalobacter salexigens DSM 3043] gi|122420714|sp|Q1R030|RRF_CHRSD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|91795789|gb|ABE57928.1| ribosome recycling factor [Chromohalobacter salexigens DSM 3043] Length = 185 Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 106/179 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ RM ++ L + +RTGR PS+LD V VE YGS +PLNQVA+V V + R L Sbjct: 7 KDADARMKKSVEALNANFHKIRTGRAHPSLLDAVTVEYYGSEMPLNQVASVNVEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K MV VE+ I S+LGLNP G V+R+P+P TEE R +K A AE +++ Sbjct: 67 VVPWEKSMVPKVEKAIMTSDLGLNPAAAGNVIRVPLPPLTEETRRNYIKQARGEAENARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD LK K + +ED ++IQK+TD + ID E K+ +++ Sbjct: 127 AVRNVRRDANGDLKSLLKEKEITEDEERHAIDEIQKLTDKYVTEIDKLLETKEHDLLQV 185 >gi|19553226|ref|NP_601228.1| ribosome recycling factor [Corynebacterium glutamicum ATCC 13032] gi|62390862|ref|YP_226264.1| ribosome recycling factor [Corynebacterium glutamicum ATCC 13032] gi|24418653|sp|Q8NP03|RRF_CORGL RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|21324793|dbj|BAB99416.1| Ribosome recycling factor [Corynebacterium glutamicum ATCC 13032] gi|41326201|emb|CAF20363.1| RIBOSOME RECYCLING FACTOR [Corynebacterium glutamicum ATCC 13032] Length = 185 Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats. Identities = 74/180 (41%), Positives = 113/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++RM T+ ++D+ T+RTGR +P+M + V E YG P+ Q++ +TV EPRML Sbjct: 6 LFEAEERMTATVEHTREDLTTIRTGRANPAMFNGVMAEYYGVPTPITQMSGITVPEPRML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ ++ + +E I S+LG+NP +GQVLR+ +P+ TEERR +VK+A E K Sbjct: 66 LIKPYEMSSMQVIENAIRNSDLGVNPTNDGQVLRVTIPQLTEERRKDMVKLAKGKGEDGK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIRR GMD LKK +K G A ED V + E ++ K+T + +D K+KE+M Sbjct: 126 IAIRNIRRKGMDQLKKLQKDGDAGEDEVQAAEKELDKVTAGFVAQVDEVVARKEKELMEV 185 >gi|296284729|ref|ZP_06862727.1| ribosome recycling factor [Citromicrobium bathyomarinum JL354] Length = 185 Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats. Identities = 94/180 (52%), Positives = 124/180 (68%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D +I+ RM + LK D+ LRTGR + S+LD V VE YGS +PLNQVA V+ EPR Sbjct: 4 YDKSDIERRMQGAVESLKGDLAGLRTGRANTSLLDPVVVEVYGSMMPLNQVATVSAPEPR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 ML V VWDK V++VE+GI +NLGLNP+ +GQ LRIP+P+ TEERR L KVA Y E Sbjct: 64 MLSVQVWDKGNVSAVEKGIAHANLGLNPMQDGQTLRIPMPDLTEERRKDLAKVADKYGES 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +KI++RN+RRDGM+ LK+ K SED E+++QK+TD + + D+ E KKKEI+ Sbjct: 124 AKIAIRNVRRDGMEALKEDEKKKDISEDDRKRSEDEVQKLTDKYVADTDTAVEHKKKEIL 183 >gi|332705597|ref|ZP_08425673.1| ribosome recycling factor [Lyngbya majuscula 3L] gi|332355389|gb|EGJ34853.1| ribosome recycling factor [Lyngbya majuscula 3L] Length = 182 Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats. Identities = 67/180 (37%), Positives = 110/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++ M + ++ T+RTGR S S+LD V VE YG+ PL +AN+ + + Sbjct: 3 LADVETSMQKAVEATQRAFNTIRTGRASTSLLDRVMVEYYGTPTPLKSLANINTPDASTI 62 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + +DK M++ +E+ I S+L L P G+V+R+ +P T ERR VK+A +AE+ + Sbjct: 63 TIQPYDKSMLSQIEKAITLSDLDLPPNNNGEVVRLNIPPLTSERRKEFVKMASKFAEEGR 122 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+RNIRRD +D ++K K+ + SED L+++IQK+T+ K +D F K+K+IM Sbjct: 123 VSIRNIRRDAVDSVRKQDKNKEISEDESRDLQDEIQKLTNKYTKKVDEVFAAKEKDIMTV 182 >gi|283798096|ref|ZP_06347249.1| ribosome recycling factor [Clostridium sp. M62/1] gi|291074241|gb|EFE11605.1| ribosome recycling factor [Clostridium sp. M62/1] gi|295091732|emb|CBK77839.1| ribosome recycling factor [Clostridium cf. saccharolyticum K10] Length = 184 Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats. Identities = 75/176 (42%), Positives = 110/176 (62%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 +++M + L + ++R GR +P +LD ++V+ YG+ PL QVAN++V EPRM+ + Sbjct: 9 EEKMDKSYDALLNEFSSIRAGRANPHVLDKLRVDYYGAPTPLQQVANISVPEPRMIQIQP 68 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 W+K +V ++E+ I S+LG+NP +G V+R+ PE TEERR L K E +K++VR Sbjct: 69 WEKSLVKAIEKAILTSDLGINPTNDGSVIRLIFPELTEERRKELAKDVKKKGEGAKVAVR 128 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 NIRRD D KK K+ + SED ++ E IQK+TD I ID E K KEIM Sbjct: 129 NIRRDANDTFKKMEKANEISEDDLSDAEEKIQKMTDKMIDKIDKAVETKTKEIMTV 184 >gi|310659006|ref|YP_003936727.1| ribosome recycling factor [Clostridium sticklandii DSM 519] gi|308825784|emb|CBH21822.1| ribosome recycling factor [Clostridium sticklandii] Length = 185 Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats. Identities = 71/179 (39%), Positives = 119/179 (66%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++++M TI+ LK +++T+R GR +P+MLD V V+ YG+ PL Q+A V+ EPR ++ Sbjct: 7 KKLEEKMEKTIAVLKDELLTIRAGRANPNMLDRVMVDYYGTMTPLKQMAGVSSPEPRTIL 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + WDK + S+E+ I S+LG NP +G +RI +P+ TEERR L+K+ E++K+ Sbjct: 67 IQPWDKSAMGSIEKAILSSDLGFNPTNDGNSIRINIPQLTEERRKDLIKLVAKTGEQAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN RR+ + +KK K+ + +ED ++++QK+TDS IK ID +K+K+IM Sbjct: 127 AIRNERREANEAIKKMEKTSELTEDDSKKAQDEVQKLTDSHIKMIDDMLAKKEKDIMEV 185 >gi|329769638|ref|ZP_08261042.1| ribosome-recycling factor [Gemella sanguinis M325] gi|328838393|gb|EGF88002.1| ribosome-recycling factor [Gemella sanguinis M325] Length = 185 Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats. Identities = 76/186 (40%), Positives = 121/186 (65%), Gaps = 1/186 (0%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M + I + N+ +RM I+ L++++ ++R G+ S S+LD + V+ YG P+NQVA ++V Sbjct: 1 MPEQI-MNNLNERMEKAIANLRRELASIRAGKASASVLDRLTVDYYGVATPINQVAGISV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EP+MLV+S ++K ++ +E+ I S+LGLNP +G V+RI P TEERR L K+ Sbjct: 60 PEPKMLVISPYEKTLLGDIEKAIQASDLGLNPANDGTVIRIVFPALTEERRKELAKLVGK 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 +E +K++VRN+RRD MD +KK K+ + +ED + +DIQK TD + ID +EK+ Sbjct: 120 ESEGAKVAVRNVRRDAMDSMKKLEKASQITEDDLKGYSDDIQKATDKYVAEIDKVTKEKQ 179 Query: 181 KEIMHF 186 E+M Sbjct: 180 DELMSV 185 >gi|317406265|gb|EFV86509.1| frr protein [Achromobacter xylosoxidans C54] Length = 186 Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats. Identities = 73/179 (40%), Positives = 116/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM ++ LK ++ +RTGR +LD V+VE YGS VP++QV NV +++ R + Sbjct: 8 KSAEARMAKSLDTLKTNLAKIRTGRAHTGILDHVQVEYYGSPVPISQVGNVNLIDARTIS 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V ++K M A++E+ I ES+LGLNP+ G +R+P+P TEERR L KV + E +K+ Sbjct: 68 VQPYEKSMAAAIEKAIRESDLGLNPMSMGDSIRVPMPALTEERRRDLTKVVRSEGEDAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RR+ + LKK K + SED ++D+QK+TD ++ +ID +K+ EIM Sbjct: 128 AVRNLRREANEGLKKLVKDKEISEDDERRAQDDVQKLTDRSVADIDKMVTQKEAEIMTV 186 >gi|331084701|ref|ZP_08333789.1| ribosome-recycling factor [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410795|gb|EGG90217.1| ribosome-recycling factor [Lachnospiraceae bacterium 9_1_43BFAA] Length = 183 Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats. Identities = 78/186 (41%), Positives = 116/186 (62%), Gaps = 3/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 MN+ +++ ++M + + L ++ T+R GR +P +LD + V+ YGS P+ QVANV+V Sbjct: 1 MNERLNV--FNEKMEKSYNSLTSELATIRAGRANPHVLDKLTVDYYGSPTPIQQVANVSV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E RM+ + W+K MV +E+ I S++G+NP +G V+R+ PE TEERR LVK Sbjct: 59 PEARMIQIQPWEKSMVKEIEKAILTSDIGINPTNDGTVIRLVFPELTEERRKELVKDVKK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E K++VRNIRRDG D KK K + SED + LE+++QK+TD I I+ E K Sbjct: 119 KGEAGKVAVRNIRRDGNDTFKKL-KGTEVSEDEIKDLEDELQKLTDKYIAQIEKAVEAKS 177 Query: 181 KEIMHF 186 KE+M Sbjct: 178 KEVMTV 183 >gi|163747132|ref|ZP_02154488.1| ribosome recycling factor [Oceanibulbus indolifex HEL-45] gi|161379693|gb|EDQ04106.1| ribosome recycling factor [Oceanibulbus indolifex HEL-45] Length = 188 Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats. Identities = 86/183 (46%), Positives = 120/183 (65%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 ++D +++ RM I+ L+ + +LRTGR S SML+ V VEAYG P+NQV V V EP Sbjct: 6 MLDTDDLERRMNGAIASLRTEFASLRTGRGSASMLEPVMVEAYGQMTPVNQVGTVNVPEP 65 Query: 64 RMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAE 123 RM+ ++VWDK +V VE+ I ES LG+NP + G ++ +P+PE EERR L KVA YAE Sbjct: 66 RMVTINVWDKGLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRTQLTKVAGQYAE 125 Query: 124 KSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +++S+RNIRRDGMD +KK++ G SED E ++Q +T+ I ID E K+ EI Sbjct: 126 HARVSIRNIRRDGMDQIKKAKNDGAMSEDDQKIWEGEVQDLTNRFITLIDDQLETKQAEI 185 Query: 184 MHF 186 M Sbjct: 186 MQV 188 >gi|319899040|ref|YP_004159133.1| Ribosome recycling factor [Bartonella clarridgeiae 73] gi|319403004|emb|CBI76559.1| Ribosome recycling factor [Bartonella clarridgeiae 73] Length = 186 Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats. Identities = 98/186 (52%), Positives = 129/186 (69%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ + + ++K RM IS + ++ +LRTGR S S+L+ + VEAYGS VP+NQVAN++V Sbjct: 1 MDITLIMDDLKRRMEGAISSFRHELGSLRTGRASASLLEHLTVEAYGSVVPINQVANISV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E RML VSVWDK M+ VER I +S LGLNPI EG LRIP+PE EERR LVK+AH Sbjct: 61 PESRMLSVSVWDKTMIGVVERAIRDSGLGLNPITEGMNLRIPLPELNEERRKELVKIAHQ 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE+++IS R++RRDGMD+LKK K G+ +D SL +QK+TD T+ ID K+ Sbjct: 121 YAEQARISARHVRRDGMDNLKKLEKEGEIGQDEARSLSEKVQKLTDETVAEIDKILVLKE 180 Query: 181 KEIMHF 186 EIM Sbjct: 181 TEIMQV 186 >gi|332994201|gb|AEF04256.1| ribosome recycling factor [Alteromonas sp. SN2] Length = 185 Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats. Identities = 77/186 (41%), Positives = 114/186 (61%), Gaps = 1/186 (0%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M I+L + ++RM +IS LK +RTGR PS+LD + V YG+ PL QVANV Sbjct: 1 MIDEIEL-DAQERMDKSISALKGQFSKIRTGRAHPSLLDGIMVPYYGTDTPLKQVANVIA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R L ++V+DK + +VE+ I +++LGLNP+ G +RIP+P TEERR L++V Sbjct: 60 EDSRTLALTVFDKSAIQAVEKAIMQADLGLNPMSAGGSIRIPLPPLTEERRKDLIRVVRN 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE ++S+RNIRRD +K+ K + SED + E +IQ +T+ IK +D K+ Sbjct: 120 EAENGRVSIRNIRRDANSDVKELLKEKEISEDESRAAEENIQSLTNDFIKKVDGMLAVKE 179 Query: 181 KEIMHF 186 KE+M Sbjct: 180 KELMEV 185 >gi|257094441|ref|YP_003168082.1| ribosome recycling factor [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046965|gb|ACV36153.1| ribosome recycling factor [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 186 Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 112/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + + +M ++ L+ D+ +RTGR +LD V+VE YGS VP+N VANVT+++ R L Sbjct: 8 KTTERKMEKSLEALRTDLAKVRTGRAHTGLLDHVQVEYYGSLVPINTVANVTLIDARTLG 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K M VE+ I + +LGLNP +G+++R+P+P TE RR L+KV A AE +K+ Sbjct: 68 VQPWEKGMAGKVEKAIRDCDLGLNPASQGELIRVPMPPLTEARRRDLIKVVRAEAEGAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD LK+ K+ SED +++IQK+TD + ID K+ E+M Sbjct: 128 AVRNLRRDANATLKEMLKNKACSEDEEHRAQDEIQKLTDRYVVEIDKQLSHKETELMAI 186 >gi|258406064|ref|YP_003198806.1| ribosome recycling factor [Desulfohalobium retbaense DSM 5692] gi|257798291|gb|ACV69228.1| ribosome recycling factor [Desulfohalobium retbaense DSM 5692] Length = 184 Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats. Identities = 71/180 (39%), Positives = 113/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + K RM I+ L+K+ LRTGR S S++D ++V Y + PLNQ+A++++ + R + Sbjct: 5 FTDAKKRMEKAITNLEKEFSRLRTGRASASLVDGIQVSYYNTPTPLNQLASISIPDARTI 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WD+ ++E+ I +S+LGLNP+ +G+++RI +P TEERR LVK+A + E +K Sbjct: 65 AIQPWDRSSFENIEKAIMQSDLGLNPVNDGKIIRINIPALTEERRKELVKIAKKHTEDAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIRRD + LKK + SED + + IQK+TD + + EK+KEIM Sbjct: 125 IAIRNIRRDANEELKKQKNDKTISEDDMHRGQEKIQKLTDEFVDKAEKTLTEKEKEIMEI 184 >gi|167646764|ref|YP_001684427.1| ribosome recycling factor [Caulobacter sp. K31] gi|189044048|sp|B0SZ18|RRF_CAUSK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|167349194|gb|ABZ71929.1| ribosome recycling factor [Caulobacter sp. K31] Length = 188 Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats. Identities = 93/180 (51%), Positives = 123/180 (68%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L KDRM + LK+D LRTGR S +LD + V AYGS V LN VA+++V EPR + Sbjct: 9 LTRYKDRMDKAVLSLKEDFAGLRTGRASSGLLDQIMVNAYGSMVQLNTVASISVPEPRQI 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V++WDK +V++VE+ I S+LGLNP+VEG LRIP+P TEERR LVK+A YAE K Sbjct: 69 NVNIWDKGVVSAVEKAIRNSDLGLNPVVEGNNLRIPIPPLTEERRKDLVKIAGKYAEAQK 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD D LKK+ K+ SED + +E ++QKITD IK +D + K++EIM Sbjct: 129 VAVRNIRRDANDDLKKAEKASVISEDELKKMETEVQKITDGAIKQVDEALKTKEQEIMQV 188 >gi|114764271|ref|ZP_01443499.1| ribosome recycling factor [Pelagibaca bermudensis HTCC2601] gi|114543219|gb|EAU46236.1| ribosome recycling factor [Roseovarius sp. HTCC2601] Length = 187 Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats. Identities = 87/188 (46%), Positives = 127/188 (67%), Gaps = 3/188 (1%) Query: 1 MNQVIDLQ--NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 M++ +L ++K RM ++ L+ + +LRTGR S SML+ V+VEAYG P+NQV V Sbjct: 1 MSEDFELDTDDLKRRMDGAMANLRTEFASLRTGRASASMLEPVQVEAYGQMTPINQVGTV 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 V EPRM+ ++VWDK +V VE+ I ES LG+NP + G ++ +P+PE EERR L KVA Sbjct: 61 NVPEPRMVTINVWDKGLVNKVEKAIRESGLGINPQMNGTIIMLPIPELNEERRRELGKVA 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 YAE ++++VRN+RRDGMD +KK++ G SED E ++Q++TD+ IK +D E Sbjct: 121 GQYAEHARVAVRNVRRDGMDQIKKAKADG-MSEDDQKFWETEVQELTDAYIKKVDQSLET 179 Query: 179 KKKEIMHF 186 K++EIM Sbjct: 180 KQEEIMQV 187 >gi|149907550|ref|ZP_01896297.1| ribosome releasing factor [Moritella sp. PE36] gi|149809220|gb|EDM69149.1| ribosome releasing factor [Moritella sp. PE36] Length = 185 Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats. Identities = 78/186 (41%), Positives = 119/186 (63%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ D + + RMG +I LK + +RTGR PS+L+ + V YG++ PLNQV NV Sbjct: 2 INEIKD--DAQARMGKSIDALKSQLSKVRTGRAHPSILNGITVSYYGTNTPLNQVGNVGT 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R L ++V+D MV +VE+ I S+LGLNP G +RIP+P TEERR +L+KV A Sbjct: 60 EDSRTLSITVFDATMVKAVEKAIMMSDLGLNPQSAGTNIRIPLPALTEERRKSLIKVVRA 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE+ ++++RNIRRD +K K + ED +++IQK+TD+ IK ID+ +K+ Sbjct: 120 DAEQGRVAIRNIRRDANGDIKALLKEKEIGEDDDRRAQDEIQKMTDTCIKQIDTILSDKE 179 Query: 181 KEIMHF 186 K++M Sbjct: 180 KDLMEV 185 >gi|307152127|ref|YP_003887511.1| ribosome recycling factor [Cyanothece sp. PCC 7822] gi|306982355|gb|ADN14236.1| ribosome recycling factor [Cyanothece sp. PCC 7822] Length = 182 Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats. Identities = 70/177 (39%), Positives = 111/177 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++ M TI ++ T+RTGR + S+LD V VE YG+ PL +AN+T + + Sbjct: 3 LAEVQENMQKTIEATQRSFNTIRTGRANASLLDRVTVEYYGTETPLKSLANITTPDATTI 62 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + +D+ + +E+ I S++GL P +GQ++R+ +P T +RR LVK+A AE+ K Sbjct: 63 AIQPYDRSSLGKIEKAIQMSDVGLTPNNDGQIIRLNIPPLTSDRRKELVKLAGKLAEEGK 122 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 ++VRNIRRD +D ++K KS + SED +L++DIQKITD ID + K+K+I Sbjct: 123 VAVRNIRRDAIDAIRKQEKSHEISEDEARNLQDDIQKITDEYNAKIDELLKAKEKDI 179 >gi|148261537|ref|YP_001235664.1| ribosome recycling factor [Acidiphilium cryptum JF-5] gi|326405026|ref|YP_004285108.1| ribosome-recycling factor [Acidiphilium multivorum AIU301] gi|166230404|sp|A5G1L3|RRF_ACICJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|146403218|gb|ABQ31745.1| ribosome recycling factor [Acidiphilium cryptum JF-5] gi|325051888|dbj|BAJ82226.1| ribosome-recycling factor [Acidiphilium multivorum AIU301] Length = 188 Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats. Identities = 85/188 (45%), Positives = 121/188 (64%), Gaps = 2/188 (1%) Query: 1 MNQVID--LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 M+ +D L +++ RM + LK++ LRTGR +P++LD VKVEAYG+ +PLNQVA V Sbjct: 1 MDADLDTLLADLQRRMDGAMETLKREFSGLRTGRANPALLDPVKVEAYGTLMPLNQVATV 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 V E RML V VWD+ MV + I + LGLNP +GQ++R+P+P TEERR L + A Sbjct: 61 AVPESRMLTVQVWDRGMVNATVAAIRDCGLGLNPQPDGQLIRVPLPLLTEERRNELARAA 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 YAE ++++VR +RRDGM+ +K K + ED + +QK+TD+TIK ID E Sbjct: 121 GKYAEGARVAVRGVRRDGMETIKGFEKKHQIGEDQGRDWADRVQKLTDATIKKIDELLVE 180 Query: 179 KKKEIMHF 186 K+K+I Sbjct: 181 KEKDIRQV 188 >gi|254488037|ref|ZP_05101242.1| ribosome recycling factor [Roseobacter sp. GAI101] gi|214044906|gb|EEB85544.1| ribosome recycling factor [Roseobacter sp. GAI101] Length = 187 Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats. Identities = 85/183 (46%), Positives = 122/183 (66%), Gaps = 1/183 (0%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 ++D +++ RM I+ L+ + +LRTGR S SMLD + V+AYG+ P+NQV V V EP Sbjct: 6 MLDTDDLERRMDGAIASLRTEFASLRTGRGSASMLDPIMVDAYGTKTPINQVGTVNVPEP 65 Query: 64 RMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAE 123 RM+ ++VWDK +V VE+ I ES LG+NP + G ++ +P+PE EERR +L KVA YAE Sbjct: 66 RMVTINVWDKSLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRTSLTKVAGQYAE 125 Query: 124 KSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +++S+RNIRRDGMD +KK++ G SED E ++Q +T+ I ID E K+ EI Sbjct: 126 HARVSIRNIRRDGMDQIKKAKADG-MSEDDQKVWEGEVQDMTNKYIAMIDEQLETKQAEI 184 Query: 184 MHF 186 M Sbjct: 185 MQV 187 >gi|111023540|ref|YP_706512.1| ribosome recycling factor [Rhodococcus jostii RHA1] gi|122955102|sp|Q0S282|RRF_RHOSR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|110823070|gb|ABG98354.1| ribosome recycling factor [Rhodococcus jostii RHA1] Length = 185 Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats. Identities = 64/180 (35%), Positives = 110/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M ++ K D+ ++RTGR +P M + + ++ YG+ P+ Q+A++ V E R++ Sbjct: 6 LFEAEEKMEKAVTVAKDDLGSIRTGRANPGMFNRIGIDYYGAFTPITQLASINVPEARLV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV ++ + ++E I S+LG+NP +G ++RI VP+ TEERR LVK A + E +K Sbjct: 66 VVKPYEASQLGAIETAIRNSDLGVNPSNDGNLIRISVPQLTEERRRELVKQAKSKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +SVRN+RR MD L + +K G+A ED V E ++ K T + +D + K+ E++ Sbjct: 126 VSVRNVRRKAMDELSRIQKDGEAGEDEVGRAEKELDKTTARYVAQVDELVKHKEAELLEV 185 >gi|326388633|ref|ZP_08210226.1| ribosome recycling factor [Novosphingobium nitrogenifigens DSM 19370] gi|326206884|gb|EGD57708.1| ribosome recycling factor [Novosphingobium nitrogenifigens DSM 19370] Length = 185 Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats. Identities = 85/180 (47%), Positives = 118/180 (65%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D +++ RM + L+ D+ LRTGR + ++LD + VE YGS +PLNQVA V+ EPR Sbjct: 4 YDKADLERRMKGAVDALRHDLSGLRTGRANTALLDPITVEIYGSRMPLNQVATVSAPEPR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 +L V VWDK + VE+ I + LGLNPI +G LR+P+P+ TEERR L K+A YAEK Sbjct: 64 LLSVQVWDKSSIGPVEKAIRSAGLGLNPINDGNTLRLPIPDLTEERRKELAKLASQYAEK 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++I++RN+RRDGM+ LK + SED E ++QK+TD IK D EK+KEI+ Sbjct: 124 ARIAIRNVRRDGMEALKADEAKKEISEDERKRAETEVQKLTDEIIKAADEAASEKEKEIL 183 >gi|329912033|ref|ZP_08275644.1| Ribosome recycling factor [Oxalobacteraceae bacterium IMCC9480] gi|327545756|gb|EGF30890.1| Ribosome recycling factor [Oxalobacteraceae bacterium IMCC9480] Length = 186 Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats. Identities = 77/179 (43%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N RM +I LK D+ +RTGR MLD + V+ YG+ L QVANVT+++ R L Sbjct: 8 KNTDVRMHKSIETLKTDLAKVRTGRAHVGMLDHIMVDYYGNPTQLTQVANVTLVDARTLG 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K+MV+ VE+ I +++LGLNP +G ++R+P P TEERR +VK+ + AE +KI Sbjct: 68 VQPWEKKMVSVVEKAIRDADLGLNPSTQGDLIRVPTPALTEERRKEMVKLVKSEAEDAKI 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD + LKK K + SED +++IQK+TD + ID +K+KE++ Sbjct: 128 AIRNIRRDANEGLKKLIKDKECSEDDERRAQDEIQKMTDKFVAEIDKLVVDKEKEVLTV 186 >gi|241764760|ref|ZP_04762769.1| ribosome recycling factor [Acidovorax delafieldii 2AN] gi|241365750|gb|EER60422.1| ribosome recycling factor [Acidovorax delafieldii 2AN] Length = 186 Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats. Identities = 79/179 (44%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + + +M +I+ K ++ +RTGR +P++LD V VE YGS VPL+QVANV +L+ R + Sbjct: 8 KTAETKMDQSIAAFKNNLQKIRTGRANPALLDTVHVEYYGSPVPLSQVANVALLDSRTIS 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K M A +E+ I ES+LGLNP G ++R+P+P +EERR + K+A E +KI Sbjct: 68 VQPWEKGMGAKIEKAIRESDLGLNPASMGDLIRVPMPPMSEERRKEMTKLARNEGESAKI 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD + +KK K ASED E D+QK TD I ID+ K++EIM Sbjct: 128 AVRNLRRDANESVKKLVKDKLASEDDQKRAETDVQKFTDKHIAEIDALVAAKEQEIMAV 186 >gi|317495174|ref|ZP_07953544.1| ribosome recycling protein [Gemella moribillum M424] gi|316914596|gb|EFV36072.1| ribosome recycling protein [Gemella moribillum M424] Length = 185 Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats. Identities = 76/186 (40%), Positives = 122/186 (65%), Gaps = 1/186 (0%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M + I + N+ +RM I+ L++++ ++R G+ S ++LD + V+ YG P+NQVA V+V Sbjct: 1 MPEQI-MNNLNERMEKAIASLRRELASIRAGKASAAVLDRLTVDYYGVATPINQVAGVSV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EP+MLV+S ++K ++ +ER I S+LGLNP +G V+RI P TEERR L K+ Sbjct: 60 PEPKMLVISPYEKTLLGDIERAIQASDLGLNPSNDGSVIRIVFPALTEERRKELAKLVGK 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 +E +K++VRN+RRD +D +KK K+ + +ED + +DIQK+TD + ID +EK+ Sbjct: 120 ESEGAKVAVRNVRRDAIDAMKKLEKASQITEDDLKGYSDDIQKVTDKFVAEIDKVTKEKQ 179 Query: 181 KEIMHF 186 E+M Sbjct: 180 DELMSV 185 >gi|326316576|ref|YP_004234248.1| ribosome recycling factor [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373412|gb|ADX45681.1| ribosome recycling factor [Acidovorax avenae subsp. avenae ATCC 19860] Length = 186 Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats. Identities = 78/179 (43%), Positives = 117/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N + +M +I K ++ +RTGR +P++LD V+VE YGS VPL+QVANV++++ R + Sbjct: 8 KNTEAKMDQSIVAFKNNLAKIRTGRANPALLDSVQVEYYGSMVPLSQVANVSLIDARTIS 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K M A +E+ I ES+LGLNP G ++R+P+P +EERR + K+A E +K+ Sbjct: 68 VQPWEKGMGAKIEKAIRESDLGLNPASMGDLIRVPMPPMSEERRKEMTKLARNEGEGAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD + +KK K ASED E DIQK+TD I +D+ K++EIM Sbjct: 128 AVRNLRRDANESVKKLVKDKLASEDEQKRAEADIQKVTDKHIAEVDALVAAKEQEIMAV 186 >gi|325673456|ref|ZP_08153147.1| ribosome recycling factor [Rhodococcus equi ATCC 33707] gi|325555477|gb|EGD25148.1| ribosome recycling factor [Rhodococcus equi ATCC 33707] Length = 185 Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats. Identities = 67/180 (37%), Positives = 108/180 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M I+ K D+ ++RTGR +P M + V VE YGS P+ Q+A++ V E RM+ Sbjct: 6 LFEAEEKMEKAITVAKDDLGSIRTGRANPGMFNRVVVEYYGSMTPITQLASINVPEARMV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ ++ + +E I S+LG+NP +G ++RI VP+ TEERR VK A + E +K Sbjct: 66 IIKPYEASQLGPIENAIRNSDLGVNPSNDGSIIRISVPQLTEERRREFVKQAKSKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RN+RR MD L + +K G+A ED V E ++ K T + ID + K+ E+M Sbjct: 126 VAIRNVRRKTMDELSRIQKDGEAGEDEVGRAEKELDKTTSRYVSQIDELVKHKEAELMEV 185 >gi|329889359|ref|ZP_08267702.1| ribosome recycling factor [Brevundimonas diminuta ATCC 11568] gi|328844660|gb|EGF94224.1| ribosome recycling factor [Brevundimonas diminuta ATCC 11568] Length = 185 Score = 238 bits (607), Expect = 3e-61, Method: Composition-based stats. Identities = 93/181 (51%), Positives = 124/181 (68%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 DL+ +DRM +++ LK D LRTGR + +L+ V VEAYG+ PL VA ++V EPRM Sbjct: 5 DLKTFRDRMDKSVAALKDDYAGLRTGRANAGLLEPVVVEAYGATSPLTAVAAISVPEPRM 64 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 + V+VWDK MV SVE+ I + LGLNP+V+GQ LRIP+P TEERR L K+A YAE Sbjct: 65 ISVNVWDKGMVVSVEKAIRSAGLGLNPVVDGQTLRIPIPPLTEERRKDLAKLAGKYAEDK 124 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 KI+VRN+RRD D LKK+ K+G+ S+D +E ++QK TD+ IK ID + K+ EIM Sbjct: 125 KIAVRNVRRDANDELKKAEKAGEISQDEQKKMEAEVQKDTDAAIKRIDETLKAKEVEIMQ 184 Query: 186 F 186 Sbjct: 185 V 185 >gi|54310081|ref|YP_131101.1| ribosome recycling factor [Photobacterium profundum SS9] gi|60390707|sp|Q6LN27|RRF_PHOPR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|46914520|emb|CAG21299.1| putative ribosome recycling factor [Photobacterium profundum SS9] Length = 185 Score = 238 bits (607), Expect = 3e-61, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 118/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++RMG ++ LK ++ +RTGR PS+LD + VE YG++ PL Q+ANV + R L Sbjct: 7 NDAQERMGKSVDALKNQLVKIRTGRAHPSLLDTIYVEYYGANTPLKQLANVVAEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+E+ +E+ I S+LGLNP+ G V+R+P+P TEERR LVK+ AE+ ++ Sbjct: 67 ITVFDRELTPKIEKAIMMSDLGLNPMSAGTVIRVPLPPLTEERRRDLVKIVRKEAEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD LK K + SED +++IQK+TD +KNI++ E K+KE+M Sbjct: 127 AIRNIRRDANADLKALLKDKEISEDDDRRAQDEIQKLTDVAVKNIEAVLEVKEKELMEV 185 >gi|119946594|ref|YP_944274.1| ribosome recycling factor [Psychromonas ingrahamii 37] gi|166231213|sp|A1SYW0|RRF_PSYIN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|119865198|gb|ABM04675.1| ribosome recycling factor [Psychromonas ingrahamii 37] Length = 185 Score = 238 bits (607), Expect = 3e-61, Method: Composition-based stats. Identities = 72/179 (40%), Positives = 106/179 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + + RM ++ + + +RTGR PS+LD + V YGS+ PL QV NV+ + R L Sbjct: 7 SDAQSRMDKSVEAFRSQLSKIRTGRAHPSLLDGIMVPYYGSNTPLRQVGNVSTEDARTLT 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+V+D ++ +VE+ I S+LGLNP+ G V+RIP+P TEERR L+K+ AE S+I Sbjct: 67 VTVFDASLIKAVEKAIMGSSLGLNPMSAGTVIRIPLPPLTEERRRDLIKIVRGEAENSRI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD + LK K SED E +QK T+ IK I+ K+ E++ Sbjct: 127 AIRNIRRDANNDLKLLEKDKDISEDEQRVGEELVQKTTNDHIKQIEDLLVVKEAELLEV 185 >gi|78222467|ref|YP_384214.1| ribosome recycling factor [Geobacter metallireducens GS-15] gi|123572206|sp|Q39W85|RRF_GEOMG RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|78193722|gb|ABB31489.1| ribosome recycling factor [Geobacter metallireducens GS-15] Length = 185 Score = 238 bits (607), Expect = 4e-61, Method: Composition-based stats. Identities = 67/180 (37%), Positives = 113/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + ++K M ++ L+++ +RTGR + +LD +KVE YG+ PL+QVA ++V EPR + Sbjct: 6 IADMKAHMEKSVDALRREYQKVRTGRATTGLLDDIKVEYYGNPSPLSQVATLSVPEPRTI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + W+ +++ +E+ I +NLG P +G+ +RI +P TEERR +VK AE +K Sbjct: 66 TIQPWEAKLIPVIEKAIMNANLGFTPANDGKTIRISLPPLTEERRKEIVKTLKKMAEDTK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRDG+D LKK K K SED + E ++Q +T++ + ++ K+KE++ Sbjct: 126 VAVRNIRRDGIDSLKKLEKDKKISEDDLKRAEKEVQDVTNTFVAKVEEVLTHKEKEVLEV 185 >gi|33592520|ref|NP_880164.1| ribosome recycling factor [Bordetella pertussis Tohama I] gi|33596177|ref|NP_883820.1| ribosome recycling factor [Bordetella parapertussis 12822] gi|33601585|ref|NP_889145.1| ribosome recycling factor [Bordetella bronchiseptica RB50] gi|39932121|sp|Q7VYC7|RRF_BORPE RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|39932131|sp|Q7WA57|RRF_BORPA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|39932138|sp|Q7WJ91|RRF_BORBR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|33572166|emb|CAE41712.1| ribosome recycling factor [Bordetella pertussis Tohama I] gi|33573180|emb|CAE36832.1| ribosome recycling factor [Bordetella parapertussis] gi|33576021|emb|CAE33101.1| ribosome recycling factor [Bordetella bronchiseptica RB50] gi|332381938|gb|AEE66785.1| ribosome recycling factor [Bordetella pertussis CS] Length = 186 Score = 238 bits (607), Expect = 4e-61, Method: Composition-based stats. Identities = 73/179 (40%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM ++ LK + +RTGR +LD V+VE YGS VP++QVANV +++ R + Sbjct: 8 KSAETRMAKSLETLKASLAKIRTGRAHTGILDHVQVEYYGSPVPISQVANVNLVDARTIS 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V ++K M +E+ I ES+LGLNP+ G+ +R+P+P TEERR L KV + E +K+ Sbjct: 68 VQPYEKSMAGPIEKAIRESDLGLNPVSMGETIRVPMPALTEERRRDLTKVVKSEGEDAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RR+ + LKK K + SED ++D+QK+TD + +ID +K+ EIM Sbjct: 128 AVRNLRREANEALKKLVKDKEISEDDERRAQDDVQKLTDRAVGDIDKMIVQKEAEIMTV 186 >gi|187478231|ref|YP_786255.1| ribosome recycling factor [Bordetella avium 197N] gi|123515019|sp|Q2L159|RRF_BORA1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|115422817|emb|CAJ49345.1| ribosome recycling factor [Bordetella avium 197N] Length = 186 Score = 238 bits (607), Expect = 4e-61, Method: Composition-based stats. Identities = 71/179 (39%), Positives = 111/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + + RM ++ LK ++ +RTGR +LD V+VE YGS VP+ QVAN+ +++ R + Sbjct: 8 NSAESRMSKSLDTLKVNLSKIRTGRAHAGILDHVQVEYYGSPVPVGQVANLNLVDARTIS 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V ++K M +ER I +S+LGLNP+ G +R+P+P TEERR L KV + E +K+ Sbjct: 68 VQPYEKHMAGPIERAIRDSDLGLNPVSLGDTIRVPMPALTEERRRDLTKVVRSEGEDAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RR+ + LKK K SED ++++QK+TD + +ID +K+ EIM Sbjct: 128 AVRNLRREANEALKKLVKDKIISEDDERRGQDEVQKLTDRAVADIDKMVTQKEAEIMTV 186 >gi|296085196|emb|CBI28691.3| unnamed protein product [Vitis vinifera] Length = 274 Score = 238 bits (607), Expect = 4e-61, Method: Composition-based stats. Identities = 67/179 (37%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +++K+RM TI ++ + ++RTGR +P++LD V+VE YG+ V L +A ++ + L+ Sbjct: 96 KDVKERMEKTIETVRTNFNSIRTGRANPAILDRVEVEYYGTPVSLKSIAQISTPDSASLL 155 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +DK + +E+ I S+LGL P +G+V+R+ +P+ T ERR L KV E+ K+ Sbjct: 156 VQPYDKSSLKVIEKAIVSSDLGLTPNNDGEVIRLSLPQLTSERRKELSKVVAKQTEEGKV 215 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD + +K K K SED V L +D+QK+ D +K I++ +++K+KE++ Sbjct: 216 ALRNIRRDALKAYEKLEKDKKLSEDNVKDLSSDLQKLIDEYMKKIETIYKQKEKELLKV 274 >gi|149186826|ref|ZP_01865136.1| ribosome recycling factor [Erythrobacter sp. SD-21] gi|148829493|gb|EDL47934.1| ribosome recycling factor [Erythrobacter sp. SD-21] Length = 185 Score = 238 bits (607), Expect = 4e-61, Method: Composition-based stats. Identities = 92/180 (51%), Positives = 125/180 (69%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D +I+ RM I LK D+ LRTGR + S+LD V VE YGS +PLNQVA V+ EPR Sbjct: 4 YDKSDIERRMKGAIESLKGDLSGLRTGRANTSLLDPVVVEVYGSMMPLNQVATVSAPEPR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 ML V VWDK V +VE+GI ++NLGLNP+++GQ +R+P+P+ TEERR L K+A YAE+ Sbjct: 64 MLSVQVWDKANVTAVEKGIAKANLGLNPMIDGQNVRLPMPDLTEERRRDLAKLAGQYAEQ 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 SKI++RN+RRDGM+ LK+ K + SED E+++QK+TD + + K+KEIM Sbjct: 124 SKIAIRNVRRDGMEALKEDEKKKEISEDDRKRSEDEVQKLTDKYVAEAEQAASAKEKEIM 183 >gi|294084085|ref|YP_003550843.1| ribosome recycling factor [Candidatus Puniceispirillum marinum IMCC1322] gi|292663658|gb|ADE38759.1| ribosome recycling factor [Candidatus Puniceispirillum marinum IMCC1322] Length = 185 Score = 238 bits (607), Expect = 4e-61, Method: Composition-based stats. Identities = 88/182 (48%), Positives = 128/182 (70%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D++++K RM + LK + M LR GR S ML+ + V+AYGS +P++QV N++ EPR Sbjct: 4 FDIEDMKRRMEGGFASLKTEFMGLRAGRASTGMLEPIMVDAYGSKMPMSQVGNISAPEPR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 +L V+VWD M ASVE+ I ES+LGLNP+ EG ++R+P+P+ +EERR +VKVA YAE Sbjct: 64 LLTVTVWDASMTASVEKAIRESDLGLNPMAEGTLIRVPIPDLSEERRKDMVKVAGRYAEA 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++++RN+RRDG++ ++K+ K G SED LE+DIQK TD +K ID F K+KEI Sbjct: 124 ARVAIRNVRRDGIESVRKAEKEGLMSEDERHGLESDIQKTTDEYVKKIDDAFANKEKEIT 183 Query: 185 HF 186 Sbjct: 184 QV 185 >gi|261367153|ref|ZP_05980036.1| ribosome recycling factor [Subdoligranulum variabile DSM 15176] gi|282571279|gb|EFB76814.1| ribosome recycling factor [Subdoligranulum variabile DSM 15176] Length = 184 Score = 238 bits (607), Expect = 4e-61, Method: Composition-based stats. Identities = 72/176 (40%), Positives = 115/176 (65%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 +++M ++ L +++ ++R GR +P++LD V V+ YGS P+NQ+A V+V E R+L ++ Sbjct: 9 EEKMNASVDHLVRELASIRAGRANPAVLDRVTVDYYGSPTPINQIAAVSVAEARILTITP 68 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 WD++M+ + + I S++G+NPI +GQV+R+ P TEERR L K E++K++VR Sbjct: 69 WDRQMLKPISKAIQTSDIGINPIDDGQVIRLVFPAPTEERRKQLTKDVQKQGEEAKVAVR 128 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 N+RRD MD K +K+G+ +ED LE + QK+TD +K ID K KEIM Sbjct: 129 NVRRDAMDKFKAMKKAGELTEDDQKKLEEETQKLTDKYVKMIDETCAAKNKEIMEV 184 >gi|126729706|ref|ZP_01745519.1| ribosome recycling factor [Sagittula stellata E-37] gi|126709825|gb|EBA08878.1| ribosome recycling factor [Sagittula stellata E-37] Length = 186 Score = 238 bits (607), Expect = 4e-61, Method: Composition-based stats. Identities = 85/188 (45%), Positives = 123/188 (65%), Gaps = 4/188 (2%) Query: 1 MNQVIDLQ--NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 M+ +L ++ RM + L+ + +LRTGR S SML+ + V+AYG+ P+NQV V Sbjct: 1 MSDEFELDTDDLTRRMEGAMGSLRTEFASLRTGRASGSMLEPIMVDAYGAMTPINQVGTV 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 V EPRM+ ++VWDK +V VE+ I ES LG+NP + G ++ +P+PE EERR L KVA Sbjct: 61 NVPEPRMVTINVWDKSLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRRELSKVA 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 YAE +++S+RNIRRDGMD +KK + SED E+++Q +TDS IK +D+ E Sbjct: 121 GQYAEHARVSIRNIRRDGMDQIKKHKDD--MSEDDAKLWESEVQDLTDSYIKKVDAALET 178 Query: 179 KKKEIMHF 186 K++EIM Sbjct: 179 KQEEIMQV 186 >gi|83647914|ref|YP_436349.1| ribosome recycling factor [Hahella chejuensis KCTC 2396] gi|123531340|sp|Q2SBQ0|RRF_HAHCH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|83635957|gb|ABC31924.1| ribosome recycling factor [Hahella chejuensis KCTC 2396] Length = 185 Score = 238 bits (607), Expect = 4e-61, Method: Composition-based stats. Identities = 71/179 (39%), Positives = 107/179 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + + +M ++ L +RTGR +P++L+ V V YG+ PL Q+ANV V + R L Sbjct: 7 KQSEQKMKKSMEALGHAFAKIRTGRANPAILESVMVSYYGTDTPLTQIANVVVEDARTLS 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+ W+K MV +E+ I +S+LGLNP G V+R+P+P TEE R LVK A AE +++ Sbjct: 67 VTPWEKNMVPQIEKAILKSDLGLNPSTAGTVIRVPMPALTEETRKELVKTARGEAENTRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD +K K + SED +DIQK+TD I +D EK+K++M Sbjct: 127 AIRNLRRDANADIKTLLKDKEISEDEEKRGLDDIQKLTDKYIAEVDRVLAEKEKDLMAV 185 >gi|58040244|ref|YP_192208.1| ribosome recycling factor [Gluconobacter oxydans 621H] gi|62900775|sp|Q5FPZ4|RRF_GLUOX RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|58002658|gb|AAW61552.1| Ribosome Recycling Factor (RRF) [Gluconobacter oxydans 621H] Length = 188 Score = 238 bits (607), Expect = 4e-61, Method: Composition-based stats. Identities = 87/180 (48%), Positives = 121/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++ RM I L++D+ LR+GR SP++L+ V+VEAYGS VPL+QV ++ V E RML Sbjct: 9 LADLTRRMDGAIESLRRDLSGLRSGRASPNLLEPVRVEAYGSEVPLSQVGSIAVPEARML 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VSVWD+ +V +VER I +S LGLNP +GQ +R+P+P TEERR L + A YAE K Sbjct: 69 TVSVWDRTVVGAVERAIRDSGLGLNPSTDGQTVRVPIPALTEERRNELARAASRYAENGK 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ISVR +RRDGM+ K K + S+D + + + IQK+TD IK +D F +K++EI Sbjct: 129 ISVRGVRRDGMEQTKALEKKSEISQDDMKTWTDAIQKLTDQYIKKVDDIFADKEREIKQV 188 >gi|319405841|emb|CBI79473.1| Ribosome recycling factor [Bartonella sp. AR 15-3] Length = 186 Score = 237 bits (606), Expect = 4e-61, Method: Composition-based stats. Identities = 96/186 (51%), Positives = 129/186 (69%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ + + ++K RM IS K ++ +LRTGR S S+L+ + VEAYGS VP+NQVAN++V Sbjct: 1 MDITLIMDDLKRRMEGAISSFKHELGSLRTGRASASLLEHLTVEAYGSVVPINQVANISV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E RML VSVWDK M+ +VER I +S LGLNPI +G LRIP+PE EERR LVK+A+ Sbjct: 61 PESRMLSVSVWDKTMIGAVERAIRDSGLGLNPITDGMNLRIPLPELNEERRKELVKIAYQ 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 Y E+++I+ R++RRDGMD+LKK K G+ +D SL +QK+TD TI ID K+ Sbjct: 121 YTEQARIAARHVRRDGMDNLKKLEKEGEIGQDEARSLSEKVQKLTDETIAEIDKILLLKE 180 Query: 181 KEIMHF 186 EIM Sbjct: 181 TEIMQI 186 >gi|299144039|ref|ZP_07037119.1| ribosome recycling factor [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518524|gb|EFI42263.1| ribosome recycling factor [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 185 Score = 237 bits (606), Expect = 4e-61, Method: Composition-based stats. Identities = 70/179 (39%), Positives = 116/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ +++M TIS ++D+ ++R GR +PS+LD + V+ YG PLNQVA ++ EPR+L Sbjct: 7 KDAEEKMKKTISVYREDLQSIRAGRANPSLLDKITVDYYGQATPLNQVAGISAPEPRLLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++ WD ++ ++E+ I +S LG+ P +G+++R+ +P TEERR L K+ E +K+ Sbjct: 67 ITPWDASLIPAIEKAILKSELGITPSNDGKIVRLLIPHLTEERRKELTKIVRKNGENAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD +D +KK KS + SED E IQK+TD I+ +D + K+ E+M Sbjct: 127 AIRNIRRDSIDEVKKLEKSKEISEDDRKDGEEQIQKLTDKYIEELDKITKSKEDELMEI 185 >gi|326798845|ref|YP_004316664.1| ribosome-recycling factor [Sphingobacterium sp. 21] gi|326549609|gb|ADZ77994.1| Ribosome-recycling factor [Sphingobacterium sp. 21] Length = 187 Score = 237 bits (606), Expect = 4e-61, Method: Composition-based stats. Identities = 78/188 (41%), Positives = 119/188 (63%), Gaps = 3/188 (1%) Query: 1 MNQVIDLQ--NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 MN +I LQ + D M IS + ++ +R G+ PSMLD + V+ YG+ PL+QV N+ Sbjct: 1 MNDLIKLQLEDANDSMQKAISHTESELTKIRAGKAMPSMLDGINVDYYGTPTPLSQVGNI 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 +PR LV+ W+K +++++ER I +SN+GLNP +G ++R+ VP TEERR LV+ Sbjct: 61 NTPDPRSLVIQPWEKNLLSAIERAIIDSNIGLNPQNDGNIIRLAVPPLTEERRRELVRKV 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 AEK K+++RNIR+D D +KK + G SED + E ++QK+TD+ I +D E Sbjct: 121 KEEAEKGKVAIRNIRKDANDGIKKLKNDG-VSEDEIKVGEGEVQKLTDNFIAKVDKLAEA 179 Query: 179 KKKEIMHF 186 K+K+IM Sbjct: 180 KEKDIMTV 187 >gi|170727617|ref|YP_001761643.1| ribosome recycling factor [Shewanella woodyi ATCC 51908] gi|238688707|sp|B1KNU0|RRF_SHEWM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|169812964|gb|ACA87548.1| ribosome recycling factor [Shewanella woodyi ATCC 51908] Length = 185 Score = 237 bits (606), Expect = 4e-61, Method: Composition-based stats. Identities = 79/186 (42%), Positives = 115/186 (61%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ ++ +DRM + K M +RTGR PS+LD +KV YGS PL QV NV++ Sbjct: 2 LNEI--KKDAQDRMDKCVEATKTQMAKVRTGRAHPSLLDSIKVPYYGSLTPLKQVGNVSI 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R L +SV+D M+ +VE+ I S+LGLNP+ G +R+P+P TEERR L+KV A Sbjct: 60 EDSRTLAISVFDSTMIPAVEKAIMSSDLGLNPMSAGATIRVPLPALTEERRKDLIKVVRA 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE +I+VRN+RRD +K K + +ED V E+++QK TD+ IK ID K+ Sbjct: 120 EAENGRIAVRNVRRDANSDVKALEKEKECTEDDVHRSEDEVQKFTDAHIKLIDEILAAKE 179 Query: 181 KEIMHF 186 E+M Sbjct: 180 AELMEV 185 >gi|221133311|ref|ZP_03559616.1| ribosome recycling factor [Glaciecola sp. HTCC2999] Length = 185 Score = 237 bits (606), Expect = 4e-61, Method: Composition-based stats. Identities = 79/186 (42%), Positives = 113/186 (60%), Gaps = 1/186 (0%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M I+L + +DRM ++S LK + +RTGR PS+LD + V YG+ PL Q+AN+ Sbjct: 1 MIDEIEL-DAQDRMEKSVSALKSQLAKIRTGRAHPSLLDSIVVNYYGADTPLKQLANIIA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R L +SV+DK + +VE+ I S+LGLNP+ G +RIP+P TEERR L+KVA Sbjct: 60 EDSRTLALSVFDKSAIQAVEKAIMSSDLGLNPMSAGGAIRIPLPPLTEERRKDLIKVARG 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE +++VRNIRRD +K K SED + E +IQ +T+ IK +D K+ Sbjct: 120 EAENGRVAVRNIRRDANSDIKDLLKDKDISEDQARAGEENIQSLTNDFIKQVDELLSVKE 179 Query: 181 KEIMHF 186 KE+M Sbjct: 180 KELMEI 185 >gi|331698487|ref|YP_004334726.1| ribosome-recycling factor [Pseudonocardia dioxanivorans CB1190] gi|326953176|gb|AEA26873.1| Ribosome-recycling factor [Pseudonocardia dioxanivorans CB1190] Length = 185 Score = 237 bits (606), Expect = 5e-61, Method: Composition-based stats. Identities = 66/180 (36%), Positives = 114/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++M +S K D+ ++RTGR +PSM + V+ YG+ PLNQ+A+V+V E RM Sbjct: 6 LFDAEEKMEKAVSVAKDDLASVRTGRATPSMFSRIMVDYYGAMTPLNQLASVSVPEARMA 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV +D + ++E+ I S+LG+NP +GQ++R+ +P+ +EERR +VKVA E ++ Sbjct: 66 VVKPYDASQIGALEKAIRNSDLGVNPTNDGQIIRVVIPQLSEERRKEMVKVARGKGEDAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++R++RR M+ L + K G+A ED V E ++Q TD + +D + K+ E++ Sbjct: 126 VTIRSLRRKAMEELHRIVKEGEAGEDEVGRAEKELQGTTDKYVHQVDELVKHKEAELLEV 185 >gi|167037634|ref|YP_001665212.1| ribosome recycling factor [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040295|ref|YP_001663280.1| ribosome recycling factor [Thermoanaerobacter sp. X514] gi|256750775|ref|ZP_05491660.1| ribosome recycling factor [Thermoanaerobacter ethanolicus CCSD1] gi|300914379|ref|ZP_07131695.1| ribosome recycling factor [Thermoanaerobacter sp. X561] gi|307724385|ref|YP_003904136.1| ribosome recycling factor [Thermoanaerobacter sp. X513] gi|320116049|ref|YP_004186208.1| ribosome recycling factor [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|238687580|sp|B0K1P6|RRF_THEPX RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238687714|sp|B0K9R3|RRF_THEP3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166854535|gb|ABY92944.1| ribosome recycling factor [Thermoanaerobacter sp. X514] gi|166856468|gb|ABY94876.1| ribosome recycling factor [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256750358|gb|EEU63377.1| ribosome recycling factor [Thermoanaerobacter ethanolicus CCSD1] gi|300889314|gb|EFK84460.1| ribosome recycling factor [Thermoanaerobacter sp. X561] gi|307581446|gb|ADN54845.1| ribosome recycling factor [Thermoanaerobacter sp. X513] gi|319929140|gb|ADV79825.1| ribosome recycling factor [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 184 Score = 237 bits (606), Expect = 5e-61, Method: Composition-based stats. Identities = 82/180 (45%), Positives = 123/180 (68%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ +++M ++S LK ++ +R GR +P++LD + V+ YG+ PLN++A +T EPR+L Sbjct: 5 LKASEEKMQKSLSVLKNELAAIRAGRANPALLDRIMVDYYGTPTPLNRLATITAPEPRVL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV WD ++ +E+ I +S+LG+NP+ +G+VLR+ PE TEERR LVK+ H AE++K Sbjct: 65 VVQPWDVSKISDIEKAIQKSDLGINPVSDGKVLRLVFPELTEERRKELVKLVHKKAEEAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VR IRRD D +KK K+G+ SED E +IQK+TD IK ID E K+KEIM Sbjct: 125 VAVRQIRRDANDAVKKMEKNGEISEDERKKREEEIQKLTDKYIKEIDKVVEAKEKEIMEI 184 >gi|46198814|ref|YP_004481.1| ribosome recycling factor (rrf) [Thermus thermophilus HB27] gi|55980827|ref|YP_144124.1| ribosome recycling factor [Thermus thermophilus HB8] gi|6831652|sp|Q9WX76|RRF_THET8 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|60390719|sp|Q72KE0|RRF_THET2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|11513707|pdb|1EH1|A Chain A, Ribosome Recycling Factor From Thermus Thermophilus gi|157836509|pdb|2V46|Y Chain Y, Structure Of The Ribosome Recycling Factor Bound To The Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And Trna-Fmet (Part 1 Of 4). This File Contains The 30s Subunit, Mrna, P-Site Asl, E-Site Trna And Rrf For Molecule 1. gi|157836565|pdb|2V48|Y Chain Y, Structure Of The Ribosome Recycling Factor Bound To The Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And Trna-Fmet (Part 3 Of 4). This File Contains The 30s Subunit, Mrna, P-Site Asl, E-Site Trna And Rrf For Molecule 2. gi|158429965|pdb|2QBE|6 Chain 6, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Ribosome Recycling Factor (Rrf). This File Contains The 50s Subunit Of The First 70s Ribosome, With Rrf Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|158430018|pdb|2QBG|6 Chain 6, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Ribosome Recycling Factor (Rrf). This File Contains The 50s Subunit Of The Second 70s Ribosome, With Rrf Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|158430071|pdb|2QBI|6 Chain 6, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Gentamicin And Ribosome Recycling Factor (Rrf). This File Contains The 50s Subunit Of The First 70s Ribosome, With Gentamicin And Rrf Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|158430124|pdb|2QBK|6 Chain 6, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Gentamicin And Ribosome Recycling Factor (Rrf). This File Contains The 50s Subunit Of The Second 70s Ribosome, With Gentamicin And Rrf Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|158431424|pdb|2Z4L|6 Chain 6, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Paromomycin And Ribosome Recycling Factor (Rrf). This File Contains The 50s Subunit Of The First 70s Ribosome, With Paromomycin And Rrf Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|158431477|pdb|2Z4N|6 Chain 6, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Paromomycin And Ribosome Recycling Factor (Rrf). This File Contains The 50s Subunit Of The Second 70s Ribosome, With Paromomycin And Rrf Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|4589668|dbj|BAA76865.1| frr [Thermus thermophilus] gi|46196437|gb|AAS80854.1| ribosome recycling factor (rrf) [Thermus thermophilus HB27] gi|55772240|dbj|BAD70681.1| ribosome recycling factor (Rrf) [Thermus thermophilus HB8] Length = 185 Score = 237 bits (606), Expect = 5e-61, Method: Composition-based stats. Identities = 78/177 (44%), Positives = 113/177 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + M ++ L+ ++ LRTGR +P++L +KVE YG+HVPLNQ+A VT +PR LV Sbjct: 8 AETRSHMQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTAPDPRTLV 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V WD+ + ++E+ I +S+LGLNP +G L I +P TEERR LV+ YAE+ ++ Sbjct: 68 VQSWDQNALKAIEKAIRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVRQYAEEGRV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++RNIRR+ +D LKK K SED E +IQKITD I D E+K++EI+ Sbjct: 128 AIRNIRREALDKLKKLAKELHLSEDETKRAEAEIQKITDEFIAKADQLAEKKEQEIL 184 >gi|254477526|ref|ZP_05090912.1| ribosome recycling factor [Ruegeria sp. R11] gi|214031769|gb|EEB72604.1| ribosome recycling factor [Ruegeria sp. R11] Length = 187 Score = 237 bits (606), Expect = 5e-61, Method: Composition-based stats. Identities = 86/185 (46%), Positives = 124/185 (67%), Gaps = 1/185 (0%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 + ++D +++ RM + LK + +LRTGR S SML+ V V+AYGS P+NQV V V Sbjct: 4 DFILDTDDLQRRMDGAMGNLKTEFASLRTGRASASMLEPVMVDAYGSMTPINQVGTVNVP 63 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 EPRM+ V+VWDK +V VE+ I ES LG+NP + G ++ +P+PE EERR L KVA Y Sbjct: 64 EPRMVTVNVWDKALVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRRELGKVAGQY 123 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 AE +++++RN+RRDGMD +KK++ G SED E ++Q++TD IK +D+ E K+ Sbjct: 124 AESARVAIRNVRRDGMDQIKKAKADG-MSEDDQKLWEGEVQELTDKMIKAVDAALEVKQA 182 Query: 182 EIMHF 186 EIM Sbjct: 183 EIMQV 187 >gi|239908426|ref|YP_002955168.1| ribosome recycling factor [Desulfovibrio magneticus RS-1] gi|259494539|sp|C4XMX9|RRF_DESMR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|239798293|dbj|BAH77282.1| ribosome recycling factor [Desulfovibrio magneticus RS-1] Length = 184 Score = 237 bits (606), Expect = 5e-61, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 117/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ +DRM ++ L K+ LRTGR + S+LD V+V+ YG+ L+Q+A+V + R + Sbjct: 5 LKDAEDRMKKALAALDKEFSRLRTGRATTSLLDGVRVDYYGTATQLDQLASVATPDSRTI 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WD++ A +E+ I +S LGL P+ +G+++RI +P TE+RR LVKVA Y E++K Sbjct: 65 TIQPWDRKAFADIEKAILKSGLGLTPVNDGKIIRISIPPLTEDRRKDLVKVAKKYVEEAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RN+RRD + LKK + SED ++D+QK+TD+ I D F +K+KEIM Sbjct: 125 VAMRNVRRDANELLKKKKNDKAISEDDQRKGQDDVQKLTDNYIVKTDEAFSKKEKEIMEI 184 >gi|237785749|ref|YP_002906454.1| ribosome recycling factor [Corynebacterium kroppenstedtii DSM 44385] gi|259494536|sp|C4LJA6|RRF_CORK4 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|237758661|gb|ACR17911.1| Ribosome recycling factor [Corynebacterium kroppenstedtii DSM 44385] Length = 185 Score = 237 bits (606), Expect = 5e-61, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 120/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++RM ++ + ++D+ T+RTGR +PSM + V+ E YG P+ Q+A ++V EPRML Sbjct: 6 LLESEERMTQSVEYAREDLTTIRTGRANPSMFNGVQAEYYGVMTPITQMATISVPEPRML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ ++ ++ ++E I S+LG+NP +GQVLR+ VP+ TEERR +V++A + E ++ Sbjct: 66 LIKPYEPSIMNAIENAIRNSDLGVNPTNDGQVLRVTVPQLTEERRKEMVRLAKSKGEDAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIRR GMD LK+ +K G+A ED V + E ++ K T + +D E K+KE+M Sbjct: 126 IAIRNIRRKGMDELKRIQKDGEAGEDEVQAAEKELDKTTHEYVSQVDKLIEAKEKELMEV 185 >gi|260888303|ref|ZP_05899566.1| ribosome recycling factor [Selenomonas sputigena ATCC 35185] gi|330838370|ref|YP_004412950.1| ribosome recycling factor [Selenomonas sputigena ATCC 35185] gi|260861839|gb|EEX76339.1| ribosome recycling factor [Selenomonas sputigena ATCC 35185] gi|329746134|gb|AEB99490.1| ribosome recycling factor [Selenomonas sputigena ATCC 35185] Length = 185 Score = 237 bits (606), Expect = 5e-61, Method: Composition-based stats. Identities = 70/176 (39%), Positives = 115/176 (65%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 ++RM T+ L++D +LR GR +P++LD V V+ YG P++QVA + V EPRML+++ Sbjct: 10 EERMKKTLEALRRDFGSLRAGRATPALLDRVMVDYYGQPTPVSQVAAIAVPEPRMLMITP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 W+K ++ +E+ I +S+LGL P +G +R+ +P+ T+ERR LVK + E +K+++R Sbjct: 70 WEKTILHDIEKAIMKSDLGLTPNSDGTAVRLSIPQLTQERRTELVKSLNKKTEDAKVAIR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 NIRRD + +KK K+ + +ED ++D+QK+ D IK +D K+KEIM Sbjct: 130 NIRRDANEQMKKLEKAKEITEDDAKKGQDDMQKLVDKYIKAVDDARVVKEKEIMEV 185 >gi|225024279|ref|ZP_03713471.1| hypothetical protein EIKCOROL_01154 [Eikenella corrodens ATCC 23834] gi|224943304|gb|EEG24513.1| hypothetical protein EIKCOROL_01154 [Eikenella corrodens ATCC 23834] Length = 185 Score = 237 bits (606), Expect = 5e-61, Method: Composition-based stats. Identities = 76/176 (43%), Positives = 115/176 (65%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 + + +M ++ L++++ +RTGR +LD V+VE YGS VP++QVANVT+L+ R + V Sbjct: 8 SAETKMQRSVEVLRENLAKVRTGRAHTGLLDQVEVEYYGSMVPVSQVANVTLLDARTISV 67 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 ++ M A+VE+ I +SNLGLNP G ++R+P+P TEERR L+KV AE ++S Sbjct: 68 KPYEGNMAAAVEKAIRDSNLGLNPASMGDLIRVPMPMLTEERRKDLIKVVRGEAEDGRVS 127 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +RN+RRD DH+KK K + SED E IQK+TD I +D E K++++M Sbjct: 128 IRNVRRDANDHIKKLLKDKEVSEDDARRGEEQIQKLTDKYIAEVDKLLEHKEEDLM 183 >gi|322390000|ref|ZP_08063539.1| ribosome recycling factor [Streptococcus parasanguinis ATCC 903] gi|321143313|gb|EFX38752.1| ribosome recycling factor [Streptococcus parasanguinis ATCC 903] Length = 185 Score = 237 bits (606), Expect = 5e-61, Method: Composition-based stats. Identities = 69/180 (38%), Positives = 112/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+RM + L ++ T+R GR + S+LD + VE YG PLNQ+A++T+ E R+L Sbjct: 6 VEKAKERMTQSHQSLGREFGTIRAGRANASLLDRIFVEYYGVETPLNQLASITIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK + +E I+ +LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LITPFDKSSLKDIEHSINAFDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD MD KK K+ + +ED + LE +IQK+TD +K++D K+KE+M Sbjct: 126 VAIRNIRRDAMDEAKKQEKAKEITEDELKGLEKEIQKVTDDAVKHVDEMTAHKEKELMEV 185 >gi|307264902|ref|ZP_07546464.1| ribosome recycling factor [Thermoanaerobacter wiegelii Rt8.B1] gi|326389448|ref|ZP_08211015.1| ribosome recycling factor [Thermoanaerobacter ethanolicus JW 200] gi|306920160|gb|EFN50372.1| ribosome recycling factor [Thermoanaerobacter wiegelii Rt8.B1] gi|325994453|gb|EGD52878.1| ribosome recycling factor [Thermoanaerobacter ethanolicus JW 200] Length = 184 Score = 237 bits (606), Expect = 5e-61, Method: Composition-based stats. Identities = 82/180 (45%), Positives = 123/180 (68%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ +++M ++S LK ++ +R GR +P++LD + V+ YG+ PLN++A +T EPR+L Sbjct: 5 LKASEEKMQKSLSVLKNELAAIRAGRANPALLDRIMVDYYGTPTPLNRLATITAPEPRVL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV WD ++ +E+ I +S+LG+NP+ +G+VLR+ PE TEERR LVK+ H AE++K Sbjct: 65 VVQPWDVSKISDIEKAIQKSDLGINPVSDGKVLRLVFPELTEERRKELVKLVHKKAEEAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VR IRRD D +KK K+G+ SED E +IQK+TD IK ID E K+KEIM Sbjct: 125 VAVRQIRRDANDAVKKMEKNGEISEDERKKREEEIQKLTDKYIKEIDKAVEAKEKEIMEI 184 >gi|224476382|ref|YP_002633988.1| ribosome recycling factor [Staphylococcus carnosus subsp. carnosus TM300] gi|254809530|sp|B9DPH1|RRF_STACT RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|222420989|emb|CAL27803.1| putative ribosome recycling factor [Staphylococcus carnosus subsp. carnosus TM300] Length = 184 Score = 237 bits (606), Expect = 5e-61, Method: Composition-based stats. Identities = 83/186 (44%), Positives = 122/186 (65%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ + L + RM +I L +++ T+ GR + ++L VKV+ YG+ P+ Q+A++ V Sbjct: 1 MSDI--LSETRSRMKKSIESLSRELATINAGRANSNLLAGVKVDYYGAPTPVQQLASINV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPR+LVVS +DK ++ +ER I+ +NLG+NP +G+V+RI VP TEERR LVK Sbjct: 59 PEPRLLVVSPYDKTSLSDIERAINAANLGVNPSSDGEVIRIMVPALTEERRKELVKDVKK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E +K+S+RNIRRD D LKK K G SED + + +D+QKITD +IK +D EEK+ Sbjct: 119 MGENAKVSIRNIRRDSNDDLKKDEKEGVISEDELRTGTDDVQKITDESIKEVDKVLEEKE 178 Query: 181 KEIMHF 186 K+IM Sbjct: 179 KDIMSV 184 >gi|20807853|ref|NP_623024.1| ribosome recycling factor [Thermoanaerobacter tengcongensis MB4] gi|254479463|ref|ZP_05092790.1| ribosome recycling factor [Carboxydibrachium pacificum DSM 12653] gi|22001937|sp|Q8RA24|RRF_THETN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|20516416|gb|AAM24628.1| Ribosome recycling factor [Thermoanaerobacter tengcongensis MB4] gi|214034606|gb|EEB75353.1| ribosome recycling factor [Carboxydibrachium pacificum DSM 12653] Length = 184 Score = 237 bits (606), Expect = 5e-61, Method: Composition-based stats. Identities = 83/180 (46%), Positives = 122/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ ++RM T++ LK ++ +R GR +P++LD + V YG+ PLN++A +T EPR+L Sbjct: 5 LKDSEERMKKTLNVLKSELAAIRAGRANPALLDRITVNYYGTPTPLNRLATITAPEPRVL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV WD + +E+ I +S+LG+NP+ +G+VLR+ +PE TEERR LVK+ H AE+++ Sbjct: 65 VVQPWDVSQIGEIEKAIQKSDLGINPVSDGKVLRLVLPELTEERRKELVKLVHKKAEEAR 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I+VR IRRD D +KK K G+ SED E +IQK+TD IK ID E K+KEIM Sbjct: 125 IAVRQIRRDANDLVKKMEKDGEISEDERKRREEEIQKLTDKYIKEIDKMVEAKEKEIMEI 184 >gi|319404368|emb|CBI77971.1| Ribosome recycling factor [Bartonella rochalimae ATCC BAA-1498] Length = 186 Score = 237 bits (606), Expect = 5e-61, Method: Composition-based stats. Identities = 98/186 (52%), Positives = 129/186 (69%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ + + ++K RM IS K ++ +LRTGR S S+L+ + VEAYGS VP+NQVAN++V Sbjct: 1 MDITLIMDDLKRRMEGAISSFKHELGSLRTGRASASLLEHLTVEAYGSIVPINQVANISV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E RML VSVWDK MV +VER I +S LGLNPI +G LRIP+PE EERR LVK+A+ Sbjct: 61 PESRMLSVSVWDKTMVGAVERAIRDSGLGLNPITDGVNLRIPLPELNEERRKELVKIAYQ 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 Y E+++I+ R++RRDGMD+LKK K GK +D SL +QK+TD TI ID K+ Sbjct: 121 YTEQARIAARHVRRDGMDNLKKLEKEGKIGQDEARSLSEKVQKLTDETIAEIDKILVLKE 180 Query: 181 KEIMHF 186 EIM Sbjct: 181 TEIMQV 186 >gi|150390448|ref|YP_001320497.1| ribosome recycling factor [Alkaliphilus metalliredigens QYMF] gi|166991551|sp|A6TRM0|RRF_ALKMQ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|149950310|gb|ABR48838.1| ribosome recycling factor [Alkaliphilus metalliredigens QYMF] Length = 185 Score = 237 bits (606), Expect = 5e-61, Method: Composition-based stats. Identities = 68/179 (37%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++++M T+ LK D ++R G+ +PSMLD + V+ YGS PL QVA+V+ EPR+L+ Sbjct: 7 KRLEEKMTKTLGVLKDDFNSIRAGKANPSMLDRITVDYYGSITPLKQVASVSAPEPRLLI 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +D ++ +E+ + S+LGLNP +G+++R+ +P+ TEERR L KV AE+ ++ Sbjct: 67 IQPYDPSVINGIEKALMMSDLGLNPSNDGKIIRLNIPQLTEERRKELTKVVKRVAEEGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN RRD + LKK K + +ED + + ++QKITD K +D +K+ EI+ Sbjct: 127 ALRNGRRDANEQLKKMEKDSELTEDDLKQAQEEVQKITDKFNKQVDEMLVKKELEILEV 185 >gi|90413532|ref|ZP_01221523.1| ribosome releasing factor [Photobacterium profundum 3TCK] gi|90325464|gb|EAS41947.1| ribosome releasing factor [Photobacterium profundum 3TCK] Length = 185 Score = 237 bits (606), Expect = 6e-61, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 118/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++RMG ++ LK ++ +RTGR PS+LD + VE YG++ PL Q+ANV + R L Sbjct: 7 NDAQERMGKSVDALKNQLVKIRTGRAHPSLLDTIYVEYYGANTPLKQLANVVAEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+E+ +E+ I S+LGLNP+ G V+R+P+P TEERR LVK+ AE+ ++ Sbjct: 67 ITVFDRELTPKIEKAIMMSDLGLNPMSAGTVIRVPLPPLTEERRRDLVKIVRKEAEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD LK K + SED +++IQK+TD +KNI++ E K+KE+M Sbjct: 127 AIRNIRRDANADLKALLKDKEISEDDDRRAQDEIQKLTDIAVKNIEAVLEVKEKELMEV 185 >gi|325579128|ref|ZP_08149084.1| ribosome recycling factor [Haemophilus parainfluenzae ATCC 33392] gi|301155649|emb|CBW15117.1| ribosome recycling factor [Haemophilus parainfluenzae T3T1] gi|325159363|gb|EGC71497.1| ribosome recycling factor [Haemophilus parainfluenzae ATCC 33392] Length = 185 Score = 237 bits (605), Expect = 6e-61, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ + RM ++ L+ + +RTGR PS+LD ++VE YG+ PL Q+ANV + R L Sbjct: 7 QDAEARMEKSLEALRGHIAKIRTGRAQPSLLDAIQVEYYGAATPLRQLANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+V+D+ ++++VE+ I S+LGLNP G +R+P+P TEERR L+K+ + E+ K+ Sbjct: 67 VTVFDRSLISAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIVKSEGEQGKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD D +K K + SE+ E IQK+TDS IK +D +K+KE+M F Sbjct: 127 AIRNVRRDANDKIKALLKDKEISENDQHKAEEIIQKVTDSYIKKVDEILADKEKELMDF 185 >gi|148265750|ref|YP_001232456.1| ribosome recycling factor [Geobacter uraniireducens Rf4] gi|189044056|sp|A5G7W5|RRF_GEOUR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|146399250|gb|ABQ27883.1| ribosome recycling factor [Geobacter uraniireducens Rf4] Length = 185 Score = 237 bits (605), Expect = 6e-61, Method: Composition-based stats. Identities = 77/180 (42%), Positives = 113/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + N+ M TI L+K+ +RTGR S +LD +KV+ YG+ P+NQVA + V EPR + Sbjct: 6 INNMSTHMDKTIDALRKEYQRVRTGRASTGLLDEIKVDFYGTPSPINQVATLAVPEPRTI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WD +M+ +E+ I +NLGL P +G+V+R+ +P TEERR +VK AE +K Sbjct: 66 TLQPWDAKMIPVIEKAIMNANLGLTPANDGKVIRLNIPPLTEERRKDIVKQLKKLAEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD +D LKK K K SED + E ++Q +T+S + ID F K+KE+M Sbjct: 126 VAVRNIRRDAIDELKKQEKDKKISEDDLKRAEKEVQDVTNSHVAKIDEVFVHKEKEVMEV 185 >gi|332140473|ref|YP_004426211.1| ribosome recycling factor [Alteromonas macleodii str. 'Deep ecotype'] gi|238693254|sp|B4RVI6|RRF_ALTMD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|327550495|gb|AEA97213.1| ribosome recycling factor [Alteromonas macleodii str. 'Deep ecotype'] Length = 185 Score = 237 bits (605), Expect = 6e-61, Method: Composition-based stats. Identities = 77/186 (41%), Positives = 113/186 (60%), Gaps = 1/186 (0%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M I+L + ++RM ++ LK +RTGR PS+LD + V YG PL QVANV Sbjct: 1 MIDEIEL-DAQERMEKSLVALKGQFSKIRTGRAHPSLLDGIMVPYYGVDTPLKQVANVVA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R L ++V+DK + +VE+ I +S+LGLNP+ G +RIP+P TEERR L++V Sbjct: 60 EDSRTLALTVFDKSAIQAVEKAIMQSDLGLNPMSAGGSIRIPLPPLTEERRKDLIRVVRN 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE ++++RNIRRD +K K + SED + E +IQ IT+ IK +DS +K+ Sbjct: 120 EAEGGRVAIRNIRRDANGDVKDLLKEKEISEDESRAAEENIQSITNEFIKKVDSLLADKE 179 Query: 181 KEIMHF 186 KE+M Sbjct: 180 KELMEV 185 >gi|256003336|ref|ZP_05428327.1| ribosome recycling factor [Clostridium thermocellum DSM 2360] gi|281417721|ref|ZP_06248741.1| ribosome recycling factor [Clostridium thermocellum JW20] gi|255992626|gb|EEU02717.1| ribosome recycling factor [Clostridium thermocellum DSM 2360] gi|281409123|gb|EFB39381.1| ribosome recycling factor [Clostridium thermocellum JW20] gi|316940242|gb|ADU74276.1| ribosome recycling factor [Clostridium thermocellum DSM 1313] Length = 183 Score = 237 bits (605), Expect = 6e-61, Method: Composition-based stats. Identities = 73/179 (40%), Positives = 123/179 (68%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +NI+++M T+S LK ++ T+R GR + ++LD + V+ YG P+NQ+ ++V EPR++V Sbjct: 5 KNIEEKMKKTVSVLKDELNTVRAGRANAAILDRITVDYYGVPTPINQLGTISVPEPRVIV 64 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + WD +++ +E+ I +S++G+NP +G+V+R+ P TEERR L K+A Y E +K+ Sbjct: 65 IQPWDAQILKEIEKEIQKSDIGINPNNDGKVIRLVFPPLTEERRKELTKLAKKYGEDAKV 124 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++R+IRRDG++ +K +K+G+ +ED + S E DIQ +TD I ID E K+KEI+ Sbjct: 125 AIRSIRRDGIEKMKAMKKNGEITEDDLKSAEKDIQNLTDKYIAEIDKLIEIKEKEILEV 183 >gi|34497654|ref|NP_901869.1| ribosome recycling factor [Chromobacterium violaceum ATCC 12472] gi|39932056|sp|Q7NVZ1|RRF_CHRVO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|34103510|gb|AAQ59872.1| ribosome recycling factor [Chromobacterium violaceum ATCC 12472] Length = 185 Score = 237 bits (605), Expect = 6e-61, Method: Composition-based stats. Identities = 71/179 (39%), Positives = 110/179 (61%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + +M T+ K D+ +RTGR +LD V V+ YGS VP+NQVANVT+++ R + Sbjct: 7 KSAEQKMQKTLEAFKNDLAKVRTGRAHTGILDHVMVDYYGSDVPVNQVANVTLIDARTIG 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K M+A +E+ I +S+LGLNP G+++R+P+P TEERR L+KV AE +++ Sbjct: 67 VQPWEKPMLAKIEKAIRDSDLGLNPASMGEIIRVPMPMLTEERRKDLIKVVRGEAEGARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD K K +ED +++IQK+TD ID K+ +++ Sbjct: 127 AVRNIRRDSNTEFKNLLKDKAITEDDERRGQDEIQKLTDKYTAEIDKMLATKEADLLAV 185 >gi|226366024|ref|YP_002783807.1| ribosome recycling factor [Rhodococcus opacus B4] gi|254809526|sp|C1B2U5|RRF_RHOOB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226244514|dbj|BAH54862.1| ribosome recycling factor [Rhodococcus opacus B4] Length = 185 Score = 237 bits (605), Expect = 6e-61, Method: Composition-based stats. Identities = 64/180 (35%), Positives = 110/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M ++ K D+ ++RTGR +P M + + ++ YG+ P+ Q+A++ V E R++ Sbjct: 6 LFEAEEKMEKAVTVAKDDLGSIRTGRANPGMFNRIGIDYYGAFTPITQLASINVPEARLV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV ++ + ++E I S+LG+NP +G ++RI VP+ TEERR LVK A + E +K Sbjct: 66 VVKPYEASQLNAIETAIRNSDLGVNPSNDGNLIRISVPQLTEERRRELVKQAKSKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +SVRN+RR MD L + +K G+A ED V E ++ K T + +D + K+ E++ Sbjct: 126 VSVRNVRRKAMDELSRIQKDGEAGEDEVGRAEKELDKTTARYVAQVDELVKHKEAELLEV 185 >gi|169830793|ref|YP_001716775.1| ribosome recycling factor [Candidatus Desulforudis audaxviator MP104C] gi|169637637|gb|ACA59143.1| ribosome recycling factor [Candidatus Desulforudis audaxviator MP104C] Length = 174 Score = 237 bits (605), Expect = 6e-61, Method: Composition-based stats. Identities = 74/174 (42%), Positives = 113/174 (64%), Gaps = 1/174 (0%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M TI L ++ +LR GR +P++LD + V+ YGS +P+NQ+A V+V E R+LV+ WDK Sbjct: 1 MMKTIEVLDREFASLRAGRATPALLDRITVDYYGSTIPINQLATVSVPEARLLVIQPWDK 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 + +ER I +S+LG+ P +G ++R+ VP+ TEERR LVK E++K++VRNIR Sbjct: 61 SAIGEIERAILKSDLGITPSSDGNIIRLAVPQLTEERRRDLVKFLKKRGEEAKVAVRNIR 120 Query: 134 RDGMDHLKKSRKS-GKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RD ++ LK +K G SED + +++ QK+TD +K ID K+KE+M Sbjct: 121 RDVIERLKALQKEGGGFSEDDLRREQDEAQKLTDRYVKEIDRIVAAKEKEVMEI 174 >gi|70726656|ref|YP_253570.1| ribosome recycling factor [Staphylococcus haemolyticus JCSC1435] gi|123660049|sp|Q4L5W1|RRF_STAHJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|68447380|dbj|BAE04964.1| ribosome recycling factor [Staphylococcus haemolyticus JCSC1435] Length = 184 Score = 237 bits (605), Expect = 6e-61, Method: Composition-based stats. Identities = 81/186 (43%), Positives = 121/186 (65%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ +I Q+ K RM +I L +++ + GR + ++L V V+ YG+ P+ Q+A++ V Sbjct: 1 MSDII--QDTKARMSKSIDNLSRELANISAGRANSNLLSGVTVDYYGAPTPVQQLASINV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R+LV+S +DK VA +E+ I+ +NLG+NP +G+V+RI VP TEERR LVK Sbjct: 59 PEARLLVISPYDKSSVADIEKAIYAANLGVNPTSDGEVIRITVPALTEERRKELVKNVKK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E +K+S+RNIRRD D LKK K+G +ED + S D+QK TD++IK ID E+K+ Sbjct: 119 IGEDAKVSIRNIRRDINDQLKKDEKNGDITEDDLRSQTEDVQKATDNSIKEIDQLVEDKE 178 Query: 181 KEIMHF 186 K+IM Sbjct: 179 KDIMSV 184 >gi|323701848|ref|ZP_08113518.1| ribosome recycling factor [Desulfotomaculum nigrificans DSM 574] gi|323533152|gb|EGB23021.1| ribosome recycling factor [Desulfotomaculum nigrificans DSM 574] Length = 184 Score = 237 bits (605), Expect = 6e-61, Method: Composition-based stats. Identities = 76/180 (42%), Positives = 117/180 (65%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + N ++ M T+ ++K+ +LR GR +P++LD V V YG+ PLNQ+AN++V E R L Sbjct: 6 IANAEENMKKTVEVVRKEFASLRAGRATPALLDKVVVSYYGTPTPLNQLANISVPEARSL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK + +ER I +S+LG+ P +G V+R+ +P+ T+ERR LVKV AE+ + Sbjct: 66 VIQPWDKSALPEIERAILKSDLGITPTSDGTVIRLTIPQLTQERRAELVKVVKKKAEEGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRR+ +D +K +K G ED V + D+QKITD IK ID + K++EIM Sbjct: 126 VAIRNIRREVIDQIKAKQKEG-VPEDEVKRGQEDMQKITDKFIKEIDEMVKSKEQEIMQV 184 >gi|239994190|ref|ZP_04714714.1| ribosome recycling factor [Alteromonas macleodii ATCC 27126] Length = 185 Score = 237 bits (605), Expect = 6e-61, Method: Composition-based stats. Identities = 77/186 (41%), Positives = 113/186 (60%), Gaps = 1/186 (0%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M I+L + ++RM ++ LK +RTGR PS+LD + V YG PL QVANV Sbjct: 1 MIDEIEL-DAQERMEKSLVSLKGQFSKIRTGRAHPSLLDGIMVPYYGVDTPLKQVANVVA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R L ++V+DK + +VE+ I +S+LGLNP+ G +RIP+P TEERR L++V Sbjct: 60 EDSRTLALTVFDKSAIQAVEKAIMQSDLGLNPMSAGGSIRIPLPPLTEERRKDLIRVVRN 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE ++++RNIRRD +K K + SED + E +IQ IT+ IK +DS +K+ Sbjct: 120 EAEGGRVAIRNIRRDANGDIKDLLKEKEISEDESRAAEENIQSITNDFIKKVDSMLADKE 179 Query: 181 KEIMHF 186 KE+M Sbjct: 180 KELMEV 185 >gi|296876070|ref|ZP_06900124.1| ribosome recycling factor [Streptococcus parasanguinis ATCC 15912] gi|312868288|ref|ZP_07728488.1| ribosome recycling factor [Streptococcus parasanguinis F0405] gi|296432781|gb|EFH18574.1| ribosome recycling factor [Streptococcus parasanguinis ATCC 15912] gi|311096033|gb|EFQ54277.1| ribosome recycling factor [Streptococcus parasanguinis F0405] Length = 185 Score = 237 bits (605), Expect = 6e-61, Method: Composition-based stats. Identities = 69/180 (38%), Positives = 113/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+RM + L ++ ++R GR + S+LD + VE YG PLNQ+A++T+ E R+L Sbjct: 6 VEKAKERMTQSHQSLGREFGSIRAGRANASLLDRIFVEYYGVETPLNQLASITIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK + +E I+ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LITPFDKSSLKDIEHSINASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD MD KK K+ + +ED + LE +IQK+TD +K++D K+KE+M Sbjct: 126 VAIRNIRRDAMDEAKKQEKAKEITEDELKGLEKEIQKVTDDAVKHVDEMTAHKEKELMEV 185 >gi|256784931|ref|ZP_05523362.1| ribosome recycling factor [Streptomyces lividans TK24] Length = 186 Score = 237 bits (605), Expect = 7e-61, Method: Composition-based stats. Identities = 63/180 (35%), Positives = 106/180 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K+D +RTGR P+M + + E YG+ P+NQ+A+ +V EPRM Sbjct: 7 LLEAEEKMEKAVVVAKEDFAAIRTGRAHPAMFNKIVAEYYGAPTPINQLASFSVPEPRMA 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV+ +DK + ++E+ I +S+LG+NP +G ++R+ PE TEERR +KVA A E +K Sbjct: 67 VVTPFDKTALRNIEQAIRDSDLGVNPSNDGNIIRVTFPELTEERRREYIKVAKAKGEDAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+R++RR D + K K G+ ED E ++ T + +D + K+ E++ Sbjct: 127 VSIRSVRRKAKDSIDKMVKDGEVGEDEGRRAEKELDDTTAKYVAQVDELLKHKEAELLEV 186 >gi|254415746|ref|ZP_05029504.1| ribosome recycling factor [Microcoleus chthonoplastes PCC 7420] gi|196177452|gb|EDX72458.1| ribosome recycling factor [Microcoleus chthonoplastes PCC 7420] Length = 173 Score = 237 bits (605), Expect = 7e-61, Method: Composition-based stats. Identities = 64/170 (37%), Positives = 101/170 (59%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M + ++ T+RTGR + S+LD V VE YGS PL +A++ + + + +DK Sbjct: 1 MKKAVEATQRGFNTIRTGRANASLLDRVMVEYYGSPTPLKSLASINTPDATTITIQPYDK 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 + +E+ I S++GL P +GQV+R+ +P T ERR VK+A AE+ K+S+RNIR Sbjct: 61 STLTLIEKSISLSDIGLTPNNDGQVVRLNIPPLTSERRQEFVKMAGKLAEEGKVSIRNIR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 RD +D ++K K+ + SED L++ IQ++TD ID K+K+I Sbjct: 121 RDAVDSVRKQEKNSEISEDESRDLQDQIQQLTDKYTAKIDDLLVAKEKDI 170 >gi|209695848|ref|YP_002263778.1| ribosome recycling factor [Aliivibrio salmonicida LFI1238] gi|226749946|sp|B6EK54|RRF_ALISL RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|208009801|emb|CAQ80108.1| ribosome recycling factor [Aliivibrio salmonicida LFI1238] Length = 185 Score = 237 bits (605), Expect = 7e-61, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 116/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK +++ +RTGR PS+L + VE YG+ P+NQVAN+ + R L Sbjct: 7 KDAQERMEKSVEALKNNLLKIRTGRAHPSLLSGLSVEYYGARTPINQVANIIAEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DKE+ VE+ I S+LGLNP+ G V+R+P+P TEERR +LVK+ AE ++ Sbjct: 67 ITVFDKELAGLVEKAIMMSDLGLNPMSAGTVIRVPLPPLTEERRKSLVKIVRGEAENGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD +K K + SED +++IQK+TD +KNID K+KE+M Sbjct: 127 AVRNIRRDANGDIKALLKDKEISEDDDRRTQDEIQKLTDIAVKNIDDVLAVKEKELMEV 185 >gi|114321011|ref|YP_742694.1| ribosome recycling factor [Alkalilimnicola ehrlichii MLHE-1] gi|122311395|sp|Q0A7I3|RRF_ALHEH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|114227405|gb|ABI57204.1| ribosome recycling factor [Alkalilimnicola ehrlichii MLHE-1] Length = 185 Score = 237 bits (605), Expect = 7e-61, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 110/179 (61%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM +I + ++ +RTGR ++LD + V YG+ VPLNQ A+V V + R L Sbjct: 7 KDAETRMKKSIEAFRAELRKIRTGRAHTNLLDHISVTYYGTEVPLNQAASVKVEDARTLS 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V ++K MV VE+ I S+LGL P G V+RIP+P TE+RR LVKV + AE++++ Sbjct: 67 VIPFEKSMVPEVEKAIQSSDLGLTPTTAGTVIRIPMPPLTEDRRKELVKVVRSEAEQARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD LK+ K + SED E+ IQK+TD +D +EK+KE+M Sbjct: 127 AIRNIRRDANSDLKELLKEKEISEDEERGGEDAIQKLTDKYTGEVDRILQEKEKELMEI 185 >gi|295094737|emb|CBK83828.1| ribosome recycling factor [Coprococcus sp. ART55/1] Length = 181 Score = 237 bits (605), Expect = 7e-61, Method: Composition-based stats. Identities = 72/180 (40%), Positives = 111/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M ++ L+ + T+R GR +P++L+ +KVE YG P+ Q+AN+TV E R L Sbjct: 2 LTQYEEKMQKSVENLEAEYATIRAGRANPNILNKIKVEYYGVPTPMQQLANITVPEARTL 61 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V++ W+ +V +E+ I S+LG+ P +G+ + + PE TE+RR LVK E +K Sbjct: 62 VIAPWEPSLVKEIEKAIMNSDLGITPNNDGRNIILNFPELTEDRRKELVKDIKKKGEGAK 121 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD D +KK K+G SED + E+ IQK+TD + ID E K KEIM Sbjct: 122 VAIRNIRRDANDAIKKMEKNGDISEDELKDNEDKIQKLTDKYVGQIDKAVESKSKEIMTV 181 >gi|255638439|gb|ACU19529.1| unknown [Glycine max] Length = 261 Score = 237 bits (605), Expect = 7e-61, Method: Composition-based stats. Identities = 68/179 (37%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ K RM TI ++ + ++RTGR +PSMLD ++VE YGS V L +A ++ + L+ Sbjct: 83 KDAKTRMDRTIDNVRTNFSSIRTGRANPSMLDKIQVEYYGSPVSLKSIAQISTPDASSLL 142 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +DK + ++E+ I S+LG+ P +G+++R+ +P+ T +RR L K+ AE+ K+ Sbjct: 143 VQPYDKSSLKAIEKAIVSSDLGMTPNNDGELIRLSIPQLTSDRRKELSKIVAKQAEEGKV 202 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD + K K K SED V L +D+QK+TD +K +D+ F++K+KE++ Sbjct: 203 ALRNIRRDALKAYDKLEKEKKLSEDNVKDLSSDLQKLTDEYMKKVDTIFKQKEKELLTV 261 >gi|194099964|ref|YP_002003103.1| ribosome recycling factor [Neisseria gonorrhoeae NCCP11945] gi|291042824|ref|ZP_06568565.1| ribosome-recycling factor [Neisseria gonorrhoeae DGI2] gi|293398155|ref|ZP_06642360.1| ribosome recycling factor [Neisseria gonorrhoeae F62] gi|193935254|gb|ACF31078.1| Rrf [Neisseria gonorrhoeae NCCP11945] gi|291013258|gb|EFE05224.1| ribosome-recycling factor [Neisseria gonorrhoeae DGI2] gi|291611418|gb|EFF40488.1| ribosome recycling factor [Neisseria gonorrhoeae F62] Length = 208 Score = 237 bits (605), Expect = 7e-61, Method: Composition-based stats. Identities = 77/186 (41%), Positives = 117/186 (62%), Gaps = 1/186 (0%) Query: 2 NQVIDLQN-IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 N + D+Q + +M ++ LK+++ +RTGR +LD V+VE +GS VP++QVANVT+ Sbjct: 23 NMINDIQKTAEGKMQRSVEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVANVTL 82 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 L+ R + V ++ M A VE+ I +SNLGLNP G ++R+P+P TEERR L+KV Sbjct: 83 LDARTIGVKPFEGNMAAKVEKAIRDSNLGLNPAAVGDLIRVPMPMLTEERRKDLIKVVRG 142 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE+ ++S+RN+RRD DH+KK K + SED E +QK+TD I D K+ Sbjct: 143 EAEEGRVSIRNVRRDANDHIKKLLKDKEISEDEARRGEEAVQKLTDKYIAEADKVLAAKE 202 Query: 181 KEIMHF 186 +++M Sbjct: 203 EDLMAV 208 >gi|323143563|ref|ZP_08078240.1| ribosome recycling factor [Succinatimonas hippei YIT 12066] gi|322416626|gb|EFY07283.1| ribosome recycling factor [Succinatimonas hippei YIT 12066] Length = 185 Score = 237 bits (605), Expect = 7e-61, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 109/179 (60%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ RM I L + +RTGR P +LD + V+ YGS PL QVA V V + R L Sbjct: 7 QDASVRMQKAIDSLSSRLAKIRTGRAQPGILDGIMVDYYGSPTPLRQVAQVNVEDARTLK 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ + VE+ I +S+LGLNP+V G +R+P+P TEERR LVKV E++++ Sbjct: 67 LTVFDRNAIKDVEKAIQKSDLGLNPVVAGIDIRVPLPPLTEERRKDLVKVVRGEIEQTRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +RNIRRD + LK K+ + SED E+ IQK+TD+++K D K+KE+M Sbjct: 127 EIRNIRRDANNELKALEKAKEISEDEQHGGEDQIQKLTDASVKKCDELLAAKEKELMEI 185 >gi|313679984|ref|YP_004057723.1| ribosome recycling factor [Oceanithermus profundus DSM 14977] gi|313152699|gb|ADR36550.1| ribosome recycling factor [Oceanithermus profundus DSM 14977] Length = 185 Score = 237 bits (605), Expect = 7e-61, Method: Composition-based stats. Identities = 72/178 (40%), Positives = 117/178 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + ++ M T+ + ++ TLRTGR +P++L+ +KV+ YGS +PLNQ+A+++ + R L Sbjct: 6 FKETREHMQKTLEVFESNLATLRTGRANPALLEHIKVDYYGSMMPLNQLASISAPDARTL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV WD+ + +E+ I +S+LGLNP +G L I +P T ERR +VK AH YAE+++ Sbjct: 66 VVQAWDQNALPLIEKAIRDSDLGLNPNNQGDTLFINIPALTAERRKEIVKAAHNYAEEAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++VRNIRRD + +KK + ED V E ++Q++TD I+ I++ E K+KEI+ Sbjct: 126 VAVRNIRRDALHRIKKMSEEEHLPEDDVKRAEKEVQELTDEFIEKINAELEAKEKEIL 183 >gi|332186160|ref|ZP_08387906.1| ribosome recycling factor [Sphingomonas sp. S17] gi|332013975|gb|EGI56034.1| ribosome recycling factor [Sphingomonas sp. S17] Length = 185 Score = 237 bits (605), Expect = 7e-61, Method: Composition-based stats. Identities = 90/169 (53%), Positives = 117/169 (69%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D +++ RM + LK D+ LRTGR S ++LD V VE YGSH+PLNQVA V+ EPR Sbjct: 4 YDKSDLERRMQGAVESLKHDLNGLRTGRASTALLDPVTVEVYGSHMPLNQVATVSAPEPR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 ML V VWDK V+SVE+ I + LGLNPI +GQ LR+P+P+ TEERR L K+A+ YAE Sbjct: 64 MLSVQVWDKSNVSSVEKAIRSAGLGLNPINDGQTLRLPIPDLTEERRKELAKLANKYAES 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNID 173 ++I+VRN+RRDGMD LK K G ED E ++QK+TD+TI +D Sbjct: 124 ARIAVRNVRRDGMDSLKTDEKKGVFGEDERKRHETEVQKLTDATIAELD 172 >gi|91792914|ref|YP_562565.1| ribosome recycling factor [Shewanella denitrificans OS217] gi|123061015|sp|Q12NY4|RRF_SHEDO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|91714916|gb|ABE54842.1| ribosome recycling factor [Shewanella denitrificans OS217] Length = 185 Score = 237 bits (605), Expect = 7e-61, Method: Composition-based stats. Identities = 80/180 (44%), Positives = 116/180 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + ++RMG + K M +RTGR PS+LD ++V YG+ PL QVANV + + R L Sbjct: 6 LLDAQERMGKCVDATKNQMAKVRTGRAHPSLLDSIQVSYYGAMSPLKQVANVGIEDSRTL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+V+D+ MV +VE+ I S+LGLNP+ G LRIP+P TEERR +KV AE + Sbjct: 66 SVTVFDRSMVQAVEKAIMTSDLGLNPMTAGATLRIPLPALTEERRKDFIKVVRNEAENGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RN+RRD + +KK K+ + +ED V E+++QK TD+ IKN+D K+KE+M Sbjct: 126 IAIRNVRRDAISEVKKLEKAKECTEDDVRRSEDEVQKYTDAHIKNVDEVLTAKEKELMEV 185 >gi|332530832|ref|ZP_08406758.1| ribosome recycling factor [Hylemonella gracilis ATCC 19624] gi|332039744|gb|EGI76144.1| ribosome recycling factor [Hylemonella gracilis ATCC 19624] Length = 187 Score = 237 bits (605), Expect = 7e-61, Method: Composition-based stats. Identities = 82/187 (43%), Positives = 120/187 (64%), Gaps = 1/187 (0%) Query: 1 MNQVIDLQ-NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVT 59 M + D++ N++ +M +I LK ++ +RTGR +P++LD V+VE YGS VPL+QVANV Sbjct: 1 MTTIADIKKNVEGKMDQSIEALKNNLSKIRTGRANPALLDAVQVEYYGSMVPLSQVANVA 60 Query: 60 VLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 +L+ R + V W+K M A +E+ I ES+LGLNP G ++R+P+P +EERR + K+ Sbjct: 61 LLDARTISVQPWEKGMGAKIEKAIRESDLGLNPASMGDLIRVPMPPMSEERRKEMTKLVR 120 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 E +KI+VRN+RRDG + +KK K ASED E DIQK TD + ID K Sbjct: 121 NEGEAAKIAVRNLRRDGNEAVKKLVKDKTASEDDQKRAEADIQKFTDKHVATIDQLVAAK 180 Query: 180 KKEIMHF 186 ++E+M Sbjct: 181 EQEVMAV 187 >gi|87118624|ref|ZP_01074523.1| ribosome recycling factor [Marinomonas sp. MED121] gi|86166258|gb|EAQ67524.1| ribosome recycling factor [Marinomonas sp. MED121] Length = 185 Score = 236 bits (604), Expect = 7e-61, Method: Composition-based stats. Identities = 72/180 (40%), Positives = 113/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + ++RMG +I+ ++ +RTGR PS+LD V+++ YGS PL+QVAN+TV + R L Sbjct: 6 LLDAEERMGKSITAVETAFKKIRTGRAHPSILDSVRIDYYGSDTPLSQVANITVEDARTL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +S W+K +V +E+ I +S+LGLNP G ++RIP+P TEE R K A A AE ++ Sbjct: 66 GISPWEKNLVPEIEKAIMKSDLGLNPSTTGGLIRIPMPALTEETRKNYFKQAKAEAESAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+RNIRRD K K + SED ++ +QK+TD + ++ +K+K++M Sbjct: 126 VSIRNIRRDANAGFKSLVKEKEISEDDDRRAQDLVQKLTDKYVAEVEDRLAKKEKDLMAI 185 >gi|294631670|ref|ZP_06710230.1| ribosome recycling factor [Streptomyces sp. e14] gi|292835003|gb|EFF93352.1| ribosome recycling factor [Streptomyces sp. e14] Length = 185 Score = 236 bits (604), Expect = 8e-61, Method: Composition-based stats. Identities = 61/180 (33%), Positives = 105/180 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K+D +RTGR P+M + + + YG+ P+NQ+A+ +V EPRM Sbjct: 6 LLEAEEKMEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGAPTPINQLASFSVPEPRMA 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV+ +DK + ++E+ I +S+LG+NP +G ++R+ PE TEERR +KVA E +K Sbjct: 66 VVTPFDKTALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEERRREYIKVAKGKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+R++RR D + K K G+ ED E ++ T + +D + K+ E++ Sbjct: 126 VSIRSVRRKAKDAIDKLVKDGEVGEDEGRRAEKELDDTTAKYVAQVDELLKHKESELLEV 185 >gi|21223982|ref|NP_629761.1| ribosome recycling factor [Streptomyces coelicolor A3(2)] gi|289768824|ref|ZP_06528202.1| ribosome recycling factor [Streptomyces lividans TK24] gi|6831642|sp|O86770|RRF_STRCO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|3319759|emb|CAA19925.1| ribosome recycling factor [Streptomyces coelicolor A3(2)] gi|289699023|gb|EFD66452.1| ribosome recycling factor [Streptomyces lividans TK24] Length = 185 Score = 236 bits (604), Expect = 8e-61, Method: Composition-based stats. Identities = 63/180 (35%), Positives = 106/180 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K+D +RTGR P+M + + E YG+ P+NQ+A+ +V EPRM Sbjct: 6 LLEAEEKMEKAVVVAKEDFAAIRTGRAHPAMFNKIVAEYYGAPTPINQLASFSVPEPRMA 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV+ +DK + ++E+ I +S+LG+NP +G ++R+ PE TEERR +KVA A E +K Sbjct: 66 VVTPFDKTALRNIEQAIRDSDLGVNPSNDGNIIRVTFPELTEERRREYIKVAKAKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+R++RR D + K K G+ ED E ++ T + +D + K+ E++ Sbjct: 126 VSIRSVRRKAKDSIDKMVKDGEVGEDEGRRAEKELDDTTAKYVAQVDELLKHKEAELLEV 185 >gi|148826547|ref|YP_001291300.1| ribosome recycling factor [Haemophilus influenzae PittEE] gi|148716707|gb|ABQ98917.1| ribosome recycling factor [Haemophilus influenzae PittEE] Length = 173 Score = 236 bits (604), Expect = 8e-61, Method: Composition-based stats. Identities = 73/173 (42%), Positives = 110/173 (63%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M ++ LK + +RTGR PS+LD ++VE YG+ PL Q+ANV + R L V+V+D+ Sbjct: 1 MEKSLEALKGHISKIRTGRAQPSLLDAIQVEYYGAATPLRQLANVVAEDARTLAVTVFDR 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 ++++VE+ I S+LGLNP G +R+P+P TEERR L+K+ E+ K+++RN+R Sbjct: 61 SLISAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRNLIKIVKGEGEQGKVAIRNVR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RD D +K K + SE+ E +IQKITD IK +D +K+KE+M F Sbjct: 121 RDANDKIKALLKDKEISENEQHKAEEEIQKITDIYIKKVDEVLADKEKELMDF 173 >gi|82701793|ref|YP_411359.1| ribosome recycling factor [Nitrosospira multiformis ATCC 25196] gi|123544950|sp|Q2YBA4|RRF_NITMU RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|82409858|gb|ABB73967.1| ribosome recycling factor [Nitrosospira multiformis ATCC 25196] Length = 185 Score = 236 bits (604), Expect = 8e-61, Method: Composition-based stats. Identities = 70/179 (39%), Positives = 112/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + +M ++ LK D+ +RTGR +LD V V+ YG+ +NQVAN+++ + R + Sbjct: 7 KSAEQKMQKSLEALKLDLGKIRTGRAHTGLLDHVTVDYYGNPTAINQVANISLADARTIT 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+ W+K+M+ ++E+ I S+LGLNP G+++R+P+P TEERR L KV E +++ Sbjct: 67 VAPWEKKMLGAIEKAIRNSDLGLNPTTVGELIRVPMPPLTEERRRDLTKVVKHEGEAARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD HLK K K +ED + DIQK+TD I +ID + K+ E+M Sbjct: 127 AMRNIRRDANAHLKDLLKEKKIAEDEERKGQEDIQKLTDRYIADIDKLLQAKEAELMAV 185 >gi|95928705|ref|ZP_01311451.1| ribosome recycling factor [Desulfuromonas acetoxidans DSM 684] gi|95135050|gb|EAT16703.1| ribosome recycling factor [Desulfuromonas acetoxidans DSM 684] Length = 185 Score = 236 bits (604), Expect = 8e-61, Method: Composition-based stats. Identities = 70/180 (38%), Positives = 113/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + + M I LK+++ +RTGR S S+LD V V+ YG+ PLNQV ++V E R++ Sbjct: 6 MSKERKSMDGAIDALKRELSKVRTGRASVSLLDEVCVDYYGTPTPLNQVGTLSVPEARLI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + W+K ++ +E+ I +S+LGL P +G ++RI +P TEERR +VK+ + +E++K Sbjct: 66 TIQPWEKNLLPEIEKAIFKSDLGLTPSSDGDLIRISIPPLTEERRKEMVKLVKSKSEETK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 IS+R+ RRDG D LKK K + +ED + E ++Q +TD ++ D EK+KE+M Sbjct: 126 ISIRSSRRDGNDALKKLEKDKEITEDDLKRSEKEMQDLTDKYVQKCDDIVAEKEKELMEV 185 >gi|291519555|emb|CBK74776.1| ribosome recycling factor [Butyrivibrio fibrisolvens 16/4] Length = 173 Score = 236 bits (604), Expect = 8e-61, Method: Composition-based stats. Identities = 71/173 (41%), Positives = 110/173 (63%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M + + L+ + T+R GR +P +LD + V+ YG+ PL QVAN++V EPR++ + W+ Sbjct: 1 MTKSYNNLESEFTTIRAGRANPHILDKITVDYYGAPTPLQQVANISVPEPRLIQIQPWEP 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 +V +E+ I+ S++G+NP +G+++R+ PE TEERR + K + E +K+++RNIR Sbjct: 61 SLVKEIEKAINMSDIGINPTNDGKLIRLVFPELTEERRKEIAKDVKKHGEDAKVAIRNIR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RD +DHLKK K SED + LE+ QK+TD I +D E K KEIM Sbjct: 121 RDAIDHLKKHSKDEGVSEDEIKDLEDKCQKMTDKFIAEVDKAVEAKTKEIMTV 173 >gi|269101942|ref|ZP_06154639.1| ribosome recycling factor [Photobacterium damselae subsp. damselae CIP 102761] gi|268161840|gb|EEZ40336.1| ribosome recycling factor [Photobacterium damselae subsp. damselae CIP 102761] Length = 185 Score = 236 bits (604), Expect = 8e-61, Method: Composition-based stats. Identities = 81/179 (45%), Positives = 119/179 (66%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ K RM ++ LK + +RTGR PS+LD + VE YG++ PLNQVANV + R L Sbjct: 7 QDAKTRMEKSVDALKSQLAKVRTGRAHPSLLDTIYVEYYGANTPLNQVANVVAEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+E+ VE+ I S+LGLNP+ G V+R+P+P TEERR LVK+ A AE+ ++ Sbjct: 67 ITVFDRELAPKVEKAIMMSDLGLNPMSAGTVIRVPLPALTEERRRDLVKIVRAEAEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD ++K K + SED +++IQK+TD IK+I++ E K+KE+M Sbjct: 127 AVRNIRRDANANVKALLKDKEISEDDDRRAQDEIQKLTDDAIKSIEAVLEVKEKELMEV 185 >gi|296387840|ref|ZP_06877315.1| ribosome recycling factor [Pseudomonas aeruginosa PAb1] Length = 185 Score = 236 bits (604), Expect = 8e-61, Method: Composition-based stats. Identities = 78/179 (43%), Positives = 110/179 (61%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++RMG T+ L +RTGR PS+LD V V YG+ PL QVANVTV + R L Sbjct: 7 KEAQERMGKTLEALGHAFAKIRTGRAHPSILDSVMVSYYGADTPLRQVANVTVEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DK M+ +VE+ I S+LGLNP G +R+P+P TEE R K A A AE++++ Sbjct: 67 LAVFDKSMIQAVEKAIMTSDLGLNPATAGTTIRVPMPGLTEETRKGYTKQARAEAEQARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRNIRRD + LK +K + SED +D+QK+TD I I+ E K+ ++M Sbjct: 127 SVRNIRRDALAQLKDLQKEKEISEDEERRAGDDVQKLTDKFIGEIEKALEAKEADLMAV 185 >gi|260426114|ref|ZP_05780093.1| ribosome recycling factor [Citreicella sp. SE45] gi|260420606|gb|EEX13857.1| ribosome recycling factor [Citreicella sp. SE45] Length = 187 Score = 236 bits (604), Expect = 8e-61, Method: Composition-based stats. Identities = 87/188 (46%), Positives = 126/188 (67%), Gaps = 3/188 (1%) Query: 1 MNQVIDLQ--NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 M++ +L ++K RM +S L+ + +LRTGR S SML+ V+VEAYG P+NQV V Sbjct: 1 MSEDFELDTDDLKRRMDGAMSNLRTEFASLRTGRASGSMLEPVQVEAYGQMTPINQVGTV 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 V EPRM+ ++VWDK +V VE+ I ES LG+NP + G ++ +P+PE EERR L KVA Sbjct: 61 NVPEPRMVTINVWDKGLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRRELTKVA 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 YAE +++++RN+RRDGMD +KK++ G +ED E+++Q ITD IK +D E Sbjct: 121 GHYAEHARVAIRNVRRDGMDQVKKAKADG-MAEDDQKFWESEVQDITDLYIKKVDEALEH 179 Query: 179 KKKEIMHF 186 K++EIM Sbjct: 180 KQEEIMQV 187 >gi|308270379|emb|CBX26991.1| Ribosome-recycling factor [uncultured Desulfobacterium sp.] Length = 191 Score = 236 bits (604), Expect = 9e-61, Method: Composition-based stats. Identities = 78/180 (43%), Positives = 120/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 Q +++ MG +I+ L+ ++ +RTGR S S+LD ++V+ YG+ PLNQ+A+++V E R++ Sbjct: 12 FQEVRENMGKSIAALQNELKRVRTGRASLSILDGIRVDYYGTLTPLNQIASLSVPESRLI 71 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V WD + +E+ I +S+LGL P +G+++RI +P TE+RR LVKV H E K Sbjct: 72 TVQPWDVSAIKEIEKAILKSDLGLTPSSDGKIIRISIPPLTEDRRKKLVKVVHKMCEDYK 131 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I+VRNIRRD + +K +K G +ED ++ IQKITD IK ID ++EK+KEI+ F Sbjct: 132 IAVRNIRRDSNESIKGFKKDGDLAEDAAFKAQDSIQKITDEHIKLIDGIYKEKEKEILEF 191 >gi|332527873|ref|ZP_08403910.1| ribosome recycling factor [Rubrivivax benzoatilyticus JA2] gi|332112450|gb|EGJ12243.1| ribosome recycling factor [Rubrivivax benzoatilyticus JA2] Length = 186 Score = 236 bits (604), Expect = 9e-61, Method: Composition-based stats. Identities = 77/184 (41%), Positives = 114/184 (61%), Gaps = 1/184 (0%) Query: 4 VIDLQN-IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLE 62 + D+Q ++M ++ K ++ +RTGR P +LD V VE YGS +P++QVANV++L+ Sbjct: 3 IADIQKTAAEKMAKSVDAFKNELHKIRTGRAHPGILDQVHVEYYGSMLPISQVANVSLLD 62 Query: 63 PRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 R + V W+K M +E+ I ES+LGLNP +G +LR+P+P TEERR L KV Sbjct: 63 ARTISVQPWEKGMGPKIEKAIRESDLGLNPSAQGDLLRVPMPALTEERRKELTKVVRHTG 122 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 E++KI VR +RRD D LKK K SED ++++Q++TD TI ID + K+ E Sbjct: 123 EEAKIHVRAVRRDANDQLKKLVKDKLVSEDDERRGQDEVQRLTDRTIAEIDKLVQAKEAE 182 Query: 183 IMHF 186 +M Sbjct: 183 VMAV 186 >gi|114331998|ref|YP_748220.1| ribosome recycling factor [Nitrosomonas eutropha C91] gi|122313298|sp|Q0AEH7|RRF_NITEC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|114309012|gb|ABI60255.1| ribosome recycling factor [Nitrosomonas eutropha C91] Length = 185 Score = 236 bits (604), Expect = 9e-61, Method: Composition-based stats. Identities = 67/184 (36%), Positives = 113/184 (61%), Gaps = 1/184 (0%) Query: 4 VIDLQNIKD-RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLE 62 + D++ + +M ++ LK D +R+GR +LD + V+ YG+ P+ Q+ANVT+ + Sbjct: 2 IADIKKATEQKMQKSLDALKVDFSKVRSGRPHTGLLDHITVDYYGTPTPIRQLANVTLAD 61 Query: 63 PRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 R + V WDK+ +++E+ I +S++GLNP+ G+++R+P+P TEERR L K+ A Sbjct: 62 ARTIGVIPWDKKAFSAIEKAIRDSDMGLNPMTAGEMVRVPMPPLTEERRKDLTKIVRTEA 121 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 E ++I++RNIRRD LK+ K +ED ++DIQK+TD I +D + K+ E Sbjct: 122 ETARIAMRNIRRDANTQLKELLKDKLIAEDEDRRAQDDIQKLTDRYIAEVDKLLQAKEAE 181 Query: 183 IMHF 186 +M Sbjct: 182 LMAV 185 >gi|56696546|ref|YP_166903.1| ribosome recycling factor [Ruegeria pomeroyi DSS-3] gi|60390661|sp|Q5LSV2|RRF_SILPO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|56678283|gb|AAV94949.1| ribosome recycling factor [Ruegeria pomeroyi DSS-3] Length = 187 Score = 236 bits (604), Expect = 9e-61, Method: Composition-based stats. Identities = 85/182 (46%), Positives = 123/182 (67%), Gaps = 1/182 (0%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 +D ++K RM ++ LK + +LRTGR S SML+ ++VEAYG P+NQ+ V V EPR Sbjct: 7 LDTDDLKRRMDGAMANLKTEFASLRTGRASGSMLEPIQVEAYGQMTPINQIGTVNVPEPR 66 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ ++VWDK MV VE+ I ES LG+NP + G ++ +P+PE EERR L KVA YAE Sbjct: 67 MVTINVWDKSMVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRRELTKVAGQYAEH 126 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++++RN+RRDGMD +KK++ G SED E ++Q++TD IK +D+ E K+ EIM Sbjct: 127 ARVAIRNVRRDGMDQIKKAKADG-ISEDDQKFWEAEVQELTDKMIKVVDAALETKQAEIM 185 Query: 185 HF 186 Sbjct: 186 QV 187 >gi|159028125|emb|CAO89732.1| frr [Microcystis aeruginosa PCC 7806] Length = 182 Score = 236 bits (604), Expect = 9e-61, Method: Composition-based stats. Identities = 65/180 (36%), Positives = 107/180 (59%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++D M T+ ++ T+RTGR + S+LD + VE YG PL +A ++ + + Sbjct: 3 LAEVQDHMQKTVESTQRAFNTIRTGRANASLLDRIVVEYYGMETPLKSLATISTPDATTI 62 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + +D+ + ++E+ I S++GL P +GQ +R+ +P T +RR LVK+A AE+ K Sbjct: 63 AIQPFDRTSMGAIEKAISLSDVGLTPSNDGQTIRLNIPPLTSDRRKELVKLAAKLAEEGK 122 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD +D ++K KS + SED L++ +QK TD I I+ K+K+IM Sbjct: 123 VAVRNIRRDAIDAIRKQEKSHEISEDESRDLQDQVQKSTDKFIAKIEDLLTTKEKDIMTV 182 >gi|296117647|ref|ZP_06836231.1| ribosome recycling factor [Corynebacterium ammoniagenes DSM 20306] gi|295969378|gb|EFG82619.1| ribosome recycling factor [Corynebacterium ammoniagenes DSM 20306] Length = 185 Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats. Identities = 73/178 (41%), Positives = 119/178 (66%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 ++RM +++ +++++T+RTGR +PSM + V E YG P+ Q+++++V EPRML++ Sbjct: 8 ESEERMANSVEHTREELVTIRTGRANPSMFNGVVAEYYGVPTPITQMSSISVPEPRMLLI 67 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 +++ M+ +E I S+LG+NP +GQVLR+ +P+ TEERR LVKVA + E KI+ Sbjct: 68 KPYEQSMMGEIENAIRNSDLGVNPTNDGQVLRVTIPQLTEERRRDLVKVAKSKGEDGKIA 127 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +RNIRR M+ LKK +K G A ED +A+ E +++KIT I+ +D K+ E+M Sbjct: 128 IRNIRRKAMEQLKKLQKDGDAGEDEIAAAEKEMEKITHGYIEQVDKLVANKEAELMEV 185 >gi|116872745|ref|YP_849526.1| ribosome recycling factor [Listeria welshimeri serovar 6b str. SLCC5334] gi|123458442|sp|A0AIB5|RRF_LISW6 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|116741623|emb|CAK20747.1| ribosome recycling factor [Listeria welshimeri serovar 6b str. SLCC5334] Length = 185 Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats. Identities = 75/180 (41%), Positives = 121/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K++M L + + T+R GR + S+LD + V+ YG+ P+NQ+A+++V E RML Sbjct: 6 LTKSKEKMDKAEQALTRQLGTIRAGRANASLLDRLSVDYYGAPTPVNQMASISVPEARML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK ++ +E+ I +S+LGL P +G VLR+ +P+ TEERR LVK AE++K Sbjct: 66 LITPYDKTVLGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRR+ + LKK K+G +ED + S D+QK+TD +IKNID+ ++K+ EI+ Sbjct: 126 VAVRNIRREANEELKKLEKNGDITEDDLRSYGEDVQKLTDESIKNIDNITKDKEAEILEV 185 >gi|313673948|ref|YP_004052059.1| ribosome recycling factor [Calditerrivibrio nitroreducens DSM 19672] gi|312940704|gb|ADR19896.1| ribosome recycling factor [Calditerrivibrio nitroreducens DSM 19672] Length = 184 Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats. Identities = 76/180 (42%), Positives = 114/180 (63%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 K++M T+ K ++ ++RTGR S S+ D +KV+ YG+ PL+QVA + EPRM+ Sbjct: 6 FNKTKEKMEKTLEHYKTELKSVRTGRASVSLFDNIKVDYYGTPTPLSQVAALNA-EPRMI 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ W+ M+ +E+ I SNLGL P +G+V+R+P+P TEERR +VK+ +E++K Sbjct: 65 IIQPWEPSMIKPIEKAILTSNLGLTPSNDGRVIRVPIPPLTEERRKEIVKLVKKMSEEAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RN RRD ++ LKK K + SED IQK+TD IK ID E+K+KEIM Sbjct: 125 IAIRNERRDAIEKLKKMEKDKEISEDDNKKGAEQIQKLTDEYIKKIDEVTEKKEKEIMEI 184 >gi|27467853|ref|NP_764490.1| ribosome recycling factor [Staphylococcus epidermidis ATCC 12228] gi|57866733|ref|YP_188408.1| ribosome recycling factor [Staphylococcus epidermidis RP62A] gi|293366777|ref|ZP_06613453.1| ribosome recycling factor [Staphylococcus epidermidis M23864:W2(grey)] gi|33301559|sp|Q8CSU0|RRF_STAES RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|62900782|sp|Q5HPT2|RRF_STAEQ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|27315398|gb|AAO04532.1|AE016747_29 ribosome recycling factor [Staphylococcus epidermidis ATCC 12228] gi|57637391|gb|AAW54179.1| ribosome recycling factor [Staphylococcus epidermidis RP62A] gi|291319078|gb|EFE59448.1| ribosome recycling factor [Staphylococcus epidermidis M23864:W2(grey)] gi|329736280|gb|EGG72552.1| ribosome recycling factor [Staphylococcus epidermidis VCU028] gi|329736543|gb|EGG72809.1| ribosome recycling factor [Staphylococcus epidermidis VCU045] Length = 184 Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats. Identities = 79/186 (42%), Positives = 121/186 (65%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ +I ++ K RM +I L +++ + GR + ++L+ V V+ YG+ P+ Q+A++ V Sbjct: 1 MSDII--KDTKSRMQKSIDNLSRELANISAGRANSNLLNGVTVDYYGAPTPVQQLASINV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R+LV+S +DK VA +E+ I +NLG+NP +G+V+RI VP TEERR LVK Sbjct: 59 PEARLLVISPYDKSSVADIEKAIIAANLGVNPTSDGEVIRISVPALTEERRKELVKEVKK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E +K+S+RNIRRD D LKK K+G +ED + S +D+QK TD++IK ID +K+ Sbjct: 119 IGEDAKVSIRNIRRDINDQLKKDEKNGDITEDDLRSQTDDVQKATDNSIKEIDQLVADKE 178 Query: 181 KEIMHF 186 K+IM Sbjct: 179 KDIMSV 184 >gi|152987346|ref|YP_001346870.1| ribosome recycling factor [Pseudomonas aeruginosa PA7] gi|166230818|sp|A6V1D5|RRF_PSEA7 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|150962504|gb|ABR84529.1| ribosome recycling factor [Pseudomonas aeruginosa PA7] Length = 185 Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats. Identities = 78/179 (43%), Positives = 110/179 (61%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++RMG T+ L +RTGR PS+LD V V YG+ PL QVANVTV + R L Sbjct: 7 KEAQERMGKTLEALGHAFAKIRTGRAHPSILDSVMVSYYGADTPLRQVANVTVEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DK M+ +VE+ I S+LGLNP G +R+P+P TEE R K A A AE++++ Sbjct: 67 LAVFDKSMIQAVEKAIMTSDLGLNPATAGTTIRVPMPALTEETRKGYTKQARAEAEQARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRNIRRD + LK +K + SED +D+QK+TD I I+ E K+ ++M Sbjct: 127 SVRNIRRDALAQLKDLQKEKEISEDDERRAGDDVQKLTDKFIGEIEKALEAKEADLMAV 185 >gi|240171728|ref|ZP_04750387.1| ribosome recycling factor [Mycobacterium kansasii ATCC 12478] Length = 185 Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats. Identities = 64/180 (35%), Positives = 111/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++M +S + D+ T+RTGR +P M + ++ YG++ P+ Q+A++ V E R++ Sbjct: 6 LFDAEEKMEKAVSVARDDLSTIRTGRANPGMFSRIVIDYYGTNTPITQLASINVPEARLV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ ++ + ++E I S+LG+NP +G ++R+ +P+ TEERR LVK A E+++ Sbjct: 66 VIKPYEANQLHAIETAIRNSDLGVNPTNDGTLIRVAIPQLTEERRRELVKQAKHKGEEAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +SVRNIRR M+ L + RK G+A ED V E D+ K T + ID + K+ E++ Sbjct: 126 VSVRNIRRKAMEELHRIRKDGEAGEDEVGRAEKDLDKTTHHYVAQIDELVKHKEGELLEV 185 >gi|149928181|ref|ZP_01916426.1| ribosome recycling factor [Limnobacter sp. MED105] gi|149823072|gb|EDM82312.1| ribosome recycling factor [Limnobacter sp. MED105] Length = 186 Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats. Identities = 72/179 (40%), Positives = 112/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + +++M +I LK D+ +RTGR +LD V+V+ YGS VP++QVAN+++ + R +V Sbjct: 8 KTTEEKMVKSIESLKTDLQKVRTGRAHTGILDHVQVDYYGSMVPISQVANLSLADARTIV 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K M +VE+ I ES+LGLNP G+ +R+P+P TEERR L K E++K+ Sbjct: 68 VQPWEKNMANAVEKAIRESDLGLNPASMGETIRVPMPALTEERRKELTKFIKGEGEQTKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD + LK+ + SED + DIQK+TD + +D + K+ EIM Sbjct: 128 AIRNLRRDANEALKRLVNDKEISEDDERRAQADIQKLTDKFVSEVDQVLQSKEAEIMTV 186 >gi|254421634|ref|ZP_05035352.1| ribosome recycling factor [Synechococcus sp. PCC 7335] gi|196189123|gb|EDX84087.1| ribosome recycling factor [Synechococcus sp. PCC 7335] Length = 185 Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats. Identities = 67/178 (37%), Positives = 105/178 (58%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 DL ++ M + K+ T+RTGR S S+LD + V+ YGS L +AN+T + Sbjct: 5 DLGEVESAMQKAVESTKRAFNTIRTGRASASLLDRIMVDYYGSPTSLKSLANITTPDAST 64 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 L++ +D V + + I S++GL P +G ++R+ +P T ERR K+A YAE+ Sbjct: 65 LMIQAFDPSSVQLIAKAISMSDVGLVPNTDGALIRLNIPPLTTERRQEFAKLAGKYAEEG 124 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 ++SVRN+RRDG+D KK K G+ SED +++++QK+TD K ID +K+K I Sbjct: 125 RVSVRNVRRDGIDLAKKQEKDGEISEDESRDMQDEVQKLTDKYTKQIDEALADKEKAI 182 >gi|300311496|ref|YP_003775588.1| ribosome recycling factor [Herbaspirillum seropedicae SmR1] gi|300074281|gb|ADJ63680.1| ribosome recycling factor (ribosome releasing factor) protein [Herbaspirillum seropedicae SmR1] Length = 186 Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats. Identities = 78/179 (43%), Positives = 118/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N + +M +I LK ++ +RTGR +LD V V+ YGS L+QVAN+T+++ R + Sbjct: 8 KNSEQKMAKSIETLKANLAKVRTGRAHTGLLDQVMVDYYGSPTGLSQVANLTLIDARTIG 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V ++K+MVA VE+ I E++LGLNP G+++R+P+P TEERR +VK+ AE +KI Sbjct: 68 VQPYEKKMVAVVEKAIREADLGLNPATHGELIRVPMPPLTEERRKEMVKLVKGEAEDAKI 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRR+G + LKK K ASED +++IQK+TD + ID +K+KE+M Sbjct: 128 AVRNIRREGNESLKKLVKDKVASEDDERRGQDEIQKLTDKFVAEIDKLVSDKEKEVMTV 186 >gi|89068188|ref|ZP_01155598.1| ribosome recycling factor [Oceanicola granulosus HTCC2516] gi|89046105|gb|EAR52163.1| ribosome recycling factor [Oceanicola granulosus HTCC2516] Length = 186 Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats. Identities = 84/185 (45%), Positives = 125/185 (67%), Gaps = 2/185 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 + ++D +++ RM T++ L+ + +LRTGR S SML+ V+VEAYG P+NQV V V Sbjct: 4 DFILDTDDLQRRMDGTMNNLRTEFASLRTGRASASMLEPVQVEAYGQMTPINQVGTVNVP 63 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 EPRM+ ++VWDK +V VE+ I ES LG+NP + G ++ +P+PE EERR L KVA Y Sbjct: 64 EPRMVTINVWDKGLVNKVEKAIRESGLGINPQMNGTIIMLPIPELNEERRRELTKVAGQY 123 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 AE +++S+RN+RRDGMD +KK+ + +ED E ++Q++TD IK++D E K+ Sbjct: 124 AEHARVSIRNVRRDGMDQIKKA--ADGMAEDDRKLWEAEVQEMTDKYIKSVDDALEHKQA 181 Query: 182 EIMHF 186 EIM Sbjct: 182 EIMQV 186 >gi|242080283|ref|XP_002444910.1| hypothetical protein SORBIDRAFT_07g001230 [Sorghum bicolor] gi|241941260|gb|EES14405.1| hypothetical protein SORBIDRAFT_07g001230 [Sorghum bicolor] Length = 265 Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats. Identities = 66/179 (36%), Positives = 108/179 (60%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 K++M I ++ + T+RTGR +P+MLD ++VE YG+ V L +A ++ + L+ Sbjct: 87 DQAKEKMEKAIETVQTNFNTVRTGRANPAMLDRIEVEYYGTPVNLKSIAQISTPDATSLL 146 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +DK + +E+ I +NLG+ P +G+V+R+ VP T +RR L K +E K+ Sbjct: 147 IQPYDKSSLKLIEKTIVAANLGVTPSNDGEVIRVTVPPLTSDRRKELAKTVAKLSEDGKV 206 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD + K +K K SED V L D+QK+TD +K IDS ++K++E+M Sbjct: 207 AIRNIRRDAIKAYDKLQKEKKLSEDNVKDLSADLQKVTDEYMKKIDSIQKQKEQELMKI 265 >gi|297202666|ref|ZP_06920063.1| ribosome recycling factor [Streptomyces sviceus ATCC 29083] gi|197713241|gb|EDY57275.1| ribosome recycling factor [Streptomyces sviceus ATCC 29083] Length = 185 Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats. Identities = 64/180 (35%), Positives = 106/180 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K+D +RTGR P+M + + + YG+ P+NQ+A+ +V EPRM Sbjct: 6 LLEAEEKMEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGAPTPINQLASFSVPEPRMA 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV+ +DK + ++E+ I +S+LG+NP +G ++R+ PE TEERR +KVA AE SK Sbjct: 66 VVTPFDKTALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEERRRDYIKVARGKAEDSK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+R++RR D + K K G+ ED E D+ T + +D + K+ E++ Sbjct: 126 VSIRSVRRKAKDAIDKLVKDGEVGEDEGRRAEKDLDDATHKYVAQVDELLKHKEAELLEV 185 >gi|110834007|ref|YP_692866.1| ribosome recycling factor [Alcanivorax borkumensis SK2] gi|123050546|sp|Q0VQF4|RRF_ALCBS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|110647118|emb|CAL16594.1| Ribosome recycling factor [Alcanivorax borkumensis SK2] Length = 185 Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats. Identities = 73/179 (40%), Positives = 111/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + + RM ++ L M +RTGR PS+LD + +E YG+ PLNQ+ N++V E R L Sbjct: 7 SDAQSRMKKSLEALDTAMKRVRTGRAHPSLLDNITIEYYGAETPLNQMGNISVEEGRTLT 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S +DK ++ +ER I S+LGLNP G ++R+P+P TEE R LVKV A AE++++ Sbjct: 67 ISPFDKSLIPQIERAILMSDLGLNPSTSGTLIRLPLPPLTEETRRDLVKVVRAEAEQARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RNIRRD LK+ K + SED E IQ++TD + ++ +EK++E+M Sbjct: 127 SIRNIRRDANSDLKELLKEKEISEDEQRRGEEQIQQLTDKMVAEVEGVLKEKEEELMTV 185 >gi|167630327|ref|YP_001680826.1| ribosome recycling factor [Heliobacterium modesticaldum Ice1] gi|238687988|sp|B0THE0|RRF_HELMI RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|167593067|gb|ABZ84815.1| ribosome recycling factor [Heliobacterium modesticaldum Ice1] Length = 185 Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats. Identities = 69/179 (38%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + +D+M T+ L+K+ +R GR +P++L+ V VE YG+ P+NQ+AN++ E R+LV Sbjct: 7 KETEDKMKKTVEALRKEYQHIRAGRANPALLEKVTVEYYGAPTPVNQLANISAPEARLLV 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + WDK ++ ++E+ I +S+LGL P +G V+R+ +P+ T+ERR LVK AE+ ++ Sbjct: 67 IQPWDKSVLPALEKAILKSDLGLTPTSDGAVIRLVIPQLTQERRSELVKTVKKRAEEHRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +RN+RRD + +K +K SED + +IQK+TD I+ +D E K+ EIM Sbjct: 127 ILRNLRRDANEDVKDLQKEHIISEDEGKRAQEEIQKLTDKYIREVDQVAERKEAEIMEV 185 >gi|332298055|ref|YP_004439977.1| Ribosome-recycling factor [Treponema brennaborense DSM 12168] gi|332181158|gb|AEE16846.1| Ribosome-recycling factor [Treponema brennaborense DSM 12168] Length = 183 Score = 236 bits (602), Expect = 1e-60, Method: Composition-based stats. Identities = 83/173 (47%), Positives = 119/173 (68%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 RM TI+ LK D TLRTGR S ++ D V+V+ YG+ PLNQV+ ++V E R +V+ +D Sbjct: 10 RMEKTIAALKDDFKTLRTGRASAAIFDKVRVDYYGTPTPLNQVSTISVPEARSIVIQPFD 69 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K ++ +E+ I +S LGLNP +G+V+RI +P T +RR LVK A A AE S++++RNI Sbjct: 70 KSLIGEIEKAIQKSELGLNPSNDGKVIRIAIPPLTADRRKELVKQAKATAENSRVAIRNI 129 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 RRDG D LKK +K G +ED + + E ++QK TD I++I+ EEK+KEIM Sbjct: 130 RRDGNDDLKKQQKDGSLTEDGLKTAETELQKSTDKFIQDINKILEEKEKEIME 182 >gi|218459807|ref|ZP_03499898.1| ribosome recycling factor [Rhizobium etli Kim 5] Length = 177 Score = 236 bits (602), Expect = 1e-60, Method: Composition-based stats. Identities = 106/176 (60%), Positives = 133/176 (75%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M++ ID++ +K RM +S K D+ +LRTGR S ++LD V +EAYGS VPLNQVAN+TV Sbjct: 1 MSEGIDIKELKRRMDGAVSAFKSDIASLRTGRASANILDPVTIEAYGSRVPLNQVANITV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPRML VSVWDK MV++VERGI ESNLGLNPIV+GQ LRIP+PE EERR +LVKVAH Sbjct: 61 PEPRMLTVSVWDKSMVSAVERGIRESNLGLNPIVDGQSLRIPLPELNEERRKSLVKVAHD 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFF 176 YAEKSK+++R++RRDGMD LKK+ K G +D + +QK+TD TI ID Sbjct: 121 YAEKSKVAIRHVRRDGMDGLKKAEKDGVIGQDESRAQSERVQKMTDETISEIDRLL 176 >gi|15598849|ref|NP_252343.1| ribosome recycling factor [Pseudomonas aeruginosa PAO1] gi|107103167|ref|ZP_01367085.1| hypothetical protein PaerPA_01004236 [Pseudomonas aeruginosa PACS2] gi|116051650|ref|YP_789511.1| ribosome recycling factor [Pseudomonas aeruginosa UCBPP-PA14] gi|218890122|ref|YP_002438986.1| ribosome recycling factor [Pseudomonas aeruginosa LESB58] gi|254236567|ref|ZP_04929890.1| ribosome recycling factor [Pseudomonas aeruginosa C3719] gi|254242350|ref|ZP_04935672.1| ribosome recycling factor [Pseudomonas aeruginosa 2192] gi|313109058|ref|ZP_07795030.1| ribosome recycling factor [Pseudomonas aeruginosa 39016] gi|6226046|sp|O82853|RRF_PSEAE RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|122260793|sp|Q02RC5|RRF_PSEAB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226703267|sp|B7V7G0|RRF_PSEA8 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|9949814|gb|AAG07041.1|AE004785_5 ribosome recycling factor [Pseudomonas aeruginosa PAO1] gi|3417449|dbj|BAA32345.1| ribosome recycling factor [Pseudomonas aeruginosa] gi|115586871|gb|ABJ12886.1| ribosome recycling factor [Pseudomonas aeruginosa UCBPP-PA14] gi|126168498|gb|EAZ54009.1| ribosome recycling factor [Pseudomonas aeruginosa C3719] gi|126195728|gb|EAZ59791.1| ribosome recycling factor [Pseudomonas aeruginosa 2192] gi|218770345|emb|CAW26110.1| ribosome recycling factor [Pseudomonas aeruginosa LESB58] gi|310881532|gb|EFQ40126.1| ribosome recycling factor [Pseudomonas aeruginosa 39016] Length = 185 Score = 236 bits (602), Expect = 1e-60, Method: Composition-based stats. Identities = 78/179 (43%), Positives = 110/179 (61%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++RMG T+ L +RTGR PS+LD V V YG+ PL QVANVTV + R L Sbjct: 7 KEAQERMGKTLEALGHAFAKIRTGRAHPSILDSVMVSYYGADTPLRQVANVTVEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DK M+ +VE+ I S+LGLNP G +R+P+P TEE R K A A AE++++ Sbjct: 67 LAVFDKSMIQAVEKAIMTSDLGLNPATAGTTIRVPMPALTEETRKGYTKQARAEAEQARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRNIRRD + LK +K + SED +D+QK+TD I I+ E K+ ++M Sbjct: 127 SVRNIRRDALAQLKDLQKEKEISEDEERRAGDDVQKLTDKFIGEIEKALEAKEADLMAV 185 >gi|258545341|ref|ZP_05705575.1| ribosome recycling factor [Cardiobacterium hominis ATCC 15826] gi|258519444|gb|EEV88303.1| ribosome recycling factor [Cardiobacterium hominis ATCC 15826] Length = 185 Score = 236 bits (602), Expect = 1e-60, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ RM ++ L+ ++ +RTGR + S+LD V+VE YGS VPL+Q ANVTV + R L Sbjct: 7 KDAAARMEKSVKSLEHELSKIRTGRANVSLLDHVQVEYYGSMVPLSQAANVTVTDYRSLT 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + VW++ MVA +E+ + S+LGL P GQ + I +P TEERR LVK+ E++K+ Sbjct: 67 IQVWERNMVAVIEKALINSDLGLTPNTAGQNIHINLPPLTEERRKDLVKIVRNEGEQAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD +K+ +ASED E +IQK+TD ++ +D EK+KE+M Sbjct: 127 AIRNVRRDANQSVKQLVTDKQASEDDERRAEAEIQKLTDKYVEQVDKVLAEKEKELMEV 185 >gi|291166148|gb|EFE28194.1| ribosome recycling factor [Filifactor alocis ATCC 35896] Length = 185 Score = 236 bits (602), Expect = 1e-60, Method: Composition-based stats. Identities = 74/178 (41%), Positives = 112/178 (62%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 ++D+M TIS LK+++ +R GR +P+MLD + V+ YGS PL Q+A ++ +PR +V+ Sbjct: 8 ELEDKMTKTISVLKEELSVIRAGRANPAMLDKISVDYYGSQTPLKQMAGISSPDPRTIVI 67 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 WDK + +E+ I S+LG NP +G+V+RI +P+ TEERR LVK+ E+SK++ Sbjct: 68 QPWDKTALKEIEKAILASDLGFNPSNDGEVIRINIPQLTEERRKELVKLVSKTGEQSKVA 127 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +RN RRD D +KK K G+ ED +++Q I D K IDS +K+ EIM Sbjct: 128 LRNARRDTNDKIKKIEKDGELGEDDAKKALDEVQHIIDKYTKEIDSVVAKKEAEIMEI 185 >gi|255020970|ref|ZP_05293025.1| Ribosome recycling factor [Acidithiobacillus caldus ATCC 51756] gi|254969575|gb|EET27082.1| Ribosome recycling factor [Acidithiobacillus caldus ATCC 51756] Length = 186 Score = 236 bits (602), Expect = 1e-60, Method: Composition-based stats. Identities = 65/179 (36%), Positives = 110/179 (61%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM +I LK ++ LRTGR S +LD V+V+ YGS PL+QVA+++V + R L+ Sbjct: 8 KDAEQRMKKSIEALKSELTRLRTGRASAGLLDHVEVDYYGSPTPLSQVASISVADARSLL 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+ W+K ++ +++ I ++ LGLNP+ +R+P+P +EERR +VK+ E +++ Sbjct: 68 VTPWEKPLIPKIDKAIRDAGLGLNPVAGSDNVRVPLPALSEERRKEMVKIVRQEGEGARV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD + +K K SED E + QK+TD + +D E K+ ++M Sbjct: 128 AIRNIRRDAIAQVKDLLKQKSISEDEGRRAEEEFQKLTDRFVDEVDGVVEAKESDLMEV 186 >gi|291286434|ref|YP_003503250.1| ribosome recycling factor [Denitrovibrio acetiphilus DSM 12809] gi|290883594|gb|ADD67294.1| ribosome recycling factor [Denitrovibrio acetiphilus DSM 12809] Length = 185 Score = 236 bits (602), Expect = 1e-60, Method: Composition-based stats. Identities = 71/170 (41%), Positives = 109/170 (64%) Query: 17 TISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMV 76 TIS K ++ T+RTGR S +M D V V+ YG+ PL+ VA++ EPR++ + WD ++ Sbjct: 16 TISHFKDELKTIRTGRASVAMFDGVTVDYYGTPTPLSGVASLNAPEPRLITIQPWDMSII 75 Query: 77 ASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDG 136 ++E+ I SN+G NP +G+++RIPVP+ TEERR +VK+ AE +K+++RN+RR+G Sbjct: 76 GAIEKAIQNSNMGFNPSNDGKIIRIPVPQLTEERRKEIVKLVKKMAEDNKVAIRNLRREG 135 Query: 137 MDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 D +KK K + SED DIQ +T+ IK +D K+KE+M Sbjct: 136 NDKIKKLEKDKEISEDDSKKFVADIQDVTNDFIKKVDEVTAAKEKEVMEI 185 >gi|269926622|ref|YP_003323245.1| ribosome recycling factor [Thermobaculum terrenum ATCC BAA-798] gi|269790282|gb|ACZ42423.1| ribosome recycling factor [Thermobaculum terrenum ATCC BAA-798] Length = 185 Score = 236 bits (602), Expect = 1e-60, Method: Composition-based stats. Identities = 71/180 (39%), Positives = 117/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + + RM +I LKKD+ +R+GR +P +++ ++VE YG PL Q+A+++V EPRM+ Sbjct: 6 LADAEKRMRHSIDVLKKDLANIRSGRATPGLVEHIEVEYYGVPTPLIQLASISVPEPRMI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WD + +E+ I +S LGLNP +G+++RI VP TEERR +LVK+ E+ + Sbjct: 66 AITPWDPNSIGPIEKAIQKSELGLNPSNDGKIIRILVPPLTEERRRSLVKMVRQRVEEDR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD M+ +K+ + SED + +Q++TD IK DS E+K++EI+ Sbjct: 126 VAIRNIRRDVMNDIKQMQHEKMISEDEARRAQEKLQQLTDKYIKEADSLGEQKEQEILTV 185 >gi|269118716|ref|YP_003306893.1| ribosome recycling factor [Sebaldella termitidis ATCC 33386] gi|268612594|gb|ACZ06962.1| ribosome recycling factor [Sebaldella termitidis ATCC 33386] Length = 185 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 68/177 (38%), Positives = 115/177 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ + +M + K ++R GR + SMLD + V+AYG+ PL+Q+ ++ E R+L Sbjct: 6 LKETETKMEKAVESTKDKFASIRAGRANVSMLDGITVDAYGAPSPLSQIGTLSAPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK ++ ++E+ I ++NLGLNP +G+++R+ VPE TEERR VK+ AE+ K Sbjct: 66 TIDPWDKSLIPAIEKAIQQANLGLNPSNDGRIIRLSVPELTEERRKEYVKMVRKEAEEGK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +++RNIR+D + L+KS K + +ED + S E+ +QK+TD K +D ++K+KE+ Sbjct: 126 VAIRNIRKDVNNKLRKSEKDSEITEDDLKSGEDSVQKLTDKFTKLVDEALDKKEKEL 182 >gi|331005977|ref|ZP_08329322.1| Ribosome recycling factor [gamma proteobacterium IMCC1989] gi|330420222|gb|EGG94543.1| Ribosome recycling factor [gamma proteobacterium IMCC1989] Length = 185 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q K +M ++ L + +RTGR PS+LD +KV+ YGS PL+QVAN++VL+ R L Sbjct: 7 QEAKVQMQKSLEALGINFNKIRTGRAHPSILDGIKVDYYGSDTPLSQVANISVLDARTLS 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S W+K++ +E+ I +S+LGLNP G ++R+P+P TEE R K A + AE +KI Sbjct: 67 ISPWEKQLTPQIEKAIMKSDLGLNPSTTGDLIRLPMPMLTEETRKNYTKQAKSEAESAKI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRN RRD + HLK K + ED +++IQKITD + +IDS +K+ +++ Sbjct: 127 SVRNARRDALGHLKDLLKDKEIGEDDERRGQDEIQKITDKFVADIDSALADKETDLLKI 185 >gi|171463274|ref|YP_001797387.1| ribosome recycling factor [Polynucleobacter necessarius subsp. necessarius STIR1] gi|238689053|sp|B1XTU6|RRF_POLNS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|171192812|gb|ACB43773.1| ribosome recycling factor [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 186 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 74/178 (41%), Positives = 118/178 (66%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 N +M ++ LK +++ +R+GR +P +L+ + V+ YG+ PL+QVA++ + + R + V Sbjct: 9 NANQKMEKSLEALKTNLVKVRSGRANPGILEHIHVDYYGNPTPLSQVASLGLADARTINV 68 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 ++K MVA++E+ I +S+LGLNP+ +G V+R+P+P TEERR L KV + E +KI+ Sbjct: 69 QPFEKTMVAAIEKAIRDSDLGLNPVSQGTVIRVPMPALTEERRRELTKVVKSEGEDAKIA 128 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 VRN+RRD +HLK+ K + SED +DIQK+TD + +ID EK+KEIM Sbjct: 129 VRNLRRDANEHLKRLTKDKEISEDDERRATDDIQKMTDKAVIDIDKIIAEKEKEIMTV 186 >gi|25028466|ref|NP_738520.1| ribosome recycling factor [Corynebacterium efficiens YS-314] gi|259507526|ref|ZP_05750426.1| ribosome recycling factor [Corynebacterium efficiens YS-314] gi|29336541|sp|Q8FP75|RRF_COREF RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|23493751|dbj|BAC18720.1| putative ribosome recycling factor [Corynebacterium efficiens YS-314] gi|259164911|gb|EEW49465.1| ribosome recycling factor [Corynebacterium efficiens YS-314] Length = 185 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 71/180 (39%), Positives = 118/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + ++RM +T+ ++D++T+RTGR +P+M + V E YG P+ Q+++++V EPRML Sbjct: 6 LFDSEERMSNTVEHTREDLITIRTGRANPAMFNGVLAEYYGVPTPITQMSSISVPEPRML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ ++ + +E I S+LG+NP +GQVLR+ +P+ TEERR +VK+A E K Sbjct: 66 IIKPYEMSSMGVIENAIRNSDLGVNPTNDGQVLRVTIPQLTEERRRDMVKIAKGKGEDGK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RN+RR GM+ LKK +K G+ ED VA+ E ++ KIT ++ +D K+ E+M Sbjct: 126 IAIRNVRRKGMEQLKKLQKDGEFGEDEVAAAEKELDKITAHYVEQVDEIVARKEAELMEV 185 >gi|121594920|ref|YP_986816.1| ribosome recycling factor [Acidovorax sp. JS42] gi|222110429|ref|YP_002552693.1| ribosome recycling factor [Acidovorax ebreus TPSY] gi|166230405|sp|A1W915|RRF_ACISJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|254809509|sp|B9MGM0|RRF_DIAST RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|120607000|gb|ABM42740.1| ribosome recycling factor [Acidovorax sp. JS42] gi|221729873|gb|ACM32693.1| ribosome recycling factor [Acidovorax ebreus TPSY] Length = 186 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 77/184 (41%), Positives = 117/184 (63%), Gaps = 1/184 (0%) Query: 4 VIDLQNIKD-RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLE 62 + D++ + +M +I+ K ++ +RTGR +P +LD + VE YGS VPL+QVANV +L+ Sbjct: 3 IADIKKTTEAKMDQSIAAFKNNLAKIRTGRANPQLLDTIHVEYYGSMVPLSQVANVALLD 62 Query: 63 PRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 R + V W+K M A +E+ I ES+LGLNP G ++R+P+P +EERR + K+A + Sbjct: 63 ARTISVQPWEKNMGAKIEKAIRESDLGLNPASMGDLIRVPMPPMSEERRKEMTKLARSEG 122 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 E +K+++RN+RRD + +KK K ASED E D+QK TD I ID+ K++E Sbjct: 123 EGAKVAIRNLRRDANEGVKKLVKDKLASEDDQKRAEADVQKTTDKHIAEIDALVAAKEQE 182 Query: 183 IMHF 186 IM Sbjct: 183 IMAI 186 >gi|50842996|ref|YP_056223.1| ribosome recycling factor [Propionibacterium acnes KPA171202] gi|289426460|ref|ZP_06428203.1| ribosome recycling factor [Propionibacterium acnes SK187] gi|289428643|ref|ZP_06430326.1| ribosome recycling factor [Propionibacterium acnes J165] gi|295131067|ref|YP_003581730.1| ribosome recycling factor [Propionibacterium acnes SK137] gi|60390690|sp|Q6A7K0|RRF_PROAC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|50840598|gb|AAT83265.1| ribosome recycling factor [Propionibacterium acnes KPA171202] gi|289153188|gb|EFD01906.1| ribosome recycling factor [Propionibacterium acnes SK187] gi|289158041|gb|EFD06261.1| ribosome recycling factor [Propionibacterium acnes J165] gi|291377325|gb|ADE01180.1| ribosome recycling factor [Propionibacterium acnes SK137] gi|313763566|gb|EFS34930.1| ribosome recycling factor [Propionibacterium acnes HL013PA1] gi|313773505|gb|EFS39471.1| ribosome recycling factor [Propionibacterium acnes HL074PA1] gi|313793959|gb|EFS41983.1| ribosome recycling factor [Propionibacterium acnes HL110PA1] gi|313801346|gb|EFS42597.1| ribosome recycling factor [Propionibacterium acnes HL110PA2] gi|313807974|gb|EFS46455.1| ribosome recycling factor [Propionibacterium acnes HL087PA2] gi|313811557|gb|EFS49271.1| ribosome recycling factor [Propionibacterium acnes HL083PA1] gi|313816746|gb|EFS54460.1| ribosome recycling factor [Propionibacterium acnes HL059PA1] gi|313819543|gb|EFS57257.1| ribosome recycling factor [Propionibacterium acnes HL046PA2] gi|313822134|gb|EFS59848.1| ribosome recycling factor [Propionibacterium acnes HL036PA1] gi|313823632|gb|EFS61346.1| ribosome recycling factor [Propionibacterium acnes HL036PA2] gi|313825956|gb|EFS63670.1| ribosome recycling factor [Propionibacterium acnes HL063PA1] gi|313829423|gb|EFS67137.1| ribosome recycling factor [Propionibacterium acnes HL063PA2] gi|313831297|gb|EFS69011.1| ribosome recycling factor [Propionibacterium acnes HL007PA1] gi|313834908|gb|EFS72622.1| ribosome recycling factor [Propionibacterium acnes HL056PA1] gi|313839933|gb|EFS77647.1| ribosome recycling factor [Propionibacterium acnes HL086PA1] gi|314914720|gb|EFS78551.1| ribosome recycling factor [Propionibacterium acnes HL005PA4] gi|314919318|gb|EFS83149.1| ribosome recycling factor [Propionibacterium acnes HL050PA1] gi|314920772|gb|EFS84603.1| ribosome recycling factor [Propionibacterium acnes HL050PA3] gi|314924719|gb|EFS88550.1| ribosome recycling factor [Propionibacterium acnes HL036PA3] gi|314930451|gb|EFS94282.1| ribosome recycling factor [Propionibacterium acnes HL067PA1] gi|314954392|gb|EFS98798.1| ribosome recycling factor [Propionibacterium acnes HL027PA1] gi|314957475|gb|EFT01578.1| ribosome recycling factor [Propionibacterium acnes HL002PA1] gi|314962110|gb|EFT06211.1| ribosome recycling factor [Propionibacterium acnes HL002PA2] gi|314963689|gb|EFT07789.1| ribosome recycling factor [Propionibacterium acnes HL082PA1] gi|314968483|gb|EFT12581.1| ribosome recycling factor [Propionibacterium acnes HL037PA1] gi|314974173|gb|EFT18269.1| ribosome recycling factor [Propionibacterium acnes HL053PA1] gi|314976537|gb|EFT20632.1| ribosome recycling factor [Propionibacterium acnes HL045PA1] gi|314978900|gb|EFT22994.1| ribosome recycling factor [Propionibacterium acnes HL072PA2] gi|314984356|gb|EFT28448.1| ribosome recycling factor [Propionibacterium acnes HL005PA1] gi|314986546|gb|EFT30638.1| ribosome recycling factor [Propionibacterium acnes HL005PA2] gi|314990905|gb|EFT34996.1| ribosome recycling factor [Propionibacterium acnes HL005PA3] gi|315079539|gb|EFT51532.1| ribosome recycling factor [Propionibacterium acnes HL053PA2] gi|315081233|gb|EFT53209.1| ribosome recycling factor [Propionibacterium acnes HL078PA1] gi|315083599|gb|EFT55575.1| ribosome recycling factor [Propionibacterium acnes HL027PA2] gi|315087116|gb|EFT59092.1| ribosome recycling factor [Propionibacterium acnes HL002PA3] gi|315089289|gb|EFT61265.1| ribosome recycling factor [Propionibacterium acnes HL072PA1] gi|315095312|gb|EFT67288.1| ribosome recycling factor [Propionibacterium acnes HL038PA1] gi|315099193|gb|EFT71169.1| ribosome recycling factor [Propionibacterium acnes HL059PA2] gi|315100324|gb|EFT72300.1| ribosome recycling factor [Propionibacterium acnes HL046PA1] gi|315106750|gb|EFT78726.1| ribosome recycling factor [Propionibacterium acnes HL030PA1] gi|315108992|gb|EFT80968.1| ribosome recycling factor [Propionibacterium acnes HL030PA2] gi|327328425|gb|EGE70187.1| ribosome recycling factor [Propionibacterium acnes HL096PA2] gi|327329709|gb|EGE71465.1| ribosome recycling factor [Propionibacterium acnes HL096PA3] gi|327444212|gb|EGE90866.1| ribosome recycling factor [Propionibacterium acnes HL043PA2] gi|327444909|gb|EGE91563.1| ribosome recycling factor [Propionibacterium acnes HL043PA1] gi|327446394|gb|EGE93048.1| ribosome recycling factor [Propionibacterium acnes HL013PA2] gi|327452018|gb|EGE98672.1| ribosome recycling factor [Propionibacterium acnes HL092PA1] gi|327454945|gb|EGF01600.1| ribosome recycling factor [Propionibacterium acnes HL087PA3] gi|327457769|gb|EGF04424.1| ribosome recycling factor [Propionibacterium acnes HL083PA2] gi|328752149|gb|EGF65765.1| ribosome recycling factor [Propionibacterium acnes HL020PA1] gi|328755222|gb|EGF68838.1| ribosome recycling factor [Propionibacterium acnes HL087PA1] gi|328758299|gb|EGF71915.1| ribosome recycling factor [Propionibacterium acnes HL025PA2] gi|328760030|gb|EGF73611.1| ribosome recycling factor [Propionibacterium acnes HL099PA1] gi|332675946|gb|AEE72762.1| ribosome-recycling factor [Propionibacterium acnes 266] Length = 184 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 65/186 (34%), Positives = 114/186 (61%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ +I ++ + +MG + +++ +RTGR +P+M + + VE YG+ PL Q+A+ V Sbjct: 1 MSDII--KDAEKKMGSAVDHAREEFAAIRTGRANPAMFNKLMVEYYGTPTPLQQLASFQV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R ++++ +DK V VE+ I +S+LG+NP +G V+R +P TEERR +K+A Sbjct: 59 PEARTVLIAPFDKSCVNDVEKAIRDSDLGVNPSNDGNVVRCVLPALTEERRKEYIKMAKT 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE+ +I+VRN+RR D +KK K + SED + LE ++ ++T ++ ID + K+ Sbjct: 119 KAEEGRIAVRNVRRASNDVVKKQEKDKEISEDEMTRLEKELDQVTRKYVEQIDELLKSKE 178 Query: 181 KEIMHF 186 E++ Sbjct: 179 SELLEI 184 >gi|300780937|ref|ZP_07090791.1| ribosome recycling factor [Corynebacterium genitalium ATCC 33030] gi|300532644|gb|EFK53705.1| ribosome recycling factor [Corynebacterium genitalium ATCC 33030] Length = 185 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 72/180 (40%), Positives = 116/180 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + ++RM +++ + +++T+RTGR +P+M + V E YG+ P+NQ+A ++V EPRML Sbjct: 6 LLDAEERMTNSVEHTRGELVTIRTGRANPAMFNSVMAEFYGAPTPINQMATISVPEPRML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D + +E I S+LG+NP +GQV+R+ +P+ TEERR LVK A E K Sbjct: 66 LIKPYDPSTMGEIENAIRNSDLGVNPTDDGQVIRVTIPQLTEERRRDLVKQAKGKGEDGK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RN+RR GMD LKK +K G A ED V++ E ++ K T + ID +K+ E++ Sbjct: 126 IAIRNVRRSGMDALKKIQKDGDAGEDEVSAAEKELDKTTAKYVDMIDDLVNKKEAELLEV 185 >gi|302038069|ref|YP_003798391.1| ribosome recycling factor [Candidatus Nitrospira defluvii] gi|300606133|emb|CBK42466.1| Ribosome recycling factor [Candidatus Nitrospira defluvii] Length = 187 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 71/179 (39%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q + ++M I LK+D+ LRTGR S +++D ++V+ YG+ PL QVANV E R++ Sbjct: 9 QRVTEKMDHAIEHLKRDLAGLRTGRASVALVDGIRVDYYGTMTPLKQVANVATPEARLIT 68 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + W++ ++ +E+ I S+LGL P +G+++RIP+P TEERR L+KV + E+ K+ Sbjct: 69 IQPWEQNLIREIEKAIQTSDLGLTPSNDGKLIRIPLPPLTEERRKELIKVCKKHGEEVKV 128 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +R RRDG + LKK +K K +ED + E +IQK+TD ++ ID ++K+ EI+ Sbjct: 129 QIRGFRRDGNEELKKLQKDTKLTEDELRKSEAEIQKLTDQYVQKIDDVMKKKEGEILEV 187 >gi|120610506|ref|YP_970184.1| ribosome recycling factor [Acidovorax citrulli AAC00-1] gi|166230402|sp|A1TN72|RRF_ACIAC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|120588970|gb|ABM32410.1| ribosome recycling factor [Acidovorax citrulli AAC00-1] Length = 186 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 78/179 (43%), Positives = 116/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N + +M +I K ++ +RTGR +P++LD V+VE YGS VPL+QVANV++++ R + Sbjct: 8 KNTEAKMDQSIVAFKNNLAKIRTGRANPALLDSVQVEYYGSMVPLSQVANVSLIDARTIS 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K M A +E+ I ES LGLNP G ++R+P+P +EERR + K+A E +K+ Sbjct: 68 VQPWEKGMGAKIEKAIRESELGLNPASMGDLIRVPMPPMSEERRKEMTKLARNEGEGAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD + +KK K ASED E DIQK+TD I +D+ K++EIM Sbjct: 128 AVRNLRRDANESVKKLVKDKLASEDEQKRAEADIQKVTDKHIAEVDALVAAKEQEIMAV 186 >gi|167759673|ref|ZP_02431800.1| hypothetical protein CLOSCI_02032 [Clostridium scindens ATCC 35704] gi|167662704|gb|EDS06834.1| hypothetical protein CLOSCI_02032 [Clostridium scindens ATCC 35704] Length = 183 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 80/186 (43%), Positives = 121/186 (65%), Gaps = 3/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 MN+ LQ +D+M T++ L+ D+ T+R GR +P++L+ + V+ YG+ P+ QV NV+V Sbjct: 1 MNER--LQVYEDKMKKTMASLESDLATIRAGRANPNVLNKIMVDYYGTPTPIQQVGNVSV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPRM+++ W+K MV ++E+ I S LG+NP +G +R+ PE TEERR LVK Sbjct: 59 PEPRMILIQPWEKSMVKAIEKAIQTSELGINPTNDGSAIRLVFPELTEERRKELVKDVKK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E +K+++RNIRRDG D LKK K + SED + +E ++QK+TD +K +D E K Sbjct: 119 KGEGAKVAIRNIRRDGNDALKKL-KGSEVSEDEIKDMEEELQKVTDKFVKKVDEAVEAKS 177 Query: 181 KEIMHF 186 KE+M Sbjct: 178 KEVMTV 183 >gi|121998245|ref|YP_001003032.1| ribosome recycling factor [Halorhodospira halophila SL1] gi|166230792|sp|A1WX18|RRF_HALHL RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|121589650|gb|ABM62230.1| ribosome recycling factor [Halorhodospira halophila SL1] Length = 185 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 73/179 (40%), Positives = 111/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ RM + LK D+ LRTGR S+LD V VE YG VP+ Q ANV+V + R L Sbjct: 7 EDADRRMAKAVESLKHDLARLRTGRAHTSLLDQVNVEYYGMEVPIKQAANVSVEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+ ++K MV ++E+ I SNLGL+P+ GQV+R+P+P TE+RR +V++ AE++++ Sbjct: 67 VTPFEKHMVPAIEKAIMASNLGLSPVSAGQVIRVPLPSLTEDRRKEMVRLVKNEAEQARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD LK K +ED + IQK+TD + +D EEK++E+M Sbjct: 127 AIRNVRRDANSDLKDLAKGKDITEDEERRAQEAIQKLTDRYVAQVDDLLEEKERELMEV 185 >gi|282854667|ref|ZP_06264002.1| ribosome recycling factor [Propionibacterium acnes J139] gi|282582249|gb|EFB87631.1| ribosome recycling factor [Propionibacterium acnes J139] gi|314923764|gb|EFS87595.1| ribosome recycling factor [Propionibacterium acnes HL001PA1] gi|314966222|gb|EFT10321.1| ribosome recycling factor [Propionibacterium acnes HL082PA2] gi|314981988|gb|EFT26081.1| ribosome recycling factor [Propionibacterium acnes HL110PA3] gi|315090899|gb|EFT62875.1| ribosome recycling factor [Propionibacterium acnes HL110PA4] gi|315095112|gb|EFT67088.1| ribosome recycling factor [Propionibacterium acnes HL060PA1] gi|315104341|gb|EFT76317.1| ribosome recycling factor [Propionibacterium acnes HL050PA2] gi|327328110|gb|EGE69879.1| ribosome recycling factor [Propionibacterium acnes HL103PA1] Length = 184 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 65/186 (34%), Positives = 113/186 (60%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ +I ++ + +MG + +++ +RTGR +P+M + + VE YG+ PL Q+A+ V Sbjct: 1 MSDII--KDAEKKMGSAVDHAREEFAAIRTGRANPAMFNKLMVEYYGTPTPLQQLASFQV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R ++++ +DK V VE+ I +S+LG+NP +G V+R +P TEERR +K+A Sbjct: 59 PEARTVLIAPFDKSCVNDVEKAIRDSDLGVNPSNDGNVVRCVLPALTEERRKEYIKMAKT 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE+ +I+VRN+RR D +KK K SED + LE ++ ++T ++ ID + K+ Sbjct: 119 KAEEGRIAVRNVRRASNDVVKKQEKDKDISEDEMTRLEKELDQVTRKYVEQIDELLKSKE 178 Query: 181 KEIMHF 186 E++ Sbjct: 179 SELLEI 184 >gi|296136576|ref|YP_003643818.1| ribosome recycling factor [Thiomonas intermedia K12] gi|295796698|gb|ADG31488.1| ribosome recycling factor [Thiomonas intermedia K12] Length = 186 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N +++M +I LK D+ +RTGR +LD V V+ YG+ + +NQVAN+ +++ R + Sbjct: 8 KNTEEKMHKSIESLKLDLAKVRTGRAHTGLLDHVMVDYYGTMMAINQVANMNLVDARTIS 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K+MV +VE+ I ES+LGLNP +G ++R+P+P TEERR LVKV E +K+ Sbjct: 68 VQPWEKKMVQAVEKAIRESDLGLNPQTQGDIIRVPMPALTEERRRDLVKVIKQEGEGAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD LK K+ + SED ++++QKITD I ID +K+ EIM Sbjct: 128 AVRNLRRDANQSLKDLVKAKEISEDDERRAQDEVQKITDRCIAEIDKQLAQKEAEIMAV 186 >gi|294140006|ref|YP_003555984.1| ribosome recycling factor [Shewanella violacea DSS12] gi|293326475|dbj|BAJ01206.1| ribosome recycling factor [Shewanella violacea DSS12] Length = 185 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 85/178 (47%), Positives = 111/178 (62%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 + + RM I K M +RTGR PS+LD +KV YGS PL QV NVT+ + R L V Sbjct: 8 DAQTRMAKCIEATKTQMAKVRTGRAHPSLLDSIKVSYYGSMTPLKQVGNVTIEDSRTLAV 67 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 SV+D M+ +VE+ I S+LGLNP+ G V+RIP+P TEERR L+KV A AE S+IS Sbjct: 68 SVFDATMIQAVEKAIMSSDLGLNPMSAGAVIRIPLPSLTEERRKDLIKVVRAEAENSRIS 127 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 VRN+RRD +K K + +ED V E++IQK TD+ IK ID K+ E+M Sbjct: 128 VRNVRRDANSEIKALEKEKECTEDDVHRTEDEIQKFTDAHIKQIDELLSAKEAELMEV 185 >gi|254462306|ref|ZP_05075722.1| ribosome recycling factor [Rhodobacterales bacterium HTCC2083] gi|206678895|gb|EDZ43382.1| ribosome recycling factor [Rhodobacteraceae bacterium HTCC2083] Length = 187 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 87/185 (47%), Positives = 125/185 (67%), Gaps = 1/185 (0%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 + ++D ++ RM ++ LK + +LRTGR S SML+ V V+AYGS P+NQV V V Sbjct: 4 DFMLDTDDLHRRMDGAMANLKTEFASLRTGRASGSMLEPVMVDAYGSMTPINQVGTVNVP 63 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 EPRM+ ++VWDK +V VE+ I ES LG+NP + G ++ +P+PE EERR L KVA Y Sbjct: 64 EPRMVTINVWDKGLVQKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRRELTKVAAQY 123 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 E +++SVRN+RRDGMD +KK++ G SED E ++Q++TD+ IK +D+ E K+K Sbjct: 124 TESARVSVRNVRRDGMDQIKKAKNDG-LSEDDQKFWEAEVQELTDAAIKAVDAALEVKQK 182 Query: 182 EIMHF 186 EIM Sbjct: 183 EIMQV 187 >gi|152999980|ref|YP_001365661.1| ribosome recycling factor [Shewanella baltica OS185] gi|160874601|ref|YP_001553917.1| ribosome recycling factor [Shewanella baltica OS195] gi|166231225|sp|A6WLA9|RRF_SHEB8 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|189044074|sp|A9KUK8|RRF_SHEB9 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|151364598|gb|ABS07598.1| ribosome recycling factor [Shewanella baltica OS185] gi|160860123|gb|ABX48657.1| ribosome recycling factor [Shewanella baltica OS195] gi|315266842|gb|ADT93695.1| ribosome recycling factor [Shewanella baltica OS678] Length = 185 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 77/179 (43%), Positives = 112/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RMG + K M +RTGR PS+LD ++V YG+ PLNQVANV V + R L Sbjct: 7 KDAQERMGKCVDATKNQMAKVRTGRAHPSLLDSIQVSYYGTMTPLNQVANVGVEDSRTLS 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+V+D+ + +VE+ I S+LGLNP+ G LRIP+P TEERR +KV AE +I Sbjct: 67 VTVFDRSAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVVRNEAENGRI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD + +KK K+ +ED V E ++QK TD+ IK +D K+ E+M Sbjct: 127 AIRNVRRDAISEVKKLEKAKACTEDDVRRSEEEVQKFTDAHIKKVDEILAAKEIELMEV 185 >gi|254427174|ref|ZP_05040881.1| ribosome recycling factor [Alcanivorax sp. DG881] gi|196193343|gb|EDX88302.1| ribosome recycling factor [Alcanivorax sp. DG881] Length = 185 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 112/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + + RM ++ L M +RTGR PS+LD + +E YG+ PLNQ+ N++V E R L Sbjct: 7 NDAQSRMKKSLEALDTAMKRVRTGRAHPSLLDNITIEYYGAETPLNQMGNISVEEGRTLT 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S +DK ++ +ER I S+LGLNP G ++R+P+P TEE R LVKV A AEK+++ Sbjct: 67 ISPFDKSLIPQIERAIMMSDLGLNPSTSGTLIRLPLPPLTEETRRDLVKVVRAEAEKARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRN+RRD LK+ K + SED E IQ++TD + ++S +EK++E+M Sbjct: 127 SVRNVRRDANGDLKELLKEKEISEDEQRRGEEQIQQLTDKMVAQVESVLKEKEEELMTV 185 >gi|184201268|ref|YP_001855475.1| ribosome recycling factor [Kocuria rhizophila DC2201] gi|238689218|sp|B2GKT3|RRF_KOCRD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|183581498|dbj|BAG29969.1| ribosome recycling factor [Kocuria rhizophila DC2201] Length = 185 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 61/178 (34%), Positives = 101/178 (56%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + RMG + K D T+RTGR +P++ + V YG+ PL Q+A+ E R L Sbjct: 6 LSDATTRMGKAVDAAKTDFSTVRTGRANPALFSSLLVAYYGTPTPLQQLASFQTPEARTL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +D+ + +E+ + +S++G NP +G V+R+ +PE TEERR VK+ H AE ++ Sbjct: 66 LITPYDRSALNDIEKALRDSDIGANPANDGNVIRVVMPELTEERRKEYVKIVHGKAEDAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +SVRN+RR + ++K K G ED E D+ T I +D + K+ E++ Sbjct: 126 VSVRNVRRHAKEAIEKLVKDGDVGEDDGKRGEKDLDAATKKHIDQVDELLKNKEAELL 183 >gi|16331151|ref|NP_441879.1| ribosome recycling factor [Synechocystis sp. PCC 6803] gi|3122780|sp|P74456|RRF_SYNY3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|1653645|dbj|BAA18557.1| ribosome releasing factor [Synechocystis sp. PCC 6803] Length = 182 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 68/177 (38%), Positives = 108/177 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +KD M ++ ++ T+RTGR + S+LD + VE YG+ PL +A + + + Sbjct: 3 LAELKDHMQKSVEATQRSFNTIRTGRANASLLDRITVEYYGAETPLKSLATIGTPDASTI 62 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +D + ++E+ I S+LGL P +G+V+R+ +P T ERR LVKVA AE+ K Sbjct: 63 VIQPFDMGSIGTIEKAISLSDLGLTPNNDGKVIRLNIPPLTAERRKELVKVAGKLAEEGK 122 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +++RNIRRD +D ++K K+ SED L+ +IQK+TD + K ID K+K+I Sbjct: 123 VAIRNIRRDAVDEVRKQEKNSDISEDEARDLQEEIQKLTDQSTKRIDELLAAKEKDI 179 >gi|163856844|ref|YP_001631142.1| ribosome recycling factor [Bordetella petrii DSM 12804] gi|229564222|sp|A9INV3|RRF_BORPD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|163260572|emb|CAP42874.1| frr [Bordetella petrii] Length = 186 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM ++ LK ++ +RTGR +LD V+VE YGS VP++QVANV +++ R + Sbjct: 8 KSAETRMAKSLDTLKVNLSKIRTGRAHTGILDHVQVEYYGSPVPVSQVANVNLVDARTIS 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V ++K M A++E+ I ES+LGLNP+ G +R+P+P TEERR L KV E +KI Sbjct: 68 VQPYEKPMAAAIEKAIRESDLGLNPMSLGDSIRVPMPALTEERRRDLTKVVKGEGEDAKI 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RR+ + LKK K + SED ++DIQK+TD + ID +K+ EIM Sbjct: 128 AVRNLRREANESLKKLVKDKEISEDDERRAQDDIQKLTDRNVTEIDKLITQKEAEIMTV 186 >gi|300023426|ref|YP_003756037.1| ribosome recycling factor [Hyphomicrobium denitrificans ATCC 51888] gi|299525247|gb|ADJ23716.1| ribosome recycling factor [Hyphomicrobium denitrificans ATCC 51888] Length = 187 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 90/178 (50%), Positives = 126/178 (70%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 D+ ++ RM ++ LK++ LRTGR S ++LD V+V YGS +PLNQVA V+V EPRM Sbjct: 7 DINEVEKRMRASLDALKREFSGLRTGRASANLLDPVQVMVYGSRMPLNQVATVSVPEPRM 66 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 + V VWD+ V +V++GI E+NLGLNPI++GQ+LR+P+P T +RR LVK+AH YAE+S Sbjct: 67 ISVQVWDRSNVTAVDKGIREANLGLNPIMDGQILRLPIPSLTADRRQELVKLAHKYAEQS 126 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 K++VRN+RR+ MD LKK K GK S+D +Q++TD IK +DS K+ EI Sbjct: 127 KVAVRNVRREAMDLLKKLEKDGKMSQDDHRGHSEKVQELTDRIIKEVDSTLVTKEAEI 184 >gi|88857974|ref|ZP_01132616.1| ribosome releasing factor [Pseudoalteromonas tunicata D2] gi|88819591|gb|EAR29404.1| ribosome releasing factor [Pseudoalteromonas tunicata D2] Length = 185 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 77/179 (43%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N RM ++ L + +RTGR PS+LD +KV YG+ PLNQVANV+V + R L Sbjct: 7 KNAATRMQKSVEALVSQLSKIRTGRAHPSLLDGLKVMYYGAETPLNQVANVSVEDARTLS 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +SV+DK + +VE+ I S+LGLNP+ G ++R+P+P TEERR L+KV A AE ++ Sbjct: 67 ISVFDKSLGQAVEKAILASDLGLNPMSSGMMIRVPLPPLTEERRKDLIKVVRAEAEAGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD +K K SED +++IQK+TD IK++D+ K+ E+M Sbjct: 127 AIRNIRRDANADVKALLKDKAISEDEQRKSDDEIQKLTDKFIKDLDAKLAVKEAELMEI 185 >gi|315651639|ref|ZP_07904650.1| ribosome recycling factor [Eubacterium saburreum DSM 3986] gi|315486093|gb|EFU76464.1| ribosome recycling factor [Eubacterium saburreum DSM 3986] Length = 184 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 77/181 (42%), Positives = 118/181 (65%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 ++ +D+M +I L ++ ++R GR +P +LD +KVE YG+ P+ QV N++V EPR+ Sbjct: 4 SIKKFEDKMTKSIDVLLEEYASIRAGRANPHVLDRIKVEYYGTPTPIQQVGNISVPEPRI 63 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 + +S W+K ++ +E+ I+ S+LG+NP +G +R+ PE TEERR LVK E Sbjct: 64 IQISPWEKSLLKEIEKAINMSDLGINPTNDGSCIRLVFPELTEERRKELVKDVKKKGEAC 123 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 K++VRNIRRD +D +KK K+G+ +ED V EN IQKITD I+ +D E+K KEI+ Sbjct: 124 KVAVRNIRRDAIDAVKKLEKAGEFTEDDVKDGENKIQKITDKAIERVDKAIEDKSKEILT 183 Query: 186 F 186 Sbjct: 184 V 184 >gi|295100640|emb|CBK98185.1| ribosome recycling factor [Faecalibacterium prausnitzii L2-6] Length = 184 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 75/181 (41%), Positives = 120/181 (66%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 + + +D+M + L++++ T+R GR +P +LD V V+ YGS P+ QVA+V V E R Sbjct: 4 NTKAFEDKMKSAVEHLERELKTVRAGRANPGVLDKVTVDYYGSPTPIQQVASVAVSEART 63 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 L ++ WD+ ++ ++ + I S++G+NPI +GQ +R+ P TEERR L K E++ Sbjct: 64 LTITPWDRTLLRAISKAILASDVGINPIDDGQTIRLNFPAPTEERRKQLAKEVSKMGEEA 123 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 K++VRN+RRD MD K +K+G+ +ED ++E D+QK+TD +KNID+ EEK+KEIM Sbjct: 124 KVAVRNVRRDAMDKAKAMKKAGELTEDTQKTMEEDVQKLTDKYVKNIDAAVEEKQKEIMS 183 Query: 186 F 186 Sbjct: 184 V 184 >gi|222151092|ref|YP_002560246.1| ribosome recycling factor [Macrococcus caseolyticus JCSC5402] gi|254809518|sp|B9EBD9|RRF_MACCJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|222120215|dbj|BAH17550.1| ribosome recycling factor [Macrococcus caseolyticus JCSC5402] Length = 185 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 77/180 (42%), Positives = 114/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + +K +M +I L++D +R G + ++LD V V YG+ P+ Q+A ++V EPRML Sbjct: 6 MNELKSKMEKSIESLQRDFAAIRAGHANANLLDRVSVVYYGAETPVQQLAGISVPEPRML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + + + I+ +NLG+NP +G V+RI VP TEERR LVK A AE SK Sbjct: 66 LVTPYDKTSIDDILKAINMANLGVNPTSDGNVIRITVPALTEERRKELVKEAKKEAENSK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIRRD D LKK+ K+G +ED + S +D+Q TD IK ID K+K+I+ Sbjct: 126 IAIRNIRRDANDALKKAEKAGDITEDDLKSFSDDVQAETDKFIKKIDELTASKEKDILEV 185 >gi|158520494|ref|YP_001528364.1| ribosome recycling factor [Desulfococcus oleovorans Hxd3] gi|238686879|sp|A8ZTM3|RRF_DESOH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|158509320|gb|ABW66287.1| ribosome recycling factor [Desulfococcus oleovorans Hxd3] Length = 185 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 70/179 (39%), Positives = 118/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + I+++MG T+ K D+ +RTGR S ++LD + V+ YG+ PLNQ+A+++V E R++V Sbjct: 7 EEIEEKMGKTLEVFKNDLKKVRTGRASLALLDGIVVDYYGTPTPLNQLASLSVPESRLIV 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + WD + VE+ I ++N+ L P +G+V+R+ +P TE+RR + K + AE+ K+ Sbjct: 67 IQPWDATAIKDVEKAILQANIDLTPSNDGKVIRLSIPPLTEDRRKEIAKRVNQMAEEHKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD + LK+ +K G SED + ++ +QK+TD I+ ID F+ K+KEI+ Sbjct: 127 AMRNIRRDANETLKQMKKDGDISEDESFAGKDKVQKVTDGYIERIDEVFKAKEKEILEL 185 >gi|126173691|ref|YP_001049840.1| ribosome recycling factor [Shewanella baltica OS155] gi|217974057|ref|YP_002358808.1| ribosome recycling factor [Shewanella baltica OS223] gi|304409565|ref|ZP_07391185.1| ribosome recycling factor [Shewanella baltica OS183] gi|307303923|ref|ZP_07583676.1| ribosome recycling factor [Shewanella baltica BA175] gi|166231224|sp|A3D2K8|RRF_SHEB5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|254809529|sp|B8E7R3|RRF_SHEB2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|125996896|gb|ABN60971.1| ribosome recycling factor [Shewanella baltica OS155] gi|217499192|gb|ACK47385.1| ribosome recycling factor [Shewanella baltica OS223] gi|304352083|gb|EFM16481.1| ribosome recycling factor [Shewanella baltica OS183] gi|306912821|gb|EFN43244.1| ribosome recycling factor [Shewanella baltica BA175] Length = 185 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 78/179 (43%), Positives = 112/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RMG + K M +RTGR PS+LD ++V YG+ PLNQVANV V + R L Sbjct: 7 KDAQERMGKCVDATKNQMAKVRTGRAHPSLLDSIQVSYYGTMTPLNQVANVGVEDSRTLS 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+V+D+ + +VE+ I S+LGLNP+ G LRIP+P TEERR +KV AE +I Sbjct: 67 VTVFDRSAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVVRNEAENGRI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD + +KK K+ +ED V E ++QK TD+ IK ID K+ E+M Sbjct: 127 AIRNVRRDAISEVKKLEKAKACTEDDVRRSEEEVQKFTDAHIKKIDEILAAKEIELMEV 185 >gi|30249677|ref|NP_841747.1| ribosome recycling factor [Nitrosomonas europaea ATCC 19718] gi|34924908|sp|Q82TZ8|RRF_NITEU RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|30180714|emb|CAD85626.1| Ribosome recycling factor [Nitrosomonas europaea ATCC 19718] Length = 185 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 64/179 (35%), Positives = 111/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + +M ++ LK D +R+GR +LD + V+ YG+ P+ Q+ANVT+ + R + Sbjct: 7 KSAEQKMQKSLDALKVDFSKVRSGRPHTGLLDHIMVDYYGTPTPIKQLANVTLADARTIG 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + WDK++ +++E+ I +S+LGLNP+ ++R+P+P TEERR L K+ AE +++ Sbjct: 67 IIPWDKKIFSAIEKAIRDSDLGLNPMTVSDMVRVPMPPLTEERRKDLTKIVKTEAEAARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD HLK+ K +ED +++IQK+TD I +D + K+ E+M Sbjct: 127 AMRNIRRDANAHLKELLKDKLIAEDEDRRAQDEIQKLTDRYIAEVDKLLQTKEAELMAV 185 >gi|320450765|ref|YP_004202861.1| ribosome recycling factor [Thermus scotoductus SA-01] gi|320150934|gb|ADW22312.1| ribosome recycling factor [Thermus scotoductus SA-01] Length = 185 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 78/177 (44%), Positives = 113/177 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + M ++ L+ ++ LRTGR +P++L +KVE YG+HVPLNQ+A VT + + LV Sbjct: 8 AETRAHMQKSLEALEHNLAGLRTGRANPALLLHLKVEYYGTHVPLNQIATVTAPDAKTLV 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V WD+ + ++E+ I +S+LGLNP +G L I +P TEERR LVK A YAE+ +I Sbjct: 68 VQSWDQNALKAIEKAIRDSDLGLNPANKGDALYINIPPLTEERRKELVKTARHYAEEGRI 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++RNIRR+ ++ LKK K SED E +IQKITD I D E+K++EI+ Sbjct: 128 AIRNIRREALEKLKKLSKELHLSEDDTKRAEAEIQKITDEFIAKADELLEKKEQEIL 184 >gi|125973518|ref|YP_001037428.1| ribosome recycling factor [Clostridium thermocellum ATCC 27405] gi|190360240|sp|A3DE56|RRF_CLOTH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|125713743|gb|ABN52235.1| ribosome recycling factor [Clostridium thermocellum ATCC 27405] Length = 183 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 73/179 (40%), Positives = 122/179 (68%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +NI+++M T+S LK ++ T+R GR + ++LD + V+ YG P+NQ+ ++V EPR++V Sbjct: 5 KNIEEKMKKTVSVLKDELNTVRAGRANAAILDRITVDYYGVPTPINQLGTISVPEPRVIV 64 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + WD +++ +E+ I +S++G+NP +G+V+R+ P TEERR L K+A Y E +K+ Sbjct: 65 IQPWDAQILKEIEKEIQKSDIGINPNNDGKVIRLVFPPLTEERRKELTKLAKKYGEDAKV 124 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++R+IRRDG++ K +K+G+ +ED + S E DIQ +TD I ID E K+KEI+ Sbjct: 125 AIRSIRRDGIEKKKAMKKNGEITEDDLKSAEKDIQNLTDKYIAEIDKLIEIKEKEILEV 183 >gi|94500625|ref|ZP_01307155.1| ribosome recycling factor [Oceanobacter sp. RED65] gi|94427180|gb|EAT12160.1| ribosome recycling factor [Oceanobacter sp. RED65] Length = 185 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 70/179 (39%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM +++ + + +RTGR PS+LD + V+ YG+ P+NQ+ANV V + R L Sbjct: 7 KDAEERMKKSLAAMIEAFKKVRTGRAHPSLLDGINVDYYGNPTPINQLANVNVEDGRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++ W+K +V +E+ I +S+LG+ P G+ +R+P+P TEE R +K A A AEK ++ Sbjct: 67 ITPWEKPLVPEIEKAIMKSDLGITPATSGETIRVPMPMLTEETRKGFIKQARAEAEKGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RN+RRD +K K + SED EN+IQK+TD I ++DS EK+K++M Sbjct: 127 SIRNVRRDANSSVKDLLKEKEISEDEERQAENEIQKLTDKFIADVDSLLVEKEKDLMQV 185 >gi|166365795|ref|YP_001658068.1| ribosome recycling factor [Microcystis aeruginosa NIES-843] gi|189044061|sp|B0JKT7|RRF_MICAN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166088168|dbj|BAG02876.1| ribosome releasing factor [Microcystis aeruginosa NIES-843] Length = 182 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 63/180 (35%), Positives = 107/180 (59%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++D+M T+ ++ T+RTGR + S+LD + VE YG PL +A ++ + + Sbjct: 3 LAEVQDQMQKTVESTQRAFNTIRTGRANASLLDRIVVEYYGMETPLKSLATISTPDATTI 62 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + +D+ + ++E+ I S++GL P +GQ +R+ +P T +RR LVK+A AE+ K Sbjct: 63 AIQPFDRTSMGAIEKAISLSDVGLTPSNDGQTIRLNIPPLTSDRRKELVKLAAKLAEEGK 122 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD +D ++K K + SED L++ +QK TD I I+ K+K+IM Sbjct: 123 VAIRNIRRDAIDAIRKREKGHEISEDESRDLQDQVQKSTDKFIAKIEDLLTTKEKDIMTV 182 >gi|72161083|ref|YP_288740.1| ribosome recycling factor [Thermobifida fusca YX] gi|123630034|sp|Q47S50|RRF_THEFY RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|71914815|gb|AAZ54717.1| ribosome recycling factor [Thermobifida fusca YX] Length = 185 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 65/180 (36%), Positives = 108/180 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K+D ++RTGR SP+ + VE YG+ P+NQ+A+ V EPRM+ Sbjct: 6 LLEAEEKMEKAVLVTKEDFASIRTGRPSPATFSRITVEYYGAMTPVNQLASFQVPEPRMV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +DK + ++E+ I ES+LG+NP +G ++R+ PE +EERR VKVA AE + Sbjct: 66 IISPYDKAAMPAIEKAIRESDLGVNPSNDGNIIRVVFPELSEERRKEYVKVARNKAEDGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRN+RR D + K+ K+G+ ED + ++ +T + ID + K+ E++ Sbjct: 126 TSVRNVRRQAKDAIDKAVKAGEIGEDEGHRAQKELDALTQKYVGEIDELLKHKESELLEV 185 >gi|302558125|ref|ZP_07310467.1| ribosome recycling factor [Streptomyces griseoflavus Tu4000] gi|302475743|gb|EFL38836.1| ribosome recycling factor [Streptomyces griseoflavus Tu4000] Length = 185 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 63/180 (35%), Positives = 107/180 (59%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K+D +RTGR P+M + + + YG+ P+NQ+A+ +V EPRM Sbjct: 6 LLEAEEKMEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGAPTPINQLASFSVPEPRMA 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV+ +DK + ++E+ I +S+LG+NP +G ++R+ PE TEERR +KVA A AE +K Sbjct: 66 VVTPFDKSALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEERRRDYIKVAKAKAEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+R++RR D + K K G+ ED E ++ T + +D + K+ E++ Sbjct: 126 VSIRSVRRKAKDAIDKMIKDGEVGEDEGRRAEKELDDTTAKYVAQVDELLKHKEAELLEV 185 >gi|329936702|ref|ZP_08286409.1| ribosome recycling factor [Streptomyces griseoaurantiacus M045] gi|329303932|gb|EGG47815.1| ribosome recycling factor [Streptomyces griseoaurantiacus M045] Length = 185 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 62/180 (34%), Positives = 105/180 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K+D +RTGR P+M + + + YG+ P+NQ+A+ +V EPRM Sbjct: 6 LLEAEEKMEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGAPTPINQLASFSVPEPRMA 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV+ +DK + ++E+ I +S+LG+NP +G ++R+ PE TEERR +KVA E +K Sbjct: 66 VVTPFDKTALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEERRREYIKVAKTKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 IS+R++RR D + K K G+ ED E ++ T + +D + K+ E++ Sbjct: 126 ISIRSVRRKAKDAIDKLIKDGEIGEDEGRRAEKELDDTTAKYVAQVDELLKHKEAELLEV 185 >gi|319943823|ref|ZP_08018104.1| ribosome recycling factor [Lautropia mirabilis ATCC 51599] gi|319743056|gb|EFV95462.1| ribosome recycling factor [Lautropia mirabilis ATCC 51599] Length = 187 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 69/179 (38%), Positives = 108/179 (60%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + +M I + + +RTGR P +LD + V+ YG+ P+NQVAN+++ + R L+ Sbjct: 9 KSAEQKMQKGIESFRNALSKIRTGRPHPGVLDHIHVDYYGTSTPINQVANISLADARTLL 68 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+VW+K M VE+ I +S+LG+NP G +R+P+P +EERR +VKV E +K+ Sbjct: 69 VNVWEKSMAVVVEKAIRDSDLGVNPQSMGTAIRVPMPPLSEERRREIVKVTKHEGEAAKV 128 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +R +RR+ D LK + K+ + SED + DIQK TD I ID K++EIM Sbjct: 129 VIRGVRREANDELKAAAKAKEISEDDERRGQEDIQKTTDRFIAEIDKLLAAKEQEIMTV 187 >gi|146281914|ref|YP_001172067.1| ribosome recycling factor [Pseudomonas stutzeri A1501] gi|145570119|gb|ABP79225.1| ribosome recycling factor [Pseudomonas stutzeri A1501] Length = 173 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 73/173 (42%), Positives = 102/173 (58%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M T+ L +RTGR PS+LD V V YG+ PL QVANV + R L ++V+DK Sbjct: 1 MKKTLEALDHAFAKIRTGRAHPSILDSVMVSYYGADTPLRQVANVVAEDSRTLALTVFDK 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 M+ +VE+ I S+LGLNP G +R+P+P TEE R K A A AE ++++VRNIR Sbjct: 61 SMIQAVEKAIMTSDLGLNPATAGTTIRVPMPALTEETRKGYTKQARAEAENARVAVRNIR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RD + LK K + SED ++D+QK+TD + ID E K+ ++M Sbjct: 121 RDAIAQLKDLVKEKEISEDEERRGQDDVQKLTDKYVAEIDKALEGKEADLMAV 173 >gi|262039426|ref|ZP_06012733.1| ribosome recycling factor [Leptotrichia goodfellowii F0264] gi|261746562|gb|EEY34094.1| ribosome recycling factor [Leptotrichia goodfellowii F0264] Length = 185 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 72/180 (40%), Positives = 111/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ +DRM + K +R GR S SMLD V VEAYG PLNQV V+ E R+L Sbjct: 6 LKETEDRMHKALENTKDKFSHVRAGRASVSMLDGVSVEAYGVMTPLNQVGTVSAPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK ++ ++E+ I ++NLG NP +G+++R+ VPE TE+RR VK+ AE+ K Sbjct: 66 TIDPWDKSIIPAIEKVILQANLGFNPSNDGKIIRLVVPELTEDRRKEYVKLVKKEAEEGK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RN+R+D + ++K K + +ED + S E +QK+TD I ID +K+KE++ Sbjct: 126 VAIRNVRKDVNNKIRKLEKDSEITEDELKSGEEKVQKMTDKFIAEIDDVLAKKEKELLKV 185 >gi|296171523|ref|ZP_06852787.1| ribosome recycling factor [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894085|gb|EFG73846.1| ribosome recycling factor [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 185 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 64/180 (35%), Positives = 109/180 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++M +S + D+ T+RTGR +P M + ++ YG+ P+ Q+A++ V E R++ Sbjct: 6 LFDAEEKMEKAVSVARDDLSTIRTGRANPGMFSRIVIDYYGATTPITQLASINVPEARLV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ ++ + ++E I S+LG+NP +G ++R+ VP+ TEERR LVK A + E ++ Sbjct: 66 VIKPYEASQLGAIENAIRNSDLGVNPTNDGTLIRVAVPQLTEERRRELVKQAKSKGEDAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +SVRNIRR M+ L + RK G+A ED V E ++ K T ID + K+ E++ Sbjct: 126 VSVRNIRRKAMEELHRIRKDGEAGEDEVGRAEKELDKATHQYTAQIDELVKHKEGELLEV 185 >gi|294340704|emb|CAZ89096.1| Ribosome recycling factor (Ribosome-releasing factor) (RRF) [Thiomonas sp. 3As] Length = 186 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N +++M +I LK D+ +RTGR +LD V V+ YG+ + +NQVAN+ +++ R + Sbjct: 8 KNTEEKMHKSIESLKLDLAKVRTGRAHTGLLDHVMVDYYGTMMAINQVANMNLVDARTIS 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K+MV +VE+ I ES+LGLNP +G ++R+P+P TEERR LVKV E +K+ Sbjct: 68 VQPWEKKMVQAVEKAIRESDLGLNPQTQGDIIRVPMPALTEERRRDLVKVIKQEGEGAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD LK K+ + SED ++++QKITD I ID +K+ EIM Sbjct: 128 AVRNLRRDANQSLKDLVKAKEVSEDDERRAQDEVQKITDRCIAEIDKQLAQKEAEIMAV 186 >gi|299823044|ref|ZP_07054930.1| ribosome recycling factor [Listeria grayi DSM 20601] gi|299816573|gb|EFI83811.1| ribosome recycling factor [Listeria grayi DSM 20601] Length = 185 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 80/185 (43%), Positives = 120/185 (64%), Gaps = 2/185 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 N+VI K RM L K + T+R GR + S+LD + V+ YG+ P+NQ+A++++ Sbjct: 3 NEVI--TQSKARMEKAEHSLSKQLGTIRAGRANASLLDRITVDYYGAPTPINQIASISIP 60 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 E R+LV++ +DK + VE+ I +S+LGL+P +G VLR+ +P+ TEERR LVK Sbjct: 61 EARLLVITPFDKNSLEDVEKAILKSDLGLSPNNDGTVLRLSIPQPTEERRRELVKEVKKE 120 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 AE++K+++RNIRRD + LKK KSG+ +ED + S D+Q ITD +IK ID + K+ Sbjct: 121 AEEAKVAIRNIRRDANEELKKLEKSGEITEDDLRSYGEDVQAITDESIKRIDEIAKNKEA 180 Query: 182 EIMHF 186 EIM Sbjct: 181 EIMEV 185 >gi|255659930|ref|ZP_05405339.1| ribosome recycling factor [Mitsuokella multacida DSM 20544] gi|260847801|gb|EEX67808.1| ribosome recycling factor [Mitsuokella multacida DSM 20544] Length = 185 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 72/180 (40%), Positives = 116/180 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + ++RM +I LK + +LR GR +PS+LD V V YG+ P+NQ+A VTV EPRM+ Sbjct: 6 LASHEERMKKSIEALKHEFASLRAGRATPSLLDKVMVNYYGAPTPVNQIAKVTVPEPRMI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ W+K ++ +E I +S+LGL+P +G +R+ +P T+ERR LVK + E++K Sbjct: 66 MIQPWEKSILHDIEVAIMKSDLGLSPNSDGTAIRLSIPALTQERRQELVKTVNKKTEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRDG + +KK K+ + +ED + +QK+ D +K D+ E K+KE+M Sbjct: 126 VALRNIRRDGNEDIKKLEKAKEITEDESKRGQESMQKLVDKYVKLADAAKEVKEKEVMEV 185 >gi|119386701|ref|YP_917756.1| ribosome recycling factor [Paracoccus denitrificans PD1222] gi|166230812|sp|A1B966|RRF_PARDP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|119377296|gb|ABL72060.1| ribosome recycling factor [Paracoccus denitrificans PD1222] Length = 187 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 79/182 (43%), Positives = 119/182 (65%), Gaps = 1/182 (0%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 ID +++ RM + L+ + +LRTGR S SM++ + V+AYGS P+NQ+ V V EPR Sbjct: 7 IDTDDLERRMKGAMESLRHEFASLRTGRASASMVEPIMVDAYGSPTPINQIGTVNVPEPR 66 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ +++WDK +V E+ I ES LG+NP + G ++ +P+PE EERR L +VA YAE Sbjct: 67 MVTINIWDKGLVGKAEKAIRESGLGINPQLNGTIIMLPIPELNEERRRELTRVAAQYAEH 126 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++++RN+RRDGMD +KK+ KS SED E +Q++TD I ++D E K+ EIM Sbjct: 127 ARVAIRNVRRDGMDQIKKA-KSSGMSEDDQKFWEGAVQELTDKMIASVDQALEAKQAEIM 185 Query: 185 HF 186 Sbjct: 186 QV 187 >gi|313836793|gb|EFS74507.1| ribosome recycling factor [Propionibacterium acnes HL037PA2] gi|314929799|gb|EFS93630.1| ribosome recycling factor [Propionibacterium acnes HL044PA1] gi|314972228|gb|EFT16325.1| ribosome recycling factor [Propionibacterium acnes HL037PA3] gi|328907655|gb|EGG27419.1| ribosome recycling factor [Propionibacterium sp. P08] Length = 184 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 66/186 (35%), Positives = 114/186 (61%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ +I ++ + +MG + +++ +RTGR +P+M + + VE YG+ PL Q+A+ V Sbjct: 1 MSDII--KDAEKKMGSAVGHAREEFAAIRTGRANPAMFNKLMVEYYGTPTPLQQLASFQV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R ++++ +DK V VE+ I +S+LG+NP +G V+R +P TEERR +K+A Sbjct: 59 PEARTVLIAPFDKSCVNDVEKAIRDSDLGVNPSNDGNVVRCVLPALTEERRKEYIKMAKT 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE+ +I+VRNIRR D +KK K + SED + LE ++ ++T ++ ID + K+ Sbjct: 119 KAEEGRIAVRNIRRASNDVVKKQEKDKEISEDEMTRLEKELDQVTRKYVEQIDELLKSKE 178 Query: 181 KEIMHF 186 E++ Sbjct: 179 SELLEI 184 >gi|264679364|ref|YP_003279271.1| ribosome recycling factor [Comamonas testosteroni CNB-2] gi|299532323|ref|ZP_07045716.1| ribosome recycling factor [Comamonas testosteroni S44] gi|262209877|gb|ACY33975.1| ribosome recycling factor [Comamonas testosteroni CNB-2] gi|298719731|gb|EFI60695.1| ribosome recycling factor [Comamonas testosteroni S44] Length = 186 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 81/179 (45%), Positives = 119/179 (66%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N + +MG +I LK ++ +RTGR +P++LD + VE YGS VPL+QVANV++L+ R + Sbjct: 8 KNTETKMGQSIEALKNNLARVRTGRANPALLDAIHVEYYGSMVPLSQVANVSLLDSRTIS 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K M A VE+ I ES+LGLNP G ++R+P+P +EERR + K+A E +KI Sbjct: 68 VQPWEKNMAAKVEKAIRESDLGLNPASMGDLIRVPMPPMSEERRKEMTKLARNEGENAKI 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD + +KK K +ASED E +IQKITD I +D+ K+++IM Sbjct: 128 AVRNLRRDANEGVKKLVKDKEASEDDQKRSEAEIQKITDKHIAEVDTLVAAKEQDIMAV 186 >gi|271963401|ref|YP_003337597.1| ribosome recycling factor [Streptosporangium roseum DSM 43021] gi|270506576|gb|ACZ84854.1| ribosome recycling factor [Streptosporangium roseum DSM 43021] Length = 185 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 69/180 (38%), Positives = 110/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M +S K D +RTGRV+PSM + + E YG+ P+ Q+A+ V E RM+ Sbjct: 6 LLEAEEKMDKAVSVAKDDFAGIRTGRVTPSMFNKISAEYYGTPTPIQQLASFHVPEARMV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +DK +A++E+ I S+LG+NP +GQV+R+ PE +EERR +KVA AE+SK Sbjct: 66 IIQPFDKGSMAAIEKAIRNSDLGVNPGNDGQVIRVAFPELSEERRREYIKVARNKAEQSK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+RNIRR+ + L K K +A ED V E ++ +T + ID + K+ E++ Sbjct: 126 VSIRNIRRNAKETLDKMVKDSEAGEDEVRRAEKELDDLTQKHVAKIDELLKHKEAELLEV 185 >gi|217072182|gb|ACJ84451.1| unknown [Medicago truncatula] gi|217072782|gb|ACJ84751.1| unknown [Medicago truncatula] Length = 262 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 68/179 (37%), Positives = 116/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++K RM T+ +K + ++RTGR +PSMLD ++VE YGS V L +A ++ + L+ Sbjct: 84 NDVKSRMERTLDNVKTNFSSIRTGRATPSMLDKIEVEYYGSPVSLKTIAQISTPDASSLL 143 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 VS +DK + ++E+ I S++G+ P +G+V+R+ +P+ T +RR L K+ E+ K+ Sbjct: 144 VSPYDKSSLKAIEKAIVNSDVGMTPNNDGEVIRLSIPQLTSDRRKELTKIVSKQVEEGKV 203 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD + +K K K SED V L +D+QK+TD IK +D+ +++K+KE++ Sbjct: 204 ALRNIRRDALKAYEKLEKDKKLSEDNVKDLSSDLQKLTDDYIKKVDALYKQKEKELLTV 262 >gi|183981840|ref|YP_001850131.1| ribosome recycling factor Frr [Mycobacterium marinum M] gi|238689247|sp|B2HJP0|RRF_MYCMM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|183175166|gb|ACC40276.1| ribosome recycling factor Frr [Mycobacterium marinum M] Length = 185 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 69/180 (38%), Positives = 113/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++M +S ++DM T+RTGR +P M + ++ YG+H P+ Q+A++ V E RM+ Sbjct: 6 LFDAEEKMEKAVSVAREDMATIRTGRANPGMFSRIVIDYYGTHTPITQLASINVPEARMV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ ++ + ++E I S+LG+NP +G ++R+ VP+ TEERR LVK A E+++ Sbjct: 66 VIKPYEANQLHAIETAIRNSDLGVNPTNDGTIIRVAVPQLTEERRRDLVKQAKHKGEEAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +SVRNIRR M+ L + RK G+A ED VA E D+ K T + ID + K+ E++ Sbjct: 126 VSVRNIRRKAMEELHRIRKDGEAGEDEVARAEKDLDKSTHQYVAQIDELVKHKEGELLEV 185 >gi|303258058|ref|ZP_07344066.1| ribosome recycling factor [Burkholderiales bacterium 1_1_47] gi|330998729|ref|ZP_08322458.1| ribosome recycling factor [Parasutterella excrementihominis YIT 11859] gi|302859077|gb|EFL82160.1| ribosome recycling factor [Burkholderiales bacterium 1_1_47] gi|329576468|gb|EGG57980.1| ribosome recycling factor [Parasutterella excrementihominis YIT 11859] Length = 186 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 70/179 (39%), Positives = 108/179 (60%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + M +I LK+++M +RTGR +L+ + V+ YG P++QVA + + + R + Sbjct: 8 SQSEHHMKRSIETLKENLMKIRTGRAHTGLLEHITVDYYGCPTPISQVAQLGLADARTIT 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K+MVA VE+ I S+LGLNP G+V+R+P+P TEERR L KV + E++K+ Sbjct: 68 VQPWEKKMVAVVEKAIRNSDLGLNPATSGEVIRVPMPPLTEERRRDLTKVVRSEGEETKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD + + K + SED +IQK+TD I +D EK+KEIM Sbjct: 128 AIRNLRRDANNKVAALVKEKEISEDDERRSNTEIQKLTDKYIGEVDKLIAEKEKEIMTV 186 >gi|302879001|ref|YP_003847565.1| ribosome recycling factor [Gallionella capsiferriformans ES-2] gi|302581790|gb|ADL55801.1| ribosome recycling factor [Gallionella capsiferriformans ES-2] Length = 185 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 70/179 (39%), Positives = 111/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM ++ L+ D+ +RTGR +LD V V+ YGS + QVAN+T+++ R + Sbjct: 7 KDAEARMRKSLDALRADLGKVRTGRAHTGLLDHVMVDYYGSPTLVTQVANITLVDARTIG 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V ++K MV VER I +++LGLNP G+++R+P+P TEERR ++K+ + E +KI Sbjct: 67 VQPYEKSMVGKVERAIRDADLGLNPATNGELIRVPMPMLTEERRRDMIKLVKSEGEDAKI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD LK K + SED +++DIQK+TD + ID K+ ++M Sbjct: 127 AVRNIRRDANGSLKDLLKKKEISEDDERRVQDDIQKLTDRFVSEIDQMLAAKEVDLMAV 185 >gi|190360293|sp|Q28PI7|RRF_JANSC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor Length = 184 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 85/185 (45%), Positives = 123/185 (66%), Gaps = 4/185 (2%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 + ++D +++ RM I+ L+ + +LRTGR S SML+ V V+AYG+ P+NQV V V Sbjct: 4 DFMLDTDDLERRMEGAIASLRTEFASLRTGRASASMLEPVMVDAYGAMTPINQVGTVNVP 63 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 EPRM+ V+VWDK +V VE+ I ES LG+NP + G ++ +P+PE EERR L KVA Y Sbjct: 64 EPRMVTVNVWDKGLVNKVEKAIRESGLGINPQMNGTIIMLPIPELNEERRRELTKVAGTY 123 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 AE ++++VRN+RRDGMD +KK+ SED E +Q++TD+ IK +D E K++ Sbjct: 124 AENARVAVRNVRRDGMDQIKKA----DTSEDDAKFWEGAVQELTDTFIKRVDDQLETKQE 179 Query: 182 EIMHF 186 EIM Sbjct: 180 EIMQV 184 >gi|296536126|ref|ZP_06898255.1| ribosome recycling factor [Roseomonas cervicalis ATCC 49957] gi|296263538|gb|EFH10034.1| ribosome recycling factor [Roseomonas cervicalis ATCC 49957] Length = 190 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 82/176 (46%), Positives = 118/176 (67%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q++ RM + LKK+ LRTGR SP++L+ ++VE YG++ PL+QVANV+V P +L Sbjct: 12 QDLTRRMDGALEVLKKEFSGLRTGRASPALLEPIRVEVYGANQPLSQVANVSVGGPGLLS 71 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V VWD+ +VE I +S LGLNP EGQ +R+P+P T+ERR L K AH YAE +K+ Sbjct: 72 VQVWDRSAAKAVEIAIRDSGLGLNPQTEGQTIRVPLPPLTQERRNELAKQAHKYAEAAKV 131 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +VR +RRDGM+ +K K + +D A +++QK+TD TIK +D EK+K+I Sbjct: 132 AVRGVRRDGMESIKGWEKKSEIGKDDAAKWSDEVQKLTDQTIKKVDELLAEKEKDI 187 >gi|296268981|ref|YP_003651613.1| ribosome recycling factor [Thermobispora bispora DSM 43833] gi|296091768|gb|ADG87720.1| ribosome recycling factor [Thermobispora bispora DSM 43833] Length = 185 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 62/180 (34%), Positives = 108/180 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M +S K+D T+R GR++P++ + + V+ YGS PL Q+A+ V E R++ Sbjct: 6 LLEAEEKMDKAVSVAKEDFATIRAGRITPAIFNKINVDYYGSPTPLQQLASFHVPEARLV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +DK + ++E+ I +S+LG+NP +G V+R+ PE +EERR +K+A AE ++ Sbjct: 66 IIQPFDKSALNAIEKAIRDSDLGVNPSNDGNVIRVVFPELSEERRKEYIKMARNKAESAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +SVRNIRR + L K K G+ ED V ++ +T + ID + K+ E++ Sbjct: 126 VSVRNIRRHAKEALDKLVKEGQVGEDEVHRAVKELDDLTHKHVAKIDDMLKHKEAELLEV 185 >gi|293605059|ref|ZP_06687452.1| ribosome recycling factor [Achromobacter piechaudii ATCC 43553] gi|292816561|gb|EFF75649.1| ribosome recycling factor [Achromobacter piechaudii ATCC 43553] Length = 186 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ RM ++ LK ++ +RTGR +LD V+VE YGS VP+ QVANV +++ R + Sbjct: 8 KSADARMAKSLDTLKINLGKIRTGRAHTGILDHVQVEYYGSPVPVGQVANVNLVDARTIS 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V ++K M +E+ I ES+LGLNPI G +R+P+P TEERR L KV + E +KI Sbjct: 68 VQPYEKHMAGPIEKAIRESDLGLNPISMGDTIRVPMPALTEERRRDLTKVVRSEGEDAKI 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RR+ + LKK K + SED ++D+QK+TD ++ +ID +K+ EIM Sbjct: 128 AVRNLRREANEALKKLVKDKEISEDDERRAQDDVQKLTDRSVADIDKMVVQKEAEIMTV 186 >gi|48474234|sp|Q8L1H5|RRF_PARZE RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|20429121|emb|CAD24430.1| ribosome recycling factor [Paracoccus zeaxanthinifaciens] Length = 187 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 85/182 (46%), Positives = 120/182 (65%), Gaps = 1/182 (0%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 IDL +++ RM + L+ + +LRTGR S SM++ V+VEAYG P+NQV V V EPR Sbjct: 7 IDLDDLERRMKGAMDSLRAEFASLRTGRASASMVEPVQVEAYGQMTPINQVGTVNVPEPR 66 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ ++VWDK MV VE+ I ES LG+NP G ++ +P+PE EERR L KVA YAE Sbjct: 67 MVTINVWDKGMVGKVEKAIRESGLGINPQTNGTIIMLPIPELNEERRRELTKVAAQYAEH 126 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++++RN+RRDGMD +KK + +G ED E +Q++TD +I N+D E K+ EIM Sbjct: 127 ARVAIRNVRRDGMDQIKKGKANG-MPEDDQKFWETAVQELTDKSIGNVDQALEAKQAEIM 185 Query: 185 HF 186 Sbjct: 186 QV 187 >gi|297566374|ref|YP_003685346.1| ribosome recycling factor [Meiothermus silvanus DSM 9946] gi|296850823|gb|ADH63838.1| ribosome recycling factor [Meiothermus silvanus DSM 9946] Length = 185 Score = 234 bits (599), Expect = 3e-60, Method: Composition-based stats. Identities = 71/176 (40%), Positives = 108/176 (61%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 ++ M + L+ + LRTGR +P++L ++V+ YGS +P+ Q+ +T + R LV+ Sbjct: 8 ETRNHMQKALDALEHHLSGLRTGRANPAILKSIRVDYYGSLMPIEQLGTITAPDARTLVI 67 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 WD + S+E+ I +S+LGLNP +G L I +P TEERR LVK YAE+++++ Sbjct: 68 QSWDAGALKSIEKAIRDSDLGLNPNNKGDSLFISIPPLTEERRRELVKAVKHYAEEARVA 127 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 VRN RR+ +D KK K SED + E +IQKITD I +DS E+K+ EI+ Sbjct: 128 VRNARREAVDKAKKLGKEQHLSEDDIKRAEAEIQKITDEFIGKVDSALEKKEHEIL 183 >gi|289450226|ref|YP_003475249.1| ribosome recycling factor [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184773|gb|ADC91198.1| ribosome recycling factor [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 187 Score = 234 bits (599), Expect = 3e-60, Method: Composition-based stats. Identities = 70/176 (39%), Positives = 114/176 (64%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 +DRM +I LK+++ ++R GR +P +LD + + YG+ PLNQVAN+ V EPRM+ +S Sbjct: 12 EDRMNKSIDNLKENLNSVRAGRANPHILDRITISYYGAETPLNQVANIQVPEPRMITISP 71 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 WD ++ +E+ + S++G+NP +G+++R+ P TEERR L K Y E++KI VR Sbjct: 72 WDPSSLSLIEKAVLMSDIGINPNNDGKMIRLVFPTLTEERRKDLAKTVAKYGEETKIVVR 131 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 N+RR+ +D K KS + S+D + ++E+D+QKIT+ ID K+K++M Sbjct: 132 NVRREAIDKFKALHKSKELSDDDIRTVEDDVQKITNRFTAKIDEIVAAKEKDLMEI 187 >gi|78485626|ref|YP_391551.1| ribosome recycling factor [Thiomicrospira crunogena XCL-2] gi|123555416|sp|Q31G46|RRF_THICR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|78363912|gb|ABB41877.1| ribosome recycling factor [Thiomicrospira crunogena XCL-2] Length = 185 Score = 234 bits (599), Expect = 3e-60, Method: Composition-based stats. Identities = 74/186 (39%), Positives = 117/186 (62%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 ++++ D + DRM ++ L+ + +RTGR PS+LD VKV+ YGS VP++QVANV V Sbjct: 2 IDEIFD--DANDRMTKSVENLESNFAKIRTGRAHPSILDAVKVDYYGSEVPVSQVANVNV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R L V W++ MV+ VE+ I S++G+NP+ G V+RIP+P TEERR +K+A + Sbjct: 60 EDARTLTVQPWEQSMVSVVEKAIMTSDIGVNPVTTGNVMRIPMPPLTEERRKEFIKLAKS 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE++K+++RNIRRD K K + ++D + E IQK TD + +D +K+ Sbjct: 120 EAEQTKVAIRNIRRDANADFKNLNKDKEITDDELRQAEEQIQKATDEHVSQVDQMLAKKE 179 Query: 181 KEIMHF 186 + +M Sbjct: 180 ESLMEI 185 >gi|257458508|ref|ZP_05623645.1| ribosome recycling factor [Treponema vincentii ATCC 35580] gi|257444105|gb|EEV19211.1| ribosome recycling factor [Treponema vincentii ATCC 35580] Length = 184 Score = 234 bits (599), Expect = 3e-60, Method: Composition-based stats. Identities = 76/175 (43%), Positives = 117/175 (66%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 +++M +I+ LK + LRTGR S S+ D ++V++YG PLNQVA +++ E R++V+ Sbjct: 9 EEKMKKSIAALKDEFNALRTGRASTSLFDKIRVDSYGQPTPLNQVATISIPEARLVVIQP 68 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 WDK ++ +E+ I +S L LNP +G+++RI +P TEERR L K A +AE+ ++++R Sbjct: 69 WDKSLLGEIEKAILKSELSLNPANDGKLIRIAIPPLTEERRKELAKQAKNFAEQCRVAIR 128 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 NIRRDG+D KK +K G SED + + E QK TD+ I +I+ EK+KEIM Sbjct: 129 NIRRDGIDEAKKQQKDGLLSEDALKTAEEKFQKATDAHINDINKLLAEKEKEIME 183 >gi|58581596|ref|YP_200612.1| ribosome recycling factor [Xanthomonas oryzae pv. oryzae KACC10331] gi|84623520|ref|YP_450892.1| ribosome recycling factor [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|166712735|ref|ZP_02243942.1| ribosome recycling factor [Xanthomonas oryzae pv. oryzicola BLS256] gi|188577166|ref|YP_001914095.1| ribosome recycling factor [Xanthomonas oryzae pv. oryzae PXO99A] gi|62900777|sp|Q5H1E4|RRF_XANOR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|123522271|sp|Q2P4A9|RRF_XANOM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238689544|sp|B2SR02|RRF_XANOP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|58426190|gb|AAW75227.1| ribosome recycling factor [Xanthomonas oryzae pv. oryzae KACC10331] gi|84367460|dbj|BAE68618.1| ribosome recycling factor [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188521618|gb|ACD59563.1| ribosome recycling factor [Xanthomonas oryzae pv. oryzae PXO99A] Length = 185 Score = 234 bits (599), Expect = 3e-60, Method: Composition-based stats. Identities = 81/179 (45%), Positives = 118/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ + RM +I L+ + T+RTGR SP++LD +KV+AYG+ PLNQVA+++V E R LV Sbjct: 7 QDAQTRMTKSIDALRHSLTTVRTGRASPALLDGIKVKAYGTDTPLNQVASISVSEGRSLV 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S++DK M+ VE+ I+ S+LGL P V G V+R+ +P TEERR L K H E SK+ Sbjct: 67 ISLFDKGMIKDVEKAIYASDLGLTPTVVGTVIRLNLPPLTEERRKELSKSVHGEGEDSKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD +K K +ED E+DIQK+TD IK++D + K++E+M Sbjct: 127 AIRNIRRDANQQVKDLLKDKAVTEDEARGAEDDIQKLTDKAIKDVDEVVKAKEQELMTV 185 >gi|242242542|ref|ZP_04796987.1| peptide chain release factor RF4 [Staphylococcus epidermidis W23144] gi|242233969|gb|EES36281.1| peptide chain release factor RF4 [Staphylococcus epidermidis W23144] gi|319401451|gb|EFV89661.1| ribosome recycling factor [Staphylococcus epidermidis FRI909] Length = 184 Score = 234 bits (599), Expect = 3e-60, Method: Composition-based stats. Identities = 79/186 (42%), Positives = 122/186 (65%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ +I ++ K RM +I L +++ + GR + ++L+ V V+ YG+ P+ Q+A++ V Sbjct: 1 MSDII--KDTKSRMQKSIDNLSRELANISAGRANSNLLNGVTVDYYGAPTPVQQLASINV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R+LV+S +DK VA +E+ I +NLG+NP +G+V+RI VP TEERR LVK Sbjct: 59 PEARLLVISPYDKTSVADIEKAIIAANLGVNPTSDGEVIRISVPALTEERRKELVKEVKK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E +K+S+RNIRRD D LKK K+G +ED + S +D+QK TD++IK+ID +K+ Sbjct: 119 IGEDAKVSIRNIRRDINDQLKKDEKNGDITEDDLRSQTDDVQKATDNSIKDIDQLVADKE 178 Query: 181 KEIMHF 186 K+IM Sbjct: 179 KDIMSV 184 >gi|260437176|ref|ZP_05790992.1| ribosome recycling factor [Butyrivibrio crossotus DSM 2876] gi|292810489|gb|EFF69694.1| ribosome recycling factor [Butyrivibrio crossotus DSM 2876] Length = 184 Score = 234 bits (599), Expect = 3e-60, Method: Composition-based stats. Identities = 75/186 (40%), Positives = 114/186 (61%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+++I + +++M + L D +T+R GR +P +LD +KV+ YG+ P QVANV+V Sbjct: 1 MSEII--KTYEEKMIKSCDTLAADYVTIRAGRANPHILDKLKVDYYGTPTPFQQVANVSV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E RM+ + W+ ++ +E+ I S+LGL P +G+V+R+ PE TE+RR LVK Sbjct: 59 PEARMIQIQPWETSLLKEIEKAILMSDLGLTPTNDGKVIRLVFPELTEDRRKELVKDIKK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E +K+++RNIRRD D +KK K SED V E+ IQK+TD + +D +EK Sbjct: 119 KGENTKVAIRNIRRDANDAIKKLSKDTDMSEDEVKKNEDSIQKLTDKYVAQVDKMIDEKS 178 Query: 181 KEIMHF 186 KEIM Sbjct: 179 KEIMTV 184 >gi|323489579|ref|ZP_08094806.1| ribosome recycling factor [Planococcus donghaensis MPA1U2] gi|323396710|gb|EGA89529.1| ribosome recycling factor [Planococcus donghaensis MPA1U2] Length = 185 Score = 234 bits (599), Expect = 3e-60, Method: Composition-based stats. Identities = 69/180 (38%), Positives = 113/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + + +M + I +D+ ++R GR +PS+LD + ++ YGS P+NQVA +++ E R++ Sbjct: 6 MNETQSKMNNAIQAFSRDLASIRAGRATPSILDKLTIDYYGSPTPVNQVAGISIPEARLI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +DK ++ +E+ I +S+LGL+P +G V+R+ VP TEERR LVK AE++K Sbjct: 66 MIQPYDKSVLGDIEKAILKSDLGLSPSNDGSVIRLAVPALTEERRKDLVKQVKKEAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I +RNIRRD D KK K + + D + +D+QK+TD I ID ++K+K IM Sbjct: 126 IGIRNIRRDANDEFKKLEKKSEITVDDLRGYSDDVQKLTDDNIAKIDEMAKDKEKGIMEV 185 >gi|307546391|ref|YP_003898870.1| ribosome recycling factor [Halomonas elongata DSM 2581] gi|307218415|emb|CBV43685.1| K02838 ribosome recycling factor [Halomonas elongata DSM 2581] Length = 185 Score = 234 bits (599), Expect = 3e-60, Method: Composition-based stats. Identities = 72/179 (40%), Positives = 106/179 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM ++ L + +RTGR PS+LD V VE YGS +P+NQVA+V V + R L Sbjct: 7 KDAESRMKKSLEALHNNFNKIRTGRAHPSILDAVTVEYYGSQMPINQVASVNVEDARTLT 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W++ MV VE+ I + LGLNP G V+R+P+P TEE R +K A AE +++ Sbjct: 67 VVPWEQSMVPKVEKAIMTAELGLNPASAGNVIRVPMPMLTEETRKGYIKQARQEAENTRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD +K K +ED E++IQK+TD + ID E K+ ++M Sbjct: 127 AVRNVRRDANHEIKTLLKDKDITEDDQRQGEDEIQKLTDKIVGEIDKALESKEHDLMQV 185 >gi|221066088|ref|ZP_03542193.1| ribosome recycling factor [Comamonas testosteroni KF-1] gi|220711111|gb|EED66479.1| ribosome recycling factor [Comamonas testosteroni KF-1] Length = 186 Score = 234 bits (599), Expect = 3e-60, Method: Composition-based stats. Identities = 80/179 (44%), Positives = 118/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N + +MG +I LK ++ +RTGR +P++LD + VE YGS VPL+QVANV++L+ R + Sbjct: 8 KNTETKMGQSIEALKNNLARVRTGRANPALLDAIHVEYYGSMVPLSQVANVSLLDSRTIS 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K M A VE+ I ES+LGLNP G ++R+P+P +EERR + K+A E KI Sbjct: 68 VQPWEKNMAAKVEKAIRESDLGLNPASMGDLIRVPMPPMSEERRKEMTKLARNEGENGKI 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD + +KK K +ASED E +IQKITD I +D+ K+++IM Sbjct: 128 AIRNLRRDANESVKKLVKDKEASEDDQKRSEAEIQKITDKHIAEVDTLVAAKEQDIMAV 186 >gi|41409043|ref|NP_961879.1| ribosome recycling factor [Mycobacterium avium subsp. paratuberculosis K-10] gi|118463206|ref|YP_882906.1| ribosome recycling factor [Mycobacterium avium 104] gi|254776160|ref|ZP_05217676.1| ribosome recycling factor [Mycobacterium avium subsp. avium ATCC 25291] gi|47116995|sp|P61307|RRF_MYCPA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166230799|sp|A0QJ18|RRF_MYCA1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|41397402|gb|AAS05262.1| Frr [Mycobacterium avium subsp. paratuberculosis K-10] gi|118164493|gb|ABK65390.1| ribosome recycling factor [Mycobacterium avium 104] Length = 185 Score = 234 bits (599), Expect = 3e-60, Method: Composition-based stats. Identities = 67/180 (37%), Positives = 110/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++M ++ + D+ T+RTGR +P M + ++ YG+ P+ Q+A++ V E R++ Sbjct: 6 LFDAEEKMEKAVAVARDDLSTIRTGRANPGMFSRIVIDYYGAATPITQLASINVPEARLV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ ++ V ++E I S+LG+NP +G ++R+ VP+ TEERR LVK A + E +K Sbjct: 66 VIKPYEASQVGAIETAIRNSDLGVNPTNDGTLIRVAVPQLTEERRRELVKQAKSKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +SVRNIRR M+ L + RK G+A ED V E D+ K T I ID + K+ E++ Sbjct: 126 VSVRNIRRKAMEELHRIRKDGEAGEDEVGRAEKDLDKTTHQYITQIDELVKHKEGELLEV 185 >gi|332653365|ref|ZP_08419110.1| ribosome recycling factor [Ruminococcaceae bacterium D16] gi|332518511|gb|EGJ48114.1| ribosome recycling factor [Ruminococcaceae bacterium D16] Length = 184 Score = 234 bits (599), Expect = 3e-60, Method: Composition-based stats. Identities = 69/179 (38%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + +M TI +K + ++R GR + +LD + VE YG+ PLNQVA ++ +PR L Sbjct: 6 KAYDQKMIKTIEVVKANFASVRAGRANAGVLDRIMVEYYGTPTPLNQVAAISSPDPRTLT 65 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V WD ++ ++E+ I S+LG+NP +G+++R+ P+ TEERR L K Y+E+ K+ Sbjct: 66 VQPWDASLLKAIEKAIQTSDLGINPQNDGRLIRLAFPQLTEERRKELTKQVRKYSEEGKV 125 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD MD KK +K+ + +ED + LE ++Q +TD K+ID +K++E+M Sbjct: 126 ALRNIRRDAMDEFKKKKKASEITEDDLKELEKELQDLTDKRCKDIDELTVKKEQELMAV 184 >gi|219362787|ref|NP_001137010.1| hypothetical protein LOC100217177 [Zea mays] gi|194697972|gb|ACF83070.1| unknown [Zea mays] gi|223972995|gb|ACN30685.1| unknown [Zea mays] Length = 266 Score = 234 bits (599), Expect = 3e-60, Method: Composition-based stats. Identities = 69/179 (38%), Positives = 109/179 (60%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 K++M I ++ + T+RTGR SP+MLD ++VE YG+ V L +A ++ + L+ Sbjct: 88 DQAKEKMEKAIETVQTNFNTVRTGRASPAMLDRIEVEYYGTPVNLKSIAQISTPDATSLL 147 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +DK + +E+ I +NLG+ P +G+V+R+ VP T +RR L K AE K+ Sbjct: 148 IQPYDKSSLKLIEKTIVAANLGVTPSNDGEVIRVTVPPLTSDRRKELAKTVAKLAEDGKV 207 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD + K +K K SED V L D+QK+TD +KNIDS ++K++E+M Sbjct: 208 AIRNIRRDAIKAYDKLQKEKKLSEDNVKDLSADLQKVTDEYMKNIDSIQKQKEQELMKI 266 >gi|319793980|ref|YP_004155620.1| ribosome recycling factor [Variovorax paradoxus EPS] gi|315596443|gb|ADU37509.1| ribosome recycling factor [Variovorax paradoxus EPS] Length = 186 Score = 234 bits (599), Expect = 3e-60, Method: Composition-based stats. Identities = 75/184 (40%), Positives = 115/184 (62%), Gaps = 1/184 (0%) Query: 4 VIDLQNIKD-RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLE 62 + D+++ D +M +++ + ++ +RTGR + ++LD + VE YGS VPL+QVANV+VL+ Sbjct: 3 IADIRSATDAKMNQSLAAFQNNLTKIRTGRANSALLDSIHVEYYGSQVPLSQVANVSVLD 62 Query: 63 PRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 R + V W+K M A +E+ I ES+LGLNP G ++R+P+P +EERR + K+ Sbjct: 63 SRTISVQPWEKGMGAKIEKAIRESDLGLNPASMGDLIRVPLPAMSEERRKEMTKLVRNEG 122 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 E +K++ RN+RRD + +KK K ASED E +IQK+TD I ID K+ E Sbjct: 123 ETAKVATRNLRRDANESVKKLVKDKLASEDDQKRAEAEIQKVTDRHIAEIDRLVAAKEAE 182 Query: 183 IMHF 186 IM Sbjct: 183 IMAV 186 >gi|33863513|ref|NP_895073.1| ribosome recycling factor [Prochlorococcus marinus str. MIT 9313] gi|39932089|sp|Q7V6C1|RRF_PROMM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|33640962|emb|CAE21420.1| Ribosome recycling factor [Prochlorococcus marinus str. MIT 9313] Length = 182 Score = 234 bits (599), Expect = 3e-60, Method: Composition-based stats. Identities = 66/179 (36%), Positives = 111/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q +KD M ++ +++ T+RTGR +PS+LD + VE YG+ PL +A ++ + + + Sbjct: 4 QELKDNMHKSVEATQRNFATIRTGRANPSLLDRINVEYYGTETPLKSLATISTPDSQTIA 63 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +D + +E+ I S+LGL P +G+++RI VP TEERR K+A YAE+ K+ Sbjct: 64 IQPFDNGSMGLIEKAIATSDLGLTPNNDGKIIRINVPPLTEERRKEFCKLAARYAEEGKV 123 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD +D +KK K + S+D ++ IQK+TD+ I I+ + EK+ +I+ Sbjct: 124 ALRNIRRDAIDKVKKLEKDAELSKDQSHDEQDGIQKLTDTFITEIEKYLAEKEADILKV 182 >gi|16800419|ref|NP_470687.1| ribosome recycling factor [Listeria innocua Clip11262] gi|22001944|sp|Q92C40|RRF_LISIN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|16413824|emb|CAC96582.1| frr [Listeria innocua Clip11262] Length = 185 Score = 234 bits (599), Expect = 3e-60, Method: Composition-based stats. Identities = 76/180 (42%), Positives = 121/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K++M L + + T+R GR + S+LD + V+ YG+ P+NQ+A+++V E RML Sbjct: 6 LSKSKEKMEKAEQALTRQLGTIRAGRANASLLDRLTVDYYGAATPVNQMASISVPEARML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK ++ +E+ I +S+LGL P +G VLR+ +P+ TEERR LVK AE++K Sbjct: 66 LITPYDKTILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRR+ + LKK K+G +ED + S D+QK+TD +IKNIDS ++K+ EI+ Sbjct: 126 VAVRNIRREANEDLKKLEKNGDITEDDLRSYGEDVQKLTDESIKNIDSITKDKEAEILEV 185 >gi|320159761|ref|YP_004172985.1| ribosome recycling factor [Anaerolinea thermophila UNI-1] gi|319993614|dbj|BAJ62385.1| ribosome recycling factor [Anaerolinea thermophila UNI-1] Length = 185 Score = 234 bits (599), Expect = 3e-60, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 118/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ + RM I L++++ +RTGR SP++++ ++VE YG PL Q+A+++ EPR+L Sbjct: 6 LKEAETRMKGAIQALEENLAGIRTGRASPALVERLQVEYYGVPTPLMQLASISAPEPRVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D + +E+ I S+LGL P +G+V+R+ +P TEERR LVKV HA E+S+ Sbjct: 66 MIRPFDTSSLRLIEKAIMASDLGLTPNNDGKVIRLNIPPLTEERRRELVKVVHARLEESR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I+VRN+RRD + L+ K SED + E ++QK+TD I+ ID+ ++K+KEIM Sbjct: 126 IAVRNVRRDMVKDLRDFEKEKLISEDDLKKGEEELQKLTDRYIQEIDAIGQKKEKEIMEV 185 >gi|332799211|ref|YP_004460710.1| Ribosome-recycling factor [Tepidanaerobacter sp. Re1] gi|332696946|gb|AEE91403.1| Ribosome-recycling factor [Tepidanaerobacter sp. Re1] Length = 185 Score = 234 bits (599), Expect = 3e-60, Method: Composition-based stats. Identities = 74/178 (41%), Positives = 120/178 (67%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 ++++M + + LK + T+R GR S ++LD + V+ YGS P+NQVA+V+V EP+M+++ Sbjct: 8 EMENQMNEVLVNLKSEFTTIRAGRASAALLDKIYVDYYGSPTPVNQVASVSVPEPKMILI 67 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 WD +M+ +E+ I +S+LGL P +G+V+R+ +PE T ERR LVK++ AE++K+S Sbjct: 68 QPWDLKMLGVIEKAILKSDLGLTPNNDGKVIRLILPELTAERRQELVKLSKKKAEEAKVS 127 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +RNIRR+ D LKK K+ + SED + + +IQKITD I ++ K+K+IM Sbjct: 128 IRNIRREYNDVLKKMEKNREISEDDLKRSQEEIQKITDKYIDEVEKILANKEKDIMEV 185 >gi|29376892|ref|NP_816046.1| ribosome recycling factor [Enterococcus faecalis V583] gi|227519884|ref|ZP_03949933.1| ribosome recycling factor [Enterococcus faecalis TX0104] gi|227553929|ref|ZP_03983976.1| ribosome recycling factor [Enterococcus faecalis HH22] gi|229549430|ref|ZP_04438155.1| ribosome recycling factor [Enterococcus faecalis ATCC 29200] gi|255972134|ref|ZP_05422720.1| ribosome recycling factor [Enterococcus faecalis T1] gi|255975201|ref|ZP_05425787.1| ribosome recycling factor [Enterococcus faecalis T2] gi|256617047|ref|ZP_05473893.1| ribosome recycling factor [Enterococcus faecalis ATCC 4200] gi|256763091|ref|ZP_05503671.1| ribosome recycling factor [Enterococcus faecalis T3] gi|256853758|ref|ZP_05559123.1| ribosome recycling factor [Enterococcus faecalis T8] gi|256956675|ref|ZP_05560846.1| ribosome recycling factor [Enterococcus faecalis DS5] gi|256961308|ref|ZP_05565479.1| ribosome recycling factor [Enterococcus faecalis Merz96] gi|256963564|ref|ZP_05567735.1| ribosome recycling factor [Enterococcus faecalis HIP11704] gi|257079630|ref|ZP_05573991.1| ribosome recycling factor [Enterococcus faecalis JH1] gi|257087429|ref|ZP_05581790.1| ribosome recycling factor [Enterococcus faecalis D6] gi|257090589|ref|ZP_05584950.1| ribosome recycling factor [Enterococcus faecalis CH188] gi|257416636|ref|ZP_05593630.1| ribosome recycling factor [Enterococcus faecalis AR01/DG] gi|257419852|ref|ZP_05596846.1| ribosome recycling factor [Enterococcus faecalis T11] gi|257421959|ref|ZP_05598949.1| ribosome recycling factor [Enterococcus faecalis X98] gi|293383593|ref|ZP_06629503.1| ribosome recycling factor [Enterococcus faecalis R712] gi|293387294|ref|ZP_06631851.1| ribosome recycling factor [Enterococcus faecalis S613] gi|294780910|ref|ZP_06746264.1| ribosome recycling factor [Enterococcus faecalis PC1.1] gi|300861008|ref|ZP_07107095.1| ribosome recycling factor [Enterococcus faecalis TUSoD Ef11] gi|307270847|ref|ZP_07552134.1| ribosome recycling factor [Enterococcus faecalis TX4248] gi|307271503|ref|ZP_07552775.1| ribosome recycling factor [Enterococcus faecalis TX0855] gi|307277169|ref|ZP_07558273.1| ribosome recycling factor [Enterococcus faecalis TX2134] gi|307285820|ref|ZP_07565954.1| ribosome recycling factor [Enterococcus faecalis TX0860] gi|307290551|ref|ZP_07570463.1| ribosome recycling factor [Enterococcus faecalis TX0411] gi|312899827|ref|ZP_07759146.1| ribosome recycling factor [Enterococcus faecalis TX0470] gi|312905119|ref|ZP_07764240.1| ribosome recycling factor [Enterococcus faecalis TX0635] gi|312906143|ref|ZP_07765155.1| ribosome recycling factor [Enterococcus faecalis DAPTO 512] gi|312909488|ref|ZP_07768343.1| ribosome recycling factor [Enterococcus faecalis DAPTO 516] gi|312953477|ref|ZP_07772317.1| ribosome recycling factor [Enterococcus faecalis TX0102] gi|34924912|sp|Q831V2|RRF_ENTFA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|29344357|gb|AAO82116.1| ribosome recycling factor [Enterococcus faecalis V583] gi|227072678|gb|EEI10641.1| ribosome recycling factor [Enterococcus faecalis TX0104] gi|227176915|gb|EEI57887.1| ribosome recycling factor [Enterococcus faecalis HH22] gi|229305667|gb|EEN71663.1| ribosome recycling factor [Enterococcus faecalis ATCC 29200] gi|255963152|gb|EET95628.1| ribosome recycling factor [Enterococcus faecalis T1] gi|255968073|gb|EET98695.1| ribosome recycling factor [Enterococcus faecalis T2] gi|256596574|gb|EEU15750.1| ribosome recycling factor [Enterococcus faecalis ATCC 4200] gi|256684342|gb|EEU24037.1| ribosome recycling factor [Enterococcus faecalis T3] gi|256710701|gb|EEU25744.1| ribosome recycling factor [Enterococcus faecalis T8] gi|256947171|gb|EEU63803.1| ribosome recycling factor [Enterococcus faecalis DS5] gi|256951804|gb|EEU68436.1| ribosome recycling factor [Enterococcus faecalis Merz96] gi|256954060|gb|EEU70692.1| ribosome recycling factor [Enterococcus faecalis HIP11704] gi|256987660|gb|EEU74962.1| ribosome recycling factor [Enterococcus faecalis JH1] gi|256995459|gb|EEU82761.1| ribosome recycling factor [Enterococcus faecalis D6] gi|256999401|gb|EEU85921.1| ribosome recycling factor [Enterococcus faecalis CH188] gi|257158464|gb|EEU88424.1| ribosome recycling factor [Enterococcus faecalis ARO1/DG] gi|257161680|gb|EEU91640.1| ribosome recycling factor [Enterococcus faecalis T11] gi|257163783|gb|EEU93743.1| ribosome recycling factor [Enterococcus faecalis X98] gi|291079105|gb|EFE16469.1| ribosome recycling factor [Enterococcus faecalis R712] gi|291083331|gb|EFE20294.1| ribosome recycling factor [Enterococcus faecalis S613] gi|294452036|gb|EFG20484.1| ribosome recycling factor [Enterococcus faecalis PC1.1] gi|295113452|emb|CBL32089.1| ribosome recycling factor [Enterococcus sp. 7L76] gi|300850047|gb|EFK77797.1| ribosome recycling factor [Enterococcus faecalis TUSoD Ef11] gi|306498406|gb|EFM67911.1| ribosome recycling factor [Enterococcus faecalis TX0411] gi|306502581|gb|EFM71848.1| ribosome recycling factor [Enterococcus faecalis TX0860] gi|306506099|gb|EFM75265.1| ribosome recycling factor [Enterococcus faecalis TX2134] gi|306511775|gb|EFM80773.1| ribosome recycling factor [Enterococcus faecalis TX0855] gi|306512760|gb|EFM81405.1| ribosome recycling factor [Enterococcus faecalis TX4248] gi|310627789|gb|EFQ11072.1| ribosome recycling factor [Enterococcus faecalis DAPTO 512] gi|310628686|gb|EFQ11969.1| ribosome recycling factor [Enterococcus faecalis TX0102] gi|310631509|gb|EFQ14792.1| ribosome recycling factor [Enterococcus faecalis TX0635] gi|311290161|gb|EFQ68717.1| ribosome recycling factor [Enterococcus faecalis DAPTO 516] gi|311293077|gb|EFQ71633.1| ribosome recycling factor [Enterococcus faecalis TX0470] gi|315025416|gb|EFT37348.1| ribosome recycling factor [Enterococcus faecalis TX2137] gi|315030225|gb|EFT42157.1| ribosome recycling factor [Enterococcus faecalis TX4000] gi|315032889|gb|EFT44821.1| ribosome recycling factor [Enterococcus faecalis TX0017] gi|315035626|gb|EFT47558.1| ribosome recycling factor [Enterococcus faecalis TX0027] gi|315146673|gb|EFT90689.1| ribosome recycling factor [Enterococcus faecalis TX4244] gi|315150163|gb|EFT94179.1| ribosome recycling factor [Enterococcus faecalis TX0012] gi|315152144|gb|EFT96160.1| ribosome recycling factor [Enterococcus faecalis TX0031] gi|315155331|gb|EFT99347.1| ribosome recycling factor [Enterococcus faecalis TX0043] gi|315159093|gb|EFU03110.1| ribosome recycling factor [Enterococcus faecalis TX0312] gi|315161686|gb|EFU05703.1| ribosome recycling factor [Enterococcus faecalis TX0645] gi|315166409|gb|EFU10426.1| ribosome recycling factor [Enterococcus faecalis TX1341] gi|315170306|gb|EFU14323.1| ribosome recycling factor [Enterococcus faecalis TX1342] gi|315173660|gb|EFU17677.1| ribosome recycling factor [Enterococcus faecalis TX1346] gi|315574370|gb|EFU86561.1| ribosome recycling factor [Enterococcus faecalis TX0309B] gi|315579052|gb|EFU91243.1| ribosome recycling factor [Enterococcus faecalis TX0630] gi|315580155|gb|EFU92346.1| ribosome recycling factor [Enterococcus faecalis TX0309A] gi|323481387|gb|ADX80826.1| ribosome recycling factor [Enterococcus faecalis 62] gi|327535683|gb|AEA94517.1| ribosome recycling factor [Enterococcus faecalis OG1RF] gi|329572247|gb|EGG53907.1| ribosome recycling factor [Enterococcus faecalis TX1467] Length = 185 Score = 234 bits (599), Expect = 3e-60, Method: Composition-based stats. Identities = 74/180 (41%), Positives = 124/180 (68%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K++M L++++ +R GR + S+LD ++VE YG+ P+NQ+A++ + E R+L Sbjct: 6 LATAKEKMTKAEESLRRELGQIRAGRANASLLDRIQVEYYGAPTPVNQLASINIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK +A +E+ I S++G++P +G V+R+ +P+ TEERR L K AE SK Sbjct: 66 MITPFDKNSIADIEKAIQMSDIGISPTNDGNVIRLVIPQLTEERRKELAKDVKKEAENSK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RRD MD LKK++K+G +ED + S E D+QK+TD +IKNID+ EK++E++ Sbjct: 126 VAVRNVRRDAMDELKKAQKNGDITEDELRSFEKDVQKLTDDSIKNIDAITAEKEQELLEV 185 >gi|261856047|ref|YP_003263330.1| ribosome recycling factor [Halothiobacillus neapolitanus c2] gi|261836516|gb|ACX96283.1| ribosome recycling factor [Halothiobacillus neapolitanus c2] Length = 185 Score = 234 bits (599), Expect = 3e-60, Method: Composition-based stats. Identities = 78/179 (43%), Positives = 109/179 (60%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ RM +I LK ++ +RTGR S+LD V V+ YGS VPL+QVA ++ + R L Sbjct: 7 KDCDVRMHKSIDALKVELSKIRTGRAHVSILDHVSVDYYGSMVPLSQVAKLSAEDSRTLS 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+ W+KEMV +E+ I S+LGLNP G V+R+P+P TEERR L KV E +K+ Sbjct: 67 VTPWEKEMVGKIEKAIMTSDLGLNPSTSGLVIRVPMPALTEERRKELGKVVRTEGENAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD + LK K SED ++ IQK+TD + ID EK+KE++ Sbjct: 127 AVRNIRRDANNDLKNMLKDKDISEDDERRGQDLIQKLTDQCVTEIDKLVAEKEKELLEV 185 >gi|313623929|gb|EFR94035.1| ribosome recycling factor [Listeria innocua FSL J1-023] Length = 185 Score = 234 bits (599), Expect = 4e-60, Method: Composition-based stats. Identities = 76/180 (42%), Positives = 121/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K++M L + + T+R GR + S+LD + V+ YG+ P+NQ+A+++V E RML Sbjct: 6 LSKSKEKMEKAEQALTRQLGTIRAGRANASLLDRLTVDYYGAATPVNQMASISVPEARML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK ++ +E+ I +S+LGL P +G VLR+ +P+ TEERR LVK AE++K Sbjct: 66 LITPYDKTILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRR+ + LKK K+G +ED + S D+QK+TD +IKNIDS ++K+ EI+ Sbjct: 126 VAVRNIRREANEELKKLEKNGDITEDDLRSYGEDVQKLTDESIKNIDSITKDKEAEILEV 185 >gi|126462131|ref|YP_001043245.1| ribosome recycling factor [Rhodobacter sphaeroides ATCC 17029] gi|221639121|ref|YP_002525383.1| ribosome recycling factor [Rhodobacter sphaeroides KD131] gi|332558135|ref|ZP_08412457.1| ribosome recycling factor [Rhodobacter sphaeroides WS8N] gi|190360247|sp|A3PJF7|RRF_RHOS1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|254809527|sp|B9KRU0|RRF_RHOSK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|126103795|gb|ABN76473.1| ribosome recycling factor [Rhodobacter sphaeroides ATCC 17029] gi|221159902|gb|ACM00882.1| Ribosome recycling factor [Rhodobacter sphaeroides KD131] gi|332275847|gb|EGJ21162.1| ribosome recycling factor [Rhodobacter sphaeroides WS8N] Length = 188 Score = 234 bits (599), Expect = 4e-60, Method: Composition-based stats. Identities = 84/182 (46%), Positives = 127/182 (69%), Gaps = 1/182 (0%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 IDL I+ RM + L+ + +LRTGR S S+L+ + V+AYG PLNQ+ + V EPR Sbjct: 8 IDLDAIQRRMDGAMHALRTEFGSLRTGRASASILEPIHVDAYGQQTPLNQLGTINVPEPR 67 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+V++VWDK M++ VER I +S +G+NP+V+G ++R+P+PE EERR L KVA YAE+ Sbjct: 68 MVVINVWDKGMISKVERAIRDSGIGINPVVDGPIIRLPIPELNEERRKELSKVAAHYAEQ 127 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++++RN+RRDGMD +KK++ +G +ED +++Q +TD I +D EEK+KEIM Sbjct: 128 ARVAIRNVRRDGMDQIKKAKSAG-MAEDDQKMWSDEVQALTDKAIAAVDKALEEKQKEIM 186 Query: 185 HF 186 Sbjct: 187 QV 188 >gi|56478854|ref|YP_160443.1| ribosome recycling factor [Aromatoleum aromaticum EbN1] gi|60390230|sp|Q5NZH2|RRF_AZOSE RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|56314897|emb|CAI09542.1| ribosome recycling factor [Aromatoleum aromaticum EbN1] Length = 185 Score = 234 bits (598), Expect = 4e-60, Method: Composition-based stats. Identities = 78/179 (43%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + + +M +I LK D+ +RTGR +LD V VE YGS VP++QV+NVT+++ R + Sbjct: 7 KTTEQKMQKSIDVLKADLAKVRTGRAHTGLLDHVMVEYYGSMVPISQVSNVTLIDARTIG 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V VW+K M+ VER I +S+LGLNP +G ++R+P+P TEERR L KV E +K+ Sbjct: 67 VQVWEKPMMQKVERAIRDSDLGLNPANQGDIIRVPMPALTEERRRDLTKVVRHEGEAAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD HLK + K SED + DIQK+TD I ID +K++E+M Sbjct: 127 AIRNLRRDANQHLKDAVKDKTISEDDDRRAQEDIQKLTDRNIAEIDKLLAQKEQELMQL 185 >gi|289662904|ref|ZP_06484485.1| ribosome recycling factor [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289670225|ref|ZP_06491300.1| ribosome recycling factor [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 185 Score = 234 bits (598), Expect = 4e-60, Method: Composition-based stats. Identities = 81/179 (45%), Positives = 118/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ + RM +I L+ + T+RTGR SP++LD +KV+AYG+ PLNQVA+++V E R LV Sbjct: 7 QDAQTRMTKSIDALRHSLTTVRTGRASPALLDGIKVKAYGTDTPLNQVASISVSEGRSLV 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S++DK M+ VE+ I+ S+LGL P V G V+R+ +P TEERR L K H E SK+ Sbjct: 67 ISLFDKGMIKDVEKAIYASDLGLTPTVVGTVIRLNLPPLTEERRKELSKSVHGEGEDSKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD +K K +ED E+DIQK+TD IK++D + K++E+M Sbjct: 127 AIRNIRRDANQQVKDLLKDKAVTEDEARGAEDDIQKLTDKAIKDVDEVVKAKEQELMTV 185 >gi|259046749|ref|ZP_05737150.1| ribosome recycling factor [Granulicatella adiacens ATCC 49175] gi|259036645|gb|EEW37900.1| ribosome recycling factor [Granulicatella adiacens ATCC 49175] Length = 186 Score = 234 bits (598), Expect = 4e-60, Method: Composition-based stats. Identities = 77/186 (41%), Positives = 125/186 (67%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ L + K+RM + L++++ ++R GR + S+LD ++VE YG+ P+NQ+A++TV Sbjct: 1 MSTSEILAHTKERMKKSEDALQRELGSIRAGRANASLLDRLEVEYYGALTPVNQLASITV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E RML+++ +DK + +ER I S++G+ P +G V+R+ +P+ TEERR L K Sbjct: 61 PEARMLLITPYDKSSLNDIERAILMSDIGITPTSDGSVIRLIIPQLTEERRKELAKQVGK 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE +K+SVRNIRRD +D KK+ K+ + +ED + +LE DIQK+TD ++KNID K+ Sbjct: 121 EAENAKVSVRNIRRDAIDQAKKAEKAKEITEDELHTLEKDIQKVTDDSVKNIDKLAATKE 180 Query: 181 KEIMHF 186 KE++ Sbjct: 181 KELLEV 186 >gi|88807685|ref|ZP_01123197.1| ribosome releasing factor [Synechococcus sp. WH 7805] gi|88788899|gb|EAR20054.1| ribosome releasing factor [Synechococcus sp. WH 7805] Length = 182 Score = 234 bits (598), Expect = 4e-60, Method: Composition-based stats. Identities = 62/179 (34%), Positives = 107/179 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +++ M ++ +++ T+RTGR + S+LD + VE YG+ PL +A ++ + + + Sbjct: 4 SDLESSMRKSVEATQRNFNTIRTGRANSSLLDRISVEYYGADTPLKSLATLSTPDSQTIQ 63 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +D +AS+E+ I S LG P +G+V+RI VP TEERR K+A YAE+ K+ Sbjct: 64 IQPFDISALASIEKAIAMSELGFTPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGKV 123 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD +D +KK K G SED +++IQK+T+ I ++ K+ +I+ Sbjct: 124 ALRNLRRDAIDKIKKQEKDGDLSEDQSRDQQDEIQKLTNQFIAELEKHLATKEADILKV 182 >gi|319441376|ref|ZP_07990532.1| ribosome recycling factor [Corynebacterium variabile DSM 44702] Length = 185 Score = 234 bits (598), Expect = 4e-60, Method: Composition-based stats. Identities = 77/180 (42%), Positives = 116/180 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +D M ++ +++D+ T+RTGR +P+M + V E YG P+ Q+A ++V EPRML Sbjct: 6 LLDAEDHMSRSVDHVREDLTTIRTGRANPAMFNRVFAEYYGMRTPITQMATISVPEPRML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ ++ ++ +E I S+LG+NP +GQVLR+ +P+ TEERR LVKVA E +K Sbjct: 66 IIKPYEMSVMQEIENAIRNSDLGVNPTNDGQVLRVTIPQLTEERRKDLVKVARGKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 IS+RNIRR GMD LKK +K G A ED V + E ++ KIT + +D K+KE+M Sbjct: 126 ISIRNIRRKGMDSLKKIQKDGDAGEDEVQAAEKELDKITQGYVAQVDEVVSSKEKELMEV 185 >gi|294666399|ref|ZP_06731645.1| ribosome releasing factor [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603841|gb|EFF47246.1| ribosome releasing factor [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 185 Score = 234 bits (598), Expect = 4e-60, Method: Composition-based stats. Identities = 83/179 (46%), Positives = 119/179 (66%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ + RM +I L+ + T+RTGR SP++LD +KV+AYG+ PLNQVA+++V E R LV Sbjct: 7 QDAQTRMTKSIDALRHSLTTIRTGRASPALLDGIKVKAYGADTPLNQVASISVSEGRSLV 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S++DK M+ VE+ I+ S+LGL P V G V+R+ +P TEERR L K H E SK+ Sbjct: 67 ISLFDKGMIKDVEKAIYASDLGLTPTVVGTVIRLNLPPLTEERRKELSKSVHGEGEDSKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD +K K +ED S E+DIQK+TD IKN+D + K++E+M Sbjct: 127 AIRNIRRDANQQVKDLLKDKAVTEDEARSAEDDIQKLTDKAIKNVDEVVKGKEQELMTV 185 >gi|258653276|ref|YP_003202432.1| ribosome recycling factor [Nakamurella multipartita DSM 44233] gi|258556501|gb|ACV79443.1| ribosome recycling factor [Nakamurella multipartita DSM 44233] Length = 185 Score = 234 bits (598), Expect = 4e-60, Method: Composition-based stats. Identities = 66/181 (36%), Positives = 109/181 (60%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 +L + +++M +S K D+ TLRTGR +P+M ++V+ YG+ P+ Q+A + + E RM Sbjct: 5 ELFDAEEKMEKAVSVAKDDLATLRTGRANPNMFGRIQVDYYGAPTPITQMAAINIPEARM 64 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 V+ +D + +VE+ I +S+LG+NP +G V+R+ P+ TE+RR L K A + E + Sbjct: 65 AVIKPYDSSQLHAVEKAIRDSDLGVNPTTDGIVIRVVFPQLTEQRRRELGKTARSKGEDA 124 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 K+S+RNIRR L K K G+ ED V E ++Q+ITD +D + K+ E++ Sbjct: 125 KVSIRNIRRKCTQVLDKLVKDGEVGEDDVTRAEKELQQITDRYTSQVDEMVKHKEAELLE 184 Query: 186 F 186 Sbjct: 185 V 185 >gi|21242171|ref|NP_641753.1| ribosome recycling factor [Xanthomonas axonopodis pv. citri str. 306] gi|78047031|ref|YP_363206.1| ribosome recycling factor [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325929597|ref|ZP_08190711.1| ribosome recycling factor [Xanthomonas perforans 91-118] gi|24418656|sp|Q8PMK8|RRF_XANAC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|123585494|sp|Q3BVK7|RRF_XANC5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|21107587|gb|AAM36289.1| ribosome recycling factor [Xanthomonas axonopodis pv. citri str. 306] gi|78035461|emb|CAJ23106.1| ribosome recycling factor [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325540107|gb|EGD11735.1| ribosome recycling factor [Xanthomonas perforans 91-118] Length = 185 Score = 234 bits (598), Expect = 4e-60, Method: Composition-based stats. Identities = 82/179 (45%), Positives = 119/179 (66%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ + RM +I L+ + T+RTGR SP++LD +KV+AYG+ PLNQVA+++V E R LV Sbjct: 7 QDAQTRMTKSIDALRHSLTTIRTGRASPALLDGIKVKAYGADTPLNQVASISVSEGRSLV 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S++DK M+ VE+ I+ S+LGL P V G V+R+ +P TEERR L K H E SK+ Sbjct: 67 ISLFDKGMIKDVEKAIYASDLGLTPTVVGTVIRLNLPPLTEERRKELSKSVHGEGEDSKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD +K K +ED S E+DIQK+TD IK++D + K++E+M Sbjct: 127 AIRNIRRDANQQVKDLLKDKAVTEDEARSAEDDIQKLTDKAIKDVDEVVKGKEQELMTV 185 >gi|323142320|ref|ZP_08077152.1| ribosome recycling factor [Phascolarctobacterium sp. YIT 12067] gi|322413204|gb|EFY04091.1| ribosome recycling factor [Phascolarctobacterium sp. YIT 12067] Length = 187 Score = 234 bits (598), Expect = 4e-60, Method: Composition-based stats. Identities = 78/185 (42%), Positives = 123/185 (66%), Gaps = 2/185 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 N++I I+ +M +++ L+ D+ +LR GR +PS+L+ V V+ YGS P+ QVA+VTV Sbjct: 5 NEII--SGIESKMEKSVAALRVDLASLRAGRATPSLLEKVMVDYYGSPTPVTQVASVTVP 62 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 EPRM+V+ W+K ++ +E+ I +S+LGLNP +G +R+ +P+ TEERR LVKV H Sbjct: 63 EPRMIVIQPWEKNILKDIEKAIMKSDLGLNPNSDGICIRLNLPQLTEERRKDLVKVVHKK 122 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 AE+ ++ VRN+RRD D +KK+ K+ + +ED +QK+TD +K ID+ K+K Sbjct: 123 AEEYRVVVRNLRRDANDAIKKTEKAKEITEDEAKKGTEKVQKLTDKVMKEIDAAAANKEK 182 Query: 182 EIMHF 186 E+M Sbjct: 183 EVMEV 187 >gi|219127660|ref|XP_002184049.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217404280|gb|EEC44227.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 225 Score = 234 bits (598), Expect = 4e-60, Method: Composition-based stats. Identities = 68/179 (37%), Positives = 111/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + DRM ++ ++ ++ ++RTGR S +LD VKV+ YG PLNQ+A ++V + L Sbjct: 47 DDASDRMAKSVDSVRLNLQSVRTGRASAQILDRVKVDYYGVETPLNQMATISVPSAQQLS 106 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +DK + ++E I ES+LGL +G ++RI +P TE+RR ++K+ + E+ K+ Sbjct: 107 IDPYDKTSLNNIETAIVESDLGLTTNNDGSIIRINIPSMTEDRRKEMLKLCKSIGEEGKV 166 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRDG+D +KK KS ED + ++ +QK+TD +K ID K+KE+M Sbjct: 167 AVRNIRRDGLDTIKKMEKSSDIGEDEMKDGQDTMQKLTDKNVKEIDEVVGAKEKEVMKV 225 >gi|119513540|ref|ZP_01632559.1| ribosome releasing factor [Nodularia spumigena CCY9414] gi|119461805|gb|EAW42823.1| ribosome releasing factor [Nodularia spumigena CCY9414] Length = 182 Score = 234 bits (598), Expect = 4e-60, Method: Composition-based stats. Identities = 63/177 (35%), Positives = 105/177 (59%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + M T+ ++ T+RTGR + S+LD V V+ YGS PL +AN++ + + Sbjct: 3 LSEAESTMQKTVEATQRAFNTIRTGRANASLLDKVSVDYYGSPTPLKSLANISTPDASTI 62 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +DK + VE+ I S++GL P +G V+R+ +P T +RR VK+A YAE+ + Sbjct: 63 LIQPYDKGSLNVVEKAISLSDVGLTPSNDGSVIRLNIPPLTSDRRKEFVKMASKYAEEGR 122 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +++RNIRRD D ++K K+ + SED ++ +QK+T+ ID EK+K+I Sbjct: 123 VAIRNIRRDVQDTIRKEEKASEISEDESKDQQDQLQKLTNKYTARIDDLLAEKEKDI 179 >gi|160900377|ref|YP_001565959.1| ribosome recycling factor [Delftia acidovorans SPH-1] gi|238687160|sp|A9BMM9|RRF_DELAS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|160365961|gb|ABX37574.1| ribosome recycling factor [Delftia acidovorans SPH-1] Length = 186 Score = 234 bits (598), Expect = 4e-60, Method: Composition-based stats. Identities = 81/179 (45%), Positives = 117/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + + +MG +I LK ++ +RTGR +PS+LD + V+ YGS VPL+QVANV +L+ R + Sbjct: 8 KTTESKMGQSIEALKNNLARVRTGRANPSLLDSIHVDYYGSMVPLSQVANVNLLDARTIS 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K M A VE+ I ES+LGLNP G ++R+P+P +EERR + K+A E SKI Sbjct: 68 VQPWEKSMSAKVEKAIRESDLGLNPASLGDLIRVPMPPMSEERRKEMTKLARNEGEASKI 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD + +KK K +ASED E D+QK+TD I ID+ K+++IM Sbjct: 128 AVRNLRRDANEAVKKLVKDKEASEDDQKRCEADVQKMTDKHITEIDALVAAKEQDIMAV 186 >gi|169630269|ref|YP_001703918.1| ribosome recycling factor [Mycobacterium abscessus ATCC 19977] gi|238688906|sp|B1MDE3|RRF_MYCA9 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|169242236|emb|CAM63264.1| Ribosome recycling factor (Ribosome-releasing factor [Mycobacterium abscessus] Length = 185 Score = 234 bits (598), Expect = 4e-60, Method: Composition-based stats. Identities = 65/180 (36%), Positives = 106/180 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++M ++ + D T+RTGR +P M V ++ YG+ P+ QVA + V E RM+ Sbjct: 6 LLDAEEKMEKAVTVARDDFATIRTGRANPGMFQRVVIDYYGTPTPITQVAGINVPEARMV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ ++ + ++E I S+LGLNP +G ++R+ +P+ TEERR LVK A E +K Sbjct: 66 VIKPYESNQLKAIEDAIRNSDLGLNPSNDGSIIRVAIPQLTEERRRELVKQAKGKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRR D L + +K G+A ED V E D+ K T + ID + K+ E++ Sbjct: 126 VTLRNIRRKANDELNRIKKDGEAGEDEVGRAEKDLDKTTAQYVSQIDELVKHKEGELLEV 185 >gi|294624553|ref|ZP_06703230.1| ribosome releasing factor [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292601159|gb|EFF45219.1| ribosome releasing factor [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 185 Score = 234 bits (598), Expect = 4e-60, Method: Composition-based stats. Identities = 81/179 (45%), Positives = 118/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ + RM +I L+ + T+RTGR SP++LD +KV+AYG+ PLNQVA+++V E R LV Sbjct: 7 QDAQTRMTKSIDALRHSLTTIRTGRASPALLDGIKVKAYGADTPLNQVASISVSEGRSLV 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S++DK M+ VE+ I+ S+LGL P V G V+R+ +P TEERR L K H E SK+ Sbjct: 67 ISLFDKGMIKDVEKAIYASDLGLTPTVVGTVIRLNLPPLTEERRKELSKSVHGEGEDSKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD +K K +ED E+DIQK+TD IK++D + K++E+M Sbjct: 127 AIRNIRRDANQQVKDLLKDKAVTEDEARGAEDDIQKLTDKAIKDVDEVVKGKEQELMTV 185 >gi|94986827|ref|YP_594760.1| ribosome recycling factor [Lawsonia intracellularis PHE/MN1-00] gi|190360249|sp|Q1MRD7|RRF_LAWIP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|94731076|emb|CAJ54439.1| Ribosome recycling factor [Lawsonia intracellularis PHE/MN1-00] Length = 188 Score = 234 bits (598), Expect = 4e-60, Method: Composition-based stats. Identities = 72/180 (40%), Positives = 116/180 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + ++RM I+ L+K+ LRTGR S S++D +KV+ YG+ P+NQ+A++ + + + Sbjct: 9 FLDSQERMVKAITSLEKEFTKLRTGRASTSIVDTIKVDYYGTPTPINQLASIAIPDSSSI 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK +E+ I +S LGL PI +G+++RI +P TE+RR LVK+A Y E +K Sbjct: 69 TIQPWDKTAFNPIEKAILKSELGLTPINDGKIIRITLPPLTEDRRKDLVKLARKYGEDTK 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIRRD + LK+ K+ SED + DIQK+TD+ IK +++ + K+KEI+ Sbjct: 129 IAIRNIRRDANEQLKRLEKNKFISEDELKGFTEDIQKMTDNYIKEVETHCKTKEKEIIEI 188 >gi|21230827|ref|NP_636744.1| ribosome recycling factor [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769174|ref|YP_243936.1| ribosome recycling factor [Xanthomonas campestris pv. campestris str. 8004] gi|188992321|ref|YP_001904331.1| ribosome recycling factor [Xanthomonas campestris pv. campestris str. B100] gi|24418655|sp|Q8PAV6|RRF_XANCP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|81304866|sp|Q4USQ7|RRF_XANC8 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|229890170|sp|B0RW69|RRF_XANCB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|21112430|gb|AAM40668.1| ribosome recycling factor [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574506|gb|AAY49916.1| ribosome recycling factor [Xanthomonas campestris pv. campestris str. 8004] gi|167734081|emb|CAP52287.1| unnamed protein product [Xanthomonas campestris pv. campestris] Length = 185 Score = 234 bits (598), Expect = 4e-60, Method: Composition-based stats. Identities = 80/179 (44%), Positives = 119/179 (66%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ + RM +I L+ + T+RTGR SP++LD +KV+AYG+ PLNQVA+++V E R LV Sbjct: 7 QDAQTRMTKSIDALRHSLTTVRTGRASPALLDNIKVKAYGTDTPLNQVASISVSEGRSLV 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S++DK M+ VE+ I+ S+LGL P V G V+R+ +P TEERR L K H E +K+ Sbjct: 67 ISLFDKGMIKDVEKAIYASDLGLTPTVVGTVIRLNLPPLTEERRKELSKSVHGEGEDAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD +K K + +ED E+DIQK+TD IK++D + K++E+M Sbjct: 127 AIRNIRRDANQQVKDLLKDKQVTEDEARGAEDDIQKLTDKAIKDVDEVVKGKEQELMTV 185 >gi|329724306|gb|EGG60818.1| ribosome recycling factor [Staphylococcus epidermidis VCU144] Length = 184 Score = 234 bits (598), Expect = 4e-60, Method: Composition-based stats. Identities = 79/186 (42%), Positives = 121/186 (65%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ +I ++ K RM +I L +++ + GR + ++L+ V V+ YG+ P+ Q+A++ V Sbjct: 1 MSDII--KDTKSRMQKSIDNLSRELANISAGRANSNLLNGVTVDYYGAPTPVQQLASINV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R+LV+S +DK VA +E+ I +NLG+NP +G+V+RI VP TEERR LVK Sbjct: 59 PEARLLVISPYDKTSVADIEKAIIAANLGVNPTSDGEVIRISVPALTEERRKELVKEVKK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E +K+S+RNIRRD D LKK K+G +ED + S +D+QK TD++IK ID +K+ Sbjct: 119 IGEDAKVSIRNIRRDINDQLKKDEKNGDITEDDLRSQTDDVQKATDNSIKEIDQLVTDKE 178 Query: 181 KEIMHF 186 K+IM Sbjct: 179 KDIMSV 184 >gi|239636263|ref|ZP_04677265.1| ribosome recycling factor [Staphylococcus warneri L37603] gi|239597618|gb|EEQ80113.1| ribosome recycling factor [Staphylococcus warneri L37603] gi|330685682|gb|EGG97323.1| ribosome recycling factor [Staphylococcus epidermidis VCU121] Length = 184 Score = 234 bits (598), Expect = 4e-60, Method: Composition-based stats. Identities = 79/186 (42%), Positives = 123/186 (66%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ +I ++ + RM +I L K++ + GR + ++L+ V V+ YG+ P+ Q+A++ V Sbjct: 1 MSDII--KDTRARMQKSIDNLSKELANISAGRANSNLLNGVNVDYYGAPTPVQQLASINV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R+LV+S +DK VA +E+ I+ +NLG+NP +G+V+RI VP TEERR LVK Sbjct: 59 PEARLLVISPYDKSSVADIEKAINAANLGVNPTSDGEVIRISVPALTEERRKELVKDVKK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E +K+S+RNIRRD D LKK K+G +ED + S +D+QK TD++IK ID ++K+ Sbjct: 119 IGEDAKVSIRNIRRDVNDQLKKDEKNGDITEDDLRSQTDDVQKATDNSIKEIDQLVDDKE 178 Query: 181 KEIMHF 186 K+IM Sbjct: 179 KDIMSV 184 >gi|161567479|ref|YP_321148.2| ribosome recycling factor [Anabaena variabilis ATCC 29413] Length = 187 Score = 234 bits (598), Expect = 4e-60, Method: Composition-based stats. Identities = 62/180 (34%), Positives = 108/180 (60%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 ++ L + +M T+ ++ T+RTGR + S+LD V V+ YGS PL +AN++ + Sbjct: 5 LVKLAEAESKMQHTVEATQRAFNTIRTGRANASLLDKVLVDYYGSPTPLKSLANISTPDA 64 Query: 64 RMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAE 123 + + +DK + +E+ I S++GL P +G +R+ +P T +RR LVK+A YAE Sbjct: 65 TTIQIQPYDKTSLNIIEKAISLSDVGLTPSNDGSAIRLNIPPLTSDRRKELVKLAAKYAE 124 Query: 124 KSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 + ++++RNIRRD +D ++K K+ + SED ++ +QK+T+ ID EK+K+I Sbjct: 125 EGRVAIRNIRRDAIDSIRKQEKNAEVSEDEAKDQQDKLQKLTNKYTARIDELLAEKEKDI 184 >gi|257082024|ref|ZP_05576385.1| ribosome recycling factor [Enterococcus faecalis E1Sol] gi|256990054|gb|EEU77356.1| ribosome recycling factor [Enterococcus faecalis E1Sol] Length = 185 Score = 234 bits (598), Expect = 4e-60, Method: Composition-based stats. Identities = 74/180 (41%), Positives = 124/180 (68%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K++M L++++ +R GR + S+LD ++VE YG+ P+NQ+A++ + E R+L Sbjct: 6 LATAKEKMTKAEEGLRRELGQIRAGRANASLLDRIQVEYYGAPTPVNQLASINIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK +A +E+ I S++G++P +G V+R+ +P+ TEERR L K AE SK Sbjct: 66 MITPFDKNSIADIEKAIQMSDIGISPTNDGNVIRLVIPQLTEERRKELAKDVKKEAENSK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RRD MD LKK++K+G +ED + S E D+QK+TD +IKNID+ EK++E++ Sbjct: 126 VAVRNVRRDAMDELKKAQKNGDITEDELRSFEKDVQKLTDDSIKNIDAITAEKEQELLEV 185 >gi|120403212|ref|YP_953041.1| ribosome recycling factor [Mycobacterium vanbaalenii PYR-1] gi|166230806|sp|A1T785|RRF_MYCVP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|119956030|gb|ABM13035.1| ribosome recycling factor [Mycobacterium vanbaalenii PYR-1] Length = 185 Score = 234 bits (598), Expect = 4e-60, Method: Composition-based stats. Identities = 65/180 (36%), Positives = 108/180 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++M ++ + D+ ++RTGR +P M + + V+ YG+ P+ Q++++ V E RM+ Sbjct: 6 LFDAEEKMEKAVAVARDDLASIRTGRANPGMFNRIHVDYYGAVTPITQLSSINVPEARMV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ ++ + +E I S+LG+NP +G V+R+ +P+ TEERR LVK A E +K Sbjct: 66 VIKPYEASQLRPIEDAIRNSDLGVNPTNDGNVIRVSIPQLTEERRRDLVKQAKGKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +SVRNIRR M+ L + +K G A ED VA E D+ K T ID + K+ E++ Sbjct: 126 VSVRNIRRKAMEELTRIKKDGDAGEDDVARAEKDLDKTTQQYTHQIDELVKHKEGELLEV 185 >gi|257055044|ref|YP_003132876.1| ribosome recycling factor [Saccharomonospora viridis DSM 43017] gi|256584916|gb|ACU96049.1| ribosome recycling factor [Saccharomonospora viridis DSM 43017] Length = 185 Score = 234 bits (598), Expect = 5e-60, Method: Composition-based stats. Identities = 67/180 (37%), Positives = 117/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++M +SF K+++ ++RTGR +P+M + VE YG+ PLNQ+A+V + E RM Sbjct: 6 LFDAEEKMEKAVSFAKEELASVRTGRATPAMFSRIVVEYYGAPTPLNQLASVNIPEARMA 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D +A++E+ I ES+LG+NP +G ++R+ +P+ TEERR +VK+A E+++ Sbjct: 66 IIKPYDGSQLANIEKAIRESDLGVNPTNDGSIIRVVIPQLTEERRKEMVKIAKGKGEEAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 IS+R IRR + L + K G+A ED VA E ++Q +TD + +D + K+ E++ Sbjct: 126 ISIRGIRRKAKEELDRIAKDGEAGEDEVARAEKELQNLTDRYVHQVDELVKNKEAELLEV 185 >gi|22537655|ref|NP_688506.1| ribosome recycling factor [Streptococcus agalactiae 2603V/R] gi|25011612|ref|NP_736007.1| ribosome recycling factor [Streptococcus agalactiae NEM316] gi|76788564|ref|YP_330142.1| ribosome recycling factor [Streptococcus agalactiae A909] gi|76799120|ref|ZP_00781307.1| ribosome recycling factor [Streptococcus agalactiae 18RS21] gi|77405174|ref|ZP_00782272.1| ribosome recycling factor [Streptococcus agalactiae H36B] gi|77411699|ref|ZP_00788038.1| ribosome recycling factor [Streptococcus agalactiae CJB111] gi|77413972|ref|ZP_00790145.1| ribosome recycling factor [Streptococcus agalactiae 515] gi|54039298|sp|P66741|RRF_STRA5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|54042006|sp|P66740|RRF_STRA3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|123601478|sp|Q3K011|RRF_STRA1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|22534542|gb|AAN00379.1|AE014261_7 ribosome recycling factor [Streptococcus agalactiae 2603V/R] gi|24413152|emb|CAD47230.1| ribosome recycling factor [Streptococcus agalactiae NEM316] gi|76563621|gb|ABA46205.1| ribosome recycling factor [Streptococcus agalactiae A909] gi|76585524|gb|EAO62095.1| ribosome recycling factor [Streptococcus agalactiae 18RS21] gi|77159952|gb|EAO71090.1| ribosome recycling factor [Streptococcus agalactiae 515] gi|77162271|gb|EAO73243.1| ribosome recycling factor [Streptococcus agalactiae CJB111] gi|77176176|gb|EAO78947.1| ribosome recycling factor [Streptococcus agalactiae H36B] gi|319745486|gb|EFV97790.1| ribosome recycling factor [Streptococcus agalactiae ATCC 13813] Length = 185 Score = 234 bits (598), Expect = 5e-60, Method: Composition-based stats. Identities = 75/180 (41%), Positives = 115/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + ++R + L ++ +R GR + S+LD ++VE YG+ PLNQ+A++TV E R+L Sbjct: 6 VTKAQERFEQSHQSLSREFAGIRAGRANASLLDRIQVEYYGAPTPLNQLASITVPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +DK + +ER I+ES+LG+NP +G V+R+ +P TEE R L K E +K Sbjct: 66 LISPFDKSSIKDIERAINESDLGINPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIRRD MD KK K+ + +ED + SLE DIQK TD +K+ID K+KE++ Sbjct: 126 IAIRNIRRDAMDEAKKQEKNKEITEDDLKSLEKDIQKATDDAVKHIDEMTANKEKELLEV 185 >gi|154500382|ref|ZP_02038420.1| hypothetical protein BACCAP_04049 [Bacteroides capillosus ATCC 29799] gi|150270887|gb|EDM98170.1| hypothetical protein BACCAP_04049 [Bacteroides capillosus ATCC 29799] Length = 184 Score = 234 bits (598), Expect = 5e-60, Method: Composition-based stats. Identities = 71/186 (38%), Positives = 110/186 (59%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 MN+ + +M T+ +K D ++R GR + ++LD + V+ YG PLNQV ++ Sbjct: 1 MNEAN--KEFDAKMQKTVDVVKSDFASVRAGRANAAVLDKITVDYYGVPTPLNQVGGISS 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 +PR LV+ WD +++ +E+ I S+LG+NP +G+V+R+ P+ TEERR L K Sbjct: 59 PDPRSLVIQPWDTKLLKDIEKAIQTSDLGINPQNDGRVIRLNFPQLTEERRKDLTKQVRK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE K+++RNIRRD MD K K + +ED LE ++Q +TD K ID E+K+ Sbjct: 119 YAEAGKVAIRNIRRDAMDKFKAMEKKSEITEDDRKELEKELQDLTDKRCKQIDELTEKKE 178 Query: 181 KEIMHF 186 E+M Sbjct: 179 AELMAV 184 >gi|304439992|ref|ZP_07399885.1| ribosome recycling factor [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371484|gb|EFM25097.1| ribosome recycling factor [Peptoniphilus duerdenii ATCC BAA-1640] Length = 184 Score = 234 bits (598), Expect = 5e-60, Method: Composition-based stats. Identities = 72/178 (40%), Positives = 116/178 (65%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 +D+M +I LK D++++R GR +P++LD + VE YG PLNQVA ++ E R+LVV Sbjct: 7 EAEDKMKKSIEVLKDDLLSIRAGRANPALLDKITVEYYGQVTPLNQVAGISAPEARLLVV 66 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 WD+ +++ +E+ I +S+LGLNP +G+V+R+ +P+ TEERR L K+ E +K++ Sbjct: 67 QPWDQSLISVIEKEILKSDLGLNPSNDGKVVRLIIPQLTEERRRDLTKIVKKNGEDTKVA 126 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +RNIRR +D +KK K + SED E+ +Q++TD IK +D + K+ E+M Sbjct: 127 IRNIRRVAIDEVKKLEKDKEISEDERKVAEDKVQELTDKYIKEVDVVTKAKEDELMEI 184 >gi|240146850|ref|ZP_04745451.1| ribosome recycling factor [Roseburia intestinalis L1-82] gi|257200994|gb|EEU99278.1| ribosome recycling factor [Roseburia intestinalis L1-82] gi|291536044|emb|CBL09156.1| ribosome recycling factor [Roseburia intestinalis M50/1] gi|291538537|emb|CBL11648.1| ribosome recycling factor [Roseburia intestinalis XB6B4] Length = 184 Score = 234 bits (598), Expect = 5e-60, Method: Composition-based stats. Identities = 77/180 (42%), Positives = 109/180 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++M T++ L ++ ++R GR +P +LD +KV+ YG+ + QVANV V EPRM+ Sbjct: 5 LVQFDEKMQKTMNNLSEEFGSIRAGRANPHVLDKLKVDYYGTPTAIQQVANVNVPEPRMI 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + W+ MV +E+ I S+LG+NP +G+V+R+ PE TEERR L K E +K Sbjct: 65 QIQPWEASMVKEIEKAILTSDLGINPTNDGKVIRLLFPELTEERRKELAKDVKKKGENAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD D KK KS SED V LE+ QK+TD I ID E K KEI+ Sbjct: 125 VAIRNIRRDANDSFKKLSKSADVSEDEVKELEDGAQKMTDKYITEIDKAVEAKTKEILTV 184 >gi|121608413|ref|YP_996220.1| ribosome recycling factor [Verminephrobacter eiseniae EF01-2] gi|166231526|sp|A1WHU5|RRF_VEREI RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|121553053|gb|ABM57202.1| ribosome recycling factor [Verminephrobacter eiseniae EF01-2] Length = 186 Score = 234 bits (598), Expect = 5e-60, Method: Composition-based stats. Identities = 73/177 (41%), Positives = 115/177 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ RM +I+ + ++ +RTGR +P++LD V+V+ YG+ VPL+QVANV +++ R + Sbjct: 8 KHAATRMDQSIAAFRNNLQKIRTGRANPALLDAVQVDYYGALVPLSQVANVALIDARTIS 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K M A +E+ I +S+LGLNP G ++R+P+P ++ERR + K+A E +KI Sbjct: 68 VQPWEKGMGAKIEKAIRDSDLGLNPAAMGDLIRVPMPPMSQERRKEMTKLARNEGESAKI 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +VRN+RRD + +KK K ASED E ++QK TD I ID+ K++EIM Sbjct: 128 AVRNLRRDANESIKKLVKDKLASEDEQKRAETEVQKFTDKHIAEIDALVAAKEQEIM 184 >gi|302554446|ref|ZP_07306788.1| ribosome recycling factor [Streptomyces viridochromogenes DSM 40736] gi|302472064|gb|EFL35157.1| ribosome recycling factor [Streptomyces viridochromogenes DSM 40736] Length = 185 Score = 234 bits (598), Expect = 5e-60, Method: Composition-based stats. Identities = 61/180 (33%), Positives = 105/180 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K+D +RTGR P+M + + + YG+ P+NQ+A+ +V EPRM Sbjct: 6 LLEAEEKMEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGAPTPINQLASFSVPEPRMA 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV+ +DK + ++E+ I +S+LG+NP +G ++R+ PE TEERR +KVA E +K Sbjct: 66 VVTPFDKSALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEERRREYIKVAKGKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 IS+R++RR + + K K G+ ED E ++ T + +D + K+ E++ Sbjct: 126 ISIRSVRRKAKEAIDKLIKDGEVGEDEGRRAEKELDDTTAKYVTQVDELLKHKEAELLEV 185 >gi|227549021|ref|ZP_03979070.1| ribosome recycling factor [Corynebacterium lipophiloflavum DSM 44291] gi|227078875|gb|EEI16838.1| ribosome recycling factor [Corynebacterium lipophiloflavum DSM 44291] Length = 185 Score = 234 bits (598), Expect = 5e-60, Method: Composition-based stats. Identities = 69/180 (38%), Positives = 113/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +DRM + +++++++RTGR +P+M + V + YG+ P+NQ+A V+V EPRML Sbjct: 6 LLDSEDRMSKAVEHTREELVSIRTGRANPAMFNGVVADFYGAPTPINQMATVSVPEPRML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D + + I S+LG+NP +GQV+R+ VP+ TEERR LVK A E+ K Sbjct: 66 LIKPFDMSTLNEILNAIRNSDLGVNPTDDGQVIRVTVPQLTEERRRELVKQAKQKGEEGK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RN+RR GM+ LKK +K G A ED V + E + K T + +D +K+ E++ Sbjct: 126 VAIRNVRRQGMEALKKIQKDGDAGEDEVKTAEQALDKTTARYVAQVDEIVSKKEAELLEV 185 >gi|258423900|ref|ZP_05686785.1| ribosome recycling factor [Staphylococcus aureus A9635] gi|257845929|gb|EEV69958.1| ribosome recycling factor [Staphylococcus aureus A9635] Length = 184 Score = 234 bits (597), Expect = 5e-60, Method: Composition-based stats. Identities = 79/186 (42%), Positives = 119/186 (63%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ +I+ K RM +I L +++ + GR + ++L+ V V+ YG+ P+ Q+A++ V Sbjct: 1 MSDIIN--ETKSRMQKSIESLSRELANISAGRANSNLLNGVTVDYYGAPTPVQQLASINV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R+LV+S +DK VA +E+ I +NLG+NP +G+V+RI VP TEERR VK Sbjct: 59 PEARLLVISPYDKSSVADIEKAIIAANLGVNPTSDGEVIRIAVPALTEERRKERVKDVKK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E++K+SVRNIRRD D LKK K+G +ED + S D+QK TD++IK ID +K+ Sbjct: 119 IGEEAKVSVRNIRRDMNDQLKKDEKNGDITEDELRSGTEDVQKATDNSIKEIDQMIADKE 178 Query: 181 KEIMHF 186 K+IM Sbjct: 179 KDIMSV 184 >gi|328950711|ref|YP_004368046.1| Ribosome-recycling factor [Marinithermus hydrothermalis DSM 14884] gi|328451035|gb|AEB11936.1| Ribosome-recycling factor [Marinithermus hydrothermalis DSM 14884] Length = 185 Score = 234 bits (597), Expect = 5e-60, Method: Composition-based stats. Identities = 74/176 (42%), Positives = 112/176 (63%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 + M T+ + ++ LRTGR +P++L +KVE YGS +PLNQVA+V+ + R LVV Sbjct: 8 EARAHMQKTVEAFEANLGGLRTGRANPALLAHLKVEYYGSVMPLNQVASVSAPDARTLVV 67 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 WD+ + ++E+ I ES+LGLNP G L I +P TEERR + + A YAE+++I+ Sbjct: 68 QAWDQNALPAIEKAIRESDLGLNPNNRGDALYIQIPPLTEERRKEIARTARGYAEEARIA 127 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 VRN RR+ +D +KK K SED ++++QKIT+ I ID+ E+K+ EI+ Sbjct: 128 VRNARREALDQIKKLEKEKLLSEDEAKRAQDEVQKITNEFIDKIDAILEKKEHEIL 183 >gi|242373550|ref|ZP_04819124.1| peptide chain release factor RF4 [Staphylococcus epidermidis M23864:W1] gi|242348913|gb|EES40515.1| peptide chain release factor RF4 [Staphylococcus epidermidis M23864:W1] Length = 184 Score = 234 bits (597), Expect = 5e-60, Method: Composition-based stats. Identities = 79/186 (42%), Positives = 123/186 (66%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ +I ++ K RM +I L +++ + GR + ++L+ V V+ YG+ P+ Q+A+++V Sbjct: 1 MSDII--KDTKARMQKSIDNLSRELANISAGRANSNLLNGVTVDYYGAPTPVQQLASISV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R+LV+S +DK V +E+ I +NLG+NP +G+V+RI VP TEERR LVK Sbjct: 59 PEARLLVISPYDKTSVDDIEKAIIAANLGVNPTSDGEVIRISVPALTEERRKELVKDVKK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E +K+S+RNIRRD DHLKK K+G +ED + S +D+QK TD++IK ID ++K+ Sbjct: 119 IGEDAKVSIRNIRRDINDHLKKQEKNGDITEDDLRSQTDDVQKATDNSIKEIDQLVDDKE 178 Query: 181 KEIMHF 186 K+IM Sbjct: 179 KDIMSV 184 >gi|217964539|ref|YP_002350217.1| ribosome recycling factor [Listeria monocytogenes HCC23] gi|290893573|ref|ZP_06556556.1| ribosome recycling factor [Listeria monocytogenes FSL J2-071] gi|315282161|ref|ZP_07870629.1| ribosome recycling factor [Listeria marthii FSL S4-120] gi|254809517|sp|B8DG13|RRF_LISMH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|217333809|gb|ACK39603.1| ribosome recycling factor [Listeria monocytogenes HCC23] gi|290556918|gb|EFD90449.1| ribosome recycling factor [Listeria monocytogenes FSL J2-071] gi|307570895|emb|CAR84074.1| frr [Listeria monocytogenes L99] gi|313608995|gb|EFR84735.1| ribosome recycling factor [Listeria monocytogenes FSL F2-208] gi|313614193|gb|EFR87869.1| ribosome recycling factor [Listeria marthii FSL S4-120] Length = 185 Score = 234 bits (597), Expect = 5e-60, Method: Composition-based stats. Identities = 77/180 (42%), Positives = 121/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K++M L + + T+R GR + S+LD + V+ YG+ P+NQ+A+++V E RML Sbjct: 6 LSKSKEKMEKAEQALTRQLGTIRAGRANASLLDRLSVDYYGAATPVNQMASISVPEARML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK ++ +E+ I +S+LGL P +G VLR+ +P+ TEERR LVK AE++K Sbjct: 66 LITPYDKTILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRR+ + LKK KSG +ED + S D+QK+TD +IKNIDS ++K+ EI+ Sbjct: 126 VAVRNIRREANEELKKLEKSGDITEDDLRSYGEDVQKLTDESIKNIDSITKDKEAEILEV 185 >gi|16803354|ref|NP_464839.1| ribosome recycling factor [Listeria monocytogenes EGD-e] gi|46907540|ref|YP_013929.1| ribosome recycling factor [Listeria monocytogenes serotype 4b str. F2365] gi|47094294|ref|ZP_00231999.1| ribosome recycling factor [Listeria monocytogenes str. 4b H7858] gi|47096939|ref|ZP_00234516.1| ribosome recycling factor [Listeria monocytogenes str. 1/2a F6854] gi|224501742|ref|ZP_03670049.1| ribosome recycling factor [Listeria monocytogenes FSL R2-561] gi|226223915|ref|YP_002758022.1| ribosome recycling factor [Listeria monocytogenes Clip81459] gi|254824627|ref|ZP_05229628.1| ribosome recycling factor [Listeria monocytogenes FSL J1-194] gi|254828675|ref|ZP_05233362.1| ribosome recycling factor [Listeria monocytogenes FSL N3-165] gi|254829929|ref|ZP_05234584.1| ribosome recycling factor [Listeria monocytogenes 10403S] gi|254852635|ref|ZP_05241983.1| ribosome recycling factor [Listeria monocytogenes FSL R2-503] gi|254898521|ref|ZP_05258445.1| ribosome recycling factor [Listeria monocytogenes J0161] gi|254911988|ref|ZP_05262000.1| ribosome recycling factor [Listeria monocytogenes J2818] gi|254932371|ref|ZP_05265730.1| ribosome recycling factor [Listeria monocytogenes HPB2262] gi|254936315|ref|ZP_05268012.1| ribosome recycling factor [Listeria monocytogenes F6900] gi|254992874|ref|ZP_05275064.1| ribosome recycling factor [Listeria monocytogenes FSL J2-064] gi|255026995|ref|ZP_05298981.1| ribosome recycling factor [Listeria monocytogenes FSL J2-003] gi|255522289|ref|ZP_05389526.1| ribosome recycling factor [Listeria monocytogenes FSL J1-175] gi|284801699|ref|YP_003413564.1| hypothetical protein LM5578_1453 [Listeria monocytogenes 08-5578] gi|284994841|ref|YP_003416609.1| hypothetical protein LM5923_1406 [Listeria monocytogenes 08-5923] gi|300765446|ref|ZP_07075428.1| ribosome recycling factor [Listeria monocytogenes FSL N1-017] gi|22001941|sp|Q8Y7G7|RRF_LISMO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|60390258|sp|Q720A8|RRF_LISMF RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|259494548|sp|C1L2M0|RRF_LISMC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|16410730|emb|CAC99392.1| frr [Listeria monocytogenes EGD-e] gi|46880808|gb|AAT04106.1| ribosome recycling factor [Listeria monocytogenes serotype 4b str. F2365] gi|47014699|gb|EAL05655.1| ribosome recycling factor [Listeria monocytogenes str. 1/2a F6854] gi|47017338|gb|EAL08166.1| ribosome recycling factor [Listeria monocytogenes str. 4b H7858] gi|225876377|emb|CAS05086.1| Putative ribosome recycling factor [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258601078|gb|EEW14403.1| ribosome recycling factor [Listeria monocytogenes FSL N3-165] gi|258605951|gb|EEW18559.1| ribosome recycling factor [Listeria monocytogenes FSL R2-503] gi|258608905|gb|EEW21513.1| ribosome recycling factor [Listeria monocytogenes F6900] gi|284057261|gb|ADB68202.1| hypothetical protein LM5578_1453 [Listeria monocytogenes 08-5578] gi|284060308|gb|ADB71247.1| hypothetical protein LM5923_1406 [Listeria monocytogenes 08-5923] gi|293583927|gb|EFF95959.1| ribosome recycling factor [Listeria monocytogenes HPB2262] gi|293589952|gb|EFF98286.1| ribosome recycling factor [Listeria monocytogenes J2818] gi|293593865|gb|EFG01626.1| ribosome recycling factor [Listeria monocytogenes FSL J1-194] gi|300513883|gb|EFK40948.1| ribosome recycling factor [Listeria monocytogenes FSL N1-017] gi|328468599|gb|EGF39599.1| ribosome recycling factor [Listeria monocytogenes 1816] gi|328475037|gb|EGF45825.1| ribosome recycling factor [Listeria monocytogenes 220] gi|332311757|gb|EGJ24852.1| Ribosome-recycling factor [Listeria monocytogenes str. Scott A] Length = 185 Score = 234 bits (597), Expect = 5e-60, Method: Composition-based stats. Identities = 76/180 (42%), Positives = 121/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K++M L + + T+R GR + S+LD + V+ YG+ P+NQ+A+++V E RML Sbjct: 6 LSKSKEKMEKAEQALTRQLGTIRAGRANASLLDRLSVDYYGAATPVNQMASISVPEARML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK ++ +E+ I +S+LGL P +G VLR+ +P+ TEERR LVK AE++K Sbjct: 66 LITPYDKTILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRR+ + LKK K+G +ED + S D+QK+TD +IKNIDS ++K+ EI+ Sbjct: 126 VAVRNIRREANEELKKLEKNGDITEDDLRSYGEDVQKLTDESIKNIDSITKDKEAEILEV 185 >gi|51245009|ref|YP_064893.1| ribosome recycling factor [Desulfotalea psychrophila LSv54] gi|60390247|sp|Q6AP38|RRF_DESPS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|50876046|emb|CAG35886.1| probable ribosome recycling factor [Desulfotalea psychrophila LSv54] Length = 184 Score = 234 bits (597), Expect = 5e-60, Method: Composition-based stats. Identities = 79/186 (42%), Positives = 121/186 (65%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M++VI + RM ++ K D+ +RTGR S S+LD + V AYGS +PLNQVA +T+ Sbjct: 1 MSEVI--VEMSGRMAKSVEAFKNDLSRVRTGRASISILDDITVVAYGSTMPLNQVATLTI 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E RM+ + WD +M+ +E+ I +S LGLNP+ +G+V+R+ +P+ TE+RR LVK Sbjct: 59 PESRMIALQPWDPQMIPPIEKAILKSGLGLNPVNDGKVVRLNIPQLTEDRRKDLVKQVKK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE+ ++++RN+RRD +D LK +K + SED + L++D QK TD IK +D K+ Sbjct: 119 IAEEFRVAIRNVRRDAIDTLKLQKKDKEISEDDLFKLQDDAQKETDIYIKQLDEVSASKE 178 Query: 181 KEIMHF 186 KE+M Sbjct: 179 KEVMEV 184 >gi|146278188|ref|YP_001168347.1| ribosome recycling factor [Rhodobacter sphaeroides ATCC 17025] gi|190360248|sp|A4WUH8|RRF_RHOS5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|145556429|gb|ABP71042.1| ribosome recycling factor [Rhodobacter sphaeroides ATCC 17025] Length = 188 Score = 234 bits (597), Expect = 5e-60, Method: Composition-based stats. Identities = 84/182 (46%), Positives = 127/182 (69%), Gaps = 1/182 (0%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 IDL I+ RM + L+ + +LRTGR S S+L+ + V+AYG PLNQ+ + V EPR Sbjct: 8 IDLDAIQRRMDGAMHALRTEFGSLRTGRASASILEPIHVDAYGQQTPLNQLGTINVPEPR 67 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+V++VWDK M++ VER I +S +G+NP+V+G ++R+P+PE EERR L KVA YAE+ Sbjct: 68 MVVINVWDKGMISKVERAIRDSGIGINPVVDGPIIRLPIPELNEERRKELTKVAAHYAEQ 127 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++++RN+RRDGMD +KK++ +G +ED +++Q +TD I +D EEK+KEIM Sbjct: 128 ARVAIRNVRRDGMDQIKKAKAAG-MAEDDQKMWSDEVQALTDKAIAAVDKALEEKQKEIM 186 Query: 185 HF 186 Sbjct: 187 QV 188 >gi|313619142|gb|EFR90928.1| ribosome recycling factor [Listeria innocua FSL S4-378] Length = 176 Score = 234 bits (597), Expect = 6e-60, Method: Composition-based stats. Identities = 75/176 (42%), Positives = 120/176 (68%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K++M L + + T+R GR + S+LD + V+ YG+ P+NQ+A+++V E RML+++ Sbjct: 1 KEKMEKAEQALTRQLGTIRAGRANASLLDRLTVDYYGAATPVNQMASISVPEARMLLITP 60 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +DK ++ +E+ I +S+LGL P +G VLR+ +P+ TEERR LVK AE++K++VR Sbjct: 61 YDKTILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAKVAVR 120 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 NIRR+ + LKK K+G +ED + S D+QK+TD +IKNIDS ++K+ EI+ Sbjct: 121 NIRREANEDLKKLEKNGDITEDDLRSYGEDVQKLTDESIKNIDSITKDKEAEILEV 176 >gi|77463257|ref|YP_352761.1| ribosome recycling factor [Rhodobacter sphaeroides 2.4.1] gi|123592078|sp|Q3J2X4|RRF_RHOS4 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|77387675|gb|ABA78860.1| ribosome recycling factor [Rhodobacter sphaeroides 2.4.1] Length = 188 Score = 234 bits (597), Expect = 6e-60, Method: Composition-based stats. Identities = 85/182 (46%), Positives = 126/182 (69%), Gaps = 1/182 (0%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 IDL I+ RM + L+ + +LRTGR S S+L+ + V+AYG PLNQ+ + V EPR Sbjct: 8 IDLDAIQRRMDGAMHALRTEFGSLRTGRASASILEPIHVDAYGQQTPLNQLGTINVPEPR 67 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+V++VWDK M++ VER I +S +G+NP+V+G ++R+P+PE EERR L KVA YAE+ Sbjct: 68 MVVINVWDKGMISKVERAIRDSGIGINPVVDGPIIRLPIPELNEERRKELSKVAAHYAEQ 127 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++++RN+RRDGMD +KK+ KS +ED +++Q +TD I +D EEK+KEIM Sbjct: 128 ARVAIRNVRRDGMDQIKKA-KSVGMAEDDQKMWSDEVQALTDKAIAAVDKALEEKQKEIM 186 Query: 185 HF 186 Sbjct: 187 QV 188 >gi|304391648|ref|ZP_07373590.1| ribosome recycling factor [Ahrensia sp. R2A130] gi|303295877|gb|EFL90235.1| ribosome recycling factor [Ahrensia sp. R2A130] Length = 186 Score = 234 bits (597), Expect = 6e-60, Method: Composition-based stats. Identities = 85/186 (45%), Positives = 123/186 (66%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M IDL++++ RM +++ KD+ LRTGR S S+LD V V+AYG +P+NQVANV Sbjct: 1 MADGIDLKDVEKRMETSLASFTKDLGGLRTGRASASLLDPVMVDAYGQKMPINQVANVGA 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EP+++ V +WDK MV VE+ + E+ LGLNP+V+GQ LRIP+P+ EERR LVKVA Sbjct: 61 PEPKLITVQIWDKSMVGPVEKAVREAGLGLNPVVDGQNLRIPMPDLNEERRRDLVKVAKT 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE +K+++R++RRD M+ LKK+ K + +D +QK+TD + +D K+ Sbjct: 121 YAEDAKVTIRHVRRDAMETLKKAEKDKEIGQDEARGSSEKVQKMTDDKVNEVDKVLATKE 180 Query: 181 KEIMHF 186 EIM Sbjct: 181 GEIMQV 186 >gi|238916787|ref|YP_002930304.1| ribosome recycling factor [Eubacterium eligens ATCC 27750] gi|238872147|gb|ACR71857.1| ribosome recycling factor [Eubacterium eligens ATCC 27750] Length = 187 Score = 234 bits (597), Expect = 6e-60, Method: Composition-based stats. Identities = 72/181 (39%), Positives = 118/181 (65%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 ++++I+ RM ++ LK++ +T+R GR +P +LD ++V+ YG+ P+ QVANV+V E RM Sbjct: 7 NIKDIEGRMQKSVDNLKEEYVTIRAGRANPHILDRLRVDYYGTPTPIQQVANVSVPEARM 66 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 + + W+ ++ +E+ I S+LGL P +G+ +R+ PE TE+RR L K + + Sbjct: 67 IQIQPWEASLIKDIEKAILVSDLGLTPNNDGKTIRLVFPELTEDRRKELAKDIKKKGDNA 126 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 K+++RNIRRD D +KK K+G S+D + E++IQKITD I IDS ++K KEI+ Sbjct: 127 KVAIRNIRRDANDAIKKENKAGDISDDEAKNSEDEIQKITDKYIAMIDSAIDDKTKEILT 186 Query: 186 F 186 Sbjct: 187 V 187 >gi|295110296|emb|CBL24249.1| ribosome recycling factor [Ruminococcus obeum A2-162] Length = 183 Score = 234 bits (597), Expect = 6e-60, Method: Composition-based stats. Identities = 77/180 (42%), Positives = 116/180 (64%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q + +M T++ ++++ T+R GR +P +LD + V+ YGS PL QVAN+TV E RM+ Sbjct: 5 VQKYEQKMTKTLNGFEEELTTIRAGRANPHILDKITVDYYGSPTPLQQVANITVPEARMI 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + W+ ++ S+E+ I S+LGLNP +G+++R+ +PE TEERR LVK E +K Sbjct: 65 QIQPWESSLIKSIEKAILTSDLGLNPSNDGKLIRLVLPELTEERRKELVKDVKKKGEAAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD D KK K SED + LE+ +QK+TD IK ID+ + K KEI+ Sbjct: 125 VAVRNIRRDANDAFKKLTKQ-DVSEDEIKDLEDSVQKLTDKFIKKIDAAVDTKAKEILTV 183 >gi|319948055|ref|ZP_08022229.1| ribosome recycling factor [Dietzia cinnamea P4] gi|319438294|gb|EFV93240.1| ribosome recycling factor [Dietzia cinnamea P4] Length = 185 Score = 233 bits (596), Expect = 6e-60, Method: Composition-based stats. Identities = 69/180 (38%), Positives = 114/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + ++ ++ ++RTGR +P M + V E YG+ P+ Q++++TV EPRML Sbjct: 6 LLEAEEKMERALEHVRDELASIRTGRANPGMFNRVLCEYYGTLTPITQMSSITVPEPRML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ ++ + +E I S+LG+NP +GQVLR+ VP+ TEERR LVK A A AE + Sbjct: 66 IIKPYEMSQIGPIENAIRNSDLGVNPTNDGQVLRVTVPQLTEERRRDLVKQAKAKAEDGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I+VR +RR MD LK+ +K G+A ED V + E ++ K+T + ++D + K+ E+M Sbjct: 126 IAVRGVRRKAMDELKRIQKDGEAGEDEVTAAEKELDKLTQRYVADVDDLVKVKEGELMEV 185 >gi|239928669|ref|ZP_04685622.1| ribosome recycling factor [Streptomyces ghanaensis ATCC 14672] Length = 186 Score = 233 bits (596), Expect = 6e-60, Method: Composition-based stats. Identities = 62/180 (34%), Positives = 105/180 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K+D +RTGR P+M + + + YG+ P+NQ+A+ +V EPRM Sbjct: 7 LLEAEEKMEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMA 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV+ +DK + ++E+ I +S+LG+NP +G ++R+ PE TEERR +KVA A E +K Sbjct: 67 VVTPFDKSALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEERRREFIKVAKAKGEDAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+R +RR D + K K G+ ED E ++ T + +D + K+ E++ Sbjct: 127 VSIRAVRRKAKDAIDKLIKDGEVGEDEGRRAEKELDDTTAKYVAQVDELLKHKEAELLEV 186 >gi|268610455|ref|ZP_06144182.1| ribosome recycling factor [Ruminococcus flavefaciens FD-1] Length = 184 Score = 233 bits (596), Expect = 6e-60, Method: Composition-based stats. Identities = 77/186 (41%), Positives = 119/186 (63%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M + I+ K++M I+ L + ++R GR +PS+LD V V+ YG+ P+NQ+A V+V Sbjct: 1 MKETIN--QAKEKMTKCINSLGNEFASIRAGRANPSVLDKVTVDYYGAPTPINQLAAVSV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R LV+S W+K + ++E+ I S++G+NP +G V+R+ P+ TE+RR L K Sbjct: 59 SEGRTLVISPWEKPQLKAIEKAIQASDIGINPTNDGNVIRLTFPQLTEDRRKELAKEIKG 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 EK+K++VRN RRD M+ LKK +K+ + +ED +A E +QKITD I +ID +K+ Sbjct: 119 LGEKAKVTVRNARRDTMEKLKKMKKNSEITEDELADGEKKVQKITDGFIDDIDKAVADKE 178 Query: 181 KEIMHF 186 KEIM Sbjct: 179 KEIMTV 184 >gi|118617645|ref|YP_905977.1| ribosome recycling factor [Mycobacterium ulcerans Agy99] gi|166230805|sp|A0PQ87|RRF_MYCUA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|118569755|gb|ABL04506.1| ribosome recycling factor Frr [Mycobacterium ulcerans Agy99] Length = 185 Score = 233 bits (596), Expect = 6e-60, Method: Composition-based stats. Identities = 68/180 (37%), Positives = 113/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++M +S ++DM T+RTGR +P M + ++ YG+H P+ Q+A++ V E RM+ Sbjct: 6 LFDAEEKMEKAVSVAREDMATIRTGRANPGMFSRIVIDYYGTHTPITQLASINVPEARMV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ ++ + ++E I S+LG+NP +G ++R+ VP+ TEERR LVK A E+++ Sbjct: 66 VIKPYEANQLHAIETAIRNSDLGVNPTNDGTIIRVAVPQLTEERRRDLVKQAKHKGEEAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +SVRNIRR M+ L + RK G+A ED VA E D+ K T + ID + K+ +++ Sbjct: 126 VSVRNIRRKAMEELHRIRKDGEAGEDEVARAEKDLDKSTHQYVAQIDELVKHKEGDLLEV 185 >gi|134102473|ref|YP_001108134.1| ribosome recycling factor [Saccharopolyspora erythraea NRRL 2338] gi|291004136|ref|ZP_06562109.1| ribosome recycling factor [Saccharopolyspora erythraea NRRL 2338] gi|166231222|sp|A4FMD4|RRF_SACEN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|133915096|emb|CAM05209.1| ribosome recycling factor [Saccharopolyspora erythraea NRRL 2338] Length = 185 Score = 233 bits (596), Expect = 6e-60, Method: Composition-based stats. Identities = 61/180 (33%), Positives = 111/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K ++ T+RTGR +P+M + V+ YGS PLNQ+A+++V E R++ Sbjct: 6 LLEGEEKMQKAVEVAKDELATVRTGRANPAMFSGIVVDYYGSPTPLNQLASISVPEARLV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +D + ++E+ I +S+LG+NP +GQ++R+ +P+ TEERR +VK+A E+ + Sbjct: 66 VIKPYDASQLGAMEKAIRDSDLGVNPSNDGQLIRVSIPQMTEERRKEMVKLAKHKGEEGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I+VR IRR + + + K G+A ED E +++ +T + ID + K+ E++ Sbjct: 126 ITVRGIRRKVKEEIDRIVKDGEAGEDEGTRGEKELENLTHRYVAQIDELVKHKEAELLEV 185 >gi|254439528|ref|ZP_05053022.1| ribosome recycling factor [Octadecabacter antarcticus 307] gi|198254974|gb|EDY79288.1| ribosome recycling factor [Octadecabacter antarcticus 307] Length = 187 Score = 233 bits (596), Expect = 7e-60, Method: Composition-based stats. Identities = 84/185 (45%), Positives = 120/185 (64%), Gaps = 1/185 (0%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 + ++D ++ RM I+ L+ + +LRTGR S S+L+ + V+AYGS P+NQV V V Sbjct: 4 DFILDTDDLTRRMDGAIANLRVEFASLRTGRASASILEPIMVDAYGSQTPINQVGTVNVP 63 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 E RM+ V+VWDK +V VE+ I ES LG+NP + G ++ +P+PE EERR L KVA Y Sbjct: 64 ESRMVTVNVWDKGLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRTQLTKVAGTY 123 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 AE ++S+RN+RRDGMD +KK++ G SED E ++Q +T+ IK ID E K+ Sbjct: 124 AENGRVSIRNLRRDGMDQIKKAKNDG-ISEDDQKFWEGEMQGLTNDYIKRIDDQLEIKQA 182 Query: 182 EIMHF 186 EIM Sbjct: 183 EIMQV 187 >gi|322372351|ref|ZP_08046887.1| ribosome recycling factor [Streptococcus sp. C150] gi|321277393|gb|EFX54462.1| ribosome recycling factor [Streptococcus sp. C150] Length = 185 Score = 233 bits (596), Expect = 7e-60, Method: Composition-based stats. Identities = 78/180 (43%), Positives = 116/180 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+R + L ++ ++R GR + S+LD + VE YG+ PLNQ+A++TV E R+L Sbjct: 6 IEKAKERFAHSHESLAREFGSIRAGRANASLLDRITVEYYGAPTPLNQLASITVPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +DK +A +ER I+ES+LG+NP +G V+R+ +P TEE R L K E +K Sbjct: 66 LISPFDKGSIADIERAINESDLGINPANDGSVVRLVIPALTEETRKELAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIRRD MD KK K + +ED + LE DIQK TD +K IDS EK+KE++ Sbjct: 126 IAIRNIRRDAMDEAKKQEKDKEITEDQLKGLEKDIQKATDDAVKKIDSMTAEKEKELLTV 185 >gi|210615979|ref|ZP_03290879.1| hypothetical protein CLONEX_03098 [Clostridium nexile DSM 1787] gi|210149984|gb|EEA80993.1| hypothetical protein CLONEX_03098 [Clostridium nexile DSM 1787] Length = 185 Score = 233 bits (596), Expect = 7e-60, Method: Composition-based stats. Identities = 80/186 (43%), Positives = 114/186 (61%), Gaps = 3/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 MN+ LQ +M T+ L ++ T+R GR +P +LD + V+ YGS P+ QVAN++V Sbjct: 3 MNE--KLQVYDTKMQKTLHSLDAELATIRAGRANPHILDKLTVDYYGSATPIQQVANISV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E RM+ + W+K MV +E+ I S++G+NP +G V+R+ PE TEERR LVK Sbjct: 61 PEARMIQIQPWEKSMVKEIEKAILTSDIGINPTNDGTVIRLVFPELTEERRKELVKDVKK 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E +K++VRNIRRDG D KK K SED + LE ++QK+TD IK +D E K Sbjct: 121 KGEAAKVAVRNIRRDGNDAFKKL-KGSDVSEDEIKGLEEELQKLTDKYIKEVDKSVEAKS 179 Query: 181 KEIMHF 186 KE++ Sbjct: 180 KEVLTV 185 >gi|166031004|ref|ZP_02233833.1| hypothetical protein DORFOR_00685 [Dorea formicigenerans ATCC 27755] gi|166029271|gb|EDR48028.1| hypothetical protein DORFOR_00685 [Dorea formicigenerans ATCC 27755] Length = 183 Score = 233 bits (596), Expect = 7e-60, Method: Composition-based stats. Identities = 80/186 (43%), Positives = 118/186 (63%), Gaps = 3/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 MN+ L+ +M T+ L +M T+R GR +P++L+ + V+ YG+ P+ QVANV+V Sbjct: 1 MNE--KLKVYDTKMQKTMDSLDSEMGTIRAGRANPNVLNRIMVDYYGTPTPIQQVANVSV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPRM+ + W+K M+ +E+ I S+LG+NP +G +R+ PE TEERR LVK Sbjct: 59 PEPRMIQIQPWEKSMLKVIEKAIMVSDLGINPTNDGTAVRLIFPELTEERRKELVKDVKK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E +K+++RNIRRDG D KK K SED + +LE+++QK+TD +K IDS E K Sbjct: 119 KGEAAKVAIRNIRRDGNDAFKKL-KGSDVSEDEIKNLEDELQKMTDKYVKEIDSAVEVKS 177 Query: 181 KEIMHF 186 KE+M Sbjct: 178 KEVMTV 183 >gi|319892274|ref|YP_004149149.1| Ribosome recycling factor [Staphylococcus pseudintermedius HKU10-03] gi|317161970|gb|ADV05513.1| Ribosome recycling factor [Staphylococcus pseudintermedius HKU10-03] gi|323464629|gb|ADX76782.1| ribosome recycling factor [Staphylococcus pseudintermedius ED99] Length = 184 Score = 233 bits (596), Expect = 7e-60, Method: Composition-based stats. Identities = 78/186 (41%), Positives = 119/186 (63%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M ++I Q+ K RM + L +++ + GR + ++L V+V+ YG+ P+ Q+A++ V Sbjct: 1 MKEII--QDAKTRMKKSTENLSRELAQINAGRANSNLLAGVQVDYYGAPTPVQQLASINV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R+LVVS +DK +A +E+ I +NLG+NP +G V+RI VP TEERR +VK Sbjct: 59 PEARLLVVSPYDKTSLADIEKAIIAANLGVNPTSDGDVIRIMVPALTEERRKEIVKEVKK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E +K+S+RNIRRD D LK+ K G SED + + +++QKITDS+IK ID +K+ Sbjct: 119 TGENAKVSIRNIRRDANDTLKRQEKDGDISEDELRNGSDEVQKITDSSIKEIDQLVADKE 178 Query: 181 KEIMHF 186 K+IM Sbjct: 179 KDIMSV 184 >gi|157376290|ref|YP_001474890.1| ribosome recycling factor [Shewanella sediminis HAW-EB3] gi|189044077|sp|A8FY39|RRF_SHESH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|157318664|gb|ABV37762.1| ribosome recycling factor [Shewanella sediminis HAW-EB3] Length = 185 Score = 233 bits (596), Expect = 7e-60, Method: Composition-based stats. Identities = 80/179 (44%), Positives = 109/179 (60%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + K RM + K M +RTGR PS+LD +KV YGS PL QV NV++ + R L Sbjct: 7 NDAKSRMEKCVESTKTQMAKVRTGRAHPSLLDTIKVSYYGSMTPLKQVGNVSIEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+V+D M+ +VE+ I S+LGLNP+ G +RIP+P TEERR L+KV A AE +I Sbjct: 67 VNVFDSTMIQAVEKAIMSSDLGLNPMSAGATIRIPLPALTEERRKDLIKVVRAEAENGRI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD +K K + +ED V E+D+QK TD+ IK ID K+ E+M Sbjct: 127 AVRNVRRDANSDVKSLEKEKECTEDDVRRTEDDVQKFTDAHIKLIDEILTAKEAELMEV 185 >gi|328543714|ref|YP_004303823.1| ribosome-recycling factor [polymorphum gilvum SL003B-26A1] gi|326413458|gb|ADZ70521.1| Ribosome-recycling factor [Polymorphum gilvum SL003B-26A1] Length = 173 Score = 233 bits (596), Expect = 7e-60, Method: Composition-based stats. Identities = 92/173 (53%), Positives = 125/173 (72%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M +S LK ++ LRTGR S SM+D + V AYG +P+NQVA V+V EPRM+ V VWDK Sbjct: 1 MQGALSVLKTELAGLRTGRASSSMMDAIVVNAYGQSMPINQVATVSVPEPRMVAVQVWDK 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 MV +VER I ESNLGLNP+V+GQ+LR+P+PE +ERR L+KVAH YAE++K+++R++R Sbjct: 61 SMVGAVERAIRESNLGLNPVVDGQLLRLPIPELNQERRQELIKVAHKYAEQAKVAIRHVR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RDGMD +KK K G S+D +D+QK+TD I +DS E+K++EI Sbjct: 121 RDGMDMIKKLEKDGAISQDDSRVAADDVQKLTDREIAEVDSMLEKKQQEISQV 173 >gi|291436992|ref|ZP_06576382.1| ribosome recycling factor [Streptomyces ghanaensis ATCC 14672] gi|291339887|gb|EFE66843.1| ribosome recycling factor [Streptomyces ghanaensis ATCC 14672] Length = 185 Score = 233 bits (596), Expect = 7e-60, Method: Composition-based stats. Identities = 62/180 (34%), Positives = 105/180 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K+D +RTGR P+M + + + YG+ P+NQ+A+ +V EPRM Sbjct: 6 LLEAEEKMEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMA 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV+ +DK + ++E+ I +S+LG+NP +G ++R+ PE TEERR +KVA A E +K Sbjct: 66 VVTPFDKSALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEERRREFIKVAKAKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+R +RR D + K K G+ ED E ++ T + +D + K+ E++ Sbjct: 126 VSIRAVRRKAKDAIDKLIKDGEVGEDEGRRAEKELDDTTAKYVAQVDELLKHKEAELLEV 185 >gi|257084575|ref|ZP_05578936.1| ribosome recycling factor [Enterococcus faecalis Fly1] gi|307287723|ref|ZP_07567766.1| ribosome recycling factor [Enterococcus faecalis TX0109] gi|256992605|gb|EEU79907.1| ribosome recycling factor [Enterococcus faecalis Fly1] gi|306501461|gb|EFM70764.1| ribosome recycling factor [Enterococcus faecalis TX0109] gi|315164822|gb|EFU08839.1| ribosome recycling factor [Enterococcus faecalis TX1302] Length = 185 Score = 233 bits (596), Expect = 7e-60, Method: Composition-based stats. Identities = 75/180 (41%), Positives = 124/180 (68%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K++M L++++ +R GR + S+LD ++VE YG+ P+NQ+A++ + E R+L Sbjct: 6 LATAKEKMTKAEESLRRELGQIRAGRANASLLDRIQVEYYGAPTPVNQLASINIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK +A +E+ I S++G++P +G V+R+ +P+ TEERR L K AE SK Sbjct: 66 MITPFDKNSIADIEKAIQMSDIGISPTNDGNVIRLVIPQLTEERRKELAKDVKKEAENSK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I+VRN+RRD MD LKK++K+G +ED + S E D+QK+TD +IKNID+ EK++E++ Sbjct: 126 IAVRNVRRDAMDELKKAQKNGDITEDELRSFEKDVQKLTDDSIKNIDAITAEKEQELLEV 185 >gi|225570389|ref|ZP_03779414.1| hypothetical protein CLOHYLEM_06489 [Clostridium hylemonae DSM 15053] gi|225160760|gb|EEG73379.1| hypothetical protein CLOHYLEM_06489 [Clostridium hylemonae DSM 15053] Length = 183 Score = 233 bits (596), Expect = 7e-60, Method: Composition-based stats. Identities = 77/180 (42%), Positives = 114/180 (63%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ D+M TI+ L+ ++ +R GR +P++L+ + V YG+ P+ QVANV+V E RM+ Sbjct: 5 LKVYDDKMNKTIASLEGELAAIRAGRANPNVLNKIMVNYYGTPTPIQQVANVSVPEARMI 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + W+K MV +E+ I S+LG+NP +G +R+ PE TEERR L K E +K Sbjct: 65 HIQPWEKSMVKEIEKAIMTSDLGINPTNDGSAIRLAFPELTEERRKELAKDVKKKGENAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRDG D LKK K + SED + LE+++QK+TD IK +D E K KE+M Sbjct: 125 VAIRNIRRDGNDTLKKL-KGSEVSEDEIKDLEDELQKLTDKFIKEVDKAVEAKSKEVMTV 183 >gi|114562451|ref|YP_749964.1| ribosome recycling factor [Shewanella frigidimarina NCIMB 400] gi|122300314|sp|Q085D9|RRF_SHEFN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|114333744|gb|ABI71126.1| ribosome recycling factor [Shewanella frigidimarina NCIMB 400] Length = 185 Score = 233 bits (596), Expect = 7e-60, Method: Composition-based stats. Identities = 82/180 (45%), Positives = 115/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + + ++RM + K M +RTGR PS+LD ++V YGS PL QVANV V + R L Sbjct: 6 MLDAQERMSKCVDATKNQMAKVRTGRAHPSLLDSIQVSCYGSMSPLKQVANVGVEDSRTL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+V+D+ MV +VE+ I S+LGLNP+ G LRIP+P TEERR +KV AE + Sbjct: 66 TVNVFDRSMVQAVEKAIMSSDLGLNPMSAGATLRIPLPSLTEERRKDFIKVVRNEAENGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RN+RRD + +KK K+ +ED V E+++QK TDS+IKNID K+KE+M Sbjct: 126 IAIRNVRRDAISEVKKLEKAKACTEDDVRRSEDEVQKHTDSSIKNIDQILAAKEKELMEV 185 >gi|163815219|ref|ZP_02206596.1| hypothetical protein COPEUT_01379 [Coprococcus eutactus ATCC 27759] gi|158449414|gb|EDP26409.1| hypothetical protein COPEUT_01379 [Coprococcus eutactus ATCC 27759] Length = 184 Score = 233 bits (596), Expect = 7e-60, Method: Composition-based stats. Identities = 71/180 (39%), Positives = 112/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M ++ L+ + T+R GR +P++L+ ++VE YG P+ Q+AN+TV E R L Sbjct: 5 LSQYEEKMQKSLDNLEAEYATIRAGRANPNILNKLRVEYYGVPTPMQQLANITVPEARTL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ W+ +V +E+ I S++G+ P +G+ + + PE TE+RR LVK E +K Sbjct: 65 MIAPWEPSLVKEIEKAIMNSDIGITPNNDGRNIILNFPELTEDRRKELVKDIKKKGEAAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD D +KK KSG SED +A E+ IQK+TD + ID E K KEIM Sbjct: 125 VAIRNIRRDANDAIKKMEKSGDISEDELADNEDKIQKLTDKYVGQIDKAVEAKSKEIMTV 184 >gi|296139389|ref|YP_003646632.1| ribosome recycling factor [Tsukamurella paurometabola DSM 20162] gi|296027523|gb|ADG78293.1| ribosome recycling factor [Tsukamurella paurometabola DSM 20162] Length = 185 Score = 233 bits (596), Expect = 7e-60, Method: Composition-based stats. Identities = 62/180 (34%), Positives = 107/180 (59%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++M +S ++D ++RTGR +PSM V V+ YGS P+ Q++++T E R++ Sbjct: 6 LFDAEEKMEKAVSVAREDFQSIRTGRANPSMFAKVMVDYYGSPTPITQISSITTPEARLV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ ++ + ++E I S+LG+NP +GQ++R+ +P+ TEERR LVK + E +K Sbjct: 66 VIKPYEANQLGNIETAIRNSDLGVNPTNDGQLIRVGIPQLTEERRKELVKQVKSKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+RN+RR + + K K G A ED + E D+ K T ID + K+ ++M Sbjct: 126 VSIRNVRRKANEQIAKFVKDGDAGEDEGSRAEKDLDKTTAKYTAQIDDLVKHKEADLMEV 185 >gi|171059528|ref|YP_001791877.1| ribosome recycling factor [Leptothrix cholodnii SP-6] gi|238689083|sp|B1XXJ2|RRF_LEPCP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|170776973|gb|ACB35112.1| ribosome recycling factor [Leptothrix cholodnii SP-6] Length = 186 Score = 233 bits (596), Expect = 7e-60, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 109/179 (60%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N + +M ++ K ++ +RTGR P +LD V V+ YGS++PL+QVANVT+++ R + Sbjct: 8 KNAEAKMAKSVEAFKNELQKIRTGRAHPGILDQVHVDYYGSNLPLSQVANVTLIDARTIS 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K M +E+ I ES+LGLNP G ++R+P+P TEERR L KV E SK+ Sbjct: 68 VQPWEKSMAQKIEKAIRESDLGLNPSSMGDLIRVPMPALTEERRKELTKVVRHAGEDSKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD D KK K SED +++QK+TD I ID K+ EI+ Sbjct: 128 AVRNLRRDANDQAKKLLKDKLISEDDERRSVDEVQKLTDRVIAEIDRLVHGKEAEILAV 186 >gi|319946529|ref|ZP_08020764.1| ribosome recycling factor [Streptococcus australis ATCC 700641] gi|319747275|gb|EFV99533.1| ribosome recycling factor [Streptococcus australis ATCC 700641] Length = 185 Score = 233 bits (596), Expect = 8e-60, Method: Composition-based stats. Identities = 66/180 (36%), Positives = 113/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+RM + L ++ ++R GR + S+LD + V+ YG PLNQ+A++T+ E R++ Sbjct: 6 VEKAKERMSQSHQSLGREFGSIRAGRANASLLDRIYVQYYGVDTPLNQIASITIPEARVM 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK + +E ++ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LITPFDKSSLKDIEHALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD MD KK K+ + +ED + LE +IQK+TD +K+ID K+KE++ Sbjct: 126 VAIRNIRRDAMDEAKKQEKAKEITEDELKGLEKEIQKVTDDAVKHIDEMTAHKEKELLEV 185 >gi|257126427|ref|YP_003164541.1| ribosome recycling factor [Leptotrichia buccalis C-1013-b] gi|257050366|gb|ACV39550.1| ribosome recycling factor [Leptotrichia buccalis C-1013-b] Length = 185 Score = 233 bits (596), Expect = 8e-60, Method: Composition-based stats. Identities = 71/180 (39%), Positives = 115/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ ++++M ++ K +R GR S SMLD V VEAYGS PLNQV V+ E R+L Sbjct: 6 LKEVEEKMQKSVENTKTKFSHVRAGRASVSMLDGVTVEAYGSPTPLNQVGTVSAPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK ++ ++E+ I ++NLG NP +G+++R+ VPE TE+RR VK+ AE+ K Sbjct: 66 VIDPWDKSLIPAIEKTILQANLGFNPSNDGKIIRLVVPELTEDRRKEYVKMVKKEAEEGK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RN+R++ + L+K K+ + +ED + S E +QK TD I +D +K+KE++ Sbjct: 126 VAIRNVRKEVNNKLRKLEKNSEITEDELKSSEEKVQKSTDKFIAQVDEALNKKEKELLTV 185 >gi|332982468|ref|YP_004463909.1| ribosome recycling factor [Mahella australiensis 50-1 BON] gi|332700146|gb|AEE97087.1| ribosome recycling factor [Mahella australiensis 50-1 BON] Length = 186 Score = 233 bits (596), Expect = 8e-60, Method: Composition-based stats. Identities = 82/175 (46%), Positives = 125/175 (71%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 + +M I LKK++ TLRTGR +P +LD + V+ YG+ P+ Q+ N+T EPR+LV++ Sbjct: 10 TEQKMNKVIDVLKKELSTLRTGRANPQILDNITVDYYGASTPITQLGNITSPEPRLLVIA 69 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 WD +++ +E+ I +S+LG+NP +G+V+R+ +PE TEERR LVK+A E++K++V Sbjct: 70 PWDPKIIKDMEKAIQKSDLGINPSNDGKVIRLVIPELTEERRKELVKLARKMGEEAKVAV 129 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RNIRR+ +DHLKK +K G SED ++DIQK+TD+ I IDS E+K+K+IM Sbjct: 130 RNIRREAIDHLKKQKKDGDISEDEEKRQQDDIQKLTDNKINEIDSIIEQKEKDIM 184 >gi|152991633|ref|YP_001357354.1| ribosome recycling factor [Sulfurovum sp. NBC37-1] gi|226703269|sp|A6Q688|RRF_SULNB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|151423494|dbj|BAF70997.1| ribosome recycling factor Frr [Sulfurovum sp. NBC37-1] Length = 185 Score = 233 bits (596), Expect = 8e-60, Method: Composition-based stats. Identities = 65/185 (35%), Positives = 117/185 (63%), Gaps = 2/185 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 N++ ++ K+ M ++ LK+D +LRTG+V+ +++D +KV+ YG+ PLNQV +V Sbjct: 3 NEIF--EHTKENMDKSLEALKRDFASLRTGKVTTNIVDNIKVDYYGTPTPLNQVGSVIAT 60 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 + + ++ W+K +++ +ER I E+N+G+NP +G +++ P T E+R +VK A A Sbjct: 61 DATTISITPWEKNLLSDIERAIQEANIGVNPNNDGDFIKLFFPPMTSEQRQEIVKQAKAM 120 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 AE +++++RNIR+D + +KK K + SED ++IQKITD I +D F+ K+ Sbjct: 121 AENARVAIRNIRKDANNKIKKLEKDKEISEDESKRAHDEIQKITDDHIGMVDELFKAKEA 180 Query: 182 EIMHF 186 +I+ Sbjct: 181 DILKV 185 >gi|269955983|ref|YP_003325772.1| ribosome recycling factor [Xylanimonas cellulosilytica DSM 15894] gi|269304664|gb|ACZ30214.1| ribosome recycling factor [Xylanimonas cellulosilytica DSM 15894] Length = 185 Score = 233 bits (596), Expect = 8e-60, Method: Composition-based stats. Identities = 64/180 (35%), Positives = 106/180 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M I K+D +RTGR + M + V+ YG+ PL Q+A+ + E R + Sbjct: 6 LFEAEEKMDKAIEVAKEDFAGIRTGRANAGMFSKIVVDYYGAPTPLQQLASFNIPEARSV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +DK +A++E+ + +S+LG+NP +G +RI +P TEERR VK+A AE ++ Sbjct: 66 LISPFDKSSMAAIEKALRDSDLGVNPSNDGNAIRIVLPALTEERRRDYVKLAKTKAEDAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I+VRNIRR D L K K G+A ED V+ E +++ +T + +D K+ E++ Sbjct: 126 ITVRNIRRKAKDVLDKLVKDGEAGEDEVSRAEKELEALTKRHVDQVDQLLAGKESELLEV 185 >gi|118472629|ref|YP_886878.1| ribosome recycling factor [Mycobacterium smegmatis str. MC2 155] gi|166230801|sp|A0QVE0|RRF_MYCS2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|118173916|gb|ABK74812.1| ribosome recycling factor [Mycobacterium smegmatis str. MC2 155] Length = 185 Score = 233 bits (596), Expect = 8e-60, Method: Composition-based stats. Identities = 63/180 (35%), Positives = 112/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++M +S + ++ ++RTGR +P M + + ++ YGS P+ Q+A++ V E R++ Sbjct: 6 LFDAEEKMEKAVSVARDELGSIRTGRANPGMFNRINIDYYGSMTPITQLASINVPEARLV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ ++ + ++E I S+LG+NP +G ++R+ +P+ TEERR LVK A + E +K Sbjct: 66 VIKPYEASQLRAIEDAIRNSDLGVNPSNDGNIIRVAIPQLTEERRRELVKQAKSKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +SVRNIRR M+ L + +K G+A ED V+ E D+ K T + ID + K+ E++ Sbjct: 126 VSVRNIRRKAMEELSRIKKDGEAGEDEVSRAEKDLDKSTHTYTAQIDELVKHKESELLEV 185 >gi|225021116|ref|ZP_03710308.1| hypothetical protein CORMATOL_01128 [Corynebacterium matruchotii ATCC 33806] gi|224946116|gb|EEG27325.1| hypothetical protein CORMATOL_01128 [Corynebacterium matruchotii ATCC 33806] Length = 205 Score = 233 bits (595), Expect = 8e-60, Method: Composition-based stats. Identities = 69/180 (38%), Positives = 113/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++ M T+ ++++ T+RTGR +P+M + V + YG P+ Q+A V+V E RM+ Sbjct: 26 LLECEEHMSTTVDRTREELTTIRTGRANPAMFNGVVADYYGVPTPITQMATVSVPEARMM 85 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ ++ M+ +E I S+LG+NP +GQVLR+ +P+ TEERR +VK+A + E K Sbjct: 86 LIKPYEMSMMGVIENAIRNSDLGVNPTNDGQVLRVTIPQLTEERRRDMVKLAKSKGEDGK 145 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RN+RR GMD LKK K G A ED V + E ++ K+T + +D ++K+ E+M Sbjct: 146 IAIRNVRRKGMDQLKKIHKDGDAGEDEVQAAEKELDKVTQKYVAAVDEVVQKKEAELMEV 205 >gi|84686917|ref|ZP_01014801.1| ribosome recycling factor [Maritimibacter alkaliphilus HTCC2654] gi|84665114|gb|EAQ11594.1| ribosome recycling factor [Rhodobacterales bacterium HTCC2654] Length = 188 Score = 233 bits (595), Expect = 8e-60, Method: Composition-based stats. Identities = 83/182 (45%), Positives = 124/182 (68%), Gaps = 1/182 (0%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 ID+ +++ RM I L+ ++ +LRTGR S +ML+ V VEAYG P+NQV V V EPR Sbjct: 8 IDIDDLERRMEGAIGALRTELASLRTGRASAAMLEPVHVEAYGQRTPINQVGTVNVPEPR 67 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ ++VWDK +V +VE+ I ES LG+NP G ++ +P+PE EERR L +VA YAE Sbjct: 68 MVTINVWDKSLVNAVEKAIMESGLGINPQTNGTIIMLPIPELNEERRKELARVAAQYAES 127 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++++RN+RRDGM+ LKK++ +G SED +++Q++TD I N+D E K++EIM Sbjct: 128 ARVAIRNVRRDGMEQLKKAKAAG-MSEDDNKIWHDEVQELTDKYIGNVDKTLETKQEEIM 186 Query: 185 HF 186 Sbjct: 187 QV 188 >gi|319786511|ref|YP_004145986.1| ribosome recycling factor [Pseudoxanthomonas suwonensis 11-1] gi|317465023|gb|ADV26755.1| ribosome recycling factor [Pseudoxanthomonas suwonensis 11-1] Length = 185 Score = 233 bits (595), Expect = 8e-60, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ + RM +I L+ +++ +RTGR S ++D ++V AYGS VPL+QVA V+V + R LV Sbjct: 7 QDAQARMAKSIEALRHNLVKVRTGRASTGLVDTIRVSAYGSDVPLSQVAAVSVSDARSLV 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++ WDK MV +E+ I S+LGL P G +R+ +P TEERR L KV + E +K+ Sbjct: 67 ITPWDKSMVGPIEKAILASDLGLTPNTAGTTIRLNLPALTEERRRDLAKVVASEGEDAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD +K K + +ED V E+DIQKITD IK++D + K++E+M Sbjct: 127 AIRNVRRDANQQVKDLLKEKQVTEDDVRRAEDDIQKITDKAIKDVDEVVKAKEQELMAV 185 >gi|308233714|ref|ZP_07664451.1| ribosome recycling factor [Atopobium vaginae DSM 15829] gi|328944064|ref|ZP_08241529.1| ribosome recycling factor [Atopobium vaginae DSM 15829] gi|327492033|gb|EGF23807.1| ribosome recycling factor [Atopobium vaginae DSM 15829] Length = 181 Score = 233 bits (595), Expect = 8e-60, Method: Composition-based stats. Identities = 69/179 (38%), Positives = 104/179 (58%), Gaps = 3/179 (1%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + M I LK + +RTGR +P +LD ++V+ YG P+ Q+A + V EP MLV Sbjct: 6 DQAQKHMNKCIDALKNNFSKVRTGRANPQVLDGIRVDYYGQPTPIVQLAGIKVPEPSMLV 65 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V WDK + ++E+ I S+LG+ P +G +R+P P+ TEERR LVK YAE +K+ Sbjct: 66 VEPWDKSSLKAIEKAIESSDLGITPSNDGTSIRLPFPKPTEERRRELVKECKQYAEDAKV 125 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN RRD + K+ + + +ED V + IQK+TD + ID + K +E+M Sbjct: 126 AVRNARRDANN---KAERDEELNEDDVNREKKAIQKLTDEFVAKIDEMLKTKSQEVMEI 181 >gi|325281134|ref|YP_004253676.1| Ribosome-recycling factor [Odoribacter splanchnicus DSM 20712] gi|324312943|gb|ADY33496.1| Ribosome-recycling factor [Odoribacter splanchnicus DSM 20712] Length = 187 Score = 233 bits (595), Expect = 9e-60, Method: Composition-based stats. Identities = 76/188 (40%), Positives = 114/188 (60%), Gaps = 3/188 (1%) Query: 1 MNQVIDL--QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 MN+ + + K++M + + L+ ++ +R G+ +P +L+ V V+ YGS PL+QVAN+ Sbjct: 1 MNEEVKMYMDEAKEQMQNALVHLENELAKIRAGKANPKILNDVLVDYYGSPTPLSQVANI 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 T +PR + V W+K M+ +++ I +NLG NP G+V+RI VP T ERR LVK + Sbjct: 61 TAPDPRTIAVQPWEKNMLGPIQKAIMNANLGFNPDNNGEVVRINVPPLTAERRKELVKQS 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 E +K+S+RN RRD +D KK KSG ED E+++QKITDS K ID Sbjct: 121 KGVGETAKVSIRNARRDAIDEFKKMVKSG-LPEDEAKDAEDEVQKITDSYNKKIDEILTA 179 Query: 179 KKKEIMHF 186 K+K+IM Sbjct: 180 KEKDIMTI 187 >gi|134094563|ref|YP_001099638.1| ribosome recycling factor [Herminiimonas arsenicoxydans] gi|166230793|sp|A4G4S4|RRF_HERAR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|133738466|emb|CAL61511.1| Ribosome recycling factor (Ribosome-releasing factor) (RRF) [Herminiimonas arsenicoxydans] Length = 186 Score = 233 bits (595), Expect = 9e-60, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + +M +I LK D+ +RTGR +LD V VE YG+ L QVANVT+++ R + Sbjct: 8 KTADQKMQKSIETLKADLAKVRTGRAHTGILDHVMVEYYGNPTNLTQVANVTLIDARTIG 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V ++K+MVA VE+ I +++LGLNP +G+++R+P P TEERR +VK+ + AE +KI Sbjct: 68 VQPFEKKMVAVVEKAIRDADLGLNPATQGEMIRVPTPPLTEERRKEMVKLVKSEAEDAKI 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD + LKK K SED +++IQK+TD + +D EK+KE++ Sbjct: 128 AIRNIRRDANETLKKLLKDKACSEDDERRAQDEIQKLTDKFVLEVDKLVVEKEKEVLTV 186 >gi|311898628|dbj|BAJ31036.1| putative ribosome recycling factor [Kitasatospora setae KM-6054] Length = 185 Score = 233 bits (595), Expect = 9e-60, Method: Composition-based stats. Identities = 62/180 (34%), Positives = 103/180 (57%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K D+ +RTGR P+M + E YG+ P+NQ+A+ +V EPRM Sbjct: 6 LLEAEEKMEKAVGVAKDDLAAIRTGRAHPAMFAKIVAEYYGALTPINQLASFSVPEPRMA 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + ++E I +S+LG+NP +G V+R+ +P+ TEERR +K A E +K Sbjct: 66 MVTPFDKTALKAIETAIRDSDLGVNPSNDGSVIRVVLPQLTEERRREYIKQARGKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +SVR+IRR D + K K + ED E ++ +T + ID + K+ E++ Sbjct: 126 VSVRSIRRKAKDAIDKLVKDKEIGEDDGRRGEKELDDLTAKFVAQIDELLKHKEAELLEV 185 >gi|84516072|ref|ZP_01003432.1| ribosome recycling factor [Loktanella vestfoldensis SKA53] gi|84509768|gb|EAQ06225.1| ribosome recycling factor [Loktanella vestfoldensis SKA53] Length = 187 Score = 233 bits (595), Expect = 9e-60, Method: Composition-based stats. Identities = 84/182 (46%), Positives = 122/182 (67%), Gaps = 1/182 (0%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 +D ++ RM I+ L+ ++ +LRTGR S SML+ + V+AYGS P+NQV V V EPR Sbjct: 7 LDTDDLARRMDGAIANLRVELASLRTGRASGSMLEPIMVDAYGSPTPINQVGTVNVPEPR 66 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ ++VWDK +V VE+ I +S LG+NP + G ++ +P+PE EERR L KVA YAE+ Sbjct: 67 MVTINVWDKALVGKVEKAIRDSGLGINPQLNGTIIMLPIPELNEERRRELTKVAGNYAEQ 126 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++S+RN+RRDGMD +KK++ G SED E +Q+ITD+ K +D E K+ EIM Sbjct: 127 ARVSIRNLRRDGMDQIKKAKSDG-LSEDDQKFWETTVQEITDAHTKLVDETLETKQAEIM 185 Query: 185 HF 186 Sbjct: 186 QV 187 >gi|254519196|ref|ZP_05131252.1| ribosome recycling factor [Clostridium sp. 7_2_43FAA] gi|226912945|gb|EEH98146.1| ribosome recycling factor [Clostridium sp. 7_2_43FAA] Length = 185 Score = 233 bits (595), Expect = 9e-60, Method: Composition-based stats. Identities = 80/180 (44%), Positives = 123/180 (68%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q +++M TIS LK D+ T+R GR +P+MLD ++V+ YGS PLNQVAN++ EPR+L Sbjct: 6 IQKAEEKMKKTISVLKSDLSTMRAGRANPTMLDRIQVDYYGSPCPLNQVANISAPEPRVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+S W+K ++ +E+ I S+LG+NP +G V+R+ VPE TEE R LVK E++K Sbjct: 66 VISPWEKSLMKEIEKAILTSDLGINPSNDGSVIRLVVPELTEETRRNLVKNVKKTGEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++R+IRR+ D +K +K G+ +ED + + E +QKI DS +K +D+ K+KEIM Sbjct: 126 VALRSIRREANDKIKALKKDGEITEDELKNSEEKVQKIIDSFVKEVDTIIVAKEKEIMSI 185 >gi|289578399|ref|YP_003477026.1| ribosome recycling factor [Thermoanaerobacter italicus Ab9] gi|297544675|ref|YP_003676977.1| ribosome recycling factor [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528112|gb|ADD02464.1| ribosome recycling factor [Thermoanaerobacter italicus Ab9] gi|296842450|gb|ADH60966.1| ribosome recycling factor [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 184 Score = 233 bits (595), Expect = 9e-60, Method: Composition-based stats. Identities = 80/180 (44%), Positives = 122/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ +++M ++S LK ++ +R GR +P++LD + V+ YG+ PLN++A +T E R+L Sbjct: 5 LKASEEKMQKSLSVLKSELAAIRAGRANPALLDRIMVDYYGTPTPLNRLATITAPEARVL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV WD ++ +E+ I +S+LG+NP+ +G+VLR+ PE TEERR LVK+ + AE++K Sbjct: 65 VVQPWDVSKISDIEKAIQKSDLGINPVSDGKVLRLVFPELTEERRKELVKLVYKKAEEAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VR IRRD D +KK K+G+ SED E +IQK+TD IK ID E K+KEIM Sbjct: 125 VAVRQIRRDANDTVKKMEKNGEISEDERKKREEEIQKLTDKYIKEIDKIAETKEKEIMEI 184 >gi|15924249|ref|NP_371783.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus Mu50] gi|15926842|ref|NP_374375.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus N315] gi|21282871|ref|NP_645959.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus MW2] gi|49483422|ref|YP_040646.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus MRSA252] gi|49486098|ref|YP_043319.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus MSSA476] gi|57651829|ref|YP_186135.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus COL] gi|82750860|ref|YP_416601.1| ribosome recycling factor [Staphylococcus aureus RF122] gi|87160153|ref|YP_493849.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194969|ref|YP_499769.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267749|ref|YP_001246692.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus JH9] gi|150393808|ref|YP_001316483.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus JH1] gi|151221381|ref|YP_001332203.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus str. Newman] gi|156979580|ref|YP_001441839.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus Mu3] gi|221142493|ref|ZP_03566986.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253315615|ref|ZP_04838828.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253731878|ref|ZP_04866043.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733503|ref|ZP_04867668.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus TCH130] gi|255006046|ref|ZP_05144647.2| ribosome recycling factor [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257425313|ref|ZP_05601738.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus 55/2053] gi|257427974|ref|ZP_05604372.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus 65-1322] gi|257430607|ref|ZP_05606989.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus 68-397] gi|257433367|ref|ZP_05609725.1| ribosome-recycling factor [Staphylococcus aureus subsp. aureus E1410] gi|257436209|ref|ZP_05612256.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus M876] gi|257795685|ref|ZP_05644664.1| ribosome recycling factor [Staphylococcus aureus A9781] gi|258416088|ref|ZP_05682356.1| ribosome recycling factor [Staphylococcus aureus A9763] gi|258421671|ref|ZP_05684595.1| ribosome recycling factor [Staphylococcus aureus A9719] gi|258434827|ref|ZP_05688901.1| ribosome recycling factor [Staphylococcus aureus A9299] gi|258444597|ref|ZP_05692926.1| ribosome-recycling factor [Staphylococcus aureus A8115] gi|258447570|ref|ZP_05695714.1| ribosome recycling factor [Staphylococcus aureus A6300] gi|258449412|ref|ZP_05697515.1| ribosome-recycling factor [Staphylococcus aureus A6224] gi|258452558|ref|ZP_05700564.1| ribosome recycling factor [Staphylococcus aureus A5948] gi|258454791|ref|ZP_05702755.1| ribosome recycling factor [Staphylococcus aureus A5937] gi|262051321|ref|ZP_06023544.1| ribosome recycling factor [Staphylococcus aureus 930918-3] gi|269202876|ref|YP_003282145.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus ED98] gi|282892747|ref|ZP_06300982.1| ribosome recycling factor [Staphylococcus aureus A8117] gi|282903814|ref|ZP_06311702.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus C160] gi|282905577|ref|ZP_06313432.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus Btn1260] gi|282908552|ref|ZP_06316382.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910831|ref|ZP_06318634.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus WBG10049] gi|282914036|ref|ZP_06321823.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus M899] gi|282916519|ref|ZP_06324277.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus D139] gi|282918958|ref|ZP_06326693.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus C427] gi|282920503|ref|ZP_06328224.1| ribosome recycling factor [Staphylococcus aureus A9765] gi|282924081|ref|ZP_06331757.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus C101] gi|282927601|ref|ZP_06335217.1| ribosome recycling factor [Staphylococcus aureus A10102] gi|283770323|ref|ZP_06343215.1| ribosome-recycling factor [Staphylococcus aureus subsp. aureus H19] gi|283958002|ref|ZP_06375453.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus A017934/97] gi|284024252|ref|ZP_06378650.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus 132] gi|293501068|ref|ZP_06666919.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus 58-424] gi|293510030|ref|ZP_06668738.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus M809] gi|293526616|ref|ZP_06671301.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus M1015] gi|294848255|ref|ZP_06789002.1| ribosome recycling factor [Staphylococcus aureus A9754] gi|295406196|ref|ZP_06816003.1| ribosome recycling factor [Staphylococcus aureus A8819] gi|295427746|ref|ZP_06820378.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus EMRSA16] gi|296274817|ref|ZP_06857324.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus MR1] gi|297208095|ref|ZP_06924526.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297244424|ref|ZP_06928307.1| ribosome recycling factor [Staphylococcus aureus A8796] gi|297591296|ref|ZP_06949934.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus MN8] gi|300912176|ref|ZP_07129619.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus TCH70] gi|304381177|ref|ZP_07363830.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|56749387|sp|Q6G9V4|RRF_STAAS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|56749416|sp|Q6GHH6|RRF_STAAR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|56753990|sp|P68785|RRF_STAAM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|56753991|sp|P68786|RRF_STAAU RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|56753994|sp|P68787|RRF_STAAW RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|56753995|sp|P99130|RRF_STAAN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|62900781|sp|Q5HGH2|RRF_STAAC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|122539692|sp|Q2FZ21|RRF_STAA8 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|123486185|sp|Q2FHH9|RRF_STAA3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|123549062|sp|Q2YXK9|RRF_STAAB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166231513|sp|A7X1N7|RRF_STAA1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|172049020|sp|A6QGF9|RRF_STAAE RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|189044079|sp|A6U178|RRF_STAA2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|189044080|sp|A5ISE3|RRF_STAA9 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|2645713|gb|AAB87473.1| ribosome recycling factor [Staphylococcus aureus] gi|13701059|dbj|BAB42354.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus N315] gi|14247029|dbj|BAB57421.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus Mu50] gi|21204310|dbj|BAB95007.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus MW2] gi|49241551|emb|CAG40237.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus MRSA252] gi|49244541|emb|CAG42970.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus MSSA476] gi|57286015|gb|AAW38109.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus COL] gi|82656391|emb|CAI80810.1| ribosome recycling factor [Staphylococcus aureus RF122] gi|87126127|gb|ABD20641.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202527|gb|ABD30337.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740818|gb|ABQ49116.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus JH9] gi|149946260|gb|ABR52196.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus JH1] gi|150374181|dbj|BAF67441.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus str. Newman] gi|156721715|dbj|BAF78132.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus Mu3] gi|253724288|gb|EES93017.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728557|gb|EES97286.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus TCH130] gi|257271770|gb|EEV03908.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus 55/2053] gi|257274815|gb|EEV06302.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus 65-1322] gi|257278735|gb|EEV09354.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus 68-397] gi|257281460|gb|EEV11597.1| ribosome-recycling factor [Staphylococcus aureus subsp. aureus E1410] gi|257284491|gb|EEV14611.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus M876] gi|257789657|gb|EEV27997.1| ribosome recycling factor [Staphylococcus aureus A9781] gi|257839236|gb|EEV63712.1| ribosome recycling factor [Staphylococcus aureus A9763] gi|257842357|gb|EEV66782.1| ribosome recycling factor [Staphylococcus aureus A9719] gi|257849188|gb|EEV73170.1| ribosome recycling factor [Staphylococcus aureus A9299] gi|257850090|gb|EEV74043.1| ribosome-recycling factor [Staphylococcus aureus A8115] gi|257853761|gb|EEV76720.1| ribosome recycling factor [Staphylococcus aureus A6300] gi|257857400|gb|EEV80298.1| ribosome-recycling factor [Staphylococcus aureus A6224] gi|257859776|gb|EEV82618.1| ribosome recycling factor [Staphylococcus aureus A5948] gi|257863174|gb|EEV85938.1| ribosome recycling factor [Staphylococcus aureus A5937] gi|259160696|gb|EEW45717.1| ribosome recycling factor [Staphylococcus aureus 930918-3] gi|262075166|gb|ACY11139.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus ED98] gi|269940750|emb|CBI49132.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus TW20] gi|282314053|gb|EFB44445.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus C101] gi|282316768|gb|EFB47142.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus C427] gi|282319006|gb|EFB49358.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus D139] gi|282322104|gb|EFB52428.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus M899] gi|282325436|gb|EFB55745.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus WBG10049] gi|282327614|gb|EFB57897.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330869|gb|EFB60383.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus Btn1260] gi|282590604|gb|EFB95681.1| ribosome recycling factor [Staphylococcus aureus A10102] gi|282594165|gb|EFB99152.1| ribosome recycling factor [Staphylococcus aureus A9765] gi|282595432|gb|EFC00396.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus C160] gi|282764744|gb|EFC04869.1| ribosome recycling factor [Staphylococcus aureus A8117] gi|283460470|gb|EFC07560.1| ribosome-recycling factor [Staphylococcus aureus subsp. aureus H19] gi|283470474|emb|CAQ49685.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus ST398] gi|283790151|gb|EFC28968.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus A017934/97] gi|285816941|gb|ADC37428.1| Ribosome recycling factor [Staphylococcus aureus 04-02981] gi|290920688|gb|EFD97751.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus M1015] gi|291096073|gb|EFE26334.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus 58-424] gi|291466974|gb|EFF09492.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus M809] gi|294825055|gb|EFG41477.1| ribosome recycling factor [Staphylococcus aureus A9754] gi|294968784|gb|EFG44806.1| ribosome recycling factor [Staphylococcus aureus A8819] gi|295128104|gb|EFG57738.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus EMRSA16] gi|296887338|gb|EFH26240.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297178454|gb|EFH37700.1| ribosome recycling factor [Staphylococcus aureus A8796] gi|297576182|gb|EFH94898.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus MN8] gi|298694551|gb|ADI97773.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus ED133] gi|300886422|gb|EFK81624.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus TCH70] gi|302332865|gb|ADL23058.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus JKD6159] gi|302751082|gb|ADL65259.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340160|gb|EFM06101.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312438362|gb|ADQ77433.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus TCH60] gi|315131053|gb|EFT87037.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus CGS03] gi|315194147|gb|EFU24540.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus CGS00] gi|315198501|gb|EFU28830.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus CGS01] gi|320140924|gb|EFW32771.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus MRSA131] gi|320144360|gb|EFW36126.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus MRSA177] gi|323441038|gb|EGA98745.1| ribosome recycling factor [Staphylococcus aureus O11] gi|323443907|gb|EGB01518.1| ribosome recycling factor [Staphylococcus aureus O46] gi|329313929|gb|AEB88342.1| Ribosome-recycling factor [Staphylococcus aureus subsp. aureus T0131] gi|329727824|gb|EGG64275.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus 21189] gi|329733642|gb|EGG69970.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus 21193] Length = 184 Score = 233 bits (595), Expect = 9e-60, Method: Composition-based stats. Identities = 79/186 (42%), Positives = 119/186 (63%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ +I+ K RM +I L +++ + GR + ++L+ V V+ YG+ P+ Q+A++ V Sbjct: 1 MSDIIN--ETKSRMQKSIESLSRELANISAGRANSNLLNGVTVDYYGAPTPVQQLASINV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R+LV+S +DK VA +E+ I +NLG+NP +G+V+RI VP TEERR VK Sbjct: 59 PEARLLVISPYDKTSVADIEKAIIAANLGVNPTSDGEVIRIAVPALTEERRKERVKDVKK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E++K+SVRNIRRD D LKK K+G +ED + S D+QK TD++IK ID +K+ Sbjct: 119 IGEEAKVSVRNIRRDMNDQLKKDEKNGDITEDELRSGTEDVQKATDNSIKEIDQMIADKE 178 Query: 181 KEIMHF 186 K+IM Sbjct: 179 KDIMSV 184 >gi|227504802|ref|ZP_03934851.1| ribosome recycling factor [Corynebacterium striatum ATCC 6940] gi|227198652|gb|EEI78700.1| ribosome recycling factor [Corynebacterium striatum ATCC 6940] Length = 185 Score = 233 bits (595), Expect = 9e-60, Method: Composition-based stats. Identities = 72/186 (38%), Positives = 114/186 (61%), Gaps = 1/186 (0%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M I L ++ M ++ ++ ++T+RTGR +P+M + + E YG+ P+ Q+A ++V Sbjct: 1 MIDEIQL-EAEEHMTASVEHTREQLITIRTGRANPAMFNGLVAEYYGAPTPITQMATISV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPRM+++ +++ M+ +E I S+LG+NP +GQVLR+ +P+ TEERR LVK A Sbjct: 60 PEPRMMLIKPYEQSMIHEIENAIRNSDLGVNPTNDGQVLRVTIPQLTEERRRDLVKQAKG 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E KI++RNIRR MD LKK +K G A ED V + E +++K T I +D K+ Sbjct: 120 KGEDGKIAIRNIRRKAMDQLKKLQKDGDAGEDEVVAAEKEMEKTTAGYIDQVDKLVANKE 179 Query: 181 KEIMHF 186 E+M Sbjct: 180 NELMEV 185 >gi|197303245|ref|ZP_03168286.1| hypothetical protein RUMLAC_01968 [Ruminococcus lactaris ATCC 29176] gi|197297671|gb|EDY32230.1| hypothetical protein RUMLAC_01968 [Ruminococcus lactaris ATCC 29176] Length = 183 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 78/186 (41%), Positives = 116/186 (62%), Gaps = 3/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 MN+ I ++ +M TI+ L ++ T+R GR +P +LD + V+ YGS P+ QVANV+V Sbjct: 1 MNEKIAAYDV--KMTKTINNLDGELATIRAGRANPHVLDKIAVDYYGSPTPIQQVANVSV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E RM+ + W+K M+ ++E+ I S++G+NP +G +R+ PE TE+RR L K Sbjct: 59 PEARMIQIQPWEKSMLKAIEKAILTSDIGINPTNDGTSIRLVFPELTEDRRKELAKDVKK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E++K++VRNIRRDG KK K + SED + LE+++QKITD I +D E K Sbjct: 119 KGEEAKVAVRNIRRDGNVAFKKL-KGTEISEDEIKDLEDELQKITDKYIAQVDKMVEAKS 177 Query: 181 KEIMHF 186 KEIM Sbjct: 178 KEIMTV 183 >gi|29829166|ref|NP_823800.1| ribosome recycling factor [Streptomyces avermitilis MA-4680] gi|34924903|sp|Q82JY0|RRF_STRAW RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|29606272|dbj|BAC70335.1| putative ribosome recycling factor [Streptomyces avermitilis MA-4680] Length = 185 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 61/180 (33%), Positives = 105/180 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K+D +RTGR P+M + + + YG+ P+NQ+A+ +V EPRM Sbjct: 6 LLEAEEKMEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMA 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV+ +DK + ++E+ I +S+LG+NP +G ++R+ PE TEERR +KVA E +K Sbjct: 66 VVTPFDKSALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEERRKDYIKVAKTKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+R++RR D + K K G+ ED E ++ T + +D + K+ E++ Sbjct: 126 VSIRSVRRKAKDAIDKLIKDGEVGEDEGRRAEKELDDTTAKYVAQVDELLKHKEAELLEV 185 >gi|119505669|ref|ZP_01627739.1| ribosome recycling factor [marine gamma proteobacterium HTCC2080] gi|119458481|gb|EAW39586.1| ribosome recycling factor [marine gamma proteobacterium HTCC2080] Length = 185 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 70/178 (39%), Positives = 105/178 (58%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 + RM + L +RTGR PS+LD ++ E YG+ PLNQ+AN+TV + R L V Sbjct: 8 ETEQRMVKALDALGHHFNKIRTGRAHPSLLDGIRAEYYGALTPLNQLANITVEDARTLAV 67 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 S +DK M ++E+ I +S+LGLNP G V+RIP+P TEE R +K A A AE ++S Sbjct: 68 SAFDKSMTPTIEKAIMKSDLGLNPATAGDVMRIPMPMLTEETRRGFIKQAKAEAEAGRVS 127 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +R+ RRD LK+ K + SED ++ IQK+TD+ + ++ K+ ++M Sbjct: 128 IRSARRDANGMLKELLKDKEISEDDERRAQDVIQKLTDNFVAKVEEALAAKETDLMEI 185 >gi|315144762|gb|EFT88778.1| ribosome recycling factor [Enterococcus faecalis TX2141] Length = 185 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 124/180 (68%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K++M L++++ +R GR + S+LD ++V+ YG+ P+NQ+A++ + E R+L Sbjct: 6 LATAKEKMTKAEESLRRELGQIRAGRANASLLDRIQVKYYGAPTPVNQLASINIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK +A +E+ I S++G++P +G V+R+ +P+ TEERR L K AE SK Sbjct: 66 MITPFDKNSIADIEKAIQMSDIGISPTNDGNVIRLVIPQLTEERRKELAKDVKKEAENSK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RRD MD LKK++K+G +ED + S E D+QK+TD +IKNID+ EK++E++ Sbjct: 126 VAVRNVRRDAMDELKKAQKNGDITEDELRSFEKDVQKLTDDSIKNIDAITAEKEQELLEV 185 >gi|238924132|ref|YP_002937648.1| ribosome recycling factor [Eubacterium rectale ATCC 33656] gi|259494542|sp|C4ZA73|RRF_EUBR3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238875807|gb|ACR75514.1| ribosome recycling factor [Eubacterium rectale ATCC 33656] gi|291524866|emb|CBK90453.1| ribosome recycling factor [Eubacterium rectale DSM 17629] gi|291529007|emb|CBK94593.1| ribosome recycling factor [Eubacterium rectale M104/1] Length = 184 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 72/180 (40%), Positives = 117/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +D+M T++ L+++ +R GR +P +LD ++V+ YG+ P+ VANV+V EPRM+ Sbjct: 5 LNPFQDKMEKTLNNLEEEYAGIRAGRANPHILDKLRVDYYGTPSPIQSVANVSVPEPRMI 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + W+ MV +E+ I+ S++G+NP +G+++R+ PE TEERR L K E++K Sbjct: 65 QIQPWEASMVKEIEKAINCSDIGINPTNDGKLIRLVFPELTEERRKDLAKDIKKKGEEAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD +D +KK+ K SED + LE+D QK+TD + +D+ + K KEI+ Sbjct: 125 VAVRNIRRDAIDSIKKTGKEEGISEDEIKGLEDDAQKLTDKFVAKVDAAVDAKCKEILTV 184 >gi|251810690|ref|ZP_04825163.1| peptide chain release factor RF4 [Staphylococcus epidermidis BCM-HMP0060] gi|282876309|ref|ZP_06285176.1| ribosome recycling factor [Staphylococcus epidermidis SK135] gi|251805850|gb|EES58507.1| peptide chain release factor RF4 [Staphylococcus epidermidis BCM-HMP0060] gi|281295334|gb|EFA87861.1| ribosome recycling factor [Staphylococcus epidermidis SK135] Length = 184 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 78/186 (41%), Positives = 121/186 (65%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ +I ++ K RM +I L +++ + GR + ++L+ V V+ YG+ P+ Q+A++ V Sbjct: 1 MSDII--KDTKSRMQKSIDNLSRELANISAGRANSNLLNGVTVDYYGAPTPVQQLASINV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R+LV+S +DK VA +E+ I +NLG+NP +G+V+RI VP TEERR LVK Sbjct: 59 PEARLLVISPYDKSSVADIEKAIIAANLGVNPTSDGEVIRISVPALTEERRKELVKEVKK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E +K+S+RNIRRD D LKK K+G +ED + S +D+QK TD++IK ID +K+ Sbjct: 119 IGEDAKVSIRNIRRDINDQLKKDEKNGDITEDDLRSQTDDVQKATDNSIKEIDQLVADKE 178 Query: 181 KEIMHF 186 K+I+ Sbjct: 179 KDIISV 184 >gi|325913951|ref|ZP_08176307.1| ribosome recycling factor [Xanthomonas vesicatoria ATCC 35937] gi|325539720|gb|EGD11360.1| ribosome recycling factor [Xanthomonas vesicatoria ATCC 35937] Length = 185 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 81/179 (45%), Positives = 119/179 (66%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ + RM +I L+ + T+RTGR SP++LD +KV+AYG+ PLNQVA+++V E R LV Sbjct: 7 QDAQTRMTKSIDALRHSLTTVRTGRASPALLDGIKVKAYGTDTPLNQVASISVSEGRSLV 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S++DK M+ VE+ ++ S+LGL P V G V+R+ +P TEERR L K H E SK+ Sbjct: 67 ISLFDKGMIKDVEKALYASDLGLTPTVVGTVIRLNLPPLTEERRKELSKSVHGEGEDSKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD +K K K +ED E+DIQK+TD IK++D + K++E+M Sbjct: 127 AIRNIRRDANQQVKDLLKDKKVTEDEARGAEDDIQKLTDKAIKDVDEVVKGKEQELMTV 185 >gi|323484222|ref|ZP_08089591.1| hypothetical protein HMPREF9474_01342 [Clostridium symbiosum WAL-14163] gi|323692104|ref|ZP_08106351.1| ribosome recycling factor [Clostridium symbiosum WAL-14673] gi|323402464|gb|EGA94793.1| hypothetical protein HMPREF9474_01342 [Clostridium symbiosum WAL-14163] gi|323503904|gb|EGB19719.1| ribosome recycling factor [Clostridium symbiosum WAL-14673] Length = 184 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 76/180 (42%), Positives = 113/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +++M + L + ++R GR +P +LD ++V+ YG+ PL QVANV+V EPRM+ Sbjct: 5 IKVYEEKMVKSYEVLLDEYASIRAGRANPHVLDKLRVDYYGTPTPLQQVANVSVPEPRMI 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ W+++++ +E+ I S+LG+NP +G +R+ PE TEERR L K E K Sbjct: 65 LIQPWERKLIKDIEKAILTSDLGINPNNDGNAIRLVFPELTEERRKELAKDVKKKGEGVK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD D +KK K+G+ SED A E IQKITD I+ ID E K KEIM Sbjct: 125 VAVRNIRRDANDAIKKMEKAGEISEDDQAEGEEKIQKITDKMIEKIDKAVEAKTKEIMTV 184 >gi|228477911|ref|ZP_04062525.1| ribosome recycling factor [Streptococcus salivarius SK126] gi|228250401|gb|EEK09641.1| ribosome recycling factor [Streptococcus salivarius SK126] Length = 185 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 78/180 (43%), Positives = 117/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+R + L ++ ++R GR + S+LD + VE YG+ PLNQ+A++TV E R+L Sbjct: 6 IEKAKERFAHSHESLAREFGSIRAGRANASLLDRITVEYYGAPTPLNQLASITVPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +DK +A +ER I+ES+LG+NP +G V+R+ +P TEE R L K E +K Sbjct: 66 LISPFDKGSIADIERAINESDLGINPANDGSVVRLVIPALTEETRKELAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIRRD MD KK K + +ED + +LE DIQK TD +K IDS EK+KE++ Sbjct: 126 IAIRNIRRDAMDEAKKQEKDKEITEDQLKALEKDIQKATDDAVKKIDSMTAEKEKELLTV 185 >gi|85859433|ref|YP_461635.1| ribosome recycling factor [Syntrophus aciditrophicus SB] gi|123516615|sp|Q2LTQ4|RRF_SYNAS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|85722524|gb|ABC77467.1| ribosome recycling factor [Syntrophus aciditrophicus SB] Length = 185 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 71/180 (39%), Positives = 109/180 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +K M + L+K +RTGR S S+LD +K + YG+ PLNQVA ++V E R + Sbjct: 6 FDELKQNMEKGLQALEKSFNKVRTGRASISLLDGIKADYYGTPTPLNQVATLSVPESRQI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S WD + ++E+ I +S+LGL P +G+V+RI +P TE RR LVKV AE+ K Sbjct: 66 LISPWDTSALNAIEKAIQKSDLGLVPNNDGKVIRISIPPLTEARRKELVKVVRKMAEECK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 + +RN RRD + K +K+ SED + ++ +QK+TDS I+ + +K+KEIM Sbjct: 126 VKLRNARRDANEEFKSMKKNNDISEDQMHDYQDQVQKMTDSYIEKSEDILVQKEKEIMEI 185 >gi|148241959|ref|YP_001227116.1| ribosome recycling factor [Synechococcus sp. RCC307] gi|147850269|emb|CAK27763.1| Ribosome recycling factor [Synechococcus sp. RCC307] Length = 179 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 63/178 (35%), Positives = 113/178 (63%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 +++D M ++ +++ T+RTGR + S+LD V VE YG+ PL +A ++ + + + + Sbjct: 2 DLEDSMSKSLEATQRNFNTIRTGRANTSLLDKVMVEYYGADTPLKSLATISAPDSQTIQI 61 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 +D +A +E+ I S+LGL P +G+++RI +P TEERR L K+A YAE+ K++ Sbjct: 62 QPFDMGSMALIEKAIGMSDLGLTPNNDGKLIRINIPPLTEERRKELCKIASKYAEEGKVA 121 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +RN+RRD +D +KK K G+ SED+ ++ +QK+TD I +++ +K+ +I+ Sbjct: 122 LRNVRRDAIDQIKKREKDGELSEDLSRDEQDKVQKVTDKFIADLEKLLADKEADILKV 179 >gi|325262932|ref|ZP_08129668.1| ribosome recycling factor [Clostridium sp. D5] gi|324032026|gb|EGB93305.1| ribosome recycling factor [Clostridium sp. D5] Length = 183 Score = 232 bits (594), Expect = 1e-59, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 113/180 (62%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ +++M T+ L ++ T+R GR +P +LD + V+ YG+ P+ QVANV+V E RM+ Sbjct: 5 LKVYEEKMTKTVENLNSELATIRAGRANPHVLDRLSVDYYGTPTPIQQVANVSVPEARMI 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + W+K ++ +E+ I+ S++G+NP +G +R+ PE TEERR LVK E +K Sbjct: 65 QIQPWEKSLLKEIEKAINMSDIGINPTNDGNTIRLVFPELTEERRKELVKDVKKKGEAAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRDG + KK K G+ SED + LE +QK+TD I +D E K KE++ Sbjct: 125 VAVRNIRRDGNEAFKKL-KGGEISEDGIKDLEESLQKMTDKFIAKVDGCVETKSKEVLTV 183 >gi|224034227|gb|ACN36189.1| unknown [Zea mays] Length = 264 Score = 232 bits (594), Expect = 1e-59, Method: Composition-based stats. Identities = 66/179 (36%), Positives = 107/179 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 K++M I ++ + T+RTGR +P+MLD ++VE YG+ V L +A ++ + L+ Sbjct: 86 DQAKEKMEKAIETVQANFNTVRTGRANPAMLDRIEVEYYGTPVNLKSIAQISTPDATSLL 145 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +DK + +E+ I +NLG+ P +G+V+R+ VP T +RR L K AE K+ Sbjct: 146 IQPYDKSSLKLIEKTIVAANLGVTPSNDGEVIRVTVPPLTSDRRKELSKTVAKLAEDGKV 205 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD + K K K SED V L D+QK+TD +K I+S ++K++E+M Sbjct: 206 AIRNIRRDAIKAYDKLEKEKKLSEDNVKDLSADLQKVTDEYMKKIESIQKQKEQELMKI 264 >gi|329727208|gb|EGG63664.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus 21172] Length = 184 Score = 232 bits (594), Expect = 1e-59, Method: Composition-based stats. Identities = 79/186 (42%), Positives = 119/186 (63%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ +I+ K RM +I L +++ + GR + ++L+ V V+ YG+ P+ Q+A++ V Sbjct: 1 MSDIIN--ETKSRMQKSIESLSRELANVSAGRANSNLLNGVTVDYYGAPTPVQQLASINV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R+LV+S +DK VA +E+ I +NLG+NP +G+V+RI VP TEERR VK Sbjct: 59 PEARLLVISPYDKTSVADIEKAIIAANLGVNPTSDGEVIRIAVPALTEERRKERVKDVKK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E++K+SVRNIRRD D LKK K+G +ED + S D+QK TD++IK ID +K+ Sbjct: 119 IGEEAKVSVRNIRRDMNDQLKKDEKNGDITEDELRSGTEDVQKATDNSIKEIDQMIADKE 178 Query: 181 KEIMHF 186 K+IM Sbjct: 179 KDIMSV 184 >gi|282897920|ref|ZP_06305915.1| Ribosome recycling factor [Raphidiopsis brookii D9] gi|281197064|gb|EFA71965.1| Ribosome recycling factor [Raphidiopsis brookii D9] Length = 182 Score = 232 bits (594), Expect = 1e-59, Method: Composition-based stats. Identities = 64/177 (36%), Positives = 107/177 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + M T+ ++ ++RTGR + S+LD V+V+ YGS PL ++N+T + + Sbjct: 3 LAEAESTMNKTVEATQRAFNSIRTGRANASLLDKVQVDYYGSPTPLKSLSNITTPDASTI 62 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D+ + VE+ I S++GL P +G V+R+ +P T +RR LVK+A YAE+ + Sbjct: 63 LIQPYDRSSLNIVEKAISLSDVGLTPSNDGSVVRLNIPPLTSDRRKELVKLAAKYAEEGR 122 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 + +RNIRRD +D ++K K+G+ SED ++ +QKIT ID EK+K+I Sbjct: 123 VGIRNIRRDALDSIRKQEKAGEISEDESRDQQDKLQKITGKYTAKIDELLAEKEKDI 179 >gi|145589629|ref|YP_001156226.1| ribosome recycling factor [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|189044064|sp|A4SYU8|RRF_POLSQ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|145048035|gb|ABP34662.1| ribosome recycling factor [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 186 Score = 232 bits (594), Expect = 1e-59, Method: Composition-based stats. Identities = 74/178 (41%), Positives = 115/178 (64%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 N +M ++ LK + +R+GR +P +L+ + V+ YG+ PL+QVA++ + + R + V Sbjct: 9 NTDQKMQKSLESLKSSLAKIRSGRANPGILEHIHVDYYGNPTPLSQVASLGLADARTINV 68 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 ++K MVA+VE+ I +S+LGLNP +G V+R+P+P TEERR L KV + E +KI+ Sbjct: 69 QPFEKTMVAAVEKAIRDSDLGLNPASQGTVIRVPMPALTEERRRELTKVVKSEGEDTKIA 128 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 VRN+RRD +HLK+ K + SED ++IQK+TD + +ID EK+KEIM Sbjct: 129 VRNLRRDANEHLKRLTKDKEISEDEERRATDEIQKMTDKAVVDIDKIIVEKEKEIMTV 186 >gi|256379903|ref|YP_003103563.1| ribosome recycling factor [Actinosynnema mirum DSM 43827] gi|255924206|gb|ACU39717.1| ribosome recycling factor [Actinosynnema mirum DSM 43827] Length = 185 Score = 232 bits (594), Expect = 1e-59, Method: Composition-based stats. Identities = 67/180 (37%), Positives = 111/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M ++ K+D+ T+RTGR +P+M + E YGS P+NQ+A++ V EPRM Sbjct: 6 LLEAEEKMEKAVTVSKEDLATVRTGRATPAMFSRIVAEYYGSMTPINQLASIAVPEPRMA 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV +DK + ++E+ I +S+LG+NP +G V+R+ P+ +EERR +VKVA E +K Sbjct: 66 VVKPFDKGSMTAIEKAIRDSDLGVNPSNDGTVIRVVFPQLSEERRREMVKVAKGKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+RNIRR + L + K G+ ED A E +++ +T I +D + K+ E++ Sbjct: 126 VSIRNIRRKAKEELDRLVKDGEVGEDDGARGEKELENVTHRYIAQVDEAMKNKEAELLEV 185 >gi|254283859|ref|ZP_04958827.1| ribosome recycling factor [gamma proteobacterium NOR51-B] gi|219680062|gb|EED36411.1| ribosome recycling factor [gamma proteobacterium NOR51-B] Length = 188 Score = 232 bits (594), Expect = 1e-59, Method: Composition-based stats. Identities = 71/179 (39%), Positives = 105/179 (58%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++RM ++ L + +RTGR PS+LD +++E YG+ PL Q+AN+ V + R L Sbjct: 10 SDAEERMEKSLEALDHNFNKIRTGRAHPSLLDSIRIEYYGADTPLIQLANINVEDARTLT 69 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +DK +E+ I S+LGLNP G V+RIP+P TEE R +K A + AE +++ Sbjct: 70 VVAFDKSTTPDIEKAIMRSDLGLNPSSAGDVIRIPMPMLTEETRRGYIKQARSEAESARV 129 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRN RRD M LK+ K + SED E IQK+TD + I+ EK+ ++M Sbjct: 130 SVRNARRDAMAMLKELEKEKEISEDEQRRGEEQIQKLTDGFVAKIEKKLSEKESDLMEI 188 >gi|304436535|ref|ZP_07396508.1| ribosome recycling factor [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370478|gb|EFM24130.1| ribosome recycling factor [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 185 Score = 232 bits (594), Expect = 1e-59, Method: Composition-based stats. Identities = 65/180 (36%), Positives = 112/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++ M I L+++ +LR GR +P++LD + V YG+ +NQ+A VTV EP M+ Sbjct: 6 LSKHEESMSKAIEALRREFSSLRAGRATPNLLDKIMVPYYGTPTSVNQLAKVTVPEPHMI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V++ W+K ++ +E I +S+LGL+P +G V+R+ +P+ T+ERR L+K E++K Sbjct: 66 VITPWEKSILHEIEIAISKSDLGLSPNSDGNVIRLAIPQPTQERRKELIKTVGKKTEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD + +KK K + +ED ++ +QK+ D +K +D K+KE+M Sbjct: 126 VALRNIRRDANEAIKKLEKDKEINEDESKRGQDSVQKLVDKFVKQMDEMRAAKEKEVMEI 185 >gi|229545182|ref|ZP_04433907.1| ribosome recycling factor [Enterococcus faecalis TX1322] gi|229309727|gb|EEN75714.1| ribosome recycling factor [Enterococcus faecalis TX1322] Length = 185 Score = 232 bits (594), Expect = 1e-59, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 123/180 (68%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K++M L++++ +R GR + S+LD ++VE YG+ P+NQ+A++ + E R+L Sbjct: 6 LATAKEKMTKAEESLRRELGQIRAGRANASLLDRIQVEYYGAPTPVNQLASINIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK +A +E+ I S++G++P +G V+R+ +P+ TEERR L K AE SK Sbjct: 66 MITPFDKNSIADIEKAIQMSDIGISPTNDGNVIRLVIPQLTEERRKELAKDVKKEAENSK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RRD MD LKK++K+ +ED + S E D+QK+TD +IKNID+ EK++E++ Sbjct: 126 VAVRNVRRDAMDELKKAQKNSDITEDELRSFEKDVQKLTDDSIKNIDAITAEKEQELLEV 185 >gi|331001980|ref|ZP_08325500.1| ribosome-recycling factor [Lachnospiraceae oral taxon 107 str. F0167] gi|330411776|gb|EGG91181.1| ribosome-recycling factor [Lachnospiraceae oral taxon 107 str. F0167] Length = 184 Score = 232 bits (594), Expect = 1e-59, Method: Composition-based stats. Identities = 74/181 (40%), Positives = 117/181 (64%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 ++ +++M +I L ++ +R GR +P +LD +KV+ YG+ P+ QV NV+V EPR+ Sbjct: 4 SIKKFEEKMNKSIDVLLEEYAAIRAGRANPHVLDRIKVDYYGTATPIQQVGNVSVPEPRI 63 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 + +S W+K ++ +E+ I+ S+LG+NP +G +R+ PE TEERR LVK E Sbjct: 64 IQISPWEKSLLKEIEKAINMSDLGINPTNDGSCIRLVFPELTEERRKELVKDVKKKGEAC 123 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 K+++RNIRRD +D +KK K+G+ +ED V EN IQK+TD I+ +D E+K KEI+ Sbjct: 124 KVAIRNIRRDAIDAVKKLEKAGEFTEDDVKDGENKIQKMTDKAIERVDKAIEDKSKEILT 183 Query: 186 F 186 Sbjct: 184 V 184 >gi|320547289|ref|ZP_08041581.1| ribosome recycling factor [Streptococcus equinus ATCC 9812] gi|320448093|gb|EFW88844.1| ribosome recycling factor [Streptococcus equinus ATCC 9812] Length = 185 Score = 232 bits (594), Expect = 1e-59, Method: Composition-based stats. Identities = 74/180 (41%), Positives = 117/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+R + S L ++ ++R GR + S+LD ++VE YG+ PLNQ+A++TV E R+L Sbjct: 6 IEKAKERFEQSHSSLAREFASIRAGRANASLLDRIQVEYYGAMTPLNQLASITVPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +DK + +E I+ S+LG+NP +G V+R+ +P TEE R AL K E +K Sbjct: 66 LISPFDKSSLKDIEHAINASDLGINPANDGSVIRLVIPALTEETRKALAKDVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD MD KK K+ + +ED + LE DIQK TD +K+ID+ K+KE++ Sbjct: 126 VAIRNIRRDAMDEAKKQEKAKEITEDELKVLEKDIQKATDEAVKHIDTMTANKEKELLEV 185 >gi|239815583|ref|YP_002944493.1| ribosome recycling factor [Variovorax paradoxus S110] gi|239802160|gb|ACS19227.1| ribosome recycling factor [Variovorax paradoxus S110] Length = 189 Score = 232 bits (594), Expect = 1e-59, Method: Composition-based stats. Identities = 74/174 (42%), Positives = 109/174 (62%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M +++ + ++ +RTGR + ++LD + VE YGS VPL+QVANV+VL+ R + V W+ Sbjct: 16 KMNQSLAAFQNNLTKIRTGRANSALLDSIHVEYYGSQVPLSQVANVSVLDSRTISVQPWE 75 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K M A +E+ I ES+LGLNP G ++R+P+P +EERR + K+ E +KI+ RN+ Sbjct: 76 KGMGAKIEKAIRESDLGLNPASMGDLIRVPLPAMSEERRKEMTKLVRNEGESAKIATRNL 135 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD + +KK K ASED E +IQK+TD I ID K+ EIM Sbjct: 136 RRDANESVKKLVKEKLASEDDQKRAEAEIQKVTDRHIAEIDRLVAAKEAEIMAV 189 >gi|331090948|ref|ZP_08339790.1| ribosome-recycling factor [Lachnospiraceae bacterium 2_1_46FAA] gi|330405170|gb|EGG84706.1| ribosome-recycling factor [Lachnospiraceae bacterium 2_1_46FAA] Length = 183 Score = 232 bits (594), Expect = 1e-59, Method: Composition-based stats. Identities = 77/186 (41%), Positives = 118/186 (63%), Gaps = 3/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 MN+ + + ++M + + L ++ T+R GR +P +LD + V+ YG P+ Q AN++V Sbjct: 1 MNERV--KAFDEKMTKSYNSLVGELATIRAGRANPHVLDKLTVDYYGVPTPIQQAANISV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPRM+ + W+K MV +E+ I S++G+NP +G V+R+ PE TEERR L K Sbjct: 59 PEPRMIQIQPWEKSMVKEIEKAILTSDIGINPTNDGSVIRLVFPELTEERRKELAKDVKK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E++K+++RNIRRDG D KK K + SED + LE+++QK+TD IK+ID EEK Sbjct: 119 KGEQAKVAIRNIRRDGNDTFKKL-KGTEVSEDEIKDLEDELQKLTDKYIKDIDKAVEEKS 177 Query: 181 KEIMHF 186 KE+M Sbjct: 178 KEVMTV 183 >gi|325290374|ref|YP_004266555.1| ribosome recycling factor [Syntrophobotulus glycolicus DSM 8271] gi|324965775|gb|ADY56554.1| ribosome recycling factor [Syntrophobotulus glycolicus DSM 8271] Length = 185 Score = 232 bits (594), Expect = 1e-59, Method: Composition-based stats. Identities = 75/180 (41%), Positives = 119/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +++M T+ L+K+ +T+R G + SMLD + V+ YG+ P+NQVAN++V EPRML Sbjct: 6 VKETEEKMKKTLEVLRKEFVTIRAGSANQSMLDKIMVDYYGTPTPINQVANISVPEPRML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ W+K M+ VE+ I +S+LG+NP+ +G V+R+ +P+ T +RR +V+ AE+++ Sbjct: 66 VIQPWEKTMIQPVEKAIMKSDLGINPVNDGSVVRLVIPQLTADRRTEIVRTVKKKAEEAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +SVRNIRRD + +KK K SED + IQK+TD IK+ID +K+KEI Sbjct: 126 VSVRNIRRDMNEEIKKMEKDKTVSEDESKKGQEKIQKLTDKYIKDIDDVLSKKEKEITEV 185 >gi|254492622|ref|ZP_05105793.1| ribosome recycling factor [Methylophaga thiooxidans DMS010] gi|224462143|gb|EEF78421.1| ribosome recycling factor [Methylophaga thiooxydans DMS010] Length = 185 Score = 232 bits (594), Expect = 1e-59, Method: Composition-based stats. Identities = 81/179 (45%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ DRM +++ L M +R GR S+LD ++V YGS VPL+QVANV V + R L Sbjct: 7 KDAADRMKKSVAALGTAMAKIRAGRAHTSLLDHLQVPYYGSDVPLSQVANVGVEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+ W+K+MV+ VE+ I S+LG+NP+ G +RIP+P TEERR LVKVA AE +++ Sbjct: 67 VTPWEKDMVSVVEKAIMTSDLGVNPMSAGMTIRIPIPPLTEERRRDLVKVAKGEAENARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD LK K + SED E ++QK+TD+TIK ID +K+ ++M Sbjct: 127 AVRNIRRDANSTLKDLLKEKEISEDEQRGAEEEVQKLTDATIKEIDQVLADKESDLMEV 185 >gi|332637898|ref|ZP_08416761.1| ribosome recycling factor [Weissella cibaria KACC 11862] Length = 185 Score = 232 bits (594), Expect = 1e-59, Method: Composition-based stats. Identities = 77/180 (42%), Positives = 118/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +RMG L++++ +R G +PS+L V E YG+ PLNQ+A++TV E R+L Sbjct: 6 LDSANERMGKAADVLRRELGNIRAGVANPSILRNVTAEYYGAPTPLNQLASITVPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK ++ +E+ I S+LGL P +G V+R+ +P TEE R +L K +EK+K Sbjct: 66 LITPFDKSILKDIEQAIFASDLGLTPANDGSVIRLVIPALTEETRKSLAKEVKGESEKAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RRD MD KK+ K+G SED LE+DIQK TD+ +KNID EK+KE++ Sbjct: 126 VAVRNVRRDAMDDAKKALKNGDMSEDEARKLEDDIQKATDAAVKNIDGIAAEKEKELLTI 185 >gi|289434595|ref|YP_003464467.1| hypothetical protein lse_1230 [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170839|emb|CBH27381.1| frr [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313638109|gb|EFS03374.1| ribosome recycling factor [Listeria seeligeri FSL S4-171] Length = 185 Score = 232 bits (594), Expect = 1e-59, Method: Composition-based stats. Identities = 74/180 (41%), Positives = 121/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K++M L + + T+R GR + S+LD + V+ YG+ P+NQ+A++++ E RML Sbjct: 6 LTKSKEKMEKAEQALTRQLGTIRAGRANASLLDRLTVDYYGAATPVNQMASISIPEARML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK ++ +E+ I +S+LGL P +G VLR+ +P+ TEERR LVK AE++K Sbjct: 66 LITPYDKTILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRR+ + LKK K+G +ED + S D+QK+TD +IKNID+ ++K+ EI+ Sbjct: 126 VAVRNIRREANEDLKKLEKNGDITEDDLRSYGEDVQKLTDESIKNIDNITKDKEAEILEV 185 >gi|153815802|ref|ZP_01968470.1| hypothetical protein RUMTOR_02047 [Ruminococcus torques ATCC 27756] gi|317502106|ref|ZP_07960287.1| ribosome recycling factor [Lachnospiraceae bacterium 8_1_57FAA] gi|331090380|ref|ZP_08339261.1| ribosome-recycling factor [Lachnospiraceae bacterium 3_1_46FAA] gi|145846827|gb|EDK23745.1| hypothetical protein RUMTOR_02047 [Ruminococcus torques ATCC 27756] gi|316896495|gb|EFV18585.1| ribosome recycling factor [Lachnospiraceae bacterium 8_1_57FAA] gi|330401127|gb|EGG80720.1| ribosome-recycling factor [Lachnospiraceae bacterium 3_1_46FAA] Length = 183 Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats. Identities = 81/186 (43%), Positives = 113/186 (60%), Gaps = 3/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 MN+ L +M TI+ L ++ T+R GR +P +LD + V+ YGS P+ QVANV+V Sbjct: 1 MNER--LTTYDSKMTKTINNLDGELATIRAGRANPHVLDKLTVDYYGSPTPIQQVANVSV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E RM+ + W+K M+ +E+ I S+LG+NP +G +R+ PE TE+RR L K Sbjct: 59 PEARMIQIQPWEKSMLKEIEKAILMSDLGINPTNDGSTVRLVFPELTEDRRKELAKDVKK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E +K++VRNIRRDG KK K + SED + LE+D+QKITD I+ ID E K Sbjct: 119 KGEAAKVAVRNIRRDGNVAFKKL-KGTEVSEDEIKDLEDDLQKITDKYIEKIDKMVEVKT 177 Query: 181 KEIMHF 186 KEIM Sbjct: 178 KEIMTV 183 >gi|225026987|ref|ZP_03716179.1| hypothetical protein EUBHAL_01243 [Eubacterium hallii DSM 3353] gi|224955672|gb|EEG36881.1| hypothetical protein EUBHAL_01243 [Eubacterium hallii DSM 3353] Length = 181 Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats. Identities = 70/180 (38%), Positives = 119/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +D+M +I L+++ ++R GR +P +LD +KV+ YG+ PL QV N++V EPR++ Sbjct: 2 IKKFEDKMQKSIESLEREYNSIRAGRANPHVLDKIKVDYYGTPTPLQQVGNISVPEPRII 61 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + W+ ++ ++E+ I +S++G+NP +G+V+R+ PE TEERR LVK E +K Sbjct: 62 TIQPWETSLLKAIEKEIMQSDIGINPTNDGKVIRLVFPELTEERRKELVKDVKKKGEAAK 121 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD D LKK+ K+ + +ED + ++ +QK TD IK ID ++K KEI+ Sbjct: 122 VAIRNIRRDANDSLKKANKNSEITEDELKDQQDKVQKATDKYIKTIDGMIDKKSKEILTV 181 >gi|314933438|ref|ZP_07840803.1| ribosome recycling factor [Staphylococcus caprae C87] gi|313653588|gb|EFS17345.1| ribosome recycling factor [Staphylococcus caprae C87] Length = 184 Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats. Identities = 79/186 (42%), Positives = 121/186 (65%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ +I ++ K RM +I L +++ + GR + ++L+ V V+ YG+ P+ Q+A++ V Sbjct: 1 MSDII--KDTKARMQKSIDNLSRELANISAGRANSNLLNGVTVDYYGAPTPVQQLASINV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R+LV+S +DK V +E+ I +NLG+NP +G+V+RI VP TEERR LVK Sbjct: 59 PEARLLVISPYDKTSVDDIEKAIIAANLGVNPTSDGEVIRISVPALTEERRKELVKNVKK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E +K+S+RNIRRD DHLKK K G +ED + S +D+QK TD++IK ID E+K+ Sbjct: 119 IGEDAKVSIRNIRRDINDHLKKQEKKGDITEDDLRSQTDDVQKATDNSIKEIDQLVEDKE 178 Query: 181 KEIMHF 186 ++IM Sbjct: 179 QDIMSV 184 >gi|312114736|ref|YP_004012332.1| ribosome recycling factor [Rhodomicrobium vannielii ATCC 17100] gi|311219865|gb|ADP71233.1| ribosome recycling factor [Rhodomicrobium vannielii ATCC 17100] Length = 188 Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats. Identities = 84/183 (45%), Positives = 121/183 (66%), Gaps = 1/183 (0%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEA-YGSHVPLNQVANVTVLEP 63 D++ I+ RM +++ LK + LRTGR S ++LD + V+ YG+ +P+ QVA V EP Sbjct: 6 FDIKEIEKRMKSSVASLKSEFGGLRTGRASATLLDPIMVQTSYGAKMPIQQVAAVNAPEP 65 Query: 64 RMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAE 123 R++ V VWDK + VE+ I ES+LGLNP+++G LR+P+PE +ERR LVK+A YAE Sbjct: 66 RLITVQVWDKSNLHGVEKAIRESSLGLNPVIDGLTLRLPIPELNQERRQELVKIAKKYAE 125 Query: 124 KSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 ++++VRN+R+DGMD +KK K GK SED +Q +TD TIK ID+ K+ EI Sbjct: 126 ATRVAVRNVRKDGMDQIKKLEKDGKISEDESGKTSTKVQDLTDKTIKEIDALLATKEHEI 185 Query: 184 MHF 186 M Sbjct: 186 MQV 188 >gi|300858728|ref|YP_003783711.1| ribosome-recycling factor [Corynebacterium pseudotuberculosis FRC41] gi|300686182|gb|ADK29104.1| ribosome-recycling factor [Corynebacterium pseudotuberculosis FRC41] gi|302206435|gb|ADL10777.1| Ribosome-recycling factor (RRF) [Corynebacterium pseudotuberculosis C231] gi|302330991|gb|ADL21185.1| ribosome recycling factor [Corynebacterium pseudotuberculosis 1002] gi|308276677|gb|ADO26576.1| ribosome recycling factor [Corynebacterium pseudotuberculosis I19] Length = 185 Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 113/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++ MG T+ + D++ +RTGR +P+M + V + YG P+ Q+A ++V E RML Sbjct: 6 LLESEEHMGTTVERTRDDLVNIRTGRANPAMFNGVIADYYGVPTPITQMATISVPEARML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ ++ M+ +E I S+LG+NP +GQVLR+ VP+ TEERR +VKVA + E K Sbjct: 66 LIKPYEMSMMGEIENAIRNSDLGVNPTNDGQVLRVTVPQLTEERRKEMVKVAKSKGEDGK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RN+RR GMD LKK +K G A ED V + E ++ KIT + +D +K+ E+M Sbjct: 126 IAIRNVRRKGMDQLKKIQKDGDAGEDEVQAAEKELDKITAKYVAQVDEVVSKKEAELMEV 185 >gi|228475010|ref|ZP_04059738.1| ribosome recycling factor [Staphylococcus hominis SK119] gi|314936580|ref|ZP_07843927.1| ribosome recycling factor [Staphylococcus hominis subsp. hominis C80] gi|228270995|gb|EEK12383.1| ribosome recycling factor [Staphylococcus hominis SK119] gi|313655199|gb|EFS18944.1| ribosome recycling factor [Staphylococcus hominis subsp. hominis C80] Length = 184 Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats. Identities = 82/186 (44%), Positives = 124/186 (66%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+++I Q+ K RM +I L +++ + GR + ++L+ V V+ YG+ P+ Q+A++ V Sbjct: 1 MSEII--QDTKSRMKKSIENLSRELANISAGRANSNLLNGVNVDYYGAPTPVQQLASINV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R+LV+S +DK VA +E+ I +NLG+NP +G+V+RI VP TEERR LVK Sbjct: 59 PEARLLVISPYDKTSVADIEKAIIAANLGVNPTSDGEVIRITVPALTEERRKELVKNVKK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E SK+S+RNIRRD D LKK K+G +ED + S D+QK+TD++IK ID+ +EK+ Sbjct: 119 IGEDSKVSIRNIRRDINDQLKKDEKNGDITEDDLRSQTEDVQKVTDNSIKEIDNLVDEKE 178 Query: 181 KEIMHF 186 K+IM Sbjct: 179 KDIMSV 184 >gi|296110369|ref|YP_003620750.1| ribosome recycling factor [Leuconostoc kimchii IMSNU 11154] gi|295831900|gb|ADG39781.1| ribosome recycling factor [Leuconostoc kimchii IMSNU 11154] Length = 181 Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats. Identities = 77/182 (42%), Positives = 122/182 (67%), Gaps = 3/182 (1%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 +L + K RM L++++ ++RTGR +P +LD ++VE YG+ PLNQVA+++V E R Sbjct: 3 FNLTDAKARMQGAQDALQRELGSIRTGRANPHILDRIEVEYYGAMTPLNQVASISVPEAR 62 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 +L+++ +DK ++ + R I+ S+LGLNP +G ++R+ +P+ TEE R LVK A AEK Sbjct: 63 ILMITPFDKTVLEEIIRAINISDLGLNPASDGNIVRLAIPQMTEEGRKDLVKQVKAEAEK 122 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +K+SVRN+RRD MD +K K + ED E+D+QK+TD IK ID+ +K+KE++ Sbjct: 123 AKVSVRNVRRDAMDSVK---KDKELPEDDARHAEDDVQKLTDENIKAIDTIASDKEKELL 179 Query: 185 HF 186 Sbjct: 180 TI 181 >gi|260890240|ref|ZP_05901503.1| ribosome recycling factor [Leptotrichia hofstadii F0254] gi|260859860|gb|EEX74360.1| ribosome recycling factor [Leptotrichia hofstadii F0254] Length = 185 Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats. Identities = 71/180 (39%), Positives = 113/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ +++M ++ K +R GR S SMLD V VEAYGS PLNQV V+ E R+L Sbjct: 6 LKEAEEKMQKSVENTKTKFSHVRAGRASVSMLDGVTVEAYGSATPLNQVGTVSAPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK ++ ++E+ I ++NLG NP +G+++R+ VPE TE+RR VK+ AE+ K Sbjct: 66 VIDPWDKSLIPAIEKTILQANLGFNPSNDGKIIRLVVPELTEDRRKEYVKMVKKEAEEGK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RN+R++ + L+K K + +ED + S E +QK TD I +D +K+KE++ Sbjct: 126 VAIRNVRKEVNNKLRKLEKDSEITEDELKSSEEKVQKSTDKFIAQVDDALSKKEKELLTV 185 >gi|172040501|ref|YP_001800215.1| ribosome recycling factor [Corynebacterium urealyticum DSM 7109] gi|238057837|sp|B1VG92|RRF_CORU7 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|171851805|emb|CAQ04781.1| unnamed protein product [Corynebacterium urealyticum DSM 7109] Length = 185 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 73/186 (39%), Positives = 123/186 (66%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+++ L ++RM ++ F ++D+ T+RTGR +P+M + V E YG P+ Q+A ++V Sbjct: 2 MDEI--LLECEERMTSSVEFAREDLTTIRTGRANPAMFNSVIAEYYGVPTPITQMATISV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E RM+++ +++ + +E I S+LG+NP +GQVLR+ +P+ TEERR +V+ A + Sbjct: 60 PEARMMLIKPYEQSQIQVIENAIRNSDLGVNPTNDGQVLRVTIPQLTEERRREMVRQAKS 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E +KI++RNIRR GM+ L K +K G A ED V + EN+++KIT + +K +D E K+ Sbjct: 120 KGEDAKIAIRNIRRHGMEQLAKIQKDGDAGEDEVRASENELEKITSNYVKQVDELVERKE 179 Query: 181 KEIMHF 186 +E+M Sbjct: 180 EELMEV 185 >gi|113953351|ref|YP_731208.1| ribosome recycling factor [Synechococcus sp. CC9311] gi|122945600|sp|Q0I8L4|RRF_SYNS3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|113880702|gb|ABI45660.1| ribosome recycling factor [Synechococcus sp. CC9311] Length = 182 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 61/179 (34%), Positives = 108/179 (60%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +++ M ++ +++ T+RTGR +PS+LD + VE YG+ PL +A+++ + + + Sbjct: 4 SDLEANMRKSVEATQRNFNTIRTGRANPSLLDRINVEYYGADTPLKSLASLSTPDSQTIA 63 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +D +A +E+ I S+LG P +G+++RI VP TEERR K+A Y+E+ K+ Sbjct: 64 VQPFDMGSLALIEKAIATSDLGFTPNNDGKIIRINVPPLTEERRKEFCKLAAKYSEEGKV 123 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++R++RRD +D +KK K G SED ++ +QK TD I ++ +K+ EI+ Sbjct: 124 ALRSVRRDAIDKIKKQEKEGDLSEDQSRDEQDQVQKTTDRFIAELEKHLADKEVEILKV 182 >gi|319762178|ref|YP_004126115.1| ribosome recycling factor [Alicycliphilus denitrificans BC] gi|330826010|ref|YP_004389313.1| ribosome recycling factor [Alicycliphilus denitrificans K601] gi|317116739|gb|ADU99227.1| ribosome recycling factor [Alicycliphilus denitrificans BC] gi|329311382|gb|AEB85797.1| ribosome recycling factor [Alicycliphilus denitrificans K601] Length = 186 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 79/179 (44%), Positives = 117/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N+ +M +I+ LK ++ +RTGR +P++LD + VE YGS VPL+QVANV++L+ R + Sbjct: 8 KNLDAKMDQSIAALKNNLSKVRTGRANPALLDSIHVEYYGSMVPLSQVANVSLLDARTIS 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K M A VE+ I ES+LGLNP G ++R+P+P +EERR + K+A E +K+ Sbjct: 68 VQPWEKNMGAKVEKAIRESDLGLNPASMGDLIRVPMPPMSEERRKEMTKLARNEGENAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD + +KK K ASED E DIQK TD I ID+ K+++I+ Sbjct: 128 AVRNLRRDANEAVKKLVKEKLASEDEQKRAEADIQKTTDKHIAEIDALVAAKEQDILAI 186 >gi|221632994|ref|YP_002522217.1| ribosome recycling factor [Thermomicrobium roseum DSM 5159] gi|254809539|sp|B9L003|RRF_THERP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|221155498|gb|ACM04625.1| ribosome recycling factor [Thermomicrobium roseum DSM 5159] Length = 185 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 118/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ + RM +I L++++ +R GR +PS+L+ ++V YG+ PLNQ+A ++ E R+L Sbjct: 6 LRDAEQRMKKSIELLRQELAGIRAGRAAPSLLEHLEVNYYGTPTPLNQLATISAPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV VWD+ V++VE+ I +S LGLNP V+GQ LRI +P TEERR LVK+ H E++K Sbjct: 66 VVQVWDRNAVSAVEKAIRQSELGLNPSVDGQTLRIQLPPLTEERRRQLVKLVHEEVEETK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD + +K+ K+ + SED E +Q +T+ I D ++K+ +I+ Sbjct: 126 VAIRNIRRDALADIKELLKNKEISEDDERRAEQRLQDLTNRYIAEADKLGKQKEHDILEI 185 >gi|71903032|ref|YP_279835.1| ribosome recycling factor [Streptococcus pyogenes MGAS6180] gi|123640384|sp|Q48UX6|RRF_STRPM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|71802127|gb|AAX71480.1| ribosome recycling factor [Streptococcus pyogenes MGAS6180] Length = 185 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 116/180 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+R + L ++ ++R GR + S+LD ++V+ YG+ PLNQ+A++TV E R+L Sbjct: 6 IETAKERFAQSHQSLSREYASIRAGRANASLLDRIQVDYYGAPTPLNQLASITVPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +DK + +ER ++ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LISPFDKSSIKDIERALNASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIRRD MD KK K+ + +ED + +LE DIQK+TD IK ID EK+KE++ Sbjct: 126 IAIRNIRRDAMDDAKKQEKAKEITEDELKTLEKDIQKVTDDAIKEIDRMTAEKEKELLSV 185 >gi|313813385|gb|EFS51099.1| ribosome recycling factor [Propionibacterium acnes HL025PA1] gi|327334225|gb|EGE75939.1| ribosome recycling factor [Propionibacterium acnes HL097PA1] Length = 184 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 64/186 (34%), Positives = 113/186 (60%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ +I ++ + +MG + +++ +RTGR +P+M + + VE Y + PL Q+A+ V Sbjct: 1 MSDII--KDAEKKMGSAVDHAREEFAAIRTGRANPAMFNKLMVEYYDTPTPLQQLASFQV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R ++++ +DK V VE+ I +S+LG+NP +G V+R +P TEERR +K+A Sbjct: 59 PEARTVLIAPFDKSCVNDVEKAIRDSDLGVNPSNDGNVVRCVLPALTEERRKEYIKMAKT 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE+ +I+VRN+RR D +KK K + SED + LE ++ ++T ++ ID + K+ Sbjct: 119 KAEEGRIAVRNVRRASNDVVKKQEKDKEISEDEMTRLEKELDQVTRKYVEQIDELLKSKE 178 Query: 181 KEIMHF 186 E++ Sbjct: 179 SELLEI 184 >gi|330950678|gb|EGH50938.1| ribosome recycling factor [Pseudomonas syringae Cit 7] Length = 213 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 69/186 (37%), Positives = 108/186 (58%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ ++ + RM ++ L +RTG+ PS+L V V YG+ PL+QVANVTV Sbjct: 2 INEI--KKDAQTRMQKSLESLTHAFTRIRTGKAHPSILGGVMVPYYGADTPLSQVANVTV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R L V +++ M+A+V++ I S LG NP G++L I +P TEE R K A Sbjct: 60 KDSRTLQVVAFERNMLAAVDKAIQSSGLGFNPTNLGELLLISMPALTEETRKGFTKQARD 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE ++++VRNIRRD + LK K + SED +DIQK+TD + I+ ++K+ Sbjct: 120 AAEDARVAVRNIRRDALSQLKDLVKEKEISEDEERRAADDIQKLTDKFVAEIEVAVKQKE 179 Query: 181 KEIMHF 186 ++M Sbjct: 180 ADLMAV 185 >gi|163750354|ref|ZP_02157594.1| ribosome recycling factor [Shewanella benthica KT99] gi|161329844|gb|EDQ00830.1| ribosome recycling factor [Shewanella benthica KT99] Length = 185 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 85/179 (47%), Positives = 111/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + + RM I K M +RTGR PS+LD +KV YGS PL QV NVT+ + R L Sbjct: 7 ADAQTRMAKCIEATKTQMAKVRTGRAHPSLLDSIKVSYYGSMTPLKQVGNVTIEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 VSV+D M+ +VE+ I S+LGLNP+ G V+RIP+P TEERR L+KV A AE S+I Sbjct: 67 VSVFDVSMIKAVEKAIMTSDLGLNPMSAGAVIRIPLPSLTEERRKDLIKVVRAEAENSRI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRN+RRD +K K + +ED V E++IQK TD+ IK ID K+ E+M Sbjct: 127 SVRNVRRDANSDVKVLEKEKECTEDDVHRTEDEIQKFTDAHIKQIDDLLSAKEAELMKV 185 >gi|291563192|emb|CBL42008.1| ribosome recycling factor [butyrate-producing bacterium SS3/4] Length = 184 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 70/181 (38%), Positives = 112/181 (61%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 +L+ +++M +I L + ++R GR +P +LD +KV+ YG+ P+ QV N++V E RM Sbjct: 4 ELKVYEEKMEKSIDALLNEYASIRAGRANPHVLDKIKVDYYGTPTPIQQVGNISVPEARM 63 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 +++ W+K ++ +E+ I S LG+NP +G V+R+ PE TEERR L K + + Sbjct: 64 ILIQPWEKSLIRPIEKAIQTSELGINPSNDGSVIRLVFPELTEERRKELAKDVKKKGDGA 123 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 K+++RNIRRD + KK KS + SED + L +QK+TD +I+ ID E K KEI+ Sbjct: 124 KVAIRNIRRDANEAFKKMEKSDEISEDDLKELTEKVQKLTDKSIEKIDKAVENKTKEILT 183 Query: 186 F 186 Sbjct: 184 V 184 >gi|284044967|ref|YP_003395307.1| ribosome recycling factor [Conexibacter woesei DSM 14684] gi|283949188|gb|ADB51932.1| ribosome recycling factor [Conexibacter woesei DSM 14684] Length = 185 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 68/180 (37%), Positives = 116/180 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 LQ+ ++RM ++ + + ++RTGR +P++LD + VE YG++ PL Q+A + E RML Sbjct: 6 LQDARERMSKSVESTRHEFGSVRTGRATPALLDRIMVEYYGANTPLKQLATINAPEARML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V +DK + ++E+ I ES++GL P +G ++R+ +PE TEERR LVKV AE+ + Sbjct: 66 SVQPFDKSSIKAIEKAIMESDVGLTPNNDGNLIRLSIPELTEERRRQLVKVVRNIAEEGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I +RN+RRD M L++ R +G+ D E ++QK+TD + +++F + K++EI+ Sbjct: 126 IGIRNVRRDTMHDLRELRDAGEVGADDEHRAEAELQKLTDEKVGELETFLKNKEEEILEV 185 >gi|227524388|ref|ZP_03954437.1| ribosome recycling factor [Lactobacillus hilgardii ATCC 8290] gi|227088619|gb|EEI23931.1| ribosome recycling factor [Lactobacillus hilgardii ATCC 8290] Length = 187 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 67/179 (37%), Positives = 121/179 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K +M L+ ++ ++R GR + S+L V V+ YG+ PLNQ+A++++ E R++ Sbjct: 8 LNEAKTKMKKAQEVLEHELGSIRAGRANASLLSGVTVDYYGAPTPLNQIASISIPEARVI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK + ++E+GI+E++LGL+P +G +R+ +P TEERR + K A EKSK Sbjct: 68 LITPYDKSSLDNIEKGIYEADLGLSPANDGTAIRLAIPALTEERRREVAKQVKATGEKSK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRN+RR+ MD K+ KS + ++D + LE+ +QK+TD++IK++D +K+ E+M+ Sbjct: 128 VAVRNVRREAMDTFKRGNKSEEITDDELHRLEDQVQKLTDNSIKSVDKIVADKENEVMN 186 >gi|317121843|ref|YP_004101846.1| ribosome recycling factor [Thermaerobacter marianensis DSM 12885] gi|315591823|gb|ADU51119.1| ribosome recycling factor [Thermaerobacter marianensis DSM 12885] Length = 184 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 70/180 (38%), Positives = 113/180 (62%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ ++RM + ++++ +R GR +P++L+ ++V+ YG+ P++Q+A +T EPRML Sbjct: 6 LRQARERMEARVENFRRELAAVRAGRATPALLEKIRVDYYGTPTPIHQLATITAPEPRML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV WDK ++ +E+ I +S+LG+NP +GQV+RI +P TEE R LVK AE+ + Sbjct: 66 VVQPWDKSVMGEIEKAIAKSDLGVNPSSDGQVIRIVLPPLTEETRNELVKRVRKMAEEER 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RR D LK+ G SED + + +Q++TD TI ID K+KEI Sbjct: 126 VAVRNVRRQANDDLKELEDQG-FSEDEIRRAQEKVQELTDRTIARIDELLAAKEKEIREV 184 >gi|24380004|ref|NP_721959.1| ribosome recycling factor [Streptococcus mutans UA159] gi|290580017|ref|YP_003484409.1| putative ribosome recycling factor [Streptococcus mutans NN2025] gi|34924954|sp|Q8DSY2|RRF_STRMU RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|24377992|gb|AAN59265.1|AE014993_9 putative ribosome recycling factor [Streptococcus mutans UA159] gi|254996916|dbj|BAH87517.1| putative ribosome recycling factor [Streptococcus mutans NN2025] Length = 185 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 74/180 (41%), Positives = 115/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+R + L ++ ++R GR + S+LD ++VE YG PLNQ+A++TV E R+L Sbjct: 6 VEKAKERFEQSHQSLAREFGSIRAGRANASLLDRIEVEYYGVPTPLNQLASITVPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +VS +DK + +E I+ S++G+NP +G V+R+ +P TEE R L K E +K Sbjct: 66 LVSPFDKSSLKDIEHAINASDIGINPANDGSVIRLVIPALTEETRKELAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD MD KK K + +ED + SLE DIQK+TD +K+IDS K+KE++ Sbjct: 126 VAIRNIRRDAMDEAKKQEKIKEITEDELKSLEKDIQKVTDEAVKHIDSMTANKEKELLEV 185 >gi|223044216|ref|ZP_03614253.1| ribosome recycling factor [Staphylococcus capitis SK14] gi|222442366|gb|EEE48474.1| ribosome recycling factor [Staphylococcus capitis SK14] Length = 184 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 78/186 (41%), Positives = 122/186 (65%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ +I ++ K RM +I L +++ + GR + ++L+ V V+ YG+ P+ Q+A++ V Sbjct: 1 MSDII--KDTKARMQKSIDNLSRELANISAGRANSNLLNGVTVDYYGAPTPVQQLASINV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R+LV+S +DK V +E+ I +NLG+NP +G+V+RI VP TEERR LVK Sbjct: 59 PEARLLVISPYDKTSVDDIEKAIIAANLGVNPTSDGEVIRISVPALTEERRKELVKNVKK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E +K+S+RNIRRD DHLKK K+G +ED + S +D+QK TD++IK ID ++K+ Sbjct: 119 IGEDAKVSIRNIRRDINDHLKKEEKNGDITEDDLRSQTDDVQKATDNSIKEIDQLVDDKE 178 Query: 181 KEIMHF 186 ++IM Sbjct: 179 QDIMSV 184 >gi|300173184|ref|YP_003772350.1| ribosome Recycling Factor, RRF [Leuconostoc gasicomitatum LMG 18811] gi|299887563|emb|CBL91531.1| Ribosome Recycling Factor, RRF [Leuconostoc gasicomitatum LMG 18811] Length = 181 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 77/182 (42%), Positives = 120/182 (65%), Gaps = 3/182 (1%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 +L + K RM LK+++ ++RTGR +P +LD ++VE YG+ PL QVA+++V E R Sbjct: 3 FNLTDAKTRMQGAQDALKRELGSIRTGRANPHILDRIEVEYYGAMTPLKQVASISVPEAR 62 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 +L+++ +DK + + R I+ S+LGLNP +G ++R+ +P+ TEE R L K A AEK Sbjct: 63 ILLITPFDKSALEEIVRAINMSDLGLNPASDGNIVRLAIPQMTEEGRKDLAKQVKAEAEK 122 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +K+S+RN+RRD MD +K K + ED V + E+D+QK+TD IK ID EK+KE++ Sbjct: 123 AKVSIRNVRRDAMDTVK---KDKELPEDDVRNAEDDVQKLTDDNIKAIDVIAAEKEKELL 179 Query: 185 HF 186 Sbjct: 180 TI 181 >gi|304320071|ref|YP_003853714.1| putative ribosome recycling factor [Parvularcula bermudensis HTCC2503] gi|303298974|gb|ADM08573.1| putative ribosome recycling factor [Parvularcula bermudensis HTCC2503] Length = 183 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 85/186 (45%), Positives = 121/186 (65%), Gaps = 3/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M D++ ++ RM I+ LK + LR+GR + S+LD V V AYGS +PLNQV V V Sbjct: 1 MADGPDMKELEKRMDGAIASLKSEYAGLRSGRATISLLDPVTVNAYGSEMPLNQVGTVGV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R L V VWDK +V++VE+GI ES L LNP+ +GQ +R+P+P TEERR L K+ Sbjct: 61 PDARTLSVQVWDKGLVSAVEKGIRESGLDLNPVTDGQTVRVPMPPMTEERRRDLAKLTGK 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE +K+++RN+RRDGM+ KK+ SED + ++QK+TD+ +K ID +K+ Sbjct: 121 YAEAAKVAIRNVRRDGMEEAKKAE---GVSEDDQKRMSEEVQKLTDAKVKEIDQMHAQKE 177 Query: 181 KEIMHF 186 KEIM Sbjct: 178 KEIMQV 183 >gi|148984686|ref|ZP_01817954.1| ribosome recycling factor [Streptococcus pneumoniae SP3-BS71] gi|148988384|ref|ZP_01819831.1| ribosome recycling factor [Streptococcus pneumoniae SP6-BS73] gi|148998620|ref|ZP_01826060.1| ribosome recycling factor [Streptococcus pneumoniae SP11-BS70] gi|149002494|ref|ZP_01827428.1| ribosome recycling factor [Streptococcus pneumoniae SP14-BS69] gi|149006380|ref|ZP_01830092.1| ribosome recycling factor [Streptococcus pneumoniae SP18-BS74] gi|168485896|ref|ZP_02710404.1| ribosome recycling factor [Streptococcus pneumoniae CDC1087-00] gi|168575607|ref|ZP_02721543.1| ribosome recycling factor [Streptococcus pneumoniae MLV-016] gi|169832481|ref|YP_001694393.1| ribosome recycling factor [Streptococcus pneumoniae Hungary19A-6] gi|194397625|ref|YP_002037583.1| ribosome recycling factor [Streptococcus pneumoniae G54] gi|221231712|ref|YP_002510864.1| ribosome recycling factor [Streptococcus pneumoniae ATCC 700669] gi|225854450|ref|YP_002735962.1| ribosome recycling factor [Streptococcus pneumoniae JJA] gi|225861166|ref|YP_002742675.1| ribosome recycling factor [Streptococcus pneumoniae Taiwan19F-14] gi|237650519|ref|ZP_04524771.1| ribosome recycling factor [Streptococcus pneumoniae CCRI 1974] gi|237820813|ref|ZP_04596658.1| ribosome recycling factor [Streptococcus pneumoniae CCRI 1974M2] gi|298230564|ref|ZP_06964245.1| ribosome recycling factor [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254562|ref|ZP_06978148.1| ribosome recycling factor [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503047|ref|YP_003724987.1| ribosome recycling factor [Streptococcus pneumoniae TCH8431/19A] gi|307067602|ref|YP_003876568.1| ribosome recycling factor [Streptococcus pneumoniae AP200] gi|307127503|ref|YP_003879534.1| ribosome recycling factor [Streptococcus pneumoniae 670-6B] gi|226749942|sp|B5E448|RRF_STRP4 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238688288|sp|B1IBA8|RRF_STRPI RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|254809533|sp|B8ZP45|RRF_STRPJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|254809535|sp|C1CDU1|RRF_STRZJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|254809537|sp|C1CRV3|RRF_STRZT RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|147755618|gb|EDK62665.1| ribosome recycling factor [Streptococcus pneumoniae SP11-BS70] gi|147759431|gb|EDK66423.1| ribosome recycling factor [Streptococcus pneumoniae SP14-BS69] gi|147762157|gb|EDK69119.1| ribosome recycling factor [Streptococcus pneumoniae SP18-BS74] gi|147923077|gb|EDK74192.1| ribosome recycling factor [Streptococcus pneumoniae SP3-BS71] gi|147926065|gb|EDK77139.1| ribosome recycling factor [Streptococcus pneumoniae SP6-BS73] gi|168994983|gb|ACA35595.1| ribosome recycling factor [Streptococcus pneumoniae Hungary19A-6] gi|183571057|gb|EDT91585.1| ribosome recycling factor [Streptococcus pneumoniae CDC1087-00] gi|183578469|gb|EDT98997.1| ribosome recycling factor [Streptococcus pneumoniae MLV-016] gi|194357292|gb|ACF55740.1| ribosome recycling factor [Streptococcus pneumoniae G54] gi|220674172|emb|CAR68698.1| ribosome recycling factor [Streptococcus pneumoniae ATCC 700669] gi|225723622|gb|ACO19475.1| ribosome recycling factor [Streptococcus pneumoniae JJA] gi|225727526|gb|ACO23377.1| ribosome recycling factor [Streptococcus pneumoniae Taiwan19F-14] gi|298238642|gb|ADI69773.1| ribosome recycling factor [Streptococcus pneumoniae TCH8431/19A] gi|301799925|emb|CBW32506.1| ribosome recycling factor [Streptococcus pneumoniae OXC141] gi|306409139|gb|ADM84566.1| Ribosome recycling factor [Streptococcus pneumoniae AP200] gi|306484565|gb|ADM91434.1| ribosome recycling factor [Streptococcus pneumoniae 670-6B] gi|327389222|gb|EGE87567.1| ribosome recycling factor [Streptococcus pneumoniae GA04375] gi|332075559|gb|EGI86027.1| ribosome recycling factor [Streptococcus pneumoniae GA17545] gi|332076224|gb|EGI86690.1| ribosome recycling factor [Streptococcus pneumoniae GA41301] gi|332202800|gb|EGJ16869.1| ribosome recycling factor [Streptococcus pneumoniae GA41317] Length = 185 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 76/186 (40%), Positives = 117/186 (62%), Gaps = 1/186 (0%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M VI ++ K+RM + L ++ +R GR + S+LD V VE YG PLNQ+A++T+ Sbjct: 1 MANVI-IEKAKERMTQSHQSLAREFGGIRAGRANASLLDRVHVEYYGVETPLNQIASITI 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R+L+V+ +DK + +ER ++ S+LG+ P +G V+R+ +P TEE R L K Sbjct: 60 PEARVLLVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKK 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E +K++VRNIRRD MD KK K+ + +ED + +LE DIQK+TD +K+ID K+ Sbjct: 120 VGENAKVAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKE 179 Query: 181 KEIMHF 186 KE++ Sbjct: 180 KELLEV 185 >gi|253580861|ref|ZP_04858124.1| ribosome recycling factor [Ruminococcus sp. 5_1_39B_FAA] gi|251847931|gb|EES75898.1| ribosome recycling factor [Ruminococcus sp. 5_1_39BFAA] Length = 183 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 78/180 (43%), Positives = 114/180 (63%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q +++M T++ L+ +++T+R GR +P +LD + V+ YG+ PL QVAN+TV E RM+ Sbjct: 5 IQKYEEKMKKTLASLESELVTIRAGRANPHILDKLAVDYYGAPTPLQQVANITVPEARMI 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + W+ ++ +E+ I S+LGLNP +G+V+R+ PE TEERR LVK E +K Sbjct: 65 QIQPWESSLIKGIEKAILTSDLGLNPSNDGKVIRLVFPELTEERRKELVKDVKKKGEAAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD D KK K SED + LE IQK TD IK +D+ + K KEIM Sbjct: 125 VAVRNIRRDANDAFKKLAKQ-DVSEDEIKELEEKIQKSTDKYIKEVDAAVDAKSKEIMTV 183 >gi|168491033|ref|ZP_02715176.1| ribosome recycling factor [Streptococcus pneumoniae CDC0288-04] gi|183574722|gb|EDT95250.1| ribosome recycling factor [Streptococcus pneumoniae CDC0288-04] Length = 185 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 75/186 (40%), Positives = 117/186 (62%), Gaps = 1/186 (0%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M +I ++ K+RM + L ++ +R GR + S+LD V VE YG PLNQ+A++T+ Sbjct: 1 MANII-IEKAKERMTQSHQSLAREFGGIRAGRANASLLDRVHVEYYGVETPLNQIASITI 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R+L+V+ +DK + +ER ++ S+LG+ P +G V+R+ +P TEE R L K Sbjct: 60 PEARVLLVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKK 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E +K++VRNIRRD MD KK K+ + +ED + +LE DIQK+TD +K+ID K+ Sbjct: 120 VGENAKVAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKE 179 Query: 181 KEIMHF 186 KE++ Sbjct: 180 KELLEV 185 >gi|159044043|ref|YP_001532837.1| ribosome recycling factor [Dinoroseobacter shibae DFL 12] gi|190360241|sp|A8LK37|RRF_DINSH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|157911803|gb|ABV93236.1| ribosome recycling factor [Dinoroseobacter shibae DFL 12] Length = 188 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 83/176 (47%), Positives = 116/176 (65%), Gaps = 1/176 (0%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K RM ++ L+ + +LRTGR S SML+ V V+AYG P+NQV V V EPRM+ ++V Sbjct: 14 KRRMDGALASLRTEFASLRTGRASASMLEPVMVDAYGQKTPINQVGTVNVPEPRMVTINV 73 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 WDK +V VE+ I ES LG+NP + G ++ +P+PE EERR L KVA YAE +++++R Sbjct: 74 WDKSLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRRELTKVAAQYAEHARVAIR 133 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 N+RRDGMD LKK + G SED +++Q +TD+ IK +D E K+ EIM Sbjct: 134 NVRRDGMDQLKKFKADG-MSEDDHKIWSDEVQALTDAEIKKVDDALENKQSEIMQV 188 >gi|297821238|ref|XP_002878502.1| hypothetical protein ARALYDRAFT_907901 [Arabidopsis lyrata subsp. lyrata] gi|297324340|gb|EFH54761.1| hypothetical protein ARALYDRAFT_907901 [Arabidopsis lyrata subsp. lyrata] Length = 275 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 66/178 (37%), Positives = 109/178 (61%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 ++K +M TI L+ ++RTGR + +MLD ++VE YGS V L +A ++ + L++ Sbjct: 98 DVKSKMEKTIETLRTSFNSIRTGRSNAAMLDKIEVEYYGSPVSLKSIAQISTPDGSSLLL 157 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 +DK + ++E+ I S+LG+ P +G V+R+ +P T ERR L KV +E+ K++ Sbjct: 158 QPYDKSSLKAIEKAIVNSDLGVTPNNDGDVIRLSLPPLTSERRKELSKVVAKQSEEGKVA 217 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +RNIRRD + K K K SED V L +D+QK+ D +K I+ +++K+KE+M Sbjct: 218 LRNIRRDALKSYDKLEKEKKLSEDNVKDLSSDLQKLIDVYMKKIEELYKQKEKELMKV 275 >gi|237734608|ref|ZP_04565089.1| flagellar biosynthetic protein flhB [Mollicutes bacterium D7] gi|229382428|gb|EEO32519.1| flagellar biosynthetic protein flhB [Coprobacillus sp. D7] Length = 181 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 76/180 (42%), Positives = 116/180 (64%), Gaps = 4/180 (2%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +RM TI ++D+ ++RTGR +P+MLD V V YGS P+NQ+A ++V+E R L Sbjct: 6 LDDTNERMTKTIESFQRDLSSVRTGRANPNMLDRVMVNYYGSPTPVNQIAGISVVEGRQL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +DK + +E GI+E++LGL P +G+++RI VP TEERR K +AE +K Sbjct: 66 VIKPYDKSSIKDIEHGIYEADLGLTPQNDGEIIRIMVPALTEERRKEFAKNVWKFAENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+RNIRRD D +KK+ SED + + + +QK+TD +K ID + K+K+IM Sbjct: 126 VSIRNIRRDSNDEIKKT----DGSEDEIKAGQERVQKLTDKFVKEIDEIAKVKEKDIMTV 181 >gi|170017339|ref|YP_001728258.1| ribosome recycling factor [Leuconostoc citreum KM20] gi|190360251|sp|B1MZ62|RRF_LEUCK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|169804196|gb|ACA82814.1| Ribosome recycling factor [Leuconostoc citreum KM20] Length = 181 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 81/182 (44%), Positives = 121/182 (66%), Gaps = 3/182 (1%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 DL + K RM L++++ ++RTGR +P +LD ++VE YG+ PLNQVA+++V E R Sbjct: 3 FDLTDAKSRMQGAQDALQRELTSIRTGRANPHILDRIEVEYYGAMTPLNQVASISVPEAR 62 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 +L+++ +DK + + R I+ S+LGLNP +G ++R+ +P+ TEE R L K A AEK Sbjct: 63 VLLITPFDKTALEEIIRAINMSDLGLNPSSDGNIVRLMIPQMTEEGRKDLAKQVKAEAEK 122 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +K+SVRN+RRD MD +K K + ED V ENDIQK+TD+ IK ID EK+KE++ Sbjct: 123 AKVSVRNVRRDAMDSVK---KEKEMPEDDVRKAENDIQKLTDNNIKAIDDIASEKEKELL 179 Query: 185 HF 186 Sbjct: 180 TI 181 >gi|313633414|gb|EFS00248.1| ribosome recycling factor [Listeria seeligeri FSL N1-067] Length = 176 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 73/176 (41%), Positives = 120/176 (68%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K++M L + + T+R GR + S+LD + V+ YG+ P+NQ+A++++ E RML+++ Sbjct: 1 KEKMEKAEQALTRQLGTIRAGRANASLLDRLTVDYYGAATPVNQMASISIPEARMLLITP 60 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +DK ++ +E+ I +S+LGL P +G VLR+ +P+ TEERR LVK AE++K++VR Sbjct: 61 YDKTILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAKVAVR 120 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 NIRR+ + LKK K+G +ED + S D+QK+TD +IKNID+ ++K+ EI+ Sbjct: 121 NIRREANEDLKKLEKNGDITEDDLRSYGEDVQKLTDESIKNIDNITKDKEAEILEV 176 >gi|227551763|ref|ZP_03981812.1| ribosome recycling factor [Enterococcus faecium TX1330] gi|257878533|ref|ZP_05658186.1| ribosome recycling factor [Enterococcus faecium 1,230,933] gi|257883168|ref|ZP_05662821.1| ribosome recycling factor [Enterococcus faecium 1,231,502] gi|257884335|ref|ZP_05663988.1| ribosome recycling factor [Enterococcus faecium 1,231,501] gi|257887076|ref|ZP_05666729.1| ribosome recycling factor [Enterococcus faecium 1,141,733] gi|257889270|ref|ZP_05668923.1| ribosome recycling factor [Enterococcus faecium 1,231,410] gi|257895641|ref|ZP_05675294.1| ribosome recycling factor [Enterococcus faecium Com12] gi|257898231|ref|ZP_05677884.1| ribosome recycling factor [Enterococcus faecium Com15] gi|258615941|ref|ZP_05713711.1| ribosome recycling factor [Enterococcus faecium DO] gi|260560118|ref|ZP_05832296.1| ribosome recycling factor [Enterococcus faecium C68] gi|261208147|ref|ZP_05922821.1| ribosome recycling factor [Enterococcus faecium TC 6] gi|289566196|ref|ZP_06446629.1| ribosome recycling factor [Enterococcus faecium D344SRF] gi|293377748|ref|ZP_06623937.1| ribosome recycling factor [Enterococcus faecium PC4.1] gi|293556642|ref|ZP_06675207.1| ribosome recycling factor [Enterococcus faecium E1039] gi|293560147|ref|ZP_06676650.1| ribosome recycling factor [Enterococcus faecium E1162] gi|293567410|ref|ZP_06678757.1| ribosome recycling factor [Enterococcus faecium E1071] gi|293570620|ref|ZP_06681671.1| ribosome recycling factor [Enterococcus faecium E980] gi|294613944|ref|ZP_06693879.1| ribosome recycling factor [Enterococcus faecium E1636] gi|294620329|ref|ZP_06699645.1| ribosome recycling factor [Enterococcus faecium E1679] gi|294620756|ref|ZP_06699963.1| ribosome recycling factor [Enterococcus faecium U0317] gi|314937498|ref|ZP_07844831.1| ribosome recycling factor [Enterococcus faecium TX0133a04] gi|314942157|ref|ZP_07849011.1| ribosome recycling factor [Enterococcus faecium TX0133C] gi|314947503|ref|ZP_07850918.1| ribosome recycling factor [Enterococcus faecium TX0082] gi|314951490|ref|ZP_07854539.1| ribosome recycling factor [Enterococcus faecium TX0133A] gi|314992580|ref|ZP_07857998.1| ribosome recycling factor [Enterococcus faecium TX0133B] gi|314995485|ref|ZP_07860585.1| ribosome recycling factor [Enterococcus faecium TX0133a01] gi|227179068|gb|EEI60040.1| ribosome recycling factor [Enterococcus faecium TX1330] gi|257812761|gb|EEV41519.1| ribosome recycling factor [Enterococcus faecium 1,230,933] gi|257818826|gb|EEV46154.1| ribosome recycling factor [Enterococcus faecium 1,231,502] gi|257820173|gb|EEV47321.1| ribosome recycling factor [Enterococcus faecium 1,231,501] gi|257823130|gb|EEV50062.1| ribosome recycling factor [Enterococcus faecium 1,141,733] gi|257825630|gb|EEV52256.1| ribosome recycling factor [Enterococcus faecium 1,231,410] gi|257832206|gb|EEV58627.1| ribosome recycling factor [Enterococcus faecium Com12] gi|257836143|gb|EEV61217.1| ribosome recycling factor [Enterococcus faecium Com15] gi|260073953|gb|EEW62277.1| ribosome recycling factor [Enterococcus faecium C68] gi|260077581|gb|EEW65298.1| ribosome recycling factor [Enterococcus faecium TC 6] gi|289161974|gb|EFD09841.1| ribosome recycling factor [Enterococcus faecium D344SRF] gi|291589807|gb|EFF21608.1| ribosome recycling factor [Enterococcus faecium E1071] gi|291593219|gb|EFF24793.1| ribosome recycling factor [Enterococcus faecium E1636] gi|291593441|gb|EFF24999.1| ribosome recycling factor [Enterococcus faecium E1679] gi|291599736|gb|EFF30746.1| ribosome recycling factor [Enterococcus faecium U0317] gi|291601177|gb|EFF31464.1| ribosome recycling factor [Enterococcus faecium E1039] gi|291605880|gb|EFF35311.1| ribosome recycling factor [Enterococcus faecium E1162] gi|291609291|gb|EFF38562.1| ribosome recycling factor [Enterococcus faecium E980] gi|292643748|gb|EFF61869.1| ribosome recycling factor [Enterococcus faecium PC4.1] gi|313590319|gb|EFR69164.1| ribosome recycling factor [Enterococcus faecium TX0133a01] gi|313592872|gb|EFR71717.1| ribosome recycling factor [Enterococcus faecium TX0133B] gi|313596330|gb|EFR75175.1| ribosome recycling factor [Enterococcus faecium TX0133A] gi|313599080|gb|EFR77925.1| ribosome recycling factor [Enterococcus faecium TX0133C] gi|313643139|gb|EFS07719.1| ribosome recycling factor [Enterococcus faecium TX0133a04] gi|313646053|gb|EFS10633.1| ribosome recycling factor [Enterococcus faecium TX0082] Length = 185 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 70/186 (37%), Positives = 120/186 (64%), Gaps = 1/186 (0%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M I + K++M L++++ +R GR + S+LD + V YG+ PLNQ+A++ + Sbjct: 1 MADAI-MTEAKEKMKKAAQNLQRELGQIRAGRANASLLDRITVNYYGAPTPLNQMASIQI 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R+L+++ +DK ++ VE+ I S++G++P +G V+R+ +P+ TEERR L K Sbjct: 60 PEARVLMITPFDKSILQDVEKAIMASDIGISPTNDGNVIRLVIPQLTEERRKELAKDVKK 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE +KI++RNIRRD +D KK +K+G +ED + LE D+Q +TD++IK +D +K+ Sbjct: 120 EAENAKIAIRNIRRDAIDEYKKQQKNGDITEDDLRGLEKDVQTLTDNSIKEVDKIAADKE 179 Query: 181 KEIMHF 186 KE++ Sbjct: 180 KELLEV 185 >gi|18412657|ref|NP_567141.1| RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR) [Arabidopsis thaliana] gi|22001953|sp|Q9M1X0|RRFC_ARATH RecName: Full=Ribosome-recycling factor, chloroplastic; Short=RRF; AltName: Full=CpFrr; AltName: Full=RRFHCP; AltName: Full=Ribosome-releasing factor, chloroplastic; Flags: Precursor gi|13926252|gb|AAK49599.1|AF372883_1 AT3g63190/F16M2_40 [Arabidopsis thaliana] gi|15982709|gb|AAL09724.1| AT3g63190/F16M2_40 [Arabidopsis thaliana] gi|20260166|gb|AAM12981.1| putative protein [Arabidopsis thaliana] gi|27363350|gb|AAO11594.1| At3g63190/F16M2_40 [Arabidopsis thaliana] gi|332646925|gb|AEE80446.1| ribosome-recycling factor [Arabidopsis thaliana] Length = 275 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 65/178 (36%), Positives = 109/178 (61%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 ++K +M TI L+ ++RTGR + +MLD ++VE YGS V L +A ++ + L++ Sbjct: 98 DVKSKMEKTIETLRTSFNSIRTGRSNAAMLDKIEVEYYGSPVSLKSIAQISTPDGSSLLL 157 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 +DK + ++E+ I S+LG+ P +G V+R+ +P T +RR L KV +E+ K++ Sbjct: 158 QPYDKSSLKAIEKAIVNSDLGVTPNNDGDVIRLSLPPLTSDRRKELSKVVAKQSEEGKVA 217 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +RNIRRD + K K K SED V L +D+QK+ D +K I+ +++K+KE+M Sbjct: 218 LRNIRRDALKSYDKLEKEKKLSEDNVKDLSSDLQKLIDVYMKKIEELYKQKEKELMKV 275 >gi|304388991|ref|ZP_07371038.1| ribosome recycling factor [Neisseria meningitidis ATCC 13091] gi|304337125|gb|EFM03312.1| ribosome recycling factor [Neisseria meningitidis ATCC 13091] Length = 203 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 77/186 (41%), Positives = 117/186 (62%), Gaps = 1/186 (0%) Query: 2 NQVIDLQN-IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 N + D+Q + +M ++ LK+++ +RTGR +LD V+VE +GS VP++QVANVT+ Sbjct: 18 NMINDIQKTAEGKMQRSVEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVANVTL 77 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 L+ R + V ++ M A VE+ I +SNLGLNP G ++R+P+P TEERR L+KV Sbjct: 78 LDARTIGVKPFEGNMAAKVEKAIRDSNLGLNPAAVGDLIRVPMPMLTEERRKDLIKVVRG 137 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE+ ++S+RN+RRD DH+KK K + SED E +QK+TD I D K+ Sbjct: 138 EAEEGRVSIRNVRRDANDHIKKLLKDKEISEDEARRGEEAVQKLTDKYITEADKLLTAKE 197 Query: 181 KEIMHF 186 +++M Sbjct: 198 EDLMAI 203 >gi|289550950|ref|YP_003471854.1| Ribosome recycling factor [Staphylococcus lugdunensis HKU09-01] gi|315658452|ref|ZP_07911324.1| ribosome recycling factor [Staphylococcus lugdunensis M23590] gi|289180482|gb|ADC87727.1| Ribosome recycling factor [Staphylococcus lugdunensis HKU09-01] gi|315496781|gb|EFU85104.1| ribosome recycling factor [Staphylococcus lugdunensis M23590] Length = 184 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 79/186 (42%), Positives = 118/186 (63%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M +I ++ K RM +I L +++ + GR + ++L+ V V+ YG+ P+ Q+A++ V Sbjct: 1 MADII--KDTKARMNKSIENLSRELANINAGRANSNLLNGVTVDYYGAPTPVQQLASINV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R+LV+S +DK V +ER I +NLG+NP +G+V+RI VP TEERR LVK Sbjct: 59 PEARLLVISPYDKTSVKDIERAIIAANLGVNPTSDGEVIRITVPALTEERRKELVKDVKK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E +K+S+RNIRRD D LKK K+G +ED + S +D+QK TD +IK ID +K+ Sbjct: 119 VGEDAKVSIRNIRRDINDQLKKDEKNGDITEDDLRSQSDDVQKATDDSIKEIDQLVGDKE 178 Query: 181 KEIMHF 186 K+IM Sbjct: 179 KDIMSV 184 >gi|153207713|ref|ZP_01946360.1| ribosome recycling factor [Coxiella burnetii 'MSU Goat Q177'] gi|154705951|ref|YP_001424018.1| ribosome recycling factor [Coxiella burnetii Dugway 5J108-111] gi|165919005|ref|ZP_02219091.1| ribosome recycling factor [Coxiella burnetii RSA 334] gi|212212246|ref|YP_002303182.1| ribosome recycling factor [Coxiella burnetii CbuG_Q212] gi|212218981|ref|YP_002305768.1| ribosome recycling factor [Coxiella burnetii CbuK_Q154] gi|189044052|sp|A9KBR6|RRF_COXBN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226749925|sp|B6J8M4|RRF_COXB1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226749926|sp|B6IZA9|RRF_COXB2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|120576409|gb|EAX33033.1| ribosome recycling factor [Coxiella burnetii 'MSU Goat Q177'] gi|154355237|gb|ABS76699.1| ribosome recycling factor [Coxiella burnetii Dugway 5J108-111] gi|165917330|gb|EDR35934.1| ribosome recycling factor [Coxiella burnetii RSA 334] gi|212010656|gb|ACJ18037.1| ribosome Recycling Factor (RRF) [Coxiella burnetii CbuG_Q212] gi|212013243|gb|ACJ20623.1| ribosome recycling factor [Coxiella burnetii CbuK_Q154] Length = 185 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 71/186 (38%), Positives = 116/186 (62%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N +I+ + K RM ++ LK ++ LRTGR PS+L+ +KV+ Y PL+QVA++ + Sbjct: 2 INDIIN--DSKSRMEKSLGSLKTELAKLRTGRAHPSLLEHIKVDYYNVETPLSQVASIAI 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 PR L ++ W+K MV +E+ I +++LGLNP G V+R+P+P TEERR L +V Sbjct: 60 ENPRTLSITPWEKNMVGPIEKAIQKADLGLNPATVGMVIRVPLPPLTEERRKELARVVRE 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE +++++RNIRR+ + LK+ K + SED + IQK+TD+ I +D +K+ Sbjct: 120 EAEHARVAIRNIRREANNDLKELMKEKEISEDEERRAQTAIQKLTDAQIAEVDKMASQKE 179 Query: 181 KEIMHF 186 ++M Sbjct: 180 ADLMAV 185 >gi|312829653|emb|CBX34495.1| ribosome recycling factor [Staphylococcus aureus subsp. aureus ECT-R 2] Length = 184 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 79/186 (42%), Positives = 118/186 (63%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ +I+ K RM +I L +++ + GR + ++L+ V V+ YG+ P+ Q+A++ V Sbjct: 1 MSDIIN--ETKSRMQKSIESLSRELANISAGRANSNLLNGVTVDYYGAPTPVQQLASINV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R+LV+S +DK VA +E+ I +NLG+NP G+V+RI VP TEERR VK Sbjct: 59 PEARLLVISPYDKTSVADIEKAIIAANLGVNPTSNGEVIRIAVPALTEERRKERVKDVKK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E++K+SVRNIRRD D LKK K+G +ED + S D+QK TD++IK ID +K+ Sbjct: 119 IGEEAKVSVRNIRRDMNDQLKKDEKNGDITEDELRSGTEDVQKATDNSIKEIDQMIADKE 178 Query: 181 KEIMHF 186 K+IM Sbjct: 179 KDIMSV 184 >gi|312864198|ref|ZP_07724432.1| ribosome recycling factor [Streptococcus vestibularis F0396] gi|322517322|ref|ZP_08070197.1| ribosome recycling factor [Streptococcus vestibularis ATCC 49124] gi|311100199|gb|EFQ58408.1| ribosome recycling factor [Streptococcus vestibularis F0396] gi|322124019|gb|EFX95572.1| ribosome recycling factor [Streptococcus vestibularis ATCC 49124] Length = 185 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 78/180 (43%), Positives = 116/180 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+R + L ++ +R GR + S+LD + VE YG+ PLNQ+A++TV E R+L Sbjct: 6 IEKAKERFAHSHESLAREFGAIRAGRANASLLDRITVEYYGAPTPLNQLASITVPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +DK +A +ER I+ES+LG+NP +G V+R+ +P TEE R L K E +K Sbjct: 66 LISPFDKGSIADIERAINESDLGINPANDGSVVRLVIPALTEETRKELAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIRRD MD KK K + +ED + +LE DIQK TD +K IDS EK+KE++ Sbjct: 126 IAIRNIRRDAMDEAKKQEKDKEITEDQLKALEKDIQKATDDAVKKIDSMTAEKEKELLTV 185 >gi|257439607|ref|ZP_05615362.1| ribosome recycling factor [Faecalibacterium prausnitzii A2-165] gi|257197974|gb|EEU96258.1| ribosome recycling factor [Faecalibacterium prausnitzii A2-165] Length = 184 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 70/181 (38%), Positives = 118/181 (65%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 + + +++M ++ L +++ +R GR +P++LD V V+ YG+ P+ QVA+V V E R Sbjct: 4 NTKAFEEKMKSSVEHLDRELAAVRAGRANPAVLDKVSVDYYGAPTPIQQVASVAVSEART 63 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 L ++ WD+ ++ ++ + I S++G+ PI +G +R+ P TEERR L K E++ Sbjct: 64 LTITPWDRTLLRAISKAIMASDVGITPIDDGSTIRLNFPAPTEERRKQLAKEVAKLGEEA 123 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 K++VRN+RRD MD K +K+G+ +ED ++E ++QK+TD IKNID+ EEK+KEIM Sbjct: 124 KVAVRNVRRDAMDKAKAMKKAGELTEDTQKTMEEEVQKLTDKYIKNIDAAVEEKQKEIMS 183 Query: 186 F 186 Sbjct: 184 V 184 >gi|255263510|ref|ZP_05342852.1| ribosome recycling factor [Thalassiobium sp. R2A62] gi|255105845|gb|EET48519.1| ribosome recycling factor [Thalassiobium sp. R2A62] Length = 187 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 85/182 (46%), Positives = 122/182 (67%), Gaps = 1/182 (0%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 ID ++ RM ++ L+ + +LRTGR S SML+ V V+AYG+ P+NQV V V EPR Sbjct: 7 IDTDDLTRRMDGAMANLRTEFASLRTGRASGSMLEPVMVDAYGTMTPINQVGTVNVPEPR 66 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ ++VWDK +V VE+ I ES LG+NP + G ++ +P+PE EERR L KVA +YAE Sbjct: 67 MVTINVWDKGLVNKVEKAIRESGLGINPQMNGTIIMLPIPELNEERRRELTKVAASYAEN 126 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++SVRN+RRDGM +KK + +G ED E ++Q++TDS IK +D E K++EIM Sbjct: 127 ARVSVRNVRRDGMVQIKKGKAAG-MPEDDQKLWETEVQELTDSFIKQVDGALETKQEEIM 185 Query: 185 HF 186 Sbjct: 186 QV 187 >gi|254449718|ref|ZP_05063155.1| ribosome recycling factor [Octadecabacter antarcticus 238] gi|198264124|gb|EDY88394.1| ribosome recycling factor [Octadecabacter antarcticus 238] Length = 187 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 83/185 (44%), Positives = 121/185 (65%), Gaps = 1/185 (0%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 + ++D ++ RM I+ L+ + +LRTGR S S+L+ + V+AYGS P+NQV V V Sbjct: 4 DFILDTDDLTRRMDGAIANLRVEFASLRTGRASASILEPIMVDAYGSQTPINQVGTVNVP 63 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 E RM+ V+VWDK +V+ VE+ I ES LG+NP + G ++ +P+PE EERR L KVA Y Sbjct: 64 ESRMVTVNVWDKGLVSKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRTQLTKVAGTY 123 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 AE ++S+RN+RRDGMD +KK++ G SED E +Q++T+ IK +D E K+ Sbjct: 124 AENGRVSIRNVRRDGMDQVKKAKNDG-MSEDDQKFWEGAVQEMTNDYIKRVDDQLEIKQA 182 Query: 182 EIMHF 186 EIM Sbjct: 183 EIMQV 187 >gi|329893773|ref|ZP_08269861.1| Ribosome recycling factor [gamma proteobacterium IMCC3088] gi|328923496|gb|EGG30810.1| Ribosome recycling factor [gamma proteobacterium IMCC3088] Length = 185 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + + RM +I L + +RTGR PS+LD +KVE YGS PLNQVAN+ + + R L Sbjct: 7 EEAQARMQKSIEALGHNFNKIRTGRAHPSLLDGIKVEYYGSDTPLNQVANINIEDARTLS 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + VWD+ M+++VE+ I +S+LGLNP G+V+RIP+P TEE R +K A A AE +++ Sbjct: 67 LQVWDRTMISAVEKAIMKSDLGLNPSSAGEVIRIPMPMLTEETRKGYIKQARAEAEAARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RN RRD M LK K + SED ++++QK+TD +K +D K+ ++M Sbjct: 127 SLRNARRDAMSMLKDLVKEKEISEDDERRGQDEVQKLTDKMVKKVDELLAAKEADLMEI 185 >gi|325267098|ref|ZP_08133767.1| ribosome recycling factor [Kingella denitrificans ATCC 33394] gi|324981451|gb|EGC17094.1| ribosome recycling factor [Kingella denitrificans ATCC 33394] Length = 185 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 71/179 (39%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + +++M ++ L++++ +RTGR +LD V VE +GS VP++QV NVT+L+ R + Sbjct: 7 KTAENKMQRSLEVLRENLAKVRTGRAHTGLLDQVTVEYWGSEVPVSQVGNVTLLDARTIG 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V ++ M A +E+ I +SNLGLNP G ++R+P+P TEERR L+KV AE ++ Sbjct: 67 VKPFESNMAAKIEKAIRDSNLGLNPSSVGDLIRVPMPMLTEERRKDLIKVVRGEAEDGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RN+RRD DH+KK K + SED E +QK+TD I ++D K++++M Sbjct: 127 SIRNVRRDANDHVKKLLKDKEISEDEARRAEESVQKLTDKYIADVDKMLAAKEEDLMAI 185 >gi|225858740|ref|YP_002740250.1| ribosome recycling factor [Streptococcus pneumoniae 70585] gi|289167793|ref|YP_003446062.1| ribosome recycling factor [Streptococcus mitis B6] gi|307704917|ref|ZP_07641808.1| ribosome recycling factor [Streptococcus mitis SK597] gi|307706446|ref|ZP_07643255.1| ribosome recycling factor [Streptococcus mitis SK321] gi|307708583|ref|ZP_07645047.1| ribosome recycling factor [Streptococcus mitis NCTC 12261] gi|307709131|ref|ZP_07645590.1| ribosome recycling factor [Streptococcus mitis SK564] gi|322376444|ref|ZP_08050937.1| ribosome recycling factor [Streptococcus sp. M334] gi|254809532|sp|C1C6S4|RRF_STRP7 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|225721445|gb|ACO17299.1| ribosome recycling factor [Streptococcus pneumoniae 70585] gi|288907360|emb|CBJ22197.1| ribosome recycling factor [Streptococcus mitis B6] gi|301801786|emb|CBW34497.1| ribosome recycling factor [Streptococcus pneumoniae INV200] gi|307615332|gb|EFN94541.1| ribosome recycling factor [Streptococcus mitis NCTC 12261] gi|307618156|gb|EFN97314.1| ribosome recycling factor [Streptococcus mitis SK321] gi|307620077|gb|EFN99194.1| ribosome recycling factor [Streptococcus mitis SK564] gi|307621531|gb|EFO00577.1| ribosome recycling factor [Streptococcus mitis SK597] gi|321282251|gb|EFX59258.1| ribosome recycling factor [Streptococcus sp. M334] Length = 185 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 114/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+RM + L ++ +R GR + S+LD V VE YG PLNQ+A++T+ E R+L Sbjct: 6 IEKAKERMTQSHQSLAREFGGIRAGRANASLLDRVHVEYYGVETPLNQIASITIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + +ER ++ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD MD KK K+ + +ED + +LE DIQK+TD +K+ID K+KE++ Sbjct: 126 VAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELLEV 185 >gi|293365195|ref|ZP_06611912.1| ribosome recycling factor [Streptococcus oralis ATCC 35037] gi|307703733|ref|ZP_07640674.1| ribosome recycling factor [Streptococcus oralis ATCC 35037] gi|291316645|gb|EFE57081.1| ribosome recycling factor [Streptococcus oralis ATCC 35037] gi|307622568|gb|EFO01564.1| ribosome recycling factor [Streptococcus oralis ATCC 35037] Length = 185 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 71/180 (39%), Positives = 114/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+RM + L ++ +R GR + S+LD + VE YG PLNQ+A++T+ E R+L Sbjct: 6 VEKAKERMTQSHQSLAREFGGIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +D+ + +ER ++ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LVTPFDRSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD MD KK K+ + +ED + +LE DIQK+TD +K+ID K+KE++ Sbjct: 126 VAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELLEV 185 >gi|226945938|ref|YP_002801011.1| ribosome recycling factor [Azotobacter vinelandii DJ] gi|259494533|sp|C1DSU3|RRF_AZOVD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226720865|gb|ACO80036.1| ribosome recycling factor [Azotobacter vinelandii DJ] Length = 185 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 71/179 (39%), Positives = 106/179 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM ++ L+ +RTGR PS+LD V V YG+ PL QVANV + R L Sbjct: 7 KDAQARMKKSLESLEHAFAKIRTGRAHPSILDGVMVSYYGADTPLRQVANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DK M+ +VE+ I S+LGLNP G +R+P+P TEE R + A A AE +++ Sbjct: 67 LTVFDKSMIQAVEKAIMTSDLGLNPATAGTTIRVPMPALTEETRKGYTRQARAEAESARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD + LK K + SED +++QK+TD I +D E K+ ++M Sbjct: 127 AVRNIRRDALAQLKDLVKEKEISEDEERRAADEVQKLTDKAIAEVDKALEAKEADLMAV 185 >gi|325105870|ref|YP_004275524.1| ribosome recycling factor [Pedobacter saltans DSM 12145] gi|324974718|gb|ADY53702.1| ribosome recycling factor [Pedobacter saltans DSM 12145] Length = 187 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 86/188 (45%), Positives = 116/188 (61%), Gaps = 3/188 (1%) Query: 1 MNQVI--DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 MN+ I +L+ K M I+ ++M +R G+ SPSMLD V VE YGS PL QVAN+ Sbjct: 1 MNEFIKLELEEAKATMQKAITHTDNELMKIRAGKASPSMLDGVLVEYYGSPTPLAQVANI 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 + R +VV W+K M+ +E+GI SN GLNP +G V+R+ VP TEERR LVK A Sbjct: 61 NTPDARTIVVQPWEKSMIGPIEKGILNSNCGLNPQNDGSVVRLNVPPLTEERRKQLVKQA 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 AE KIS+RNIR++ + +KK + G SED + + E ++QKITD I ID E Sbjct: 121 KEEAEAGKISIRNIRKNTNESIKKLKSEG-VSEDEIKAGEAEVQKITDGFIAKIDVMIEG 179 Query: 179 KKKEIMHF 186 K+K+IM Sbjct: 180 KEKDIMTV 187 >gi|28198252|ref|NP_778566.1| ribosome recycling factor [Xylella fastidiosa Temecula1] gi|32129996|sp|Q87EH6|RRF_XYLFT RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|28056322|gb|AAO28215.1| ribosome recycling factor [Xylella fastidiosa Temecula1] gi|307579357|gb|ADN63326.1| ribosome recycling factor [Xylella fastidiosa subsp. fastidiosa GB514] Length = 185 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 82/179 (45%), Positives = 122/179 (68%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ +DRM +I L+ + ++RTGR SPS+LD +K++AYG+ PLNQVA+++V E R LV Sbjct: 7 QDAQDRMTKSIDALRNSLASVRTGRASPSLLDGIKIKAYGTDTPLNQVASISVSEGRSLV 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DK M VE+ I+ S+LGL P V G ++R+ +P TEERR L KV H+ E +K+ Sbjct: 67 ITVFDKNMSKDVEKAIYASDLGLTPTVVGTLIRLNLPPLTEERRKELTKVVHSEGEDTKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD +K KS + +ED V E DIQK+TD IK++D + K++E+M Sbjct: 127 AIRNIRRDANQQIKDMLKSKEITEDEVRHGEEDIQKLTDKAIKSVDEVVKSKEQELMTV 185 >gi|227510244|ref|ZP_03940293.1| ribosome recycling factor [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227513173|ref|ZP_03943222.1| ribosome recycling factor [Lactobacillus buchneri ATCC 11577] gi|227083554|gb|EEI18866.1| ribosome recycling factor [Lactobacillus buchneri ATCC 11577] gi|227189896|gb|EEI69963.1| ribosome recycling factor [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 187 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 67/179 (37%), Positives = 121/179 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K +M L+ ++ ++R GR + S+L V V+ YG+ PLNQ+A++++ E R++ Sbjct: 8 LNEAKTKMKKAQEVLEHELGSIRAGRANASLLSGVTVDYYGAPTPLNQIASISIPEARVI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK + ++E+GI+E++LGL+P +G +R+ +P TEERR + K A EKSK Sbjct: 68 LITPYDKSSLDNIEKGIYEADLGLSPANDGTAIRLAIPALTEERRKEVAKQVKATGEKSK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRN+RR+ MD K+ KS + ++D + LE+ +QK+TD++IK++D +K+ E+M+ Sbjct: 128 VAVRNVRREAMDTFKRGNKSEEITDDELHRLEDQVQKLTDNSIKSVDKIVADKENEVMN 186 >gi|33239972|ref|NP_874914.1| ribosome recycling factor [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|39932093|sp|Q7VD62|RRF_PROMA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|33237498|gb|AAP99566.1| Ribosome recycling factor [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 182 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 65/179 (36%), Positives = 108/179 (60%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q ++ M ++ +++ T+RTGR + S+LD + VE YG+ PL +A ++ + + L Sbjct: 4 QEVELNMQKSVEACQRNFNTIRTGRANTSLLDRLTVEYYGADTPLKSLATISTPDSQTLA 63 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +D + +E+ I S+LG P +G+++RI +P TEERR K+A YAE++KI Sbjct: 64 IQPFDLGSLGLIEKAISISDLGFTPNNDGKIIRINIPPLTEERRKQFCKLASKYAEEAKI 123 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RNIRRD ++ +K S K G+ SED ++ IQKIT+ I I+ K++EI+ Sbjct: 124 SLRNIRRDAIEKIKGSEKDGEFSEDQSRDQQDSIQKITNKYINEIEKNLSGKEEEILKV 182 >gi|254805769|ref|YP_003083990.1| Ribosome recycling factor [Neisseria meningitidis alpha14] gi|254669311|emb|CBA08313.1| Ribosome recycling factor [Neisseria meningitidis alpha14] gi|316985712|gb|EFV64658.1| ribosome recycling factor [Neisseria meningitidis H44/76] Length = 208 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 77/186 (41%), Positives = 117/186 (62%), Gaps = 1/186 (0%) Query: 2 NQVIDLQN-IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 N + D+Q + +M ++ LK+++ +RTGR +LD V+VE +GS VP++QVANVT+ Sbjct: 23 NMINDIQKTAEGKMQRSVEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVANVTL 82 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 L+ R + V ++ M A VE+ I +SNLGLNP G ++R+P+P TEERR L+KV Sbjct: 83 LDARTIGVKPFEGNMAAKVEKAIRDSNLGLNPAAVGDLIRVPMPMLTEERRKDLIKVVRG 142 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE+ ++S+RN+RRD DH+KK K + SED E +QK+TD I D K+ Sbjct: 143 EAEEGRVSIRNVRRDANDHIKKLLKDKEISEDEARRGEEAVQKLTDKYITEADKLLTAKE 202 Query: 181 KEIMHF 186 +++M Sbjct: 203 EDLMAI 208 >gi|301794085|emb|CBW36491.1| ribosome recycling factor [Streptococcus pneumoniae INV104] gi|332204947|gb|EGJ19012.1| ribosome recycling factor [Streptococcus pneumoniae GA47901] Length = 185 Score = 231 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 114/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+RM + L ++ +R GR + S+LD + VE YG PLNQ+A++T+ E R+L Sbjct: 6 IEKAKERMTQSHQSLAREFGGIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + +ER ++ S+LG+ P +G V+R+ VP TEE R L K E +K Sbjct: 66 LVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVVPALTEETRRDLAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD MD KK K+ + +ED + +LE DIQK+TD +K+ID K+KE++ Sbjct: 126 VAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELLEV 185 >gi|294677163|ref|YP_003577778.1| ribosome recycling factor [Rhodobacter capsulatus SB 1003] gi|294475983|gb|ADE85371.1| ribosome recycling factor [Rhodobacter capsulatus SB 1003] Length = 187 Score = 231 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 84/182 (46%), Positives = 121/182 (66%), Gaps = 1/182 (0%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 ID +++ RM + LK + TLRTGR S SM++ + V+AYGS VP+NQV + V EPR Sbjct: 7 IDTDDLERRMEGAMHALKHEFGTLRTGRASASMVEPIMVDAYGSLVPINQVGTINVPEPR 66 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ V+VWDK M+ VE+ I +S LG+NP G ++ +P+PE EERR L KVA YAE Sbjct: 67 MVTVNVWDKGMINKVEKAIRDSGLGINPQTNGPIIMLPIPELNEERRRELTKVAAQYAEH 126 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++++RN+RRDGMD +KK++ +G SED E +I+++T I +D E K+ EIM Sbjct: 127 ARVAIRNVRRDGMDQIKKAKANG-MSEDDQKFWEGEIEELTKKHIGLVDKALEGKQAEIM 185 Query: 185 HF 186 H Sbjct: 186 HV 187 >gi|312898662|ref|ZP_07758052.1| ribosome recycling factor [Megasphaera micronuciformis F0359] gi|310620581|gb|EFQ04151.1| ribosome recycling factor [Megasphaera micronuciformis F0359] Length = 186 Score = 231 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 78/180 (43%), Positives = 118/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + + TI K+++ ++RTGR S S+LD V V+ YG+ P+NQVANV+ EPR++ Sbjct: 7 LNECEAKADKTIENFKRNLSSIRTGRASTSLLDRVSVDYYGTPTPVNQVANVSAPEPRLI 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +S W++ M+ +E+ I +S+LGLNP +G ++R+ +P+ TEERR L K AE +K Sbjct: 67 TISPWERTMLGEIEKAILKSDLGLNPNNDGTIIRLEIPQLTEERRKELSKKVGKEAEDAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD D +KKS K + +ED + IQKITD+ IK ID ++K+KE+M Sbjct: 127 VAVRNIRRDSNDAVKKSEKKKEITEDDSKEAQTKIQKITDAKIKQIDEIKDKKEKEVMEV 186 >gi|307111396|gb|EFN59630.1| hypothetical protein CHLNCDRAFT_29191 [Chlorella variabilis] Length = 255 Score = 231 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 66/187 (35%), Positives = 110/187 (58%), Gaps = 8/187 (4%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++M ++ +K+ T+RTGR + +MLD ++ + YG+ PL VA+V+ E +LV Sbjct: 69 EDTMEKMEKSVESVKRSFGTVRTGRANAAMLDRIEFDYYGAMTPLRTVASVSTPESTLLV 128 Query: 68 VS--------VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 + +D + ++ER I +S+LGL P +G+V+R+ VP+ T ERR +VK+ Sbjct: 129 IQARALLAAAPYDTSAIPAIERAIMQSDLGLTPNNDGRVIRLQVPQLTAERRKEMVKIVS 188 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 E+ K++VRN+RRD M ++K K G SED LEN +QK+TD +K I+ + K Sbjct: 189 KLGEEGKVAVRNVRRDAMKAIEKLEKDGGISEDQRKDLENAVQKLTDEYVKEIEGLAKSK 248 Query: 180 KKEIMHF 186 E+ Sbjct: 249 SDELTKV 255 >gi|306819855|ref|ZP_07453509.1| ribosome recycling factor [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304552102|gb|EFM40039.1| ribosome recycling factor [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 185 Score = 231 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q ++M TIS LK+D+ T+RTGR +P MLD + V+ YG+ P+ Q+A ++ +PR L Sbjct: 7 QTTNEKMEKTISVLKEDLNTIRTGRANPKMLDKLTVDYYGTVTPVKQIAAISSPDPRTLQ 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + WDK + +E+ I ++LG+NP +G ++RI +P+ TEERR LVK A E++K+ Sbjct: 67 IQPWDKSSLHLIEKAIQVADLGVNPTNDGLIIRISIPQLTEERRKELVKQAQKMGEQAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD D +KK K G +ED +DIQK+TD IK ID K+K+I Sbjct: 127 AIRNLRRDANDLIKKGEKDGSIAEDEAKKELDDIQKLTDEHIKAIDGVIANKEKDIKEI 185 >gi|256832239|ref|YP_003160966.1| ribosome recycling factor [Jonesia denitrificans DSM 20603] gi|256685770|gb|ACV08663.1| ribosome recycling factor [Jonesia denitrificans DSM 20603] Length = 185 Score = 231 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 61/186 (32%), Positives = 108/186 (58%), Gaps = 1/186 (0%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ I L +++M + K++ +RTGR + +M + V+ YG+ PL Q+A++ + Sbjct: 1 MSDEI-LLEAEEKMDRAVEVAKEEFAAIRTGRANAAMFSKITVDYYGAPTPLQQLASMNI 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R +++S +DK ++ +E+ + +S+LG+NP +G +RI +P TEERR VK+A Sbjct: 60 PEARTVLISPYDKSAMSLIEKALRDSDLGVNPSNDGNAIRINLPALTEERRRDYVKLAKN 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E+ ++SVRNIRR D L + K G+ SED E +++ +T + ID+ K+ Sbjct: 120 KGEEGRVSVRNIRRKAKDQLDRLVKDGELSEDEGTRAEKELEALTRRHVDEIDTLLAGKE 179 Query: 181 KEIMHF 186 E++ Sbjct: 180 AELLEV 185 >gi|119487064|ref|ZP_01620936.1| ribosome releasing factor [Lyngbya sp. PCC 8106] gi|119455993|gb|EAW37127.1| ribosome releasing factor [Lyngbya sp. PCC 8106] Length = 182 Score = 231 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 65/177 (36%), Positives = 104/177 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++ M + ++ T+RTGR + S+LD V VE YG+ L +A + + + Sbjct: 3 LAEVESLMQKAVESTQRSFNTIRTGRANTSLLDRVMVEYYGTPTSLKSLATINTPDSSTI 62 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D++ + +E+ I S++GL P +G ++R+ +P T ERR VK+A YAE+ K Sbjct: 63 MIQPFDRKTLDIIEKAISLSDVGLTPNNDGSIIRLNIPPLTSERRQEFVKLASKYAEEGK 122 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +SVRN+RRD +D ++K KS SED L++ IQK+TD ID FE K K+I Sbjct: 123 VSVRNVRRDAVDSVRKQEKSKDLSEDEARDLQDQIQKLTDKYTAKIDEMFEAKDKDI 179 >gi|254819038|ref|ZP_05224039.1| ribosome recycling factor [Mycobacterium intracellulare ATCC 13950] Length = 185 Score = 231 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 65/180 (36%), Positives = 109/180 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++M ++ + D+ T+RTGR +P M + ++ YG+ P+ Q+A++ V E R++ Sbjct: 6 LFDAEEKMEKAVAVARDDLSTIRTGRANPGMFSRIVIDYYGAATPITQLASINVPEARLV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ ++ V ++E I S+LG+NP +G ++R+ VP+ TEERR LVK A + E +K Sbjct: 66 VIKPYEASQVGAIETAIRNSDLGVNPTNDGTLIRVAVPQLTEERRRELVKQAKSKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +SVRNIRR M+ L + RK G+A ED V E D+ K T I+ + K+ E++ Sbjct: 126 VSVRNIRRKAMEELHRIRKDGEAGEDEVGRAEKDLDKTTHQYTTQIEELVKHKEGELLEV 185 >gi|108798972|ref|YP_639169.1| ribosome recycling factor [Mycobacterium sp. MCS] gi|119868087|ref|YP_938039.1| ribosome recycling factor [Mycobacterium sp. KMS] gi|126434572|ref|YP_001070263.1| ribosome recycling factor [Mycobacterium sp. JLS] gi|123070322|sp|Q1BAH1|RRF_MYCSS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166230802|sp|A3PXZ5|RRF_MYCSJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166230803|sp|A1UEJ1|RRF_MYCSK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|108769391|gb|ABG08113.1| ribosome recycling factor [Mycobacterium sp. MCS] gi|119694176|gb|ABL91249.1| ribosome recycling factor [Mycobacterium sp. KMS] gi|126234372|gb|ABN97772.1| ribosome recycling factor [Mycobacterium sp. JLS] Length = 185 Score = 231 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 65/180 (36%), Positives = 111/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++M +S + D+ ++RTGR +P M + V+ YG+ P+ Q++++ V E RM+ Sbjct: 6 LFDAEEKMEKAVSVARDDLSSIRTGRANPGMFSRINVDYYGATTPITQLSSINVPEARMV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ ++ + ++E I S+LG+NP +G ++R+ +P+ TEERR LVK A A E +K Sbjct: 66 VIKPYEANQLRNIEDAIRNSDLGVNPTNDGNIIRVSIPQLTEERRRDLVKQAKAKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +SVRNIRR M+ L + +K G+A ED V+ E D+ K T + ID + K+ E++ Sbjct: 126 VSVRNIRRKAMEELARIKKDGEAGEDEVSRAEKDLDKTTHTYTHQIDELVKHKEGELLEV 185 >gi|213964585|ref|ZP_03392785.1| ribosome recycling factor [Corynebacterium amycolatum SK46] gi|213952778|gb|EEB64160.1| ribosome recycling factor [Corynebacterium amycolatum SK46] Length = 185 Score = 231 bits (591), Expect = 3e-59, Method: Composition-based stats. Identities = 68/180 (37%), Positives = 119/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++ G ++ ++++ +RTGR +P+M + V E YG P+ Q+A ++V EPRML Sbjct: 6 LLDCEEKYGSSVEHCREELTHIRTGRANPAMFNGVIAEYYGVPTPITQMATISVPEPRML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ ++ ++ +E I S+LG+NP +GQVLR+ +P+ TEERR +VKV+ + E +K Sbjct: 66 LIKPYELSVMGDIENAIRNSDLGVNPTNDGQVLRVTIPQLTEERRREMVKVSRSKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RN+RR GM+ LKK +K G A ED V + E ++ ++T + ++ +DS E K+ E+M Sbjct: 126 IAIRNVRRKGMETLKKIQKDGDAGEDEVQAGEKELDQVTKNYVEQVDSLVERKEAELMEV 185 >gi|270292949|ref|ZP_06199160.1| ribosome recycling factor [Streptococcus sp. M143] gi|270278928|gb|EFA24774.1| ribosome recycling factor [Streptococcus sp. M143] Length = 185 Score = 231 bits (591), Expect = 3e-59, Method: Composition-based stats. Identities = 72/180 (40%), Positives = 114/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+RM + L ++ +R GR + S+LD + VE YG PLNQ+A++T+ E R+L Sbjct: 6 VEKAKERMTQSHQSLAREFGGIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + +ER ++ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD MD KK K+ + +ED + +LE DIQK+TD +K+ID K+KE++ Sbjct: 126 VAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELLEV 185 >gi|115472897|ref|NP_001060047.1| Os07g0570700 [Oryza sativa Japonica Group] gi|158513666|sp|A2YMU2|RRFC_ORYSI RecName: Full=Ribosome-recycling factor, chloroplastic; Short=RRF; AltName: Full=Protein OsL8; AltName: Full=Ribosome-releasing factor, chloroplastic; Flags: Precursor gi|158513703|sp|A3BLC3|RRFC_ORYSJ RecName: Full=Ribosome-recycling factor, chloroplastic; Short=RRF; AltName: Full=Protein OsL8; AltName: Full=Ribosome-releasing factor, chloroplastic; Flags: Precursor gi|34394208|dbj|BAC84660.1| putative Ribosome recycling factor, chloroplast precursor [Oryza sativa Japonica Group] gi|113611583|dbj|BAF21961.1| Os07g0570700 [Oryza sativa Japonica Group] gi|218199871|gb|EEC82298.1| hypothetical protein OsI_26546 [Oryza sativa Indica Group] gi|222637311|gb|EEE67443.1| hypothetical protein OsJ_24808 [Oryza sativa Japonica Group] Length = 266 Score = 231 bits (591), Expect = 3e-59, Method: Composition-based stats. Identities = 65/179 (36%), Positives = 107/179 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++RM I ++ + T+RTGR +P+MLD ++VE YG+ V L +A + + L+ Sbjct: 88 DQARERMEKAIETVQNNFNTVRTGRANPAMLDRIEVEYYGTPVNLKSIAQINTPDATSLL 147 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +DK + +E+ I +NLG+ P +G+V+R+ VP T +RR L K AE+ K+ Sbjct: 148 IQPYDKSSLKLIEKTIVAANLGVTPSNDGEVIRVTVPPLTSDRRKELAKTVAKLAEEGKV 207 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD + K K K SED V L D+QK+TD +K I++ ++K++E+M Sbjct: 208 AIRNIRRDAIKAYDKLEKEKKLSEDNVKDLSADLQKVTDEYMKKIEAIQKQKEQELMKI 266 >gi|15610019|ref|NP_217398.1| ribosome recycling factor [Mycobacterium tuberculosis H37Rv] gi|15842423|ref|NP_337460.1| ribosome recycling factor [Mycobacterium tuberculosis CDC1551] gi|31794058|ref|NP_856551.1| ribosome recycling factor [Mycobacterium bovis AF2122/97] gi|148662726|ref|YP_001284249.1| ribosome recycling factor [Mycobacterium tuberculosis H37Ra] gi|148824071|ref|YP_001288825.1| ribosome recycling factor [Mycobacterium tuberculosis F11] gi|167969509|ref|ZP_02551786.1| ribosome recycling factor [Mycobacterium tuberculosis H37Ra] gi|215404856|ref|ZP_03417037.1| ribosome recycling factor [Mycobacterium tuberculosis 02_1987] gi|215412723|ref|ZP_03421435.1| ribosome recycling factor [Mycobacterium tuberculosis 94_M4241A] gi|215428323|ref|ZP_03426242.1| ribosome recycling factor [Mycobacterium tuberculosis T92] gi|215431829|ref|ZP_03429748.1| ribosome recycling factor [Mycobacterium tuberculosis EAS054] gi|215447144|ref|ZP_03433896.1| ribosome recycling factor [Mycobacterium tuberculosis T85] gi|218754634|ref|ZP_03533430.1| ribosome recycling factor [Mycobacterium tuberculosis GM 1503] gi|219558903|ref|ZP_03537979.1| ribosome recycling factor [Mycobacterium tuberculosis T17] gi|253798030|ref|YP_003031031.1| ribosome recycling factor frr [Mycobacterium tuberculosis KZN 1435] gi|254232977|ref|ZP_04926304.1| ribosome recycling factor frr (ribosome releasing factor) [Mycobacterium tuberculosis C] gi|254365523|ref|ZP_04981568.1| ribosome recycling factor frr (ribosome releasing factor) [Mycobacterium tuberculosis str. Haarlem] gi|254551951|ref|ZP_05142398.1| ribosome recycling factor [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187900|ref|ZP_05765374.1| ribosome recycling factor [Mycobacterium tuberculosis CPHL_A] gi|260202016|ref|ZP_05769507.1| ribosome recycling factor [Mycobacterium tuberculosis T46] gi|260206197|ref|ZP_05773688.1| ribosome recycling factor [Mycobacterium tuberculosis K85] gi|289444437|ref|ZP_06434181.1| ribosome recycling factor [Mycobacterium tuberculosis T46] gi|289448548|ref|ZP_06438292.1| ribosome recycling factor frr [Mycobacterium tuberculosis CPHL_A] gi|289553329|ref|ZP_06442539.1| ribosome recycling factor frr [Mycobacterium tuberculosis KZN 605] gi|289571072|ref|ZP_06451299.1| ribosome recycling factor frr [Mycobacterium tuberculosis T17] gi|289575587|ref|ZP_06455814.1| ribosome recycling factor frr [Mycobacterium tuberculosis K85] gi|289746681|ref|ZP_06506059.1| ribosome recycling factor frr [Mycobacterium tuberculosis 02_1987] gi|289751547|ref|ZP_06510925.1| ribosome recycling factor frr [Mycobacterium tuberculosis T92] gi|289754994|ref|ZP_06514372.1| ribosome recycling factor frr [Mycobacterium tuberculosis EAS054] gi|289759003|ref|ZP_06518381.1| ribosome releasing factor [Mycobacterium tuberculosis T85] gi|289763059|ref|ZP_06522437.1| ribosome recycling factor frr (ribosome releasing factor) [Mycobacterium tuberculosis GM 1503] gi|294994025|ref|ZP_06799716.1| ribosome recycling factor [Mycobacterium tuberculosis 210] gi|297635498|ref|ZP_06953278.1| ribosome recycling factor [Mycobacterium tuberculosis KZN 4207] gi|297732497|ref|ZP_06961615.1| ribosome recycling factor [Mycobacterium tuberculosis KZN R506] gi|298526351|ref|ZP_07013760.1| ribosome recycling factor frr (ribosome releasing factor) [Mycobacterium tuberculosis 94_M4241A] gi|306777168|ref|ZP_07415505.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu001] gi|306781075|ref|ZP_07419412.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu002] gi|306785714|ref|ZP_07424036.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu003] gi|306789754|ref|ZP_07428076.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu004] gi|306794568|ref|ZP_07432870.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu005] gi|306798809|ref|ZP_07437111.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu006] gi|306804656|ref|ZP_07441324.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu008] gi|306808849|ref|ZP_07445517.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu007] gi|306968949|ref|ZP_07481610.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu009] gi|306973285|ref|ZP_07485946.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu010] gi|307080993|ref|ZP_07490163.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu011] gi|307085590|ref|ZP_07494703.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu012] gi|313659830|ref|ZP_07816710.1| ribosome recycling factor [Mycobacterium tuberculosis KZN V2475] gi|54039295|sp|P66735|RRF_MYCBO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|54042003|sp|P66734|RRF_MYCTU RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166230804|sp|A5U6N7|RRF_MYCTA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|61680226|pdb|1WQF|A Chain A, Crystal Structure Of Ribosome Recycling Factor From Mycobacterium Tuberculosis gi|61680227|pdb|1WQG|A Chain A, Crystal Structure Of Ribosome Recycling Factor From Mycobacterium Tuberculosis gi|61680228|pdb|1WQH|A Chain A, Crystal Structure Of Ribosome Recycling Factor From Mycobacterium Tuberculosis gi|1403402|emb|CAA98358.1| RIBOSOME RECYCLING FACTOR FRR (RIBOSOME RELEASING FACTOR) (RRF) [Mycobacterium tuberculosis H37Rv] gi|13882725|gb|AAK47274.1| ribosome recycling factor [Mycobacterium tuberculosis CDC1551] gi|31619653|emb|CAD96593.1| RIBOSOME RECYCLING FACTOR FRR (RIBOSOME RELEASING FACTOR) (RRF) [Mycobacterium bovis AF2122/97] gi|124602036|gb|EAY61046.1| ribosome recycling factor frr (ribosome releasing factor) [Mycobacterium tuberculosis C] gi|134151036|gb|EBA43081.1| ribosome recycling factor frr (ribosome releasing factor) [Mycobacterium tuberculosis str. Haarlem] gi|148506878|gb|ABQ74687.1| ribosome releasing factor [Mycobacterium tuberculosis H37Ra] gi|148722598|gb|ABR07223.1| ribosome recycling factor frr (ribosome releasing factor) [Mycobacterium tuberculosis F11] gi|253319533|gb|ACT24136.1| ribosome recycling factor frr [Mycobacterium tuberculosis KZN 1435] gi|289417356|gb|EFD14596.1| ribosome recycling factor [Mycobacterium tuberculosis T46] gi|289421506|gb|EFD18707.1| ribosome recycling factor frr [Mycobacterium tuberculosis CPHL_A] gi|289437961|gb|EFD20454.1| ribosome recycling factor frr [Mycobacterium tuberculosis KZN 605] gi|289540018|gb|EFD44596.1| ribosome recycling factor frr [Mycobacterium tuberculosis K85] gi|289544826|gb|EFD48474.1| ribosome recycling factor frr [Mycobacterium tuberculosis T17] gi|289687209|gb|EFD54697.1| ribosome recycling factor frr [Mycobacterium tuberculosis 02_1987] gi|289692134|gb|EFD59563.1| ribosome recycling factor frr [Mycobacterium tuberculosis T92] gi|289695581|gb|EFD63010.1| ribosome recycling factor frr [Mycobacterium tuberculosis EAS054] gi|289710565|gb|EFD74581.1| ribosome recycling factor frr (ribosome releasing factor) [Mycobacterium tuberculosis GM 1503] gi|289714567|gb|EFD78579.1| ribosome releasing factor [Mycobacterium tuberculosis T85] gi|298496145|gb|EFI31439.1| ribosome recycling factor frr (ribosome releasing factor) [Mycobacterium tuberculosis 94_M4241A] gi|308214453|gb|EFO73852.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu001] gi|308326125|gb|EFP14976.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu002] gi|308329628|gb|EFP18479.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu003] gi|308333767|gb|EFP22618.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu004] gi|308337161|gb|EFP26012.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu005] gi|308340971|gb|EFP29822.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu006] gi|308344804|gb|EFP33655.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu007] gi|308348752|gb|EFP37603.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu008] gi|308353453|gb|EFP42304.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu009] gi|308357318|gb|EFP46169.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu010] gi|308361203|gb|EFP50054.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu011] gi|308364898|gb|EFP53749.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu012] gi|323718492|gb|EGB27663.1| ribosome recycling factor frr [Mycobacterium tuberculosis CDC1551A] gi|326904497|gb|EGE51430.1| ribosome recycling factor frr [Mycobacterium tuberculosis W-148] gi|328457804|gb|AEB03227.1| ribosome recycling factor frr [Mycobacterium tuberculosis KZN 4207] Length = 185 Score = 231 bits (591), Expect = 3e-59, Method: Composition-based stats. Identities = 65/180 (36%), Positives = 110/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++M ++ + D+ T+RTGR +P M + ++ YG+ P+ Q+A++ V E R++ Sbjct: 6 LFDAEEKMEKAVAVARDDLSTIRTGRANPGMFSRITIDYYGAATPITQLASINVPEARLV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ ++ + ++E I S+LG+NP +G ++R+ VP+ TEERR LVK A E++K Sbjct: 66 VIKPYEANQLRAIETAIRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +SVRNIRR M+ L + RK G+A ED V E D+ K T + ID + K+ E++ Sbjct: 126 VSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDKTTHQYVTQIDELVKHKEGELLEV 185 >gi|87123906|ref|ZP_01079756.1| ribosome recycling factor protein Rrf [Synechococcus sp. RS9917] gi|86168475|gb|EAQ69732.1| ribosome recycling factor protein Rrf [Synechococcus sp. RS9917] Length = 182 Score = 231 bits (591), Expect = 3e-59, Method: Composition-based stats. Identities = 63/179 (35%), Positives = 108/179 (60%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +++ M ++ ++ T+RTGR + S+LD + VE YG+ PL +A ++ + + + Sbjct: 4 NDLETSMQKSVESTQRMFNTIRTGRANSSLLDRISVEYYGADTPLKSLATLSTPDSQTIQ 63 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +D +A++E+ I S LG P +G+V+RI VP TEERR K+A YAE+ K+ Sbjct: 64 IQPFDLSALAAIEKAIAMSELGFTPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGKV 123 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD +D +KK K G+ SED ++ +QK+TD I I++ +K+ +I+ Sbjct: 124 ALRNIRRDAIDKVKKQEKEGEISEDQSRDEQDKVQKLTDRFIAAIETHLADKEADILKV 182 >gi|305681279|ref|ZP_07404086.1| ribosome recycling factor [Corynebacterium matruchotii ATCC 14266] gi|305659484|gb|EFM48984.1| ribosome recycling factor [Corynebacterium matruchotii ATCC 14266] Length = 185 Score = 231 bits (591), Expect = 3e-59, Method: Composition-based stats. Identities = 69/180 (38%), Positives = 113/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++ M T+ ++++ T+RTGR +P+M + V + YG P+ Q+A V+V E RM+ Sbjct: 6 LLECEEHMSTTVDRTREELTTIRTGRANPAMFNGVVADYYGVPTPITQMATVSVPEARMM 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ ++ M+ +E I S+LG+NP +GQVLR+ +P+ TEERR +VK+A + E K Sbjct: 66 LIKPYEMSMMGVIENAIRNSDLGVNPTNDGQVLRVTIPQLTEERRRDMVKLAKSKGEDGK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RN+RR GMD LKK K G A ED V + E ++ K+T + +D ++K+ E+M Sbjct: 126 IAIRNVRRKGMDQLKKIHKDGDAGEDEVQAAEKELDKVTQKYVAAVDEVVQKKEAELMEV 185 >gi|148238974|ref|YP_001224361.1| ribosome recycling factor [Synechococcus sp. WH 7803] gi|166231523|sp|A5GJE9|RRF_SYNPW RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|147847513|emb|CAK23064.1| Ribosome recycling factor [Synechococcus sp. WH 7803] Length = 182 Score = 231 bits (591), Expect = 3e-59, Method: Composition-based stats. Identities = 60/179 (33%), Positives = 104/179 (58%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +++ M ++ +++ T+RTGR + S+LD + VE YG+ PL +A ++ + + + Sbjct: 4 SDLESSMRKSVEATQRNFNTIRTGRANSSLLDRISVEYYGAETPLKSLATLSTPDSQTIQ 63 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +D +A +E+ I S LG P +G+V+RI VP TEERR K+A YAE+ K+ Sbjct: 64 IQPFDISALALIEKAIAMSELGFTPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGKV 123 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD +D +KK K G+ SED ++ +QK D I ++ K+ +I+ Sbjct: 124 ALRNLRRDAIDKIKKQEKEGEFSEDQSRDAQDSVQKTLDKFIAEVEQHLATKEADILKV 182 >gi|15837653|ref|NP_298341.1| ribosome recycling factor [Xylella fastidiosa 9a5c] gi|22001954|sp|Q9PEH7|RRF_XYLFA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|9105995|gb|AAF83861.1|AE003942_5 ribosome recycling factor [Xylella fastidiosa 9a5c] Length = 185 Score = 231 bits (591), Expect = 3e-59, Method: Composition-based stats. Identities = 82/179 (45%), Positives = 122/179 (68%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ +DRM +I L+ + ++RTGR SPS+LD +K++AYG+ PLNQVA+++V E R LV Sbjct: 7 QDAQDRMTKSIDALRNSLASVRTGRASPSLLDGIKIKAYGTDTPLNQVASISVSEGRSLV 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DK M VE+ I+ S+LGL P V G ++R+ +P TEERR L KV H+ E +K+ Sbjct: 67 ITVFDKNMSKDVEKAIYASDLGLTPTVVGTLIRLNLPPLTEERRKELTKVVHSEGEDTKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD +K KS + +ED V E DIQK+TD IK++D + K++E+M Sbjct: 127 AIRNIRRDANQQIKDMLKSKEITEDEVRQGEEDIQKLTDKAIKSVDEVVKSKEQELMTV 185 >gi|38234084|ref|NP_939851.1| ribosome recycling factor [Corynebacterium diphtheriae NCTC 13129] gi|47116991|sp|P61303|RRF_CORDI RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|38200346|emb|CAE50032.1| ribosome recycling factor [Corynebacterium diphtheriae] Length = 185 Score = 231 bits (591), Expect = 3e-59, Method: Composition-based stats. Identities = 66/180 (36%), Positives = 111/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++ M ++ + +++ +RTGR +P+M + V + YG P+ Q+A ++V E RML Sbjct: 6 LFEAEEHMNTSVERTRDELVNIRTGRANPAMFNGVIADYYGVPTPITQMATISVPEARML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ ++ M+ +E I S+LG+NP +GQVLR+ +P+ TEERR + K+A + E K Sbjct: 66 LIKPYEMSMMNEIENAIRNSDLGVNPTNDGQVLRVTIPQLTEERRRDMAKLAKSKGEDGK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RN+RR GMD LKK +K G A ED V + E ++ K+T + +D +K+ E+M Sbjct: 126 IAIRNVRRKGMDQLKKIQKDGDAGEDEVQAAEKELDKVTAKYVAQVDEVVAKKEAELMEV 185 >gi|332967732|gb|EGK06839.1| ribosome recycling factor [Kingella kingae ATCC 23330] Length = 185 Score = 231 bits (591), Expect = 3e-59, Method: Composition-based stats. Identities = 71/179 (39%), Positives = 112/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + +++M ++ L ++ +RTGR +LD V VE +GS VP++QVANVT+L+ R + Sbjct: 7 KTAENKMQRSLEVLGDNLSKVRTGRAHTGLLDQVSVEYWGSEVPISQVANVTLLDARTIG 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V ++ M + +E+ I +SNLGLNP G ++R+P+P TEERR L+KV AE ++ Sbjct: 67 VKPFESNMASKIEKAIRDSNLGLNPAAVGDLIRVPMPMLTEERRKDLIKVVRGEAEDGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RN+RRD DH+KK K + SED E +QK+TD I ++D K++++M Sbjct: 127 SIRNVRRDANDHIKKLLKDKEISEDEARRGEEAVQKLTDKYIADVDKMLAAKEEDLMAI 185 >gi|306829302|ref|ZP_07462492.1| ribosome recycling factor [Streptococcus mitis ATCC 6249] gi|315612956|ref|ZP_07887867.1| ribosome recycling factor [Streptococcus sanguinis ATCC 49296] gi|322374516|ref|ZP_08049030.1| ribosome recycling factor [Streptococcus sp. C300] gi|331266588|ref|YP_004326218.1| ribosome recycling factor [Streptococcus oralis Uo5] gi|304428388|gb|EFM31478.1| ribosome recycling factor [Streptococcus mitis ATCC 6249] gi|315315066|gb|EFU63107.1| ribosome recycling factor [Streptococcus sanguinis ATCC 49296] gi|321280016|gb|EFX57055.1| ribosome recycling factor [Streptococcus sp. C300] gi|326683260|emb|CBZ00878.1| ribosome recycling factor [Streptococcus oralis Uo5] Length = 185 Score = 231 bits (591), Expect = 3e-59, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 114/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+RM + L ++ +R GR + S+LD + VE YG PLNQ+A++T+ E R+L Sbjct: 6 VEKAKERMTQSHQSLAREFGGIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + +ER ++ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD MD KK K+ + +ED + +LE DIQK+TD +K+ID K+KEI+ Sbjct: 126 VAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKEILEV 185 >gi|221124412|ref|XP_002163993.1| PREDICTED: hypothetical protein [Hydra magnipapillata] gi|260220938|emb|CBA29007.1| Ribosome-recycling factor [Curvibacter putative symbiont of Hydra magnipapillata] Length = 186 Score = 231 bits (591), Expect = 3e-59, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + + +M +I+ LK ++ +RTGR +P++LD V V+ YGS VPL+QVAN+++++ R + Sbjct: 8 KTLDAKMDQSIASLKNNLTKIRTGRANPALLDTVHVDYYGSMVPLSQVANLSLIDARTIS 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K M +E+ I +S+LGLNP G+++R+P+P TEERR L KV E +K+ Sbjct: 68 VQPWEKNMAPKIEKAIRDSDLGLNPSSMGELIRVPMPAMTEERRKELTKVVRGEGEGAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD + +K+ K ASED E D+QK TD I ID K+++IM Sbjct: 128 AVRNLRRDANEAVKRLVKDKLASEDDQKRCEADVQKTTDKHITEIDRLVASKEQDIMAV 186 >gi|124022470|ref|YP_001016777.1| ribosome recycling factor [Prochlorococcus marinus str. MIT 9303] gi|123962756|gb|ABM77512.1| Ribosome recycling factor [Prochlorococcus marinus str. MIT 9303] Length = 173 Score = 231 bits (591), Expect = 3e-59, Method: Composition-based stats. Identities = 63/173 (36%), Positives = 107/173 (61%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M ++ +++ T+RTGR +PS+LD + VE YG+ PL +A ++ + + + + +D Sbjct: 1 MHKSVEATQRNFATIRTGRANPSLLDRINVEYYGTETPLKSLATISTPDSQTIAIQPFDN 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 + +E+ I S+LGL P +G+++RI VP TEERR K+A YAE+ K+++RNIR Sbjct: 61 GSMGLIEKAIATSDLGLTPNNDGKIIRINVPPLTEERRKEFCKLAAKYAEEGKVALRNIR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RD +D +KK K + S+D ++ IQK+TD+ I I+ + EK+ +I+ Sbjct: 121 RDAIDKVKKLEKDAELSKDQSHDEQDGIQKLTDTFITEIEKYLAEKEADILKV 173 >gi|15674582|ref|NP_268756.1| ribosome recycling factor [Streptococcus pyogenes M1 GAS] gi|21909863|ref|NP_664131.1| ribosome recycling factor [Streptococcus pyogenes MGAS315] gi|28896442|ref|NP_802792.1| ribosome recycling factor [Streptococcus pyogenes SSI-1] gi|50913751|ref|YP_059723.1| ribosome recycling factor [Streptococcus pyogenes MGAS10394] gi|71910193|ref|YP_281743.1| ribosome recycling factor [Streptococcus pyogenes MGAS5005] gi|94988011|ref|YP_596112.1| ribosome recycling factor [Streptococcus pyogenes MGAS9429] gi|94989890|ref|YP_597990.1| ribosome recycling factor [Streptococcus pyogenes MGAS10270] gi|94991895|ref|YP_599994.1| ribosome recycling factor [Streptococcus pyogenes MGAS2096] gi|94993775|ref|YP_601873.1| ribosome recycling factor [Streptococcus pyogenes MGAS10750] gi|139474297|ref|YP_001129013.1| ribosome recycling factor [Streptococcus pyogenes str. Manfredo] gi|209558949|ref|YP_002285421.1| ribosome recycling factor [Streptococcus pyogenes NZ131] gi|306827884|ref|ZP_07461152.1| ribosome recycling factor [Streptococcus pyogenes ATCC 10782] gi|57014111|sp|P68903|RRF_STRP1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|57014112|sp|P68904|RRF_STRP3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|57014114|sp|Q5XDH3|RRF_STRP6 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166231514|sp|Q1JD58|RRF_STRPB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166231515|sp|Q1JN31|RRF_STRPC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166231516|sp|Q1JI77|RRF_STRPD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166231517|sp|Q1J832|RRF_STRPF RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166231518|sp|A2RG30|RRF_STRPG RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226749943|sp|B5XK64|RRF_STRPZ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|13621691|gb|AAK33477.1| putative ribosome recycling factor [Streptococcus pyogenes M1 GAS] gi|21904050|gb|AAM78934.1| putative ribosome recycling factor [Streptococcus pyogenes MGAS315] gi|28811693|dbj|BAC64625.1| putative ribosome recycling factor [Streptococcus pyogenes SSI-1] gi|50902825|gb|AAT86540.1| Ribosome Recycling Factor [Streptococcus pyogenes MGAS10394] gi|71852975|gb|AAZ50998.1| ribosome recycling factor [Streptococcus pyogenes MGAS5005] gi|94541519|gb|ABF31568.1| ribosome recycling factor (RRF) [Streptococcus pyogenes MGAS9429] gi|94543398|gb|ABF33446.1| Ribosome Recycling Factor (RRF) [Streptococcus pyogenes MGAS10270] gi|94545403|gb|ABF35450.1| Ribosome Recycling Factor (RRF) [Streptococcus pyogenes MGAS2096] gi|94547283|gb|ABF37329.1| Ribosome Recycling Factor (RRF) [Streptococcus pyogenes MGAS10750] gi|134272544|emb|CAM30809.1| ribosome recycling factor [Streptococcus pyogenes str. Manfredo] gi|209540150|gb|ACI60726.1| Ribosome recycling factor [Streptococcus pyogenes NZ131] gi|304429932|gb|EFM32973.1| ribosome recycling factor [Streptococcus pyogenes ATCC 10782] Length = 185 Score = 231 bits (591), Expect = 3e-59, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 115/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+R + L ++ ++R GR + S+LD ++V+ YG+ PLNQ+A++TV E R+L Sbjct: 6 IETAKERFAQSHQSLSREYASIRAGRANASLLDRIQVDYYGAPTPLNQLASITVPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +DK + +ER ++ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LISPFDKSSIKDIERALNASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIRRD MD KK K+ + +ED + +LE DIQK TD IK ID EK+KE++ Sbjct: 126 IAIRNIRRDAMDDAKKQEKAKEITEDELKTLEKDIQKATDDAIKEIDRMTAEKEKELLSV 185 >gi|288905833|ref|YP_003431055.1| ribosome recycling factor [Streptococcus gallolyticus UCN34] gi|306831922|ref|ZP_07465077.1| ribosome recycling factor [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|306834034|ref|ZP_07467155.1| ribosome recycling factor [Streptococcus bovis ATCC 700338] gi|325978868|ref|YP_004288584.1| ribosome-recycling factor [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288732559|emb|CBI14131.1| ribosome recycling factor [Streptococcus gallolyticus UCN34] gi|304423822|gb|EFM26967.1| ribosome recycling factor [Streptococcus bovis ATCC 700338] gi|304425848|gb|EFM28965.1| ribosome recycling factor [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178796|emb|CBZ48840.1| Ribosome-recycling factor [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 185 Score = 231 bits (591), Expect = 3e-59, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 115/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+R + S L ++ +R GR + S+LD ++VE YG+ PLNQ+A++TV E R+L Sbjct: 6 IEKAKERFEQSHSSLAREFAAIRAGRANASLLDRIQVEYYGAMTPLNQLASITVPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +DK + +E I+ S+LG+NP +G V+R+ +P TEE R L K E +K Sbjct: 66 LISPFDKSSLKDIEHAINASDLGINPANDGSVIRLVIPALTEETRKELAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD MD KK K+ + +ED + LE DIQK TD +K+ID+ K+KE++ Sbjct: 126 VAIRNIRRDAMDEAKKQEKAKEITEDELKVLEKDIQKATDEAVKHIDAMTANKEKELLEV 185 >gi|167770609|ref|ZP_02442662.1| hypothetical protein ANACOL_01955 [Anaerotruncus colihominis DSM 17241] gi|167667204|gb|EDS11334.1| hypothetical protein ANACOL_01955 [Anaerotruncus colihominis DSM 17241] Length = 184 Score = 231 bits (591), Expect = 3e-59, Method: Composition-based stats. Identities = 69/186 (37%), Positives = 111/186 (59%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 MN+ L++ ++M TI L+ + +R GR +P++LD + V+ YG+ + +A ++V Sbjct: 1 MNER--LKHYNEKMEKTIRVLENEYSAIRAGRANPAVLDKITVDYYGTPTQIQAMAAISV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R+LV+ WDK + +E+ I S++G+NP +G V+RI P TEERR + K Sbjct: 59 SEARILVIQPWDKSTLRPIEKAIQASDIGINPTNDGTVIRIVFPPLTEERRKEICKQIKK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E SK+++R+IRRD + K +KS + SED LE+ +QK+TD K ID +K+ Sbjct: 119 QGEDSKVAIRSIRRDANEKFKALKKSSEVSEDEEKDLEDQMQKMTDKFCKRIDEIAAKKE 178 Query: 181 KEIMHF 186 KEI+ Sbjct: 179 KEILEI 184 >gi|251781912|ref|YP_002996214.1| ribosome recycling factor [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390541|dbj|BAH81000.1| ribosome releasing factor [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323126728|gb|ADX24025.1| ribosome recycling factor [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 185 Score = 231 bits (591), Expect = 3e-59, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 115/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+R + L ++ ++R GR + S+LD ++V+ YG+ PLNQ+A++TV E R+L Sbjct: 6 IETAKERFAQSHHSLSREYASIRAGRANASLLDRIQVDYYGAPTPLNQLASITVPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +DK + +ER ++ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LISPFDKSSIKDIERALNASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIRRD MD KK K+ + +ED + +LE DIQK TD IK ID EK+KE++ Sbjct: 126 IAIRNIRRDAMDDAKKQEKAKEITEDELKTLEKDIQKATDDAIKEIDRMTAEKEKELLSV 185 >gi|152980540|ref|YP_001353745.1| ribosome recycling factor [Janthinobacterium sp. Marseille] gi|166230794|sp|A6SZP8|RRF_JANMA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|151280617|gb|ABR89027.1| ribosome recycling factor [Janthinobacterium sp. Marseille] Length = 186 Score = 231 bits (591), Expect = 3e-59, Method: Composition-based stats. Identities = 78/179 (43%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + +M +I LK D+ +RTGR +LD V VE YG+ L+QVANVT+++ R + Sbjct: 8 KTADQKMQKSIETLKADLAKVRTGRAHTGILDHVMVEYYGNPTNLSQVANVTLIDARTIG 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V ++K+MVA VE+ I E++LGLNP +G+++R+P P TEERR +VK+ + AE +KI Sbjct: 68 VQPFEKKMVAVVEKAIREADLGLNPATQGELIRVPTPPLTEERRKEMVKLVKSEAEDAKI 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD + LKK K SED +++IQK+TD + ID EK+KE++ Sbjct: 128 AVRNIRRDANESLKKLVKEKACSEDEERRAQDEIQKLTDKFVIEIDKLVVEKEKEVLTV 186 >gi|159901469|ref|YP_001547716.1| ribosome recycling factor [Herpetosiphon aurantiacus ATCC 23779] gi|159894508|gb|ABX07588.1| ribosome recycling factor [Herpetosiphon aurantiacus ATCC 23779] Length = 192 Score = 231 bits (591), Expect = 3e-59, Method: Composition-based stats. Identities = 64/180 (35%), Positives = 114/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ + +M +I L+ + +RTGR SP++++ +KVE YGS +PLNQ+AN+ E RM+ Sbjct: 13 LRDAESKMKKSIDSLRHTLGAVRTGRASPALVEDLKVEYYGSEMPLNQLANIATPESRMI 72 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + +D+ + ++E+ I S LG+NP +G+V+R+ +P+ T+ERR LVK A E K Sbjct: 73 TIQPYDQGAIKAIEKAIQNSELGINPSNDGRVIRLAIPQLTQERRKELVKQVKAKVEDGK 132 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RN+RR+ D ++K ++ SED + ++QK+TD K +++ K+ E+M Sbjct: 133 VAIRNVRREAQDAIRKLQQDKAISEDDERRGQEELQKLTDRFQKEVETIGTTKEAEVMEV 192 >gi|239626444|ref|ZP_04669475.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239516590|gb|EEQ56456.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 183 Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats. Identities = 73/181 (40%), Positives = 111/181 (61%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 +L+ +D+M T+ L D T+R GR +P +LD +KV+ YG+ PL QV NV+V E RM Sbjct: 3 ELKIYEDKMNKTLDVLLSDFGTIRAGRANPHVLDKLKVDYYGTPTPLQQVGNVSVPEARM 62 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 +V+ W+K ++ +E+ I S LG+NP +G +R+ PE TE+RR + K E + Sbjct: 63 IVIQPWEKSLLKPIEKAILTSELGINPTNDGNCIRLVFPEMTEDRRKEVSKDVKKKGEGA 122 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 K+++RNIRRD + KK+ K+G SED + +QK+TD ++ +D EEK KEIM Sbjct: 123 KVALRNIRRDANEAFKKAEKAGDMSEDDLKEATEKMQKLTDKMVEKVDKAVEEKTKEIMT 182 Query: 186 F 186 Sbjct: 183 V 183 >gi|306825442|ref|ZP_07458782.1| ribosome recycling factor [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432380|gb|EFM35356.1| ribosome recycling factor [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 185 Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats. Identities = 71/180 (39%), Positives = 114/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+RM + L ++ +R GR + S+LD + VE YG PLNQ+A++T+ E R+L Sbjct: 6 VEKAKERMTQSHQSLAREFGGIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + +ER ++ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD MD KK K+ + +ED + +LE DIQK+TD +K+ID K+KE++ Sbjct: 126 VAIRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELLEV 185 >gi|291533215|emb|CBL06328.1| ribosome recycling factor [Megamonas hypermegale ART12/1] Length = 185 Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats. Identities = 84/180 (46%), Positives = 119/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + ++RM T+S K + +LR GR +P++LD V VE YGS VP+NQV N++V EPRM+ Sbjct: 6 IAKNEERMKKTLSAAKSEFASLRAGRATPALLDKVMVEYYGSLVPVNQVGNISVPEPRMI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ W+K M+ +E+ I S+LGL+P +G V+R+ +P+ TEERR LVK + AE+SK Sbjct: 66 LIQPWEKPMLHEIEKAITRSDLGLSPNNDGTVIRLNIPQLTEERRTDLVKTLNKRAEESK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +SVRNIRRD + +KK K+ +ED + DIQKI D IK ID EK+KEIM Sbjct: 126 VSVRNIRRDANEAIKKLEKAKSITEDDAKKAQEDIQKIVDKYIKEIDIARAEKEKEIMEV 185 >gi|269468297|gb|EEZ79979.1| ribosome recycling factor [uncultured SUP05 cluster bacterium] Length = 185 Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats. Identities = 77/186 (41%), Positives = 118/186 (63%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ Q+ +RM TI L+ +R GR PS+L+ + V+ YGS VP++QVAN++ Sbjct: 2 LNEI--QQDAGERMNKTIDSLENAFSKIRAGRAHPSLLEQIHVDYYGSMVPISQVANISA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R L V+ W+K+MVA +E+ I S+LGLNP GQV+RIP+P TEERR LV+V Sbjct: 60 EDSRTLKVTPWEKDMVAVIEKAIMTSDLGLNPQTMGQVMRIPLPPLTEERRRELVRVVKD 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE++K+++RNIRRD K+ K + SED E++IQKITD +K+++ K+ Sbjct: 120 EAEQAKVAIRNIRRDANSDFKELLKEKEVSEDEARKAEDNIQKITDDHVKSVEDKLTHKE 179 Query: 181 KEIMHF 186 ++ Sbjct: 180 DSLLEI 185 >gi|329117138|ref|ZP_08245855.1| ribosome recycling factor [Streptococcus parauberis NCFD 2020] gi|326907543|gb|EGE54457.1| ribosome recycling factor [Streptococcus parauberis NCFD 2020] Length = 185 Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats. Identities = 74/180 (41%), Positives = 114/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +R + L ++ ++R GR + S+LD ++VE YG+ PLNQ+A++TV E R+L Sbjct: 6 IEKANERFQQSHQSLSREYASIRAGRANASLLDRIQVEYYGAPTPLNQLASITVPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +DK + +ER I+ S+LG+ P +G ++R+ +P TEE R L K E SK Sbjct: 66 MISPFDKSSIKDIERAINASDLGITPANDGSIIRLVIPALTEETRKELAKEVKKVGESSK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIRRD MD KK K+ + +ED + SLE DIQK TD IK+ID K+KE++ Sbjct: 126 IAIRNIRRDAMDDAKKQEKAKEITEDELKSLEKDIQKATDDAIKHIDQMTANKEKELLEV 185 >gi|290957080|ref|YP_003488262.1| ribosome recycling factor [Streptomyces scabiei 87.22] gi|260646606|emb|CBG69703.1| ribosome recycling factor [Streptomyces scabiei 87.22] Length = 186 Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats. Identities = 63/180 (35%), Positives = 105/180 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K D +RTGR P+M + + + YG+ P+NQ+A+ +V EPRM Sbjct: 7 LLEAEEKMEKAVVVAKDDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMA 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV+ +DK + ++E+ I +S+LG+NP +G ++R+ PE TEERR +KVA + AE SK Sbjct: 67 VVTPFDKTALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEERRRDYIKVARSKAEDSK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+R +RR D + K K G+ ED E ++ T + +D + K+ E++ Sbjct: 127 VSIRAVRRKAKDAIDKLVKDGEVGEDEGRRAEKELDDTTAKYVAQVDELLKHKEAELLEV 186 >gi|218133702|ref|ZP_03462506.1| hypothetical protein BACPEC_01571 [Bacteroides pectinophilus ATCC 43243] gi|217991077|gb|EEC57083.1| hypothetical protein BACPEC_01571 [Bacteroides pectinophilus ATCC 43243] Length = 183 Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats. Identities = 70/181 (38%), Positives = 111/181 (61%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 D+ +D+M ++ L +D T+R GR +P +LD ++V+ Y + PL QVAN++V E R+ Sbjct: 3 DIAIYEDKMKKSVEALLEDYKTIRAGRANPHILDKIRVDYYNTPTPLQQVANISVPEARI 62 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 + + WD ++ +E+ I S+LGL P +G+V+R+ PE TE+RR L K E + Sbjct: 63 IQIQPWDASLIKEIEKAIIVSDLGLTPNNDGKVIRLVFPELTEDRRKELSKDVKKKGENA 122 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 K+++RN+RRD D KK K+ + SED + E+ IQKITD I +D ++K KE+M Sbjct: 123 KVAIRNVRRDANDVFKKQNKANEISEDELKDAEDSIQKITDKYITEVDKCVDDKIKEVMT 182 Query: 186 F 186 Sbjct: 183 V 183 >gi|71275615|ref|ZP_00651900.1| Ribosome recycling factor [Xylella fastidiosa Dixon] gi|71899512|ref|ZP_00681669.1| Ribosome recycling factor [Xylella fastidiosa Ann-1] gi|170729576|ref|YP_001775009.1| ribosome recycling factor [Xylella fastidiosa M12] gi|182680889|ref|YP_001829049.1| ribosome recycling factor [Xylella fastidiosa M23] gi|71163506|gb|EAO13223.1| Ribosome recycling factor [Xylella fastidiosa Dixon] gi|71730732|gb|EAO32806.1| Ribosome recycling factor [Xylella fastidiosa Ann-1] gi|167964369|gb|ACA11379.1| ribosome recycling factor [Xylella fastidiosa M12] gi|182630999|gb|ACB91775.1| ribosome recycling factor [Xylella fastidiosa M23] Length = 190 Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats. Identities = 82/179 (45%), Positives = 122/179 (68%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ +DRM +I L+ + ++RTGR SPS+LD +K++AYG+ PLNQVA+++V E R LV Sbjct: 12 QDAQDRMTKSIDALRNSLASVRTGRASPSLLDGIKIKAYGTDTPLNQVASISVSEGRSLV 71 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DK M VE+ I+ S+LGL P V G ++R+ +P TEERR L KV H+ E +K+ Sbjct: 72 ITVFDKNMSKDVEKAIYASDLGLTPTVVGTLIRLNLPPLTEERRKELTKVVHSEGEDTKV 131 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD +K KS + +ED V E DIQK+TD IK++D + K++E+M Sbjct: 132 AIRNIRRDANQQIKDMLKSKEITEDEVRHGEEDIQKLTDKAIKSVDEVVKSKEQELMTV 190 >gi|328885353|emb|CCA58592.1| Ribosome recycling factor [Streptomyces venezuelae ATCC 10712] Length = 186 Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats. Identities = 63/180 (35%), Positives = 106/180 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K+D +RTGR P+M + + + YG+ P+NQ+A+ +V EPRM Sbjct: 7 LLEAEEKMEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGAITPINQLASFSVPEPRMA 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV+ +DK + ++E+ I +S+LG+NP +G ++R+ PE TEERR +KVA AE SK Sbjct: 67 VVTPFDKSALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEERRREYIKVAKGKAEDSK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 IS+R++RR + + K K G+ ED E ++ T + +D + K+ E++ Sbjct: 127 ISIRSVRRKAKETIDKFVKDGEVGEDEGRRAEKELDDTTAKYVAQVDELLKHKEAELLEV 186 >gi|148992922|ref|ZP_01822541.1| ribosome recycling factor [Streptococcus pneumoniae SP9-BS68] gi|168490239|ref|ZP_02714438.1| ribosome recycling factor [Streptococcus pneumoniae SP195] gi|147928374|gb|EDK79390.1| ribosome recycling factor [Streptococcus pneumoniae SP9-BS68] gi|183571379|gb|EDT91907.1| ribosome recycling factor [Streptococcus pneumoniae SP195] gi|332073277|gb|EGI83756.1| ribosome recycling factor [Streptococcus pneumoniae GA17570] Length = 185 Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 114/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+RM + L ++ +R GR + S+LD V VE YG PLNQ+A++T+ E R+L Sbjct: 6 IEKAKERMTQSHQSLAREFGGIRAGRANASLLDRVHVEYYGVETPLNQIASITIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + +ER ++ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD MD KK K+ + +ED + +LE DIQK+TD +K+ID K+KE++ Sbjct: 126 VAVRNIRRDAMDEAKKREKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELLEV 185 >gi|254670407|emb|CBA05960.1| Ribosome recycling factor [Neisseria meningitidis alpha153] Length = 208 Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats. Identities = 77/186 (41%), Positives = 117/186 (62%), Gaps = 1/186 (0%) Query: 2 NQVIDLQN-IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 N + D+Q + +M ++ LK+++ +RTGR +LD V+VE +GS VP++QVANVT+ Sbjct: 23 NMINDIQKTAEGKMQRSVEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVANVTL 82 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 L+ R + V ++ M A VE+ I +SNLGLNP G ++R+P+P TEERR L+KV Sbjct: 83 LDARTIGVKPFEGNMAAKVEKAIRDSNLGLNPAAVGDLIRVPMPMLTEERRKDLIKVVRG 142 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE+ ++S+RN+RRD DH+KK K + SED E +QK+TD I D K+ Sbjct: 143 EAEEGRVSIRNVRRDANDHIKKLLKDKEISEDEARRGEEAVQKLTDKYITEADKLLTTKE 202 Query: 181 KEIMHF 186 +++M Sbjct: 203 EDLMAI 208 >gi|285018794|ref|YP_003376505.1| ribosome recycling factor (rrf) protein [Xanthomonas albilineans GPE PC73] gi|283474012|emb|CBA16513.1| probable ribosome recycling factor (rrf) protein [Xanthomonas albilineans] Length = 185 Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 116/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ + RM +I L+ ++ +RTGR S ++++ +KV YGS +PL+QVA+V V + R L Sbjct: 7 QDAQTRMAKSIDALRHTLIKVRTGRASTALVEHLKVNYYGSEMPLSQVASVAVADARSLT 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++ W+K+MV++VE+ I S+LGL P G +R+ +P TEERR L KV H E +K+ Sbjct: 67 ITPWEKQMVSAVEKAILASDLGLTPNTAGTTIRLNLPALTEERRRELSKVVHGEGEDTKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD H+K K K +ED E+DIQK+TD IK++D + K++E+M Sbjct: 127 AIRNIRRDANQHIKDLLKDKKVTEDEARGSEDDIQKLTDKAIKDVDEVVKSKEQELMAV 185 >gi|125625049|ref|YP_001033532.1| Frr protein [Lactococcus lactis subsp. cremoris MG1363] gi|166230795|sp|A2RNG1|RRF_LACLM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|124493857|emb|CAL98850.1| Frr protein [Lactococcus lactis subsp. cremoris MG1363] gi|300071855|gb|ADJ61255.1| ribosome recycling factor [Lactococcus lactis subsp. cremoris NZ9000] Length = 185 Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats. Identities = 76/185 (41%), Positives = 125/185 (67%), Gaps = 2/185 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 N+++ ++RM +++ L++D+ LR GR + S+LD V+V YG+ PLNQ+A++T+ Sbjct: 3 NEIV--TTAQERMKHSLASLQRDLGHLRAGRANASLLDRVQVVYYGAPTPLNQLASITIP 60 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 E R+L+V+ +DK ++ +E+ ++ES+LG+ P +G V+R+ +P TEERR LVK Y Sbjct: 61 EARVLMVTPFDKSILKDIEKALYESDLGITPANDGSVIRLVIPMLTEERRRELVKEMGKY 120 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 E +K+++RNIRRD MD KKS K+ + +ED + LEN+IQK+TD +K D K+K Sbjct: 121 IESAKVAIRNIRRDAMDTAKKSEKAKEITEDDLKDLENEIQKVTDDAVKEADRLASVKEK 180 Query: 182 EIMHF 186 E++ Sbjct: 181 ELLDI 185 >gi|17228703|ref|NP_485251.1| ribosome recycling factor [Nostoc sp. PCC 7120] gi|22001942|sp|Q8YXK4|RRF_ANASP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|17130555|dbj|BAB73165.1| ribosome recycling factor [Nostoc sp. PCC 7120] Length = 182 Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats. Identities = 64/177 (36%), Positives = 108/177 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +M T+ ++ T+RTGR + S+LD V V+ YGS PL +AN++ + + Sbjct: 3 LAEAESKMQHTVEATQRAFNTIRTGRANASLLDKVLVDYYGSPTPLKSLANISTPDATTI 62 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +DK + VE+ I S++GL P +G V+R+ +P T +RR LVK+A YAE+ + Sbjct: 63 LIQPYDKSSLNIVEKAISLSDVGLTPSNDGAVIRLNIPPLTSDRRKELVKIAAKYAEEGR 122 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +++RNIRRD +D ++K K+ + SED ++ +QK+T+ ID EK+K+I Sbjct: 123 VAIRNIRRDAVDSIRKLEKNAEVSEDEAKDQQDKLQKLTNKYTARIDELLVEKEKDI 179 >gi|269217144|ref|ZP_06160998.1| ribosome recycling factor [Slackia exigua ATCC 700122] gi|269129281|gb|EEZ60366.1| ribosome recycling factor [Slackia exigua ATCC 700122] Length = 186 Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats. Identities = 71/186 (38%), Positives = 110/186 (59%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 MN+ + ++ M +S LK+ +RTGR + +LD VKV+ YG P+NQ+A V V Sbjct: 1 MNEEEIMLEAEEGMEKALSNLKEAFAGVRTGRANAMVLDKVKVDYYGVPTPVNQMAAVKV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + ML + WDK MV ++E I S+LG+ P +G V+R+P P+ TEERR L K Sbjct: 61 PDAHMLTIEPWDKSMVRAIEAAILASDLGITPSNDGSVIRLPFPQLTEERRRDLAKQCKT 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 ++E+ +++VR R ++K +K+ + SED E IQK+TDS IK +D F++K+ Sbjct: 121 FSEEGRVAVRKARGAANAAVEKLKKASEISEDDARRDEESIQKLTDSYIKKVDEMFKKKE 180 Query: 181 KEIMHF 186 E+M Sbjct: 181 AELMAI 186 >gi|254467840|ref|ZP_05081246.1| ribosome recycling factor [beta proteobacterium KB13] gi|207086650|gb|EDZ63933.1| ribosome recycling factor [beta proteobacterium KB13] Length = 180 Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats. Identities = 76/180 (42%), Positives = 113/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +K +M TI LK D +RTGR +LD + V+ YG+ PL+Q+ANVT+ + + Sbjct: 1 MEELKIKMEKTIERLKNDFSKIRTGRAHTGLLDHLSVDYYGTITPLSQMANVTLGDNVTI 60 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V +DK +++E+ I +S+LGLNP V G ++R+P+P TEERR L+KV + E +K Sbjct: 61 NVQPYDKTQTSAIEKVIRDSDLGLNPAVNGDLIRVPMPPLTEERRKDLIKVVKSEGENAK 120 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 IS+RNIRRDG D LKK K SED + IQ +TD IK+ID+ K+K+++ Sbjct: 121 ISIRNIRRDGNDELKKQLKEKLISEDDEKRDQAKIQTLTDEFIKSIDNLITSKEKDLLEI 180 >gi|19745589|ref|NP_606725.1| ribosome recycling factor [Streptococcus pyogenes MGAS8232] gi|24418654|sp|Q8P274|RRF_STRP8 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|19747714|gb|AAL97224.1| putative ribosome recycling factor [Streptococcus pyogenes MGAS8232] Length = 185 Score = 231 bits (590), Expect = 4e-59, Method: Composition-based stats. Identities = 73/178 (41%), Positives = 115/178 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+R + L ++ ++R GR + S+LD ++V+ YG+ PLNQ+A++TV E R+L Sbjct: 6 IETAKERFAQSHQSLSREYASIRAGRANASLLDRIQVDYYGAPTPLNQLASITVPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +DK + +ER ++ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LISPFDKSSIKDIERALNASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 I++RNIRRD MD KK K+ + +ED + +LE DIQK TD IK ID EK+KE++ Sbjct: 126 IAIRNIRRDAMDDAKKQEKAKEITEDELKTLEKDIQKATDDAIKEIDRMTAEKEKELL 183 >gi|300866975|ref|ZP_07111646.1| Ribosome-recycling factor [Oscillatoria sp. PCC 6506] gi|300335010|emb|CBN56812.1| Ribosome-recycling factor [Oscillatoria sp. PCC 6506] Length = 182 Score = 231 bits (590), Expect = 4e-59, Method: Composition-based stats. Identities = 61/177 (34%), Positives = 109/177 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +D M + ++ T+RTGR + S+LD V V+ YGS P+ +A+++ + + Sbjct: 3 LAEAEDHMQKAVESTQRSFNTIRTGRANASLLDRVMVDYYGSPTPIKSLASISTPDASTI 62 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + +D++ + +E+ I S++GL P +G V+R+ +P T +RRL LVK+A ++E+ K Sbjct: 63 NIQPFDRKTINLIEKAISLSDVGLTPSNDGSVIRLNIPPLTTDRRLELVKLAAKFSEEGK 122 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +S+RNIRRD ++ ++K KS + S+D L++ +QK+TD I I+ K+K+I Sbjct: 123 VSIRNIRRDAVESIRKQEKSSELSKDEARDLQDKMQKLTDKYIAKIEEVLAAKEKDI 179 >gi|300933102|ref|ZP_07148358.1| ribosome recycling factor [Corynebacterium resistens DSM 45100] Length = 185 Score = 231 bits (590), Expect = 4e-59, Method: Composition-based stats. Identities = 74/180 (41%), Positives = 120/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++RM ++ ++++ T+RTGR +P+M + + E YG P+ Q+A ++V EPRML Sbjct: 6 LLESEERMTSSVEHAREELTTIRTGRANPAMFNGIIAEYYGVPTPITQMATISVPEPRML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ ++ + +E I S+LG+NP +GQVLR+ VP+ TEERR LVKVA + E +K Sbjct: 66 IIKPYEASTMQDIENAIRNSDLGVNPTNDGQVLRVTVPQLTEERRRDLVKVAKSKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIRR GM+ L K +K G+A ED V + E D++K+T + ++ +D+ E K+KE+M Sbjct: 126 IAIRNIRRKGMEGLGKIQKDGEAGEDEVKAAEKDLEKVTQNHVEQVDALVENKEKELMEV 185 >gi|297538506|ref|YP_003674275.1| ribosome recycling factor [Methylotenera sp. 301] gi|297257853|gb|ADI29698.1| ribosome recycling factor [Methylotenera sp. 301] Length = 185 Score = 231 bits (590), Expect = 4e-59, Method: Composition-based stats. Identities = 73/177 (41%), Positives = 106/177 (59%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 + +M + LK D+ +RTGR +LD V VE YGS V +NQVANV + + R + V Sbjct: 9 VDQKMQRALEALKTDLAKVRTGRAHTGLLDHVMVEYYGSMVAVNQVANVNLGDSRTIHVQ 68 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 ++K M+ VE+ I + +LGLNP G ++R+P+P TEERR + K+ + AE +K+SV Sbjct: 69 PFEKSMIGKVEKAIRDCDLGLNPATNGDLIRVPMPMLTEERRRDMTKIVRSEAEGAKVSV 128 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RN RRD D LKK K + SED ++D+QK TD + ID + K+ E+M Sbjct: 129 RNARRDANDTLKKLLKDKEISEDEERRAQDDVQKATDKAVAEIDKMLQVKEVELMAV 185 >gi|225388995|ref|ZP_03758719.1| hypothetical protein CLOSTASPAR_02740 [Clostridium asparagiforme DSM 15981] gi|225044935|gb|EEG55181.1| hypothetical protein CLOSTASPAR_02740 [Clostridium asparagiforme DSM 15981] Length = 183 Score = 231 bits (590), Expect = 4e-59, Method: Composition-based stats. Identities = 74/181 (40%), Positives = 111/181 (61%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 +L+ +D+M T+ L+ + +R GR +P +LD +KV+ YG+ PL QV N++V E RM Sbjct: 3 ELKKYEDKMNKTLDVLEDEFGAIRAGRANPHVLDKIKVDYYGTPTPLQQVGNISVPEARM 62 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 +V+ W+K ++ +E+ I S LG+NP +G +R+ PE TE+RR L K +++ Sbjct: 63 IVIQPWEKSLIKPIEKAILTSELGINPNNDGNAIRLIFPELTEDRRKELAKDVKKKGDQA 122 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 K+++RNIRRD MD KK KSG SED E +QK+TD I+ +D E K KEIM Sbjct: 123 KVAIRNIRRDAMDAFKKMEKSGDMSEDDRDLAEEKMQKLTDKMIEKVDKAVETKTKEIMT 182 Query: 186 F 186 Sbjct: 183 V 183 >gi|328948074|ref|YP_004365411.1| ribosome-recycling factor [Treponema succinifaciens DSM 2489] gi|328448398|gb|AEB14114.1| Ribosome-recycling factor [Treponema succinifaciens DSM 2489] Length = 179 Score = 231 bits (590), Expect = 4e-59, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 122/179 (68%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + + + RM T++ LK++ ++RTGR S ++ D V+V+ YG+ PLNQV N+++ E R + Sbjct: 1 MADNESRMEKTVNSLKEEYKSIRTGRASAAIFDKVRVDYYGTPTPLNQVGNISIPEARTI 60 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+S +DK ++ +E+ I ++ LGLNP +G+V+RI +P T +RR LVK A A AE + Sbjct: 61 VISPFDKSIMGDIEKAIQKAELGLNPNNDGKVIRIAIPPLTADRRKELVKQAKATAENYR 120 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++RNIRRDG + LKK +K+G+ +ED + + +QK+TD I+ I+ +E K+KEIM Sbjct: 121 TTIRNIRRDGNEDLKKQQKAGELTEDQLKTETEKLQKLTDKYIEEINGIYEAKEKEIME 179 >gi|323339424|ref|ZP_08079706.1| ribosome recycling factor [Lactobacillus ruminis ATCC 25644] gi|323093135|gb|EFZ35725.1| ribosome recycling factor [Lactobacillus ruminis ATCC 25644] Length = 240 Score = 231 bits (590), Expect = 4e-59, Method: Composition-based stats. Identities = 78/184 (42%), Positives = 122/184 (66%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M +L +++M + L+ ++ +R G + S+L+ V VE YG+ PLNQ+A ++V Sbjct: 55 MGVSSELVKYQEKMQKAEAALQHELGGIRAGVANASLLNRVMVEYYGAPTPLNQMAQISV 114 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R+L+V+ +DK + VE + S+LGL P+ +G +R+ +P+ TEERR L K A Sbjct: 115 PEARVLLVTPYDKSSLKDVEHALLASDLGLTPMNDGSAIRLVIPQLTEERRKELAKQVRA 174 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AEK K++VRN+RR+ MD LKK++K+G SED++ LE++ QKITD++IKNID K+ Sbjct: 175 AAEKGKVAVRNVRREMMDSLKKAQKNGDMSEDVLHDLEDEAQKITDASIKNIDGITAAKE 234 Query: 181 KEIM 184 KEI+ Sbjct: 235 KEIL 238 >gi|153853432|ref|ZP_01994841.1| hypothetical protein DORLON_00830 [Dorea longicatena DSM 13814] gi|149754218|gb|EDM64149.1| hypothetical protein DORLON_00830 [Dorea longicatena DSM 13814] Length = 183 Score = 231 bits (590), Expect = 4e-59, Method: Composition-based stats. Identities = 76/186 (40%), Positives = 119/186 (63%), Gaps = 3/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 MN+ L+ +++M TI L ++ +R GR +P++L+ + V+ YG+ P+ QVANV+V Sbjct: 1 MNER--LKPFEEKMKKTIGNLDGELSAIRAGRANPNVLNKIMVDYYGTPTPIQQVANVSV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E RM+ + W+K+MV +E+ I S+LG+NP +G +R+ PE TE+RR LVK Sbjct: 59 PEARMIQIQPWEKKMVREIEKAIMTSDLGINPTNDGTTVRLLFPELTEDRRKELVKDVKK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E +K+++RNIRRDG+D +KK K SED + +E+D+QK+TD +K +D E K Sbjct: 119 KGEAAKVAIRNIRRDGIDSVKKL-KGSDVSEDEMKDMEDDLQKLTDKYVKEVDKAVEAKS 177 Query: 181 KEIMHF 186 KE+M Sbjct: 178 KEVMTV 183 >gi|161870876|ref|YP_001600050.1| ribosome recycling factor [Neisseria meningitidis 053442] gi|161596429|gb|ABX74089.1| ribosome recycling factor [Neisseria meningitidis 053442] gi|254672753|emb|CBA06770.1| Ribosome recycling factor [Neisseria meningitidis alpha275] gi|308388405|gb|ADO30725.1| ribosome recycling factor [Neisseria meningitidis alpha710] Length = 208 Score = 231 bits (589), Expect = 4e-59, Method: Composition-based stats. Identities = 76/186 (40%), Positives = 116/186 (62%), Gaps = 1/186 (0%) Query: 2 NQVIDLQN-IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 N + D+Q + +M ++ LK+++ +RTGR +LD V+VE +GS VP++QVANVT+ Sbjct: 23 NMINDIQKTAEGKMQRSVEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVANVTL 82 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 L+ R + V ++ M VE+ I +SNLGLNP G ++R+P+P TEERR L+KV Sbjct: 83 LDARTIGVKPFEGNMAVKVEKAIRDSNLGLNPAAVGDLIRVPMPMLTEERRKDLIKVVRG 142 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE+ ++S+RN+RRD DH+KK K + SED E +QK+TD I D K+ Sbjct: 143 EAEEGRVSIRNVRRDANDHIKKLLKDKEISEDEARRGEEAVQKLTDKYITEADKLLTAKE 202 Query: 181 KEIMHF 186 +++M Sbjct: 203 EDLMAI 208 >gi|145224703|ref|YP_001135381.1| ribosome recycling factor [Mycobacterium gilvum PYR-GCK] gi|315445033|ref|YP_004077912.1| ribosome recycling factor [Mycobacterium sp. Spyr1] gi|189044062|sp|A4TC77|RRF_MYCGI RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|145217189|gb|ABP46593.1| ribosome recycling factor [Mycobacterium gilvum PYR-GCK] gi|315263336|gb|ADU00078.1| ribosome recycling factor [Mycobacterium sp. Spyr1] Length = 185 Score = 231 bits (589), Expect = 4e-59, Method: Composition-based stats. Identities = 61/180 (33%), Positives = 108/180 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++M +S + D+ ++RTGR +P M + + ++ YG+ P+ Q++++ V E RM+ Sbjct: 6 LFDAEEKMEKAVSVARDDLASIRTGRANPGMFNRIHIDYYGASTPITQLSSINVPEARMV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ ++ + +E I S+LG+NP +G ++R+ +P+ TEERR LVK A + E +K Sbjct: 66 VIKPYEANQLRPIEDAIRNSDLGVNPTNDGNIIRVSIPQLTEERRRDLVKQAKSKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+RNIRR M+ L + +K G A ED V E D+ K T +D + K+ E++ Sbjct: 126 VSIRNIRRKAMEELARIKKDGDAGEDDVTRAEKDLDKSTHQYTSQVDDLVKHKEGELLEV 185 >gi|227536081|ref|ZP_03966130.1| peptide chain release factor RF4 [Sphingobacterium spiritivorum ATCC 33300] gi|300772051|ref|ZP_07081921.1| ribosome recycling factor [Sphingobacterium spiritivorum ATCC 33861] gi|227243978|gb|EEI93993.1| peptide chain release factor RF4 [Sphingobacterium spiritivorum ATCC 33300] gi|300760354|gb|EFK57180.1| ribosome recycling factor [Sphingobacterium spiritivorum ATCC 33861] Length = 187 Score = 231 bits (589), Expect = 4e-59, Method: Composition-based stats. Identities = 84/188 (44%), Positives = 124/188 (65%), Gaps = 3/188 (1%) Query: 1 MNQVIDLQ--NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 MN++I LQ + KD M +SF + ++ +R G+ SPSMLD + V+ YGS PL QV+NV Sbjct: 1 MNELISLQLDDCKDSMTKAVSFAESELTKIRAGKASPSMLDGISVDYYGSPTPLAQVSNV 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 + R +V+ W+K +++++E+ I +SNLGLNP +G V+R+ VP TEERR LVK A Sbjct: 61 NTTDARTIVIQPWEKSLISAIEKAIIDSNLGLNPQNDGIVIRLVVPALTEERRRDLVKKA 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 AEK +I++RNIR+D + +KK + G ASED + E ++QK+TDS I +D E Sbjct: 121 KEEAEKGRIAIRNIRKDTNESIKKLKNDG-ASEDEIKVGEAEVQKLTDSFIVQVDKLAEL 179 Query: 179 KKKEIMHF 186 K+K+IM Sbjct: 180 KEKDIMTV 187 >gi|197119126|ref|YP_002139553.1| ribosome recycling factor [Geobacter bemidjiensis Bem] gi|226749930|sp|B5EHV8|RRF_GEOBB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|197088486|gb|ACH39757.1| ribosome recycling factor [Geobacter bemidjiensis Bem] Length = 185 Score = 231 bits (589), Expect = 4e-59, Method: Composition-based stats. Identities = 74/180 (41%), Positives = 113/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + ++ M +I L+K+ +RTGR S S+LD +KV++YG+ PLNQVA + + E R + Sbjct: 6 ISSMNVHMDKSIESLRKEYQKVRTGRASTSLLDDIKVDSYGTLSPLNQVATLAIPEARTI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +S WD +M+A +E+ I SNLGLNP +G+++R+ +P TEERR +VK AE +K Sbjct: 66 TISPWDSKMIAPIEKAIMNSNLGLNPANDGKMIRLTLPPLTEERRKDIVKQLKRDAEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD +D LKK K SED E ++Q T+S + +D K+KE+M Sbjct: 126 VALRNIRRDAIDQLKKLEKDKSISEDEQKRAEKEVQDFTNSHVAKVDEVLLHKEKEVMEV 185 >gi|325923975|ref|ZP_08185564.1| ribosome recycling factor [Xanthomonas gardneri ATCC 19865] gi|325545558|gb|EGD16823.1| ribosome recycling factor [Xanthomonas gardneri ATCC 19865] Length = 185 Score = 231 bits (589), Expect = 4e-59, Method: Composition-based stats. Identities = 82/179 (45%), Positives = 118/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ RM +I L+ + T+RTGR SP++LD +KV+AYG+ PLNQVA+++V E R LV Sbjct: 7 QDALTRMTKSIDALRHSLTTVRTGRASPALLDNIKVKAYGTDTPLNQVASISVSEGRSLV 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S++DK M+ VE+ I+ S+LGL P V G V+R+ +P TEERR L K H E SK+ Sbjct: 67 ISLFDKGMIKDVEKAIYASDLGLTPTVVGTVIRLNLPPLTEERRKELSKSVHGEGEDSKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD +K K +ED S E+DIQK+TD IK++D + K++E+M Sbjct: 127 AIRNIRRDANQQVKDLLKDKAVTEDEARSAEDDIQKLTDKAIKDVDEVVKGKEQELMTV 185 >gi|148553387|ref|YP_001260969.1| ribosome recycling factor [Sphingomonas wittichii RW1] gi|166231512|sp|A5V3G5|RRF_SPHWW RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|148498577|gb|ABQ66831.1| ribosome recycling factor [Sphingomonas wittichii RW1] Length = 185 Score = 231 bits (589), Expect = 4e-59, Method: Composition-based stats. Identities = 88/169 (52%), Positives = 117/169 (69%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D +++ RM + LK D+ LRTGR S ++LD V VE YG+H+PLNQ A VT EPR Sbjct: 4 YDKADLERRMHGAVEALKSDLTGLRTGRASVNLLDPVTVEIYGAHMPLNQAATVTAPEPR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 ML V VWD+ V V++ I + LGLNPIV+GQ LRIP+P+ TEERR L K+A YAEK Sbjct: 64 MLSVQVWDRSNVGPVDKAIRSAGLGLNPIVDGQTLRIPIPDLTEERRKELAKLASQYAEK 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNID 173 ++++VRN+RRDGMD LK K G+ ED E ++QK+TD+TI ++D Sbjct: 124 ARVAVRNVRRDGMDSLKTDEKKGEIGEDDRKRRETEVQKLTDATISDVD 172 >gi|160893344|ref|ZP_02074131.1| hypothetical protein CLOL250_00893 [Clostridium sp. L2-50] gi|156865036|gb|EDO58467.1| hypothetical protein CLOL250_00893 [Clostridium sp. L2-50] Length = 181 Score = 231 bits (589), Expect = 4e-59, Method: Composition-based stats. Identities = 70/180 (38%), Positives = 113/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M T+ L+ + T+R GR +P++L+ +KVE YG P+ Q+AN+TV E R L Sbjct: 2 LTQYEEKMTKTVENLEGEYATIRAGRANPNILNKIKVEYYGVPTPMQQLANITVPEARTL 61 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ W+ +V ++E+ I S+LGL P +G+ + + PE TEERR +VK E +K Sbjct: 62 MIAPWEPSLVKAIEKAILNSDLGLTPNNDGKNIILNFPELTEERRKEIVKDIKKKGENAK 121 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RN+RRD D +KK K+G SED + + E+ IQK+TD + ID E+K EI+ Sbjct: 122 VAIRNVRRDANDAIKKMEKAGDISEDELKTNEDKIQKMTDKYVGLIDKAIEKKSTEILTV 181 >gi|301165592|emb|CBW25163.1| ribosome recycling factor [Bacteriovorax marinus SJ] Length = 185 Score = 231 bits (589), Expect = 4e-59, Method: Composition-based stats. Identities = 74/186 (39%), Positives = 108/186 (58%), Gaps = 1/186 (0%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M I L + +M +I LK + +RTGR S S+LD V V+ YGS P+ QV ++ Sbjct: 1 MMDEIKLA-LNTQMTKSIDSLKYQLTKVRTGRASASVLDGVHVDYYGSPTPVAQVGQIST 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R+L + +DK M+A++E+ I +NLGL P +G ++RIP P TEERR VK Sbjct: 60 PEARLLQIQPFDKTMIAAIEKAILGANLGLTPSNDGNLIRIPFPALTEERRKEQVKEIKK 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E +KI +RN RRD + +KK+ K+ + SED + DIQ ITD + +D E K+ Sbjct: 120 SGEDAKIGIRNSRRDQNEVVKKAEKAKEISEDESKKFQADIQTITDKYVAEVDVIIEAKE 179 Query: 181 KEIMHF 186 KE++ Sbjct: 180 KELLSI 185 >gi|15902890|ref|NP_358440.1| ribosome recycling factor [Streptococcus pneumoniae R6] gi|116516857|ref|YP_816318.1| ribosome recycling factor [Streptococcus pneumoniae D39] gi|32171542|sp|Q8DQ49|RRF_STRR6 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|122278796|sp|Q04KY0|RRF_STRP2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|15458449|gb|AAK99650.1| Ribosome recycling factor [Streptococcus pneumoniae R6] gi|116077433|gb|ABJ55153.1| ribosome recycling factor [Streptococcus pneumoniae D39] Length = 185 Score = 231 bits (589), Expect = 5e-59, Method: Composition-based stats. Identities = 75/186 (40%), Positives = 117/186 (62%), Gaps = 1/186 (0%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M VI ++ K+RM + L ++ +R GR + S+LD V VE YG PLNQ+A++T+ Sbjct: 1 MANVI-IEKAKERMTQSHQSLAREFGGIRAGRANASLLDRVHVEYYGVETPLNQIASITI 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R+L+V+ +DK + ++R ++ S+LG+ P +G V+R+ +P TEE R L K Sbjct: 60 PEARVLLVTPFDKSSLKDIDRALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKK 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E +K++VRNIRRD MD KK K+ + +ED + +LE DIQK+TD +K+ID K+ Sbjct: 120 VGENAKVAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKE 179 Query: 181 KEIMHF 186 KE++ Sbjct: 180 KELLEV 185 >gi|71899406|ref|ZP_00681565.1| Ribosome recycling factor [Xylella fastidiosa Ann-1] gi|71730815|gb|EAO32887.1| Ribosome recycling factor [Xylella fastidiosa Ann-1] Length = 190 Score = 231 bits (589), Expect = 5e-59, Method: Composition-based stats. Identities = 82/179 (45%), Positives = 122/179 (68%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ +DRM +I L+ + ++RTGR SPS+LD +K++AYG+ PLNQVA+++V E R LV Sbjct: 12 QDAQDRMTKSIDALRNSLASVRTGRASPSLLDGIKIKAYGTDTPLNQVASISVSEGRSLV 71 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DK M VE+ I+ S+LGL P V G ++R+ +P TEERR L KV H+ E +K+ Sbjct: 72 ITVFDKNMSKDVEKAIYASDLGLTPTVVGTLIRLNLPPLTEERRKELTKVVHSEGEDTKV 131 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD +K KS + +ED V E DIQK+TD IK++D + K++E+M Sbjct: 132 AIRNIRRDANQQIKDMLKSKEITEDEVRHGEEDIQKLTDKAIKSVDKVVKSKEQELMTV 190 >gi|325983649|ref|YP_004296051.1| ribosome recycling factor [Nitrosomonas sp. AL212] gi|325533168|gb|ADZ27889.1| ribosome recycling factor [Nitrosomonas sp. AL212] Length = 185 Score = 231 bits (589), Expect = 5e-59, Method: Composition-based stats. Identities = 72/179 (40%), Positives = 111/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + +M ++ LK D+ +R+GR LD + V+ YG+ PL+QVAN+ +++ R + Sbjct: 7 KSAEQKMQKSLEALKVDLSKVRSGRAHAGFLDHITVDYYGTQTPLSQVANINLIDARTIG 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K+M +E+ I ES+LGLNP+ G+ +R+P+P TEERR L+KV AE +I Sbjct: 67 VIPWEKKMGNVIEKAIRESDLGLNPMPVGETIRVPMPALTEERRRDLIKVVKQEAENVRI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD HLK KS + SED +++IQK+TD I ID K+ E+M Sbjct: 127 AMRNIRRDANTHLKDLLKSKEISEDDERRGQDEIQKLTDRYITEIDKILHIKETELMAV 185 >gi|312194965|ref|YP_004015026.1| ribosome recycling factor [Frankia sp. EuI1c] gi|311226301|gb|ADP79156.1| ribosome recycling factor [Frankia sp. EuI1c] Length = 185 Score = 231 bits (589), Expect = 5e-59, Method: Composition-based stats. Identities = 62/180 (34%), Positives = 111/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M ++ K D +RTGR++PS+ + V+ YG+ P+ Q+A+ + EPRM+ Sbjct: 6 LLEAEEKMDKAVTVAKDDFANIRTGRITPSVFSKILVDYYGAPTPVQQLASFHIPEPRMV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK ++++E+ + +S+LG+NP +G ++R+ PE +E+RR LVKVA AE +K Sbjct: 66 IITPFDKSSLSAIEKAVRDSDLGVNPSNDGTIIRVVFPELSEQRRRDLVKVARGKAEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 IS+RN+RR + L K K G A ED E D+++ T + ID + K+ +++ Sbjct: 126 ISIRNVRRHAKEALDKIVKDGDAGEDEGRRAEKDLEESTHRYVAQIDELLKAKESDLLSV 185 >gi|18310679|ref|NP_562613.1| ribosome recycling factor [Clostridium perfringens str. 13] gi|110800605|ref|YP_696384.1| ribosome recycling factor [Clostridium perfringens ATCC 13124] gi|110802993|ref|YP_698984.1| ribosome recycling factor [Clostridium perfringens SM101] gi|168208114|ref|ZP_02634119.1| ribosome recycling factor [Clostridium perfringens E str. JGS1987] gi|168211415|ref|ZP_02637040.1| ribosome recycling factor [Clostridium perfringens B str. ATCC 3626] gi|168214470|ref|ZP_02640095.1| ribosome recycling factor [Clostridium perfringens CPE str. F4969] gi|168216984|ref|ZP_02642609.1| ribosome recycling factor [Clostridium perfringens NCTC 8239] gi|169342698|ref|ZP_02863739.1| ribosome recycling factor [Clostridium perfringens C str. JGS1495] gi|182627138|ref|ZP_02954853.1| ribosome recycling factor [Clostridium perfringens D str. JGS1721] gi|20141648|sp|Q46293|RRF_CLOPE RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|122956643|sp|Q0SSC3|RRF_CLOPS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|123344670|sp|Q0TPQ6|RRF_CLOP1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|18145360|dbj|BAB81403.1| ribosome recycling factor [Clostridium perfringens str. 13] gi|110675252|gb|ABG84239.1| ribosome recycling factor [Clostridium perfringens ATCC 13124] gi|110683494|gb|ABG86864.1| ribosome recycling factor [Clostridium perfringens SM101] gi|169299204|gb|EDS81274.1| ribosome recycling factor [Clostridium perfringens C str. JGS1495] gi|170660605|gb|EDT13288.1| ribosome recycling factor [Clostridium perfringens E str. JGS1987] gi|170710572|gb|EDT22754.1| ribosome recycling factor [Clostridium perfringens B str. ATCC 3626] gi|170714030|gb|EDT26212.1| ribosome recycling factor [Clostridium perfringens CPE str. F4969] gi|177907475|gb|EDT70141.1| ribosome recycling factor [Clostridium perfringens D str. JGS1721] gi|182380949|gb|EDT78428.1| ribosome recycling factor [Clostridium perfringens NCTC 8239] Length = 185 Score = 231 bits (589), Expect = 5e-59, Method: Composition-based stats. Identities = 78/180 (43%), Positives = 123/180 (68%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +++M TI+ L ++ T++ GR +P+MLD ++VE YGS PLNQVANV+ EPR+L Sbjct: 6 IKKSEEKMNKTINSLNSELATMKAGRANPTMLDRIQVEYYGSMCPLNQVANVSSPEPRLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V++ W+K M+ +E+ I +S+LG+NP +G ++R+ VPE TEE R LVK E++K Sbjct: 66 VITPWEKPMLKEIEKAILKSDLGINPNNDGTIIRLLVPELTEETRKNLVKNVKKVGEQAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++R+IR+D D +K +K G +ED + E+DIQK+TD +K ID+ K+KEIM Sbjct: 126 VAIRSIRKDANDKVKNFKKEGTITEDEMKKGEDDIQKVTDKFVKEIDTIVAAKEKEIMSI 185 >gi|77408576|ref|ZP_00785312.1| ribosome recycling factor [Streptococcus agalactiae COH1] gi|77172850|gb|EAO75983.1| ribosome recycling factor [Streptococcus agalactiae COH1] Length = 185 Score = 231 bits (589), Expect = 5e-59, Method: Composition-based stats. Identities = 74/180 (41%), Positives = 114/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + ++R + L ++ +R GR + S+LD ++VE YG+ PLNQ+A++TV E R+L Sbjct: 6 VTKAQERFEQSHQSLSREFAGIRAGRANASLLDRIQVEYYGAPTPLNQLASITVPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +DK + +ER I+ES+LG+NP +G V+R+ +P TEE R L K E +K Sbjct: 66 LISPFDKSSIKDIERAINESDLGINPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIRRD MD K K+ + +ED + SLE DIQK TD +K+ID K+KE++ Sbjct: 126 IAIRNIRRDAMDEAXKQEKNKEITEDDLKSLEKDIQKATDDAVKHIDEMTVNKEKELLEV 185 >gi|284032627|ref|YP_003382558.1| ribosome recycling factor [Kribbella flavida DSM 17836] gi|283811920|gb|ADB33759.1| ribosome recycling factor [Kribbella flavida DSM 17836] Length = 185 Score = 231 bits (589), Expect = 5e-59, Method: Composition-based stats. Identities = 68/180 (37%), Positives = 108/180 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ + +M + K D +RTGR PSM + + YGS PL Q+A V EPR + Sbjct: 6 LREAEQKMAKAVEVAKNDFAAIRTGRAHPSMFASLLADYYGSPTPLQQLAGFQVPEPRTV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +DK +A++E+ I +S+LG+NP +G V+R+ +P+ TEERR +KVA AE++K Sbjct: 66 LISPYDKGAMAAIEKAIRDSDLGVNPGNDGSVIRVVMPQLTEERRKEYIKVARTKAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+RNIRR D + K+ K G+A ED S E + +T + +ID + K+ E++ Sbjct: 126 VSMRNIRRHAKDVVDKTVKDGQAGEDEGKSAEKRLDGLTKKYVDSIDELLKHKEAELLEV 185 >gi|86140791|ref|ZP_01059350.1| ribosome releasing factor [Leeuwenhoekiella blandensis MED217] gi|85832733|gb|EAQ51182.1| ribosome releasing factor [Leeuwenhoekiella blandensis MED217] Length = 187 Score = 231 bits (589), Expect = 5e-59, Method: Composition-based stats. Identities = 78/188 (41%), Positives = 112/188 (59%), Gaps = 3/188 (1%) Query: 1 MNQVID--LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 MN+ I L ++ M + ++ LKK +R G+ SPSML V V+ YGS PL QVANV Sbjct: 1 MNEDIQFILDGTEEAMQNAVNHLKKQFANIRAGKASPSMLGSVMVDYYGSQTPLAQVANV 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 + R + + W+K M+ +E+ I +NLG NP+ G+ + I VP TEERR LVK A Sbjct: 61 NTPDGRTISIQPWEKSMIQEIEKAIMNANLGFNPMNNGESVIINVPPLTEERRRDLVKQA 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 A AE +K+ VRN R++ + +KK K G +ED+ ++ E D+Q +TD IK ID Sbjct: 121 KAEAEDAKVGVRNDRKNANNDIKKLEKDG-LAEDICSNAEVDVQDLTDKYIKRIDELLAV 179 Query: 179 KKKEIMHF 186 K+KEI+ Sbjct: 180 KEKEILTV 187 >gi|288575126|ref|ZP_06393483.1| ribosome recycling factor [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570867|gb|EFC92424.1| ribosome recycling factor [Dethiosulfovibrio peptidovorans DSM 11002] Length = 186 Score = 231 bits (589), Expect = 5e-59, Method: Composition-based stats. Identities = 68/184 (36%), Positives = 116/184 (63%), Gaps = 1/184 (0%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ V +++++M + FLK + + +RTGR P ++ +KV+ YG+ PL Q+A ++V Sbjct: 1 MSDVTKF-DLEEKMRKAVDFLKGEFVGIRTGRAHPGLVSDIKVDYYGASTPLKQLATISV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R L+++ +DK ++ +E+ I S+LG+ P +GQV+R+ +PE T +RR L K+ H Sbjct: 60 PEGRSLLITPFDKTVLKDLEKAILASDLGVTPQNDGQVIRLNLPELTGDRRKELTKMVHK 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 +E+++I+VRN+RRD D KK + ED + IQKITD I+ ID ++K+ Sbjct: 120 LSEEARIAVRNLRRDCNDFYKKKLNESEIGEDQYHDFLDQIQKITDGYIQEIDKVMKDKE 179 Query: 181 KEIM 184 +EI+ Sbjct: 180 EEIL 183 >gi|195978553|ref|YP_002123797.1| ribosome recycling factor [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225868107|ref|YP_002744055.1| ribosome recycling factor [Streptococcus equi subsp. zooepidemicus] gi|225870940|ref|YP_002746887.1| ribosome recycling factor [Streptococcus equi subsp. equi 4047] gi|226749941|sp|B4U467|RRF_STREM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|254809531|sp|C0MBT1|RRF_STRE4 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|259494555|sp|C0MCC9|RRF_STRS7 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|195975258|gb|ACG62784.1| ribosome recycling factor Frr [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225700344|emb|CAW94656.1| ribosome recycling factor [Streptococcus equi subsp. equi 4047] gi|225701383|emb|CAW98452.1| ribosome recycling factor [Streptococcus equi subsp. zooepidemicus] Length = 185 Score = 231 bits (589), Expect = 5e-59, Method: Composition-based stats. Identities = 71/180 (39%), Positives = 115/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+R + L ++ ++R GR + S+LD ++V+ YG+ PLNQ+A++TV E R+L Sbjct: 6 IETAKERFTQSHHSLAREYASIRAGRANASLLDRIQVDYYGAPTPLNQLASITVPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +DK + +ER ++ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LISPFDKSSIKDIERALNASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGETAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+RNIRRD MD KK K+ + +ED + +LE DIQK TD +K ID +K+KE++ Sbjct: 126 VSIRNIRRDAMDEAKKQEKAKEITEDELKALEKDIQKATDEAVKEIDRMTADKEKELLSV 185 >gi|297624998|ref|YP_003706432.1| ribosome recycling factor [Truepera radiovictrix DSM 17093] gi|297166178|gb|ADI15889.1| ribosome recycling factor [Truepera radiovictrix DSM 17093] Length = 184 Score = 231 bits (589), Expect = 5e-59, Method: Composition-based stats. Identities = 67/180 (37%), Positives = 111/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + RM ++ + ++ +RTGR +P++L+ ++V YG+ PLNQ+A V+ + R L Sbjct: 5 LDEARTRMQKSLEAFENNIAAVRTGRANPAILNRIQVNYYGAQTPLNQLATVSSPDARTL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V++ +DK + +E+ I ES+LG NP G L I VP +ERR ALVK AE+++ Sbjct: 65 VITPFDKSVAKDIEKAIRESDLGFNPNNRGDSLFISVPPLNDERRRALVKQVKTMAEEAR 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RRD + LK+ RK ++D + END+Q++TD + ID + K+++IM Sbjct: 125 VAVRNVRRDANEELKEMRKENLLTDDELRQGENDVQRLTDEFVGQIDKRVKSKEEDIMAV 184 >gi|290968867|ref|ZP_06560404.1| ribosome recycling factor [Megasphaera genomosp. type_1 str. 28L] gi|290781163|gb|EFD93754.1| ribosome recycling factor [Megasphaera genomosp. type_1 str. 28L] Length = 186 Score = 231 bits (589), Expect = 5e-59, Method: Composition-based stats. Identities = 76/180 (42%), Positives = 122/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +QN +++M TI LK+D ++RTGR S S+LD V VE YG+ P+ QVANV+ EP ++ Sbjct: 7 VQNYEEKMDKTIEALKRDFTSIRTGRASTSLLDRVTVEYYGTPTPIKQVANVSAPEPSLI 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + W+++++ +E+ I +S+LGLNP +G ++R+ +P+ TEERR L K YAE++K Sbjct: 67 TIVPWERKILGDIEKAILKSDLGLNPNNDGAMIRLEIPKPTEERRKELTKKVSKYAEEAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 + +RNIRRD D +KK+ K+ + +ED +++ IQK+TD +K ID +K+KE+M Sbjct: 127 VVIRNIRRDANDSIKKAEKAKEITEDESKDVQDKIQKLTDKKVKFIDELKLKKEKEVMEV 186 >gi|219847470|ref|YP_002461903.1| ribosome recycling factor [Chloroflexus aggregans DSM 9485] gi|254809501|sp|B8G461|RRF_CHLAD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|219541729|gb|ACL23467.1| ribosome recycling factor [Chloroflexus aggregans DSM 9485] Length = 185 Score = 231 bits (589), Expect = 5e-59, Method: Composition-based stats. Identities = 73/186 (39%), Positives = 119/186 (63%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N VI+ + + L+ + ++RTGR S ++++ + VEAYG+++PLNQ+AN++V Sbjct: 2 LNDVIN--EYEAHLKKATEALRHHLASIRTGRASAALVEHLHVEAYGTNMPLNQLANISV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPRM+++ +D M+ ++E+ I +S+LGLNP +G+++R+PVP TEERR LVK+ Sbjct: 60 PEPRMIIIQPYDTGMIKAIEKAIQQSDLGLNPSNDGRIIRLPVPPLTEERRRELVKMVRH 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E+ K+SVRN RRD +D LKK SED + + IQ++TD + +D EK+ Sbjct: 120 RVEEVKVSVRNQRRDAIDDLKKLEADKLISEDELHRGQERIQQLTDRCNRELDQIGAEKE 179 Query: 181 KEIMHF 186 E+M Sbjct: 180 AEVMAI 185 >gi|295114850|emb|CBL35697.1| ribosome recycling factor [butyrate-producing bacterium SM4/1] Length = 181 Score = 231 bits (589), Expect = 5e-59, Method: Composition-based stats. Identities = 72/173 (41%), Positives = 108/173 (62%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 +++M + L + ++R GR +P +LD ++V+ YG+ PL QVAN++V EPRM+ + Sbjct: 9 EEKMDKSYDALLNEFSSIRAGRANPHVLDKLRVDYYGAPTPLQQVANISVPEPRMIQIQP 68 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 W+K +V ++E+ I S+LG+NP +G V+R+ PE TEERR L K E +K++VR Sbjct: 69 WEKSLVKAIEKAILTSDLGINPSNDGSVIRLIFPELTEERRKELAKDIKKKGEGAKVAVR 128 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 NIRRD D KK K+ + SED ++ E IQK+TD I ID E K K + Sbjct: 129 NIRRDANDTFKKMEKANEISEDDLSDAEEKIQKMTDKMIDKIDKAVETKTKRL 181 >gi|291557942|emb|CBL35059.1| ribosome recycling factor [Eubacterium siraeum V10Sc8a] Length = 184 Score = 231 bits (589), Expect = 5e-59, Method: Composition-based stats. Identities = 70/186 (37%), Positives = 114/186 (61%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M VI+ KD+MG ++ ++ + ++R GR +P++LD V V+ YG +N +A V V Sbjct: 1 MKDVIN--TAKDKMGKCVAAVETEYASIRAGRANPAVLDKVTVDYYGVPTQINAMAAVAV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R+LV++ WD + S+E+ I S++G+ P +G+ +RI P+ TEERR L K Sbjct: 59 SEARVLVITPWDASTLKSIEKAILASDIGITPTNDGKAIRITFPQLTEERRKELCKQVKK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE+ K++VRN+RRD M+ K +K+ + +ED + + E D+QK+TD +D+ K+ Sbjct: 119 IAEEGKVAVRNVRRDAMEKFKAMKKNSEITEDDLKNCEKDVQKLTDKYCDEMDAACSAKE 178 Query: 181 KEIMHF 186 KEIM Sbjct: 179 KEIMTV 184 >gi|313891269|ref|ZP_07824887.1| ribosome recycling factor [Streptococcus pseudoporcinus SPIN 20026] gi|313120336|gb|EFR43457.1| ribosome recycling factor [Streptococcus pseudoporcinus SPIN 20026] Length = 185 Score = 230 bits (588), Expect = 5e-59, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 114/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + K R + L ++ ++R GR + S+LD ++V+ YG+ PLNQ++++TV E R+L Sbjct: 6 IDKAKQRFEQSFQSLSREYASIRAGRANASLLDRIQVDYYGAPTPLNQLSSITVPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +DK + +ER I+ S+LG+ P +G V+R+ +P TEE R L K E K Sbjct: 66 LISPFDKNSIKDIERAINASDLGITPANDGSVIRLVIPALTEETRKNLAKEVKKVGENQK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD MD KK K + SED + +LE DIQK+TD IK+ID+ EK+KE++ Sbjct: 126 VAIRNIRRDAMDEAKKQEKDKEISEDELKTLEKDIQKVTDDAIKHIDAMTAEKEKELLSV 185 >gi|270290321|ref|ZP_06196546.1| ribosome recycling factor [Pediococcus acidilactici 7_4] gi|270281102|gb|EFA26935.1| ribosome recycling factor [Pediococcus acidilactici 7_4] Length = 186 Score = 230 bits (588), Expect = 5e-59, Method: Composition-based stats. Identities = 65/179 (36%), Positives = 116/179 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ +++M L++D+ ++R GR + S+LD V V+ YG+ PLNQ+A++++ EPR+L Sbjct: 7 LKTAEEKMHKAHQALERDLGSIRAGRANASLLDRVTVDYYGAPTPLNQMASISIPEPRVL 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK ++ +E+ + ++LG+NP +G +R+ +P+ TEE R L K A EK K Sbjct: 67 LITPYDKSVLNDIEQALLVADLGINPANDGSAIRLVIPQLTEETRKELAKDVKAEGEKGK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +++RN+RR+ M+ LKK+ K+G ++D LE Q ITD IK ++ K+KE++ Sbjct: 127 VAIRNVRREAMEALKKAHKNGDYNDDEFHDLEKQAQDITDKAIKKVEEIVANKEKEVLE 185 >gi|158320548|ref|YP_001513055.1| ribosome recycling factor [Alkaliphilus oremlandii OhILAs] gi|166991552|sp|A8MHH2|RRF_ALKOO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|158140747|gb|ABW19059.1| ribosome recycling factor [Alkaliphilus oremlandii OhILAs] Length = 185 Score = 230 bits (588), Expect = 5e-59, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 124/179 (69%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N++++M TI+ LK ++ ++R GR +P+MLD + VE YGS P+ Q+A +T EPR++ Sbjct: 7 KNLEEKMNKTINALKDELASIRAGRANPAMLDRIVVEYYGSPTPIKQIAAITAPEPRIIS 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +D ++S+E+ I +S+LG+NP +G+++RI VP+ TEERR L KVA +E +K+ Sbjct: 67 IQPYDGSALSSIEKAILQSDLGVNPSNDGKLIRIIVPQLTEERRKELTKVAKKTSEDAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +RN RR+ D LKK +K + +ED + + ++++QKITD IK +D E+K+K+IM Sbjct: 127 VLRNERRNANDRLKKMQKDNEITEDELKTAQDEVQKITDKFIKMVDELTEKKEKDIMEV 185 >gi|302865909|ref|YP_003834546.1| ribosome recycling factor [Micromonospora aurantiaca ATCC 27029] gi|315502466|ref|YP_004081353.1| ribosome recycling factor [Micromonospora sp. L5] gi|302568768|gb|ADL44970.1| ribosome recycling factor [Micromonospora aurantiaca ATCC 27029] gi|315409085|gb|ADU07202.1| ribosome recycling factor [Micromonospora sp. L5] Length = 185 Score = 230 bits (588), Expect = 6e-59, Method: Composition-based stats. Identities = 61/180 (33%), Positives = 105/180 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M I K++ +RTGR + +M + ++ YGS PL Q+A++ V EPRM+ Sbjct: 6 LLEAEEKMERAIEHAKEEFGGIRTGRANAAMFSRIVIDYYGSPTPLPQMASIAVPEPRMV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D + ++E+ I +S+LG NP EG LRI +P+ TEERR ++KVA E++K Sbjct: 66 IIKPYDNSQLGAMEKAIRDSDLGANPNNEGNQLRIVLPQMTEERRRDMIKVARQKGEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRR + L + K G+ ED E ++ +T + +D + K+ E++ Sbjct: 126 VAVRNIRRKAKEELDRLVKDGEVGEDEGRRAEKELDDLTQRFVAGVDELVKHKESELLEV 185 >gi|312866459|ref|ZP_07726677.1| ribosome recycling factor [Streptococcus downei F0415] gi|311098153|gb|EFQ56379.1| ribosome recycling factor [Streptococcus downei F0415] Length = 185 Score = 230 bits (588), Expect = 6e-59, Method: Composition-based stats. Identities = 75/180 (41%), Positives = 114/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + +R + L ++ +R GR + S+LD ++V+ YG+ PLNQ+A++TV E R+L Sbjct: 6 IDKANERFKHSHEALGREFSAIRAGRANASLLDRIEVDYYGAPTPLNQLASITVPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +DK + +ER I+ES+LG+NP +G V+R+ +P TEE R L K E +K Sbjct: 66 LISPFDKNSIKEIERAINESDLGINPANDGSVIRLVIPALTEETRKDLAKEVKKLGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD MD KK K + +ED + SLE DIQK TD +K IDS EK+KE++ Sbjct: 126 VAIRNIRRDAMDDAKKQEKDKEITEDELKSLEKDIQKATDDAVKKIDSMTNEKEKELLTV 185 >gi|303240826|ref|ZP_07327339.1| ribosome recycling factor [Acetivibrio cellulolyticus CD2] gi|302591714|gb|EFL61449.1| ribosome recycling factor [Acetivibrio cellulolyticus CD2] Length = 185 Score = 230 bits (588), Expect = 6e-59, Method: Composition-based stats. Identities = 71/179 (39%), Positives = 121/179 (67%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++I+++M TI+ LK ++ +R GR +P++LD + V+ YG+ P+NQ+A+V+V E R+++ Sbjct: 7 KSIEEKMKKTINVLKDELTGVRAGRANPAILDKLTVDYYGTPTPINQIASVSVPEGRVIM 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + W+ +M+ +E+ I +S++G+NP +G+V+R+ P TEERR L KV Y E +K+ Sbjct: 67 IQPWEAKMIKEIEKEIQKSDIGINPNNDGKVIRLVFPMLTEERRKELTKVVKKYGEDAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++R IRRDG++H+K +K G+ +ED + + E DIQ +TD I ID E K EI+ Sbjct: 127 AIRAIRRDGIEHMKTLKKDGELTEDDLKTAEKDIQNMTDKYIAEIDKVVELKDAEILEV 185 >gi|119477105|ref|ZP_01617341.1| ribosome releasing factor [marine gamma proteobacterium HTCC2143] gi|119449468|gb|EAW30706.1| ribosome releasing factor [marine gamma proteobacterium HTCC2143] Length = 185 Score = 230 bits (588), Expect = 6e-59, Method: Composition-based stats. Identities = 73/179 (40%), Positives = 108/179 (60%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ ++RM T+ L + +RTGR PS+LD ++V YGS PL+Q+A + V + R L Sbjct: 7 QDAQERMQKTLVALGGALNKIRTGRAHPSILDGLRVNYYGSETPLSQLAAINVEDARTLS 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K +V VER I +S+LGLNP G V+RIP+P TEE R + A AE S++ Sbjct: 67 VVPWEKAIVPDVERAIMKSDLGLNPSTAGTVIRIPMPMLTEETRRGFTRQAKKEAEHSRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RNIRRD + +K +K + SED ++DIQK+TD + I+ K+ ++M Sbjct: 127 SIRNIRRDVIADIKDLQKEKEISEDQERKAQDDIQKLTDRFVGEIEVILSAKEADLMEI 185 >gi|322392100|ref|ZP_08065562.1| ribosome recycling factor [Streptococcus peroris ATCC 700780] gi|321145000|gb|EFX40399.1| ribosome recycling factor [Streptococcus peroris ATCC 700780] Length = 185 Score = 230 bits (588), Expect = 6e-59, Method: Composition-based stats. Identities = 71/180 (39%), Positives = 113/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+RM + L ++ +R GR + S+LD + VE YG PLNQ+A++T+ E R+L Sbjct: 6 VEKAKERMTQSHHSLAREFGGIRAGRANASLLDRITVEYYGVETPLNQIASITIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + +ER ++ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD MD KK K+ + +ED + +LE +IQK TD +K+ID K+KEI+ Sbjct: 126 VAIRNIRRDAMDEAKKQEKAKEITEDELKTLEKEIQKATDDAVKHIDDMTANKEKEILEV 185 >gi|322385103|ref|ZP_08058750.1| ribosome recycling factor [Streptococcus cristatus ATCC 51100] gi|321270727|gb|EFX53640.1| ribosome recycling factor [Streptococcus cristatus ATCC 51100] Length = 185 Score = 230 bits (588), Expect = 6e-59, Method: Composition-based stats. Identities = 72/180 (40%), Positives = 114/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+RM + L ++ ++R GR + S+LD + VE YG PLNQ++++T+ E R+L Sbjct: 6 VEKAKERMTHSHQSLAREFGSIRAGRANASLLDRIHVEYYGVETPLNQLSSITIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + +ER I+ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LVTPFDKSSIKDIERAINASDLGITPSSDGSVIRLVIPALTEETRRELAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIRRD MD KK K+ + +ED + LE DIQK+TD +K+ID K+KE++ Sbjct: 126 IAIRNIRRDAMDEAKKQEKAKEITEDELKVLEKDIQKVTDDAVKHIDDMTATKEKELLEV 185 >gi|225077039|ref|ZP_03720238.1| hypothetical protein NEIFLAOT_02091 [Neisseria flavescens NRL30031/H210] gi|224951596|gb|EEG32805.1| hypothetical protein NEIFLAOT_02091 [Neisseria flavescens NRL30031/H210] Length = 185 Score = 230 bits (588), Expect = 6e-59, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 112/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + + +M ++ LK ++ +RTGR +LD V+VE +GS VP++QVANVT+L+ R + Sbjct: 7 KTAEGKMQRSLEVLKDNLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVANVTLLDARTIG 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V ++ M A VE+ I +SNLGLNP G ++R+P+P TEERR L+KV AE+ ++ Sbjct: 67 VKPFESNMAAKVEKAIRDSNLGLNPASVGDLIRVPMPMLTEERRKDLIKVVRGEAEEGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRN+RRD DH+KK K + SED E +QK+TD I D K++++M Sbjct: 127 SVRNVRRDANDHIKKLLKDKEISEDEARRGEEAVQKLTDKYIAEADKLLAAKEEDLMAI 185 >gi|168494373|ref|ZP_02718516.1| ribosome recycling factor [Streptococcus pneumoniae CDC3059-06] gi|183575679|gb|EDT96207.1| ribosome recycling factor [Streptococcus pneumoniae CDC3059-06] Length = 185 Score = 230 bits (588), Expect = 6e-59, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 114/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+RM + L ++ +R GR + S+LD V VE YG PLNQ+A++T+ E R+L Sbjct: 6 IEKAKERMTQSHHSLAREFGAIRAGRANASLLDRVHVEYYGVETPLNQIASITIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + +ER ++ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD MD KK K+ + +ED + +LE DIQK+TD +K+ID K+KE++ Sbjct: 126 VAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELLEV 185 >gi|209885087|ref|YP_002288944.1| ribosome recycling factor [Oligotropha carboxidovorans OM5] gi|254809524|sp|B6JH69|RRF_OLICO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|209873283|gb|ACI93079.1| ribosome recycling factor [Oligotropha carboxidovorans OM5] Length = 183 Score = 230 bits (588), Expect = 6e-59, Method: Composition-based stats. Identities = 95/182 (52%), Positives = 125/182 (68%), Gaps = 4/182 (2%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D+ ++K RM L+ ++ LRTGR + SML+ V+VEAYGSH+PLNQVA V+V EPR Sbjct: 6 FDINDLKRRMDGAKESLRYELGGLRTGRAAISMLEPVQVEAYGSHMPLNQVATVSVPEPR 65 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 +L V VWDK MV +VE I SNLGLNP EGQV+R+ +PE EERR LVKVAH YAE Sbjct: 66 LLSVQVWDKSMVKAVETAIVNSNLGLNPATEGQVIRLRIPELNEERRKELVKVAHKYAEA 125 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++++VR++RRDG+D +KK K SED +IQK+TD+ I +ID K+KEI+ Sbjct: 126 ARVAVRHVRRDGLDIVKK----DKMSEDEQERASGEIQKVTDAAIADIDKLLATKEKEIL 181 Query: 185 HF 186 Sbjct: 182 TV 183 >gi|225873898|ref|YP_002755357.1| ribosome recycling factor [Acidobacterium capsulatum ATCC 51196] gi|225791980|gb|ACO32070.1| ribosome recycling factor [Acidobacterium capsulatum ATCC 51196] Length = 195 Score = 230 bits (588), Expect = 6e-59, Method: Composition-based stats. Identities = 71/179 (39%), Positives = 106/179 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q +K RM + + + +LRTGR S MLD ++V+ YG+ PLNQV V + + +V Sbjct: 17 QQLKTRMDKAVKDFQTQLTSLRTGRASVQMLDQIRVDYYGTPTPLNQVGQVNTPDAQSIV 76 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V WD ++ +E + S+LG NP +G+++RIPVP TEERR +VK + E+ + Sbjct: 77 VQPWDTSILKDIENALRTSDLGFNPQNDGKIIRIPVPPMTEERRREVVKHLNKVLEEHRT 136 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 VRNIRRDG D +KK+ K SED +++QK+TD IK ++ +K+ EIM Sbjct: 137 GVRNIRRDGNDAIKKAAKDKLISEDEEKRSLDEMQKLTDEEIKRMEEISRKKEAEIMQV 195 >gi|254392087|ref|ZP_05007276.1| ribosome recycling factor [Streptomyces clavuligerus ATCC 27064] gi|326443741|ref|ZP_08218475.1| ribosome recycling factor [Streptomyces clavuligerus ATCC 27064] gi|197705763|gb|EDY51575.1| ribosome recycling factor [Streptomyces clavuligerus ATCC 27064] Length = 185 Score = 230 bits (588), Expect = 6e-59, Method: Composition-based stats. Identities = 63/180 (35%), Positives = 106/180 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K+D +RTGR P+M + + + YG+ P+NQ+A+ +V EPRM Sbjct: 6 LLEAEEKMEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMA 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV+ +DK + ++E+ I +S+LG+NP +G ++R+ PE TEERR +KVA AE SK Sbjct: 66 VVTPFDKTALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEERRRDYIKVAKGKAEDSK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 IS+R++RR + + K K G+ ED E ++ T + +D + K+ E++ Sbjct: 126 ISIRSVRRKAKEAIDKLVKDGEVGEDEGRRGEKELDDTTAKYVAQVDELLKHKEAELLEV 185 >gi|146298338|ref|YP_001192929.1| ribosome recycling factor [Flavobacterium johnsoniae UW101] gi|190360242|sp|A5FMF6|RRF_FLAJO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|146152756|gb|ABQ03610.1| ribosome recycling factor [Flavobacterium johnsoniae UW101] Length = 187 Score = 230 bits (588), Expect = 6e-59, Method: Composition-based stats. Identities = 73/188 (38%), Positives = 117/188 (62%), Gaps = 3/188 (1%) Query: 1 MNQVID--LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 M + ID L++ ++ M +I+ L+K+ + +R G+ SP+ML V V+ YGS PL+QV+ + Sbjct: 1 MTEEIDFILESTEESMNGSIAHLEKEFLNIRAGKASPAMLGGVFVDYYGSATPLSQVSKI 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 +V + R + + ++K M+ ++E+ I +N+G NP+ G V+ I VP TEERR L K A Sbjct: 61 SVPDARTITLQPFEKNMLQAIEKAILIANIGFNPMNNGDVIIISVPPLTEERRRDLAKQA 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 + AE +KI +RN+R+D +KK K G SED+ S E ++Q +T++ IK ID Sbjct: 121 KSEAEDAKIGIRNVRKDANTDIKKLEKEG-TSEDICKSAEEEVQNLTNTYIKKIDELLAA 179 Query: 179 KKKEIMHF 186 K+ EIM Sbjct: 180 KEAEIMKV 187 >gi|256390730|ref|YP_003112294.1| ribosome recycling factor [Catenulispora acidiphila DSM 44928] gi|256356956|gb|ACU70453.1| ribosome recycling factor [Catenulispora acidiphila DSM 44928] Length = 185 Score = 230 bits (588), Expect = 6e-59, Method: Composition-based stats. Identities = 67/180 (37%), Positives = 106/180 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K+D+ +RTGR +P+M + + YGS PL+Q+A+ V + RM+ Sbjct: 6 LLEAEEKMDKAVEVAKEDLSGVRTGRANPAMFSKLTADYYGSPTPLSQMASFQVQDARMV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V++ +DK + ++ER I +S+LG+NP +G V+R+ P+ TEERR +KVA E +K Sbjct: 66 VIAPYDKTALGAIERSIRDSDLGVNPSSDGVVIRVVFPQLTEERRKEYIKVAKTKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ISVRNIRR + L K K G A ED V E + ++T ID + K+ E++ Sbjct: 126 ISVRNIRRHSKESLDKLAKDGDAGEDDVRRAEKHLDELTQKHTAQIDEMLKHKEAELLEV 185 >gi|319957835|ref|YP_004169098.1| ribosome recycling factor [Nitratifractor salsuginis DSM 16511] gi|319420239|gb|ADV47349.1| ribosome recycling factor [Nitratifractor salsuginis DSM 16511] Length = 185 Score = 230 bits (588), Expect = 7e-59, Method: Composition-based stats. Identities = 63/180 (35%), Positives = 112/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + +D M +I +K+D TLRTG+V+ ++D +KV+ YG+ PLNQV NVTV + + Sbjct: 6 FEETRDHMDKSIEAMKRDFATLRTGKVTTQIVDNIKVDYYGTPTPLNQVGNVTVTDATTI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ W+K M+ ++E+ I E+N+G+NP +G +++ P T E+R +VK A AEK+K Sbjct: 66 AINPWEKSMLPAIEKAIQEANIGVNPNNDGDFIKLFFPPMTVEQRQEIVKQAKQMAEKAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RN+R++ + +K+ + SED + + IQK+TD I +D + K+ +I+ Sbjct: 126 VAIRNVRKESNNKIKRLEHDKEISEDEMKRALDQIQKLTDEFIAKVDESLKAKEADILRV 185 >gi|171780175|ref|ZP_02921079.1| hypothetical protein STRINF_01963 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281523|gb|EDT46958.1| hypothetical protein STRINF_01963 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 185 Score = 230 bits (588), Expect = 7e-59, Method: Composition-based stats. Identities = 72/180 (40%), Positives = 114/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+R + S L ++ +R GR + S+LD ++VE YG+ PLNQ+A++TV E R+L Sbjct: 6 IEKAKERFEQSHSSLAREFAAIRAGRANASLLDRIQVEYYGAMTPLNQLASITVPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +DK + +E I+ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LISPFDKSSLKDIEHAINASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD MD KK K+ + +ED + LE DIQK TD +K+ID+ K+KE++ Sbjct: 126 VAIRNIRRDAMDEAKKQEKAKEITEDELKVLEKDIQKATDEAVKHIDAMTANKEKELLEV 185 >gi|239982586|ref|ZP_04705110.1| ribosome recycling factor [Streptomyces albus J1074] Length = 186 Score = 230 bits (588), Expect = 7e-59, Method: Composition-based stats. Identities = 62/180 (34%), Positives = 105/180 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K+D +RTGR P+M + + + YG+ P+NQ+A+ +V EPRM Sbjct: 7 LLEAEEKMEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMA 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV+ +D + ++E+ I +S+LG+NP +G+++R+ PE TEERR +KVA AE SK Sbjct: 67 VVTPFDSSALRNIEQAIRDSDLGVNPSNDGRIIRVSFPELTEERRREFIKVAKGKAEDSK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 IS+R +RR + + K K G+ ED E ++ T + +D + K+ E++ Sbjct: 127 ISIRAVRRKAKETIDKLVKDGEVGEDEGRRGEKELDDTTAKYVAQVDELLKHKEAELLEV 186 >gi|169350431|ref|ZP_02867369.1| hypothetical protein CLOSPI_01199 [Clostridium spiroforme DSM 1552] gi|169292751|gb|EDS74884.1| hypothetical protein CLOSPI_01199 [Clostridium spiroforme DSM 1552] Length = 181 Score = 230 bits (588), Expect = 7e-59, Method: Composition-based stats. Identities = 79/180 (43%), Positives = 115/180 (63%), Gaps = 4/180 (2%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +RMG TI K+D+ T+RTGR +P+MLD V V YGS P+NQ+A ++V+E R L Sbjct: 6 LDEASERMGKTIDSFKRDLTTVRTGRANPAMLDRVMVNYYGSPTPINQMAGISVVEGRQL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +DK ++ +E GI+E+ LGL P +G+++RI VP TE+RR K +AE +K Sbjct: 66 VIKPYDKSVIKDIEHGIYEAELGLTPQNDGEIIRIMVPALTEDRRREFAKQVWKFAENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+RNIRRD D +KK SED + + + +QK+TD +K ID + K+KEIM Sbjct: 126 VSIRNIRRDSNDEIKKV----DGSEDEIKAGQEKVQKLTDKFVKEIDEIAKVKEKEIMTV 181 >gi|294012399|ref|YP_003545859.1| ribosome recycling factor RF-4 [Sphingobium japonicum UT26S] gi|292675729|dbj|BAI97247.1| ribosome recycling factor RF-4 [Sphingobium japonicum UT26S] Length = 185 Score = 230 bits (588), Expect = 7e-59, Method: Composition-based stats. Identities = 94/180 (52%), Positives = 124/180 (68%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D +++ RM + LK D+ LRTGR + +LD V VE YG+H+PLNQVA V+ EPR Sbjct: 4 YDKADLERRMAGAVESLKGDLSGLRTGRANIQLLDPVTVEVYGAHMPLNQVATVSAPEPR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 ML V VWDK V V++ I + LGLNPIV+GQ LR+P+P+ TEERR L K+A YAE Sbjct: 64 MLSVQVWDKSNVGPVDKAIRSAGLGLNPIVDGQTLRLPIPDLTEERRKELAKLASKYAEG 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++I+VRN+RRDGMD LK K G+ SED E ++QK+TDSTI +ID+ K+KEI+ Sbjct: 124 ARIAVRNVRRDGMDSLKTDEKKGEISEDERKRKETEVQKLTDSTIADIDAATAAKEKEIL 183 >gi|239631340|ref|ZP_04674371.1| ribosome recycling factor [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066628|ref|YP_003788651.1| ribosome recycling factor [Lactobacillus casei str. Zhang] gi|239525805|gb|EEQ64806.1| ribosome recycling factor [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300439035|gb|ADK18801.1| Ribosome recycling factor [Lactobacillus casei str. Zhang] Length = 185 Score = 230 bits (587), Expect = 7e-59, Method: Composition-based stats. Identities = 79/185 (42%), Positives = 118/185 (63%), Gaps = 2/185 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 NQ+ID K MG T L++++ +R GR + S+L+ + VE YG+ PLNQ+A +T+ Sbjct: 3 NQIID--QAKVNMGKTEESLQRELGNIRAGRANASLLNQITVEYYGAPTPLNQMAAITIP 60 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 EPR+L VS +DK + ++E ++ S+LG+NP +G V+R+ +P+ T ERR + K Y Sbjct: 61 EPRVLQVSPYDKSSLKNIETALNASDLGINPANDGDVIRLVIPQLTGERRKEIAKEVGKY 120 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 +E +KI+VRNIRR+G+D LK+ K G +ED + LE D+QK TD K ID K+K Sbjct: 121 SESAKIAVRNIRREGLDKLKRQEKDGDITEDDLHRLEKDMQKATDDATKRIDEIAAAKEK 180 Query: 182 EIMHF 186 EI Sbjct: 181 EITEV 185 >gi|167750047|ref|ZP_02422174.1| hypothetical protein EUBSIR_01015 [Eubacterium siraeum DSM 15702] gi|167657068|gb|EDS01198.1| hypothetical protein EUBSIR_01015 [Eubacterium siraeum DSM 15702] gi|291530445|emb|CBK96030.1| ribosome recycling factor [Eubacterium siraeum 70/3] Length = 184 Score = 230 bits (587), Expect = 7e-59, Method: Composition-based stats. Identities = 70/186 (37%), Positives = 114/186 (61%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M VI+ KD+MG ++ ++ + ++R GR +P++LD V V+ YG +N +A V V Sbjct: 1 MKDVIN--TAKDKMGKCVAAVETEYASIRAGRANPAVLDKVTVDYYGVPTQINAMAAVAV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R+LV++ WD + S+E+ I S++G+ P +G+ +RI P+ TEERR L K Sbjct: 59 SEARVLVITPWDASTLKSIEKAILASDIGITPTNDGKAIRITFPQLTEERRKELCKQVKK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE+ K++VRN+RRD M+ K +K+ + +ED + + E D+QK+TD +D+ K+ Sbjct: 119 IAEEGKVAVRNVRRDAMEKFKAMKKNNEITEDDLKNCEKDVQKLTDKYCDEMDAACSAKE 178 Query: 181 KEIMHF 186 KEIM Sbjct: 179 KEIMTV 184 >gi|154484746|ref|ZP_02027194.1| hypothetical protein EUBVEN_02463 [Eubacterium ventriosum ATCC 27560] gi|149734594|gb|EDM50511.1| hypothetical protein EUBVEN_02463 [Eubacterium ventriosum ATCC 27560] Length = 184 Score = 230 bits (587), Expect = 7e-59, Method: Composition-based stats. Identities = 75/176 (42%), Positives = 112/176 (63%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 +D+M +++ L ++ T+R GR +P +LD +K++ YG+ PL QV NV+V E RM+ + Sbjct: 9 EDKMEKSLANLGEEYATIRAGRANPHILDKIKIDYYGTPTPLQQVGNVSVPEARMICIQP 68 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 WD ++ +E I+ S++G+NP +G+V+R+ PE TE+RR LVK E +KI++R Sbjct: 69 WDASILKDIEHAINMSDVGINPTNDGKVIRLVFPELTEDRRKELVKDVKKKGENAKIAIR 128 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 NIRRD +D +KK K SED V ++D+QK TD IK ID EEK EIM Sbjct: 129 NIRRDAIDAIKKKGKEDGISEDEVKGYQDDVQKKTDEYIKKIDVAIEEKSNEIMTV 184 >gi|116512953|ref|YP_811860.1| ribosome recycling factor [Lactococcus lactis subsp. cremoris SK11] gi|123320141|sp|Q02WC5|RRF_LACLS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|116108607|gb|ABJ73747.1| ribosome recycling factor [Lactococcus lactis subsp. cremoris SK11] Length = 185 Score = 230 bits (587), Expect = 7e-59, Method: Composition-based stats. Identities = 76/185 (41%), Positives = 125/185 (67%), Gaps = 2/185 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 N+++ ++RM +++ L++D+ LR GR + S+LD V+V YG+ PLNQ+A++T+ Sbjct: 3 NEIV--TTAQERMKHSLASLQRDLGHLRAGRANASLLDRVQVVYYGAPTPLNQLASITIP 60 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 E R+L+V+ +DK ++ +E+ ++ES+LG+ P +G V+R+ +P TEERR LVK Y Sbjct: 61 EARVLMVTPFDKSILKDIEKSLYESDLGITPANDGSVIRLVIPMLTEERRRELVKEMGKY 120 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 E +K+++RNIRRD MD KKS K+ + +ED + LEN+IQK+TD +K D K+K Sbjct: 121 IESAKVAIRNIRRDAMDTAKKSEKAKEITEDDLKDLENEIQKVTDDAVKEADRLASVKEK 180 Query: 182 EIMHF 186 E++ Sbjct: 181 ELLDI 185 >gi|225856606|ref|YP_002738117.1| ribosome recycling factor [Streptococcus pneumoniae P1031] gi|254809536|sp|C1CK29|RRF_STRZP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|225725685|gb|ACO21537.1| ribosome recycling factor [Streptococcus pneumoniae P1031] Length = 185 Score = 230 bits (587), Expect = 7e-59, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 113/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+RM + L ++ +R GR + S+LD + VE YG PLNQ+A++T+ E R+L Sbjct: 6 IEKAKERMTQSHQSLAREFGGIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + +ER ++ S+LG P +G V+R+ VP TEE R L K E +K Sbjct: 66 LVTPFDKSSLKDIERALNASDLGNTPANDGSVIRLVVPALTEETRRDLAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD MD KK K+ + +ED + +LE DIQK+TD +K+ID K+KE++ Sbjct: 126 VAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELLEV 185 >gi|241760709|ref|ZP_04758801.1| ribosome recycling factor [Neisseria flavescens SK114] gi|241318890|gb|EER55416.1| ribosome recycling factor [Neisseria flavescens SK114] Length = 185 Score = 230 bits (587), Expect = 7e-59, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 112/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + + +M ++ LK ++ +RTGR +LD V+VE +GS VP++QVANVT+L+ R + Sbjct: 7 KTAEGKMQRSLEVLKDNLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVANVTLLDARTIG 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V ++ M A VE+ I +SNLGLNP G ++R+P+P TEERR L+KV AE+ ++ Sbjct: 67 VKPFESNMAAKVEKAIRDSNLGLNPASVGDLIRVPMPMLTEERRKDLIKVVRGEAEEGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RN+RRD DH+KK K + SED E +QK+TD I D K++++M Sbjct: 127 SIRNVRRDANDHIKKLLKDKEISEDEARRGEEAVQKLTDKYIAEADKLLAAKEEDLMAI 185 >gi|304316875|ref|YP_003852020.1| ribosome recycling factor [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778377|gb|ADL68936.1| ribosome recycling factor [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 184 Score = 230 bits (587), Expect = 8e-59, Method: Composition-based stats. Identities = 72/180 (40%), Positives = 124/180 (68%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+N +++M +I+ LK ++M++R GR +P++LD + ++ YG+ P+N++A +T EP+++ Sbjct: 5 LKNTEEKMKKSIAVLKNELMSIRAGRANPALLDRISIDYYGTMTPINKLATITAPEPKVI 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WD ++ +E+ I +S+L +NP +G+++R+ P+ TEERR LVK+ H E+++ Sbjct: 65 IIQPWDTSKISEIEKAIQKSDLNINPTSDGKIIRLVFPDLTEERRKELVKLVHKKGEEAR 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VR IRRD D +KK K+G+ SED E +QK+TD IK ID E+K+KEIM F Sbjct: 125 VAVRQIRRDANDIIKKMDKNGEISEDEKLKSEESVQKLTDKYIKEIDKILEQKEKEIMEF 184 >gi|255283877|ref|ZP_05348432.1| ribosome recycling factor [Bryantella formatexigens DSM 14469] gi|255265598|gb|EET58803.1| ribosome recycling factor [Bryantella formatexigens DSM 14469] Length = 183 Score = 230 bits (587), Expect = 8e-59, Method: Composition-based stats. Identities = 77/180 (42%), Positives = 110/180 (61%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ ++M T + L + +R GR +P +LD + V+ YG+ P+ QV NV V E RM+ Sbjct: 5 MKVYDEKMTKTYNNLLAEFGAIRAGRANPHVLDRIMVDYYGTPTPIQQVGNVNVPEARMI 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WD M+ ++ + I S+LG+NP +G+V+R+ PE TEERR LVK E +K Sbjct: 65 QIQPWDTSMLKAITKAIQTSDLGINPTNDGRVIRLVFPELTEERRKDLVKEVKKKGEGAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD D KK K SED + LEN +QK+TD +K+IDS EEK KEIM Sbjct: 125 VAVRNIRRDANDAFKKL-KGTDVSEDTIKELENAMQKLTDKYMKDIDSAVEEKSKEIMTV 183 >gi|291454429|ref|ZP_06593819.1| ribosome recycling factor [Streptomyces albus J1074] gi|291357378|gb|EFE84280.1| ribosome recycling factor [Streptomyces albus J1074] Length = 185 Score = 230 bits (587), Expect = 8e-59, Method: Composition-based stats. Identities = 62/180 (34%), Positives = 105/180 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K+D +RTGR P+M + + + YG+ P+NQ+A+ +V EPRM Sbjct: 6 LLEAEEKMEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMA 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV+ +D + ++E+ I +S+LG+NP +G+++R+ PE TEERR +KVA AE SK Sbjct: 66 VVTPFDSSALRNIEQAIRDSDLGVNPSNDGRIIRVSFPELTEERRREFIKVAKGKAEDSK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 IS+R +RR + + K K G+ ED E ++ T + +D + K+ E++ Sbjct: 126 ISIRAVRRKAKETIDKLVKDGEVGEDEGRRGEKELDDTTAKYVAQVDELLKHKEAELLEV 185 >gi|255325237|ref|ZP_05366343.1| ribosome recycling factor [Corynebacterium tuberculostearicum SK141] gi|311739711|ref|ZP_07713546.1| ribosome recycling factor [Corynebacterium pseudogenitalium ATCC 33035] gi|255297802|gb|EET77113.1| ribosome recycling factor [Corynebacterium tuberculostearicum SK141] gi|311305527|gb|EFQ81595.1| ribosome recycling factor [Corynebacterium pseudogenitalium ATCC 33035] Length = 185 Score = 230 bits (587), Expect = 8e-59, Method: Composition-based stats. Identities = 71/178 (39%), Positives = 115/178 (64%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 ++ M ++ ++ ++T+RTGR +P+M + + E YG P+ Q+A ++V EPRML++ Sbjct: 8 EAEEHMTASVEHTREQLVTIRTGRANPTMFNGLVAEYYGVPTPITQMATISVPEPRMLLI 67 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 +++ M+ +E I S+LG+NP +GQVLR+ VP+ TEERR +VK+A + E KI+ Sbjct: 68 KPYEQSMIHEIENSIRNSDLGVNPTNDGQVLRVTVPQLTEERRKEMVKLAKSKGEDGKIA 127 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +RNIRR M+ LKK +K G A ED V + E +++KIT I+ +D E K+ E+M Sbjct: 128 IRNIRRKAMEQLKKLQKDGDAGEDEVIAAEKEMEKITSGYIEQVDKLVENKENELMEV 185 >gi|313115645|ref|ZP_07801101.1| ribosome recycling factor [Faecalibacterium cf. prausnitzii KLE1255] gi|310622031|gb|EFQ05530.1| ribosome recycling factor [Faecalibacterium cf. prausnitzii KLE1255] Length = 184 Score = 230 bits (587), Expect = 8e-59, Method: Composition-based stats. Identities = 72/181 (39%), Positives = 117/181 (64%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 + + +D+M ++ L +++ +R GR +P++LD V V+ YG+ P+ QVA+V V E R Sbjct: 4 NTKVYEDKMKSSVEHLGRELGAVRAGRANPAVLDKVSVDYYGAPTPIQQVASVAVAEART 63 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 L ++ WD+ ++ + + I S++G+ PI +G +R+ P TEERR L K E++ Sbjct: 64 LTITPWDRTLLRPISKAIMASDVGITPIDDGSTIRLNFPAPTEERRKQLAKEVSKLGEEA 123 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 K++VRNIRR+ MD K +K+G+ +ED ++E D+QK+TD IKNID+ EEK+KEIM Sbjct: 124 KVAVRNIRREAMDKAKAMKKAGELTEDSQKTMEEDVQKLTDKYIKNIDAAVEEKQKEIMS 183 Query: 186 F 186 Sbjct: 184 V 184 >gi|313896240|ref|ZP_07829793.1| ribosome recycling factor [Selenomonas sp. oral taxon 137 str. F0430] gi|320529259|ref|ZP_08030351.1| ribosome recycling factor [Selenomonas artemidis F0399] gi|312975039|gb|EFR40501.1| ribosome recycling factor [Selenomonas sp. oral taxon 137 str. F0430] gi|320138889|gb|EFW30779.1| ribosome recycling factor [Selenomonas artemidis F0399] Length = 185 Score = 230 bits (587), Expect = 8e-59, Method: Composition-based stats. Identities = 65/180 (36%), Positives = 110/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + M I L+++ +LR GR +P++LD V V YG+ +NQ+A VTV EP M+ Sbjct: 6 LSKHETSMTKAIESLRREFSSLRAGRATPNLLDKVMVPYYGTPTSVNQLAKVTVPEPHMI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V++ W+K ++ +E I +S+LGL+P +G V+R+ +P+ T+ERR L+K E++K Sbjct: 66 VITPWEKSVLHDIEIAISKSDLGLSPNSDGNVIRLAIPQPTQERRKELIKTVGKKTEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD + +KK K + +ED + +QK+ D +K ++ K+KE+M Sbjct: 126 VALRNIRRDANEAIKKLEKDKEINEDESKRGQESVQKLVDKFVKQMEEMRAAKEKEVMEI 185 >gi|226497262|ref|NP_001150478.1| ribosome recycling factor [Zea mays] gi|195639534|gb|ACG39235.1| ribosome recycling factor [Zea mays] Length = 264 Score = 230 bits (587), Expect = 8e-59, Method: Composition-based stats. Identities = 66/179 (36%), Positives = 107/179 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 K++M I ++ + T+RTGR +P+MLD ++VE YG+ V L +A ++ + L+ Sbjct: 86 DQAKEKMEKAIETVQANFNTVRTGRANPAMLDRIEVEYYGTPVNLKSIAQISTPDATSLL 145 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +DK + +E+ I +NLG+ P +G+V+R+ VP T +RR L K AE K+ Sbjct: 146 IQPYDKSSLKLIEKTIVAANLGVTPSNDGEVIRVTVPPLTSDRRKELSKTVAKLAEDGKV 205 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD + K K K SED V L D+QK+TD +K I+S ++K++E+M Sbjct: 206 AIRNIRRDAIKAYDKLEKEKKLSEDNVKDLSADLQKVTDEYMKKIESIQKQKEQELMKI 264 >gi|193215251|ref|YP_001996450.1| ribosome recycling factor [Chloroherpeton thalassium ATCC 35110] gi|193088728|gb|ACF14003.1| ribosome recycling factor [Chloroherpeton thalassium ATCC 35110] Length = 187 Score = 230 bits (587), Expect = 8e-59, Method: Composition-based stats. Identities = 83/180 (46%), Positives = 111/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + + RM +I ++ + +RTG+ S +LD +KVEAYG +PL QV NV L+ R L Sbjct: 8 LSDAESRMQKSIENVRHEFAAIRTGKASAGLLDGIKVEAYGQAMPLKQVGNVGTLDSRTL 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V VWDK MVA+VE+ I +SNLGLNP +GQ +RIPVP TEERR VKV AE+ K Sbjct: 68 TVQVWDKGMVATVEKAIRDSNLGLNPATDGQTIRIPVPPLTEERRKEYVKVTKKQAEEGK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD + K K +ED A + DI +T K++D +K+KEIM Sbjct: 128 VAVRNIRRDANHAIDKLEKEKLITEDEKARAKKDIDNLTHKYEKSLDELTSKKEKEIMEV 187 >gi|319638835|ref|ZP_07993593.1| ribosome-recycling factor [Neisseria mucosa C102] gi|317399739|gb|EFV80402.1| ribosome-recycling factor [Neisseria mucosa C102] Length = 185 Score = 230 bits (587), Expect = 8e-59, Method: Composition-based stats. Identities = 73/179 (40%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + + +M ++ LK+++ +RTGR +LD V+VE +GS VP++QVANVT+L+ R + Sbjct: 7 KTAEGKMQRSLEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVANVTLLDARTIG 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V ++ M + VE+ I +SNLGLNP G ++R+P+P TEERR L+KV AE+ ++ Sbjct: 67 VKPFESNMASKVEKAIRDSNLGLNPASVGDLIRVPMPMLTEERRKDLIKVVRGEAEEGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RN+RRD DH+KK K + SED E +QK+TD I D K++++M Sbjct: 127 SIRNVRRDANDHIKKLLKDKEISEDEARRGEEAVQKLTDKYIAEADKLLAAKEEDLMAI 185 >gi|238022655|ref|ZP_04603081.1| hypothetical protein GCWU000324_02564 [Kingella oralis ATCC 51147] gi|237865858|gb|EEP66994.1| hypothetical protein GCWU000324_02564 [Kingella oralis ATCC 51147] Length = 185 Score = 230 bits (587), Expect = 8e-59, Method: Composition-based stats. Identities = 77/179 (43%), Positives = 117/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + +M ++ LK+++ +RTGR +LD V+V+ YGS VP++QVANVT+L+ R + Sbjct: 7 KSAESKMQRSLEVLKENLAKVRTGRAHTGLLDQVEVDYYGSAVPVSQVANVTLLDARTIG 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V V++ M A+VE+ I +SNLGLNP G V+R+P+P TEERR L+KV + AE ++ Sbjct: 67 VKVYESNMAAAVEKAIRDSNLGLNPAAMGDVIRVPMPMLTEERRKDLIKVVRSEAEDGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RN+RRD DH+KK K + SED E IQK+TD I +D K++++M Sbjct: 127 SIRNVRRDANDHIKKLLKDKEISEDEARRGEEAIQKLTDKAIAEVDKILAAKEEDLMAI 185 >gi|126736320|ref|ZP_01752062.1| ribosome recycling factor [Roseobacter sp. CCS2] gi|126714141|gb|EBA11010.1| ribosome recycling factor [Roseobacter sp. CCS2] Length = 187 Score = 230 bits (587), Expect = 8e-59, Method: Composition-based stats. Identities = 85/182 (46%), Positives = 122/182 (67%), Gaps = 1/182 (0%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 +D ++ RM I+ L+ ++ +LRTGR S SML+ V V+AYGS P+NQV V V EPR Sbjct: 7 LDTDDLTRRMEGAIANLRVELASLRTGRASGSMLEPVMVDAYGSMTPINQVGTVNVPEPR 66 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ ++VWDK +V VE+ I ES LG+NP + G ++ +P+PE EERR L KVA Y E Sbjct: 67 MVTINVWDKGLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRRELTKVAGQYGES 126 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++S+RN+RRDGMD +KK++ G SED E+ +Q++TD+ IK +D E K+ EIM Sbjct: 127 ARVSIRNLRRDGMDKIKKAKTDG-LSEDDQKFWESTVQEVTDAHIKIVDETIESKQAEIM 185 Query: 185 HF 186 Sbjct: 186 QV 187 >gi|307330053|ref|ZP_07609204.1| ribosome recycling factor [Streptomyces violaceusniger Tu 4113] gi|306884314|gb|EFN15349.1| ribosome recycling factor [Streptomyces violaceusniger Tu 4113] Length = 185 Score = 230 bits (587), Expect = 8e-59, Method: Composition-based stats. Identities = 61/180 (33%), Positives = 105/180 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K+D +RTGR P+M + + + YG+ P+NQ+A+ +V EPRM Sbjct: 6 LLEAEEKMEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMA 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV+ +DK + ++E+ I +S+LG+NP +G ++R+ PE TE+RR +KVA A E +K Sbjct: 66 VVTPFDKTALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEQRRKEFIKVAKAKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 IS+R++RR + + K K G ED E ++ T + +D + K+ E++ Sbjct: 126 ISIRSVRRKAKESIDKLIKDGDVGEDEGRRAEKELDDTTAKYVAQVDELLKHKEAELLEV 185 >gi|262202045|ref|YP_003273253.1| ribosome recycling factor [Gordonia bronchialis DSM 43247] gi|262085392|gb|ACY21360.1| ribosome recycling factor [Gordonia bronchialis DSM 43247] Length = 185 Score = 230 bits (587), Expect = 8e-59, Method: Composition-based stats. Identities = 68/180 (37%), Positives = 112/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++M +S K DM ++RTGR +P+M + V +E YG+ P+ QVA++ EPR++ Sbjct: 6 LFDAEEKMEKAVSVAKDDMGSIRTGRANPAMFNKVVIEYYGAMTPVTQVASINTPEPRLV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ ++ + +E I S+LG+NP +G V+R+ VP+ TEERR LVK A E +K Sbjct: 66 VIKPYEASTLRDIETAIRNSDLGVNPTNDGNVIRVAVPQLTEERRRDLVKQAKGKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+RNIRR +D LK+ +K G+A ED V E ++ K T ++ +D + K+ E++ Sbjct: 126 VSIRNIRRKAVDELKRIQKDGEAGEDEVTRAEKELDKTTAGYVQQVDELVKHKENELLEV 185 >gi|282898680|ref|ZP_06306668.1| Ribosome recycling factor [Cylindrospermopsis raciborskii CS-505] gi|281196548|gb|EFA71457.1| Ribosome recycling factor [Cylindrospermopsis raciborskii CS-505] Length = 182 Score = 230 bits (587), Expect = 9e-59, Method: Composition-based stats. Identities = 64/177 (36%), Positives = 106/177 (59%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + M T+ ++ ++RTGR + S+LD V+V+ YGS L +AN+T + + Sbjct: 3 LAEAESTMNKTVEATQRAFNSIRTGRANASLLDKVQVDYYGSPTSLKSLANITTPDATTI 62 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D+ + VE+ I S++GL P +G V+R+ +P T +RR LVK+A YAE+ + Sbjct: 63 LIQPYDRTSLNIVEKAISLSDVGLTPSNDGSVIRLNIPPLTSDRRKELVKLAAKYAEEGR 122 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 + +RNIRRD +D ++K K+G+ SED ++ +QKIT ID EK+K+I Sbjct: 123 VGIRNIRRDALDSIRKQEKAGEVSEDESRDQQDKLQKITSKYTAKIDELLAEKEKDI 179 >gi|330720188|gb|EGG98575.1| Ribosome recycling factor [gamma proteobacterium IMCC2047] Length = 185 Score = 230 bits (587), Expect = 9e-59, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 111/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM + L +RTGR S+LD V V YGS PLNQVAN++V + R L+ Sbjct: 7 KDAEQRMEKALVALGAAFNRIRTGRAHASILDSVSVTYYGSETPLNQVANISVDDGRTLM 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S W+K M+ VE+ I +SNLGLNP+ G ++RIP+P TEE R LVK A A AE++++ Sbjct: 67 ISPWEKPMIPEVEKAILKSNLGLNPVTTGDIIRIPMPALTEETRKDLVKQAKAEAEQARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVR++RRD +K+ +K + SED ++IQKITD I I+ F K+ ++ Sbjct: 127 SVRSVRRDANSDIKELQKEKEISEDEERKASDEIQKITDKYIAKIEEAFTAKEADLKEI 185 >gi|261379562|ref|ZP_05984135.1| ribosome recycling factor [Neisseria subflava NJ9703] gi|284798036|gb|EFC53383.1| ribosome recycling factor [Neisseria subflava NJ9703] Length = 185 Score = 230 bits (587), Expect = 9e-59, Method: Composition-based stats. Identities = 73/179 (40%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + + +M ++ LK ++ +RTGR +LD V+VE +GS VP++QVANVT+L+ R + Sbjct: 7 KTAEGKMQRSLEVLKDNLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVANVTLLDARTIG 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V ++ M + VE+ I +SNLGLNP G ++R+P+P TEERR L+KV + AE+ ++ Sbjct: 67 VKPFESNMASKVEKAIRDSNLGLNPASVGDLIRVPMPMLTEERRKDLIKVVRSEAEEGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RN+RRD DH+KK K + SED E +QK+TD I D K++++M Sbjct: 127 SIRNVRRDANDHIKKLLKDKEISEDEARRGEEAVQKLTDKYIAEADKLLAAKEEDLMAI 185 >gi|89900777|ref|YP_523248.1| ribosome recycling factor [Rhodoferax ferrireducens T118] gi|122479258|sp|Q21WY6|RRF_RHOFD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|89345514|gb|ABD69717.1| ribosome recycling factor [Rhodoferax ferrireducens T118] Length = 186 Score = 230 bits (587), Expect = 9e-59, Method: Composition-based stats. Identities = 72/179 (40%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ +M +I K ++ +RTGR +P++LD V V+ YG+ +P++QVANV++L+ R + Sbjct: 8 NTVEGKMDQSIEAFKHNLTKIRTGRANPALLDTVHVDYYGAMLPISQVANVSLLDARTIS 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K M A +E+ I +S+LGLNP G ++R+P+P +EERR L KV E +KI Sbjct: 68 VQPWEKGMGAKIEKAIRDSDLGLNPSSMGDLIRVPMPAMSEERRKELSKVVRGEGEGAKI 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD + ++K+ K ASED E DIQK+TD + ID K+++IM Sbjct: 128 AIRNLRRDANEAIRKAVKDKLASEDEQKRCETDIQKVTDRHVIVIDQLVAAKEQDIMAV 186 >gi|328946695|gb|EGG40833.1| ribosome recycling factor [Streptococcus sanguinis SK1087] Length = 185 Score = 230 bits (587), Expect = 9e-59, Method: Composition-based stats. Identities = 71/180 (39%), Positives = 115/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+RM + L ++ ++R GR + S+LD + VE YG PLNQ+A++T+ E R+L Sbjct: 6 VEKAKERMTHSHQSLAREFGSIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + +ER ++ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LVTPFDKSSIKDIERALNASDLGITPASDGSVIRLVIPALTEETRRDLAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD MD KK K+ + +ED + +LE DIQK+TD +K+ID K+KE++ Sbjct: 126 VAIRNIRRDAMDDAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDEMTANKEKELLEV 185 >gi|291459117|ref|ZP_06598507.1| ribosome recycling factor [Oribacterium sp. oral taxon 078 str. F0262] gi|291418371|gb|EFE92090.1| ribosome recycling factor [Oribacterium sp. oral taxon 078 str. F0262] Length = 184 Score = 229 bits (586), Expect = 9e-59, Method: Composition-based stats. Identities = 72/175 (41%), Positives = 107/175 (61%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 ++M T L ++ T+R GR +P +LD + V+ YG+ PL QV N++V E RML + W Sbjct: 10 EKMHKTHDNLMSELATIRAGRANPHVLDRITVDYYGTQTPLQQVGNISVPEARMLQIQPW 69 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 DK M+ +E+ I+ S+LG+NP +G +R+ PE TEERR L K E +K+++RN Sbjct: 70 DKGMLKEIEKAINLSDLGINPTNDGNTIRLVFPELTEERRRELTKEVKKKGEAAKVAIRN 129 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 IRRD M+ KK K+ + +ED ++ DIQ +TD I+ ID E K KE+M Sbjct: 130 IRRDAMELAKKLEKNSEITEDDLSRQTKDIQDLTDHMIEKIDRSVEAKNKELMTV 184 >gi|224368820|ref|YP_002602981.1| ribosome recycling factor [Desulfobacterium autotrophicum HRM2] gi|259494538|sp|C0QB20|RRF_DESAH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|223691536|gb|ACN14819.1| Frr [Desulfobacterium autotrophicum HRM2] Length = 185 Score = 229 bits (586), Expect = 9e-59, Method: Composition-based stats. Identities = 77/179 (43%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + +DRM ++ L+K+M +RTGR S +MLD VKV+ YG+ PLNQ+A++ + E RM+ Sbjct: 7 KETRDRMVKSVKTLEKEMTRVRTGRASMTMLDGVKVDYYGTLTPLNQMASIAIPESRMIT 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V WD + VE+GI ++N+GL P +G+++RI +P TE+RR + K H E+ K+ Sbjct: 67 VQPWDISAIKEVEKGILKANIGLTPSSDGKIIRITIPPLTEDRRREIAKTVHNTCEEFKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD D LK +K G SED + ++Q ITD IK I++ F K+KEI+ Sbjct: 127 AVRNIRRDSNDTLKSLQKDGDISEDENFKAQKEVQDITDEFIKQIEAVFAAKEKEILEL 185 >gi|15895066|ref|NP_348415.1| ribosome recycling factor [Clostridium acetobutylicum ATCC 824] gi|22001946|sp|Q97I63|RRF_CLOAB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|15024762|gb|AAK79755.1|AE007688_4 Ribosome recycling factor [Clostridium acetobutylicum ATCC 824] gi|325509204|gb|ADZ20840.1| ribosome recycling factor [Clostridium acetobutylicum EA 2018] Length = 185 Score = 229 bits (586), Expect = 9e-59, Method: Composition-based stats. Identities = 78/180 (43%), Positives = 120/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ ++++M +IS LKK++ +++ GR +P+MLD ++V+ YG+ PLNQ+AN++V E R+L Sbjct: 6 IKELEEKMTKSISALKKELTSMKAGRANPAMLDRIEVDYYGTMTPLNQLANISVPESRVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WDK + S+E+ I S+LGLNP +G +R+ +PE TEE R +VK E K Sbjct: 66 MIQPWDKSAMKSIEKAILISDLGLNPSNDGTTMRLVIPELTEETRKNIVKNVKKAGEDGK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++R IRRD D +K +K +ED + S ENDIQK TDS +K ID E K+KEIM Sbjct: 126 VALRAIRRDANDKVKSLKKDNSITEDEMKSAENDIQKKTDSYVKEIDKMVEAKEKEIMSI 185 >gi|322388009|ref|ZP_08061616.1| ribosome recycling factor [Streptococcus infantis ATCC 700779] gi|321141282|gb|EFX36780.1| ribosome recycling factor [Streptococcus infantis ATCC 700779] Length = 185 Score = 229 bits (586), Expect = 9e-59, Method: Composition-based stats. Identities = 71/180 (39%), Positives = 114/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+RM + L ++ ++R GR + S+LD + VE YG PLNQ+A++T+ E R+L Sbjct: 6 VEKAKERMTQSHHSLSREFGSIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + +ER ++ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LVTPFDKTSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD MD KK K+ + +ED + +LE DIQK TD +K+ID K+KE++ Sbjct: 126 VAIRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKATDDAVKHIDDMTANKEKELLEV 185 >gi|116495065|ref|YP_806799.1| ribosome recycling factor [Lactobacillus casei ATCC 334] gi|191638568|ref|YP_001987734.1| ribosome recycling factor [Lactobacillus casei BL23] gi|227534923|ref|ZP_03964972.1| ribosome recycling factor [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|122263518|sp|Q038L5|RRF_LACC3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238693049|sp|B3WES5|RRF_LACCB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|116105215|gb|ABJ70357.1| ribosome recycling factor [Lactobacillus casei ATCC 334] gi|190712870|emb|CAQ66876.1| Ribosome recycling factor (Ribosome-releasing factor) (RRF) [Lactobacillus casei BL23] gi|227187679|gb|EEI67746.1| ribosome recycling factor [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|327382607|gb|AEA54083.1| Ribosome recycling factor, RRF [Lactobacillus casei LC2W] gi|327385804|gb|AEA57278.1| Ribosome recycling factor, RRF [Lactobacillus casei BD-II] Length = 185 Score = 229 bits (586), Expect = 9e-59, Method: Composition-based stats. Identities = 78/185 (42%), Positives = 118/185 (63%), Gaps = 2/185 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 NQ+ID K MG T L++++ +R GR + S+L+ + VE YG+ PLNQ+A +T+ Sbjct: 3 NQIID--QAKVNMGKTEESLQRELGNIRAGRANASLLNQITVEYYGAPTPLNQMAAITIP 60 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 EPR+L VS +DK + ++E ++ S+LG+NP +G V+R+ +P+ T ERR + K Y Sbjct: 61 EPRVLQVSPYDKSSLKNIETALNASDLGINPANDGDVIRLVIPQLTGERRKEIAKEVGKY 120 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 +E +KI++RNIRR+G+D LK+ K G +ED + LE D+QK TD K ID K+K Sbjct: 121 SESAKIAIRNIRREGLDKLKRQEKDGDITEDDLHRLEKDMQKATDDATKRIDEIAAAKEK 180 Query: 182 EIMHF 186 EI Sbjct: 181 EITEV 185 >gi|262283030|ref|ZP_06060797.1| ribosome-recycling factor [Streptococcus sp. 2_1_36FAA] gi|262261282|gb|EEY79981.1| ribosome-recycling factor [Streptococcus sp. 2_1_36FAA] Length = 185 Score = 229 bits (586), Expect = 9e-59, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 114/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+RM + L ++ +R GR + S+LD + VE YG PLNQ+A++T+ E R+L Sbjct: 6 VEKAKERMSHSHQSLAREFGAVRAGRANASLLDRISVEYYGVETPLNQIASITIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + +ER I+ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LVTPFDKSSLKDIERAINASDLGITPASDGSVIRLVIPALTEETRRDLAKEVKKIGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIRRD MD KK K+ + +ED + +LE DIQK+TD +K+ID K+KE++ Sbjct: 126 IAIRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDEMTAHKEKELLEV 185 >gi|332670031|ref|YP_004453039.1| ribosome recycling factor [Cellulomonas fimi ATCC 484] gi|332339069|gb|AEE45652.1| ribosome recycling factor [Cellulomonas fimi ATCC 484] Length = 185 Score = 229 bits (586), Expect = 9e-59, Method: Composition-based stats. Identities = 65/180 (36%), Positives = 107/180 (59%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K D T+RTGR + +M V V+ YGS PL Q+A+ V E R + Sbjct: 6 LLEAEEKMDKAVEVAKDDFATIRTGRANAAMFSKVFVDYYGSPTPLQQLASFNVTEARTI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +VS +DK ++E+ + +S+LG+NP +G V+R+ +P TEERR VK+A A AE ++ Sbjct: 66 LVSPFDKSSTTAIEKALRDSDLGVNPTNDGNVIRVVLPALTEERRRDFVKLAKAKAEDAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +SVR++RR + L + K G+A ED V E +++ +T ++ ID K+ E++ Sbjct: 126 VSVRSVRRKAKEELDRIVKDGEAGEDEVVRAEKELEALTKKHVETIDHLLASKESELLEV 185 >gi|304384860|ref|ZP_07367206.1| ribosome recycling factor [Pediococcus acidilactici DSM 20284] gi|304329054|gb|EFL96274.1| ribosome recycling factor [Pediococcus acidilactici DSM 20284] Length = 186 Score = 229 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 65/184 (35%), Positives = 119/184 (64%), Gaps = 2/184 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 N++ L+ +++M L++D+ ++R GR + S+LD V V+ YG+ PLNQ+A++++ Sbjct: 4 NEI--LKTAEEKMHKAHQALERDLGSIRAGRANASLLDRVTVDYYGAPTPLNQMASISIP 61 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 EPR+L+++ +DK ++ +E+ + ++LG+NP +G +R+ +P+ TEE R L K A Sbjct: 62 EPRVLLITPYDKSVLNDIEQALLVADLGINPANDGSAIRLVIPQLTEETRKELAKDVKAE 121 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 EK K+++RN+RR+ M+ LKK+ K+G ++D LE Q ITD I+ ++ K+K Sbjct: 122 GEKGKVAIRNVRREAMEALKKAHKNGDYNDDEFHDLEKQAQDITDKAIRKVEEIVANKEK 181 Query: 182 EIMH 185 E++ Sbjct: 182 EVLE 185 >gi|238926718|ref|ZP_04658478.1| peptide chain release factor RF4 [Selenomonas flueggei ATCC 43531] gi|238885250|gb|EEQ48888.1| peptide chain release factor RF4 [Selenomonas flueggei ATCC 43531] Length = 185 Score = 229 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 66/180 (36%), Positives = 112/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++ M I L+++ +LR GR +P++LD V V YG+ +NQ+A VTV EP M+ Sbjct: 6 LSKHEENMNKAIDVLRREFSSLRAGRATPNLLDKVMVPYYGTPTSVNQLAKVTVPEPHMI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V++ W+K ++ +E I +S+LGL+P +G V+R+ +P+ T+ERR L+K E++K Sbjct: 66 VITPWEKAILHEIEIAISKSDLGLSPNSDGNVIRLAIPQPTQERRKELIKTVGKKTEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD + +KK K + +ED ++ +QK+ D +K +D K+KE+M Sbjct: 126 VALRNIRRDANEAIKKLEKDKEINEDESKRGQDSVQKLVDKFVKQMDEMRTAKEKEVMEI 185 >gi|227833383|ref|YP_002835090.1| Ribosome recycling factor [Corynebacterium aurimucosum ATCC 700975] gi|262184370|ref|ZP_06043791.1| ribosome recycling factor [Corynebacterium aurimucosum ATCC 700975] gi|254809506|sp|C3PH48|RRF_CORA7 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|227454399|gb|ACP33152.1| Ribosome recycling factor [Corynebacterium aurimucosum ATCC 700975] Length = 185 Score = 229 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 68/178 (38%), Positives = 115/178 (64%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 ++ M ++ ++ ++T+RTGR +P+M + + E YG P+ Q+A ++V EPRML++ Sbjct: 8 EAEEHMTASVEHTREQLLTIRTGRANPAMFNGLVAEYYGVPTPITQMATISVPEPRMLLI 67 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 +++ ++ +E I S+LG+NP +GQVLR+ +P+ TEERR +VK+A + E KI+ Sbjct: 68 KPYEQSVMNEIENAIRNSDLGVNPTNDGQVLRVTIPQLTEERRRDMVKMAKSKGEDGKIA 127 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +RNIRR M+ LKK +K G A ED V + E +++KIT I+ +D K++E+M Sbjct: 128 IRNIRRRAMEQLKKLQKDGDAGEDEVIAAEKEMEKITSGYIEQVDKLVANKEEELMEV 185 >gi|168483015|ref|ZP_02707967.1| ribosome recycling factor [Streptococcus pneumoniae CDC1873-00] gi|172043555|gb|EDT51601.1| ribosome recycling factor [Streptococcus pneumoniae CDC1873-00] gi|332201410|gb|EGJ15480.1| ribosome recycling factor [Streptococcus pneumoniae GA47368] Length = 185 Score = 229 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 76/186 (40%), Positives = 116/186 (62%), Gaps = 1/186 (0%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M VI ++ K+RM + L ++ +R GR + S+LD V VE YG PLNQ+A++T+ Sbjct: 1 MANVI-IEKAKERMTQSHQSLAREFGGIRAGRANASLLDRVHVEYYGVETPLNQIASITI 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R+L+V+ +DK + +ER ++ S LG+ P +G V+R+ +P TEE R L K Sbjct: 60 PEARVLLVTPFDKSSLKDIERALNASELGITPANDGSVIRLVIPALTEETRRDLAKEVKK 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E +K++VRNIRRD MD KK K+ + +ED + +LE DIQK+TD +K+ID K+ Sbjct: 120 VGENAKVAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKE 179 Query: 181 KEIMHF 186 KE++ Sbjct: 180 KELLEV 185 >gi|37519857|ref|NP_923234.1| ribosome recycling factor [Gloeobacter violaceus PCC 7421] gi|39932053|sp|Q7NNX0|RRF_GLOVI RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|35210848|dbj|BAC88229.1| ribosome releasing factor [Gloeobacter violaceus PCC 7421] Length = 182 Score = 229 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 67/179 (37%), Positives = 107/179 (59%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 +++ + M I + T+RTGR S S+LD + VE YG PL +A +T + Sbjct: 1 MNVSKTEQDMRKAIEATAGNFATIRTGRASTSLLDRINVEYYGQPTPLKTLATITTPDAS 60 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 +++ +D + +E+ I ES+LGL P +G+ +R+ +P T ERR LVKV AE+ Sbjct: 61 TVLIQPYDPSSLRLIEKTILESDLGLPPSNDGKTIRLNIPPLTAERRKDLVKVLRNLAEE 120 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +++VRNIRR +D ++K K K SED L++++QK+TD +I+ I+ FE K+KEI Sbjct: 121 GRVAVRNIRRHAIDEVRKEEKDAKVSEDEARRLQDEVQKLTDKSIQQIEKLFEAKEKEI 179 >gi|327470583|gb|EGF16039.1| ribosome recycling factor [Streptococcus sanguinis SK330] Length = 185 Score = 229 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 71/180 (39%), Positives = 115/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+RM + L ++ ++R GR + S+LD + VE YG PLNQ+A++T+ E R+L Sbjct: 6 VEKAKERMTHSHQSLAREFGSIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + +ER ++ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LVTPFDKSSIKDIERALNASDLGITPASDGSVIRLVIPALTEETRRDLAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD MD KK K+ + +ED + +LE DIQK+TD +K+ID K+KE++ Sbjct: 126 VAIRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDEMTANKEKELLEV 185 >gi|158338603|ref|YP_001519780.1| ribosome recycling factor [Acaryochloris marina MBIC11017] gi|158308844|gb|ABW30461.1| ribosome recycling factor [Acaryochloris marina MBIC11017] Length = 173 Score = 229 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 64/170 (37%), Positives = 100/170 (58%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M +I +K+ + T+RTGR + S+LD + VE YG+ PL +A ++ + + + +D Sbjct: 1 MQKSIEAMKRSLNTIRTGRANASLLDRITVEYYGTETPLRSLATISTPDASTITIQPFDP 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 + +ER I S++GL P +G +R+ +P TEERR VK+A AE+ K+++RNIR Sbjct: 61 SSLTDIERSISLSDVGLVPNNDGSAIRLNIPPLTEERRKDFVKMAGKIAEEGKVAIRNIR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 RD +D +K KSG SED L++ IQ +TD +D EK+ EI Sbjct: 121 RDAIDTARKQGKSGDISEDESKDLQDKIQGLTDKYTGQVDKILAEKETEI 170 >gi|125718424|ref|YP_001035557.1| ribosome recycling factor [Streptococcus sanguinis SK36] gi|323351162|ref|ZP_08086818.1| ribosome recycling factor [Streptococcus sanguinis VMC66] gi|166231520|sp|A3CPA2|RRF_STRSV RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|125498341|gb|ABN45007.1| Ribosome recycling factor, putative [Streptococcus sanguinis SK36] gi|322122386|gb|EFX94097.1| ribosome recycling factor [Streptococcus sanguinis VMC66] gi|324991441|gb|EGC23374.1| ribosome recycling factor [Streptococcus sanguinis SK353] gi|324993795|gb|EGC25714.1| ribosome recycling factor [Streptococcus sanguinis SK405] gi|324994886|gb|EGC26799.1| ribosome recycling factor [Streptococcus sanguinis SK678] gi|325687319|gb|EGD29341.1| ribosome recycling factor [Streptococcus sanguinis SK72] gi|325690743|gb|EGD32744.1| ribosome recycling factor [Streptococcus sanguinis SK115] gi|325694795|gb|EGD36700.1| ribosome recycling factor [Streptococcus sanguinis SK150] gi|325696189|gb|EGD38080.1| ribosome recycling factor [Streptococcus sanguinis SK160] gi|327460953|gb|EGF07286.1| ribosome recycling factor [Streptococcus sanguinis SK1057] gi|327463069|gb|EGF09390.1| ribosome recycling factor [Streptococcus sanguinis SK1] gi|327474670|gb|EGF20075.1| ribosome recycling factor [Streptococcus sanguinis SK408] gi|327490228|gb|EGF22016.1| ribosome recycling factor [Streptococcus sanguinis SK1058] gi|332358733|gb|EGJ36556.1| ribosome recycling factor [Streptococcus sanguinis SK355] gi|332359004|gb|EGJ36825.1| ribosome recycling factor [Streptococcus sanguinis SK49] gi|332367318|gb|EGJ45053.1| ribosome recycling factor [Streptococcus sanguinis SK1059] Length = 185 Score = 229 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 71/180 (39%), Positives = 115/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+RM + L ++ ++R GR + S+LD + VE YG PLNQ+A++T+ E R+L Sbjct: 6 VEKAKERMTHSHQSLAREFGSIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + +ER ++ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LVTPFDKSSIKDIERALNASDLGITPASDGSVIRLVIPALTEETRRDLAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD MD KK K+ + +ED + +LE DIQK+TD +K+ID K+KE++ Sbjct: 126 VAIRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDEMTANKEKELLEV 185 >gi|186686172|ref|YP_001869368.1| ribosome recycling factor [Nostoc punctiforme PCC 73102] gi|238691203|sp|B2IVW4|RRF_NOSP7 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|186468624|gb|ACC84425.1| ribosome recycling factor [Nostoc punctiforme PCC 73102] Length = 182 Score = 229 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 59/177 (33%), Positives = 110/177 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + K +M ++ ++ T+RTGR + S+LD V V+ YGS PL +AN++ + + Sbjct: 3 LADAKSKMQSSVESTQRAFNTIRTGRANASLLDKVLVDYYGSPTPLKSLANISTPDASTI 62 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +++ + +E+ I S++GL P +G V+R+ +P T +RR VK+A YAE+ + Sbjct: 63 LIQPYERNTLNIIEKAISLSDVGLTPSNDGSVIRLNIPPLTSDRRKEFVKMATKYAEEGR 122 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +++RNIRRD +D ++K K+ + S+D ++++QK+T+ ID+ EK+K+I Sbjct: 123 VAIRNIRRDAIDSIRKQEKASEISKDESKDQQDNLQKLTNEYTSRIDALLAEKEKDI 179 >gi|297191773|ref|ZP_06909171.1| ribosome recycling factor [Streptomyces pristinaespiralis ATCC 25486] gi|197721709|gb|EDY65617.1| ribosome recycling factor [Streptomyces pristinaespiralis ATCC 25486] Length = 185 Score = 229 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 60/180 (33%), Positives = 105/180 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K D +RTGR P+M + + + YG+ P+NQ+A+ +V EPRM Sbjct: 6 LLEAEEKMEKAVLVAKDDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMA 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV+ +DK + ++E+ I +S+LG+NP +G ++R+ PE T++RR +KVA AE +K Sbjct: 66 VVTPFDKTALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTQDRRKEYIKVAKTKAEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 IS+R++RR + + K K G+ ED E ++ T + +D + K+ E++ Sbjct: 126 ISIRSVRRKAKETIDKLIKDGEVGEDEGRRAEKELDDTTAKYVAQVDELLKHKEAELLEV 185 >gi|332523063|ref|ZP_08399315.1| ribosome recycling factor [Streptococcus porcinus str. Jelinkova 176] gi|332314327|gb|EGJ27312.1| ribosome recycling factor [Streptococcus porcinus str. Jelinkova 176] Length = 185 Score = 229 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 75/185 (40%), Positives = 115/185 (62%), Gaps = 2/185 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 N +ID R + L ++ ++R GR + S+LD ++V+ YG+ PLNQ++++TV Sbjct: 3 NAIID--KANQRFEQSFQSLSREYASIRAGRANASLLDRIQVDYYGAPTPLNQLSSITVP 60 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 E R+L++S +DK + +ER I+ S+LG+ P +G V+R+ +P TEE R L K Sbjct: 61 EARVLLISPFDKNSIKDIERAINASDLGITPANDGSVIRLVIPALTEETRKNLAKEVKKV 120 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 E K+++RNIRRD MD KK K + SED + +LE DIQK TD IK+ID+ EK+K Sbjct: 121 GENQKVAIRNIRRDAMDEAKKQEKDKEISEDELKTLEKDIQKATDDAIKHIDAMTAEKEK 180 Query: 182 EIMHF 186 E++ Sbjct: 181 ELLSV 185 >gi|255029475|ref|ZP_05301426.1| ribosome recycling factor [Listeria monocytogenes LO28] Length = 182 Score = 229 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 76/177 (42%), Positives = 120/177 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K++M L + + T+R GR + S+LD + V+ YG+ P+NQ+A+++V E RML Sbjct: 6 LSKSKEKMEKAEQALTRQLGTIRAGRANASLLDRLSVDYYGAATPVNQMASISVPEARML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK ++ +E+ I +S+LGL P +G VLR+ +P+ TEERR LVK AE++K Sbjct: 66 LITPYDKTILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 ++VRNIRR+ + LKK K+G +ED + S D+QK+TD +IKNIDS ++K+ EI Sbjct: 126 VAVRNIRREANEELKKLEKNGDITEDDLRSYGEDVQKLTDESIKNIDSITKDKEAEI 182 >gi|322411286|gb|EFY02194.1| ribosome recycling factor [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 185 Score = 229 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 115/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+R + L ++ ++R GR + S+LD ++++ YG+ PLNQ+A++TV E R+L Sbjct: 6 IETAKERFAQSHHSLSREYASIRAGRANASLLDRIQIDYYGAPTPLNQLASITVPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +DK + +ER ++ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LISPFDKSSIKDIERALNASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 IS+RNIRRD MD KK K+ + +ED + +LE DIQK TD IK ID EK+KE++ Sbjct: 126 ISIRNIRRDAMDDAKKQEKAKEITEDELKTLEKDIQKATDDAIKEIDRMTAEKEKELLSV 185 >gi|260575886|ref|ZP_05843881.1| ribosome recycling factor [Rhodobacter sp. SW2] gi|259021812|gb|EEW25113.1| ribosome recycling factor [Rhodobacter sp. SW2] Length = 188 Score = 229 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 84/182 (46%), Positives = 124/182 (68%), Gaps = 1/182 (0%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 IDL I+ RM + L+ + +LRTGR S S+L+ + V+AYG P+NQ+ V V EPR Sbjct: 8 IDLDAIQRRMDGALHALRTEFGSLRTGRASASILEPIHVDAYGQMTPINQLGTVNVPEPR 67 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+V++VWDK MV VER I +S +G+NP+V+G ++R+P+PE EERR L KVA YAE Sbjct: 68 MVVINVWDKAMVQKVERAIRDSGIGINPVVDGPLIRLPIPELNEERRAQLSKVAAHYAET 127 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++++RN+RRDGMD +KK++ +G +ED ++Q +TD I N+D E K++EIM Sbjct: 128 ARVAIRNVRRDGMDQIKKAKAAG-MAEDDQKMWSEEVQDLTDKAIANVDRTLELKQQEIM 186 Query: 185 HF 186 Sbjct: 187 QV 188 >gi|291550817|emb|CBL27079.1| ribosome recycling factor [Ruminococcus torques L2-14] Length = 183 Score = 229 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 76/186 (40%), Positives = 116/186 (62%), Gaps = 3/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 MN+ + + D+M TI+ L ++ T+R GR +P +LD + V+ YG+ P+ QVANV+V Sbjct: 1 MNEKNKIYD--DKMTKTINNLDGELATIRAGRANPHVLDKLAVDYYGTPTPIQQVANVSV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E RM+ + W+K M+ ++E+ I S++G+NP +G +R+ PE TE+RR L K Sbjct: 59 PEARMIQIQPWEKSMLKAIEKAILTSDIGINPTNDGTSIRLVFPELTEDRRKELAKDVKK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E++K++VRN+RRDG KK K + SED + LE+++QKITD + ID E K Sbjct: 119 KGEEAKVAVRNVRRDGNVAFKKL-KGTEISEDEIKDLEDELQKITDKYVAKIDKMVEAKS 177 Query: 181 KEIMHF 186 KEIM Sbjct: 178 KEIMTV 183 >gi|15900824|ref|NP_345428.1| ribosome recycling factor [Streptococcus pneumoniae TIGR4] gi|111658056|ref|ZP_01408758.1| hypothetical protein SpneT_02000789 [Streptococcus pneumoniae TIGR4] gi|182683889|ref|YP_001835636.1| ribosome releasing factor [Streptococcus pneumoniae CGSP14] gi|303254412|ref|ZP_07340518.1| ribosome recycling factor [Streptococcus pneumoniae BS455] gi|303259855|ref|ZP_07345830.1| ribosome releasing factor [Streptococcus pneumoniae SP-BS293] gi|303262269|ref|ZP_07348213.1| ribosome releasing factor [Streptococcus pneumoniae SP14-BS292] gi|303264691|ref|ZP_07350609.1| ribosome releasing factor [Streptococcus pneumoniae BS397] gi|303267220|ref|ZP_07353085.1| ribosome releasing factor [Streptococcus pneumoniae BS457] gi|303269506|ref|ZP_07355271.1| ribosome releasing factor [Streptococcus pneumoniae BS458] gi|22001947|sp|Q97R82|RRF_STRPN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238691154|sp|B2IPA0|RRF_STRPS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|14972420|gb|AAK75068.1| ribosome recycling factor [Streptococcus pneumoniae TIGR4] gi|182629223|gb|ACB90171.1| ribosome releasing factor [Streptococcus pneumoniae CGSP14] gi|302598579|gb|EFL65619.1| ribosome recycling factor [Streptococcus pneumoniae BS455] gi|302636592|gb|EFL67083.1| ribosome releasing factor [Streptococcus pneumoniae SP14-BS292] gi|302639060|gb|EFL69520.1| ribosome releasing factor [Streptococcus pneumoniae SP-BS293] gi|302640942|gb|EFL71324.1| ribosome releasing factor [Streptococcus pneumoniae BS458] gi|302643229|gb|EFL73511.1| ribosome releasing factor [Streptococcus pneumoniae BS457] gi|302645778|gb|EFL76007.1| ribosome releasing factor [Streptococcus pneumoniae BS397] Length = 185 Score = 229 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 72/180 (40%), Positives = 114/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+RM + L ++ +R GR + S+LD V VE YG PLNQ+A++T+ E R+L Sbjct: 6 IEKAKERMTQSHQSLAREFGGIRAGRANASLLDRVHVEYYGVETPLNQIASITIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + +ER ++ S++G+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LVTPFDKSSLKDIERALNASDIGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD MD KK K+ + +ED + +LE DIQK+TD +K+ID K+KE++ Sbjct: 126 VAVRNIRRDAMDEAKKREKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELLEV 185 >gi|226322655|ref|ZP_03798173.1| hypothetical protein COPCOM_00427 [Coprococcus comes ATCC 27758] gi|225208992|gb|EEG91346.1| hypothetical protein COPCOM_00427 [Coprococcus comes ATCC 27758] Length = 183 Score = 229 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 77/186 (41%), Positives = 119/186 (63%), Gaps = 3/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 MN+ + + + ++M TI L ++ ++R GR +P++L+ + VE YG+ P+ QVAN++V Sbjct: 1 MNEKLKIYD--EKMQKTIHALDTELASIRAGRANPNILNKLTVEYYGTPTPIQQVANISV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E RM+ + W+K+++ +E+ I S++G+NP +G V+R+ PE TEERR LVK Sbjct: 59 PEARMIQIQPWEKKIIKDIEKAILMSDIGINPTNDGTVIRLVFPELTEERRKELVKDVKK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E SK++VRNIRRDG D KK K SED + LE+ IQK+TD IK +D+ + K Sbjct: 119 KGEASKVAVRNIRRDGNDAFKKL-KGTDVSEDEIQDLEDQIQKLTDKYIKEVDAAVDAKS 177 Query: 181 KEIMHF 186 KE+M Sbjct: 178 KEVMTV 183 >gi|326693032|ref|ZP_08230037.1| ribosome recycling factor [Leuconostoc argentinum KCTC 3773] Length = 181 Score = 229 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 77/182 (42%), Positives = 121/182 (66%), Gaps = 3/182 (1%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D+ + K RM L++++ ++RTGR +P +LD ++VE YG+ PLNQVA+++V E R Sbjct: 3 FDITDAKARMQGAQDALQRELGSIRTGRANPRILDRIEVEYYGAMTPLNQVASISVPEAR 62 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 +L+++ +DK ++ + R I+ S+LGLNP +G ++R+ +P+ TEE R L K A AEK Sbjct: 63 ILLITPFDKSVLDEIIRAINMSDLGLNPASDGNIVRLAIPQMTEEGRKELAKQVKAEAEK 122 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +K+SVRN+RRD MD +K K + ED+ E+ IQK+TD IK ID+ EK+KE++ Sbjct: 123 AKVSVRNVRRDAMDSVK---KDKELPEDVARKAEDAIQKLTDDNIKAIDAIAAEKEKELL 179 Query: 185 HF 186 Sbjct: 180 TI 181 >gi|317125390|ref|YP_004099502.1| ribosome recycling factor [Intrasporangium calvum DSM 43043] gi|315589478|gb|ADU48775.1| ribosome recycling factor [Intrasporangium calvum DSM 43043] Length = 185 Score = 229 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 59/178 (33%), Positives = 102/178 (57%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 +++M + LK+D +RTGR +P + + + V YG+ PL Q+A+ EPR ++V Sbjct: 8 EAEEKMDKAVEVLKEDFAGIRTGRANPGLFNKLLVNYYGAPTPLQQLASFQNPEPRTILV 67 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 +DK + +E+ I +S+LG+NP +G +R +PE TE+RR +K+AH AE+ ++S Sbjct: 68 VPFDKSAMHEIEKAIRDSDLGVNPASDGHQIRCVMPELTEQRRKEYIKLAHHKAEEGRVS 127 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +RN+RR + + K G ED A E +++ +T IDS + K+ E++ Sbjct: 128 IRNVRRKAKTDIDRLVKDGDVGEDEGARAEKELEALTKKHTDLIDSLVKHKESELLEV 185 >gi|317969623|ref|ZP_07971013.1| ribosome recycling factor [Synechococcus sp. CB0205] Length = 179 Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats. Identities = 60/178 (33%), Positives = 107/178 (60%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 +++ M ++ ++ T+RTGR + S+LD ++VE YG+ PL +A ++ + + + Sbjct: 2 DLEASMRKSVDSTQRTFNTIRTGRANASLLDKIQVEYYGADTPLKSLATISTPDSSTIQL 61 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 +D + +E+ I S+LGL +G+++RI +P TE+RR L K+A YAE+ K++ Sbjct: 62 QPFDGSSLGLIEKAISMSDLGLTCNNDGKLIRINIPPLTEDRRKELCKLAAKYAEEGKVA 121 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +RN+RRD +D +KK K G+ SED ++ +QK+TD I I+ EK+ +I+ Sbjct: 122 LRNVRRDAIDKVKKQEKEGEFSEDQSRDEQDKVQKLTDKFIAEIEKLLAEKEADILKV 179 >gi|167756899|ref|ZP_02429026.1| hypothetical protein CLORAM_02448 [Clostridium ramosum DSM 1402] gi|167703074|gb|EDS17653.1| hypothetical protein CLORAM_02448 [Clostridium ramosum DSM 1402] Length = 193 Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats. Identities = 76/180 (42%), Positives = 116/180 (64%), Gaps = 4/180 (2%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +RM TI ++D+ ++RTGR +P+MLD V V YGS P+NQ+A ++V+E R L Sbjct: 18 LDDTNERMTKTIESFQRDLSSVRTGRANPNMLDRVMVNYYGSPTPVNQIAGISVVEGRQL 77 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +DK + +E GI+E++LGL P +G+++RI VP TEERR K +AE +K Sbjct: 78 VIKPYDKSSIKDIEHGIYEADLGLTPQNDGEIIRIMVPALTEERRKEFAKNVWKFAENAK 137 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+RNIRRD D +KK+ SED + + + +QK+TD +K ID + K+K+IM Sbjct: 138 VSIRNIRRDSNDEIKKT----DGSEDEIKAGQERVQKLTDKFVKEIDEIAKVKEKDIMTV 193 >gi|67459519|ref|YP_247143.1| ribosome recycling factor [Rickettsia felis URRWXCal2] gi|75536074|sp|Q4UKF3|RRF_RICFE RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|67005052|gb|AAY61978.1| Ribosome recycling factor [Rickettsia felis URRWXCal2] Length = 186 Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats. Identities = 86/186 (46%), Positives = 125/186 (67%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ +N++++M + L ++ LRTGR S ++LD V VEAYGS +PL+QVA+++ Sbjct: 1 MDTETLKKNLQEKMDKALKVLDHELKGLRTGRASVNLLDSVTVEAYGSKMPLSQVASLST 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R + V VWDK MV+SVE+GI +NLGL P +GQ++R+P+P TEERR LVK+AH Sbjct: 61 PDARTINVQVWDKSMVSSVEKGITIANLGLTPATDGQLIRLPIPALTEERRKELVKLAHK 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 Y E +KIS+RNIRRDG + LKK K ++D SL +QK+TD +DS ++K+ Sbjct: 121 YGEDTKISLRNIRRDGNEELKKLEKDNIIAKDEHHSLSEQVQKLTDDYSSKVDSAIKQKE 180 Query: 181 KEIMHF 186 +EIM Sbjct: 181 QEIMTV 186 >gi|297568948|ref|YP_003690292.1| ribosome recycling factor [Desulfurivibrio alkaliphilus AHT2] gi|296924863|gb|ADH85673.1| ribosome recycling factor [Desulfurivibrio alkaliphilus AHT2] Length = 184 Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats. Identities = 80/186 (43%), Positives = 125/186 (67%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M++VI + D+M +I ++++ +RTGR S S+LD VKVEAYGS +PLNQVA +T+ Sbjct: 1 MDEVI--LEMSDKMEKSIEAYRRELSRIRTGRASLSLLDGVKVEAYGSSMPLNQVATLTI 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E RM+V+ WD + V+++E+ IH S++GL P +G+V+R+ +P+ TEERR +VK Sbjct: 59 PESRMIVIQPWDAQQVSAIEKAIHASDIGLTPNSDGKVIRLMIPQLTEERRKEMVKQVKK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 +E+ +++VRN RR+ +D LKK + + ED L+++ Q+ TD IK IDS EK+ Sbjct: 119 ISEEYRVAVRNSRREAIDTLKKLKNDKQLPEDDFFRLQDEAQQETDRFIKQIDSIMAEKE 178 Query: 181 KEIMHF 186 KE+M Sbjct: 179 KEMMEV 184 >gi|302542189|ref|ZP_07294531.1| ribosome recycling factor [Streptomyces hygroscopicus ATCC 53653] gi|302459807|gb|EFL22900.1| ribosome recycling factor [Streptomyces himastatinicus ATCC 53653] Length = 185 Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats. Identities = 59/174 (33%), Positives = 103/174 (59%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M + K+D +RTGR P+M + + + YG+ P+NQ+A+ +V EPRM V++ +D Sbjct: 12 KMEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMAVITPFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K + ++E+ I +S+LG+NP +G ++R+ PE TE+RR +KVA E +KIS+R+I Sbjct: 72 KSALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEQRRKEFIKVAKGKGEDAKISIRSI 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RR + + K K G+ ED E ++ +T + +D + K+ E++ Sbjct: 132 RRKAKESIDKLIKDGEVGEDEGRRAEKELDDLTAKYVAQVDELLKHKEAELLEV 185 >gi|7388105|sp|P82231|RRFC_SPIOL RecName: Full=Ribosome-recycling factor, chloroplastic; Short=RRF; AltName: Full=CpFrr; AltName: Full=RRFHCP; AltName: Full=Ribosome-releasing factor, chloroplastic; Flags: Precursor gi|4689034|emb|CAB41419.1| chloroplast ribosome recycling factor protein [Spinacia oleracea] Length = 271 Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats. Identities = 69/178 (38%), Positives = 113/178 (63%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 N K RM TI ++ + ++RT R SP+MLD ++VE YG+ V L +A ++ + L++ Sbjct: 94 NTKQRMEKTIETIRSNFNSVRTNRASPTMLDRIEVEYYGTPVSLKSIAQISTPDASSLLI 153 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 S +DK + ++E+ I S LG++P +G+V+R+ +P T +RR L KV AE+ K++ Sbjct: 154 SPYDKSSLKAIEKAIVTSQLGVSPNNDGEVIRLSLPPLTSDRRKELAKVVSKLAEEGKVA 213 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 VRNIRRD + +K K K SED V L D+QK+TD +K ++S +++K++E+M Sbjct: 214 VRNIRRDALKSYEKLEKEKKLSEDNVKDLSADLQKLTDEYMKKVESIYKQKEQELMKV 271 >gi|313667490|ref|YP_004047774.1| ribosome recycling factor [Neisseria lactamica ST-640] gi|309379113|emb|CBX22244.1| unnamed protein product [Neisseria lactamica Y92-1009] gi|313004952|emb|CBN86379.1| ribosome recycling factor [Neisseria lactamica 020-06] Length = 185 Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + + +M ++ LK+++ +RTGR +LD V+VE +GS VP++QVANVT+L+ R + Sbjct: 7 KTAEGKMQRSVEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVANVTLLDARTIG 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V ++ M A VE+ I +SNLGLNP G ++R+P+P TEERR L+KV AE+ ++ Sbjct: 67 VKPFEGNMAAKVEKAIRDSNLGLNPASVGDLIRVPMPMLTEERRKDLIKVVRGEAEEGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RN+RRD DH+KK K + SED E +QK+TD I D K++++M Sbjct: 127 SIRNVRRDANDHIKKLLKDKEISEDEARRGEEAVQKLTDKYIAEADKLLTAKEEDLMAV 185 >gi|84498386|ref|ZP_00997183.1| ribosome recycling factor [Janibacter sp. HTCC2649] gi|84381886|gb|EAP97769.1| ribosome recycling factor [Janibacter sp. HTCC2649] Length = 185 Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats. Identities = 56/180 (31%), Positives = 104/180 (57%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K + +RTGR PSM + V V+ YG+ PL Q+A+ E R + Sbjct: 6 LLEAEEKMDKAVEVAKDNFAAIRTGRAHPSMFNKVIVDYYGAPTPLQQLASFQTPEARTI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +DK + ++E+ + +++LG+NP +G ++R +P+ TEERR +K+A AE +K Sbjct: 66 LISPFDKGAMNNIEKALRDADLGVNPSNDGNIIRCILPQLTEERRKEYIKMARGQAEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RN+RR + +++ K G ED + E D++ T + ID + K+ E++ Sbjct: 126 VAIRNVRRTAKESIERLVKDGDVGEDEGSRAEKDLESTTKKYVDTIDEVLKGKETELLEV 185 >gi|303232806|ref|ZP_07319491.1| ribosome recycling factor [Atopobium vaginae PB189-T1-4] gi|302481292|gb|EFL44367.1| ribosome recycling factor [Atopobium vaginae PB189-T1-4] Length = 181 Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats. Identities = 72/186 (38%), Positives = 108/186 (58%), Gaps = 5/186 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M++ D K M IS LK + +RTGR +P +LD +KV+ YG P+ Q+A + V Sbjct: 1 MSEYTDF--AKSHMTRAISALKTNFSKVRTGRANPQVLDGIKVDYYGQPTPILQLAGIKV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EP +L V WDK + ++E+ I S+LG+ P +G +R+P P+ T++RRL LVK Sbjct: 59 PEPTVLAVEPWDKSSLKAIEKAIEASDLGITPSNDGVTIRLPFPKPTQQRRLELVKECKQ 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE +K+++RN RRD K+ + + SED V+ + IQKITD I +D + K Sbjct: 119 YAEDAKVAIRNARRDANG---KAERDEELSEDGVSREKKAIQKITDDFIAQVDELLKTKS 175 Query: 181 KEIMHF 186 E+M Sbjct: 176 AEVMEI 181 >gi|284107227|ref|ZP_06386368.1| ribosome recycling factor [Candidatus Poribacteria sp. WGA-A3] gi|283829974|gb|EFC34253.1| ribosome recycling factor [Candidatus Poribacteria sp. WGA-A3] Length = 186 Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats. Identities = 67/180 (37%), Positives = 111/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + + +M + LKK++ ++R R S S+ D +KV+ YG+ L QV ++++ + R++ Sbjct: 7 IDALSQKMDGALDHLKKELGSIRGSRASLSLFDHIKVDYYGTPTALQQVGSLSMPDSRLI 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WD + +E+ I S+LGLNP +G+V+RIP+P +EERR VKV Y E++K Sbjct: 67 MIQPWDPTSIKDIEKSILSSDLGLNPSNDGKVIRIPIPALSEERRKEFVKVCRKYGEETK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I +R IRR+G D LK+ +K +ED + E IQKI D IK +D ++K++EI+ Sbjct: 127 IHIRGIRREGNDELKRLQKDATITEDDLRRGEATIQKIVDGKIKLVDELLKKKEEEILEI 186 >gi|77164329|ref|YP_342854.1| ribosome recycling factor [Nitrosococcus oceani ATCC 19707] gi|254434229|ref|ZP_05047737.1| ribosome recycling factor [Nitrosococcus oceani AFC27] gi|123594762|sp|Q3JCX2|RRF_NITOC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|76882643|gb|ABA57324.1| ribosome recycling factor [Nitrosococcus oceani ATCC 19707] gi|207090562|gb|EDZ67833.1| ribosome recycling factor [Nitrosococcus oceani AFC27] Length = 187 Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats. Identities = 72/179 (40%), Positives = 111/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ RM +++ LK+ LR R S+LD + V YG++VPLNQVANV+V + R L Sbjct: 9 EDAAQRMDKSLNALKQAFARLRANRAHTSLLDHITVSYYGNNVPLNQVANVSVEDARTLT 68 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+ W+++MV +E+ I S LGLNP+ G V+R+P+P TEERR +V++ AE +++ Sbjct: 69 VTPWERQMVPVIEKAIMTSELGLNPVTAGTVIRVPLPVLTEERRREMVRLVRQEAEAARV 128 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD +K+ K + SED E IQKITD+ I +D K++++M Sbjct: 129 AMRNIRRDSNHTIKELIKEKEISEDDQRRAEEAIQKITDNHITQVDELLAVKEQDLMEV 187 >gi|330466307|ref|YP_004404050.1| ribosome recycling factor [Verrucosispora maris AB-18-032] gi|328809278|gb|AEB43450.1| ribosome recycling factor [Verrucosispora maris AB-18-032] Length = 185 Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats. Identities = 61/180 (33%), Positives = 108/180 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K++ +RTGR +P+M + ++ YGS PL Q+A+V + EPRM Sbjct: 6 LLEAEEKMERAVEHAKEEFGAIRTGRATPAMFSKIIIDYYGSPTPLTQMASVAIPEPRMA 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D + ++E+ I +S+LG+NP EG LRI +P+ TEERR ++KVA E++K Sbjct: 66 IIKPYDNSQINAMEKAIRDSDLGVNPNNEGNQLRILLPQMTEERRRDMIKVARHKGEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRR G + L + K G+ ED E ++ +T + ++D + K+ E++ Sbjct: 126 VAIRNIRRKGKEELDRLVKDGEVGEDDGRRAEKELDDLTQRYVAHVDELVKHKETELLEV 185 >gi|86742260|ref|YP_482660.1| ribosome recycling factor [Frankia sp. CcI3] gi|123723539|sp|Q2J711|RRF_FRASC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|86569122|gb|ABD12931.1| ribosome recycling factor [Frankia sp. CcI3] Length = 185 Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats. Identities = 56/180 (31%), Positives = 109/180 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M +S ++D +RTGR++P++ + V+ YG+ P+ Q+A+ + EPRM+ Sbjct: 6 LLEAEEKMEKAVSVAREDFANIRTGRITPAVFSKILVDYYGAPTPVQQLASFHIPEPRMV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK + ++E+ + +S+LG+NP +G ++R PE +E+RR LVKVA AE+++ Sbjct: 66 IITPYDKSSLGAIEKAVRDSDLGVNPSNDGTIIRCVFPELSEQRRRDLVKVARTKAEEAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+RN+RR D + + + G A ED E D+ + T + +D K+ +++ Sbjct: 126 VSIRNVRRHAKDTIDRIVRDGDAGEDEGRRGEKDLDEATHRYVGQVDELLRLKESDLLSV 185 >gi|226306032|ref|YP_002765992.1| ribosome recycling factor [Rhodococcus erythropolis PR4] gi|229491439|ref|ZP_04385263.1| ribosome recycling factor [Rhodococcus erythropolis SK121] gi|259494552|sp|C0ZY18|RRF_RHOE4 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226185149|dbj|BAH33253.1| ribosome recycling factor [Rhodococcus erythropolis PR4] gi|229321724|gb|EEN87521.1| ribosome recycling factor [Rhodococcus erythropolis SK121] Length = 185 Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats. Identities = 65/180 (36%), Positives = 109/180 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M ++ K D+ ++RTGR +P M + ++ YGS P+ Q+A++ V E RM+ Sbjct: 6 LFEAEEKMEKAVTVAKDDLGSVRTGRANPGMFSRIVIDYYGSITPITQLASINVPEARMV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V ++ + ++E I S+LG+NP +G ++RI VP+ TEERR LVK A + E SK Sbjct: 66 IVKPYEASQLNAIETAIRNSDLGVNPSNDGSIIRISVPQLTEERRRELVKQAKSKGEDSK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRR MD L + +K G+A ED V E ++ K T + ++ + K+ E+M Sbjct: 126 VTLRNIRRKAMDELGRIQKDGEAGEDEVGRAEKELDKTTAKYVHTVEELVKHKEAELMEV 185 >gi|227503382|ref|ZP_03933431.1| ribosome recycling factor [Corynebacterium accolens ATCC 49725] gi|306836376|ref|ZP_07469354.1| ribosome recycling factor [Corynebacterium accolens ATCC 49726] gi|227075885|gb|EEI13848.1| ribosome recycling factor [Corynebacterium accolens ATCC 49725] gi|304567736|gb|EFM43323.1| ribosome recycling factor [Corynebacterium accolens ATCC 49726] Length = 185 Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats. Identities = 68/178 (38%), Positives = 115/178 (64%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 ++ M ++ ++ ++T+RTGR +P+M + + E YG+ P+ Q+A ++V EPRML++ Sbjct: 8 EAEEHMTASVEHTREQLVTIRTGRANPAMFNGLIAEYYGAPTPITQMATISVPEPRMLLI 67 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 +++ M+ +E I S+LG+NP +G VLR+ VP+ TEERR +VK+A + E KI+ Sbjct: 68 KPYEQSMIQEIENSIRNSDLGVNPTNDGHVLRVTVPQLTEERRKEMVKLAKSKGEDGKIA 127 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +RNIRR M+ LKK +K G+ ED V + E +++KIT ++ +D E K+ E+M Sbjct: 128 IRNIRRKAMEQLKKLQKDGEEGEDEVLAAEKEMEKITAGYVEQVDKLVENKESELMEV 185 >gi|298489665|ref|YP_003719842.1| ribosome recycling factor ['Nostoc azollae' 0708] gi|298231583|gb|ADI62719.1| ribosome recycling factor ['Nostoc azollae' 0708] Length = 182 Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats. Identities = 59/177 (33%), Positives = 107/177 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +M T+ ++ T+RTGR + S+LD ++VE YGS PL +AN++ + + Sbjct: 3 LAEAESKMQKTVESTQQAFNTIRTGRANASLLDRIQVEYYGSPTPLKSLANISTPDASTI 62 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D+ + +E+ I S++G+ P +G V+R+ +P T +RR K+A YAE+ + Sbjct: 63 LIQPYDRSSLNILEKAISLSDIGITPSNDGSVIRLNIPPLTSDRRKEFAKLAAKYAEEGR 122 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 + +RNIRRD +D ++K K+ + SED ++ +QK+T+ + ID EK+K+I Sbjct: 123 VGIRNIRRDALDSIRKQEKAAEISEDESRDQQDKLQKLTNKYTEKIDHLLTEKEKDI 179 >gi|225018404|ref|ZP_03707596.1| hypothetical protein CLOSTMETH_02351 [Clostridium methylpentosum DSM 5476] gi|224948822|gb|EEG30031.1| hypothetical protein CLOSTMETH_02351 [Clostridium methylpentosum DSM 5476] Length = 184 Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats. Identities = 74/180 (41%), Positives = 112/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ + +M T+ L+ + T+R GR +P++LD + V+ YG+ +NQ+A V+V E R+L Sbjct: 5 LEKSESKMHKTVERLEHEYTTIRAGRANPNVLDKILVDYYGTPTQINQMAAVSVSEARIL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+S WD + ++E+ I S+LG+NP +G+V+RI P+ TEERR +VK H E +K Sbjct: 65 VISPWDATSLKAIEKAIQASDLGINPTNDGKVIRIAFPQLTEERRKEIVKEVHKMREDAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD MD K +K G SED + E +Q + D K ID+ K+KEIM Sbjct: 125 VAVRNIRRDAMDKFKAIKKEGSVSEDEIKDGEKKLQNMVDKFCKEIDNVAAGKEKEIMEI 184 >gi|307243333|ref|ZP_07525497.1| ribosome recycling factor [Peptostreptococcus stomatis DSM 17678] gi|306493280|gb|EFM65269.1| ribosome recycling factor [Peptostreptococcus stomatis DSM 17678] Length = 185 Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats. Identities = 72/178 (40%), Positives = 112/178 (62%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 ++++M TI LK + T+R GR + SMLD V+V+ YG+ P+NQ+A + V E R+L + Sbjct: 8 QLEEQMEKTIEALKFEFGTIRAGRANASMLDKVRVDYYGTPTPVNQMAAIAVSEGRILTI 67 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 + WDK + ++E+ I ES++G+ P +G V+R+ VP TEERR L K A +E K+ Sbjct: 68 TPWDKSSIHTIEKAISESDVGIAPANDGSVIRLVVPPLTEERRKELAKKASKASESFKVR 127 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +RN RRD D +KK K+G+ +ED +++QK+TD IK I+ K+K+IM Sbjct: 128 IRNDRRDANDKIKKMEKAGELAEDDAKKAIDEVQKMTDKYIKTIEELTANKEKDIMEV 185 >gi|157150295|ref|YP_001450730.1| ribosome recycling factor [Streptococcus gordonii str. Challis substr. CH1] gi|189044081|sp|A8AY70|RRF_STRGC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|157075089|gb|ABV09772.1| ribosome recycling factor [Streptococcus gordonii str. Challis substr. CH1] Length = 185 Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 114/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+RM + L ++ +R GR + S+LD + VE YG PLNQ+A++T+ E R+L Sbjct: 6 VEKAKERMSHSHQNLAREFGAVRAGRANASLLDRISVEYYGVETPLNQIASITIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + +ER I+ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LVTPFDKSSLKDIERAINASDLGITPASDGSVIRLVIPALTEETRRDLAKEVKKIGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIRRD MD KK K+ + +ED + +LE DIQK+TD +K+ID K+KE++ Sbjct: 126 IAIRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDEMTAHKEKELLEV 185 >gi|240118875|ref|ZP_04732937.1| ribosome recycling factor [Neisseria gonorrhoeae PID1] gi|268604584|ref|ZP_06138751.1| ribosome recycling factor [Neisseria gonorrhoeae PID1] gi|268588715|gb|EEZ53391.1| ribosome recycling factor [Neisseria gonorrhoeae PID1] Length = 185 Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + + +M ++ LK+++ +RTGR +LD V+VE +GS VP++QVANVT+L+ R + Sbjct: 7 KTAEGKMQRSVEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVANVTLLDARTIG 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V ++ M A VE+ I +SNLGLNP G ++R+P+P TEERR L+KV AE+ ++ Sbjct: 67 VKPFEGNMAAKVEKAIRDSNLGLNPAAVGDLIRVPMPMLTEERRKNLIKVVRGEAEEGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RN+RRD DH+KK K + SED E +QK+TD I D K++++M Sbjct: 127 SIRNVRRDANDHIKKLLKDKEISEDEARRGEEAVQKLTDKYIAEADKVLAAKEEDLMAV 185 >gi|152991582|ref|YP_001357304.1| ribosome recycling factor [Nitratiruptor sp. SB155-2] gi|166230808|sp|A6Q638|RRF_NITSB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|151423443|dbj|BAF70947.1| ribosome recycling factor Frr [Nitratiruptor sp. SB155-2] Length = 186 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 72/186 (38%), Positives = 116/186 (62%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ + +D M ++ LKKD TLRTGRV+ ++++ +KV+ YG+ PLNQ A+V Sbjct: 3 LNEIYEY--ARDHMQKSLDVLKKDFNTLRTGRVTTAVVENIKVDYYGAPTPLNQAASVVA 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + +V+S WDK ++ +ER I E+N+G+NP +G +++ P T E+R A K A Sbjct: 61 ADATTIVISPWDKSLLGEIERAIQEANIGVNPNNDGDQIKLFFPPMTVEQREAEAKKAKQ 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 + EK+KI++RN+RRD D +KK K +ED ++QKITD IK +D ++K+ Sbjct: 121 FGEKAKIAIRNVRRDANDKIKKLFKDKAITEDEEKRGLEEVQKITDEFIKKVDDLVKQKE 180 Query: 181 KEIMHF 186 +EIM Sbjct: 181 QEIMKV 186 >gi|238759946|ref|ZP_04621100.1| Ribosome-recycling factor [Yersinia aldovae ATCC 35236] gi|238701853|gb|EEP94416.1| Ribosome-recycling factor [Yersinia aldovae ATCC 35236] Length = 185 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 70/166 (42%), Positives = 110/166 (66%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM + + + +RTGR SPS+LD ++VE YG+ PL Q+AN+ V + R L Sbjct: 7 KDTEVRMEKCLEAFQNHISKIRTGRASPSILDGIQVEYYGTATPLRQLANIVVEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ + A+VE+ I S+LGLNP G V+R+P+P TEERR L+KV A AE+ ++ Sbjct: 67 LTVFDRSLSAAVEKAIMTSDLGLNPSSAGTVIRVPLPALTEERRKDLIKVVRAEAEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNID 173 S+RN+RRD + +K K + SED ++D+QK+TD+ IK +D Sbjct: 127 SIRNVRRDANEKVKALLKDKEISEDEDRRSQDDVQKLTDAFIKKVD 172 >gi|313891920|ref|ZP_07825521.1| ribosome recycling factor [Dialister microaerophilus UPII 345-E] gi|329120951|ref|ZP_08249582.1| ribosome recycling factor [Dialister micraerophilus DSM 19965] gi|313119563|gb|EFR42754.1| ribosome recycling factor [Dialister microaerophilus UPII 345-E] gi|327471113|gb|EGF16567.1| ribosome recycling factor [Dialister micraerophilus DSM 19965] Length = 185 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 79/180 (43%), Positives = 127/180 (70%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + +++RM +I LK + ++RTG+ SPS+LD + V+ YG+ P++QV +++V E RML Sbjct: 6 INELRERMDKSIQALKTEFSSIRTGQASPSLLDRIFVDYYGTQTPISQVGSISVPEARML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV WDK ++ +E+ I +S+LGL P+ +G ++R+ +P+ TEERR LVK+A+ AE++K Sbjct: 66 VVQPWDKSVLKEIEKAILQSDLGLVPMNDGNLIRMAIPQLTEERRKDLVKIANKKAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRDG LKK K G S+D+++ E+++Q +TD IK ID+ E+K KEIM Sbjct: 126 VAIRNIRRDGNTFLKKEEKKGDISKDIISEAEDEVQDLTDIKIKEIDAVTEKKIKEIMSV 185 >gi|59802114|ref|YP_208826.1| Rrf [Neisseria gonorrhoeae FA 1090] gi|239997972|ref|ZP_04717896.1| ribosome recycling factor [Neisseria gonorrhoeae 35/02] gi|240015050|ref|ZP_04721963.1| ribosome recycling factor [Neisseria gonorrhoeae DGI18] gi|240017499|ref|ZP_04724039.1| ribosome recycling factor [Neisseria gonorrhoeae FA6140] gi|240081639|ref|ZP_04726182.1| ribosome recycling factor [Neisseria gonorrhoeae FA19] gi|240113920|ref|ZP_04728410.1| ribosome recycling factor [Neisseria gonorrhoeae MS11] gi|240116653|ref|ZP_04730715.1| ribosome recycling factor [Neisseria gonorrhoeae PID18] gi|240122119|ref|ZP_04735081.1| ribosome recycling factor [Neisseria gonorrhoeae PID24-1] gi|240124412|ref|ZP_04737368.1| ribosome recycling factor [Neisseria gonorrhoeae PID332] gi|240124716|ref|ZP_04737602.1| ribosome recycling factor [Neisseria gonorrhoeae SK-92-679] gi|240129089|ref|ZP_04741750.1| ribosome recycling factor [Neisseria gonorrhoeae SK-93-1035] gi|254494674|ref|ZP_05107845.1| ribosome recycling factor [Neisseria gonorrhoeae 1291] gi|260439588|ref|ZP_05793404.1| ribosome recycling factor [Neisseria gonorrhoeae DGI2] gi|268593821|ref|ZP_06127988.1| ribosome-recycling factor [Neisseria gonorrhoeae 35/02] gi|268597736|ref|ZP_06131903.1| ribosome-recycling factor [Neisseria gonorrhoeae FA19] gi|268599984|ref|ZP_06134151.1| ribosome recycling factor [Neisseria gonorrhoeae MS11] gi|268602321|ref|ZP_06136488.1| ribosome recycling factor [Neisseria gonorrhoeae PID18] gi|268683041|ref|ZP_06149903.1| ribosome recycling factor [Neisseria gonorrhoeae PID332] gi|268683291|ref|ZP_06150153.1| ribosome recycling factor [Neisseria gonorrhoeae SK-92-679] gi|268687470|ref|ZP_06154332.1| ribosome recycling factor [Neisseria gonorrhoeae SK-93-1035] gi|75432366|sp|Q5F5X3|RRF_NEIG1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|59719009|gb|AAW90414.1| putative ribosome recycling factor [Neisseria gonorrhoeae FA 1090] gi|226513714|gb|EEH63059.1| ribosome recycling factor [Neisseria gonorrhoeae 1291] gi|268547210|gb|EEZ42628.1| ribosome-recycling factor [Neisseria gonorrhoeae 35/02] gi|268551524|gb|EEZ46543.1| ribosome-recycling factor [Neisseria gonorrhoeae FA19] gi|268584115|gb|EEZ48791.1| ribosome recycling factor [Neisseria gonorrhoeae MS11] gi|268586452|gb|EEZ51128.1| ribosome recycling factor [Neisseria gonorrhoeae PID18] gi|268623325|gb|EEZ55725.1| ribosome recycling factor [Neisseria gonorrhoeae PID332] gi|268623575|gb|EEZ55975.1| ribosome recycling factor [Neisseria gonorrhoeae SK-92-679] gi|268627754|gb|EEZ60154.1| ribosome recycling factor [Neisseria gonorrhoeae SK-93-1035] gi|317165416|gb|ADV08957.1| ribosome recycling factor [Neisseria gonorrhoeae TCDC-NG08107] Length = 185 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + + +M ++ LK+++ +RTGR +LD V+VE +GS VP++QVANVT+L+ R + Sbjct: 7 KTAEGKMQRSVEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVANVTLLDARTIG 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V ++ M A VE+ I +SNLGLNP G ++R+P+P TEERR L+KV AE+ ++ Sbjct: 67 VKPFEGNMAAKVEKAIRDSNLGLNPAAVGDLIRVPMPMLTEERRKDLIKVVRGEAEEGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RN+RRD DH+KK K + SED E +QK+TD I D K++++M Sbjct: 127 SIRNVRRDANDHIKKLLKDKEISEDEARRGEEAVQKLTDKYIAEADKVLAAKEEDLMAV 185 >gi|199597107|ref|ZP_03210539.1| Ribosome recycling factor [Lactobacillus rhamnosus HN001] gi|258508619|ref|YP_003171370.1| ribosome recycling factor [Lactobacillus rhamnosus GG] gi|199591911|gb|EDY99985.1| Ribosome recycling factor [Lactobacillus rhamnosus HN001] gi|257148546|emb|CAR87519.1| Ribosome-recycling factor [Lactobacillus rhamnosus GG] gi|259649926|dbj|BAI42088.1| ribosome recycling factor [Lactobacillus rhamnosus GG] Length = 185 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 76/185 (41%), Positives = 117/185 (63%), Gaps = 2/185 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 NQ+I + K MG T L++++ +R GR + S+L+ + V+ YG+ PLNQ+A +TV Sbjct: 3 NQII--EQAKVNMGKTEESLQRELGNIRAGRANASLLNQITVDYYGAPTPLNQMAAITVP 60 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 E R+L +S +DK + ++E I+ S+LG+NP +G V+R+ +P+ T ERR + K + Sbjct: 61 EARVLQISPYDKSSLKNIETAINASDLGINPANDGDVIRLVIPQLTGERRKEIAKEVGKF 120 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 +E +KI+VRNIRR+G+D LK+ K G +ED + LE D+QK TD K ID K+K Sbjct: 121 SENAKIAVRNIRREGLDKLKRQEKDGDITEDELHRLEKDMQKATDDATKRIDEIAAAKEK 180 Query: 182 EIMHF 186 EI Sbjct: 181 EITEV 185 >gi|323705413|ref|ZP_08116988.1| ribosome recycling factor [Thermoanaerobacterium xylanolyticum LX-11] gi|323535315|gb|EGB25091.1| ribosome recycling factor [Thermoanaerobacterium xylanolyticum LX-11] Length = 184 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 71/180 (39%), Positives = 124/180 (68%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ +++M +I+ LK ++M++R GR +P++LD + ++ YG+ P+N++A +T EP+++ Sbjct: 5 LKSTEEKMKKSIAVLKNELMSIRAGRANPALLDRISIDYYGTMTPINKLATITAPEPKII 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WD ++ +E+ I +S+L +NP +G+++R+ P+ TEERR LVK+ H E++K Sbjct: 65 IIQPWDTSKISEIEKAIQKSDLNINPTSDGKIIRLVFPDLTEERRKELVKLVHKKGEEAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VR IRRD D +KK K+G+ SED E ++QK+TD IK ID E+K+KEIM Sbjct: 125 VAVRQIRRDANDAIKKMDKNGEISEDEKLKSEENVQKLTDKYIKEIDKILEQKEKEIMEI 184 >gi|253996534|ref|YP_003048598.1| ribosome recycling factor [Methylotenera mobilis JLW8] gi|253983213|gb|ACT48071.1| ribosome recycling factor [Methylotenera mobilis JLW8] Length = 185 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 71/179 (39%), Positives = 108/179 (60%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N +M ++ LK D+ +RTGR +LD V VE YGS V +NQVANV + + R + Sbjct: 7 KNADLKMQKSLEALKNDLAKVRTGRAHVGLLDHVMVEYYGSMVAVNQVANVNLGDARTIN 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V ++K M+A VE+ I +S+LGLNP G ++R+P+P TEERR L K+ E +K+ Sbjct: 67 VQPYEKNMIAKVEKAIRDSDLGLNPATNGDLIRVPMPMLTEERRRDLTKIVRTEGEGAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD D LKK K SED ++++QK TD + +D + K+ ++M Sbjct: 127 AIRNVRRDANDALKKLVKDKAISEDDERRAQDEVQKSTDKAVAEVDKMLQVKEADLMAV 185 >gi|160947396|ref|ZP_02094563.1| hypothetical protein PEPMIC_01330 [Parvimonas micra ATCC 33270] gi|158446530|gb|EDP23525.1| hypothetical protein PEPMIC_01330 [Parvimonas micra ATCC 33270] Length = 185 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 72/180 (40%), Positives = 117/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + ++ +M +I + ++ T+R GR +P++LD V+ YG+ P+ QVA+++V E R+L Sbjct: 6 INELERKMSKSIESYETELTTVRAGRANPTILDQFTVDYYGTETPIKQVASISVPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WD ++ +E+ + SNLG+ P +G+V+R+P P TE+RR LVKV Y E SK Sbjct: 66 VIQPWDASLITPIEKVLLASNLGITPSNDGKVIRLPFPALTEDRRKELVKVVKGYGENSK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RN+RRDG+D LKK K + SED + E ++QK+TD IK ++ + K+KE+M Sbjct: 126 IAIRNLRRDGLDKLKKLEKDKEISEDELRQAEEEVQKVTDKFIKKVEDITKLKEKELMEI 185 >gi|289423559|ref|ZP_06425360.1| ribosome recycling factor [Peptostreptococcus anaerobius 653-L] gi|289156061|gb|EFD04725.1| ribosome recycling factor [Peptostreptococcus anaerobius 653-L] Length = 185 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 72/178 (40%), Positives = 116/178 (65%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 ++++M TI LK + T+R GR + SMLD V+V+ YG+ P+NQ+A V V E R+L + Sbjct: 8 ELEEQMEKTIEALKFEFGTIRAGRANASMLDKVRVDYYGTPTPVNQMAAVAVSEGRVLTI 67 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 + WDK ++ ++E+ I +S++G+ P +G V+R+ VP+ TEERR L K A+ +E K+ Sbjct: 68 TPWDKSVIHAIEKAISDSDIGIAPSNDGSVIRLTVPQLTEERRKELAKKANKASESFKVR 127 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +RN RRD D +KK K+ + +ED +++QK+TD IK ID +EK+K+I+ Sbjct: 128 IRNERRDANDKIKKMEKAAELTEDDAKKATDEVQKMTDKYIKVIDQLTDEKEKDILSV 185 >gi|257470869|ref|ZP_05634959.1| ribosome recycling factor (RRF) [Fusobacterium ulcerans ATCC 49185] gi|317065071|ref|ZP_07929556.1| ribosome Recycling Factor [Fusobacterium ulcerans ATCC 49185] gi|313690747|gb|EFS27582.1| ribosome Recycling Factor [Fusobacterium ulcerans ATCC 49185] Length = 188 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 85/179 (47%), Positives = 120/179 (67%), Gaps = 2/179 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +++ ++MG I K ++R GR S SMLD VKVE YGS +PLNQV +V+ E R+L Sbjct: 7 VKSCNEKMGKAIEATKHKFTSIRAGRASVSMLDSVKVEQYGSDMPLNQVGSVSAPEARLL 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK +++ +E+ I +NLGL P +G+V+R+ +PE T ERR VK+A AE K Sbjct: 67 VIDPWDKSLISKIEKAIMAANLGLTPNNDGKVIRLVMPELTAERRKEYVKMAKTEAENGK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGK--ASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 ++VRNIR+DG + LKK K + SED V +LE +IQK+TD+ IK ID F +K+KEI Sbjct: 127 VAVRNIRKDGNNDLKKLSKDKESPISEDEVKTLEAEIQKLTDAHIKAIDDLFAKKEKEI 185 >gi|315641203|ref|ZP_07896280.1| ribosome recycling factor [Enterococcus italicus DSM 15952] gi|315482970|gb|EFU73489.1| ribosome recycling factor [Enterococcus italicus DSM 15952] Length = 185 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 72/186 (38%), Positives = 120/186 (64%), Gaps = 1/186 (0%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M I L IK +M T L++++ +R GR + S+LD + V YG+ P+NQ+A++T+ Sbjct: 1 MADAI-LNEIKTKMEKTAENLQRELGQIRAGRANASLLDRISVVYYGAPTPINQLASITI 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R+L+++ +DK + +E+ I S++G+NP +G V+R+ +P+ TEERR LVK Sbjct: 60 PEARILMITPFDKSTLKDIEKAILASDIGINPTSDGNVIRLVIPQLTEERRKELVKEVKK 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E +KI++RN RRDGMD KK +K+G +ED + + E IQ++TD++IK +D K+ Sbjct: 120 ETESAKIAIRNARRDGMDSYKKQQKAGDITEDDLRTSEKTIQELTDASIKELDKIAASKE 179 Query: 181 KEIMHF 186 +E++ Sbjct: 180 EELLEV 185 >gi|225375366|ref|ZP_03752587.1| hypothetical protein ROSEINA2194_00991 [Roseburia inulinivorans DSM 16841] gi|225212855|gb|EEG95209.1| hypothetical protein ROSEINA2194_00991 [Roseburia inulinivorans DSM 16841] Length = 183 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 109/180 (60%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++M T++ L ++ ++R GR +P +LD ++V+ YG+ P+ QVANV V EPRM+ Sbjct: 5 LVQFDEKMQKTMNNLSEEFGSIRAGRANPHVLDKLRVDYYGTPTPIQQVANVNVPEPRMI 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + W+ MV +E+ I S+LG+NP +G+ +R+ PE TEERR L K E +K Sbjct: 65 QIQPWEASMVKEIEKVIMTSDLGINPTNDGKTIRLLFPELTEERRKDLAKDVKKKGESAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD D KK K SED + +LE + QK+TD I +D E K KEI+ Sbjct: 125 VAIRNIRRDANDSFKKLAKE-DVSEDEIKALEENAQKMTDKYIAAVDEAVEVKTKEILTV 183 >gi|167746791|ref|ZP_02418918.1| hypothetical protein ANACAC_01503 [Anaerostipes caccae DSM 14662] gi|317471594|ref|ZP_07930938.1| ribosome recycling protein [Anaerostipes sp. 3_2_56FAA] gi|167653751|gb|EDR97880.1| hypothetical protein ANACAC_01503 [Anaerostipes caccae DSM 14662] gi|316900909|gb|EFV22879.1| ribosome recycling protein [Anaerostipes sp. 3_2_56FAA] Length = 181 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 69/180 (38%), Positives = 107/180 (59%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ +D+M + + + M +R GR +P +LD V V+ YG P+ QV NV+V E R + Sbjct: 2 LKKFEDKMQKSYENMTSEFMAIRAGRANPHVLDKVTVDYYGVPTPIQQVGNVSVPEARTI 61 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ W+ ++ +E+ I S++G+ P +G +R+ PE TEERR L K E +K Sbjct: 62 LIQPWEPNLLGEIEKAIMMSDIGITPNNDGSAIRLNFPELTEERRKDLAKDIKKRGETTK 121 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD D LKK K+ + ++D + E+++QK+TD IK ID E K KEIM Sbjct: 122 VAVRNIRRDANDELKKMNKANELNDDQLKDQESEVQKLTDVYIKKIDDAVEAKSKEIMTV 181 >gi|94967292|ref|YP_589340.1| ribosome recycling factor [Candidatus Koribacter versatilis Ellin345] gi|94549342|gb|ABF39266.1| ribosome recycling factor [Candidatus Koribacter versatilis Ellin345] Length = 195 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 114/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +K RM + +K++ RTGR S MLD V+ E YGS +PLNQVA +TV EP+++ Sbjct: 16 FGQLKTRMEKAVDDFRKELSATRTGRASVHMLDTVQAEYYGSMMPLNQVATITVPEPQLI 75 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +D + ++E+ I +LG+NP+ +G+++RIPVP TE+RR +VK H E+ + Sbjct: 76 LVTPFDPSALGAIEKAIRSGDLGMNPMNDGKIIRIPVPPLTEDRRKEMVKHLHKALEEHR 135 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRDG D +KK+ K K +ED +QK+TD IK ++ + K+KE+M Sbjct: 136 TAIRNIRRDGNDFIKKTLKDKKITEDEERGTMEHLQKLTDDEIKKMEEMCKTKEKEVMTV 195 >gi|229552426|ref|ZP_04441151.1| ribosome recycling factor [Lactobacillus rhamnosus LMS2-1] gi|258539797|ref|YP_003174296.1| ribosome recycling factor [Lactobacillus rhamnosus Lc 705] gi|229314163|gb|EEN80136.1| ribosome recycling factor [Lactobacillus rhamnosus LMS2-1] gi|257151473|emb|CAR90445.1| Ribosome-recycling factor [Lactobacillus rhamnosus Lc 705] Length = 185 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 75/185 (40%), Positives = 117/185 (63%), Gaps = 2/185 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 NQ+I + K MG T L++++ +R GR + S+L+ + V+ YG+ PLNQ+A +TV Sbjct: 3 NQII--EQAKVNMGKTEESLQRELGNIRAGRANASLLNQITVDYYGAPTPLNQMAAITVP 60 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 E R+L +S +DK + ++E I+ S+LG+NP +G V+R+ +P+ T ERR + K + Sbjct: 61 EARVLQISPYDKSSLKNIETAINASDLGINPANDGDVIRLVIPQLTGERRKEIAKEVGKF 120 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 +E +KI++RNIRR+G+D LK+ K G +ED + LE D+QK TD K ID K+K Sbjct: 121 SENAKIAIRNIRREGLDKLKRQEKDGDITEDELHRLEKDMQKATDDATKRIDEIAAAKEK 180 Query: 182 EIMHF 186 EI Sbjct: 181 EITEV 185 >gi|146328643|ref|YP_001209628.1| ribosome recycling factor [Dichelobacter nodosus VCS1703A] gi|166230785|sp|A5EV26|RRF_DICNV RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|146232113|gb|ABQ13091.1| ribosome recycling factor [Dichelobacter nodosus VCS1703A] Length = 185 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 80/186 (43%), Positives = 114/186 (61%), Gaps = 1/186 (0%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M Q I L++ + RM ++ L+ D+ +RTGR + S+LD ++VE YG+ VPL+Q ANV V Sbjct: 1 MTQEI-LKDTQSRMKKSVQTLEADLTKIRTGRANVSLLDHIEVEYYGAMVPLSQAANVNV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R L + +W+++MVA +E+ I S+LGL P GQ + I +P TEERR +VKV Sbjct: 60 TDHRTLSIQIWERDMVAKIEKAIINSDLGLTPNTAGQNIHINLPPLTEERRKEMVKVVKN 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E++KI+VRNIRRD L K + SED E +IQKITD + ID K+ Sbjct: 120 EGEQAKIAVRNIRRDANQSLSKLLTQKEISEDEQRKSEEEIQKITDHFVAEIDKVLMAKE 179 Query: 181 KEIMHF 186 KE+M Sbjct: 180 KELMEL 185 >gi|261400102|ref|ZP_05986227.1| ribosome recycling factor [Neisseria lactamica ATCC 23970] gi|269210329|gb|EEZ76784.1| ribosome recycling factor [Neisseria lactamica ATCC 23970] Length = 185 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 73/179 (40%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + + +M ++ LK+++ +RTGR +LD V+VE +GS +P++QVANVT+L+ R + Sbjct: 7 KTAEGKMQRSVEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMIPVSQVANVTLLDARTIG 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V ++ M A VE+ I +SNLGLNP G ++R+P+P TEERR L+KV AE+ ++ Sbjct: 67 VKPFEGNMAAKVEKAIRDSNLGLNPASVGDLIRVPMPMLTEERRKDLIKVVRGEAEEGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RN+RRD DH+KK K + SED E +QK+TD I D K++++M Sbjct: 127 SIRNVRRDANDHIKKLLKDKEISEDEARRGEEAVQKLTDKYIAEADKLLTAKEEDLMAV 185 >gi|15673991|ref|NP_268166.1| ribosome recycling factor [Lactococcus lactis subsp. lactis Il1403] gi|281492614|ref|YP_003354594.1| ribosome recycling factor [Lactococcus lactis subsp. lactis KF147] gi|13878747|sp|Q9CE39|RRF_LACLA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|12725055|gb|AAK06107.1|AE006430_12 ribosome recycling factor [Lactococcus lactis subsp. lactis Il1403] gi|281376278|gb|ADA65769.1| Ribosome recycling factor [Lactococcus lactis subsp. lactis KF147] gi|326407547|gb|ADZ64618.1| ribosome recycling factor [Lactococcus lactis subsp. lactis CV56] Length = 185 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 76/185 (41%), Positives = 124/185 (67%), Gaps = 2/185 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 N+++ +DRM ++ L++D+ +R GR + S+LD V+V YG+ PLNQ+A++T+ Sbjct: 3 NEIV--TTAQDRMKQSLGSLQRDLGHIRAGRANASLLDRVQVVYYGAPTPLNQLASITIP 60 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 E R+L+V+ +DK ++ +E+ ++ES+LG+ P +G V+R+ +P TEERR LVK Y Sbjct: 61 EARVLMVTPFDKSILKDIEKALYESDLGITPANDGSVIRLVIPMLTEERRRELVKEMGKY 120 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 E +K+++RNIRRD MD KKS K+ + +ED + LEN+IQK+TD +K D K+K Sbjct: 121 IESAKVAIRNIRRDAMDTAKKSEKAKEITEDDLKDLENNIQKVTDDAVKEADRLASIKEK 180 Query: 182 EIMHF 186 E++ Sbjct: 181 ELLDI 185 >gi|45644743|gb|AAS73131.1| predicted ribosome recycling factor [uncultured marine gamma proteobacterium EBAC20E09] Length = 184 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 71/180 (39%), Positives = 116/180 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+++ ++M +++ LK +RTGR +P++LD + V+ YG+ P+NQ +N++V E R L Sbjct: 5 LKDLTEKMEKSVTALKNAFNKIRTGRANPAILDDINVDYYGNPTPINQTSNISVEEGRSL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+S WDK ++ +E+ I S+LGLNP G ++R+ +P TEE R +K A A AE S+ Sbjct: 65 VISPWDKNLIPEIEKAILSSDLGLNPSTSGDLIRVTMPALTEETRQDYIKQARAEAENSR 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 IS+RNIRRD + K ++S + SED + +E+ IQK TD I +DS + K+ +++ Sbjct: 125 ISIRNIRRDANNSAKDMQQSSEISEDDLRRIEDLIQKETDKFISIVDSDLKNKESDLLEI 184 >gi|320352945|ref|YP_004194284.1| ribosome recycling factor [Desulfobulbus propionicus DSM 2032] gi|320121447|gb|ADW16993.1| ribosome recycling factor [Desulfobulbus propionicus DSM 2032] Length = 185 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 71/180 (39%), Positives = 113/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + ++++M + LK+D++ +RTGR S S+LD +KV AYGS + L+QV +T+ E M+ Sbjct: 6 IDQLREKMTASSEALKRDLVKIRTGRASLSLLDGIKVNAYGSQMSLDQVGTLTIPENNMI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WD +++ ++E+ I S LGL P +G V+R+ +P T ERR LVK E+ K Sbjct: 66 AIKPWDPQVLPAIEKAILASGLGLTPASDGNVVRLTIPPLTGERRKELVKQVKKIGEEYK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD ++ LKK +K + SED + L+ + QK+TD I ID K+KE+M Sbjct: 126 VAIRNIRRDAIETLKKMKKDKELSEDELFRLQEEAQKVTDGYIGQIDEITGGKEKEVMAV 185 >gi|291523272|emb|CBK81565.1| ribosome recycling factor [Coprococcus catus GD/7] Length = 185 Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 74/180 (41%), Positives = 112/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 LQ + +M ++ L+++ T+R GR +P +LD +KV+ YG+ PL QV NVTV E R+L Sbjct: 6 LQPYETKMQKSLDALEREYTTIRAGRANPHILDKLKVDYYGTPTPLQQVGNVTVPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ W+ +++ +E+ I S++G+ P +G+ +R+ PE TEERR L K + +K Sbjct: 66 MIQPWESKLIKDIEKAILASDIGITPTNDGKSIRLVFPELTEERRKELAKDVKKKGDAAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRDG D KKS K+ + SED A L+ +QKITD + +D E K KEIM Sbjct: 126 TAVRNIRRDGNDAFKKSNKAKEISEDEYAELQEKLQKITDKYVAMVDKAVEAKTKEIMTV 185 >gi|329119073|ref|ZP_08247765.1| ribosome recycling factor [Neisseria bacilliformis ATCC BAA-1200] gi|327464812|gb|EGF11105.1| ribosome recycling factor [Neisseria bacilliformis ATCC BAA-1200] Length = 185 Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 71/179 (39%), Positives = 112/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + + +M ++ LK+++ +RTGR +LD V+VE +GS VP++QV +VT+L+ R + Sbjct: 7 KTAESKMQRSLEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVGSVTLLDARTIG 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V ++ M A +E+ I +SNLGLNP G ++R+P+P TEERR L+KV A AE+ ++ Sbjct: 67 VKPFESGMAAKIEKAIRDSNLGLNPASVGDLIRVPMPMLTEERRKDLIKVVRAEAEEGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RN+RRD DH+KK K + SED E +QK+TD D K++++M Sbjct: 127 SIRNVRRDANDHIKKLLKDKEVSEDEARRGEEAVQKLTDKYTAEADKILAAKEEDLMAV 185 >gi|256824967|ref|YP_003148927.1| ribosome recycling factor [Kytococcus sedentarius DSM 20547] gi|256688360|gb|ACV06162.1| ribosome recycling factor [Kytococcus sedentarius DSM 20547] Length = 186 Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 58/180 (32%), Positives = 101/180 (56%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +M I +DM +RTGR M + V+ YG+ PL Q+A+ V E R + Sbjct: 7 LAEAQQKMDKAIEVAHEDMADIRTGRAHAGMFSKIMVDYYGAPTPLQQLASFQVPEARTI 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V +DK ++++E+ + ES+LG+NP +G +R +P TEERR +K+A E ++ Sbjct: 67 LVQPFDKSAMSAIEKALRESDLGVNPSNDGNQIRCVLPALTEERRKEYIKLAKGKGEDAR 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+RNIRR +H+ K K G+ ED A E +++ +T +++ + K+ E++ Sbjct: 127 VSLRNIRRAAKEHIDKLVKDGEIGEDEGARGEKELEALTKKHTDQVETILKAKETELLEV 186 >gi|227890626|ref|ZP_04008431.1| ribosome recycling factor, RRF [Lactobacillus salivarius ATCC 11741] gi|301300274|ref|ZP_07206483.1| ribosome recycling factor [Lactobacillus salivarius ACS-116-V-Col5a] gi|227867564|gb|EEJ74985.1| ribosome recycling factor, RRF [Lactobacillus salivarius ATCC 11741] gi|300852115|gb|EFK79790.1| ribosome recycling factor [Lactobacillus salivarius ACS-116-V-Col5a] Length = 187 Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 121/179 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +++M L++++ +R GR + S+L+ + VE YG+ PLNQ+A ++V E R+L Sbjct: 8 IKEAQEKMTKAEDSLRRELGNIRAGRANASLLNRINVEYYGAPTPLNQMAQISVPEARVL 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + ++E I S+LG+ P+ +G +R+ +P+ TEERR L K A +E K Sbjct: 68 LVTPYDKSSLKNIEHAIMASDLGIAPMNDGTAIRLVIPQLTEERRKELAKQVKAVSETGK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRNIRRD MD LKK++K+G +ED + LEN QK+TD +IKNID E+K+KE++ Sbjct: 128 VAVRNIRRDMMDALKKAQKNGDLTEDDLRDLENQAQKVTDESIKNIDKITEDKEKEVLE 186 >gi|29654680|ref|NP_820372.1| ribosome recycling factor [Coxiella burnetii RSA 493] gi|161830368|ref|YP_001597227.1| ribosome recycling factor [Coxiella burnetii RSA 331] gi|190569464|ref|ZP_03022332.1| ribosome recycling factor [Bacillus anthracis Tsiankovskii-I] gi|34924915|sp|Q83BV4|RRF_COXBU RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|189044053|sp|A9N8Q7|RRF_COXBR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|29541948|gb|AAO90886.1| ribosome recycling factor [Coxiella burnetii RSA 493] gi|161762235|gb|ABX77877.1| ribosome recycling factor [Coxiella burnetii RSA 331] gi|190559424|gb|EDV13441.1| ribosome recycling factor [Bacillus anthracis Tsiankovskii-I] Length = 185 Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 70/186 (37%), Positives = 115/186 (61%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N +I+ + K RM ++ LK ++ LRT R PS+L+ +KV+ Y PL+QVA++ + Sbjct: 2 INDIIN--DSKSRMEKSLGSLKTELAKLRTCRAHPSLLEHIKVDYYNVETPLSQVASIAI 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 PR L ++ W+K MV +E+ I +++LGLNP G V+R+P+P TEERR L +V Sbjct: 60 ENPRTLSITPWEKNMVGPIEKAIQKADLGLNPATVGMVIRVPLPPLTEERRKELARVVRE 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE +++++RNIRR+ + LK+ K + SED + IQK+TD+ I +D +K+ Sbjct: 120 EAEHARVAIRNIRREANNDLKELMKEKEISEDEERRAQTAIQKLTDAQIAEVDKMASQKE 179 Query: 181 KEIMHF 186 ++M Sbjct: 180 ADLMAV 185 >gi|116492646|ref|YP_804381.1| ribosome recycling factor [Pediococcus pentosaceus ATCC 25745] gi|122265890|sp|Q03FT3|RRF_PEDPA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|116102796|gb|ABJ67939.1| ribosome recycling factor [Pediococcus pentosaceus ATCC 25745] Length = 186 Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 76/184 (41%), Positives = 120/184 (65%), Gaps = 2/184 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 N++I Q +++M + L++D+ ++R GR + S+LD V V+ YG+ PLNQ+A++T+ Sbjct: 4 NEII--QKAEEKMQKAQNVLERDLGSIRAGRANASLLDKVSVDYYGAPTPLNQMASITIP 61 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 EPR+L+V+ +DK ++ +E+ I S+LG+NP +G +R+ VP+ TEE R L K A Sbjct: 62 EPRVLLVTPYDKSVLNDIEQAILMSDLGINPANDGSAIRLVVPQLTEETRKDLAKNVKAE 121 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 EK+K++VRNIRRD MD LKK+ K+G ++D LE Q TD IK +D K+K Sbjct: 122 GEKAKVAVRNIRRDAMDTLKKANKNGDYNDDEFHDLEKQTQDSTDKAIKVVDEIVANKEK 181 Query: 182 EIMH 185 E++ Sbjct: 182 EVLE 185 >gi|313901478|ref|ZP_07834931.1| ribosome recycling factor [Thermaerobacter subterraneus DSM 13965] gi|313468252|gb|EFR63713.1| ribosome recycling factor [Thermaerobacter subterraneus DSM 13965] Length = 184 Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 69/180 (38%), Positives = 112/180 (62%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ ++RM + ++++ +R GR +P++L+ ++V+ YG+ +P++Q+A +T EPRML Sbjct: 6 LRETRERMEARVENFRRELAGVRAGRATPALLEKIRVDYYGTPMPIHQLATITAPEPRML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV WDK ++ +ER I +S+LG+NP +GQV+RI +P TEE R LVK AE+ + Sbjct: 66 VVQPWDKGVMGEIERAIAKSDLGVNPSSDGQVIRIVLPPLTEETRNELVKRVRKMAEEER 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RR + LK G SED + + +Q++TD I ID K+KEI Sbjct: 126 VAVRNLRRQANEDLKDLEDEG-FSEDEIRRAQEKVQELTDRIIARIDELLAAKEKEIREV 184 >gi|220931612|ref|YP_002508520.1| ribosome recycling factor [Halothermothrix orenii H 168] gi|254809515|sp|B8CW56|RRF_HALOH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|219992922|gb|ACL69525.1| ribosome recycling factor [Halothermothrix orenii H 168] Length = 185 Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 79/179 (44%), Positives = 117/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N K +M + K D+ T+RTGR PS+++ + V+ YG+ P+ Q+A V E R LV Sbjct: 7 KNAKQKMEKVLEATKHDLNTVRTGRARPSLVENIMVDYYGTQTPIQQMAKVVAPEARQLV 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + WDK ++ S+E+ I +SNLGLNP +G V+RI +P+ TEERR LVKVAH AEK +I Sbjct: 67 IEPWDKSVIESIEKAILKSNLGLNPSNDGNVIRINIPQLTEERRKELVKVAHEKAEKGRI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRR+ D LK+ K+ + SED + IQ++TD+ I ID E+K+++IM Sbjct: 127 AIRNIRREANDELKEMEKNSEISEDNYHRGLDMIQELTDTYIDKIDKMLEDKEQDIMEV 185 >gi|145593876|ref|YP_001158173.1| ribosome recycling factor [Salinispora tropica CNB-440] gi|189044073|sp|A4X4J5|RRF_SALTO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|145303213|gb|ABP53795.1| ribosome recycling factor [Salinispora tropica CNB-440] Length = 185 Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 60/180 (33%), Positives = 106/180 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M I K++ +RTGR + +M + ++ YGS PL Q+A++ V EPRM+ Sbjct: 6 LLEAEEKMERAIEHAKEEFGAIRTGRANAAMFSKIVIDYYGSPTPLPQMASIGVPEPRMV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D ++E+ I +S+LG+NP EG LRI +P+ TEERR ++KVA E++K Sbjct: 66 IIKPYDTSQTNAMEKAIRDSDLGVNPNNEGNQLRILLPQMTEERRREMIKVARHKGEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RR + L + K+G+ ED E ++ +T + +D + K+ E++ Sbjct: 126 VAVRNVRRKAKEELDRLVKAGEVGEDDGRRAEKELDDLTQRFVGTVDELIKHKEAELLEV 185 >gi|284928759|ref|YP_003421281.1| ribosome recycling factor [cyanobacterium UCYN-A] gi|284809218|gb|ADB94923.1| ribosome recycling factor [cyanobacterium UCYN-A] Length = 181 Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 115/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++KD M T+ +K TLRTGR + ++LD V V+ YGS V L +AN+ + L Sbjct: 2 LNDLKDSMKKTVESTQKSFNTLRTGRANSAILDRVTVDYYGSEVQLKSLANINTPDATTL 61 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D+ + +E+ I+ S++GL P +GQV+R+ +P T+ERR LVK+A+ AE+ K Sbjct: 62 LIQPFDRGSIGQIEKAINMSDVGLTPNNDGQVIRLNIPPLTKERRKELVKIANKMAEEGK 121 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD ++ ++K K G ASED +L+++IQK+TD K ID K K+IM Sbjct: 122 VAIRNIRRDAIETVRKQEKDGDASEDESRNLQDNIQKVTDEFTKKIDELLTIKNKDIMTV 181 >gi|256823124|ref|YP_003147087.1| ribosome recycling factor [Kangiella koreensis DSM 16069] gi|256796663|gb|ACV27319.1| ribosome recycling factor [Kangiella koreensis DSM 16069] Length = 185 Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 111/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ RM +I K D+ +RTGR PS+L+ + V YG P++QVA++ V E R LV Sbjct: 7 KDADQRMDKSIESYKGDLAKVRTGRAHPSLLEHIMVPYYGVDTPISQVASIGVQEGRTLV 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + ++DK + + E+ I +S+LGL P V GQV+RI +P +EERR +KV AE +K+ Sbjct: 67 LQIFDKGAIEATEKAILKSDLGLTPNVAGQVIRIALPPLSEERRKEFIKVVKMEAENAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD + LK+ K + SED + E+ IQK+TD+ I ID EK+ E+M Sbjct: 127 AVRNIRRDANNSLKELEKEKEISEDDLRRAEDLIQKLTDTKIARIDEILAEKETELMEI 185 >gi|297559222|ref|YP_003678196.1| ribosome recycling factor [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843670|gb|ADH65690.1| ribosome recycling factor [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 185 Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 64/180 (35%), Positives = 109/180 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M ++ K+D T+RTGR +P+ + + V+ YG+ P+NQ+A+ +V EPRM+ Sbjct: 6 LLEAEEKMEKAVTVAKEDFATIRTGRPTPATFNKITVDYYGARTPINQLASFSVPEPRMV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+S +D + I S+LG+NP +GQV+R+ PE +EERR VKVA AE SK Sbjct: 66 VISPFDVNSRTDIINAIRNSDLGVNPSDDGQVIRVVFPELSEERRKEYVKVARTKAEDSK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+RN+RR D +K+ KSG ED + ++ +++ + ++D + K+ E++ Sbjct: 126 VSIRNVRRRAKDTFEKAVKSGDIGEDEAHRAQAELDELSSKYVASVDELLKHKESELLEV 185 >gi|238784883|ref|ZP_04628883.1| Ribosome-recycling factor [Yersinia bercovieri ATCC 43970] gi|238796611|ref|ZP_04640118.1| Ribosome-recycling factor [Yersinia mollaretii ATCC 43969] gi|238714200|gb|EEQ06212.1| Ribosome-recycling factor [Yersinia bercovieri ATCC 43970] gi|238719589|gb|EEQ11398.1| Ribosome-recycling factor [Yersinia mollaretii ATCC 43969] Length = 185 Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 69/166 (41%), Positives = 110/166 (66%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM + + + +RTGR SPS+LD ++VE YG+ PL Q+AN+ V + R L Sbjct: 7 KDTEVRMEKCLEAFQNHISKIRTGRASPSILDGIQVEYYGTATPLRQLANIVVEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ + A+VE+ I S+LGLNP G V+R+P+P TEERR L+KV A AE+ ++ Sbjct: 67 LTVFDRSLSAAVEKAIMTSDLGLNPSSAGTVIRVPLPALTEERRKDLIKVVRAEAEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNID 173 S+RN+RRD + +K K + SED ++++QK+TD+ IK +D Sbjct: 127 SIRNVRRDANEKVKALLKDKEISEDEDRRSQDEVQKLTDAFIKKVD 172 >gi|160940991|ref|ZP_02088330.1| hypothetical protein CLOBOL_05885 [Clostridium bolteae ATCC BAA-613] gi|158436081|gb|EDP13848.1| hypothetical protein CLOBOL_05885 [Clostridium bolteae ATCC BAA-613] Length = 183 Score = 228 bits (583), Expect = 3e-58, Method: Composition-based stats. Identities = 73/181 (40%), Positives = 112/181 (61%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 +L+ +D+M T+ L D T+R GR +P +LD +KV+ YG+ PL QV NV+V E RM Sbjct: 3 ELKVYEDKMNKTLDVLLSDYGTIRAGRANPHVLDKIKVDYYGTPTPLQQVGNVSVPEARM 62 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 +V+ W+K ++ +E+ I S LG+NP +G +R+ PE TEERR + K + + Sbjct: 63 IVIQPWEKSLLKPIEKAILTSELGINPTNDGNCIRLVFPEMTEERRKEVSKDVKKKGDNA 122 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 K+++RNIRRD + KK+ K+G SED + + +QK+TD ++ +D EEK KEIM Sbjct: 123 KVALRNIRRDANEAFKKAEKAGDISEDDLTEMTEKMQKLTDKMVEKVDKAVEEKTKEIMT 182 Query: 186 F 186 Sbjct: 183 V 183 >gi|73748219|ref|YP_307458.1| ribosome recycling factor [Dehalococcoides sp. CBDB1] gi|289432268|ref|YP_003462141.1| ribosome recycling factor [Dehalococcoides sp. GT] gi|123620145|sp|Q3ZZC4|RRF_DEHSC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|73659935|emb|CAI82542.1| ribosome recycling factor [Dehalococcoides sp. CBDB1] gi|288945988|gb|ADC73685.1| ribosome recycling factor [Dehalococcoides sp. GT] Length = 185 Score = 228 bits (583), Expect = 3e-58, Method: Composition-based stats. Identities = 61/186 (32%), Positives = 118/186 (63%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ LQ + +M ++ L +++ +RTGR SP++++ ++VE G P+N +AN++ Sbjct: 2 INEI--LQKSEKKMSASLDVLLQELSGIRTGRSSPALVEHIRVEYAGVPTPINHLANISA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 +PR + + WD+ ++++E+ I +S+LGL P +G ++R+ +P +EERR ++K+ + Sbjct: 60 PDPRYITIQPWDRSCLSAIEKAIMKSDLGLMPNNDGNIIRLNIPPLSEERRQEMIKIVNK 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E+ KI++RN+RRD MD +KK K+ + S+D + + +QKITD+ I D +K+ Sbjct: 120 RLEEDKIAMRNVRRDAMDEMKKLEKAKEISQDDLKRGSDQLQKITDNFIAKADKLGADKE 179 Query: 181 KEIMHF 186 E+ Sbjct: 180 AELRQV 185 >gi|332970849|gb|EGK09828.1| ribosome recycling factor [Psychrobacter sp. 1501(2011)] Length = 184 Score = 228 bits (582), Expect = 3e-58, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 113/179 (63%), Gaps = 1/179 (0%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM ++ L+ +RTGR P ML V V YG+ PLNQVA+V V + R L+ Sbjct: 7 KDGEARMKKSLEALENAFSKVRTGRAHPGMLSGVMVNYYGADTPLNQVASVNVEDSRTLL 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +++ MV +V++ I E++LGLNP+ V+R+P+P TEE R + K+A AE S++ Sbjct: 67 VQPFERSMVQAVDKAIREADLGLNPMTA-DVIRVPMPALTEETRRDMQKLARGEAENSRV 125 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRN+RRD ++ +K+ K + SED +DIQK+TD I +IDS E K+KE+M Sbjct: 126 SVRNVRRDMLNDVKELAKEKEISEDEERRASDDIQKLTDKYIASIDSKLEAKEKELMEV 184 >gi|318041138|ref|ZP_07973094.1| ribosome recycling factor [Synechococcus sp. CB0101] Length = 179 Score = 228 bits (582), Expect = 3e-58, Method: Composition-based stats. Identities = 62/178 (34%), Positives = 107/178 (60%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 ++ M ++ ++ T+RTGR + S+LD ++VE YG+ PL +A ++ + + + Sbjct: 2 ELEASMRKSVDSTQRTFNTIRTGRANASLLDKIQVEYYGADTPLKSLATISTPDSSTIQL 61 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 +D ++ +E+ I S+LGL +G+V+RI +P TE+RR L K+A YAE+ K++ Sbjct: 62 QPFDASSLSLIEKAISMSDLGLTCNNDGKVIRINIPPLTEDRRKDLCKLAAKYAEEGKVA 121 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +RNIRRD +D +KK K G+ SED ++ +QK+TD I I+ EK+ +I+ Sbjct: 122 LRNIRRDAIDKVKKQEKEGEFSEDQSRDEQDKVQKLTDKFIAEIEKLLAEKEADILKV 179 >gi|28378683|ref|NP_785575.1| ribosome recycling factor [Lactobacillus plantarum WCFS1] gi|254556881|ref|YP_003063298.1| ribosome recycling factor [Lactobacillus plantarum JDM1] gi|300768196|ref|ZP_07078101.1| ribosome recycling factor [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180824|ref|YP_003924952.1| ribosome recycling factor [Lactobacillus plantarum subsp. plantarum ST-III] gi|34924944|sp|Q88VJ7|RRF_LACPL RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|28271519|emb|CAD64424.1| ribosome recycling factor [Lactobacillus plantarum WCFS1] gi|254045808|gb|ACT62601.1| ribosome recycling factor [Lactobacillus plantarum JDM1] gi|300494260|gb|EFK29423.1| ribosome recycling factor [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308046315|gb|ADN98858.1| ribosome recycling factor [Lactobacillus plantarum subsp. plantarum ST-III] Length = 187 Score = 228 bits (582), Expect = 3e-58, Method: Composition-based stats. Identities = 69/179 (38%), Positives = 119/179 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ ++RM + L++++ +R GR + S+L+ + + YG+ PLNQ+A +TV EPR+L Sbjct: 8 LKEAQERMKKAEAALQRELGNIRAGRANASLLNRISADYYGAQTPLNQMAAITVPEPRVL 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + +E+ I S+LG++P +G +R+ +P+ TEERR L K A E++K Sbjct: 68 MVTPFDKSALKEIEKAILASDLGISPANDGSAIRLVIPQLTEERRKELAKDVKAEGERAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRN+RRD M+ LKK K G+ ++D + LE+ QK+TD K++D+ +K+KEI+ Sbjct: 128 VAVRNVRRDAMEALKKGHKDGQFTDDQLHQLEDQAQKLTDQAGKDVDAIVADKEKEILE 186 >gi|257784511|ref|YP_003179728.1| ribosome recycling factor [Atopobium parvulum DSM 20469] gi|257473018|gb|ACV51137.1| ribosome recycling factor [Atopobium parvulum DSM 20469] Length = 181 Score = 228 bits (582), Expect = 3e-58, Method: Composition-based stats. Identities = 68/179 (37%), Positives = 101/179 (56%), Gaps = 3/179 (1%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 K M I LK + +RTGR +P LD +KV+ YG P++Q+A + V E ML+ Sbjct: 6 DKAKQSMEKCIEALKNNFGRVRTGRANPHALDHIKVDYYGQPTPISQLAAIKVPEASMLL 65 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V WDK + S+E+ I S+LG+ P +G +R+P P TEERR L K AE++++ Sbjct: 66 VEPWDKTALKSIEKAIESSDLGITPSNDGSAIRLPFPMPTEERRRELAKECSQIAEEARV 125 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD + + + SED +N IQK+TD+ I I+S + K EIM Sbjct: 126 AIRNVRRDINGKI---ERDEELSEDDQKREKNGIQKLTDTYIAQIESLLKTKTSEIMEI 181 >gi|111225137|ref|YP_715931.1| ribosome recycling factor [Frankia alni ACN14a] gi|123043981|sp|Q0RDQ6|RRF_FRAAA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|111152669|emb|CAJ64410.1| ribosome releasing factor [Frankia alni ACN14a] Length = 185 Score = 228 bits (582), Expect = 3e-58, Method: Composition-based stats. Identities = 60/180 (33%), Positives = 113/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++M +S K+D +RTGR++P++ + V+ YG+ P+ Q+A+ + EPRM+ Sbjct: 6 LLDAEEKMEKAVSVAKEDFANIRTGRITPAVFSKIVVDYYGAPTPVQQLASFHIPEPRMV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK +AS+E+ + +S+LG+NP +G ++RI PE +E+RR LVKVA + AE+++ Sbjct: 66 IITPYDKSSLASIEKAVRDSDLGVNPSNDGTIIRIVFPELSEQRRRDLVKVARSKAEEAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+RN+RR D + + + G A ED E D+ + T + +D K+ +++ Sbjct: 126 VSIRNVRRHAKDGIDRIVRDGDAGEDEGRRAEKDLDEATHRYVGQVDELLRLKEADLLSV 185 >gi|292670556|ref|ZP_06603982.1| ribosome recycling factor [Selenomonas noxia ATCC 43541] gi|292647722|gb|EFF65694.1| ribosome recycling factor [Selenomonas noxia ATCC 43541] Length = 185 Score = 228 bits (582), Expect = 3e-58, Method: Composition-based stats. Identities = 67/180 (37%), Positives = 113/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++ M I L+++ +LR GR +P++LD V V YG+ +NQ+A VTV EP M+ Sbjct: 6 LSKHEESMNKAIDVLRREFSSLRAGRATPNLLDKVMVPYYGTPTSVNQLAKVTVPEPHMI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V++ W+KE++ +E I +S+LGL+P +G V+R+ VP+ T+ERR L+K E++K Sbjct: 66 VITPWEKEILHDIEIAISKSDLGLSPNSDGTVIRLAVPQPTQERRKELIKTVGKKTEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD + +KK K + +ED ++ +QK+ D +K ++ K+KE+M Sbjct: 126 VALRNIRRDANEAIKKLEKDKEINEDESKRGQDSVQKLVDKFVKQMEEMRASKEKEVMEI 185 >gi|238792752|ref|ZP_04636383.1| Ribosome-recycling factor [Yersinia intermedia ATCC 29909] gi|238727860|gb|EEQ19383.1| Ribosome-recycling factor [Yersinia intermedia ATCC 29909] Length = 185 Score = 228 bits (582), Expect = 3e-58, Method: Composition-based stats. Identities = 70/166 (42%), Positives = 109/166 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM + + +RTGR SPS+LD ++VE YG+ PL Q+AN+ V + R L Sbjct: 7 KDTEVRMEKCFEAFQNHISKIRTGRASPSILDGIQVEYYGTATPLRQLANIVVEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ + A+VE+ I S+LGLNP G V+R+P+P TEERR L+KV A AE+ ++ Sbjct: 67 LTVFDRSLSAAVEKAIMTSDLGLNPSSAGTVIRVPLPALTEERRKDLIKVVRAEAEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNID 173 S+RN+RRD + +K K + SED ++D+QK+TD+ IK +D Sbjct: 127 SIRNVRRDANEKVKALLKDKEISEDEDRRSQDDVQKLTDAFIKKVD 172 >gi|116618296|ref|YP_818667.1| ribosome recycling factor [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|227431621|ref|ZP_03913657.1| ribosome recycling factor [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|122271504|sp|Q03WX8|RRF_LEUMM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|116097143|gb|ABJ62294.1| ribosome recycling factor [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|227352613|gb|EEJ42803.1| ribosome recycling factor [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 181 Score = 228 bits (582), Expect = 3e-58, Method: Composition-based stats. Identities = 78/182 (42%), Positives = 118/182 (64%), Gaps = 3/182 (1%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 DL N K+RM L++++ +RTGR +P++L+ V+VE YG+ PLNQVA+++V E R Sbjct: 3 FDLTNAKERMKGAQEALQRELANIRTGRANPNILNRVEVEYYGAMTPLNQVASISVPEAR 62 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 +L+++ +DK + ++ I+ S+LGLNP +G ++R+ +P+ TEERR L K A AEK Sbjct: 63 ILLITPFDKSALEAIVHAINVSDLGLNPASDGNIVRLAIPQMTEERRKELAKEVKAEAEK 122 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +K+SVRN+RRD MD +K K ED E+ QK+TD IK ID EK+KE++ Sbjct: 123 AKVSVRNVRRDIMDDIK---KDKDMPEDDARKAEDQTQKLTDENIKAIDEIAAEKEKELL 179 Query: 185 HF 186 Sbjct: 180 TI 181 >gi|238650359|ref|YP_002916211.1| ribosome recycling factor [Rickettsia peacockii str. Rustic] gi|259494554|sp|C4K0R2|RRF_RICPU RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238624457|gb|ACR47163.1| ribosome recycling factor [Rickettsia peacockii str. Rustic] Length = 186 Score = 228 bits (582), Expect = 3e-58, Method: Composition-based stats. Identities = 85/179 (47%), Positives = 123/179 (68%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N++++M + L ++ LRTGR S ++LD V VEAYGS +PL+QVA+++ + R + Sbjct: 8 KNLQEKMEKALKVLDHELKGLRTGRASVNLLDSVTVEAYGSKMPLSQVASLSTPDARTIN 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V VWDK MV+SVE+GI +NLGL P +GQ++R+P+P TEERR LVK+AH Y E +KI Sbjct: 68 VQVWDKSMVSSVEKGITIANLGLTPATDGQLIRLPIPALTEERRTELVKLAHKYGEDTKI 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RNIRRDG + LKK K ++D SL +QK+TD +DS ++K++EIM Sbjct: 128 SLRNIRRDGNEALKKLEKDNVIAKDEHHSLSEQVQKLTDDYSSKVDSVIKQKEQEIMTV 186 >gi|291544887|emb|CBL17996.1| ribosome recycling factor [Ruminococcus sp. 18P13] Length = 184 Score = 228 bits (582), Expect = 3e-58, Method: Composition-based stats. Identities = 66/186 (35%), Positives = 113/186 (60%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 MN+ I L +++M + L + ++R GR +P +LD V V+ YG+ P+NQ+A VTV Sbjct: 1 MNEHIKL--AEEKMDKALQHLAAEFASIRAGRANPGILDKVTVDYYGTPTPVNQMAAVTV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R+L++ WD M+ ++ + + S++G+ P +G+V+R+ P+ TE+RR + K Sbjct: 59 SEARILLIQPWDASMIKAINKALLASDIGITPTDDGKVIRLVFPQLTEDRRKEICKSIKK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 Y +++K++VRN+RRD M+ K +K+ + +ED + E IQ ITD DS +K+ Sbjct: 119 YGDETKVAVRNVRRDTMEKFKAMKKNSEITEDELKDAEKKIQNITDKFCTQTDSMVSDKE 178 Query: 181 KEIMHF 186 KE+M Sbjct: 179 KEVMSL 184 >gi|332362392|gb|EGJ40192.1| ribosome recycling factor [Streptococcus sanguinis SK1056] Length = 185 Score = 228 bits (582), Expect = 3e-58, Method: Composition-based stats. Identities = 71/180 (39%), Positives = 115/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+RM + L ++ ++R GR + S+LD + VE YG PLNQ+A++T+ E R+L Sbjct: 6 VEKAKERMTHSHQSLAREFGSIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + +ER ++ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LVTPFDKSSIKDIERALNASDLGITPASDGSVIRLVIPALTEETRRDLAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD MD KK K+ + +ED + +LE DIQK+TD +K+ID K+KE++ Sbjct: 126 VAIRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDEMTVNKEKELLEV 185 >gi|325282615|ref|YP_004255156.1| Ribosome-recycling factor [Deinococcus proteolyticus MRP] gi|324314424|gb|ADY25539.1| Ribosome-recycling factor [Deinococcus proteolyticus MRP] Length = 183 Score = 228 bits (582), Expect = 3e-58, Method: Composition-based stats. Identities = 71/177 (40%), Positives = 116/177 (65%), Gaps = 3/177 (1%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RMG +I L+ ++ LRTGR +P +L V VE +GS +P++QVA++ + R L Sbjct: 9 KDARERMGKSIEALESNLGVLRTGRANPGILKKVMVEYFGSTMPIDQVASINAPDARTLT 68 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+ WD+ + +E+ I +S+LGLNP +G ++ I +P TEERR +VK A +YAE+++I Sbjct: 69 VTPWDRGALNPIEKAIRDSDLGLNPNNKGDMIFISIPALTEERRKEMVKNAKSYAEEARI 128 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 S+RN+R+ +D +KK ED V E ++QKITD +K +D F+ K+ EI+ Sbjct: 129 SIRNVRKSALDEVKKL---DDLGEDEVKRAEAEVQKITDEYVKKVDEVFDRKEAEIL 182 >gi|255067012|ref|ZP_05318867.1| ribosome recycling factor [Neisseria sicca ATCC 29256] gi|255048837|gb|EET44301.1| ribosome recycling factor [Neisseria sicca ATCC 29256] Length = 185 Score = 228 bits (582), Expect = 3e-58, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + + +M ++ LK+++ +RTGR +LD V+VE +GS VP++QVANVT+L+ R + Sbjct: 7 KTAESKMQRSVEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVANVTLLDARTIG 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V ++ M A VE+ I +SNLGLNP G ++R+P+P TEERR L+KV + AE+ ++ Sbjct: 67 VKPFESNMAAKVEKAIRDSNLGLNPAAVGDLIRVPMPMLTEERRKDLIKVVRSEAEEGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RN+RRD DH+KK K + SED E +QK+TD I D K++++M Sbjct: 127 SIRNVRRDANDHIKKLLKDKEISEDEARRGEEAVQKLTDKYIAEADKTLAAKEEDLMAI 185 >gi|163791595|ref|ZP_02185996.1| ribosome recycling factor [Carnobacterium sp. AT7] gi|159873144|gb|EDP67247.1| ribosome recycling factor [Carnobacterium sp. AT7] Length = 185 Score = 228 bits (582), Expect = 3e-58, Method: Composition-based stats. Identities = 75/180 (41%), Positives = 124/180 (68%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 LQ ++M T S L++++ T+R GR + +LD + V YG+ PL Q+A ++V EPR+L Sbjct: 6 LQTTNEKMVKTESALQRELGTIRAGRANAGLLDRINVVYYGAPTPLKQLAQISVPEPRVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK ++ +E+ I +S+LG++P +G V+R+ +P+ TEERR L K AE +K Sbjct: 66 MITPFDKTSISDIEKSIMQSDLGISPANDGNVIRLVIPQLTEERRKELAKKVGKEAENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +SVRNIRR+ MD LKK+ K+ + ++D + + E DIQKIT+ ++KNID+ EK+KE++ Sbjct: 126 VSVRNIRREAMDELKKAEKNNEITQDDLRTFEEDIQKITNESVKNIDAIAAEKEKELLDV 185 >gi|223994729|ref|XP_002287048.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220978363|gb|EED96689.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 179 Score = 228 bits (582), Expect = 3e-58, Method: Composition-based stats. Identities = 70/175 (40%), Positives = 116/175 (66%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 + ++RM T++ L +++ T+RTGR +P+MLD V+ + YG+ PL+Q+A ++V + L V Sbjct: 2 DCEERMDKTMASLAENLATIRTGRANPNMLDRVECDYYGATTPLSQMATISVPSSQQLQV 61 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 S +DK ++ +E+ I S LG P +G V+RI +P+ TEERR L+K + E++K++ Sbjct: 62 SPFDKSVLNDIEKAIIYSGLGFTPNNDGSVIRINIPQLTEERRKELLKQCKSIGEEAKVA 121 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +RNIRRDG+D++KK K+G +D ++ IQK TD +K ID +K+KE+ Sbjct: 122 IRNIRRDGVDNIKKMEKNGDLGKDQALDGQDAIQKSTDEHVKMIDETVAKKEKEV 176 >gi|15892120|ref|NP_359834.1| ribosome recycling factor [Rickettsia conorii str. Malish 7] gi|20139894|sp|Q92J72|RRF_RICCN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|15619247|gb|AAL02735.1| ribosome recycling factor [Rickettsia conorii str. Malish 7] Length = 186 Score = 228 bits (582), Expect = 3e-58, Method: Composition-based stats. Identities = 86/179 (48%), Positives = 124/179 (69%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N++++M + L ++ LRTGR S ++LD V VEAYGS +PL+QVA+++ + R + Sbjct: 8 KNLQEKMEKALKVLDHELKGLRTGRASVNLLDSVTVEAYGSKMPLSQVASLSTPDARTIN 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V VWDK MV+SVE+GI +NLGL P +GQ++R+P+P TEERR ALVK+AH Y E +KI Sbjct: 68 VQVWDKSMVSSVEKGITIANLGLTPATDGQLIRLPIPALTEERRTALVKLAHKYGEDTKI 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RNIRRDG + LKK K ++D SL +QK+TD +DS ++K++EIM Sbjct: 128 SLRNIRRDGNEALKKLEKDNVIAKDEHHSLSEQVQKLTDDYSSKVDSVIKQKEQEIMTV 186 >gi|304312451|ref|YP_003812049.1| Ribosome recycling factor [gamma proteobacterium HdN1] gi|301798184|emb|CBL46406.1| Ribosome recycling factor [gamma proteobacterium HdN1] Length = 185 Score = 228 bits (582), Expect = 3e-58, Method: Composition-based stats. Identities = 64/179 (35%), Positives = 110/179 (61%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM + L++ + +RTGR +P++LD VKV+ YG+ PL QVA++ V + R L Sbjct: 7 KDTEARMKKCLEALEQALRKVRTGRANPAILDGVKVKYYGTDTPLKQVASINVEDSRTLS 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S +D+ + +E+ I +++LGLNP G V+R+P+P T+E R + K+A AE +++ Sbjct: 67 ISAFDRGAIPDIEKAIMKADLGLNPSTSGVVIRVPMPALTQETRKEMTKIARNEAEHARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRN+RRD +K+ K + ED E+++QK+TD I +D K+ ++M Sbjct: 127 SVRNVRRDANADIKELLKEKQIGEDEARKGEDEVQKLTDRYIVEVDKILTAKEADLMQI 185 >gi|168045141|ref|XP_001775037.1| predicted protein [Physcomitrella patens subsp. patens] gi|162673624|gb|EDQ60144.1| predicted protein [Physcomitrella patens subsp. patens] Length = 264 Score = 228 bits (582), Expect = 3e-58, Method: Composition-based stats. Identities = 68/181 (37%), Positives = 119/181 (65%), Gaps = 1/181 (0%) Query: 3 QVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLE 62 ++I++ + +RM ++ K T+RTGR +PS+LD V+VE YG++V L +A +T + Sbjct: 82 ELIEM-DAMERMEKSLEATKASFNTVRTGRATPSLLDRVQVEYYGTNVILKSIAQITTPD 140 Query: 63 PRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 ++++ +DK + S+E+ + +S++G+ P +G V+R+ VP+ T +RR L+K+ + Sbjct: 141 GSTILITPFDKSSLTSIEKSLVKSDIGITPNNDGNVIRLNVPQLTADRRKELLKLVSKLS 200 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 E+ K+++RN+RRD + +K K K SED V L DIQK+TD IK ID+ F++K+KE Sbjct: 201 EEGKVAIRNVRRDAIKSYEKLEKEKKLSEDNVKDLSGDIQKMTDDYIKKIDALFKQKEKE 260 Query: 183 I 183 + Sbjct: 261 L 261 >gi|289643662|ref|ZP_06475775.1| ribosome recycling factor [Frankia symbiont of Datisca glomerata] gi|289506553|gb|EFD27539.1| ribosome recycling factor [Frankia symbiont of Datisca glomerata] Length = 185 Score = 227 bits (581), Expect = 3e-58, Method: Composition-based stats. Identities = 61/180 (33%), Positives = 111/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M ++ K+D +RTGR++PS+ V V+ YG+ P+NQ+A+ + EPRM+ Sbjct: 6 LLEAEEKMDKAVAVAKEDFANIRTGRITPSVFSKVLVDYYGAPTPVNQLASFHIPEPRMV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK +A++E+ + +S+LG+NP +G ++R PE +E+RR L KVA AE+++ Sbjct: 66 IITPYDKGSLAAIEKAVRDSDLGVNPSNDGTIIRCLFPELSEQRRRDLAKVARTKAEEAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 IS+RN+RR D + + + G+A ED E D+ + T + +D K+ E++ Sbjct: 126 ISIRNVRRHSKDAIDRIVRDGEAGEDEGRRGEKDLDEATHRYVSQVDELLRHKESELLAV 185 >gi|26988326|ref|NP_743751.1| ribosome recycling factor [Pseudomonas putida KT2440] gi|148549389|ref|YP_001269491.1| ribosome recycling factor [Pseudomonas putida F1] gi|34924941|sp|Q88MH7|RRF_PSEPK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166231212|sp|A5W847|RRF_PSEP1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|24983074|gb|AAN67215.1|AE016348_7 ribosome recycling factor [Pseudomonas putida KT2440] gi|148513447|gb|ABQ80307.1| ribosome recycling factor [Pseudomonas putida F1] gi|313500238|gb|ADR61604.1| Frr [Pseudomonas putida BIRD-1] Length = 185 Score = 227 bits (581), Expect = 3e-58, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RMG +I L +++ +RTGR PS+LD VKV A+GS +PLNQVA +TV + R L Sbjct: 7 KDAQERMGKSIEALSRNLAAIRTGRAHPSILDSVKVTAWGSEMPLNQVAAITVEDARTLK 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + DK + A++E+ I S+LGLNP G +R+P+P TEE R K A AE +K+ Sbjct: 67 IVAHDKNLSAAIEKAILTSDLGLNPSSAGTTIRVPMPALTEETRKGYTKQASGVAEDAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD + LKK K + SED ++IQK+TD + +D+ F+ K+K++M Sbjct: 127 AVRNVRRDALADLKKLTKDKEISEDEERRAADEIQKLTDKFVAEVDAAFKAKEKDLMAV 185 >gi|237736212|ref|ZP_04566693.1| ribosome recycling factor [Fusobacterium mortiferum ATCC 9817] gi|229421765|gb|EEO36812.1| ribosome recycling factor [Fusobacterium mortiferum ATCC 9817] Length = 188 Score = 227 bits (581), Expect = 3e-58, Method: Composition-based stats. Identities = 82/176 (46%), Positives = 118/176 (67%), Gaps = 2/176 (1%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 K++MG + K ++R GR + SMLD +KVE YGS +PLNQV +V+ E R+LV+ Sbjct: 10 CKEKMGKAVEATKHKFTSIRAGRANVSMLDGIKVEQYGSEMPLNQVGSVSAPEARLLVID 69 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 WDK ++ +E+ I +NLGL P +G+V+R+ +PE T +RR VK+A + AE K++V Sbjct: 70 PWDKSLIGKIEKAIIAANLGLTPNNDGKVIRLIMPELTADRRKEYVKMAKSEAENGKVAV 129 Query: 130 RNIRRDGMDHLKKSRKSGK--ASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 RNIR+DG + LKK K + SED V +LE +IQK+TD+ IK ID F +K+KEI Sbjct: 130 RNIRKDGNNDLKKLLKDKENPVSEDEVKNLEAEIQKLTDAHIKEIDELFAKKEKEI 185 >gi|163849097|ref|YP_001637141.1| ribosome recycling factor [Chloroflexus aurantiacus J-10-fl] gi|222527070|ref|YP_002571541.1| ribosome recycling factor [Chloroflexus sp. Y-400-fl] gi|189044049|sp|A9WAG2|RRF_CHLAA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|254809502|sp|B9LEM3|RRF_CHLSY RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|163670386|gb|ABY36752.1| ribosome recycling factor [Chloroflexus aurantiacus J-10-fl] gi|222450949|gb|ACM55215.1| ribosome recycling factor [Chloroflexus sp. Y-400-fl] Length = 185 Score = 227 bits (581), Expect = 4e-58, Method: Composition-based stats. Identities = 75/186 (40%), Positives = 116/186 (62%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N VI + + L+ + ++RTGR S ++++ + VEAYG +PLNQ+AN++V Sbjct: 2 LNDVI--SEYEAHLKKATEALRHHLASIRTGRASSALVEHLHVEAYGMTMPLNQLANISV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPR++V+ +D M+ ++E+ I +S+LGLNP +G+V+R+PVP TEERR LVK+ Sbjct: 60 PEPRLIVIQPYDANMIKAIEKAIQQSDLGLNPSNDGRVIRLPVPPLTEERRRELVKMVRH 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E+ KISVRN RRD +D LKK SED + + IQ++TD + +D EK+ Sbjct: 120 RVEEVKISVRNQRRDAIDDLKKLEAEKLISEDELHRGQERIQQLTDRCTRELDQIGAEKE 179 Query: 181 KEIMHF 186 E+M Sbjct: 180 AEVMAV 185 >gi|222152659|ref|YP_002561834.1| ribosome recycling factor [Streptococcus uberis 0140J] gi|254809534|sp|B9DRF1|RRF_STRU0 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|222113470|emb|CAR41195.1| ribosome recycling factor [Streptococcus uberis 0140J] Length = 185 Score = 227 bits (581), Expect = 4e-58, Method: Composition-based stats. Identities = 74/180 (41%), Positives = 112/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ R + L ++ ++R GR + S+LD ++VE YG PLNQ+A++TV E R+L Sbjct: 6 IEKANQRFEQSFQSLSREYASIRAGRANASLLDRIQVEYYGVPTPLNQLASITVPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +DK + +ER I+ S+LG+ P +G V+R+ +P TEE R L K E K Sbjct: 66 LISPFDKSSIKDIERAINASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGENQK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIRRD MD KK K+ + +ED + +LE DIQK TD IK+ID EK+KE++ Sbjct: 126 IAIRNIRRDAMDEAKKQEKNKEITEDELKALEKDIQKATDQAIKHIDGMTSEKEKELLTV 185 >gi|116669931|ref|YP_830864.1| ribosome recycling factor [Arthrobacter sp. FB24] gi|172044060|sp|A0JUP4|RRF_ARTS2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|116610040|gb|ABK02764.1| ribosome recycling factor [Arthrobacter sp. FB24] Length = 185 Score = 227 bits (581), Expect = 4e-58, Method: Composition-based stats. Identities = 64/180 (35%), Positives = 105/180 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L D+M + K+D ++RTGR +P + + V V+ YGS PL Q+A+ V + R + Sbjct: 6 LLEAGDKMDKAVEVAKEDFASIRTGRATPGLYNRVLVDYYGSPTPLQQLASFAVPDARTI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK + +ER + +S +G NP +G V+RI +PE T+ERR VK+ A E +K Sbjct: 66 LITPFDKTALRDIERALSDSEVGANPSNDGNVIRITIPELTKERRKEYVKIVKAKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+RNIRR + L K K G+A ED A E ++ +T + + ID + K+ E++ Sbjct: 126 VSIRNIRRKAKETLDKLVKDGEAGEDEGARGEKELDALTKAHVDGIDDLLKRKEAELLEV 185 >gi|75700577|gb|ABA20253.1| ribosome recycling factor [Anabaena variabilis ATCC 29413] Length = 173 Score = 227 bits (581), Expect = 4e-58, Method: Composition-based stats. Identities = 61/170 (35%), Positives = 103/170 (60%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M T+ ++ T+RTGR + S+LD V V+ YGS PL +AN++ + + + +DK Sbjct: 1 MQHTVEATQRAFNTIRTGRANASLLDKVLVDYYGSPTPLKSLANISTPDATTIQIQPYDK 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 + +E+ I S++GL P +G +R+ +P T +RR LVK+A YAE+ ++++RNIR Sbjct: 61 TSLNIIEKAISLSDVGLTPSNDGSAIRLNIPPLTSDRRKELVKLAAKYAEEGRVAIRNIR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 RD +D ++K K+ + SED ++ +QK+T+ ID EK+K+I Sbjct: 121 RDAIDSIRKQEKNAEVSEDEAKDQQDKLQKLTNKYTARIDELLAEKEKDI 170 >gi|302670318|ref|YP_003830278.1| ribosome recycling factor Frr [Butyrivibrio proteoclasticus B316] gi|302394791|gb|ADL33696.1| ribosome recycling factor Frr [Butyrivibrio proteoclasticus B316] Length = 183 Score = 227 bits (581), Expect = 4e-58, Method: Composition-based stats. Identities = 79/186 (42%), Positives = 118/186 (63%), Gaps = 3/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 MN+ L+ D+M + +L++D+ ++R GR +P +LD +KV+ YG+ PL QV NV+V Sbjct: 1 MNE--KLKAYNDKMQKSFDYLREDLASIRAGRANPHVLDKIKVDYYGTPTPLQQVGNVSV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R++ ++ WDK ++ +E+ I S+LG+ P +G V+R+ PE TEERR L K Sbjct: 59 PEARIIQIAPWDKTLIKDIEKAIMMSDLGITPSNDGTVIRLVFPELTEERRKQLTKDIRK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E +K++VRN+RRDG D KK K + SED + L ++QKITD IK+ID EEK Sbjct: 119 KGEDAKVAVRNVRRDGNDAFKKL-KGTEVSEDEINDLNEELQKITDKFIKDIDVAVEEKN 177 Query: 181 KEIMHF 186 KE+M Sbjct: 178 KEVMTV 183 >gi|15827834|ref|NP_302097.1| ribosome recycling factor [Mycobacterium leprae TN] gi|221230311|ref|YP_002503727.1| ribosome recycling factor [Mycobacterium leprae Br4923] gi|3122778|sp|O33046|RRF_MYCLE RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|254809523|sp|B8ZRV0|RRF_MYCLB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|2251188|emb|CAB10670.1| ribosome recycling factor [Mycobacterium leprae] gi|13093386|emb|CAC30541.1| ribosome recycling factor [Mycobacterium leprae] gi|219933418|emb|CAR71685.1| ribosome recycling factor [Mycobacterium leprae Br4923] Length = 185 Score = 227 bits (581), Expect = 4e-58, Method: Composition-based stats. Identities = 67/180 (37%), Positives = 110/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++M +S ++D+ +RTGR +P M + ++ YGS P+ Q+A++ V E R++ Sbjct: 6 LFDAEEKMEKAVSVAREDLSMIRTGRANPGMFSRLVIDYYGSATPITQLASINVPEARLV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +D + ++E I S+LG+NP +G ++R+ VP+ TEERR LVK A E +K Sbjct: 66 VIKPYDAIQLHAIETAIRNSDLGVNPSNDGTLIRVAVPQLTEERRRELVKQAKCKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +SVRNIRR M+ L + RK G+A ED V+ E D+ K T + ID + K+ E++ Sbjct: 126 VSVRNIRRKVMEELHRIRKDGEAGEDEVSRAEKDLDKTTHQYVIQIDELVKHKEGELLEV 185 >gi|313904228|ref|ZP_07837607.1| ribosome recycling factor [Eubacterium cellulosolvens 6] gi|313471030|gb|EFR66353.1| ribosome recycling factor [Eubacterium cellulosolvens 6] Length = 184 Score = 227 bits (581), Expect = 4e-58, Method: Composition-based stats. Identities = 77/175 (44%), Positives = 111/175 (63%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 ++M TI+ L ++ T+R GR +P +LD + VE YG+ PL QVAN+TV E R++ + W Sbjct: 10 EKMTKTIANLDSELATIRAGRANPHVLDRITVEYYGAPTPLQQVANITVPEARIIQIQPW 69 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 + MV + + I S LG+NP +G+V+R+ PE TE+RR L K E +K+++RN Sbjct: 70 EASMVKEIVKAIQMSELGINPSTDGKVVRLIFPELTEDRRKELTKDVKKKGEAAKVAIRN 129 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 IRRD D KK K+ SED++A LE D+QK+TD IK+ID E K KE+M Sbjct: 130 IRRDANDSFKKLEKAEDLSEDIIAGLEEDVQKLTDKYIKDIDKAVEVKSKELMTV 184 >gi|148653598|ref|YP_001280691.1| ribosome recycling factor [Psychrobacter sp. PRwf-1] gi|172048549|sp|A5WGF0|RRF_PSYWF RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|148572682|gb|ABQ94741.1| ribosome recycling factor [Psychrobacter sp. PRwf-1] Length = 184 Score = 227 bits (581), Expect = 4e-58, Method: Composition-based stats. Identities = 77/179 (43%), Positives = 114/179 (63%), Gaps = 1/179 (0%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ +DRM T+ L+ +RTGR P ML V V YG+ PLNQVA+V V + R L+ Sbjct: 7 KDGEDRMKKTLEVLENAFSKVRTGRAHPGMLSGVMVSYYGADTPLNQVASVNVEDSRTLL 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +++ MV +V++ I E++LGLNP+ V+R+P+P TEE R + K+A AE S++ Sbjct: 67 VQPFERSMVQAVDKAIREADLGLNPMTA-DVIRVPMPALTEETRRDMQKLARGEAENSRV 125 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RN+RRD ++ +K+ K + SED +DIQKITD I +IDS E K+KE+M Sbjct: 126 SIRNVRRDMLNDIKELAKEKEISEDDERRASDDIQKITDKYIASIDSKLEAKEKELMEV 184 >gi|288922418|ref|ZP_06416606.1| ribosome recycling factor [Frankia sp. EUN1f] gi|288346221|gb|EFC80562.1| ribosome recycling factor [Frankia sp. EUN1f] Length = 185 Score = 227 bits (581), Expect = 4e-58, Method: Composition-based stats. Identities = 60/180 (33%), Positives = 109/180 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M +S K+D +RTGR++P++ V V+ YG+ P+ Q+A+ + EPRM+ Sbjct: 6 LLEAEEKMDKAVSVAKEDFGNIRTGRITPAVFGKVLVDYYGAPTPVQQLASFHIPEPRMV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK + +VE+ + +S+LG+NP +G ++R PE +E+RR LVKVA AE+++ Sbjct: 66 IITPYDKSSLGAVEKAVRDSDLGVNPSNDGAIIRCVFPELSEQRRRELVKVARTKAEEAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+RNIRR D + + + G A ED E D+ + T + +D K+ +++ Sbjct: 126 VSIRNIRRHAKDAIDRIVRDGDAGEDEGRRGEKDLDEATHRYVAQVDELLRIKESDLLSV 185 >gi|298245133|ref|ZP_06968939.1| ribosome recycling factor [Ktedonobacter racemifer DSM 44963] gi|297552614|gb|EFH86479.1| ribosome recycling factor [Ktedonobacter racemifer DSM 44963] Length = 185 Score = 227 bits (581), Expect = 4e-58, Method: Composition-based stats. Identities = 71/180 (39%), Positives = 115/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + + RM I LK+D+ ++RTGR S S+LD + V+ YG+ P+NQVA +++ E R++ Sbjct: 6 FDDAERRMKRAIDALKQDLGSIRTGRASASLLDRITVDYYGAPTPVNQVATISIPEARLI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK++ A +E+ I +S+LG+NP +GQV+R+ +P EERR LVK H ++ K Sbjct: 66 VIQPWDKKISADIEKAIQKSDLGINPNNDGQVIRLNIPPMNEERRKDLVKSLHKKLDEHK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RRD D L++ K + SED + +QK+TD I+ +D + K+ EI+ Sbjct: 126 VAVRNVRRDVQDKLREREKKKEVSEDELKRSTEKLQKLTDRFIEEMDKVGKTKELEILEV 185 >gi|188586056|ref|YP_001917601.1| ribosome recycling factor [Natranaerobius thermophilus JW/NM-WN-LF] gi|229564261|sp|B2A383|RRF_NATTJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|179350743|gb|ACB85013.1| ribosome recycling factor [Natranaerobius thermophilus JW/NM-WN-LF] Length = 184 Score = 227 bits (581), Expect = 4e-58, Method: Composition-based stats. Identities = 78/180 (43%), Positives = 116/180 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ + +M +S LK ++ +LR GR +PS+L+ + V+ YG PLNQ+AN++ EPR+L Sbjct: 5 FKDAEQKMKKALSSLKSELASLRAGRANPSILEGINVDYYGMATPLNQLANISAPEPRLL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV +DK + +E+ I +S++GL P +GQV+R+ VP+ TEERR LVK+ E +K Sbjct: 65 VVQPYDKSAIEDIEKAILKSDVGLTPNNDGQVIRLAVPQLTEERRNELVKIVRQKGEDTK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 + VRN+RRD D LKK K + SED +++IQKITD IK ID K++EI F Sbjct: 125 VVVRNVRRDANDELKKLEKEKEISEDESIRGQDEIQKITDKYIKKIDEVMNAKEEEITSF 184 >gi|294102175|ref|YP_003554033.1| ribosome recycling factor [Aminobacterium colombiense DSM 12261] gi|293617155|gb|ADE57309.1| ribosome recycling factor [Aminobacterium colombiense DSM 12261] Length = 186 Score = 227 bits (581), Expect = 4e-58, Method: Composition-based stats. Identities = 70/179 (39%), Positives = 117/179 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ + ++M I LK++ +++RTGR P +++ ++V+ YGS P+ Q+A V+V E R + Sbjct: 6 IKTMSEKMEKVIEHLKEEFISIRTGRAHPGLVNDIRVDYYGSQTPIKQLATVSVPEARQI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +D+ ++ +E+ I S+LG+NP +G+ +R+ +PE T+ERR+ L KV YAE+++ Sbjct: 66 LIAPFDRSILKGIEKAIQASSLGINPQNDGENIRLTLPELTKERRIELSKVVSKYAEEAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 I+VRNIRR+ D LKK K SED D+Q ITD IK ID + K+KEI+ Sbjct: 126 IAVRNIRREVNDTLKKMEKDSVISEDEQRKYTKDVQDITDDFIKKIDEVLKVKEKEIIE 184 >gi|149010411|ref|ZP_01831782.1| ribosome recycling factor [Streptococcus pneumoniae SP19-BS75] gi|147764892|gb|EDK71821.1| ribosome recycling factor [Streptococcus pneumoniae SP19-BS75] Length = 185 Score = 227 bits (581), Expect = 4e-58, Method: Composition-based stats. Identities = 71/180 (39%), Positives = 114/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+RM + L ++ +R GR + S+LD V VE YG PLNQ+A++T+ E R+L Sbjct: 6 IEKAKERMTQSHQSLAREFGGIRAGRANASLLDRVHVEYYGVETPLNQIASITIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + +ER ++ S++G+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LVTPFDKSSLKDIERALNASDIGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD MD KK K+ + +ED + +LE DIQK+TD +K+I+ K+KE++ Sbjct: 126 VAVRNIRRDAMDEAKKREKAKEITEDELKTLEKDIQKVTDDAVKHINDMTANKEKELLEV 185 >gi|241896312|ref|ZP_04783608.1| ribosome recycling factor [Weissella paramesenteroides ATCC 33313] gi|241870473|gb|EER74224.1| ribosome recycling factor [Weissella paramesenteroides ATCC 33313] Length = 185 Score = 227 bits (581), Expect = 4e-58, Method: Composition-based stats. Identities = 76/180 (42%), Positives = 120/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +++ K+RM L++++ +R G +PS+L + VE YG+ PLNQ+A+VTV E R+L Sbjct: 6 IESAKERMSKAGDALRRELGNIRAGVANPSILRNITVEYYGAETPLNQLASVTVPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK ++ +E+ I S+LGL P +G V+R+ +P TEE R L K A +EK+K Sbjct: 66 LITPFDKSVLKGIEQSIFASDLGLTPANDGSVIRLVIPALTEETRKDLAKEVKAESEKAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RRD MD KK+ K+ SED ++E+DIQK TD+ IKN+D EK+KE++ Sbjct: 126 VAVRNVRRDAMDDAKKALKNNDLSEDEAHNIEDDIQKATDAAIKNVDEIAAEKEKELLTI 185 >gi|90961538|ref|YP_535454.1| ribosome recycling factor [Lactobacillus salivarius UCC118] gi|122449175|sp|Q1WUG4|RRF_LACS1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|90820732|gb|ABD99371.1| Ribosome Recycling Factor, RRF [Lactobacillus salivarius UCC118] Length = 187 Score = 227 bits (581), Expect = 4e-58, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 121/179 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +++M L++++ +R GR + S+L+ + VE YG+ PLNQ+A ++V E R+L Sbjct: 8 IKEAQEKMTKAEDSLRRELGNIRAGRANASLLNRINVEYYGAPTPLNQMAQISVPEARVL 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + ++E I S+LG+ P+ +G +R+ +P+ TEERR L K A +E K Sbjct: 68 LVTPYDKTSLKNIEHAIMASDLGIAPMNDGTAIRLVIPQLTEERRKELAKQVKAVSETGK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRNIRRD MD LKK++K+G +ED + LEN QK+TD +IKNID E+K+KE++ Sbjct: 128 VAVRNIRRDMMDALKKAQKNGDLTEDDLRDLENQAQKVTDESIKNIDKITEDKEKEVLE 186 >gi|310828069|ref|YP_003960426.1| ribosome recycling factor [Eubacterium limosum KIST612] gi|308739803|gb|ADO37463.1| ribosome recycling factor [Eubacterium limosum KIST612] Length = 185 Score = 227 bits (581), Expect = 4e-58, Method: Composition-based stats. Identities = 73/186 (39%), Positives = 117/186 (62%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ D D+M ++ L + + LR GR +P +LD V V+ YG+ +NQ+A+V V Sbjct: 2 LNEIKD--RANDKMQKALNNLNESLGGLRAGRANPHILDKVTVDYYGAATAINQLASVAV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E RM+ + +D ++++E+ I ++LG NP +G+++R+ VPE TEERR LVK+ Sbjct: 60 PEARMITIQPYDSTSISAIEKAILTADLGFNPSNDGKIIRLIVPELTEERRKELVKLTKK 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 Y E+ K+++RNIRR + LK + K G SED + E +IQK+TD +KNI+ +EK+ Sbjct: 120 YGEECKVAMRNIRRKAVQDLKDAEKEGLISEDELHQGEKEIQKLTDDEVKNIEGVLKEKE 179 Query: 181 KEIMHF 186 EIM Sbjct: 180 AEIMAV 185 >gi|91205947|ref|YP_538302.1| ribosome recycling factor [Rickettsia bellii RML369-C] gi|157826692|ref|YP_001495756.1| ribosome recycling factor [Rickettsia bellii OSU 85-389] gi|122425318|sp|Q1RHF1|RRF_RICBR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166231217|sp|A8GV48|RRF_RICB8 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|91069491|gb|ABE05213.1| Ribosome recycling factor [Rickettsia bellii RML369-C] gi|157801996|gb|ABV78719.1| ribosome recycling factor [Rickettsia bellii OSU 85-389] Length = 186 Score = 227 bits (581), Expect = 4e-58, Method: Composition-based stats. Identities = 85/186 (45%), Positives = 124/186 (66%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M++V +N++++M + L ++ LRTGR S ++LD V VEAYG +PL+QVA++T Sbjct: 1 MDKVTLKKNLQEKMDKALKVLDHELKGLRTGRASVNLLDSVTVEAYGDRMPLSQVASLTT 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R + V VWDK MV+SVE+ I +NLGL P +GQ++R+P+P TEERR L K+AH Sbjct: 61 PDARTINVQVWDKSMVSSVEKAITVANLGLTPSSDGQLIRLPIPALTEERRKELAKLAHK 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 Y E +KIS+RNIRRDG + LKK K ++D SL +QK+TD +DS ++K+ Sbjct: 121 YGEDTKISLRNIRRDGNEELKKMEKDNIIAKDEHHSLAEQVQKLTDEYSSKVDSAIKQKE 180 Query: 181 KEIMHF 186 +EIM Sbjct: 181 QEIMTV 186 >gi|158313016|ref|YP_001505524.1| ribosome recycling factor [Frankia sp. EAN1pec] gi|238686845|sp|A8L6D6|RRF_FRASN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|158108421|gb|ABW10618.1| ribosome recycling factor [Frankia sp. EAN1pec] Length = 185 Score = 227 bits (581), Expect = 4e-58, Method: Composition-based stats. Identities = 60/180 (33%), Positives = 109/180 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M +S K D +RTGR++P++ V V+ YG+ P+ Q+A+ + EPRM+ Sbjct: 6 LLEAEEKMDKAVSVAKDDFANIRTGRITPAVFGKVLVDYYGAPTPVQQLASFHIPEPRMV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK + +VE+ + +S+LG+NP +G ++R PE +E+RR LVKVA AE+++ Sbjct: 66 IITPYDKSSLGAVEKAVRDSDLGVNPSNDGTIIRCVFPELSEQRRRDLVKVARTKAEEAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+RNIRR D + + + G+A ED E D+ + T + +D K+ +++ Sbjct: 126 VSIRNIRRHAKDAIDRIVRDGEAGEDEGRRGEKDLDEATHRYVSQVDELLRIKESDLLSV 185 >gi|154506087|ref|ZP_02042825.1| hypothetical protein RUMGNA_03629 [Ruminococcus gnavus ATCC 29149] gi|153793586|gb|EDN76006.1| hypothetical protein RUMGNA_03629 [Ruminococcus gnavus ATCC 29149] Length = 183 Score = 227 bits (581), Expect = 4e-58, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 110/180 (61%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ D+M TI+ L ++ +R GR +P +LD + V+ YG P+ Q AN++V E RM+ Sbjct: 5 LKVYDDKMTKTINNLGSELAAIRAGRANPHVLDKLTVDYYGVPTPIQQAANISVPEARMI 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + W+K M+ +E+ I S++G+NP +G V+R+ PE TEERR LVK E +K Sbjct: 65 QIQPWEKSMLKEIEKAILMSDIGINPTNDGTVVRLMFPELTEERRKELVKDVKKKGEAAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRDG D KK K + SED + LE+ +QK+TD I +D E K KE++ Sbjct: 125 VAIRNIRRDGNDAFKKL-KGTEISEDGIKDLEDSLQKLTDKYIAEVDKAVEAKSKEVLTV 183 >gi|284992372|ref|YP_003410926.1| ribosome recycling factor [Geodermatophilus obscurus DSM 43160] gi|284065617|gb|ADB76555.1| ribosome recycling factor [Geodermatophilus obscurus DSM 43160] Length = 185 Score = 227 bits (580), Expect = 4e-58, Method: Composition-based stats. Identities = 64/180 (35%), Positives = 113/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + ++RM +S ++D+ ++RTGR +PSM + + V+ YG+ P+ Q++++TV E RM Sbjct: 6 LLDAEERMDKALSVAREDLGSVRTGRAAPSMFNKILVDYYGAPTPVPQMSSITVPEARMA 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +D ++++E+ I +S+LG+NP +GQ++R+ P+ TEERR LVK A A E +K Sbjct: 66 VIKPYDTGQLSAIEKAIRDSDLGVNPTNDGQIIRVVFPQLTEERRRDLVKQARAKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RN+RR + L + K G+A ED V E ++ +T ID + K+ E++ Sbjct: 126 VAIRNVRRRAKEELDRIAKDGEAGEDDVRRAEKELDDLTAKHTHGIDEAVKNKENELLEV 185 >gi|170723240|ref|YP_001750928.1| ribosome recycling factor [Pseudomonas putida W619] gi|229564262|sp|B1JBQ7|RRF_PSEPW RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|169761243|gb|ACA74559.1| ribosome recycling factor [Pseudomonas putida W619] Length = 185 Score = 227 bits (580), Expect = 5e-58, Method: Composition-based stats. Identities = 78/179 (43%), Positives = 117/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ +DRMG +I L +++ ++RTGR PS+LD VKV A+GS +PLNQVA V+V + R L Sbjct: 7 KDAQDRMGKSIEALGRNLASIRTGRAHPSILDSVKVPAWGSEMPLNQVAAVSVEDARTLK 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + DK + A++E+ I S+LGLNP G +R+P+P TEE R K A A AE +K+ Sbjct: 67 IVAHDKNLSAAIEKAILTSDLGLNPSSAGTTIRVPMPALTEETRKGYTKQASAVAEDAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD + LKK K + SED ++IQK+TD + ID+ F+ K+K+++ Sbjct: 127 AVRNVRRDALADLKKLTKDKEISEDEERRAADEIQKLTDKFVAEIDAAFKAKEKDLLAV 185 >gi|78212260|ref|YP_381039.1| ribosome recycling factor [Synechococcus sp. CC9605] gi|123578616|sp|Q3ALP8|RRF_SYNSC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|78196719|gb|ABB34484.1| ribosome recycling factor [Synechococcus sp. CC9605] Length = 182 Score = 227 bits (580), Expect = 5e-58, Method: Composition-based stats. Identities = 61/179 (34%), Positives = 106/179 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+++ M ++ +++ T+RTGR + S+LD + VE YG+ PL +A ++ + + + Sbjct: 4 QDLEASMRKSVEATQRNFNTIRTGRANSSLLDRISVEYYGAETPLKSLATLSTPDSQTIQ 63 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +D +AS+E+ I S LG P +G+++RI VP TEERR K+A YAE+ K+ Sbjct: 64 IQPFDISALASIEKAIAMSELGFTPNNDGKIIRINVPPLTEERRKEFCKLASKYAEEGKV 123 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD +D +KK K G+ SED ++ +QK D I ++ K+ +I+ Sbjct: 124 ALRNLRRDAIDKIKKQEKEGEFSEDQSRDEQDGVQKTLDKFIAELEKHLASKEADILKV 182 >gi|298370305|ref|ZP_06981621.1| ribosome recycling factor [Neisseria sp. oral taxon 014 str. F0314] gi|298281765|gb|EFI23254.1| ribosome recycling factor [Neisseria sp. oral taxon 014 str. F0314] Length = 185 Score = 227 bits (580), Expect = 5e-58, Method: Composition-based stats. Identities = 72/179 (40%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + + +M ++ LK+++ +RTGR +LD V+VE +GS VP++QVAN+T+++ R + Sbjct: 7 KTAEGKMQRSLEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVANITLVDARTIG 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V ++ M A VE+ I +SNLGLNP G ++R+P+P TEERR L+KV AE+ ++ Sbjct: 67 VKPFESNMAAKVEKAIRDSNLGLNPASVGDLIRVPMPMLTEERRKDLIKVVRNEAEEGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RN+RRD DH+KK K + SED E +QK+TD I D K++++M Sbjct: 127 SIRNVRRDANDHIKKLLKDKEVSEDEARRGEEAVQKLTDKYISEADKILAAKEEDLMAV 185 >gi|167766543|ref|ZP_02438596.1| hypothetical protein CLOSS21_01049 [Clostridium sp. SS2/1] gi|317498945|ref|ZP_07957228.1| ribosome recycling factor [Lachnospiraceae bacterium 5_1_63FAA] gi|167711666|gb|EDS22245.1| hypothetical protein CLOSS21_01049 [Clostridium sp. SS2/1] gi|291558581|emb|CBL37381.1| ribosome recycling factor [butyrate-producing bacterium SSC/2] gi|316893778|gb|EFV15977.1| ribosome recycling factor [Lachnospiraceae bacterium 5_1_63FAA] Length = 181 Score = 227 bits (580), Expect = 5e-58, Method: Composition-based stats. Identities = 70/180 (38%), Positives = 110/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ +D+M ++ + D MT+R GR +P +LD VKV+ YG P+ QV NV+V E R + Sbjct: 2 LKQFEDKMQKSLDSMANDFMTIRAGRANPHVLDKVKVDYYGVATPVAQVGNVSVPEARTI 61 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ W+ ++ +E+ I S++G+ P +G+ +R+ P+ TEERR L K E++K Sbjct: 62 MIQPWEPNLLKEIEKAILVSDIGITPTNDGKAIRLNFPDLTEERRKELAKDVKKRGEEAK 121 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD D +KK K+G ++D E+ +QK+TD IK ID + K KEIM Sbjct: 122 VAVRNIRRDANDFVKKQNKAGDLNDDQAKDEEDKVQKMTDKYIKQIDEAVDAKSKEIMTV 181 >gi|114768798|ref|ZP_01446424.1| ribosome recycling factor [alpha proteobacterium HTCC2255] gi|114549715|gb|EAU52596.1| ribosome recycling factor [alpha proteobacterium HTCC2255] Length = 183 Score = 227 bits (580), Expect = 5e-58, Method: Composition-based stats. Identities = 90/186 (48%), Positives = 127/186 (68%), Gaps = 3/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ ID+ I+ RM + +K + LRTGR S S+LD + V AYG+ PLNQ A + V Sbjct: 1 MSDDIDIDAIEKRMNGAVLAMKSEFQALRTGRASASLLDKIMVNAYGAMTPLNQCAGINV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPRM+ V+VWDK ++ SV++ I ESNLG+NP+ +G +LR+P+PE EERR+ L KVA Sbjct: 61 PEPRMITVTVWDKTLIDSVDKAIRESNLGINPVGDGMMLRLPIPELNEERRIELTKVAGG 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE ++I+VRN+RRDGMD +K KS + SED ++IQ++T+ +IK ID E+K+ Sbjct: 121 YAESARIAVRNVRRDGMDQVK---KSDELSEDDQKIWSDEIQELTNVSIKKIDEVLEQKQ 177 Query: 181 KEIMHF 186 EIM Sbjct: 178 AEIMQV 183 >gi|291299707|ref|YP_003510985.1| ribosome recycling factor [Stackebrandtia nassauensis DSM 44728] gi|290568927|gb|ADD41892.1| ribosome recycling factor [Stackebrandtia nassauensis DSM 44728] Length = 185 Score = 227 bits (580), Expect = 5e-58, Method: Composition-based stats. Identities = 69/180 (38%), Positives = 109/180 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++M +I K++ +RTGR S +M + V+ YGS PL Q+A++ V EPRM+ Sbjct: 6 LFDAEEKMDGSIEHAKEEFAAIRTGRASAAMFSKIVVDYYGSPTPLPQLASIAVPEPRMV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D ++ER I +S+LG+NP EG LR+ VP+ TEERR ++KVA AE+SK Sbjct: 66 IIKPYDVSQTDALERAIRDSDLGVNPNNEGNQLRLFVPQMTEERRREMIKVARHKAEESK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I+VRN+RR + L++ G+ ED E D+ ++T IK ID K+ E++ Sbjct: 126 IAVRNVRRKAKEELERLVSDGEVGEDEGHRAEKDLDELTQRHIKLIDELVAHKETELLEI 185 >gi|168184638|ref|ZP_02619302.1| ribosome recycling factor [Clostridium botulinum Bf] gi|170756757|ref|YP_001781975.1| ribosome recycling factor [Clostridium botulinum B1 str. Okra] gi|226949785|ref|YP_002804876.1| ribosome recycling factor [Clostridium botulinum A2 str. Kyoto] gi|237795867|ref|YP_002863419.1| ribosome recycling factor [Clostridium botulinum Ba4 str. 657] gi|229564223|sp|B1II63|RRF_CLOBK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|254809503|sp|C1FSK2|RRF_CLOBJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|259494535|sp|C3L0C9|RRF_CLOB6 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|169121969|gb|ACA45805.1| ribosome recycling factor [Clostridium botulinum B1 str. Okra] gi|182672259|gb|EDT84220.1| ribosome recycling factor [Clostridium botulinum Bf] gi|226841674|gb|ACO84340.1| ribosome recycling factor [Clostridium botulinum A2 str. Kyoto] gi|229263177|gb|ACQ54210.1| ribosome recycling factor [Clostridium botulinum Ba4 str. 657] gi|322806698|emb|CBZ04267.1| ribosome recycling factor [Clostridium botulinum H04402 065] Length = 184 Score = 227 bits (580), Expect = 5e-58, Method: Composition-based stats. Identities = 77/180 (42%), Positives = 120/180 (66%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ ++MG TI LK+++ +++ GR +P+MLD ++ E YGS PLNQ+ N++V E R+L Sbjct: 6 LKKADEKMGKTIVALKRELASMKAGRANPAMLDRIEAEYYGSMTPLNQLGNISVPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WDK ++++E+ I +S+LGLNP +G V+R+ +PE TEE R +VK E++K Sbjct: 66 LIQPWDKSALSAIEKAILKSDLGLNPSNDGTVIRLVIPELTEETRKNIVKTVKKTGEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++R+IRRD D +K +K SED + E+DIQK TD IK IDS K+KEI+ Sbjct: 126 VAIRSIRRDCNDDVKNLKKD-DVSEDDIKKAEDDIQKKTDKYIKEIDSIISAKEKEILSI 184 >gi|121638763|ref|YP_978987.1| ribosome recycling factor [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224991255|ref|YP_002645944.1| ribosome recycling factor [Mycobacterium bovis BCG str. Tokyo 172] gi|166230800|sp|A1KMM6|RRF_MYCBP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|254809522|sp|C1AFZ7|RRF_MYCBT RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|121494411|emb|CAL72892.1| Ribosome recycling factor frr [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224774370|dbj|BAH27176.1| ribosome recycling factor [Mycobacterium bovis BCG str. Tokyo 172] Length = 185 Score = 227 bits (580), Expect = 5e-58, Method: Composition-based stats. Identities = 64/180 (35%), Positives = 109/180 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++M ++ + D+ T+RTGR +P M + ++ YG+ + Q+A++ V E R++ Sbjct: 6 LFDAEEKMEKAVAVARDDLSTIRTGRANPGMFSRITIDYYGAATLITQLASINVPEARLV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ ++ + ++E I S+LG+NP +G ++R+ VP+ TEERR LVK A E++K Sbjct: 66 VIKPYEANQLRAIETAIRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +SVRNIRR M+ L + RK G+A ED V E D+ K T + ID + K+ E++ Sbjct: 126 VSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDKTTHQYVTQIDELVKHKEGELLEV 185 >gi|168180688|ref|ZP_02615352.1| ribosome recycling factor [Clostridium botulinum NCTC 2916] gi|182668443|gb|EDT80422.1| ribosome recycling factor [Clostridium botulinum NCTC 2916] Length = 184 Score = 227 bits (580), Expect = 5e-58, Method: Composition-based stats. Identities = 77/180 (42%), Positives = 120/180 (66%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ ++MG TI LK+++ +++ GR +P+MLD ++ E YGS PLNQ+ N++V E R+L Sbjct: 6 LKKADEKMGKTIVALKRELASMKAGRANPAMLDRIEAEYYGSMTPLNQLGNISVPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WDK ++++E+ I +S+LGLNP +G V+R+ +PE TEE R +VK E++K Sbjct: 66 LIQPWDKGALSAIEKAILKSDLGLNPSNDGTVIRLVIPELTEETRKNIVKTVKKTGEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++R+IRRD D +K +K SED + E+DIQK TD IK IDS K+KEI+ Sbjct: 126 VAIRSIRRDCNDDVKNLKKD-DVSEDDIKKAEDDIQKKTDKYIKEIDSIISAKEKEILSI 184 >gi|313677103|ref|YP_004055099.1| ribosome recycling factor [Marivirga tractuosa DSM 4126] gi|312943801|gb|ADR22991.1| ribosome recycling factor [Marivirga tractuosa DSM 4126] Length = 186 Score = 227 bits (580), Expect = 6e-58, Method: Composition-based stats. Identities = 74/186 (39%), Positives = 113/186 (60%), Gaps = 3/186 (1%) Query: 3 QVIDL--QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 + IDL K+ M I K ++ +R G+ SP+MLD + V+ YG+ P+NQVA+++ Sbjct: 2 EEIDLVLDEAKELMEKAIQHTKSNLQKIRAGKASPAMLDGLMVDYYGNDTPINQVASIST 61 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R +++ W+K ++ +ER I S+LG P +G+++RI +P TEERR++L K A Sbjct: 62 PDARSIIIKPWEKNIIGEIERAIINSDLGFTPQNDGEIVRINIPPLTEERRISLTKQAKN 121 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE KIS+RN R+D D LK+ +K G SED V E+ +Q +T+ K ID E K+ Sbjct: 122 EAEDGKISIRNARKDANDQLKQLQKEG-ISEDDVKRGEDKVQSLTNDFTKKIDDILEHKE 180 Query: 181 KEIMHF 186 KEIM Sbjct: 181 KEIMTV 186 >gi|322420123|ref|YP_004199346.1| ribosome recycling factor [Geobacter sp. M18] gi|320126510|gb|ADW14070.1| ribosome recycling factor [Geobacter sp. M18] Length = 185 Score = 227 bits (579), Expect = 6e-58, Method: Composition-based stats. Identities = 76/180 (42%), Positives = 114/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + ++ M TI L+KD +RTGR S S+LD +KV++YG+ PLNQVA + V E R + Sbjct: 6 ISSMNVHMDKTIESLRKDYQKVRTGRASTSLLDEIKVDSYGNLSPLNQVATLAVPEARTI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WD +M+ +E+ I SNLGLNP +G+++R+ +P TEERR +VK AE+SK Sbjct: 66 TIQPWDSKMIQPIEKAIMNSNLGLNPANDGKMIRLTLPPLTEERRKDIVKQLKRDAEESK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD +D LKK K + SED + E D+Q T++ + ID K+KE++ Sbjct: 126 VALRNIRRDAIDQLKKLEKDKQISEDELKRAEKDVQDSTNAHVAKIDEVLVHKEKEVLEV 185 >gi|302335682|ref|YP_003800889.1| ribosome recycling factor [Olsenella uli DSM 7084] gi|301319522|gb|ADK68009.1| ribosome recycling factor [Olsenella uli DSM 7084] Length = 181 Score = 227 bits (579), Expect = 6e-58, Method: Composition-based stats. Identities = 72/186 (38%), Positives = 110/186 (59%), Gaps = 5/186 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+Q D + + M ++ L+ + +RTGR + +LD ++V+ YG P+ Q+A V V Sbjct: 1 MSQYSD--SARKHMDKCLNALRGNFARVRTGRANAHVLDDIRVDYYGQMTPITQLAGVKV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E MLVV WDK + S+E+ I S+LG+ P +G +R+P P+ TEERR LVK H Sbjct: 59 PEASMLVVEPWDKSALKSIEKAIESSDLGITPSNDGVSIRLPFPKPTEERRKELVKECHK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE++K+++RN RRD K+ +S + SED VA + IQK+TD + +D + K Sbjct: 119 YAEEAKVAIRNARRDANG---KAERSEELSEDEVAREKKGIQKVTDDYVAKVDQMLKAKT 175 Query: 181 KEIMHF 186 E+M Sbjct: 176 AEVMEI 181 >gi|297571182|ref|YP_003696956.1| ribosome recycling factor [Arcanobacterium haemolyticum DSM 20595] gi|296931529|gb|ADH92337.1| ribosome recycling factor [Arcanobacterium haemolyticum DSM 20595] Length = 185 Score = 227 bits (579), Expect = 6e-58, Method: Composition-based stats. Identities = 72/180 (40%), Positives = 111/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++MG I + D +R+GR +P + + V+ YG+ PL Q+A V+V E R + Sbjct: 6 LLEAEEKMGKAIEVAQSDFSKIRSGRANPELFTSLVVDYYGAPTPLQQLATVSVPEARTV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +D+ + +ER I ES+LG+NP +GQVLRI +P TEERR VK+A AE ++ Sbjct: 66 LISPYDRSAMKDIERAIQESDLGVNPTDDGQVLRINLPALTEERRREYVKLAKGKAEDAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 IS+R IRR + L K +K G A ED V E +++ +T ++N+DS E K+KE+M Sbjct: 126 ISIRAIRRKAKETLDKIKKDGDAGEDDVERAEKELESLTKKFVENVDSLLESKEKELMEI 185 >gi|315924376|ref|ZP_07920598.1| ribosome recycling factor [Pseudoramibacter alactolyticus ATCC 23263] gi|315622255|gb|EFV02214.1| ribosome recycling factor [Pseudoramibacter alactolyticus ATCC 23263] Length = 185 Score = 227 bits (579), Expect = 6e-58, Method: Composition-based stats. Identities = 67/180 (37%), Positives = 110/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q +++M + L + TLR GR + +LD V V+ YG+ +NQ+A V E R++ Sbjct: 6 MQRAEEKMNKALENLSGSLNTLRAGRANAHILDKVTVDYYGAPTAINQLATVAAPEARLI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V +D + ++E+ I ++LG NP +G+++R+ VP+ TEERR LVK+ Y E+ K Sbjct: 66 TVQPYDTTALPAIEKAILTADLGFNPSNDGKIIRLAVPQLTEERRKELVKLTKKYGEECK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRR LK ++K G SED + +N +QK+TD IK ID+ + K++EI+ Sbjct: 126 VAMRNIRRKSDQKLKTAQKDGDISEDEMHDGQNSVQKLTDKKIKEIDAVLKAKEEEILAV 185 >gi|270307747|ref|YP_003329805.1| ribosome recycling factor [Dehalococcoides sp. VS] gi|270153639|gb|ACZ61477.1| ribosome recycling factor [Dehalococcoides sp. VS] Length = 185 Score = 227 bits (579), Expect = 6e-58, Method: Composition-based stats. Identities = 62/186 (33%), Positives = 117/186 (62%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ LQ + +M ++ L +++ +RTGR SP++++ ++VE G P+N +A ++ Sbjct: 2 INEI--LQKSEKKMTASLDVLSQELSGIRTGRSSPALVEHIRVEYAGVPTPINHLAGISA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 +PR + + WDK ++++E+ I +S+LGL P +G ++R+ +P +EERR ++K+ + Sbjct: 60 PDPRYITIQPWDKSCLSAIEKAIMKSDLGLMPNNDGNIIRLNIPPLSEERRQEMIKMVNK 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E+ KI++RN+RRD MD +KK K+ + S+D + + +QKITDS I D +K+ Sbjct: 120 RLEEDKIAMRNVRRDAMDEMKKLEKAKEISQDDLKRGSDQLQKITDSFIAKADKLGADKE 179 Query: 181 KEIMHF 186 E+ Sbjct: 180 TELKQV 185 >gi|50084551|ref|YP_046061.1| ribosome recycling factor [Acinetobacter sp. ADP1] gi|60390252|sp|Q6FCH2|RRF_ACIAD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|49530527|emb|CAG68239.1| ribosome releasing factor [Acinetobacter sp. ADP1] Length = 184 Score = 227 bits (579), Expect = 6e-58, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 112/179 (62%), Gaps = 1/179 (0%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM T+ L++ +RTGR PS+L+ V V YGS VPLNQVANV + + R LV Sbjct: 7 KDSEQRMQKTLESLEQGFAKVRTGRAHPSILNGVMVPYYGSDVPLNQVANVGIEDSRTLV 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +++ MV+++++ I ES+LGLNPI +R+P+P TEE R + KVA + AE +K+ Sbjct: 67 VQPFERTMVSAIDKAIRESDLGLNPITA-DSIRVPLPALTEETRRDMQKVARSEAENAKV 125 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD + LK K + SED +DIQKITD + +D K+ E+M Sbjct: 126 AIRNIRRDVLGDLKSLLKDKEISEDDERRAGDDIQKITDKYVAEVDKRLAAKEAELMKV 184 >gi|297156857|gb|ADI06569.1| ribosome recycling factor [Streptomyces bingchenggensis BCW-1] Length = 185 Score = 227 bits (579), Expect = 6e-58, Method: Composition-based stats. Identities = 59/174 (33%), Positives = 102/174 (58%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M + K+D +RTGR P+M + + + YG+ P+NQ+A+ +V EPRM VV+ +D Sbjct: 12 KMEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGAMTPINQLASFSVPEPRMAVVTPFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K + ++E+ I +S+LG+NP +G ++R+ PE TE+RR +KVA E +KIS+R++ Sbjct: 72 KTALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEQRRKEFIKVAKGKGEDAKISIRSV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RR + + K K G+ ED E ++ T + +D + K+ E++ Sbjct: 132 RRKAKESIDKLIKDGEVGEDEGRRAEKELDDTTAKYVAQVDELLKHKEAELLEV 185 >gi|167626815|ref|YP_001677315.1| ribosome recycling factor [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|241667396|ref|ZP_04754974.1| ribosome recycling factor [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254875945|ref|ZP_05248655.1| ribosome recycling factor [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|189044055|sp|B0U0Z8|RRF_FRAP2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|167596816|gb|ABZ86814.1| ribosome recycling factor [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|254841966|gb|EET20380.1| ribosome recycling factor [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 185 Score = 227 bits (579), Expect = 6e-58, Method: Composition-based stats. Identities = 72/178 (40%), Positives = 110/178 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ ++RM T+ L D+ +RTGR P +L V ++ YGS P+ QVANVTVL+ R L Sbjct: 6 LKDAENRMSKTLEVLADDLAKIRTGRAHPDILAHVTIDYYGSATPITQVANVTVLDARTL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ W+K + +E+ I S+LGLNP G LR+P+P EERR LVK+ + E + Sbjct: 66 GITPWEKGLAGKIEKAIITSDLGLNPTNLGDSLRVPMPALNEERRKELVKLVKSETESGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +S+RNIRRD +K+ K + +ED E++IQKITD I D+ +K++++M Sbjct: 126 VSIRNIRRDANGDIKELLKEKEITEDEAKRAEDNIQKITDKMIAQADALAVKKEQDLM 183 >gi|104783192|ref|YP_609690.1| ribosome recycling factor [Pseudomonas entomophila L48] gi|122402174|sp|Q1I629|RRF_PSEE4 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|95112179|emb|CAK16906.1| ribosome releasing factor [Pseudomonas entomophila L48] Length = 185 Score = 227 bits (579), Expect = 6e-58, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 117/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RMG +I L +++ ++RTGR PS+LD VKV A+GS +PLNQVA +TV + R L Sbjct: 7 KDAQERMGKSIEALGRNLASIRTGRAHPSILDSVKVPAWGSDMPLNQVAAITVEDARTLK 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + DK + A++E+ I S+LGLNP G +R+P+P TEE R K A + AE +K+ Sbjct: 67 IVAHDKNLSAAIEKAILTSDLGLNPSSAGTTIRVPMPALTEETRKGYTKQASSVAEDAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD + LKK K + SED ++IQK+TD + ID+ F+ K+K+++ Sbjct: 127 AVRNVRRDALADLKKLTKDKEISEDEERRAADEIQKLTDKFVAEIDAAFKAKEKDLLAV 185 >gi|261364373|ref|ZP_05977256.1| ribosome recycling factor [Neisseria mucosa ATCC 25996] gi|288567641|gb|EFC89201.1| ribosome recycling factor [Neisseria mucosa ATCC 25996] Length = 185 Score = 227 bits (579), Expect = 6e-58, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + + +M ++ LK+++ +RTGR +LD V+VE +GS VP++QVANVT+L+ R + Sbjct: 7 KTAESKMQRSVEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVANVTLLDARTIG 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V ++ M A VE+ I +SNLGLNP G ++R+P+P TEERR L+KV + AE+ ++ Sbjct: 67 VKPFESNMAAKVEKAIRDSNLGLNPAAVGDLIRVPMPMLTEERRKDLIKVVRSEAEEGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RN+RRD DH+KK K + SED E +QK+TD I D K++++M Sbjct: 127 SIRNVRRDANDHIKKLLKEKEISEDEARRGEEAVQKLTDKYIAEADKTLAAKEEDLMAI 185 >gi|15676114|ref|NP_273245.1| ribosome recycling factor [Neisseria meningitidis MC58] gi|121634062|ref|YP_974307.1| ribosome recycling factor [Neisseria meningitidis FAM18] gi|218767120|ref|YP_002341632.1| ribosome recycling factor [Neisseria meningitidis Z2491] gi|296313408|ref|ZP_06863349.1| ribosome recycling factor [Neisseria polysaccharea ATCC 43768] gi|54039296|sp|P66737|RRF_NEIMB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|54042004|sp|P66736|RRF_NEIMA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166230807|sp|A1KRL9|RRF_NEIMF RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|7225406|gb|AAF40644.1| ribosome recycling factor [Neisseria meningitidis MC58] gi|120865768|emb|CAM09497.1| ribosome recycling factor [Neisseria meningitidis FAM18] gi|121051128|emb|CAM07399.1| ribosome recycling factor [Neisseria meningitidis Z2491] gi|261391723|emb|CAX49172.1| ribosome recycling factor (ribosome-releasing factor; RRF) [Neisseria meningitidis 8013] gi|296840119|gb|EFH24057.1| ribosome recycling factor [Neisseria polysaccharea ATCC 43768] gi|319411327|emb|CBY91738.1| ribosome recycling factor (ribosome-releasing factor; RRF) [Neisseria meningitidis WUE 2594] gi|325129106|gb|EGC51955.1| ribosome recycling factor [Neisseria meningitidis N1568] gi|325133101|gb|EGC55773.1| ribosome recycling factor [Neisseria meningitidis M6190] gi|325139079|gb|EGC61625.1| ribosome recycling factor [Neisseria meningitidis ES14902] gi|325141201|gb|EGC63701.1| ribosome recycling factor [Neisseria meningitidis CU385] gi|325145384|gb|EGC67661.1| ribosome recycling factor [Neisseria meningitidis M01-240013] gi|325199400|gb|ADY94855.1| ribosome recycling factor [Neisseria meningitidis H44/76] gi|325202978|gb|ADY98432.1| ribosome recycling factor [Neisseria meningitidis M01-240149] gi|325203308|gb|ADY98761.1| ribosome recycling factor [Neisseria meningitidis M01-240355] gi|325205280|gb|ADZ00733.1| ribosome recycling factor [Neisseria meningitidis M04-240196] Length = 185 Score = 227 bits (579), Expect = 6e-58, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + + +M ++ LK+++ +RTGR +LD V+VE +GS VP++QVANVT+L+ R + Sbjct: 7 KTAEGKMQRSVEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVANVTLLDARTIG 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V ++ M A VE+ I +SNLGLNP G ++R+P+P TEERR L+KV AE+ ++ Sbjct: 67 VKPFEGNMAAKVEKAIRDSNLGLNPAAVGDLIRVPMPMLTEERRKDLIKVVRGEAEEGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RN+RRD DH+KK K + SED E +QK+TD I D K++++M Sbjct: 127 SIRNVRRDANDHIKKLLKDKEISEDEARRGEEAVQKLTDKYITEADKLLTAKEEDLMAI 185 >gi|325001877|ref|ZP_08122989.1| ribosome recycling factor [Pseudonocardia sp. P1] Length = 185 Score = 227 bits (579), Expect = 6e-58, Method: Composition-based stats. Identities = 64/180 (35%), Positives = 114/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++++M + + D+ +RTGR +PSM + V+ YG+ PLNQ+A+V++ E RM Sbjct: 6 LFDVEEKMEKAVGVARDDLTGVRTGRATPSMFSRIVVDYYGAATPLNQLASVSIPEARMA 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +D + ++E+ I ES+LG+NP +GQ++R+ +P+ +EERR +VKVA E ++ Sbjct: 66 VIKPYDASQLKAMEKAIAESDLGVNPSNDGQIIRVIIPQLSEERRRDMVKVARGKGEDAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 + +R +RR MD L + ++ G+A ED V E ++Q +TD + ID + K+ E++ Sbjct: 126 VVMRGLRRKAMDELHRIQRDGEAGEDEVVRGEKELQVLTDRYVAQIDELVKNKESELLEV 185 >gi|118594910|ref|ZP_01552257.1| ribosome releasing factor [Methylophilales bacterium HTCC2181] gi|118440688|gb|EAV47315.1| ribosome releasing factor [Methylophilales bacterium HTCC2181] Length = 184 Score = 227 bits (579), Expect = 6e-58, Method: Composition-based stats. Identities = 70/177 (39%), Positives = 114/177 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N +++M ++I LK ++ +RTGR +LD + V+ YGS LNQVA VT+ + + Sbjct: 6 KNTRNKMQNSIDALKGNLSKIRTGRAHTGVLDHINVDYYGSQTALNQVAGVTLGDATTIN 65 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + ++K M+A +E+ I ES+LGLNP G ++R+P+P TEERR L+KV + E +KI Sbjct: 66 IQPYEKTMIAVIEKAIRESDLGLNPATSGDLIRVPMPPLTEERRKDLIKVVKSEGENTKI 125 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++RN+RRD + LKK K + SED + ++QK+TD I ++D E K+K+++ Sbjct: 126 AIRNVRRDANEALKKLTKEKEISEDDERRAQEEVQKMTDQFIVSVDQTIETKEKDLL 182 >gi|116749216|ref|YP_845903.1| ribosome recycling factor [Syntrophobacter fumaroxidans MPOB] gi|166231522|sp|A0LJ66|RRF_SYNFM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|116698280|gb|ABK17468.1| ribosome recycling factor [Syntrophobacter fumaroxidans MPOB] Length = 185 Score = 227 bits (579), Expect = 6e-58, Method: Composition-based stats. Identities = 72/180 (40%), Positives = 112/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + +DRM + L+ D LRTGR S S++D ++ E YG+ LNQ+A +T+ EPR + Sbjct: 6 FADARDRMSKALDNLETDYKRLRTGRASVSLVDGIRAEYYGTPTALNQLATITIPEPRTI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WD ++ +E+ I +S LGL P+ +G+V+RI +P T +RR LVKV +E+SK Sbjct: 66 MIQPWDTSVIGEIEKSILKSELGLTPMSDGKVIRINIPVLTADRRRELVKVVKKMSEESK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD + +K +K + SED + + Q+ITD IK ID + K+KEI+ Sbjct: 126 VAVRNIRRDVNEMIKDLKKEKEISEDEQFKAQEETQRITDDFIKKIDVVYSAKEKEILEI 185 >gi|126726888|ref|ZP_01742727.1| ribosome recycling factor [Rhodobacterales bacterium HTCC2150] gi|126703846|gb|EBA02940.1| ribosome recycling factor [Rhodobacterales bacterium HTCC2150] Length = 188 Score = 227 bits (579), Expect = 7e-58, Method: Composition-based stats. Identities = 87/176 (49%), Positives = 122/176 (69%), Gaps = 1/176 (0%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 K RM ++ LK + TLRTGR + +MLD + VEAYG P+NQV V V EPRML ++V Sbjct: 14 KRRMDGAMTSLKSEFQTLRTGRAAATMLDPISVEAYGQRTPINQVGTVNVPEPRMLTINV 73 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 WDK MV +VE+ I ES LG+NP+V+G ++R+P+PE EERR L KVA YAE +K++VR Sbjct: 74 WDKTMVQAVEKAIRESGLGINPVVDGTIIRLPIPELNEERRRELTKVAAQYAESAKVAVR 133 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 N+RRDGMD +KK++ +G ED ++IQ++TD+ I +D+ K++EIM Sbjct: 134 NVRRDGMDQIKKAKGNG-MGEDDQKIWADEIQEVTDAAIAAVDASLAAKQEEIMQV 188 >gi|254430178|ref|ZP_05043881.1| ribosome recycling factor [Cyanobium sp. PCC 7001] gi|197624631|gb|EDY37190.1| ribosome recycling factor [Cyanobium sp. PCC 7001] Length = 179 Score = 227 bits (579), Expect = 7e-58, Method: Composition-based stats. Identities = 63/178 (35%), Positives = 111/178 (62%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 +++ M ++ ++ T+RTGR +PS+LD + VE YG+ PL +A+++ + + + + Sbjct: 2 DLEASMRKSVDAALRNFNTIRTGRANPSLLDKISVEYYGAETPLKSLASLSTPDSQTIQI 61 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 +D + +E+ I S+LGL +G+V+RI +P TE+RR L K+A YAE+ K++ Sbjct: 62 QPFDTGAMGLIEKAIAMSDLGLTCNNDGRVIRINIPPLTEDRRKELCKIAAKYAEEGKVA 121 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +RN RRDG+D +KK K G+ SED ++ +QK+TD I+ ++ +EK+ EI+ Sbjct: 122 LRNNRRDGIDRIKKQEKDGELSEDQSRDEQDKVQKLTDKFIEELEKHLKEKEAEILKV 179 >gi|160944136|ref|ZP_02091366.1| hypothetical protein FAEPRAM212_01638 [Faecalibacterium prausnitzii M21/2] gi|158444812|gb|EDP21816.1| hypothetical protein FAEPRAM212_01638 [Faecalibacterium prausnitzii M21/2] gi|295105052|emb|CBL02596.1| ribosome recycling factor [Faecalibacterium prausnitzii SL3/3] Length = 184 Score = 227 bits (579), Expect = 7e-58, Method: Composition-based stats. Identities = 70/181 (38%), Positives = 114/181 (62%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 + + +D+M ++ L +++ +R GR +P++LD V V+ YG+ P+ Q+A V V E R Sbjct: 4 NTKVYEDKMKSSVEHLSRELAAVRAGRANPAVLDKVVVDYYGAPTPIQQLAAVAVSEART 63 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 L ++ WD+ ++ + + I S++G+ PI +G +R+ P EERR L K E + Sbjct: 64 LTITPWDRTLLRPISKAIMASDVGITPIDDGVTIRLNFPAPNEERRKQLAKEVSKLGEDA 123 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 K++VRN+RRD MD K +K+G+ +ED ++E D+QK+TD IKNID+ EEK+KEIM Sbjct: 124 KVAVRNVRRDAMDKAKAMKKAGELTEDTQKTMEEDVQKLTDKYIKNIDAAVEEKQKEIMA 183 Query: 186 F 186 Sbjct: 184 V 184 >gi|33866285|ref|NP_897844.1| ribosome recycling factor [Synechococcus sp. WH 8102] gi|39932068|sp|Q7U5F4|RRF_SYNPX RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|33639260|emb|CAE08268.1| ribosome recycling factor protein Rrf [Synechococcus sp. WH 8102] Length = 182 Score = 227 bits (579), Expect = 7e-58, Method: Composition-based stats. Identities = 61/179 (34%), Positives = 106/179 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+++ M ++ +++ T+RTGR + S+LD + VE YG+ PL +A ++ + + + Sbjct: 4 QDLEASMRKSVEATQRNFNTIRTGRANSSLLDRISVEYYGAETPLKSLATLSTPDSQTIQ 63 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +D +AS+E+ I S LG P +G+++RI VP TEERR K+A YAE+ K+ Sbjct: 64 IQPFDISALASIEKAIAMSELGFTPNNDGKIIRINVPPLTEERRKEFCKLASKYAEEGKV 123 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD +D +KK K G SED ++ +QK D I ++ +K+ +I+ Sbjct: 124 ALRNLRRDAIDKVKKQEKDGDFSEDQSRDEQDAVQKTLDKFIAELEKHLADKEADILKV 182 >gi|326490946|dbj|BAJ90140.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326512904|dbj|BAK03359.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 266 Score = 227 bits (579), Expect = 7e-58, Method: Composition-based stats. Identities = 63/176 (35%), Positives = 107/176 (60%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + K++M I ++ + T+RTGR +PSMLD ++VE YG+ V L +A V + L+ Sbjct: 88 EQAKEKMEKAIETVQSNFNTVRTGRANPSMLDRIEVEYYGTPVNLKTIAQVNTPDATSLL 147 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +DK + +E+ I +N+G+ P +G+V+R+ VP T +RR + K +E+ K+ Sbjct: 148 IQPYDKSCLKLIEKAIVAANIGVTPSNDGEVIRVTVPPLTSDRRKEMTKTVAKLSEEGKV 207 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 ++RNIRRD + K K K SED V L D+QKITD +K +++ ++K++E+ Sbjct: 208 AIRNIRRDAIKAYDKLEKEKKLSEDNVKDLSADLQKITDEYMKKVEAIQKQKEQEL 263 >gi|261378087|ref|ZP_05982660.1| ribosome recycling factor [Neisseria cinerea ATCC 14685] gi|269145536|gb|EEZ71954.1| ribosome recycling factor [Neisseria cinerea ATCC 14685] Length = 185 Score = 227 bits (579), Expect = 7e-58, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + + +M ++ LK+++ +RTGR +LD V+VE +GS VP++QVANVT+L+ R + Sbjct: 7 KTAESKMQRSVEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVANVTLLDARTIG 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V ++ M A VE+ I +SNLGLNP G ++R+P+P TEERR L+KV + AE+ ++ Sbjct: 67 VKPFESNMAAKVEKAIRDSNLGLNPAAVGDLIRVPMPMLTEERRKDLIKVVRSEAEEGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RN+RRD DH+KK K + SED E +QK+TD I D K++++M Sbjct: 127 SIRNVRRDANDHIKKLLKDKEISEDEARRGEEAVQKLTDKYITEADKLLTAKEEDLMAI 185 >gi|253581352|ref|ZP_04858578.1| ribosome recycling factor [Fusobacterium varium ATCC 27725] gi|251836716|gb|EES65250.1| ribosome recycling factor [Fusobacterium varium ATCC 27725] Length = 188 Score = 227 bits (579), Expect = 7e-58, Method: Composition-based stats. Identities = 85/176 (48%), Positives = 117/176 (66%), Gaps = 2/176 (1%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 ++MG I K ++R GR S SMLD V+VE YGS +PLNQV +V+ E R+LV+ Sbjct: 10 CNEKMGKAIEATKHKFTSIRAGRASVSMLDSVRVEQYGSEMPLNQVGSVSAPEARLLVID 69 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 WDK +++ +E+ I +NLGL P +G+V+R+ +PE T ERR VK+A AE K++V Sbjct: 70 PWDKSLISKIEKAIMAANLGLTPNNDGKVIRLVMPELTAERRKEYVKMAKTEAENGKVAV 129 Query: 130 RNIRRDGMDHLKKSRKSGK--ASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 RNIR+DG + LKK K + SED V +LE +IQKITD+ IK ID F +K+KEI Sbjct: 130 RNIRKDGNNDLKKLSKDKENPISEDEVKTLEAEIQKITDAHIKVIDDLFAKKEKEI 185 >gi|269123002|ref|YP_003305579.1| ribosome recycling factor [Streptobacillus moniliformis DSM 12112] gi|268314328|gb|ACZ00702.1| ribosome recycling factor [Streptobacillus moniliformis DSM 12112] Length = 185 Score = 227 bits (579), Expect = 7e-58, Method: Composition-based stats. Identities = 70/174 (40%), Positives = 109/174 (62%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M T+ K +R GR + SM+D V V+ YG PLNQV +VT E R+LV+ WD Sbjct: 12 KMEKTLESTKVRFSHVRAGRANVSMVDGVLVDYYGQMSPLNQVGSVTAPEARLLVIDPWD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K ++ ++E+ I +N+G NP +G+++R+ VPE TE+RR VKV AE+ K++ RNI Sbjct: 72 KSLIPAIEKAILAANIGFNPSNDGRIIRLVVPELTEDRRKEYVKVVKKEAEEGKVAARNI 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 R+D + ++K K + +ED + +E IQK+TD IK+ID +K+KE++ Sbjct: 132 RKDYNNKVRKMEKDSEITEDDLKHVEEKIQKLTDECIKHIDELLAKKEKELLSI 185 >gi|325197474|gb|ADY92930.1| ribosome recycling factor [Neisseria meningitidis G2136] Length = 185 Score = 227 bits (579), Expect = 7e-58, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + + +M ++ LK+++ +RTGR +LD V+VE +GS VP++QVANVT+L+ R + Sbjct: 7 KTAEGKMQRSVEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVANVTLLDARTIG 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V ++ M A VE+ I +SNLGLNP G ++R+P+P TEERR L+KV AE+ ++ Sbjct: 67 VKPFESNMAAKVEKAIRDSNLGLNPAAVGDLIRVPMPMLTEERRKDLIKVVRGEAEEGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RN+RRD DH+KK K + SED E +QK+TD I D K++++M Sbjct: 127 SIRNVRRDANDHIKKLLKDKEISEDEARRGEEAVQKLTDKYITEADKLLTAKEEDLMAI 185 >gi|159903064|ref|YP_001550408.1| ribosome recycling factor [Prochlorococcus marinus str. MIT 9211] gi|226749934|sp|A9BEE4|RRF_PROM4 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|159888240|gb|ABX08454.1| Ribosome recycling factor [Prochlorococcus marinus str. MIT 9211] Length = 182 Score = 227 bits (579), Expect = 7e-58, Method: Composition-based stats. Identities = 60/179 (33%), Positives = 109/179 (60%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++ M ++ +++ T+RTGR + S+LD + VE YG+ PL +A ++ + + + Sbjct: 4 KELEQNMRKSVEAAQRNFNTIRTGRANTSLLDRLTVEYYGADTPLKSLATISTPDSQTIS 63 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +D + +E+ I S+LG P +G+++RI +P TEERR K+A YAE+ K+ Sbjct: 64 IQPFDLSSLVLIEKSIAMSDLGFTPNNDGKIIRINIPPLTEERRKEFCKLASKYAEEGKV 123 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD ++ +KKS K + SED ++++QK+TD I I+ +K++EI+ Sbjct: 124 ALRNIRRDAIERIKKSEKESEISEDQSRDEQDNVQKLTDRFITEIEKNLSDKEQEILKV 182 >gi|124025289|ref|YP_001014405.1| ribosome recycling factor [Prochlorococcus marinus str. NATL1A] gi|166230815|sp|A2C0Y0|RRF_PROM1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|123960357|gb|ABM75140.1| Ribosome recycling factor [Prochlorococcus marinus str. NATL1A] Length = 182 Score = 227 bits (579), Expect = 7e-58, Method: Composition-based stats. Identities = 70/179 (39%), Positives = 111/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q +K+ M ++ +++ T+RTGR + S+LD + VE YG+ PL +A +T + + + Sbjct: 4 QELKNTMSKSVEAAQRNFNTIRTGRANTSLLDRISVEYYGAETPLKSLATITTPDSQTIA 63 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +D +AS+E+ I S+LG P +G+++RI VP TEERR K+A YAE+ K+ Sbjct: 64 IQPFDLGSLASIEKAIATSDLGFTPNNDGKIIRINVPPLTEERRKEFCKLASKYAEEGKV 123 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRR+ +D +KKS K G SED + IQK TD+ IK+I+ EK+ EI+ Sbjct: 124 ALRNIRREAIDRVKKSEKDGDLSEDQSRDEQEKIQKETDNFIKDIEKKLSEKEAEILKV 182 >gi|260588561|ref|ZP_05854474.1| ribosome recycling factor [Blautia hansenii DSM 20583] gi|331082136|ref|ZP_08331264.1| ribosome recycling factor [Lachnospiraceae bacterium 6_1_63FAA] gi|260541036|gb|EEX21605.1| ribosome recycling factor [Blautia hansenii DSM 20583] gi|330405731|gb|EGG85261.1| ribosome recycling factor [Lachnospiraceae bacterium 6_1_63FAA] Length = 185 Score = 227 bits (579), Expect = 7e-58, Method: Composition-based stats. Identities = 76/180 (42%), Positives = 112/180 (62%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q + +M T+ L K+++T+R GR +P +LD + V+ YG+ PL QVAN+TV E RM+ Sbjct: 7 IQVYEHKMTKTLEGLTKELVTIRAGRANPHILDKLTVDYYGTPTPLQQVANITVPEARMI 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + W+ ++ + + I S+L LNP +G+++R+ +PE TEERR LVK E +K Sbjct: 67 QIQPWEASLIKEISKAILSSDLNLNPNSDGKIIRLVLPELTEERRKELVKDVKKKGEAAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RRD D KK K SED + LE IQKITD +K I+ EEK KEI+ Sbjct: 127 VAVRNVRRDANDAFKKLAKQ-DVSEDEIKELEEQIQKITDKFVKEIEKAVEEKSKEILTV 185 >gi|269795652|ref|YP_003315107.1| ribosome recycling factor [Sanguibacter keddieii DSM 10542] gi|269097837|gb|ACZ22273.1| ribosome recycling factor [Sanguibacter keddieii DSM 10542] Length = 185 Score = 227 bits (579), Expect = 7e-58, Method: Composition-based stats. Identities = 63/180 (35%), Positives = 99/180 (55%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +D+M I K ++RTGR + +M + VE YG+ PL Q+A+ E R + Sbjct: 6 LLEAEDKMDKAIEVAKNGFASIRTGRANSAMFSRITVEYYGAQTPLQQLASFNTPEARTI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V +DK + ++ER + +S+LG+NP +G V+RI +P T ERR VK+A AE ++ Sbjct: 66 LVVPFDKTALPAIERALRDSDLGVNPSNDGNVIRIVLPVLTAERRKEYVKLAKTQAEDAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +SVR +RR D L K K G A ED E +++ IT + +D K+ E++ Sbjct: 126 VSVRAVRRKAKDTLDKLVKDGDAGEDEGVRAEKELEAITKRHVDVVDQLLASKEAELLEV 185 >gi|72383689|ref|YP_293044.1| ribosome recycling factor [Prochlorococcus marinus str. NATL2A] gi|123620292|sp|Q46GQ5|RRF_PROMT RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|72003539|gb|AAZ59341.1| ribosome recycling factor [Prochlorococcus marinus str. NATL2A] Length = 182 Score = 227 bits (579), Expect = 7e-58, Method: Composition-based stats. Identities = 71/179 (39%), Positives = 110/179 (61%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q +K M +I +++ T+RTGR + S+LD + VE YG+ PL +A +T + + + Sbjct: 4 QELKTTMSKSIEAAQRNFNTIRTGRANTSLLDRISVEYYGAETPLKSLATITTPDSQTIA 63 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +D +AS+E+ I S+LG P +G+++RI VP TEERR K+A YAE+ K+ Sbjct: 64 IQPFDLGSLASIEKAIATSDLGFTPNNDGKIIRINVPPLTEERRKEFCKLASKYAEEGKV 123 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRR+ +D +KKS K G SED + IQK TD+ IK+I+ EK+ EI+ Sbjct: 124 ALRNIRREAIDRVKKSEKDGDLSEDQSRDEQETIQKETDNFIKDIEKKLSEKEAEILKV 182 >gi|283783270|ref|YP_003374024.1| ribosome recycling factor [Gardnerella vaginalis 409-05] gi|297243503|ref|ZP_06927435.1| ribosome recycling factor [Gardnerella vaginalis AMD] gi|298252794|ref|ZP_06976588.1| ribosome recycling factor [Gardnerella vaginalis 5-1] gi|283442171|gb|ADB14637.1| ribosome recycling factor [Gardnerella vaginalis 409-05] gi|296888548|gb|EFH27288.1| ribosome recycling factor [Gardnerella vaginalis AMD] gi|297533158|gb|EFH72042.1| ribosome recycling factor [Gardnerella vaginalis 5-1] Length = 184 Score = 227 bits (579), Expect = 7e-58, Method: Composition-based stats. Identities = 70/186 (37%), Positives = 116/186 (62%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ +ID +++M ++ K++ M +RTGR +P++L+ + V+ YG+ P+ VA++ V Sbjct: 1 MSAIID--QAREQMNKSVEATKENFMGIRTGRANPALLNGIMVDYYGAPTPIKAVASIGV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPR L V+ +D +VE+ I +S+LG++P +G V+R+ +PE TEERR VK+A Sbjct: 59 PEPRTLSVTPFDASQANAVEKAIRDSDLGVSPNRDGNVIRVTMPELTEERRKEYVKLAKN 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE+ K++VRNIRR + + KS K G+ ED L+ ++ K+T ++D E K+ Sbjct: 119 KAEEGKVAVRNIRRKAKESIDKSVKDGELGEDEGDRLQKELDKVTKQVTDSLDVLLEGKQ 178 Query: 181 KEIMHF 186 KEIM Sbjct: 179 KEIMEV 184 >gi|124267165|ref|YP_001021169.1| ribosome recycling factor [Methylibium petroleiphilum PM1] gi|166230798|sp|A2SH95|RRF_METPP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|124259940|gb|ABM94934.1| ribosome recycling factor [Methylibium petroleiphilum PM1] Length = 186 Score = 227 bits (579), Expect = 7e-58, Method: Composition-based stats. Identities = 74/184 (40%), Positives = 110/184 (59%), Gaps = 1/184 (0%) Query: 4 VIDLQNI-KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLE 62 + D++ + + +I K ++ +RTGR P +LD V VE YGS V ++QVANV++L+ Sbjct: 3 IADIKKTFEQKSARSIESFKSELQKIRTGRAHPGILDQVHVEYYGSMVSISQVANVSLLD 62 Query: 63 PRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 R + V W+K M +E+ I ES+LGLNP +G++LR+P+P EERR L KV Sbjct: 63 ARTISVQPWEKGMGPKIEKAIRESDLGLNPSSQGELLRVPMPALNEERRRDLTKVVRGAG 122 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 E ++I+VRN+RRD D KK K SED +++QK+TD I ID + K+ E Sbjct: 123 EDARIAVRNLRRDANDQAKKLLKDKAISEDDERRSLDEVQKLTDRVIAEIDRLVQSKEAE 182 Query: 183 IMHF 186 I+ Sbjct: 183 ILAV 186 >gi|328957401|ref|YP_004374787.1| ribosome recycling factor [Carnobacterium sp. 17-4] gi|328673725|gb|AEB29771.1| ribosome recycling factor [Carnobacterium sp. 17-4] Length = 185 Score = 227 bits (579), Expect = 7e-58, Method: Composition-based stats. Identities = 72/180 (40%), Positives = 125/180 (69%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ +K++M T L++++ T+R GR + +LD + V YG+ PL Q+A +++ EPR+L Sbjct: 6 LETMKEKMVKTEGALQRELGTIRAGRANAGLLDRINVVYYGAPTPLKQLAQISIPEPRVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK ++ +E+ I +S+LG++P +G V+R+ +P+ TEERR L K AE +K Sbjct: 66 MVTPFDKTSISDIEKAIMQSDLGISPANDGNVIRLVIPQLTEERRKELAKKVGKEAENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +SVRNIRR+ +D LKK+ K+ + ++D + + E DIQKIT++++KNID +K+KE++ Sbjct: 126 VSVRNIRREAIDELKKAEKNNEITQDDLRTFEEDIQKITNTSVKNIDGIAADKEKELLDV 185 >gi|315221842|ref|ZP_07863754.1| ribosome recycling factor [Streptococcus anginosus F0211] gi|315189075|gb|EFU22778.1| ribosome recycling factor [Streptococcus anginosus F0211] Length = 185 Score = 227 bits (579), Expect = 7e-58, Method: Composition-based stats. Identities = 71/180 (39%), Positives = 114/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+RM + L ++ ++R GR + S+LD + VE YG PLNQ+A++T+ E R+L Sbjct: 6 VEKAKERMTQSHQSLAREFGSIRAGRANASLLDRISVEYYGVETPLNQIASITIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + +E ++ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LVTPFDKSSIKDIEHALNASDLGITPASDGTVIRLVIPALTEETRRNLAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIRRD MD KK K+ + +ED + +LE DIQK+TD +K+ID K+KE++ Sbjct: 126 IAIRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDEAVKHIDEMTASKEKELIEV 185 >gi|318056584|ref|ZP_07975307.1| ribosome recycling factor [Streptomyces sp. SA3_actG] gi|318075679|ref|ZP_07983011.1| ribosome recycling factor [Streptomyces sp. SA3_actF] gi|333024152|ref|ZP_08452216.1| putative ribosome recycling factor [Streptomyces sp. Tu6071] gi|332744004|gb|EGJ74445.1| putative ribosome recycling factor [Streptomyces sp. Tu6071] Length = 186 Score = 227 bits (579), Expect = 8e-58, Method: Composition-based stats. Identities = 60/174 (34%), Positives = 102/174 (58%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M + K+D+ +RTGR P+M + + + YG+ P+NQ+A+ +V EPRM VV+ +D Sbjct: 13 KMEKAVVVAKEDLAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMAVVTPFD 72 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K + ++E+ I +S+LG+NP +G ++R+ PE TEERR +KVA E +++S+R + Sbjct: 73 KSALRNIEQAIRDSDLGVNPSNDGHIIRVVFPELTEERRKEFIKVARTKGEDARVSIRAV 132 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RR D L K K + ED V E ++ T + +D + K+ E++ Sbjct: 133 RRKAKDALDKLVKDKETGEDEVRRAEKELDDTTAKYVAQVDELLKHKESELLEV 186 >gi|42519369|ref|NP_965299.1| ribosome recycling factor [Lactobacillus johnsonii NCC 533] gi|227890234|ref|ZP_04008039.1| ribosome recycling factor [Lactobacillus johnsonii ATCC 33200] gi|268319254|ref|YP_003292910.1| hypothetical protein FI9785_769 [Lactobacillus johnsonii FI9785] gi|47116993|sp|P61305|RRF_LACJO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|41583657|gb|AAS09265.1| ribosome recycling factor [Lactobacillus johnsonii NCC 533] gi|227849236|gb|EEJ59322.1| ribosome recycling factor [Lactobacillus johnsonii ATCC 33200] gi|262397629|emb|CAX66643.1| frr [Lactobacillus johnsonii FI9785] gi|329667112|gb|AEB93060.1| ribosome recycling factor [Lactobacillus johnsonii DPC 6026] Length = 185 Score = 226 bits (578), Expect = 8e-58, Method: Composition-based stats. Identities = 75/182 (41%), Positives = 113/182 (62%), Gaps = 2/182 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 N+VI + KD M +I+ +K++ +R G + S+LD +KV YG PL Q+++V++ Sbjct: 3 NEVI--EKAKDNMKKSIAVFQKELGGIRAGVANASLLDGIKVNYYGVPTPLTQMSSVSIP 60 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 E R+L+V+ +DK + +E I S+LG+ P +G V+RI +P+ T ERR + K Sbjct: 61 EARVLMVTPYDKSTLDDIEHAILASDLGITPANDGTVIRIVIPQLTGERRQEIAKQVGKL 120 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 AEK KI+VRN+RRD MD LK+ K G +ED SLE +QK+TD K ID ++K + Sbjct: 121 AEKGKIAVRNVRRDAMDTLKRQEKDGDITEDEQRSLEKQVQKVTDDATKEIDKLADQKSQ 180 Query: 182 EI 183 EI Sbjct: 181 EI 182 >gi|253700113|ref|YP_003021302.1| ribosome recycling factor [Geobacter sp. M21] gi|259494543|sp|C6E515|RRF_GEOSM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|251774963|gb|ACT17544.1| ribosome recycling factor [Geobacter sp. M21] Length = 185 Score = 226 bits (578), Expect = 8e-58, Method: Composition-based stats. Identities = 75/180 (41%), Positives = 116/180 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + N+ MG +I L+K+ +RTGR + S+LD +K+++YG+ PLNQVA + + E R + Sbjct: 6 ISNMNVHMGKSIESLRKEYQKVRTGRATTSLLDDIKIDSYGTLSPLNQVATLAIPEARTI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +S WD +M+A +E+ I SNLGLNP +G+++R+ +P TEERR +VK AE++K Sbjct: 66 TISPWDSKMIAPIEKAIMNSNLGLNPANDGKMIRLVLPPLTEERRKDIVKQLKRDAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD +D LKK K SED + E D+Q T+S + +D K+KE+M Sbjct: 126 VALRNIRRDAIDQLKKLEKDKSISEDELKRAEKDVQDSTNSHVAKVDEVLLHKEKEVMEV 185 >gi|184155193|ref|YP_001843533.1| ribosome recycling factor [Lactobacillus fermentum IFO 3956] gi|260662307|ref|ZP_05863203.1| ribosome recycling factor [Lactobacillus fermentum 28-3-CHN] gi|183226537|dbj|BAG27053.1| ribosome recycling factor [Lactobacillus fermentum IFO 3956] gi|260553690|gb|EEX26582.1| ribosome recycling factor [Lactobacillus fermentum 28-3-CHN] Length = 186 Score = 226 bits (578), Expect = 8e-58, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 118/179 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K++M + LK+ + +R GR + S+L+ V VE YG+ PLNQ+A++T+ E R L Sbjct: 7 LAEAKEKMAKSGDALKRTLADIRAGRANASLLNTVTVEYYGAPTPLNQLASITIPEARQL 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +DK + +ER I+ESNLGL P +G+ +R+ VP+ TE+RR LVK A EK+K Sbjct: 67 LISPYDKTTLKDIERAIYESNLGLTPQNDGETIRLVVPQLTEDRRKELVKDVKAEMEKAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRN+RR+ MD LKK K G ++D LE +Q+ TD+ IKN++ +K+KE++ Sbjct: 127 VAVRNVRREAMDDLKKGNKDGDFNDDEFHDLEKQVQEETDAGIKNLEQIAADKEKELLE 185 >gi|257455346|ref|ZP_05620581.1| ribosome recycling factor [Enhydrobacter aerosaccus SK60] gi|257447308|gb|EEV22316.1| ribosome recycling factor [Enhydrobacter aerosaccus SK60] Length = 184 Score = 226 bits (578), Expect = 8e-58, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 108/179 (60%), Gaps = 1/179 (0%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + +D+M I L+ LRTGR P +L V V YGS +PLNQVA++ V + R L+ Sbjct: 7 KQGEDKMKKAIEALENAFSKLRTGRAHPGILQGVMVSYYGSEMPLNQVASINVEDSRTLL 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +D+ MV +V++ I ES+LGLNP+ +V+R+P+P TEE R + K+A AE+ ++ Sbjct: 67 VQPFDRSMVQAVDKAIRESDLGLNPMSA-EVIRVPLPALTEETRKDMQKLARHEAEERRV 125 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRN RRD + LK K + SED +DIQK+TD I +ID K+ E+M Sbjct: 126 SVRNARRDANNALKALVKDKQISEDDERRANDDIQKMTDKYIDSIDKMLSSKEAELMAV 184 >gi|260435842|ref|ZP_05789812.1| ribosome recycling factor [Synechococcus sp. WH 8109] gi|260413716|gb|EEX07012.1| ribosome recycling factor [Synechococcus sp. WH 8109] Length = 182 Score = 226 bits (578), Expect = 8e-58, Method: Composition-based stats. Identities = 60/179 (33%), Positives = 106/179 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+++ M ++ +++ T+RTGR + S+LD + VE YG+ PL +A ++ + + + Sbjct: 4 QDLEASMRKSVEATQRNFNTIRTGRANSSLLDRISVEYYGADTPLKSLATLSTPDSQTIQ 63 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +D +AS+E+ I S LG P +G+++RI VP TEERR K+A YAE+ K+ Sbjct: 64 IQPFDISALASIEKAIAMSELGFTPNNDGKIIRINVPPLTEERRKEFCKLASKYAEEGKV 123 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD +D +KK K G+ SED ++ +QK D I ++ K+ +++ Sbjct: 124 ALRNLRRDAIDKIKKQEKEGEFSEDQSRDEQDGVQKTLDKFIAELEQHLATKEADVLKV 182 >gi|119963211|ref|YP_947274.1| ribosome recycling factor [Arthrobacter aurescens TC1] gi|171704626|sp|A1R4W2|RRF_ARTAT RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|119950070|gb|ABM08981.1| ribosome recycling factor [Arthrobacter aurescens TC1] Length = 185 Score = 226 bits (578), Expect = 8e-58, Method: Composition-based stats. Identities = 60/180 (33%), Positives = 104/180 (57%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++M + K D ++RTGR +P++ + V VE YG+ PL Q+A+ V + R + Sbjct: 6 LLEAGEKMDKAVEVAKDDFASIRTGRANPALYNKVIVEYYGTPTPLQQLASFGVPDARTI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK + +E+ + +S +G NP +G V+R+ +PE T+ERR VK+ E +K Sbjct: 66 LITPYDKTALRDIEKALSDSEVGANPSNDGNVIRVTIPELTKERRKEYVKIVKGKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+R+IRR D L K K G+A ED A E ++ +T + +ID + K+ E++ Sbjct: 126 VSIRSIRRKAKDSLDKLVKDGEAGEDEGARAEKELDALTKQHVDSIDELLKRKEAELLEV 185 >gi|147669001|ref|YP_001213819.1| ribosome recycling factor [Dehalococcoides sp. BAV1] gi|146269949|gb|ABQ16941.1| ribosome recycling factor [Dehalococcoides sp. BAV1] Length = 173 Score = 226 bits (578), Expect = 8e-58, Method: Composition-based stats. Identities = 58/173 (33%), Positives = 110/173 (63%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M ++ L +++ +RTGR SP++++ ++VE G P+N +AN++ +PR + + WD+ Sbjct: 1 MSASLDVLLQELSGIRTGRSSPALVEHIRVEYAGVPTPINHLANISAPDPRYITIQPWDR 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 ++++E+ I +S+LGL P +G ++R+ +P +EERR ++K+ + E+ KI++RN+R Sbjct: 61 SCLSAIEKAIMKSDLGLMPNNDGNIIRLNIPPLSEERRQEMIKIVNKRLEEDKIAMRNVR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RD MD +KK K+ + S+D + + +QKITD+ I D +K+ E+ Sbjct: 121 RDAMDEMKKLEKAKEISQDDLKRGSDQLQKITDNFIAKADKLGADKEAELRQV 173 >gi|298712852|emb|CBJ33372.1| ribosome recycling factor [Ectocarpus siliculosus] Length = 251 Score = 226 bits (578), Expect = 8e-58, Method: Composition-based stats. Identities = 68/180 (37%), Positives = 110/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + + ++RM ++ ++ ++ TLRTGR +P +LD V VE YG+ PLNQVA+V L Sbjct: 72 MASAQERMDKSVESVRLNLETLRTGRANPKILDRVVVECYGAETPLNQVASVKTTSATAL 131 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V +D ++A + I E++LGL P +G V+R+ +P TE+RR L K A E+ K Sbjct: 132 LVESYDPTILADIAAAIQEADLGLTPNNDGTVIRLNMPPVTEDRRKELAKEAKGLGEEGK 191 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRR+ +D +KK+ K+ +D ++ IQK+TD T K ID K+K+I+ Sbjct: 192 VAIRNIRREAVDTVKKAEKAKNLGKDQSKDAQDAIQKLTDKTTKTIDEKVAAKEKDILKV 251 >gi|300114873|ref|YP_003761448.1| ribosome recycling factor [Nitrosococcus watsonii C-113] gi|299540810|gb|ADJ29127.1| ribosome recycling factor [Nitrosococcus watsonii C-113] Length = 185 Score = 226 bits (578), Expect = 8e-58, Method: Composition-based stats. Identities = 71/179 (39%), Positives = 111/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ RM +++ LK+ LR R S+LD + V YG++VPLNQVAN+ V + R L Sbjct: 7 EDASQRMDKSLTALKQTFAKLRANRAHTSLLDHITVSYYGNNVPLNQVANIAVEDARTLT 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+ W+++MV ++E+ I S LGLNP+ G V+R+P+P TEERR +V++ AE +++ Sbjct: 67 VTPWERQMVPTIEKAIITSELGLNPVTAGTVIRVPLPVLTEERRREMVRLVRQEAEAARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD +K+ K + SED E IQKITD+ I +D K++++M Sbjct: 127 AMRNIRRDSNHTIKELIKEKEISEDDQRRAEEAIQKITDNHITQVDELLVVKEQDLMEV 185 >gi|187778975|ref|ZP_02995448.1| hypothetical protein CLOSPO_02570 [Clostridium sporogenes ATCC 15579] gi|187772600|gb|EDU36402.1| hypothetical protein CLOSPO_02570 [Clostridium sporogenes ATCC 15579] Length = 184 Score = 226 bits (578), Expect = 8e-58, Method: Composition-based stats. Identities = 76/180 (42%), Positives = 120/180 (66%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ ++MG TI LK+++ +++ GR +P+MLD ++ E YGS PLNQ+ N++V E R+L Sbjct: 6 LKKADEKMGKTIVALKRELASMKAGRANPAMLDRIEAEYYGSMTPLNQLGNISVPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WDK ++++E+ I +S+LGLNP +G V+R+ +PE TEE R +VK E++K Sbjct: 66 LIQPWDKSALSAIEKAILKSDLGLNPSNDGTVIRLVIPELTEETRKNIVKTVKKTGEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++R+IRRD D +K +K SED + E+DIQK TD IK +DS K+KEI+ Sbjct: 126 VAIRSIRRDCNDDVKNLKKD-DVSEDDIKKAEDDIQKKTDKYIKEVDSIISVKEKEILSI 184 >gi|160934097|ref|ZP_02081484.1| hypothetical protein CLOLEP_02960 [Clostridium leptum DSM 753] gi|156866770|gb|EDO60142.1| hypothetical protein CLOLEP_02960 [Clostridium leptum DSM 753] Length = 184 Score = 226 bits (578), Expect = 8e-58, Method: Composition-based stats. Identities = 72/180 (40%), Positives = 114/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +N +M TI+ L + +R GR +P++LD + V+ YGS +NQ+A ++V E R L Sbjct: 5 FENADKKMNKTINALTSEFAGIRAGRANPAVLDKIMVDYYGSPTAINQLAAISVTEARTL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +S WD+ +V +VE+ I S+LG+NP +G+V+R+ P TE+RR +VK E++K Sbjct: 65 TISPWDQSVVHAVEKAIQSSDLGINPQTDGKVIRLIFPPLTEDRRRDIVKDIKKMEEEAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++R+IRRD MD LK +K+G+ +ED + E +Q TD IK I+S + K+KEIM Sbjct: 125 VAIRSIRRDSMDKLKALKKNGEITEDDLKDAEKKMQNQTDKFIKEIESISQVKEKEIMEI 184 >gi|294788085|ref|ZP_06753329.1| ribosome recycling factor [Simonsiella muelleri ATCC 29453] gi|294484378|gb|EFG32061.1| ribosome recycling factor [Simonsiella muelleri ATCC 29453] Length = 185 Score = 226 bits (578), Expect = 8e-58, Method: Composition-based stats. Identities = 68/179 (37%), Positives = 112/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ +++M ++ L +++ +RTGR +LD V+VE +G+ VP+ Q A++T+++ R + Sbjct: 7 KSTENKMQRSVEVLGENLAKVRTGRAHTGLLDQVEVEYWGNMVPVGQAASLTLIDARTIG 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V ++ M + +E+ I +SNLGLNP G ++R+P+P TEERR L+KV AE ++ Sbjct: 67 VKPFESNMASKIEKAIRDSNLGLNPSSVGDLIRVPMPMLTEERRKDLIKVVRGEAEDGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRN+RRD DH+KK K + SED E +QK+TD I ID K++++M Sbjct: 127 SVRNVRRDANDHIKKLLKDKEISEDDARRGEEAVQKLTDKFIAEIDKMLASKEEDLMAI 185 >gi|229586395|ref|YP_002844896.1| ribosome recycling factor [Rickettsia africae ESF-5] gi|259494553|sp|C3PMJ3|RRF_RICAE RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|228021445|gb|ACP53153.1| Ribosome recycling factor [Rickettsia africae ESF-5] Length = 186 Score = 226 bits (578), Expect = 8e-58, Method: Composition-based stats. Identities = 85/179 (47%), Positives = 123/179 (68%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N++++M + L ++ LRTGR S ++LD V VEAYGS +PL+QVA+++ + R + Sbjct: 8 KNLQEKMEKALKVLDHELKGLRTGRASVNLLDSVTVEAYGSKMPLSQVASLSTPDARTIN 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V VWDK MV+SVE+GI +NLGL P +GQ++R+P+P TEERR LVK+AH Y E +KI Sbjct: 68 VQVWDKSMVSSVEKGITIANLGLTPATDGQLIRLPIPALTEERRTELVKLAHKYGEDTKI 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RNIRRDG + LKK K ++D SL +QK+TD +DS ++K++EIM Sbjct: 128 SLRNIRRDGNEALKKLAKDNVIAKDEHHSLSEQVQKLTDDYSNKVDSVIKQKEQEIMTV 186 >gi|11277801|pir||T48108 hypothetical protein F16M2.40 - Arabidopsis thaliana gi|7523401|emb|CAB86420.1| putative protein [Arabidopsis thaliana] Length = 289 Score = 226 bits (578), Expect = 8e-58, Method: Composition-based stats. Identities = 65/184 (35%), Positives = 109/184 (59%), Gaps = 6/184 (3%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 ++K +M TI L+ ++RTGR + +MLD ++VE YGS V L +A ++ + L++ Sbjct: 106 DVKSKMEKTIETLRTSFNSIRTGRSNAAMLDKIEVEYYGSPVSLKSIAQISTPDGSSLLL 165 Query: 69 SVWDKE------MVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 +DK + ++E+ I S+LG+ P +G V+R+ +P T +RR L KV + Sbjct: 166 QPYDKSRYMTNGALMAIEKAIVNSDLGVTPNNDGDVIRLSLPPLTSDRRKELSKVVAKQS 225 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 E+ K+++RNIRRD + K K K SED V L +D+QK+ D +K I+ +++K+KE Sbjct: 226 EEGKVALRNIRRDALKSYDKLEKEKKLSEDNVKDLSSDLQKLIDVYMKKIEELYKQKEKE 285 Query: 183 IMHF 186 +M Sbjct: 286 LMKV 289 >gi|295836271|ref|ZP_06823204.1| ribosome recycling factor [Streptomyces sp. SPB74] gi|302522178|ref|ZP_07274520.1| ribosome recycling factor [Streptomyces sp. SPB78] gi|197697364|gb|EDY44297.1| ribosome recycling factor [Streptomyces sp. SPB74] gi|302431073|gb|EFL02889.1| ribosome recycling factor [Streptomyces sp. SPB78] Length = 185 Score = 226 bits (578), Expect = 9e-58, Method: Composition-based stats. Identities = 60/174 (34%), Positives = 102/174 (58%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M + K+D+ +RTGR P+M + + + YG+ P+NQ+A+ +V EPRM VV+ +D Sbjct: 12 KMEKAVVVAKEDLAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMAVVTPFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K + ++E+ I +S+LG+NP +G ++R+ PE TEERR +KVA E +++S+R + Sbjct: 72 KSALRNIEQAIRDSDLGVNPSNDGHIIRVVFPELTEERRKEFIKVARTKGEDARVSIRAV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RR D L K K + ED V E ++ T + +D + K+ E++ Sbjct: 132 RRKAKDALDKLVKDKETGEDEVRRAEKELDDTTAKYVAQVDELLKHKESELLEV 185 >gi|294815389|ref|ZP_06774032.1| Ribosome-recycling factor [Streptomyces clavuligerus ATCC 27064] gi|294327988|gb|EFG09631.1| Ribosome-recycling factor [Streptomyces clavuligerus ATCC 27064] Length = 173 Score = 226 bits (578), Expect = 9e-58, Method: Composition-based stats. Identities = 62/173 (35%), Positives = 102/173 (58%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M + K+D +RTGR P+M + + + YG+ P+NQ+A+ +V EPRM VV+ +DK Sbjct: 1 MEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMAVVTPFDK 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 + ++E+ I +S+LG+NP +G ++R+ PE TEERR +KVA AE SKIS+R++R Sbjct: 61 TALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEERRRDYIKVAKGKAEDSKISIRSVR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 R + + K K G+ ED E ++ T + +D + K+ E++ Sbjct: 121 RKAKEAIDKLVKDGEVGEDEGRRGEKELDDTTAKYVAQVDELLKHKEAELLEV 173 >gi|167032162|ref|YP_001667393.1| ribosome recycling factor [Pseudomonas putida GB-1] gi|189044066|sp|B0KSA2|RRF_PSEPG RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166858650|gb|ABY97057.1| ribosome recycling factor [Pseudomonas putida GB-1] Length = 185 Score = 226 bits (578), Expect = 9e-58, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ L +++ +RTGR PS+LD VKV A+GS +PLNQVA +TV + R L Sbjct: 7 KDAQERMTKSLEALGRNLAAIRTGRAHPSILDTVKVTAWGSEMPLNQVAAITVEDARTLK 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + DK + A++E+ I S+LGLNP G +R+P+P TEE R K A AE +K+ Sbjct: 67 IVAHDKNLSAAIEKAILTSDLGLNPSSAGTTIRVPMPALTEETRKGYTKQASGVAEDAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD + LKK K + SED ++IQK+TD + +D+ F+ K+K++M Sbjct: 127 AVRNVRRDALADLKKLTKDKEISEDEERRAADEIQKLTDKFVAEVDAAFKAKEKDLMAV 185 >gi|310779561|ref|YP_003967894.1| ribosome recycling factor [Ilyobacter polytropus DSM 2926] gi|309748884|gb|ADO83546.1| ribosome recycling factor [Ilyobacter polytropus DSM 2926] Length = 186 Score = 226 bits (578), Expect = 9e-58, Method: Composition-based stats. Identities = 81/183 (44%), Positives = 120/183 (65%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ + + +++M I K ++R GR + SMLD +KVE YGS +PLNQVANV+ Sbjct: 1 MSAQEIMNDCREKMDKAIESTKHKFASIRAGRANVSMLDGIKVEQYGSEMPLNQVANVSA 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R+LV+ WDK ++ +E+ I SNLGL P +G+V+R+ +PE T ERR VK+A Sbjct: 61 PEARLLVIDPWDKSIIQKIEKTIMLSNLGLTPNNDGKVIRLQIPELTAERRKEYVKLAKT 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE KI++RNIR+D +HL++ K G ++D + S E+D QKITD+ IK +D ++K+ Sbjct: 121 EAENGKIAIRNIRKDANNHLRRLEKDGDITQDELKSFEDDTQKITDNHIKLVDELLKKKE 180 Query: 181 KEI 183 KEI Sbjct: 181 KEI 183 >gi|325135114|gb|EGC57741.1| ribosome recycling factor [Neisseria meningitidis M13399] gi|325137020|gb|EGC59616.1| ribosome recycling factor [Neisseria meningitidis M0579] Length = 185 Score = 226 bits (578), Expect = 9e-58, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + + +M ++ LK+++ +RTGR +LD V+VE +GS VP++QVANVT+L+ R + Sbjct: 7 KTAEGKMQRSVEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVANVTLLDARTIG 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V ++ M A VE+ I +SNLGLNP G ++R+P+P TEERR L+KV AE+ ++ Sbjct: 67 VKPFEGNMAAKVEKAIRDSNLGLNPAAVGDLIRVPMPMLTEERRKDLIKVVRGEAEEGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RN+RRD DH+KK K + SED E +QK+TD I D K++++M Sbjct: 127 SIRNVRRDANDHIKKLLKDKEISEDEARRGEEAVQKLTDKYITEADKLLTTKEEDLMAI 185 >gi|326791507|ref|YP_004309328.1| ribosome recycling factor [Clostridium lentocellum DSM 5427] gi|326542271|gb|ADZ84130.1| ribosome recycling factor [Clostridium lentocellum DSM 5427] Length = 184 Score = 226 bits (578), Expect = 9e-58, Method: Composition-based stats. Identities = 68/181 (37%), Positives = 114/181 (62%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 +L +++M ++ ++ T+R GR +P +LD + V+ YG P+ QV N+TV E R+ Sbjct: 4 ELNKCQEKMNKSLGAFADELATIRAGRANPHVLDRLTVDYYGVATPVQQVGNITVPEARV 63 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 L + W+ ++ ++E+ I+ES+LG+NP +G+V+R+ PE TEERR L K E S Sbjct: 64 LQIQPWEGTLLKAIEKAINESDLGINPTNDGKVIRLVFPELTEERRKDLTKDIKKKGENS 123 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 KI++RNIRRD ++ KK K+ + ++D V E ++QK+TD + ID+ ++K KEI+ Sbjct: 124 KIAIRNIRRDALETFKKMEKANEMTKDEVEVAEKEVQKLTDKFVGEIDALVDKKSKEILS 183 Query: 186 F 186 Sbjct: 184 V 184 >gi|213691943|ref|YP_002322529.1| ribosome recycling factor [Bifidobacterium longum subsp. infantis ATCC 15697] gi|254809493|sp|B7GQS1|RRF_BIFLI RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|213523404|gb|ACJ52151.1| ribosome recycling factor [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458050|dbj|BAJ68671.1| ribosome recycling factor [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 183 Score = 226 bits (578), Expect = 9e-58, Method: Composition-based stats. Identities = 69/180 (38%), Positives = 109/180 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + +++M T+ K++ +RTGR +P++L+ + V+ YG+ P+ VA++ V EPR L Sbjct: 4 IDQAREQMAKTVENTKENFSGIRTGRANPALLNGITVDYYGAPTPIKAVASIGVPEPRTL 63 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +D +VE+ + S+LG++P +G V+R+ +PE TEERR VK+A AE K Sbjct: 64 SVTPFDASQAGAVEKALRNSDLGVSPNRDGNVIRLTMPELTEERRKEYVKLAKGKAEDGK 123 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRR + L K+ K G+ ED L D+ K+T S ID+ E K+KEIM Sbjct: 124 VAVRNIRRKTKEALDKAVKDGEMGEDEGDRLLKDLDKVTKSVTDEIDALLESKQKEIMEV 183 >gi|146318980|ref|YP_001198692.1| ribosome recycling factor [Streptococcus suis 05ZYH33] gi|146321189|ref|YP_001200900.1| ribosome recycling factor [Streptococcus suis 98HAH33] gi|253752048|ref|YP_003025189.1| ribosome recycling factor [Streptococcus suis SC84] gi|253753873|ref|YP_003027014.1| ribosome recycling factor [Streptococcus suis P1/7] gi|253755251|ref|YP_003028391.1| ribosome recycling factor [Streptococcus suis BM407] gi|302024058|ref|ZP_07249269.1| ribosome recycling factor [Streptococcus suis 05HAS68] gi|330832480|ref|YP_004401305.1| ribosome recycling factor [Streptococcus suis ST3] gi|166231519|sp|A4W2B1|RRF_STRS2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166231521|sp|A4VW03|RRF_STRSY RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|145689786|gb|ABP90292.1| Ribosome recycling factor [Streptococcus suis 05ZYH33] gi|145691995|gb|ABP92500.1| Ribosome recycling factor [Streptococcus suis 98HAH33] gi|251816337|emb|CAZ51968.1| ribosome recycling factor [Streptococcus suis SC84] gi|251817715|emb|CAZ55464.1| ribosome recycling factor [Streptococcus suis BM407] gi|251820119|emb|CAR46427.1| ribosome recycling factor [Streptococcus suis P1/7] gi|319758416|gb|ADV70358.1| ribosome recycling factor [Streptococcus suis JS14] gi|329306703|gb|AEB81119.1| ribosome recycling factor [Streptococcus suis ST3] Length = 185 Score = 226 bits (578), Expect = 9e-58, Method: Composition-based stats. Identities = 76/186 (40%), Positives = 119/186 (63%), Gaps = 1/186 (0%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M++ I + ++RM + L ++ +R GR + S+LD + VE YGS PLNQ+A +TV Sbjct: 1 MSKEI-IAKAQERMNQSHQSLAREFSHIRAGRANASLLDRISVEYYGSPTPLNQLAGITV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R+L+++ +DK ++ +ER ++ S+LGL P +G V+R+ +P TEE R L K Sbjct: 60 PEARVLLITPFDKSILKDIERALNASDLGLTPQSDGTVIRLVIPALTEETRKNLAKDVKK 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E SK+++RNIRRD MD KK+ K+ + +ED + +LE DIQK+TD IK ID +K+ Sbjct: 120 VGENSKVAIRNIRRDAMDEAKKAEKAKEITEDELKTLEKDIQKVTDDAIKTIDKMTADKE 179 Query: 181 KEIMHF 186 KE++ Sbjct: 180 KELLEV 185 >gi|257869600|ref|ZP_05649253.1| ribosome recycling factor [Enterococcus gallinarum EG2] gi|257803764|gb|EEV32586.1| ribosome recycling factor [Enterococcus gallinarum EG2] Length = 185 Score = 226 bits (578), Expect = 9e-58, Method: Composition-based stats. Identities = 74/180 (41%), Positives = 115/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L KD+M L++++ +R GR + S+LD V V YG PLNQ+A++T+ E R+L Sbjct: 6 LTEAKDKMKKAAENLQRELGQIRAGRANASILDRVMVTYYGVPTPLNQMASITIPEARIL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK M+ VE+ I +S++G+ P +G V+R+ +P+ TEERR L K AE +K Sbjct: 66 MITPFDKTMIQEVEKAIMQSDIGITPANDGTVIRLVIPQLTEERRKELAKDVKKEAENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I+VRNIRRD MD KK KSG + D + E ++Q +TD++IK ID EK++E++ Sbjct: 126 IAVRNIRRDAMDAYKKQEKSGDITVDDLRESEKEVQTLTDNSIKEIDQIAAEKEQELLEV 185 >gi|190360295|sp|A8F0R2|RRF_RICM5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor Length = 186 Score = 226 bits (578), Expect = 9e-58, Method: Composition-based stats. Identities = 85/179 (47%), Positives = 122/179 (68%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N++ +M + L ++ LRTGR S ++LD V VEAYGS +PL+QVA+++ + R + Sbjct: 8 KNLQGKMEKALKVLDHELKGLRTGRASINLLDSVTVEAYGSKMPLSQVASLSTPDARTIN 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V VWDK MV+SVE+GI +NLGL P +GQ++R+P+P TEERR LVK+AH Y E +KI Sbjct: 68 VQVWDKSMVSSVEKGITIANLGLTPATDGQLIRLPIPTLTEERRQELVKLAHKYGEDTKI 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RNIRRDG + LKK K ++D SL +QK+TD +DS ++K++EIM Sbjct: 128 SLRNIRRDGNEELKKLEKDNVIAKDEHHSLSEQVQKLTDDYSSKVDSVIKQKEQEIMTV 186 >gi|317508973|ref|ZP_07966606.1| ribosome recycling protein [Segniliparus rugosus ATCC BAA-974] gi|316252738|gb|EFV12175.1| ribosome recycling protein [Segniliparus rugosus ATCC BAA-974] Length = 185 Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 63/180 (35%), Positives = 106/180 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++RM + K + +RTGR + S+ V V+ YG+ P+ QV++V +PR++ Sbjct: 6 LFEAEERMELAVEVAKDEFAAIRTGRATASLFAKVVVDYYGTPTPIPQVSSVQTPDPRLV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ ++ + ++E I +S+LGLNP +GQV+R+ +P TEERR K A AE+++ Sbjct: 66 VIKPYEASQLRAIEEAIQKSDLGLNPSNDGQVVRVAIPALTEERRKEFAKQARGKAEEAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RR D L K K G+A ED V E ++ K+T + ID ++K+ E++ Sbjct: 126 VTVRNVRRKANDQLGKLAKEGQAGEDDVVRAEKELDKLTAKFVGTIDELVKKKEAELLEV 185 >gi|224540949|ref|ZP_03681488.1| hypothetical protein CATMIT_00100 [Catenibacterium mitsuokai DSM 15897] gi|224526100|gb|EEF95205.1| hypothetical protein CATMIT_00100 [Catenibacterium mitsuokai DSM 15897] Length = 181 Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 119/180 (66%), Gaps = 4/180 (2%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ K++M ++ +++ +RTGR +PSMLD V VE YGS PLNQVA ++V+E R L Sbjct: 6 LEEAKEKMEKSVEAFSNELVNIRTGRANPSMLDRVMVEYYGSPTPLNQVAGISVVEGRQL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +DK + +E GI++++LGL P +G V+RI +P TEERR +VK + AE++K Sbjct: 66 VIKPYDKNSMKDIEHGIYQADLGLTPQNDGTVIRIVIPPLTEERRKEMVKQVNKLAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRR+ + K+G+ +ED V + + D+Q +T+ +K ID +EK+K++M Sbjct: 126 VALRNIRRNANTDV---EKTGE-TEDEVKAGKEDVQDLTNEFVKKIDQIAKEKEKDLMTV 181 >gi|227872428|ref|ZP_03990772.1| ribosome recycling factor [Oribacterium sinus F0268] gi|227841725|gb|EEJ52011.1| ribosome recycling factor [Oribacterium sinus F0268] Length = 184 Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 74/175 (42%), Positives = 109/175 (62%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 ++M T L ++ T+R GR +P +LD + V+ YG+ P+ QV NV+V E R+L + W Sbjct: 10 EKMHKTHDNLMSELGTIRAGRANPHVLDRIMVDYYGTPTPIQQVGNVSVPEARILQIQPW 69 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 DK ++ +E+ I+ S LG+NP +GQV+R+ PE TEERR L K E +KI++RN Sbjct: 70 DKSVMKEIEKAINMSELGINPTNDGQVIRLVFPELTEERRKELTKDVKKKGEAAKIAIRN 129 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 IRRD MD KK K+ + +ED ++ DIQ++TD I+ ID E K KE+M Sbjct: 130 IRRDAMDLAKKLEKNAEITEDDLSRQTKDIQELTDHMIEKIDKSVEAKNKELMTV 184 >gi|190360294|sp|A9M3S1|RRF_NEIM0 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|325131044|gb|EGC53769.1| ribosome recycling factor [Neisseria meningitidis OX99.30304] Length = 185 Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 73/179 (40%), Positives = 112/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + + +M ++ LK+++ +RTGR +LD V+VE +GS VP++QVANVT+L+ R + Sbjct: 7 KTAEGKMQRSVEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVANVTLLDARTIG 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V ++ M VE+ I +SNLGLNP G ++R+P+P TEERR L+KV AE+ ++ Sbjct: 67 VKPFEGNMAVKVEKAIRDSNLGLNPAAVGDLIRVPMPMLTEERRKDLIKVVRGEAEEGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RN+RRD DH+KK K + SED E +QK+TD I D K++++M Sbjct: 127 SIRNVRRDANDHIKKLLKDKEISEDEARRGEEAVQKLTDKYITEADKLLTAKEEDLMAI 185 >gi|48474737|sp|Q8VS52|RRF_LACRE RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|18139798|gb|AAL60144.1|AF401482_3 ribosome recycling factor [Lactobacillus reuteri] Length = 186 Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 75/178 (42%), Positives = 118/178 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L KD+M + L++ + +R GR + S+L+ VKV+ YG+ PLNQVA++T+ E R L Sbjct: 8 LNEAKDKMAKSGDALRRTLADIRAGRANASLLNGVKVDYYGAPTPLNQVASITIPEARQL 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +D+ + ++E+ I+ +NLGL P +G +RI +P+ TEERR LVK A EK+K Sbjct: 68 LVTPYDESSLDNIEKAIYAANLGLTPQNDGSAIRILIPQLTEERRKELVKDVKAELEKAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++VRN+RR+ MD LKK K G ++D LE +Q TD+ IKN+++ +K+KE+M Sbjct: 128 VAVRNVRREAMDDLKKGNKDGDFNDDEFHDLEKKVQTETDNGIKNLENIAADKEKELM 185 >gi|256419436|ref|YP_003120089.1| ribosome recycling factor [Chitinophaga pinensis DSM 2588] gi|256034344|gb|ACU57888.1| ribosome recycling factor [Chitinophaga pinensis DSM 2588] Length = 187 Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 72/178 (40%), Positives = 111/178 (62%), Gaps = 1/178 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +++ M I L+ ++ +R G+ +P +LD + V+ YGS PL QVAN+TV + R L Sbjct: 9 IEDATATMRKAIGHLESELTKIRAGKANPQILDGITVDYYGSPTPLAQVANITVADARTL 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V W+K M+ +ER I SN+G+NP +G ++R+ +P TEERR VK A E++K Sbjct: 69 TVQPWEKNMLQPIERAIIASNIGINPQNDGIIIRMFLPPLTEERRKEFVKRALNEGEQAK 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 I++RNIRRD ++ +KK +K G SED E D+Q +T+ I+ +D +K+KEIM Sbjct: 129 IAIRNIRRDAIEGIKKLQKDG-LSEDTAKDAEADVQNLTNKYIELVDKHTAQKEKEIM 185 >gi|113477237|ref|YP_723298.1| ribosome recycling factor [Trichodesmium erythraeum IMS101] gi|123160353|sp|Q10Y49|RRF_TRIEI RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|110168285|gb|ABG52825.1| ribosome recycling factor [Trichodesmium erythraeum IMS101] Length = 182 Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 63/178 (35%), Positives = 104/178 (58%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 ++L+ +++M I K T+RTGR + S+LD V VE YGS L +AN+ + + Sbjct: 1 MNLKEAEEKMQKAIEATKNSFNTVRTGRANASLLDRVMVEYYGSPTQLKSMANIGIPDAS 60 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 + + +DK + +E+ I+ S++GL P +G ++R+ +P T ERR +VK AE+ Sbjct: 61 TITIQPYDKTSLGLIEKAINMSDVGLTPNNDGSIIRLNIPALTAERRQEMVKKTAKLAEE 120 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 K+S+RNIRRD +D ++K K+ S+D L++ +QK TD I ID K+K+ Sbjct: 121 GKVSIRNIRRDAVDSIRKQEKNSDISKDESRDLQDKVQKKTDKYIAKIDELLAAKEKD 178 >gi|148380389|ref|YP_001254930.1| ribosome recycling factor [Clostridium botulinum A str. ATCC 3502] gi|153933414|ref|YP_001384607.1| ribosome recycling factor [Clostridium botulinum A str. ATCC 19397] gi|153934708|ref|YP_001388123.1| ribosome recycling factor [Clostridium botulinum A str. Hall] gi|166230778|sp|A7FPZ5|RRF_CLOB1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166230779|sp|A5I4K9|RRF_CLOBH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|148289873|emb|CAL83981.1| ribosome recycling factor [Clostridium botulinum A str. ATCC 3502] gi|152929458|gb|ABS34958.1| ribosome recycling factor [Clostridium botulinum A str. ATCC 19397] gi|152930622|gb|ABS36121.1| ribosome recycling factor [Clostridium botulinum A str. Hall] Length = 184 Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 78/180 (43%), Positives = 120/180 (66%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ ++MG TI LKK++ +++ GR +P+MLD ++ E YGS PLNQ+ N++V E R+L Sbjct: 6 LKKADEKMGKTIVALKKELASMKAGRANPAMLDRIEAEYYGSMTPLNQLGNISVPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WDK ++++E+ I +S+LGLNP +G V+R+ +PE TEE R +VK E++K Sbjct: 66 LIQPWDKGALSAIEKAILKSDLGLNPSNDGTVIRLVIPELTEETRKNIVKTVKKTGEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++R+IRRD D +K +K SED + E+DIQK TD IK IDS K+KEI+ Sbjct: 126 VAIRSIRRDCNDDVKNLKKD-DVSEDDIKKAEDDIQKKTDKYIKEIDSIISAKEKEILSI 184 >gi|311694060|gb|ADP96933.1| ribosome recycling factor [marine bacterium HP15] Length = 185 Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 69/170 (40%), Positives = 101/170 (59%) Query: 17 TISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMV 76 ++ L +RTGR PS+LD V V YG PL QVA+V V + R L VS W+K ++ Sbjct: 16 SLESLNSAFNKIRTGRAHPSILDSVMVNYYGQETPLKQVASVNVEDNRTLTVSPWEKNLM 75 Query: 77 ASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDG 136 ++E+ I S+LGLNP G ++RIP+P TEE R +VK A A AE ++S+RN RRD Sbjct: 76 PTIEKAIMASDLGLNPATSGDIIRIPMPMLTEETRKEMVKQAKADAEHGRVSIRNARRDA 135 Query: 137 MDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +K K + +ED E+DIQK+TD I ++ + K++++M Sbjct: 136 NSMIKDLLKEKEITEDDERKGEDDIQKLTDRYIAEVEKMLKAKEEDLMAV 185 >gi|62263467|gb|AAX78163.1| unknown protein [synthetic construct] Length = 220 Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 71/188 (37%), Positives = 114/188 (60%), Gaps = 2/188 (1%) Query: 1 MNQVID--LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 M ++I+ L++ ++RM ++ L D+ +RTGR P +L V ++ YG P+ Q AN+ Sbjct: 24 MLEMINDILKDAENRMKKSLEVLADDLAKIRTGRAQPDLLAHVTIDYYGVETPITQAANI 83 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 TVL+ R L ++ W+K + + +E+ I S+LGLNP G LR+P+P EERR LVK+ Sbjct: 84 TVLDARTLGITPWEKGLSSKIEKAILTSDLGLNPTNLGDSLRVPMPALNEERRKELVKLV 143 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 + E ++S+RNIRRD +K+ K + +ED E+DIQKITD I D+ + Sbjct: 144 KSETEAGRVSIRNIRRDANGDIKELLKEKEITEDQAKKAEDDIQKITDKMIAQADALAAK 203 Query: 179 KKKEIMHF 186 K++++M Sbjct: 204 KEQDLMAV 211 >gi|328675398|gb|AEB28073.1| Ribosome recycling factor [Francisella cf. novicida 3523] Length = 185 Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 70/186 (37%), Positives = 114/186 (61%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ L++ ++RM ++ L D+ +RTGR P +L V ++ YG P++Q AN+TV Sbjct: 2 INEI--LKDAENRMKKSLEVLADDLAKIRTGRAHPDLLAHVTIDYYGVETPISQAANITV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 L+ R L ++ W+K + + +E+ I S+LGLNP G LR+P+P EERR LVK+ + Sbjct: 60 LDARTLGITPWEKGLSSKIEKAILTSDLGLNPTNLGDSLRVPMPALNEERRKELVKLVKS 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E ++S+RNIRRD +K+ K + +ED E+DIQKITD I D+ +K+ Sbjct: 120 ETEAGRVSIRNIRRDANGDIKELLKEKEITEDQAKKAEDDIQKITDKMIAQADALAAKKE 179 Query: 181 KEIMHF 186 +++M Sbjct: 180 QDLMAV 185 >gi|93006537|ref|YP_580974.1| ribosome recycling factor [Psychrobacter cryohalolentis K5] gi|122415111|sp|Q1QA13|RRF_PSYCK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|92394215|gb|ABE75490.1| ribosome recycling factor [Psychrobacter cryohalolentis K5] Length = 184 Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 77/179 (43%), Positives = 112/179 (62%), Gaps = 1/179 (0%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ + RM T+ L+ +RTGR P ML V V YGS PLNQVA+V V + R L+ Sbjct: 7 QDGEARMQKTLEALESTFSKVRTGRAHPGMLTGVMVSYYGSPTPLNQVASVNVEDSRTLL 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +D+ MV ++++ I E++LGLNP+ V+R+P+P TEE R + K+A AE S++ Sbjct: 67 VQPFDRTMVQAIDKAIREADLGLNPMTA-DVIRVPMPALTEETRKDMQKLARGEAENSRV 125 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RNIRRD M+ +K+ K + SED +DIQKITD I+ IDS +K+ ++M Sbjct: 126 SIRNIRRDMMNDIKELAKEKEISEDDERRASDDIQKITDKYIETIDSRLSKKETDLMAV 184 >gi|227488622|ref|ZP_03918938.1| ribosome recycling factor [Corynebacterium glucuronolyticum ATCC 51867] gi|227543226|ref|ZP_03973275.1| ribosome recycling factor [Corynebacterium glucuronolyticum ATCC 51866] gi|227091516|gb|EEI26828.1| ribosome recycling factor [Corynebacterium glucuronolyticum ATCC 51867] gi|227181035|gb|EEI62007.1| ribosome recycling factor [Corynebacterium glucuronolyticum ATCC 51866] Length = 185 Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 76/180 (42%), Positives = 115/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + +RM T+ ++++ +RTGR +PSM + V E YG P+NQ+A ++V EPRML Sbjct: 6 ILEADERMEATVDHTREELSHIRTGRANPSMFNGVIAEFYGQPTPINQMATISVPEPRML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D + +ER I S+LG+NP +GQVLR+ VP+ TEERR +VKVA + E+ K Sbjct: 66 LIKPYDMNSMDDIERAIRNSDLGVNPTNDGQVLRVTVPQLTEERRREMVKVAKSKGEEGK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIRR GMD LKK +K G A ED V + E ++ K+T ++ E K+K++M Sbjct: 126 IAIRNIRRKGMDQLKKIQKDGDAGEDEVQAGEKELDKVTKKNETRVEELVEAKEKDLMEV 185 >gi|223933844|ref|ZP_03625811.1| ribosome recycling factor [Streptococcus suis 89/1591] gi|223897495|gb|EEF63889.1| ribosome recycling factor [Streptococcus suis 89/1591] Length = 185 Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 77/186 (41%), Positives = 119/186 (63%), Gaps = 1/186 (0%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M++ I + +DRM + L ++ +R GR + S+LD + VE YGS PLNQ+A +TV Sbjct: 1 MSKEI-IAKAQDRMNQSHQSLAREFSHIRAGRANASLLDRISVEYYGSPTPLNQLAGITV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R+L+++ +DK ++ +ER ++ S+LGL P +G V+R+ +P TEE R L K Sbjct: 60 PEARVLLITPFDKSILKDIERALNASDLGLTPQSDGTVIRLVIPALTEETRKNLAKDVKK 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E SK+++RNIRRD MD KK+ K+ + +ED + +LE DIQK+TD IK ID +K+ Sbjct: 120 VGENSKVAIRNIRRDAMDEAKKAEKAKEITEDELKTLEKDIQKVTDDAIKTIDKMTADKE 179 Query: 181 KEIMHF 186 KE++ Sbjct: 180 KELLEV 185 >gi|159036877|ref|YP_001536130.1| ribosome recycling factor [Salinispora arenicola CNS-205] gi|189044070|sp|A8M6B4|RRF_SALAI RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|157915712|gb|ABV97139.1| ribosome recycling factor [Salinispora arenicola CNS-205] Length = 185 Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 61/180 (33%), Positives = 106/180 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M I K++ +RTGR + +M + ++ YGS PL Q+A++ V EPRM+ Sbjct: 6 LLEAEEKMERAIEHAKEEFGAIRTGRANAAMFSKIIIDYYGSPTPLPQMASIGVPEPRMV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D ++E+ I +S+LG+NP EG LRI +P+ TEERR ++KVA E++K Sbjct: 66 IIKPYDNSQTNAMEKAIRDSDLGVNPNNEGNQLRILLPQMTEERRREMIKVARHKGEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRR + L + K+G+ ED E ++ +T + +D + K+ E++ Sbjct: 126 VAVRNIRRKAKEELDRLVKAGEVGEDEGRRAEKELDDLTQRFVGVVDELIKHKEAELLEV 185 >gi|189425767|ref|YP_001952944.1| ribosome recycling factor [Geobacter lovleyi SZ] gi|238692131|sp|B3E719|RRF_GEOLS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|189422026|gb|ACD96424.1| ribosome recycling factor [Geobacter lovleyi SZ] Length = 185 Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 70/180 (38%), Positives = 109/180 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + +K M ++ L+K+ +RTGR S S+LD VKV+ YG+ L+QVA + V EPR + Sbjct: 6 ITEMKAHMEKSVEDLRKEYQRIRTGRASTSLLDEVKVDYYGNPSSLSQVATLAVPEPRTI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ W+ +M+ +E+ I +NLGL P +G+++R+ +P TEERR +VK E K Sbjct: 66 TITPWESKMIGPIEKAILNANLGLTPGNDGKLIRLNLPPLTEERRKEIVKGMKKMDEDHK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRR +D LKK K +ED + E ++Q +TDS I +D K+KE+M Sbjct: 126 VAVRNIRRKAIDDLKKMEKDKSITEDELKKAEKEVQTVTDSIIAKLDEILAHKEKEVMEV 185 >gi|220912157|ref|YP_002487466.1| ribosome recycling factor [Arthrobacter chlorophenolicus A6] gi|254809488|sp|B8HFN8|RRF_ARTCA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|219859035|gb|ACL39377.1| ribosome recycling factor [Arthrobacter chlorophenolicus A6] Length = 185 Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 59/180 (32%), Positives = 104/180 (57%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K+D ++RTGR +P + + V V+ YGS PL Q+A+ + + R + Sbjct: 6 LLEAEEKMDKAVEVAKEDFASIRTGRANPGLYNRVLVDYYGSPTPLQQLASFAIPDARTI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK + +ER + +S +G NP +G V+RI +PE T+ERR VK+ E +K Sbjct: 66 LITPFDKTALRDIERALSDSEVGANPSNDGNVIRITIPELTKERRKEYVKIVKTKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+RNIRR + L + K G+A ED E ++ +T + + ID + K+ E++ Sbjct: 126 VSIRNIRRKAKEALDRLVKDGEAGEDEGTRAEKELDGLTKAHVDGIDELLKRKEAELLEV 185 >gi|120555456|ref|YP_959807.1| ribosome recycling factor [Marinobacter aquaeolei VT8] gi|120325305|gb|ABM19620.1| ribosome recycling factor [Marinobacter aquaeolei VT8] gi|302608192|emb|CBW44445.1| ribosome recycling factor [Marinobacter hydrocarbonoclasticus] Length = 196 Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 67/170 (39%), Positives = 102/170 (60%) Query: 17 TISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMV 76 ++ L +RTGR P++LD V V YG PL QVA+V V + R L V+ W+K +V Sbjct: 27 SLEALHSAFNKIRTGRAHPAILDSVMVNYYGQETPLKQVASVNVEDNRTLTVAPWEKNLV 86 Query: 77 ASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDG 136 ++E+ I S+LGLNP G ++R+P+P TEE R +VK A A AE ++S+RN RRD Sbjct: 87 PTIEKAIMTSDLGLNPATSGDIIRVPMPMLTEETRKEMVKQAKADAEHGRVSIRNARRDA 146 Query: 137 MDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +K+ K + SED E++IQK+TD I ++ + K++++M Sbjct: 147 NHMIKELVKEKEISEDDQHRGEDEIQKLTDKYIAEVEKMLKSKEEDLMAV 196 >gi|315121993|ref|YP_004062482.1| ribosome recycling factor [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495395|gb|ADR51994.1| ribosome recycling factor [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 186 Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 157/186 (84%), Positives = 171/186 (91%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 MNQ IDL++IKDRM D ISFLKKDMMTLRTGRVS SMLDLVKV++YGS VPLNQVANVTV Sbjct: 1 MNQAIDLKSIKDRMNDAISFLKKDMMTLRTGRVSTSMLDLVKVDSYGSRVPLNQVANVTV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 L+PR L VSVWD MV+SVERGIH+SNLG NPIVEGQVLRIPVPETTEERRLALVKVAH Sbjct: 61 LDPRTLAVSVWDSSMVSSVERGIHDSNLGFNPIVEGQVLRIPVPETTEERRLALVKVAHN 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAEKSKISVRNIRRDGMD+LKKS+KSGK SED+ SLEND+QK+TD+TIK+IDSFFEEKK Sbjct: 121 YAEKSKISVRNIRRDGMDYLKKSKKSGKISEDIAESLENDVQKMTDATIKDIDSFFEEKK 180 Query: 181 KEIMHF 186 KEIM F Sbjct: 181 KEIMRF 186 >gi|332296167|ref|YP_004438090.1| Ribosome-recycling factor [Thermodesulfobium narugense DSM 14796] gi|332179270|gb|AEE14959.1| Ribosome-recycling factor [Thermodesulfobium narugense DSM 14796] Length = 185 Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 79/180 (43%), Positives = 126/180 (70%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 ++++++ RM + L K+ ++RTGR SP++LD VKV+ YG+ VP+ Q+ANV+ + R Sbjct: 5 EIEHLRQRMSKAVDNLSKEFASVRTGRASPALLDHVKVDYYGTTVPIKQLANVSQQDART 64 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 L+++V+DK + +V++ I S+LGL P V+G VLRI +P T+ERR LVKV AE++ Sbjct: 65 LLINVYDKNALQAVDKAIRLSDLGLTPQVDGMVLRIVIPTLTQERRKELVKVVKKMAEEA 124 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +++VRNIRRD ++ L+K K+ + SED + +N+ QKITDS I+ ID K+KEI++ Sbjct: 125 RVAVRNIRRDELEILEKRAKNKEISEDDLKRFKNEFQKITDSYIQEIDKLLSNKEKEILN 184 >gi|307722053|ref|YP_003893193.1| ribosome recycling factor [Sulfurimonas autotrophica DSM 16294] gi|306980146|gb|ADN10181.1| ribosome recycling factor [Sulfurimonas autotrophica DSM 16294] Length = 185 Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 63/186 (33%), Positives = 115/186 (61%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ + + +M +I +++D TLRTG+V+ S+LD VK++ YG+ PL+QV +V Sbjct: 2 LNEIFN--ECETKMQGSIEHMQRDFKTLRTGKVTTSVLDNVKIDYYGTPTPLDQVGSVLA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + +V++ W+K ++ +E I+ +N+G+NP +G ++++ P T E+R VK Sbjct: 60 ADATTIVINPWEKNLLPDIESAINAANIGVNPNNDGDLIKLFFPPMTVEQRQESVKKMKT 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E +K+S+RN RRD D +KK K + ++D S ++++QKITD I +DS ++K+ Sbjct: 120 MGENAKVSIRNDRRDANDKIKKLEKDKEITQDESKSAQDNVQKITDKYITKVDSILKDKE 179 Query: 181 KEIMHF 186 EI+ Sbjct: 180 AEILKV 185 >gi|153940196|ref|YP_001391730.1| ribosome recycling factor [Clostridium botulinum F str. Langeland] gi|166230780|sp|A7GG20|RRF_CLOBL RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|152936092|gb|ABS41590.1| ribosome recycling factor [Clostridium botulinum F str. Langeland] gi|295319756|gb|ADG00134.1| ribosome recycling factor [Clostridium botulinum F str. 230613] Length = 184 Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats. Identities = 76/180 (42%), Positives = 120/180 (66%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ ++MG TI LK+++ +++ GR +P+MLD ++ E YGS PLNQ+ N+++ E R+L Sbjct: 6 LKKADEKMGKTIVALKRELASMKAGRANPAMLDRIEAEYYGSMTPLNQLGNISIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WDK ++++E+ I +S+LGLNP +G V+R+ +PE TEE R +VK E++K Sbjct: 66 LIQPWDKSALSAIEKAILKSDLGLNPSNDGTVIRLVIPELTEETRKNIVKTVKKTGEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++R+IRRD D +K +K SED + E+DIQK TD IK IDS K+KEI+ Sbjct: 126 VAIRSIRRDCNDDVKNLKKD-DVSEDDIKKAEDDIQKKTDKYIKEIDSIISAKEKEILSI 184 >gi|217967587|ref|YP_002353093.1| ribosome recycling factor [Dictyoglomus turgidum DSM 6724] gi|217336686|gb|ACK42479.1| ribosome recycling factor [Dictyoglomus turgidum DSM 6724] Length = 185 Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats. Identities = 75/180 (41%), Positives = 115/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + I+++M + +KK+ +RTG+ S + D +KV YG+ +PLNQVA + V E R + Sbjct: 6 FKEIEEKMKKAVEVVKKEFQNIRTGKPSVGIFDEIKVSYYGNMMPLNQVATLKVAEGRTV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WDK ++ +E+ I +S LGL P +GQV+R+ P TEERR LVK+ H AE + Sbjct: 66 LIQPWDKSIIGEIEKAILKSELGLTPQNDGQVIRVVFPPLTEERRKELVKIVHKEAETGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD ++ KK ++ GK SED L+ ++QKITD I+ I+ E K+KEIM Sbjct: 126 VAIRNIRRDYLEIFKKEKQEGKISEDEFYRLQEELQKITDKFIEEIEKLIEMKEKEIMEV 185 >gi|57234843|ref|YP_181120.1| ribosome recycling factor [Dehalococcoides ethenogenes 195] gi|123618956|sp|Q3Z9H9|RRF_DEHE1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|57225291|gb|AAW40348.1| ribosome recycling factor [Dehalococcoides ethenogenes 195] Length = 185 Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats. Identities = 63/186 (33%), Positives = 116/186 (62%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ LQ + +M ++ L +++ +RTGR SP++++ +KVE G P+N +A++ Sbjct: 2 INEI--LQKSEKKMAASLDVLSQELSGIRTGRSSPALVEHIKVEYAGVPTPINHLASIAA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 +PR + + WD+ ++++E+ I +S+LGL P +G ++R+ +P +EERR ++K+ Sbjct: 60 PDPRYITIQPWDRSCLSAIEKAIMKSDLGLMPNNDGNIIRLNIPPLSEERRQEMIKMVSK 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E+ KI++RN+RRD MD +KK KS + S+D + + +QKITDS I D +K+ Sbjct: 120 RLEEDKIAMRNVRRDAMDEMKKLEKSKEISQDDLKRGSDQLQKITDSFIAKADKLGADKE 179 Query: 181 KEIMHF 186 E+ Sbjct: 180 TELKQV 185 >gi|325474924|gb|EGC78110.1| ribosome-recycling factor [Treponema denticola F0402] Length = 185 Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats. Identities = 77/178 (43%), Positives = 120/178 (67%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N +++M T++ LK++ LRTGR S ++ D ++V YG PLNQ+AN+++ E R++V Sbjct: 7 KNCEEKMKKTVAALKEEFNMLRTGRASSALFDKIRVNCYGESTPLNQLANISIPEARLVV 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + WDK ++ +E+ + +++L +NP +G+V+RI +P TE+RR L K A AE S++ Sbjct: 67 IQPWDKGLLVEIEKAVLQADLSVNPTNDGKVIRIAIPPLTEDRRKDLAKKAKTIAENSRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 SVRNIRRDG+D KK +K GK SED + + E+ QK TD+ I I+ E K+KEIM Sbjct: 127 SVRNIRRDGIDEAKKLQKDGKISEDQLKTAEDAFQKSTDAYIAEINKVLEAKEKEIME 184 >gi|94263226|ref|ZP_01287043.1| Ribosome recycling factor [delta proteobacterium MLMS-1] gi|93456444|gb|EAT06564.1| Ribosome recycling factor [delta proteobacterium MLMS-1] Length = 184 Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats. Identities = 73/186 (39%), Positives = 123/186 (66%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M++VI + ++M ++ ++++ +RTGR S ++LD +KVEAYGS +PLNQVA +T+ Sbjct: 1 MDEVI--LEMSEKMEQSLEAYRRELSRIRTGRASLNILDGIKVEAYGSQLPLNQVATLTI 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E RM+V+ WD + ++E+ I S++GL P +G+V+R+ +P+ TEERR LVK Sbjct: 59 PESRMIVIQPWDAQQGKAIEKAIQASDIGLTPSSDGKVIRLTIPQLTEERRKDLVKQLKK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 +E+ +++VRN+RR+ +D LKK + + ED L+++ QK TD+ I ID+ +K+ Sbjct: 119 LSEEYRVAVRNVRREAIDRLKKLKNDKQLPEDDFFRLQDEAQKETDAAIAKIDTIMADKE 178 Query: 181 KEIMHF 186 KE+M Sbjct: 179 KELMEV 184 >gi|116629461|ref|YP_814633.1| ribosome recycling factor [Lactobacillus gasseri ATCC 33323] gi|238852611|ref|ZP_04643021.1| ribosome recycling factor [Lactobacillus gasseri 202-4] gi|311110891|ref|ZP_07712288.1| ribosome recycling factor [Lactobacillus gasseri MV-22] gi|122273601|sp|Q044C7|RRF_LACGA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|116095043|gb|ABJ60195.1| ribosome recycling factor [Lactobacillus gasseri ATCC 33323] gi|238834757|gb|EEQ26984.1| ribosome recycling factor [Lactobacillus gasseri 202-4] gi|311066045|gb|EFQ46385.1| ribosome recycling factor [Lactobacillus gasseri MV-22] Length = 185 Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats. Identities = 74/182 (40%), Positives = 115/182 (63%), Gaps = 2/182 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 N+VI + KD M +I+ +K++ +R G + S+L+ +KV+ YG PL Q+++V++ Sbjct: 3 NEVI--EKAKDNMKKSIAVFQKELGGIRAGVANASLLEGIKVDYYGVPTPLTQMSSVSIP 60 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 E R+L+V+ +DK + +E I S+LG+ P +G V+RI +P+ T ERR + K Sbjct: 61 EARVLMVTPYDKSSLDDIEHAILASDLGITPANDGTVIRIVIPQLTGERRQEIAKQVGKL 120 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 AEK KI+VRN+RRD MD LK+ K+G +ED SLE +QK+TD K ID ++K + Sbjct: 121 AEKGKIAVRNVRRDAMDTLKRQEKNGDITEDEQRSLEKQVQKVTDDATKEIDKLADQKSQ 180 Query: 182 EI 183 EI Sbjct: 181 EI 182 >gi|163839290|ref|YP_001623695.1| ribosome recycling factor [Renibacterium salmoninarum ATCC 33209] gi|189044067|sp|A9WL12|RRF_RENSM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|162952766|gb|ABY22281.1| ribosome recycling factor [Renibacterium salmoninarum ATCC 33209] Length = 185 Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats. Identities = 61/180 (33%), Positives = 103/180 (57%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K+D +RTGR +P + V V+ YG+ PL Q+A+ V E R L Sbjct: 6 LLEAEEKMDKAVEVAKEDFSAVRTGRANPGLFAKVMVDYYGAPTPLQQLASFAVPEARTL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +D+ + +E+ + S +G NP +G V+R+ +PE T+ERR VK+ +E +K Sbjct: 66 LITPFDRSALGDIEKALSNSEVGANPSNDGNVIRVVMPELTQERRREYVKIVRGKSEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 IS+RNIRR + L K K G A ED + E ++ +T + +NID + K+ E++ Sbjct: 126 ISIRNIRRKAKESLDKIVKDGDAGEDEGSRAEKELDGLTKTHTENIDELLKRKEAELLEV 185 >gi|170760155|ref|YP_001787743.1| ribosome recycling factor [Clostridium botulinum A3 str. Loch Maree] gi|238688518|sp|B1KWM1|RRF_CLOBM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|169407144|gb|ACA55555.1| ribosome recycling factor [Clostridium botulinum A3 str. Loch Maree] Length = 184 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 77/180 (42%), Positives = 119/180 (66%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ ++MG +I LK+++ +++ GR +P+MLD + E YGS PLNQ+AN++V E R+L Sbjct: 6 LKKADEKMGKSIVALKRELASMKAGRANPAMLDRIDAEYYGSMTPLNQLANISVPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WDK + ++E+ I +S+LGLNP +G V+R+ +PE TEE R +VK E++K Sbjct: 66 LIQPWDKSSMGAIEKAILKSDLGLNPSNDGTVIRLVIPELTEETRKNIVKTVKKTGEETK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++R+IRRD D +K +K SED + E+DIQK TD IK IDS K+KEI+ Sbjct: 126 VAIRSIRRDCNDDVKNLKKD-DVSEDDIKKTEDDIQKKTDKYIKEIDSIISAKEKEILSI 184 >gi|300361909|ref|ZP_07058086.1| ribosome recycling factor [Lactobacillus gasseri JV-V03] gi|300354528|gb|EFJ70399.1| ribosome recycling factor [Lactobacillus gasseri JV-V03] Length = 185 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 74/182 (40%), Positives = 115/182 (63%), Gaps = 2/182 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 N+VI + KD M +I+ +K++ +R G + S+L+ +KV+ YG PL Q+++V++ Sbjct: 3 NEVI--EKAKDNMKKSIAVFQKELGGIRAGVANASLLEGIKVDYYGVPTPLTQMSSVSIP 60 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 E R+L+V+ +DK + +E I S+LG+ P +G V+RI +P+ T ERR + K Sbjct: 61 EARVLMVTPYDKSSLDDIEHAILASDLGITPANDGSVIRIVIPQLTGERRQEIAKQVGKL 120 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 AEK KI+VRN+RRD MD LK+ K+G +ED SLE +QK+TD K ID ++K + Sbjct: 121 AEKGKIAVRNVRRDAMDTLKRQEKNGDITEDEQRSLEKQVQKVTDDATKEIDKLADQKSQ 180 Query: 182 EI 183 EI Sbjct: 181 EI 182 >gi|108761597|ref|YP_633491.1| ribosome recycling factor [Myxococcus xanthus DK 1622] gi|123247456|sp|Q1D1I2|RRF_MYXXD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|108465477|gb|ABF90662.1| ribosome recycling factor [Myxococcus xanthus DK 1622] Length = 185 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 64/180 (35%), Positives = 113/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + +K R+ ++ L+ D+ +RTGR S ++L+ V+V+ YG+ PL+ VA+V EPR++ Sbjct: 6 VAELKGRIDKSLEGLRTDLTRVRTGRASIAILEGVRVDYYGTPTPLSGVASVNAPEPRLI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + W+K ++ +E+ + E+NLG+NP+ +G+++R+P P TEERR + K E+ K Sbjct: 66 TIKPWEKSVLKDIEKALREANLGINPMNDGEMIRLPFPPLTEERRKDIAKQVKTKGEEFK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RN+RRD + LK K K +ED + +QK TD+ I +D ++K+KE+M Sbjct: 126 VTIRNLRRDANEVLKTQLKDKKITEDDHKRITEVVQKQTDAGITQVDEIVKKKEKEVMEV 185 >gi|224283164|ref|ZP_03646486.1| ribosome recycling factor [Bifidobacterium bifidum NCIMB 41171] gi|310287530|ref|YP_003938788.1| ribosome recycling factor RRF [Bifidobacterium bifidum S17] gi|311064443|ref|YP_003971168.1| ribosome recycling factor Rrf [Bifidobacterium bifidum PRL2010] gi|313140313|ref|ZP_07802506.1| ribosome recycling factor [Bifidobacterium bifidum NCIMB 41171] gi|309251466|gb|ADO53214.1| ribosome recycling factor RRF [Bifidobacterium bifidum S17] gi|310866762|gb|ADP36131.1| Rrf Ribosome Recycling Factor [Bifidobacterium bifidum PRL2010] gi|313132823|gb|EFR50440.1| ribosome recycling factor [Bifidobacterium bifidum NCIMB 41171] Length = 184 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 69/180 (38%), Positives = 111/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K++M ++ K++ +RTGR +P++L+ + V+ YG+ PL VA++ V EPR L Sbjct: 5 VEQAKEQMNKSVENTKENFAGIRTGRANPALLNGIVVDYYGAPTPLKAVASIGVPEPRTL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +D + VE+ + +S+LG+NP +G V+RI +PE T ERR VK+A + AE K Sbjct: 65 SVTPFDVSQASKVEKALRDSDLGVNPNRDGNVIRITMPELTSERRKEYVKLAKSKAEDGK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRR + + KS K G+ ED L ++ K+T +D+ FE K+KEIM Sbjct: 125 VAVRNIRRKAKETIDKSVKDGEMGEDEGDRLLKELDKVTKQVTDQLDALFETKQKEIMEV 184 >gi|282855676|ref|ZP_06264985.1| ribosome recycling factor [Pyramidobacter piscolens W5455] gi|282586476|gb|EFB91735.1| ribosome recycling factor [Pyramidobacter piscolens W5455] Length = 182 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 75/176 (42%), Positives = 115/176 (65%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 N+ ++M + L + +RTGR P +++ VKV+ YGS P+ Q+AN+TV E RML++ Sbjct: 5 NLDEKMAKVLEHLDSEFQGIRTGRAHPGLVEGVKVDYYGSLTPIKQLANITVPEARMLII 64 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 + +DK V +E+ I +N+GL P V+G +R+ VPE T ERR VK+A AE++KI+ Sbjct: 65 APFDKGAVKLIEKAILAANIGLTPNVDGSNIRLVVPELTGERRKEFVKMASKAAEEAKIA 124 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +RNIRRD D KK K+ + +ED + + +D QKITD I +D F++K+KEI+ Sbjct: 125 LRNIRRDANDAYKKQEKASEITEDDLKKMLDDAQKITDKFIARVDDEFKKKEKEIL 180 >gi|34580849|ref|ZP_00142329.1| ribosome recycling factor [Rickettsia sibirica 246] gi|28262234|gb|EAA25738.1| ribosome recycling factor [Rickettsia sibirica 246] Length = 186 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 86/179 (48%), Positives = 123/179 (68%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N++++M + L ++ LRTGR S ++LD V VEAYGS +PL+QVA+++ + R + Sbjct: 8 KNLQEKMEKALKVLDHELKGLRTGRASVNLLDSVTVEAYGSKMPLSQVASLSTPDARTIN 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V VWDK MV+SVE+GI +NLGL P +GQ++R+P+P TEERR LVK+AH Y E +KI Sbjct: 68 VQVWDKSMVSSVEKGITIANLGLTPATDGQLIRLPIPALTEERRTELVKLAHKYGEDTKI 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RNIRRDG + LKK K ++D SL +QK+TD +DS ++KK+EIM Sbjct: 128 SLRNIRRDGNEALKKLEKDNVIAKDEHHSLSEQVQKLTDDYSSKVDSVIKQKKQEIMTV 186 >gi|327441021|dbj|BAK17386.1| ribosome recycling factor [Solibacillus silvestris StLB046] Length = 185 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 64/163 (39%), Positives = 109/163 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M +I+ +++ ++R G + S+LD + V+ YGS P+NQ+A ++V E R+L Sbjct: 6 LNQAQEKMTKSINAFSRELASIRAGVANASLLDRITVDYYGSPTPINQMAGISVPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +DK ++ +E+ I S++G+ P +G V+R+ VP TEERR LVK +E++K Sbjct: 66 VIQPYDKSILGEIEKAIMRSDIGITPTNDGNVIRLAVPALTEERRKELVKQVKKESEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTI 169 ++VRN+RRD D LKK K+G+ +ED + +DIQK+TD++I Sbjct: 126 VAVRNVRRDANDDLKKLEKNGEITEDELRGFNDDIQKLTDNSI 168 >gi|157164672|ref|YP_001467726.1| ribosome recycling factor [Campylobacter concisus 13826] gi|166230771|sp|A7ZG18|RRF_CAMC1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|112800347|gb|EAT97691.1| ribosome recycling factor [Campylobacter concisus 13826] Length = 185 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 68/186 (36%), Positives = 113/186 (60%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ D Q K+ I+ LK+D TLRTG+V+ ++LD V V+ YGS PLNQVA V Sbjct: 2 LNKIYDTQ--KEGCEKAIASLKRDFTTLRTGKVNINILDNVMVDYYGSPTPLNQVATVLT 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + + ++ W+K M+ ++ I +N+G+NP +G+ +++ P T E+R K A A Sbjct: 60 SDASTIAITPWEKSMIKAISSAIQAANIGVNPNSDGESVKLFFPPMTVEQRQENAKHAKA 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 EK+K+S+RN+R+D D +KK K +ED ++++QKITD+ ID+ +EK+ Sbjct: 120 MGEKAKVSIRNVRKDANDEVKKLEKDKAITEDESKKGQDEVQKITDTYTAKIDTLVKEKE 179 Query: 181 KEIMHF 186 E++ Sbjct: 180 AELLKI 185 >gi|310823274|ref|YP_003955632.1| ribosome-recycling factor [Stigmatella aurantiaca DW4/3-1] gi|309396346|gb|ADO73805.1| Ribosome-recycling factor [Stigmatella aurantiaca DW4/3-1] Length = 186 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 67/180 (37%), Positives = 113/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ +K R+ T+ LK+++ +RTGR S ++LD V+V+ YG+ PL VA+V EPR++ Sbjct: 7 LKELKGRIDKTLDDLKRELAKVRTGRASTAILDGVRVDYYGTPTPLAGVASVNAPEPRLI 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + +DK + +E+ + E+NLG+NP+ +G+++R+P P TEERR + K + E+ K Sbjct: 67 TIKPFDKSSLKEIEKALREANLGINPMNDGEMIRLPFPPLTEERRKDIAKQVKSKGEEHK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD + LK+ K+ +ED +QK TD+ + +DS K+KE+M Sbjct: 127 VAIRNIRRDANEALKEKLKAKTITEDDNKRTSEKVQKETDAGVAQVDSIIAAKEKEVMSV 186 >gi|124005436|ref|ZP_01690277.1| ribosome recycling factor [Microscilla marina ATCC 23134] gi|123989258|gb|EAY28836.1| ribosome recycling factor [Microscilla marina ATCC 23134] Length = 187 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 71/188 (37%), Positives = 113/188 (60%), Gaps = 3/188 (1%) Query: 1 MNQVID--LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 M + I L K+ M + ++ +R G+ P+MLD ++V+ YG+ PLNQVA+V Sbjct: 1 MEEEIQMYLAEAKELMDKAVQHTNHELNKIRAGKAMPNMLDSIQVDYYGAPTPLNQVASV 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 T + R L++ ++K ++A +E+ I +S+LGLNP +G+ +RI +P TEERR LVK Sbjct: 61 TAPDARTLMIRPFEKSVIAGIEKAIRDSDLGLNPQNDGENIRINIPALTEERRKQLVKQV 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 E K+S+RN+R+D + LK +K G ASED V E +QK+T+ +D +E+ Sbjct: 121 KQEIESGKVSIRNVRKDTNNSLKDLQKEG-ASEDEVKRAEESVQKLTNDFTNKVDDLYEK 179 Query: 179 KKKEIMHF 186 K+ E+M Sbjct: 180 KETELMTV 187 >gi|89255661|ref|YP_513022.1| ribosome recycling factor [Francisella tularensis subsp. holarctica LVS] gi|115314162|ref|YP_762885.1| ribosome recycling factor [Francisella tularensis subsp. holarctica OSU18] gi|118496843|ref|YP_897893.1| ribosome recycling factor [Francisella tularensis subsp. novicida U112] gi|134302594|ref|YP_001122565.1| ribosome recycling factor [Francisella tularensis subsp. tularensis WY96-3418] gi|156501611|ref|YP_001427676.1| ribosome recycling factor [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009898|ref|ZP_02274829.1| ribosome recycling factor [Francisella tularensis subsp. holarctica FSC200] gi|187932152|ref|YP_001892137.1| ribosome recycling factor [Francisella tularensis subsp. mediasiatica FSC147] gi|194324473|ref|ZP_03058245.1| ribosome recycling factor [Francisella tularensis subsp. novicida FTE] gi|254367052|ref|ZP_04983088.1| ribosome recycling factor [Francisella tularensis subsp. holarctica 257] gi|254368532|ref|ZP_04984548.1| ribosome recycling factor [Francisella tularensis subsp. holarctica FSC022] gi|254372207|ref|ZP_04987699.1| ribosome recycling factor [Francisella tularensis subsp. novicida GA99-3549] gi|254373690|ref|ZP_04989174.1| hypothetical protein FTDG_01699 [Francisella novicida GA99-3548] gi|290953220|ref|ZP_06557841.1| ribosome recycling factor [Francisella tularensis subsp. holarctica URFT1] gi|295313588|ref|ZP_06804177.1| ribosome recycling factor [Francisella tularensis subsp. holarctica URFT1] gi|122325794|sp|Q0BNT6|RRF_FRATO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|122501262|sp|Q2A5H9|RRF_FRATH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166230786|sp|A7N9R7|RRF_FRATF RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166230787|sp|A0Q4H4|RRF_FRATN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|166230788|sp|A4IZU3|RRF_FRATW RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238691516|sp|B2SDZ4|RRF_FRATM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|89143492|emb|CAJ78668.1| ribosome recycling factor [Francisella tularensis subsp. holarctica LVS] gi|115129061|gb|ABI82248.1| protein-synthesizing GTPase [Francisella tularensis subsp. holarctica OSU18] gi|118422749|gb|ABK89139.1| ribosome recycling factor [Francisella novicida U112] gi|134050371|gb|ABO47442.1| ribosome recycling factor [Francisella tularensis subsp. tularensis WY96-3418] gi|134252878|gb|EBA51972.1| ribosome recycling factor [Francisella tularensis subsp. holarctica 257] gi|151569937|gb|EDN35591.1| ribosome recycling factor [Francisella novicida GA99-3549] gi|151571412|gb|EDN37066.1| hypothetical protein FTDG_01699 [Francisella novicida GA99-3548] gi|156252214|gb|ABU60720.1| ribosome recycling factor [Francisella tularensis subsp. holarctica FTNF002-00] gi|157121435|gb|EDO65626.1| ribosome recycling factor [Francisella tularensis subsp. holarctica FSC022] gi|187713061|gb|ACD31358.1| ribosome recycling factor [Francisella tularensis subsp. mediasiatica FSC147] gi|194321308|gb|EDX18794.1| ribosome recycling factor [Francisella tularensis subsp. novicida FTE] gi|328676312|gb|AEB27182.1| Ribosome recycling factor [Francisella cf. novicida Fx1] Length = 185 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 69/180 (38%), Positives = 109/180 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ ++RM ++ L D+ +RTGR P +L V ++ YG P+ Q AN+TVL+ R L Sbjct: 6 LKDAENRMKKSLEVLADDLAKIRTGRAHPDLLAHVTIDYYGVETPITQAANITVLDARTL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ W+K + + +E+ I S+LGLNP G LR+P+P EERR LVK+ + E + Sbjct: 66 GITPWEKGLSSKIEKAILTSDLGLNPTNLGDSLRVPMPALNEERRKELVKLVKSETEAGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+RNIRRD +K+ K + +ED E+DIQKITD I D+ +K++++M Sbjct: 126 VSIRNIRRDANGDIKELLKEKEITEDQAKKAEDDIQKITDKMIAQADALAAKKEQDLMAV 185 >gi|261337802|ref|ZP_05965686.1| ribosome recycling factor [Bifidobacterium gallicum DSM 20093] gi|270277256|gb|EFA23110.1| ribosome recycling factor [Bifidobacterium gallicum DSM 20093] Length = 184 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 66/180 (36%), Positives = 106/180 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + KD+M T+ K++ +RTGR +P++L+ + V+ YG+ PL VA + V EPR L Sbjct: 5 VDQAKDQMAKTVESTKENFSGIRTGRANPALLNGIVVDYYGAPTPLKAVATIGVPEPRTL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D +VE+ + +S+LG +P +G V+R+ +PE T ERR VK+A AE K Sbjct: 65 SITPFDASQTNAVEKALRDSDLGASPRRDGNVIRLTMPELTGERRKEYVKLAKTKAEDGK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRR + + K+ K G+ ED L ++ K+T +D+ E K+KEIM Sbjct: 125 VAVRNIRRKAKEAIDKAVKDGEMGEDEGDRLLKELDKLTKQVTDELDTLLEAKQKEIMEV 184 >gi|295396357|ref|ZP_06806523.1| ribosome recycling factor [Brevibacterium mcbrellneri ATCC 49030] gi|294970797|gb|EFG46706.1| ribosome recycling factor [Brevibacterium mcbrellneri ATCC 49030] Length = 185 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 60/180 (33%), Positives = 102/180 (56%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ +M I + +RTGR +P + + VE YG+ P+ Q+A+ V E R + Sbjct: 6 LKEASAKMDGAIEATQSAFGNVRTGRANPGLFANIPVEYYGTPTPMQQLASFQVPEARTI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +D+ + +E + S++G NP +G V+R+ +PE TEERR VK+ AE+ + Sbjct: 66 LITPYDRGALTDIENALRNSDIGANPANDGNVIRVTLPELTEERRKEYVKIVKGDAEEGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ISVRN+RR + L++ +K G+A ED V ++ +IT + IDS K+KE++ Sbjct: 126 ISVRNVRRKAKEQLERIQKDGEAGEDEVKHALGELDEITKKKVDEIDSLLAAKEKELLEV 185 >gi|319939517|ref|ZP_08013877.1| ribosome-recycling factor [Streptococcus anginosus 1_2_62CV] gi|319811503|gb|EFW07798.1| ribosome-recycling factor [Streptococcus anginosus 1_2_62CV] Length = 185 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 72/180 (40%), Positives = 115/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+RM + L ++ ++R GR + S+LD + VE YG PLNQ+A++T+ E R+L Sbjct: 6 VEKAKERMTQSHQSLAREFGSIRAGRANASLLDRISVEYYGVETPLNQIASITIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + +ER ++ S+LG+ P +G V+R+ +P TEE R L K E +K Sbjct: 66 LVTPFDKSSIKDIERALNASDLGITPASDGTVIRLVIPALTEETRRDLAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIRRD MD KK K+ + +ED + +LE DIQK+TD +K+ID K+KE++ Sbjct: 126 IAIRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDEAVKHIDDMTASKEKELIEV 185 >gi|116792122|gb|ABK26242.1| unknown [Picea sitchensis] Length = 173 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 77/173 (44%), Positives = 112/173 (64%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M T+ +K + ++RTGR SP+ LD V+VE YGS V L +A V+V + L+V +DK Sbjct: 1 MEKTLETIKTNFNSIRTGRASPAFLDRVEVEYYGSPVNLKSLAQVSVPDGGTLLVQPYDK 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 + S+E+ I +SNLGL P +G V+R+ +P+ T ERR L+KV AE+ KI++RNIR Sbjct: 61 SSLKSIEKAISKSNLGLTPSNDGNVIRLSIPQLTSERRKELLKVVAKIAEEGKIAIRNIR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RD + +K K K SED V L D+QK+TD IK +DS +++K+KE+M Sbjct: 121 RDAIKAYEKLEKEKKLSEDNVKDLSGDLQKVTDEFIKKVDSLYKQKEKELMTV 173 >gi|325207224|gb|ADZ02676.1| ribosome recycling factor [Neisseria meningitidis NZ-05/33] Length = 185 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 73/179 (40%), Positives = 112/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + + +M ++ LK+++ +RTGR +LD V+VE +GS VP++QVANVT+L+ + Sbjct: 7 KTAEGKMQRSVEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVANVTLLDACTIG 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V ++ M A VE+ I +SNLGLNP G ++R+P+P TEERR L+KV AE+ ++ Sbjct: 67 VKPFEGNMAAKVEKAIRDSNLGLNPAAVGDLIRVPMPMLTEERRKDLIKVVRGEAEEGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RN+RRD DH+KK K + SED E +QK+TD I D K++++M Sbjct: 127 SIRNVRRDANDHIKKLLKDKEISEDEARRGEEAVQKLTDKYITEADKLLTAKEEDLMAI 185 >gi|239948540|ref|ZP_04700293.1| ribosome recycling factor [Rickettsia endosymbiont of Ixodes scapularis] gi|239922816|gb|EER22840.1| ribosome recycling factor [Rickettsia endosymbiont of Ixodes scapularis] Length = 202 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 85/179 (47%), Positives = 123/179 (68%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N++++M + L ++ LRTGR S ++LD V VEAYGS +PL+QVA+++ + R + Sbjct: 24 KNLQEKMEKALKVLDHELKGLRTGRASVNLLDSVTVEAYGSKMPLSQVASLSTPDARTIN 83 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V VWDK MV+SVE+GI +NLGL P +GQ++R+P+P TEERR LVK+AH Y E +KI Sbjct: 84 VQVWDKSMVSSVEKGITIANLGLTPATDGQLIRLPIPALTEERRKELVKLAHKYGEDTKI 143 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RNIRRDG + LKK K ++D SL +QK+TD +DS ++K++EIM Sbjct: 144 SLRNIRRDGNEELKKLEKDNVIAKDEHHSLSEQVQKLTDDYSSKVDSVIKQKEQEIMTV 202 >gi|257867709|ref|ZP_05647362.1| ribosome recycling factor [Enterococcus casseliflavus EC30] gi|257874036|ref|ZP_05653689.1| ribosome recycling factor [Enterococcus casseliflavus EC10] gi|257876615|ref|ZP_05656268.1| ribosome recycling factor [Enterococcus casseliflavus EC20] gi|325571087|ref|ZP_08146659.1| ribosome recycling factor [Enterococcus casseliflavus ATCC 12755] gi|257801792|gb|EEV30695.1| ribosome recycling factor [Enterococcus casseliflavus EC30] gi|257808200|gb|EEV37022.1| ribosome recycling factor [Enterococcus casseliflavus EC10] gi|257810781|gb|EEV39601.1| ribosome recycling factor [Enterococcus casseliflavus EC20] gi|325156172|gb|EGC68358.1| ribosome recycling factor [Enterococcus casseliflavus ATCC 12755] Length = 185 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 116/180 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L KD+M L++++ +R GR + S+LD V V YG PLNQ+A++T+ E R+L Sbjct: 6 LTEAKDKMKKAAENLQRELGQIRAGRANASILDRVMVTYYGVPTPLNQMASITIPEARIL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK M+ VE+ I +S++G+ P +G V+R+ +P+ TEERR L K AE +K Sbjct: 66 MITPFDKTMIQEVEKAIMQSDIGITPANDGTVIRLVIPQLTEERRKELAKDVKKEAENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I+VRNIRRD M+ KK K+G +ED + E ++Q TD++IK ID+ EK++E++ Sbjct: 126 IAVRNIRRDAMEAYKKQEKAGDITEDDLRESEKEVQTATDNSIKEIDAIAAEKEQELLEV 185 >gi|255320443|ref|ZP_05361624.1| ribosome recycling factor [Acinetobacter radioresistens SK82] gi|262378339|ref|ZP_06071496.1| ribosome recycling factor [Acinetobacter radioresistens SH164] gi|255302415|gb|EET81651.1| ribosome recycling factor [Acinetobacter radioresistens SK82] gi|262299624|gb|EEY87536.1| ribosome recycling factor [Acinetobacter radioresistens SH164] Length = 184 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 110/179 (61%), Gaps = 1/179 (0%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM ++ L++ +RTGR PS+L+ V V YGS VPLNQVANV V + R LV Sbjct: 7 KDSEQRMQKSLESLEQGFAKVRTGRAHPSILNGVMVPYYGSDVPLNQVANVGVEDSRTLV 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +++ MV+++++ I ES+LGLNPI +R+P+P TEE R + KVA AE +K+ Sbjct: 67 VQPFERTMVSAIDKAIRESDLGLNPITA-DAIRVPMPALTEETRRDMQKVARTEAENAKV 125 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD + +K K + SED +IQKITD + +D K+ E+M Sbjct: 126 AIRNIRRDVLGDIKALLKEKEISEDDERRAGEEIQKITDKYVAEVDKRLAAKEAELMKV 184 >gi|313886710|ref|ZP_07820420.1| ribosome recycling factor [Porphyromonas asaccharolytica PR426713P-I] gi|332300074|ref|YP_004441995.1| Ribosome-recycling factor [Porphyromonas asaccharolytica DSM 20707] gi|312923872|gb|EFR34671.1| ribosome recycling factor [Porphyromonas asaccharolytica PR426713P-I] gi|332177137|gb|AEE12827.1| Ribosome-recycling factor [Porphyromonas asaccharolytica DSM 20707] Length = 186 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + + M + FL+ + +R G+ +P +LD + VEAYG+ +PLNQVA VTV + R L Sbjct: 8 KPAEQSMLKAVEFLQDKLDRIRAGKANPVLLDDITVEAYGAPMPLNQVATVTVPDARTLA 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++ WDK+++ +E+GI +SNLG+ P G+++RI +P TEERR LVK A +E++KI Sbjct: 68 ITPWDKKLIKDIEKGILDSNLGITPTNNGEMIRIAMPPLTEERRKELVKQCKAESEEAKI 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RN RRD +D KK+ K+ ED + END QK+ D I ++ K+KEIM Sbjct: 128 SIRNARRDAIDAAKKAVKAEDLPEDTIKQTENDAQKLHDKYIGRVEEALAAKEKEIMTI 186 >gi|71066089|ref|YP_264816.1| ribosome recycling factor [Psychrobacter arcticus 273-4] gi|123648272|sp|Q4FRH6|RRF_PSYA2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|71039074|gb|AAZ19382.1| ribosome recycling factor [Psychrobacter arcticus 273-4] Length = 184 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 77/179 (43%), Positives = 112/179 (62%), Gaps = 1/179 (0%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ + RM T+ L+ +RTGR P ML V V YGS PLNQVA+V V + R L+ Sbjct: 7 QDGEARMQKTLEALESTFSKVRTGRAHPGMLSGVMVSYYGSDTPLNQVASVNVEDSRTLL 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +D+ MV ++++ I E++LGLNP+ V+R+P+P TEE R + K+A AE S++ Sbjct: 67 VQPFDRTMVQAIDKAIREADLGLNPMTA-DVIRVPMPALTEETRRDMQKLARGEAENSRV 125 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RNIRRD M+ +K+ K + SED +DIQKITD I+ IDS +K+ ++M Sbjct: 126 SIRNIRRDMMNDIKELAKEKEISEDDEHRASDDIQKITDKYIETIDSRLSKKESDLMSV 184 >gi|227529099|ref|ZP_03959148.1| ribosome recycling factor [Lactobacillus vaginalis ATCC 49540] gi|227350943|gb|EEJ41234.1| ribosome recycling factor [Lactobacillus vaginalis ATCC 49540] Length = 186 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 75/178 (42%), Positives = 118/178 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L KD+M + L++ + +R GR + S+L+ VKV+ YG+ PLNQVA++T+ E R L Sbjct: 8 LDEAKDKMAKSGDALRRTLADIRAGRANASLLNGVKVDYYGAPTPLNQVASITIPEARQL 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +D+ + ++E+ I+ +NLGL P +G +RI +P+ TEERR LVK A EK+K Sbjct: 68 LVTPYDESSLDNIEKAIYAANLGLTPQNDGSAIRILIPQLTEERRKELVKDVKAELEKAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++VRN+RR+ MD LKK K G ++D LE +Q TD+ IKN+++ +K+KE+M Sbjct: 128 VAVRNVRREAMDDLKKGNKDGDFNDDEFHELEKKVQTETDNGIKNLENIAADKEKELM 185 >gi|313885301|ref|ZP_07819052.1| ribosome recycling factor [Eremococcus coleocola ACS-139-V-Col8] gi|312619407|gb|EFR30845.1| ribosome recycling factor [Eremococcus coleocola ACS-139-V-Col8] Length = 185 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 76/185 (41%), Positives = 117/185 (63%), Gaps = 1/185 (0%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M I L+ KDRM ++ +++ ++R G + S+LD ++V YG PLNQ+A++TV Sbjct: 1 MADTI-LKETKDRMAKSVEAFSRELASIRAGVANASILDRIQVTYYGVPTPLNQLASITV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E RML+V+ +DK +E+ I +S++G+NP +G V+R+ +P T+ERR LVKV Sbjct: 60 PEARMLLVTPYDKSSTTEIEKAILQSDVGINPTSDGDVIRLVIPALTKERREELVKVVGK 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E +KIS+RNIRRD +D KK K+ + +ED V E IQ ITD +K +D+ + K+ Sbjct: 120 ENETAKISIRNIRRDQIDAAKKLEKNNELTEDDVKDYEKQIQAITDEKVKELDALAKAKE 179 Query: 181 KEIMH 185 EIM+ Sbjct: 180 DEIMN 184 >gi|282882018|ref|ZP_06290659.1| ribosome recycling factor [Peptoniphilus lacrimalis 315-B] gi|300813724|ref|ZP_07094044.1| ribosome recycling factor [Peptoniphilus sp. oral taxon 836 str. F0141] gi|281298048|gb|EFA90503.1| ribosome recycling factor [Peptoniphilus lacrimalis 315-B] gi|300512181|gb|EFK39361.1| ribosome recycling factor [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 185 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 76/170 (44%), Positives = 116/170 (68%) Query: 17 TISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMV 76 TIS LK+D ++R GR + S+LD + V+ YG P+NQVA ++ EPRML++S WD +++ Sbjct: 16 TISSLKEDFQSIRAGRANTSLLDKITVDYYGQQSPINQVAGLSAPEPRMLMISPWDPKLI 75 Query: 77 ASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDG 136 +E+ I +S+LG+ P +G+V+R+ +P+ TEERR L KV +E +KI++RNIRRD Sbjct: 76 PEIEKSILKSDLGITPSNDGKVIRLIIPQLTEERRKDLTKVVGKNSEAAKIAIRNIRRDA 135 Query: 137 MDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 MD +KK+ KS + +ED S E +IQK+TD I+ ID + K+ E+M Sbjct: 136 MDEIKKAEKSKEITEDDRKSNEEEIQKLTDKYIEEIDKITKAKEIELMEI 185 >gi|157964221|ref|YP_001499045.1| ribosome recycling factor [Rickettsia massiliae MTU5] gi|157843997|gb|ABV84498.1| Ribosome recycling factor [Rickettsia massiliae MTU5] Length = 188 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 85/179 (47%), Positives = 122/179 (68%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N++ +M + L ++ LRTGR S ++LD V VEAYGS +PL+QVA+++ + R + Sbjct: 10 KNLQGKMEKALKVLDHELKGLRTGRASINLLDSVTVEAYGSKMPLSQVASLSTPDARTIN 69 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V VWDK MV+SVE+GI +NLGL P +GQ++R+P+P TEERR LVK+AH Y E +KI Sbjct: 70 VQVWDKSMVSSVEKGITIANLGLTPATDGQLIRLPIPTLTEERRQELVKLAHKYGEDTKI 129 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RNIRRDG + LKK K ++D SL +QK+TD +DS ++K++EIM Sbjct: 130 SLRNIRRDGNEELKKLEKDNVIAKDEHHSLSEQVQKLTDDYSSKVDSVIKQKEQEIMTV 188 >gi|212715798|ref|ZP_03323926.1| hypothetical protein BIFCAT_00699 [Bifidobacterium catenulatum DSM 16992] gi|212661165|gb|EEB21740.1| hypothetical protein BIFCAT_00699 [Bifidobacterium catenulatum DSM 16992] Length = 184 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 68/180 (37%), Positives = 108/180 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K +M ++ K++ +RTGR +P++L+ + V+ YG+ PL VA + V EPR L Sbjct: 5 VEQAKAQMAKSVESTKENFSGIRTGRANPALLNGITVDYYGAPTPLKAVATIGVPEPRTL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +D +VE+ + +S+LG +P +G V+R+ +PE TEERR VK+A AE K Sbjct: 65 SVTPFDASQANAVEKALRDSDLGASPRRDGNVIRLTMPELTEERRKEYVKLAKGKAEDGK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRR + L K+ K G+ ED L ++ K+T T +D+ E K+KEIM Sbjct: 125 VAVRNIRRKAKESLDKAIKDGEMGEDDGDRLLKELDKVTKQTTDELDTLLEAKQKEIMEV 184 >gi|238751448|ref|ZP_04612940.1| Ribosome-recycling factor [Yersinia rohdei ATCC 43380] gi|238710315|gb|EEQ02541.1| Ribosome-recycling factor [Yersinia rohdei ATCC 43380] Length = 185 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 73/166 (43%), Positives = 107/166 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM + +RTGR SPS+LD ++VE YG+ PL Q+AN+ V + R L Sbjct: 7 KDTEVRMEKCFEAFLTHISKIRTGRASPSILDGIQVEYYGTATPLRQLANIVVEDSRTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+D+ + A+VE+ I S+LGLNP G V+R+P+P TEERR L+KV A AE+ ++ Sbjct: 67 LTVFDRSLSAAVEKAIMTSDLGLNPSSAGTVIRVPLPALTEERRKDLIKVVRAEAEQGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNID 173 SVRN+RRD + LK K + SED ++DIQK+TD IK +D Sbjct: 127 SVRNVRRDANEKLKALLKDKEISEDEDRRSQDDIQKLTDIFIKKVD 172 >gi|153864070|ref|ZP_01997081.1| Ribosome recycling factor [Beggiatoa sp. SS] gi|152146433|gb|EDN72917.1| Ribosome recycling factor [Beggiatoa sp. SS] Length = 188 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 72/186 (38%), Positives = 122/186 (65%), Gaps = 1/186 (0%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M++++ ++ ++RM ++ LK D++ +R+GR S+L+ + V YG+ P+NQ+AN++V Sbjct: 4 MSEMLQ-KDAEERMDKSVKALKDDLIKIRSGRAHTSLLEHITVPYYGTDTPINQIANISV 62 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 ++PR L V+ ++K +++ VE+ I +S+LGLNP G +LR+P+P TEERR LVKV Sbjct: 63 IDPRTLGVAPYEKNILSIVEKAIRDSDLGLNPTNVGNLLRVPLPPMTEERRRDLVKVVRH 122 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AEK+++++RNIRRD LK+ S+D E IQK+T+ I +DS +EK+ Sbjct: 123 DAEKARVAIRNIRRDANHDLKELMNDKDISKDEEHHGEEMIQKLTNKLIAQVDSVLQEKE 182 Query: 181 KEIMHF 186 ++M Sbjct: 183 AKLMEV 188 >gi|217077680|ref|YP_002335398.1| ribosome recycling factor [Thermosipho africanus TCF52B] gi|226703270|sp|B7IDI0|RRF_THEAB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|217037535|gb|ACJ76057.1| frr ribosome recycling factor [Thermosipho africanus TCF52B] Length = 185 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 74/180 (41%), Positives = 115/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ + RM ++ + +++ LRTGR SP++L+ +K++ YG P+NQVA + V E R L Sbjct: 6 LKEAELRMKKSVEAIDEELKKLRTGRPSPALLEEIKIDYYGVPTPINQVATINVTEERSL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ W+K +++++E+ I S+LGLNP +G V+R+ P T E+R VK E K Sbjct: 66 IIKPWEKNLLSAIEKAIQASDLGLNPTNDGNVVRLVFPSPTTEQRQKWVKKTKEIVEHGK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I+VRNIRRD + LK+ K+G+ SED LE ++Q +TD I+ +D FE K+KEIM F Sbjct: 126 IAVRNIRRDVIKELKEMTKNGEISEDDEKRLEKEVQNLTDKYIEELDKLFERKEKEIMEF 185 >gi|320535432|ref|ZP_08035541.1| ribosome recycling factor [Treponema phagedenis F0421] gi|320147719|gb|EFW39226.1| ribosome recycling factor [Treponema phagedenis F0421] Length = 184 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 79/184 (42%), Positives = 123/184 (66%), Gaps = 2/184 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 MN + + +++M +I+ LK D TLRTGR S S+ + ++VE YG PLNQVA++++ Sbjct: 1 MNDIH--TSYEEKMKKSIAALKDDFNTLRTGRASASLFEKIRVECYGELSPLNQVASISI 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R++V+ WDK ++ ++E+ I +S L LNP +G+++RI +P TE+RR L K A Sbjct: 59 PEARLVVIQPWDKSLLPNIEKAILKSELSLNPSNDGKIIRIAIPPLTEDRRKELAKQAKN 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE+S+I++RNIRRDG++ KK +K G SED + + E QK TD+ I I++ EK+ Sbjct: 119 IAEQSRIAIRNIRRDGIEEAKKLQKEGSLSEDDLKTAEEKFQKATDAHISEINTILAEKE 178 Query: 181 KEIM 184 KEI+ Sbjct: 179 KEIL 182 >gi|225352148|ref|ZP_03743171.1| hypothetical protein BIFPSEUDO_03763 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157395|gb|EEG70734.1| hypothetical protein BIFPSEUDO_03763 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 184 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 69/180 (38%), Positives = 108/180 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K +M ++ K++ +RTGR +P++L+ + V+ YG+ PL VA + V EPR L Sbjct: 5 VEQAKAQMAKSVESTKENFSGIRTGRANPALLNGITVDYYGAPTPLKAVATIGVPEPRTL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +D +VE+ + +S+LG +P +G V+R+ +PE TEERR VK+A AE K Sbjct: 65 SVTPFDASQANAVEKALRDSDLGASPRRDGNVIRLTMPELTEERRKEYVKLAKGKAEDGK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRR + L K+ K G+ ED L ++ KIT T +D+ E K+KEIM Sbjct: 125 VAVRNIRRKAKESLDKAIKDGEMGEDEGDRLLKELDKITKQTTDELDTLLEAKQKEIMEV 184 >gi|150024539|ref|YP_001295365.1| ribosome recycling factor [Flavobacterium psychrophilum JIP02/86] gi|190360243|sp|A6GWS4|RRF_FLAPJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|149771080|emb|CAL42547.1| Ribosome recycling factor [Flavobacterium psychrophilum JIP02/86] Length = 187 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 76/188 (40%), Positives = 112/188 (59%), Gaps = 3/188 (1%) Query: 1 MNQVID--LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 M + ID L + K+ M +I+ L+K+ + +R G+ SP+ML V V+ YGS PL+QVA + Sbjct: 1 MTEEIDFILDSTKESMEGSIAHLEKEFLNIRAGKASPAMLGSVFVDYYGSATPLSQVAKI 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 +V + R + + ++K M+ +E+ I +N+G NP+ G V+ I VP TEERR L K A Sbjct: 61 SVPDARTITLQPFEKNMLQVIEKAIMIANIGFNPMNNGDVIIISVPPLTEERRRELAKQA 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 AE +KI VRN+R+D +KK K G SED E +QK+TDS I+ +D Sbjct: 121 KTEAEDAKIGVRNVRKDSNSDIKKLEKEG-TSEDACKIAEESVQKLTDSFIRKVDELLVV 179 Query: 179 KKKEIMHF 186 K+ EIM Sbjct: 180 KEAEIMKV 187 >gi|42527846|ref|NP_972944.1| ribosome recycling factor [Treponema denticola ATCC 35405] gi|47116998|sp|P61310|RRF_TREDE RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|41818674|gb|AAS12863.1| ribosome recycling factor [Treponema denticola ATCC 35405] Length = 185 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 77/178 (43%), Positives = 119/178 (66%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N +++M T+ LK++ LRTGR S ++ D ++V YG PLNQ+AN+++ E R++V Sbjct: 7 KNCEEKMKKTVVALKEEFNMLRTGRASSALFDKIRVNCYGESTPLNQLANISIPEARLVV 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + WDK ++ +E+ + +++L +NP +G+V+RI +P TE+RR L K A AE S++ Sbjct: 67 IQPWDKGLLVEIEKAVLQADLSVNPTNDGKVIRIAIPPLTEDRRKDLAKKAKTIAENSRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 SVRNIRRDG+D KK +K GK SED + + E+ QK TD+ I I+ E K+KEIM Sbjct: 127 SVRNIRRDGIDEAKKLQKDGKISEDQLKTAEDAFQKSTDAYIAEINKVLEAKEKEIME 184 >gi|300812543|ref|ZP_07092960.1| ribosome recycling factor [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496416|gb|EFK31521.1| ribosome recycling factor [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 185 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 70/177 (39%), Positives = 109/177 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + K M +I + ++ T+R G + S+LD V VE YG PL Q+A +T+ EPR+L Sbjct: 6 IAKAKSNMNKSIEVYQSNLATVRAGVANASLLDRVMVEYYGVPTPLVQLAGITIPEPRVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK + +E I S+LGL P +G V+R+ +P+ T ERR + K AE++K Sbjct: 66 MITPYDKTSLNDIEHAILASDLGLTPANDGNVIRLVIPQLTGERRQEIAKEVGKLAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 I+VRN+R++ M LKK K G+ +ED LE ++QK+TD + K ID + K+KEI Sbjct: 126 IAVRNVRQEAMKALKKQEKDGEITEDEERRLEKEVQKVTDESTKKIDQMADNKRKEI 182 >gi|227514718|ref|ZP_03944767.1| ribosome recycling factor [Lactobacillus fermentum ATCC 14931] gi|227086922|gb|EEI22234.1| ribosome recycling factor [Lactobacillus fermentum ATCC 14931] Length = 186 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 118/179 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K++M + LK+ + +R GR + S+L+ V VE YG+ PLNQ+A++T+ E R L Sbjct: 7 LAEAKEKMAKSGDALKRTLADIRAGRANASLLNTVTVEYYGAPTPLNQLASITIPEARQL 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +DK + +ER I+ESNLGL P +G+ +R+ VP+ TE+RR LVK A EK+K Sbjct: 67 LISPYDKTTLKDIERAIYESNLGLTPQNDGETIRLVVPQLTEDRRKELVKDVKAEMEKAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRN+RR+ MD LKK K G ++D LE +Q+ TD+ IKN++ +K+KE++ Sbjct: 127 VAVRNVRREAMDDLKKGNKDGDFNDDEFHDLEKKVQEETDAGIKNLEQIAADKEKELLE 185 >gi|153812431|ref|ZP_01965099.1| hypothetical protein RUMOBE_02830 [Ruminococcus obeum ATCC 29174] gi|149831593|gb|EDM86680.1| hypothetical protein RUMOBE_02830 [Ruminococcus obeum ATCC 29174] Length = 183 Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats. Identities = 78/180 (43%), Positives = 113/180 (62%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q + +M T+ + ++ T+R GR +P +LD + V+ YGS PL QVAN+TV E RM+ Sbjct: 5 VQKYEQKMTKTLDGFEAELTTIRAGRANPHILDKITVDYYGSPTPLQQVANITVPEARMI 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + W+ ++ +E+ I S+LGLNP +G+++R+ +PE TEERR LVK E +K Sbjct: 65 QIQPWESSLIKGIEKAILTSDLGLNPSNDGKIVRLVLPELTEERRKDLVKDVKKKGEAAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD D KK K SED V LE+ +QK+TD IK ID+ E K KEI+ Sbjct: 125 VAVRNIRRDANDAFKKLTKQ-DVSEDEVKDLEDAVQKLTDKFIKKIDAAVEVKSKEILTV 183 >gi|262372666|ref|ZP_06065945.1| ribosome recycling factor [Acinetobacter junii SH205] gi|262312691|gb|EEY93776.1| ribosome recycling factor [Acinetobacter junii SH205] Length = 184 Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 110/179 (61%), Gaps = 1/179 (0%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM T+ L++ +RTGR PS+L+ V V YGS VPLNQVANV V + R L+ Sbjct: 7 KDSEQRMQKTLDSLEQGFAKVRTGRAHPSILNGVMVPYYGSDVPLNQVANVGVEDSRTLI 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +++ MV+++++ I ES+LGLNPI +R+P+P TEE R + KVA AE +K+ Sbjct: 67 VQPFERTMVSAIDKAIRESDLGLNPITA-DSIRVPLPALTEETRRDMQKVARNEAENAKV 125 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD + +K K + SED DIQKITD + +D K+ E+M Sbjct: 126 AIRNIRRDVLGDIKALLKEKEISEDDERRAGEDIQKITDKYVAEVDKRLAAKEAELMKV 184 >gi|168335176|ref|ZP_02693282.1| ribosome recycling factor [Epulopiscium sp. 'N.t. morphotype B'] Length = 180 Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats. Identities = 69/180 (38%), Positives = 115/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +D+M +I LK+D T+R GR +P++LD + V+ YG+ P+ QV N+ V E R+L Sbjct: 1 MKKFEDKMEKSILSLKEDFNTIRAGRANPNVLDKIVVDYYGTLTPIKQVGNIVVPEARIL 60 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WD ++ +E+ I+ES++G+NP +G+V+R+ PE T+ERR L K E +K Sbjct: 61 QIQPWDSSLLKGIEKAINESDIGINPSNDGKVIRLVFPELTQERRKELTKEIKKKGENAK 120 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRR+ MD KK +K+ + +ED + EN +QK+TD + ID E+K E++ Sbjct: 121 VAIRNIRREAMDSFKKQQKANEITEDEQTTNENSVQKLTDKFVAEIDKLIEQKSSEVLSV 180 >gi|260551688|ref|ZP_05825762.1| ribosome releasing factor [Acinetobacter sp. RUH2624] gi|260405431|gb|EEW98925.1| ribosome releasing factor [Acinetobacter sp. RUH2624] Length = 184 Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 112/179 (62%), Gaps = 1/179 (0%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM T+ L++ +RTGR PS+L+ V V YGS VPLNQVANV V + R L+ Sbjct: 7 KDSEQRMMKTLESLEQGFAKVRTGRAHPSILNGVMVPYYGSDVPLNQVANVGVEDSRTLI 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +++ MV+++++ I ES+LGLNPI +R+P+P TEE R + KVA + AE +K+ Sbjct: 67 VQPFERTMVSAIDKAIRESDLGLNPITA-DSIRVPLPALTEETRRDMQKVARSEAENAKV 125 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD + +K K + SED +DIQKITD + +D K+ E+M Sbjct: 126 AIRNIRRDVLGDIKALLKEKEISEDDERRAGDDIQKITDKYVAEVDKRLAAKEAELMKV 184 >gi|182417573|ref|ZP_02948898.1| ribosome recycling factor [Clostridium butyricum 5521] gi|237668448|ref|ZP_04528432.1| ribosome recycling factor [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378586|gb|EDT76114.1| ribosome recycling factor [Clostridium butyricum 5521] gi|237656796|gb|EEP54352.1| ribosome recycling factor [Clostridium butyricum E4 str. BoNT E BL5262] Length = 185 Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats. Identities = 78/180 (43%), Positives = 123/180 (68%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++N +++M TIS L+ D+ T++ GR +P+MLD ++VE YGS PL+QVAN++ EPR+L Sbjct: 6 IKNAEEKMKKTISVLESDLSTMKAGRANPTMLDRIQVEYYGSMCPLSQVANISAPEPRVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ W+K M+ +ER I +S+LGLNP +G V+R+ VPE T E R LVK E++K Sbjct: 66 MITPWEKPMLKDIERAILKSDLGLNPSNDGSVIRLVVPELTAETRKTLVKNVKKTGEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VR+IR+ D +K +K G SED + E+D+QK TD+ +K ID+ K+KE++ Sbjct: 126 VAVRSIRKAANDKIKTLKKDGDISEDQIKKGEDDVQKKTDAVVKQIDAIIAAKEKEVLSV 185 >gi|300088119|ref|YP_003758641.1| ribosome recycling factor [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527852|gb|ADJ26320.1| ribosome recycling factor [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 186 Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats. Identities = 66/185 (35%), Positives = 119/185 (64%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 MN +Q + +MG +I L +++ +RTGR S ++++ V+V+ G+ P++ +ANV+V Sbjct: 1 MNANEIMQTAEKKMGISIEVLHRELGAIRTGRASTAIIEHVQVDYAGTPTPIHHLANVSV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 RML++ WD+ M+ +E+ I +S+LGL P +GQV+R+ +P ++ERRL L ++ Sbjct: 61 PNARMLLIQPWDRTMMGPIEKAIMKSDLGLTPSNDGQVIRLSIPPLSQERRLELTRMVAK 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E K+++RN+RR+ +DHLKK K + S+D ++ +QK+TDS I D ++K Sbjct: 121 RVEDDKVAIRNLRREALDHLKKMEKDKELSQDESRRAQDALQKLTDSYIAKADELGKQKD 180 Query: 181 KEIMH 185 +E+++ Sbjct: 181 EELLN 185 >gi|238063326|ref|ZP_04608035.1| ribosome-recycling factor [Micromonospora sp. ATCC 39149] gi|237885137|gb|EEP73965.1| ribosome-recycling factor [Micromonospora sp. ATCC 39149] Length = 185 Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats. Identities = 64/180 (35%), Positives = 106/180 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M I K++ +RTGR + +M V ++ YG+ PL Q+A++ V EPRM+ Sbjct: 6 LLEAEEKMERAIEHAKEEFGAIRTGRANAAMFSKVIIDYYGTPTPLPQMASIGVPEPRMV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D + ++ER I +S+L +NP EG LRI +P+ TEERR ++KVA E++K Sbjct: 66 IIKPYDNSQINAMERAIRDSDLSVNPNNEGNQLRILLPQMTEERRREMIKVARHKGEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRR G + L + K G+ ED E D+ +T + ID + K+ E++ Sbjct: 126 VAVRNIRRKGKEELDRLVKDGEVGEDEGRRAEKDLDDLTQKFVATIDELVKHKESELLEV 185 >gi|332686704|ref|YP_004456478.1| ribosome recycling factor [Melissococcus plutonius ATCC 35311] gi|332370713|dbj|BAK21669.1| ribosome recycling factor [Melissococcus plutonius ATCC 35311] Length = 185 Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats. Identities = 72/180 (40%), Positives = 120/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ +RM L++++ +R GR + S+LD ++VE YG P+NQ+A +++ E R+L Sbjct: 6 LKETTERMKKAEQNLQRELGQIRAGRANASLLDRIQVEYYGVMTPVNQLATISIPEARIL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK + +ER I S++G++P +G ++R+ +P+ TEERR L K AE +K Sbjct: 66 MITPFDKNSIKDIERAIQASDIGISPTSDGNIIRLVIPQLTEERRKELAKEVKKEAENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I+VRNIRRD MD LKK K+G +ED + + E D+Q++TD++IKN+D+ EK+ EI+ Sbjct: 126 IAVRNIRRDTMDTLKKQNKNGDITEDELHTSEKDVQQLTDNSIKNLDNIASEKEAEILEV 185 >gi|331701338|ref|YP_004398297.1| ribosome-recycling factor [Lactobacillus buchneri NRRL B-30929] gi|329128681|gb|AEB73234.1| Ribosome-recycling factor [Lactobacillus buchneri NRRL B-30929] Length = 187 Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats. Identities = 68/179 (37%), Positives = 120/179 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K++M +T L+ D+ ++R G + S+L V V+ YG+ PLNQ+A++T+ E R++ Sbjct: 8 LTEAKEKMKNTREVLEHDVGSIRAGHANASLLSGVMVDYYGAPTPLNQIASITIPEARVI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK + +E+GI+E++LG++P +G +R+ VP TE+RR + K A EKSK Sbjct: 68 LITPYDKSALEGIEKGIYEADLGISPANDGTAIRLAVPALTEDRRKEIAKQVKATGEKSK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +++RN+RR+ MD LK+S KS ++D + E+ +QK+TD IK +D +K++E+M+ Sbjct: 128 VAIRNVRREAMDTLKRSNKSEDITDDELHRYEDQVQKLTDDAIKGVDGIVADKEQEVMN 186 >gi|325962762|ref|YP_004240668.1| ribosome recycling factor [Arthrobacter phenanthrenivorans Sphe3] gi|323468849|gb|ADX72534.1| ribosome recycling factor [Arthrobacter phenanthrenivorans Sphe3] Length = 185 Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats. Identities = 60/180 (33%), Positives = 104/180 (57%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K+D ++RTGR +P + + V VE YGS PL Q+A+ + + R + Sbjct: 6 LLEAEEKMDKAVEVAKEDFASVRTGRANPGLYNKVLVEYYGSPTPLQQLASFAIPDARTI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK + +ER + +S +G NP +G V+RI +PE T+ERR VK+ E +K Sbjct: 66 LITPFDKTALRDIERALSDSEVGANPSNDGNVIRITIPELTKERRKEYVKIVKTKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+RNIRR + L + K G+A ED E ++ +T + + ID + K+ E++ Sbjct: 126 VSIRNIRRKAKETLDRLVKDGEAGEDEGTRAEKELDNLTKAHVDGIDELLKRKEAELLEV 185 >gi|118602299|ref|YP_903514.1| ribosome recycling factor [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|166231221|sp|A1AVT6|RRF_RUTMC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|118567238|gb|ABL02043.1| ribosome recycling factor [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 185 Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats. Identities = 79/186 (42%), Positives = 118/186 (63%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ Q+ + RM +++ LK +R R S+L+ + V+ YGS VPL+QVAN++V Sbjct: 2 LNEI--QQDAQSRMNKSVASLKNAFSKIRANRAHSSLLEQIHVDYYGSMVPLSQVANISV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R VS W+K+MVA +E+ I SNLGLNP GQ++RIP+P T+ERR LVK+ Sbjct: 60 EDSRTFKVSPWEKDMVAVIEKAIMTSNLGLNPQTMGQIMRIPLPPLTQERRGELVKIVKD 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE++K+++RNIRRD K+ K + S D EN IQKITD+ IK I++ F EK+ Sbjct: 120 EAEQAKVAIRNIRRDANSDFKELLKEKEISRDGARKAENSIQKITDTYIKEIEAKFCEKE 179 Query: 181 KEIMHF 186 ++ Sbjct: 180 NSLLEI 185 >gi|229817669|ref|ZP_04447951.1| hypothetical protein BIFANG_02940 [Bifidobacterium angulatum DSM 20098] gi|229785458|gb|EEP21572.1| hypothetical protein BIFANG_02940 [Bifidobacterium angulatum DSM 20098] Length = 184 Score = 224 bits (573), Expect = 3e-57, Method: Composition-based stats. Identities = 71/180 (39%), Positives = 108/180 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K +M T+ K++ +RTGR +P++L+ + V+ YG+ P+ VA++ V EPR L Sbjct: 5 VEQAKAQMAKTVENTKENFAGIRTGRANPALLNGIMVDYYGAPTPIKAVASIGVPEPRTL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +D +VE+ I S+LG++P +G V+R+ +PE TEERR VK+A AE K Sbjct: 65 SVTPFDASQAGAVEKAIRNSDLGVSPNRDGNVIRLTMPELTEERRKEYVKLAKGKAEDGK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRR + + KS K G ED L D+ K+T S ID+ E K+KEIM Sbjct: 125 VAVRNIRRKTKETIDKSVKDGDMGEDEGDRLLKDLDKVTKSVTDEIDALLETKQKEIMEV 184 >gi|23466062|ref|NP_696665.1| ribosome recycling factor [Bifidobacterium longum NCC2705] gi|189439270|ref|YP_001954351.1| ribosome recycling factor [Bifidobacterium longum DJO10A] gi|227547303|ref|ZP_03977352.1| ribosome recycling factor [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239621373|ref|ZP_04664404.1| ribosome recycling factor [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312132645|ref|YP_003999984.1| frr [Bifidobacterium longum subsp. longum BBMN68] gi|317482870|ref|ZP_07941878.1| ribosome recycling factor [Bifidobacterium sp. 12_1_47BFAA] gi|322689306|ref|YP_004209040.1| ribosome recycling factor [Bifidobacterium longum subsp. infantis 157F] gi|322691318|ref|YP_004220888.1| ribosome recycling factor [Bifidobacterium longum subsp. longum JCM 1217] gi|34924973|sp|Q8G483|RRF_BIFLO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238692052|sp|B3DRT4|RRF_BIFLD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|23326787|gb|AAN25301.1| ribosome recycling factor [Bifidobacterium longum NCC2705] gi|189427705|gb|ACD97853.1| Ribosome recycling factor [Bifidobacterium longum DJO10A] gi|227212262|gb|EEI80158.1| ribosome recycling factor [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239515834|gb|EEQ55701.1| ribosome recycling factor [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291516839|emb|CBK70455.1| ribosome recycling factor [Bifidobacterium longum subsp. longum F8] gi|311773596|gb|ADQ03084.1| Frr [Bifidobacterium longum subsp. longum BBMN68] gi|316915715|gb|EFV37129.1| ribosome recycling factor [Bifidobacterium sp. 12_1_47BFAA] gi|320456174|dbj|BAJ66796.1| ribosome recycling factor [Bifidobacterium longum subsp. longum JCM 1217] gi|320460642|dbj|BAJ71262.1| ribosome recycling factor [Bifidobacterium longum subsp. infantis 157F] Length = 183 Score = 224 bits (573), Expect = 3e-57, Method: Composition-based stats. Identities = 68/180 (37%), Positives = 109/180 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + K++M T+ K++ +RTGR +P++L+ + V+ YG+ P+ VA++ V EPR L Sbjct: 4 IDQAKEQMAKTVENTKENFSGIRTGRANPALLNGITVDYYGAPTPIKAVASIGVPEPRTL 63 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +D +VE+ + S+LG++P +G V+R+ +PE TE+RR VK+A AE K Sbjct: 64 SVTPFDASQAGAVEKALRNSDLGISPNRDGNVIRLTMPELTEDRRKEYVKLAKGKAEDGK 123 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRR + + K+ K G+ ED L D+ K+T S ID+ E K+KEIM Sbjct: 124 VAVRNIRRKTKETIDKAVKDGEMGEDEGDRLLKDLDKVTKSVTDEIDTLLETKQKEIMEV 183 >gi|313124038|ref|YP_004034297.1| ribosome-recycling factor [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280601|gb|ADQ61320.1| Ribosome-recycling factor [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 185 Score = 224 bits (573), Expect = 3e-57, Method: Composition-based stats. Identities = 72/177 (40%), Positives = 109/177 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + K M +I + ++ T+R G + S+LD V VE YG PL Q+A +T+ EPR+L Sbjct: 6 IAKAKSNMNKSIEVYQSNLATVRAGVANASLLDRVMVEYYGVPTPLVQMAGITIPEPRVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V++ +DK + +E I S+LGL P +G V+R+ +P+ T ERR + K AE++K Sbjct: 66 VITPYDKTSLNDIEHAILASDLGLTPANDGNVIRLVIPQLTGERRQEIAKEVGKLAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 I+VRN+R++ M LKK K G+ +ED LE ++QKITD + K ID + K+KEI Sbjct: 126 IAVRNVRQEAMKALKKQEKDGEITEDEERRLEKEVQKITDESTKKIDQMADNKRKEI 182 >gi|294671220|ref|ZP_06736073.1| hypothetical protein NEIELOOT_02930 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307048|gb|EFE48291.1| hypothetical protein NEIELOOT_02930 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 185 Score = 224 bits (573), Expect = 3e-57, Method: Composition-based stats. Identities = 69/179 (38%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + + +M ++ LK+++ +RTGR +LD V+VE +GS VP++QV +VT+L+ R + Sbjct: 7 KTAESKMLRSLEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVGSVTLLDARTIG 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V ++ M +E+ I +SNLGLNP G ++R+P+P TEERR L+KV AE+ ++ Sbjct: 67 VKPFESNMAGKIEKAIRDSNLGLNPASVGDLIRVPMPMLTEERRKDLIKVVRGEAEEGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RN+RRD DH+K+ K + SED E +QK+TD+ I +D K++++M Sbjct: 127 SIRNVRRDANDHIKRLLKDKEVSEDEARRGEEAVQKLTDNNIAEVDKILAAKEEDLMAV 185 >gi|326382902|ref|ZP_08204592.1| ribosome recycling factor [Gordonia neofelifaecis NRRL B-59395] gi|326198492|gb|EGD55676.1| ribosome recycling factor [Gordonia neofelifaecis NRRL B-59395] Length = 185 Score = 224 bits (573), Expect = 4e-57, Method: Composition-based stats. Identities = 63/180 (35%), Positives = 109/180 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++M ++ L+ DM ++RTGR +P+M + V +E YG+ P+ QVA + EPR++ Sbjct: 6 LLDAEEKMEKAVAHLRDDMASIRTGRANPAMFNKVVIEYYGAMTPITQVAGINTPEPRLV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +++ + +E I S+LG+NP +G V+R+ VP+ TEERR L K A E +K Sbjct: 66 VIKPYEQSTMNDIETAIRNSDLGVNPTNDGTVIRVAVPQLTEERRKQLGKQARGKGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RN+RR +D LK+ +K G A ED V E ++ T + +D + K+ E++ Sbjct: 126 VAIRNVRRKAVDELKRIQKDGDAGEDEVTRAEKELDTTTRTYTDAVDELVKNKEAELLEV 185 >gi|169824406|ref|YP_001692017.1| ribosome recycling factor [Finegoldia magna ATCC 29328] gi|302380616|ref|ZP_07269081.1| ribosome recycling factor [Finegoldia magna ACS-171-V-Col3] gi|303233629|ref|ZP_07320283.1| ribosome recycling factor [Finegoldia magna BVS033A4] gi|238687737|sp|B0S187|RRF_FINM2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|167831211|dbj|BAG08127.1| ribosome recycling factor [Finegoldia magna ATCC 29328] gi|302311559|gb|EFK93575.1| ribosome recycling factor [Finegoldia magna ACS-171-V-Col3] gi|302495063|gb|EFL54815.1| ribosome recycling factor [Finegoldia magna BVS033A4] Length = 185 Score = 224 bits (573), Expect = 4e-57, Method: Composition-based stats. Identities = 74/180 (41%), Positives = 117/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++++ + T+ LK+++ T+R GR +PS+LD + VE YG+ PL QVA ++ E R+L Sbjct: 6 LKDMETKADKTLHALKEELKTVRAGRANPSILDNIMVEYYGTSTPLKQVATISAPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK ++ +E+ I SNLG+ P +G ++R+P P+ TE+RR L KV Y EKSK Sbjct: 66 TIQPWDKSIMKEIEKQIQASNLGITPSNDGTIIRLPFPQLTEDRRKELTKVVKEYGEKSK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++R+IRRD +D KK K+ + SED + L +DIQ +TD K ID+ +K+ E+M Sbjct: 126 VTIRSIRRDFVDDAKKMEKNAEISEDELHVLLDDIQSLTDKLTKEIDNIVTDKETELMEI 185 >gi|296395044|ref|YP_003659928.1| ribosome recycling factor [Segniliparus rotundus DSM 44985] gi|296182191|gb|ADG99097.1| ribosome recycling factor [Segniliparus rotundus DSM 44985] Length = 185 Score = 224 bits (573), Expect = 4e-57, Method: Composition-based stats. Identities = 62/180 (34%), Positives = 106/180 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++RM + K D +RTGR + S+ V V+ YG+ P+ Q+++V +PR++ Sbjct: 6 LFEAEERMELAVEVAKDDFAAIRTGRATASLFAKVVVDYYGTPTPIPQISSVQTPDPRLV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ ++ + ++E I +S+LGLNP +GQV+R+ +P TEERR K A AE+++ Sbjct: 66 VIKPYEAGQLRAIEEAIQKSDLGLNPSNDGQVVRVAIPALTEERRKEFAKQARGKAEEAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RR + L K K G+ ED VA E ++ K+T + ID ++K+ E++ Sbjct: 126 VTVRNVRRKANEQLGKLSKEGQTGEDDVARAEKELDKLTARFVGVIDELVKKKEAELLEV 185 >gi|154175389|ref|YP_001409189.1| ribosome recycling factor [Campylobacter curvus 525.92] gi|166230772|sp|A7H147|RRF_CAMC5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|112803518|gb|EAU00862.1| ribosome recycling factor [Campylobacter curvus 525.92] Length = 185 Score = 224 bits (572), Expect = 4e-57, Method: Composition-based stats. Identities = 67/176 (38%), Positives = 107/176 (60%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 KD I+ LK+D TLRTG+V+ S+LD V ++ YGS PLNQVA V + + ++ Sbjct: 10 KDGCEKAIASLKRDFTTLRTGKVNISILDHVMIDYYGSMTPLNQVATVLASDASTISITP 69 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 W+K M+ ++ I +N+G+NP +G+ +++ P T E+R K A A EK+K+SVR Sbjct: 70 WEKSMIKTISGAIQAANIGVNPNSDGECVKLFFPPMTIEQRQENAKHAKAMGEKAKVSVR 129 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 N+R+D D +KK K +ED ++++QKITD + ID+ +EK+ E++ Sbjct: 130 NVRKDANDEVKKLEKDKAITEDESKKGQDEVQKITDGYVAKIDALVKEKEAELLKV 185 >gi|283955346|ref|ZP_06372845.1| ribosome recycling factor [Campylobacter jejuni subsp. jejuni 414] gi|283793106|gb|EFC31876.1| ribosome recycling factor [Campylobacter jejuni subsp. jejuni 414] Length = 185 Score = 224 bits (572), Expect = 4e-57, Method: Composition-based stats. Identities = 64/186 (34%), Positives = 109/186 (58%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ + Q + ++ LKKD TLRTG+V+ +LD + V+ YG+ PLNQVA V Sbjct: 2 LNEIFNKQKTQS--EKSLEALKKDFTTLRTGKVNTHILDHITVDYYGTQTPLNQVATVLA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + + ++ W+K ++ ++E I +N+G+NP +G+ +++ P T E+R VK A Sbjct: 60 SDASTISITPWEKPLLKTIESAIAAANIGVNPNNDGESVKLFFPPMTREQREENVKQVKA 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 EK+K+S+RNIR+D D +KK K SED +++QK+TD+ ID + K+ Sbjct: 120 MGEKAKVSIRNIRKDANDAVKKLEKDKTISEDEAKKAYDEVQKLTDAYTAKIDESVKSKE 179 Query: 181 KEIMHF 186 E++ Sbjct: 180 SELLKV 185 >gi|258645593|ref|ZP_05733062.1| ribosome recycling factor [Dialister invisus DSM 15470] gi|260402951|gb|EEW96498.1| ribosome recycling factor [Dialister invisus DSM 15470] Length = 185 Score = 224 bits (572), Expect = 4e-57, Method: Composition-based stats. Identities = 79/181 (43%), Positives = 129/181 (71%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 +L+++ ++M +I L+ + ++RTG+ SPS+LD V V+ YGS P+ QVA+VTV E RM Sbjct: 5 ELKHLSEKMDKSIQALRNEFTSIRTGQASPSLLDRVFVDYYGSKTPVTQVASVTVPEARM 64 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 LVV WDK ++ +E+ I+ S+LGL P+ +G ++R+ +P+ TE+RR LVKV + AE++ Sbjct: 65 LVVQPWDKGILKDIEKAINMSDLGLVPMNDGNLIRMAIPQLTEQRRKDLVKVVNKKAEEA 124 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 K+++RNIRRDG LKK K+ S+D++ +E+ IQK+TD IK++++ ++K KEI+ Sbjct: 125 KVAIRNIRRDGNVFLKKEEKNSDISKDVIKDMEDKIQKLTDQKIKDLEAVTDKKVKEILS 184 Query: 186 F 186 Sbjct: 185 V 185 >gi|282861391|ref|ZP_06270456.1| ribosome recycling factor [Streptomyces sp. ACTE] gi|282564049|gb|EFB69586.1| ribosome recycling factor [Streptomyces sp. ACTE] Length = 185 Score = 224 bits (572), Expect = 4e-57, Method: Composition-based stats. Identities = 61/174 (35%), Positives = 104/174 (59%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M + K+D +RTGR P+M + + + YG+ P+NQ+A+ +V EPRM VV+ +D Sbjct: 12 KMEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMAVVTPFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K + ++E+ I +S+LG+NP +G ++R+ PE T++RR +KVA AE SKIS+R++ Sbjct: 72 KSALRNIEQAIRDSDLGVNPSNDGNIIRVTFPELTQDRRKEFIKVAKTKAEDSKISIRSV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RR + L K K ++ ED V E ++ T + +D + K+ E++ Sbjct: 132 RRKAKESLDKLVKDKESGEDEVRRAEKELDDTTAKYVAQVDELLKHKEAELLEV 185 >gi|296454244|ref|YP_003661387.1| ribosome recycling factor [Bifidobacterium longum subsp. longum JDM301] gi|296183675|gb|ADH00557.1| ribosome recycling factor [Bifidobacterium longum subsp. longum JDM301] Length = 183 Score = 224 bits (572), Expect = 4e-57, Method: Composition-based stats. Identities = 68/180 (37%), Positives = 109/180 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + K++M T+ K++ +RTGR +P++L+ + V+ YG+ P+ VA++ V EPR L Sbjct: 4 IDQAKEQMARTVENTKENFSGIRTGRANPALLNGITVDYYGAPTPIKAVASIGVPEPRTL 63 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +D +VE+ + S+LG++P +G V+R+ +PE TE+RR VK+A AE K Sbjct: 64 SVTPFDASQAGAVEKALRNSDLGISPNRDGNVIRLTMPELTEDRRKEYVKLAKGKAEDGK 123 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRR + + K+ K G+ ED L D+ K+T S ID+ E K+KEIM Sbjct: 124 VAVRNIRRKTKETIDKAVKDGEMGEDEGDRLLKDLDKVTKSVTDEIDTLLETKQKEIMEV 183 >gi|325685953|gb|EGD28016.1| ribosome recycling factor [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 185 Score = 224 bits (572), Expect = 4e-57, Method: Composition-based stats. Identities = 71/177 (40%), Positives = 109/177 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + K M +I + ++ T+R G + S+LD V VE YG PL Q+A +T+ EPR+L Sbjct: 6 IAKAKSNMNKSIEVYQSNLATVRAGVANASLLDRVMVEYYGVPTPLVQMAGITIPEPRVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V++ +DK + +E I S+LGL P +G V+R+ +P+ T ERR + K AE++K Sbjct: 66 VITPYDKTSLNDIEHAILASDLGLTPANDGNVIRLVIPQLTGERRQEIAKEVGKLAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 I+VRN+R++ M LKK K G+ +ED LE ++QK+TD + K ID + K+KEI Sbjct: 126 IAVRNVRQEAMKALKKQEKDGEITEDEERRLEKEVQKVTDESTKKIDQMADNKRKEI 182 >gi|297588384|ref|ZP_06947027.1| ribosome recycling factor [Finegoldia magna ATCC 53516] gi|297573757|gb|EFH92478.1| ribosome recycling factor [Finegoldia magna ATCC 53516] Length = 185 Score = 224 bits (572), Expect = 4e-57, Method: Composition-based stats. Identities = 72/180 (40%), Positives = 117/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++++ + T+ L++++ T+R GR +PS+LD + V+ YG+ PL QVA ++ E R+L Sbjct: 6 LKDMEAKADKTLHALREELKTVRAGRANPSILDNIMVDYYGTSTPLKQVATISAPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK ++ +E+ I SNLG+ P +G ++R+P P+ TE+RR L KV Y EKSK Sbjct: 66 TIQPWDKSIMKEIEKQIQASNLGITPSNDGSIIRLPFPQLTEDRRKELTKVVKEYGEKSK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++R+IRRD +D KK K+ + SED + L +DIQ +TD K ID+ +K+ E+M Sbjct: 126 VTIRSIRRDFVDDAKKMEKNAEISEDELHVLLDDIQSLTDKLTKEIDNIVTDKETELMEI 185 >gi|169633330|ref|YP_001707066.1| ribosome recycling factor [Acinetobacter baumannii SDF] gi|238688138|sp|B0VMU5|RRF_ACIBS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|169152122|emb|CAP01021.1| ribosome releasing factor [Acinetobacter baumannii] Length = 184 Score = 224 bits (572), Expect = 5e-57, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 112/179 (62%), Gaps = 1/179 (0%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM T+ L++ +RTGR PS+L+ V V YGS VPLNQVANV V + R L+ Sbjct: 7 KDSEQRMLKTLESLEQGFAKVRTGRAHPSILNGVMVPYYGSDVPLNQVANVGVEDSRTLI 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +++ MVA++++ I ES+LGLNPI +R+P+P TEE R + K+A + AE +K+ Sbjct: 67 VQPFERTMVAAIDKAIRESDLGLNPITA-DSIRVPLPALTEETRRDMQKIARSEAENAKV 125 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD + +K K + SED +DIQKITD + +D K+ E+M Sbjct: 126 AIRNIRRDVLGDIKALLKEKEISEDDERRAGDDIQKITDKYVAEVDKRLAAKEAELMRV 184 >gi|150021158|ref|YP_001306512.1| ribosome recycling factor [Thermosipho melanesiensis BI429] gi|166231524|sp|A6LMH6|RRF_THEM4 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|149793679|gb|ABR31127.1| ribosome recycling factor [Thermosipho melanesiensis BI429] Length = 185 Score = 224 bits (572), Expect = 5e-57, Method: Composition-based stats. Identities = 75/180 (41%), Positives = 118/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +++M +++ + +++ LRTGR SP++L+ +KV+ YG P+NQVA V V E R L Sbjct: 6 VKKTEEKMKKSVNSIDEELKKLRTGRPSPALLEEIKVDYYGVPTPINQVATVNVTEERSL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ W+K ++ +VE+ I S+LGLNP+ +G V+R+ P T E+R VK A E K Sbjct: 66 IIKPWEKNLLNAVEKAIQASDLGLNPMNDGNVIRLVFPTPTTEQRQKWVKKAKDIVEHGK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I+VRNIRR+ + LK +K+G+ SED LE +IQ +TD ++ +D FE K+KEIM F Sbjct: 126 IAVRNIRREILKELKDLKKNGEISEDDERRLEKEIQNLTDKYVEELDKLFERKEKEIMEF 185 >gi|171742888|ref|ZP_02918695.1| hypothetical protein BIFDEN_02005 [Bifidobacterium dentium ATCC 27678] gi|171278502|gb|EDT46163.1| hypothetical protein BIFDEN_02005 [Bifidobacterium dentium ATCC 27678] Length = 186 Score = 224 bits (572), Expect = 5e-57, Method: Composition-based stats. Identities = 68/186 (36%), Positives = 107/186 (57%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 MN + K +M ++ K++ +RTGR +P++ + + V+ YG+ PL VA + V Sbjct: 1 MNMANIVDQAKAQMAKSVESTKENFSGIRTGRANPALFNGITVDYYGAPTPLKAVATIGV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPR L V+ +D +VE+ + +S+LG +P +G V+R+ +PE TEERR VK+A Sbjct: 61 PEPRTLSVTPFDASQANAVEKALRDSDLGASPRRDGNVIRLTMPELTEERRKEYVKLAKG 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE K++VRNIRR + + K+ K G ED L ++ K+T T +D+ E K+ Sbjct: 121 KAEDGKVAVRNIRRKTKESIDKAIKDGDMGEDEGDRLLKELDKVTKQTTDELDTLLEAKQ 180 Query: 181 KEIMHF 186 KEIM Sbjct: 181 KEIMEV 186 >gi|222054617|ref|YP_002536979.1| ribosome recycling factor [Geobacter sp. FRC-32] gi|254809513|sp|B9M5C3|RRF_GEOSF RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|221563906|gb|ACM19878.1| ribosome recycling factor [Geobacter sp. FRC-32] Length = 185 Score = 224 bits (572), Expect = 5e-57, Method: Composition-based stats. Identities = 76/180 (42%), Positives = 113/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + + M TI L+K+ +RTGR S S+LD +KV+ YG+ PLNQVA + V EPR + Sbjct: 6 ISGMSSHMDKTIDSLRKEYQKVRTGRASTSLLDEIKVDFYGTLSPLNQVATLAVPEPRTI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WD +M+ +E+ I +NLGL P +G+++R+ +P TEERR +VK +AE +K Sbjct: 66 TLQPWDAKMIPPIEKAIMNANLGLTPANDGKLIRLNLPPLTEERRKEIVKQLKKFAEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRR+ +D LKK K K SED + E D+Q +T+S + ID K+KE+M Sbjct: 126 VAVRNIRREAIDDLKKLEKEKKISEDDLKRAEKDVQDVTNSHVARIDEVLLHKEKEVMEV 185 >gi|296112767|ref|YP_003626705.1| ribosome recycling factor [Moraxella catarrhalis RH4] gi|295920461|gb|ADG60812.1| ribosome recycling factor [Moraxella catarrhalis RH4] gi|326561010|gb|EGE11375.1| ribosome recycling factor [Moraxella catarrhalis 7169] gi|326564386|gb|EGE14614.1| ribosome recycling factor [Moraxella catarrhalis 12P80B1] gi|326566761|gb|EGE16900.1| ribosome recycling factor [Moraxella catarrhalis 103P14B1] gi|326567397|gb|EGE17512.1| ribosome recycling factor [Moraxella catarrhalis BC1] gi|326569316|gb|EGE19376.1| ribosome recycling factor [Moraxella catarrhalis BC8] gi|326571477|gb|EGE21492.1| ribosome recycling factor [Moraxella catarrhalis BC7] gi|326575240|gb|EGE25168.1| ribosome recycling factor [Moraxella catarrhalis CO72] gi|326576673|gb|EGE26580.1| ribosome recycling factor [Moraxella catarrhalis 101P30B1] gi|326577652|gb|EGE27529.1| ribosome recycling factor [Moraxella catarrhalis O35E] Length = 184 Score = 224 bits (572), Expect = 5e-57, Method: Composition-based stats. Identities = 76/178 (42%), Positives = 110/178 (61%), Gaps = 1/178 (0%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 + + RM +I L+ LRTGR P +L V V YGS PLNQVA++ V + R L+V Sbjct: 8 DGESRMQKSIEALEAAFSKLRTGRAHPGILSGVMVSYYGSDTPLNQVASINVEDSRTLLV 67 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 +++ MV +V++ I E++LGLNP+ V+R+P+P TEE R + K+A AE+++IS Sbjct: 68 QPFERSMVQAVDKAIREADLGLNPMTA-DVIRVPMPALTEETRRDMQKIARNDAEQTRIS 126 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 VRNIRRD + +K K + SED +DIQK+TD I IDS E+K+ E+M Sbjct: 127 VRNIRRDMLSDIKDLLKDKEISEDDERRAADDIQKLTDKFIATIDSRLEKKESELMEV 184 >gi|330718876|ref|ZP_08313476.1| ribosome recycling factor [Leuconostoc fallax KCTC 3537] Length = 181 Score = 224 bits (571), Expect = 5e-57, Method: Composition-based stats. Identities = 72/182 (39%), Positives = 114/182 (62%), Gaps = 3/182 (1%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D + K RM L++++ +R GR +P++L+ V+VE YG+ PLNQVA++ V E R Sbjct: 3 FDFSDAKARMQKAQDALQRELAGIRAGRANPALLNRVEVEYYGAMTPLNQVASIQVPEAR 62 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 +L+V+ +DK + ++ I+ S+LGLNP +G +R+ +P+ TEERR L K A EK Sbjct: 63 ILLVTPFDKTALDAIVHAINVSDLGLNPASDGNAIRLVIPQLTEERRKELSKDVKAEGEK 122 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +K+++RNIRRD MD +K K +ED + E + QK+TD +K ID EK++E++ Sbjct: 123 AKVAIRNIRRDVMDSIK---KDDALNEDDMHKAETEAQKLTDENVKAIDKIAAEKEEELL 179 Query: 185 HF 186 Sbjct: 180 TI 181 >gi|254495059|ref|ZP_05107983.1| Ribosome recycling factor [Polaribacter sp. MED152] gi|85819409|gb|EAQ40566.1| Ribosome recycling factor [Polaribacter sp. MED152] Length = 184 Score = 224 bits (571), Expect = 5e-57, Method: Composition-based stats. Identities = 81/188 (43%), Positives = 120/188 (63%), Gaps = 6/188 (3%) Query: 1 MNQVID--LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 MN+ I+ L K+ MG+ I+ L+K+++++R G+ +P+ML V V+ YGS PL+QVANV Sbjct: 1 MNEEIEFILDTAKEAMGNAITHLEKELVSIRAGKATPAMLSTVMVDYYGSQTPLSQVANV 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 + R L + W+K M+ +E+ I +NLGLNP+ G ++ I VP TEERR L K A Sbjct: 61 NTPDARTLSIQPWEKNMLQPIEKAIQIANLGLNPMNNGDLIMINVPPLTEERRKGLAKQA 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 A AE +K+ VRN R+D + +KK + S+DM E+D+QK+TD+ +KNID Sbjct: 121 KAEAEHAKVGVRNARKDANNDIKKV----EISDDMKKIAEDDVQKLTDTYVKNIDEKLAV 176 Query: 179 KKKEIMHF 186 K+KEIM Sbjct: 177 KEKEIMTI 184 >gi|87302617|ref|ZP_01085434.1| ribosome releasing factor [Synechococcus sp. WH 5701] gi|87282961|gb|EAQ74918.1| ribosome releasing factor [Synechococcus sp. WH 5701] Length = 179 Score = 224 bits (571), Expect = 5e-57, Method: Composition-based stats. Identities = 61/178 (34%), Positives = 107/178 (60%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 ++ M ++ ++ T+RTGR +PS+LD + +E YG+ PL VA+++ + + + + Sbjct: 2 DLDASMRKSLEATQRTFNTIRTGRANPSLLDKITIEYYGAETPLRSVASLSTPDSQTIQI 61 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 +D +AS+E+ I S+LGL P +G+++RI +P T +RR K+A YAE K++ Sbjct: 62 QPFDSAAMASIEKAIAMSDLGLTPNNDGRLIRINIPPLTADRRKEFCKLASRYAEDGKVA 121 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +RNIRRD ++ +KK K G+ SED + +QK+TD I ++ EK+ +I+ Sbjct: 122 LRNIRRDAIEKIKKQEKDGELSEDQSRDEQEKVQKLTDRFIVELEKSLAEKEADILKV 179 >gi|306822703|ref|ZP_07456081.1| ribosome recycling factor [Bifidobacterium dentium ATCC 27679] gi|304554248|gb|EFM42157.1| ribosome recycling factor [Bifidobacterium dentium ATCC 27679] Length = 186 Score = 224 bits (571), Expect = 5e-57, Method: Composition-based stats. Identities = 69/186 (37%), Positives = 108/186 (58%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 MN + K +M ++ K++ +RTGR +P++L+ + V+ YG+ PL VA + V Sbjct: 1 MNMANIVDQAKAQMAKSVESTKENFSGIRTGRANPALLNGITVDYYGAPTPLKAVATIGV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPR L V+ +D +VE+ + +S+LG +P +G V+R+ +PE TEERR VK+A Sbjct: 61 PEPRTLSVTPFDASQANAVEKALRDSDLGASPRRDGNVIRLTMPELTEERRKEYVKLAKG 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE K++VRNIRR + + K+ K G ED L ++ K+T T +D+ E K+ Sbjct: 121 KAEDGKVAVRNIRRKTKESIDKAIKDGDMGEDEGDRLLKELDKVTKQTTDELDTLLEAKQ 180 Query: 181 KEIMHF 186 KEIM Sbjct: 181 KEIMEV 186 >gi|253681713|ref|ZP_04862510.1| ribosome recycling factor [Clostridium botulinum D str. 1873] gi|253561425|gb|EES90877.1| ribosome recycling factor [Clostridium botulinum D str. 1873] Length = 185 Score = 224 bits (571), Expect = 5e-57, Method: Composition-based stats. Identities = 79/180 (43%), Positives = 119/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K++M +IS LKK++ +++ G+ +PSMLD +KVE YGS P+NQ+ANV+ EPR+L Sbjct: 6 LNKSKEKMDKSISVLKKELSSMKAGKANPSMLDKIKVEYYGSETPINQLANVSSPEPRVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WDK + +ER I +S+LGLNP +G V+R+ VPE TEE R +VK E++K Sbjct: 66 LIQPWDKNSLKDIERAILQSDLGLNPSNDGSVIRLIVPELTEETRKEIVKKVKKMGEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++R+IRRD D +K +K + +ED E+ +QKITD IK ID K+K++M Sbjct: 126 VAIRSIRRDANDKIKNLKKDNEITEDEAKEGEDSVQKITDKAIKEIDEVISLKEKDVMTV 185 >gi|206900181|ref|YP_002250924.1| ribosome recycling factor [Dictyoglomus thermophilum H-6-12] gi|206739284|gb|ACI18342.1| ribosome recycling factor [Dictyoglomus thermophilum H-6-12] Length = 185 Score = 224 bits (571), Expect = 5e-57, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 115/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + I+++M + +KK+ +RTG+ S + D +K+ YG+ +PLNQVA + + E R + Sbjct: 6 FKEIEEKMKKAVEVVKKEFQGIRTGKPSIGIFDEIKISYYGNMMPLNQVATLKIAEGRTV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WDK ++ +E+ I +S LGL P +GQV+R+ P TEERR LVKV H AE + Sbjct: 66 LIQPWDKSIIGEIEKAILKSELGLTPQNDGQVIRVVFPPLTEERRKELVKVVHKEAENGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD ++ KK ++ GK SED L+ ++QK+TD I+ I+ E K+KEIM Sbjct: 126 VAIRNIRRDYLEIFKKEKQEGKISEDEFYRLQEELQKMTDKFIEEIEKLIEMKEKEIMEV 185 >gi|15806522|ref|NP_295233.1| ribosome recycling factor [Deinococcus radiodurans R1] gi|22001957|sp|Q9RU82|RRF_DEIRA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|6459273|gb|AAF11077.1|AE001995_2 ribosome recycling factor [Deinococcus radiodurans R1] Length = 183 Score = 224 bits (571), Expect = 5e-57, Method: Composition-based stats. Identities = 71/185 (38%), Positives = 118/185 (63%), Gaps = 4/185 (2%) Query: 1 MNQVIDLQ-NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVT 59 M + +Q + +++M I + ++ LRTGR +P +L + V+ YGS +P++QVA++T Sbjct: 1 MADMKSIQADTREKMNKAIEAFENNLSVLRTGRANPGILKKIVVDYYGSQMPIDQVASIT 60 Query: 60 VLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 +PR LV++ WD+ + +E+ I +S+LGLNP +G + I +P TEERR LVK A Sbjct: 61 TPDPRTLVITPWDRGALNPIEKAIRDSDLGLNPNNKGDTIFISLPMLTEERRKDLVKNAK 120 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 YAE ++I+VRN+R+ +D +KK ED + E D+QKITD + ++S F++K Sbjct: 121 NYAEDARIAVRNLRKHALDEVKKVE---GLGEDEIKRGEADVQKITDEYVARVESVFQKK 177 Query: 180 KKEIM 184 ++EI+ Sbjct: 178 EQEIL 182 >gi|116514309|ref|YP_813215.1| ribosome recycling factor [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122274959|sp|Q049U5|RRF_LACDB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|116093624|gb|ABJ58777.1| ribosome recycling factor [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 185 Score = 224 bits (571), Expect = 6e-57, Method: Composition-based stats. Identities = 70/179 (39%), Positives = 110/179 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + K M +I + ++ T+R G + S+LD V VE YG PL Q+A +T+ EPR+L Sbjct: 6 IAKAKRNMNKSIEVYQSNLATVRAGVANASLLDRVMVEYYGVPTPLVQMAGITIPEPRVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK + +E I S+LGL P +G V+R+ +P+ T ERR + K AE++K Sbjct: 66 MITPYDKSSLNDIEHAILASDLGLTPANDGNVIRLIIPQLTGERRQEIAKEVGKLAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 I+VRN+R++ M LKK K G+ +ED LE ++QK+TD + K ID + K+KEI+ Sbjct: 126 IAVRNVRQEAMKALKKQEKDGEITEDEERRLEKEVQKVTDESTKKIDQMADNKRKEIIQ 184 >gi|330504241|ref|YP_004381110.1| ribosome recycling factor [Pseudomonas mendocina NK-01] gi|328918527|gb|AEB59358.1| ribosome recycling factor [Pseudomonas mendocina NK-01] Length = 185 Score = 224 bits (571), Expect = 6e-57, Method: Composition-based stats. Identities = 73/179 (40%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ L +++ ++RTGR PS+LD +KV A+GS +PLNQVA +TV + R L Sbjct: 7 KDAQERMSKSLEALGRNLASIRTGRAHPSILDSIKVPAWGSDMPLNQVAAITVEDARTLK 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + DK + A++E+ I S+LGLNP G +R+P+P TEE R K A AE +K+ Sbjct: 67 IVAHDKNLSAAIEKAILTSDLGLNPSSAGTTIRVPMPALTEETRKGYTKQARGVAEDAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD + LKK K+ + SED +++QKITD I ++D E K+ ++M Sbjct: 127 AVRNVRRDALAELKKLSKAKEISEDEERRAADELQKITDKFIGDVDKALEVKEADLMAV 185 >gi|116075317|ref|ZP_01472577.1| ribosome releasing factor [Synechococcus sp. RS9916] gi|116067514|gb|EAU73268.1| ribosome releasing factor [Synechococcus sp. RS9916] Length = 182 Score = 224 bits (571), Expect = 6e-57, Method: Composition-based stats. Identities = 64/179 (35%), Positives = 105/179 (58%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+++ M ++ ++ T+RTGR + S+LD + VE YG+ PL +A +T + + + Sbjct: 4 QDLEASMQKSVEATQRMFNTIRTGRANSSLLDRISVEYYGADTPLKSLATLTTPDSQTIQ 63 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +D +AS+E+ I S LG P +G+++RI VP TEERR K+A YAE+ K+ Sbjct: 64 IQPFDMGALASIEKAIAMSELGFTPNNDGKLIRINVPPLTEERRKEFCKLASKYAEEGKV 123 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD +D +KK K G SED ++ +QK D I ++ EK+ +I+ Sbjct: 124 ALRNIRRDAIDKIKKQEKDGDFSEDQSHDEQDSVQKTLDKYIGILEKHLAEKEADILKV 182 >gi|169795682|ref|YP_001713475.1| ribosome recycling factor [Acinetobacter baumannii AYE] gi|213158373|ref|YP_002319671.1| ribosome recycling factor [Acinetobacter baumannii AB0057] gi|215483169|ref|YP_002325376.1| ribosome recycling factor [Acinetobacter baumannii AB307-0294] gi|239501622|ref|ZP_04660932.1| ribosome recycling factor [Acinetobacter baumannii AB900] gi|260554744|ref|ZP_05826965.1| ribosome recycling factor [Acinetobacter baumannii ATCC 19606] gi|301346282|ref|ZP_07227023.1| ribosome recycling factor [Acinetobacter baumannii AB056] gi|301512091|ref|ZP_07237328.1| ribosome recycling factor [Acinetobacter baumannii AB058] gi|301595691|ref|ZP_07240699.1| ribosome recycling factor [Acinetobacter baumannii AB059] gi|332852500|ref|ZP_08434239.1| ribosome recycling factor [Acinetobacter baumannii 6013150] gi|332871296|ref|ZP_08439845.1| ribosome recycling factor [Acinetobacter baumannii 6013113] gi|332873908|ref|ZP_08441848.1| ribosome recycling factor [Acinetobacter baumannii 6014059] gi|226703248|sp|B7H1U3|RRF_ACIB3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226703249|sp|B7I9V2|RRF_ACIB5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238685521|sp|A3M657|RRF_ACIBT RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238688040|sp|B0V6F0|RRF_ACIBY RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|169148609|emb|CAM86475.1| ribosome releasing factor [Acinetobacter baumannii AYE] gi|193077567|gb|ABO12401.2| ribosome releasing factor [Acinetobacter baumannii ATCC 17978] gi|213057533|gb|ACJ42435.1| ribosome recycling factor [Acinetobacter baumannii AB0057] gi|213987944|gb|ACJ58243.1| ribosome recycling factor [Acinetobacter baumannii AB307-0294] gi|260411286|gb|EEX04583.1| ribosome recycling factor [Acinetobacter baumannii ATCC 19606] gi|322508741|gb|ADX04195.1| ribosome releasing factor [Acinetobacter baumannii 1656-2] gi|323518346|gb|ADX92727.1| ribosome recycling factor [Acinetobacter baumannii TCDC-AB0715] gi|332729202|gb|EGJ60545.1| ribosome recycling factor [Acinetobacter baumannii 6013150] gi|332731580|gb|EGJ62866.1| ribosome recycling factor [Acinetobacter baumannii 6013113] gi|332737894|gb|EGJ68781.1| ribosome recycling factor [Acinetobacter baumannii 6014059] Length = 184 Score = 224 bits (571), Expect = 6e-57, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 112/179 (62%), Gaps = 1/179 (0%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM T+ L++ +RTGR PS+L+ V V YGS VPLNQVANV V + R L+ Sbjct: 7 KDSEQRMLKTLESLEQGFAKVRTGRAHPSILNGVMVPYYGSDVPLNQVANVGVEDSRTLI 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +++ MVA++++ I ES+LGLNPI +R+P+P TEE R + K+A + AE +K+ Sbjct: 67 VQPFERTMVAAIDKAIRESDLGLNPITA-DSIRVPLPALTEETRRDMQKIARSEAENAKV 125 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD + +K K + SED +DIQKITD + +D K+ E+M Sbjct: 126 AIRNIRRDVLGDIKALLKEKEISEDDERRAGDDIQKITDKYVAEVDKRLAAKEAELMKV 184 >gi|119025802|ref|YP_909647.1| ribosome recycling factor [Bifidobacterium adolescentis ATCC 15703] gi|154487366|ref|ZP_02028773.1| hypothetical protein BIFADO_01216 [Bifidobacterium adolescentis L2-32] gi|166230413|sp|A1A1I2|RRF_BIFAA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|118765386|dbj|BAF39565.1| ribosome recycling factor [Bifidobacterium adolescentis ATCC 15703] gi|154083884|gb|EDN82929.1| hypothetical protein BIFADO_01216 [Bifidobacterium adolescentis L2-32] Length = 184 Score = 224 bits (571), Expect = 6e-57, Method: Composition-based stats. Identities = 70/186 (37%), Positives = 109/186 (58%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M ++D K +M ++ K++ +RTGR +P++L+ + V+ YG+ PL VA + V Sbjct: 1 MATIVD--QAKAQMAKSVESTKENFSGIRTGRANPALLNGITVDYYGAPTPLKAVATIGV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPR L V+ +D +VE+ + +S+LG +P +G V+R+ +PE TEERR VK+A Sbjct: 59 PEPRTLAVTPFDASQANAVEKALRDSDLGASPRRDGNVIRLTMPELTEERRKEYVKIAKG 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE K++VRNIRR + L K+ K G ED L ++ K+T T +D+ E K+ Sbjct: 119 KAEDGKVAVRNIRRKAKESLDKAIKDGDMGEDEGDRLLKELDKVTKQTTDELDALLETKQ 178 Query: 181 KEIMHF 186 KEIM Sbjct: 179 KEIMEV 184 >gi|261416241|ref|YP_003249924.1| ribosome recycling factor [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372697|gb|ACX75442.1| ribosome recycling factor [Fibrobacter succinogenes subsp. succinogenes S85] gi|302325448|gb|ADL24649.1| ribosome recycling factor [Fibrobacter succinogenes subsp. succinogenes S85] Length = 177 Score = 224 bits (571), Expect = 6e-57, Method: Composition-based stats. Identities = 66/180 (36%), Positives = 115/180 (63%), Gaps = 3/180 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + ++M I +++ +R G+ SP++L+ V+++ YG+ P++QVA ++V EPRML Sbjct: 1 MSEYSEKMDKAIEATEREFSKIRAGQASPAILNGVRIDYYGTPTPISQVAKISVPEPRML 60 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ W+K++V ++++ I +N+GL P+ +G +R+ +P T ERR L K+A +AE + Sbjct: 61 LVTPWEKQLVDTIDKAILAANIGLTPMKDGNCIRVTLPILTTERRKELAKIARKHAEDGR 120 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD D LK K+ + SED V +++IQK TD I ID EK+ +I+ Sbjct: 121 VAIRNIRRDANDALK---KNKEISEDEVKKQQDEIQKATDKAIAEIDRLLAEKEADILKV 177 >gi|325143201|gb|EGC65541.1| ribosome recycling factor [Neisseria meningitidis 961-5945] Length = 185 Score = 223 bits (570), Expect = 6e-57, Method: Composition-based stats. Identities = 73/179 (40%), Positives = 112/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + + +M ++ LK+++ +RTGR +LD V+VE +GS V ++QVANVT+L+ R + Sbjct: 7 KTAEGKMQRSVEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMVSVSQVANVTLLDARTIG 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V ++ M A VE+ I +SNLGLNP G ++R+P+P TEERR L+KV AE+ ++ Sbjct: 67 VKPFEGNMAAKVEKAIRDSNLGLNPAAVGDLIRVPMPMLTEERRKDLIKVVRGEAEEGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RN+RRD DH+KK K + SED E +QK+TD I D K++++M Sbjct: 127 SIRNVRRDANDHIKKLLKDKEISEDEARRGEEAVQKLTDKYITEADKLLTAKEEDLMAI 185 >gi|157828071|ref|YP_001494313.1| ribosome recycling factor [Rickettsia rickettsii str. 'Sheila Smith'] gi|165932770|ref|YP_001649559.1| ribosome recycling factor [Rickettsia rickettsii str. Iowa] gi|166231219|sp|A8GQY0|RRF_RICRS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|189044068|sp|B0BWC7|RRF_RICRO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|157800552|gb|ABV75805.1| ribosome recycling factor [Rickettsia rickettsii str. 'Sheila Smith'] gi|165907857|gb|ABY72153.1| ribosome recycling factor (RRF) [Rickettsia rickettsii str. Iowa] Length = 186 Score = 223 bits (570), Expect = 6e-57, Method: Composition-based stats. Identities = 84/179 (46%), Positives = 122/179 (68%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N++++M + L ++ LRT R S ++LD V VEAYGS +PL+QVA+++ + R + Sbjct: 8 KNLQEKMEKALKVLDHELKGLRTSRASVNLLDSVTVEAYGSKMPLSQVASLSTPDARTIN 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V VWDK MV+SVE+GI +NLGL P +GQ++R+P+P TEERR LVK+AH Y E +KI Sbjct: 68 VQVWDKSMVSSVEKGITIANLGLTPATDGQLIRLPIPALTEERRTELVKLAHKYGEDTKI 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RNIRRDG + LKK K ++D SL +QK+TD +DS ++K++EIM Sbjct: 128 SLRNIRRDGNEVLKKLEKDNVIAKDEHHSLSEQVQKLTDDYSSKVDSVIKQKEQEIMTV 186 >gi|226356272|ref|YP_002786012.1| ribosome recycling factor [Deinococcus deserti VCD115] gi|259494537|sp|C1CVP1|RRF_DEIDV RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226318262|gb|ACO46258.1| putative Ribosome recycling factor (Ribosome-releasing factor) (RRF) [Deinococcus deserti VCD115] Length = 183 Score = 223 bits (570), Expect = 7e-57, Method: Composition-based stats. Identities = 75/185 (40%), Positives = 118/185 (63%), Gaps = 4/185 (2%) Query: 1 MNQVIDLQ-NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVT 59 M + +Q + ++RMG I L+ ++ LRTGR +P +L V V+ YGS +P++QVA++T Sbjct: 1 MADMKSIQADARERMGKAIEALESNLSVLRTGRANPGILKKVIVDYYGSTMPIDQVASIT 60 Query: 60 VLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 + R LV++ WD+ + +E+ I +S+LGLNP +G + I +P TEERR LVK A Sbjct: 61 TPDARTLVITPWDRGALGPIEKAIRDSDLGLNPNNKGDTIFISLPMLTEERRKDLVKNAK 120 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 YAE ++I+VRNIR+ +D +KK +D + E ++QKITD I +DS F +K Sbjct: 121 NYAEDARIAVRNIRKHALDEVKKVE---GVGDDEIKRGEAEVQKITDEFIARVDSTFHKK 177 Query: 180 KKEIM 184 ++EI+ Sbjct: 178 EQEIL 182 >gi|281355491|ref|ZP_06241985.1| ribosome recycling factor [Victivallis vadensis ATCC BAA-548] gi|281318371|gb|EFB02391.1| ribosome recycling factor [Victivallis vadensis ATCC BAA-548] Length = 188 Score = 223 bits (570), Expect = 7e-57, Method: Composition-based stats. Identities = 71/180 (39%), Positives = 116/180 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++++ M T LK +RTG+ SP++++ + VE YG+ L +A +T EPR+L Sbjct: 9 LDSLEEHMMKTEDALKNSFAAIRTGKASPALVEGITVEYYGTQTRLRDIAGITAPEPRLL 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WD V+++E+ I SN+G+ P+ +G+ L++P+PE +++RR ALVK A + E +K Sbjct: 69 VIQPWDASAVSAIEKAILASNVGITPMSDGRTLKLPIPELSQDRRAALVKQAKSEVEDAK 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRR+G D KK++K G +ED + DIQK+TD I +D F K+KE+M Sbjct: 129 VALRNIRREGNDAAKKAQKDGLLTEDEHKKMLEDIQKLTDRYIAGLDKEFSAKEKELMTV 188 >gi|146308071|ref|YP_001188536.1| ribosome recycling factor [Pseudomonas mendocina ymp] gi|166231209|sp|A4XWT8|RRF_PSEMY RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|145576272|gb|ABP85804.1| ribosome recycling factor [Pseudomonas mendocina ymp] Length = 185 Score = 223 bits (570), Expect = 7e-57, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RMG ++ L +++ ++RTGR PS+LD VKV A+GS +PLNQVA +TV + R L Sbjct: 7 KDAQERMGKSLEALDRNLASIRTGRAHPSILDSVKVPAWGSDMPLNQVAAITVEDARTLK 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + DK + A++E+ I S+LGLNP G +R+P+P TEE R K A AE +K+ Sbjct: 67 IVAHDKNLSAAIEKAIMTSDLGLNPSSAGTTIRVPMPALTEETRKGYTKQARGVAEDAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+RRD + LKK K+ + SED +++QKITD I ++D E K+ ++M Sbjct: 127 AVRNVRRDALAELKKLAKAKEISEDEERRAADELQKITDKFIADVDKALEVKEADLMAV 185 >gi|157414532|ref|YP_001481788.1| ribosome recycling factor [Campylobacter jejuni subsp. jejuni 81116] gi|172047024|sp|A8FK24|RRF_CAMJ8 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|157385496|gb|ABV51811.1| ribosome recycling factor [Campylobacter jejuni subsp. jejuni 81116] gi|315932033|gb|EFV10986.1| ribosome recycling factor [Campylobacter jejuni subsp. jejuni 327] Length = 185 Score = 223 bits (570), Expect = 7e-57, Method: Composition-based stats. Identities = 65/186 (34%), Positives = 110/186 (59%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ + Q + ++ LKKD TLRTG+V+ +LD + V+ YG+ PLNQVA V Sbjct: 2 LNEIFNKQKTQS--EKSLEALKKDFTTLRTGKVNTHILDHITVDYYGTQTPLNQVATVLA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + + ++ W+K ++ ++E I +N+G+NP +G+ +++ P T E+R VK A A Sbjct: 60 SDASTISITPWEKPLLKTIESAIAAANIGVNPNNDGESVKLFFPPMTREQREENVKQAKA 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 EK+K+S+RNIR+D D +KK K SED +++QK+TD+ ID + K+ Sbjct: 120 MGEKAKVSIRNIRKDANDAVKKLEKDKAISEDEAKKAYDEVQKLTDTYTTKIDESVKSKE 179 Query: 181 KEIMHF 186 E++ Sbjct: 180 SELLKV 185 >gi|34556750|ref|NP_906565.1| ribosome recycling factor [Wolinella succinogenes DSM 1740] gi|39932012|sp|Q7MAD8|RRF_WOLSU RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|34482464|emb|CAE09465.1| RIBOSOME RECYCLING FACTOR [Wolinella succinogenes] Length = 186 Score = 223 bits (570), Expect = 8e-57, Method: Composition-based stats. Identities = 69/186 (37%), Positives = 116/186 (62%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N+V Q K+ M TI +K+D TLRTG+VS ++++ ++V+ YG+ PL+QV +V Sbjct: 3 LNEVY--QYTKEHMEKTIDAMKRDFATLRTGKVSTAIVEPIRVDYYGTPTPLSQVGSVIA 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + LV+S W+K ++ +E+ I E+N+G+NP +G V+++ P T E+R + K A A Sbjct: 61 SDATTLVISPWEKNLLKGIEKAIQEANIGVNPNNDGDVIKLFFPPMTSEQRKEIAKDAKA 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 EK+K++VRNIR++ D +KK K +ED +++QK TD +K ID + K+ Sbjct: 121 LGEKAKVAVRNIRKESNDKIKKLEKDKLITEDQSKKAHDEVQKYTDDYVKKIDDMVKSKE 180 Query: 181 KEIMHF 186 +EI+ Sbjct: 181 EEILKV 186 >gi|308176749|ref|YP_003916155.1| ribosome-recycling factor [Arthrobacter arilaitensis Re117] gi|307744212|emb|CBT75184.1| ribosome-recycling factor [Arthrobacter arilaitensis Re117] Length = 185 Score = 223 bits (570), Expect = 8e-57, Method: Composition-based stats. Identities = 59/180 (32%), Positives = 99/180 (55%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++M TI K+D T+RTGR P M V V+ YGS PL Q+A+ V E R + Sbjct: 6 LAETAEKMERTIDAAKEDFATIRTGRAHPGMYSKVMVDYYGSPTPLQQLASFAVPEARTI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D + +E+ + + +G NP +G+++R+ +P TEERR VK+A A E ++ Sbjct: 66 TITPFDVTALREIEKALGDPEVGANPSSDGKMIRVVLPVLTEERRKEYVKLAKAKGEDAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RN RR D + K K G+ ED E D+ +T + ++D + K+ E++ Sbjct: 126 VALRNHRRKAKDTIDKLVKDGEIGEDEGTRAEKDLDALTKKHVDSVDEILKNKEAELLEV 185 >gi|320008276|gb|ADW03126.1| ribosome recycling factor [Streptomyces flavogriseus ATCC 33331] Length = 185 Score = 223 bits (570), Expect = 8e-57, Method: Composition-based stats. Identities = 62/174 (35%), Positives = 104/174 (59%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M + K+D +RTGR P+M + + + YG+ P+NQ+A+ +V EPRM VV+ +D Sbjct: 12 KMEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMAVVTPFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K + ++E+ I +S+LG+NP +G ++R+ PE T++RR +KVA AE SKIS+R+I Sbjct: 72 KTALRNIEQAIRDSDLGVNPSNDGNIIRVTFPELTQDRRKEFIKVAKTKAEDSKISIRSI 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RR + L K K ++ ED V E ++ T + +D + K+ E++ Sbjct: 132 RRKAKESLDKLVKDKESGEDEVRRAEKELDDTTAKYVAQVDELLKHKEAELLEV 185 >gi|157803342|ref|YP_001491891.1| ribosome recycling factor [Rickettsia canadensis str. McKiel] gi|166231218|sp|A8EXM3|RRF_RICCK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|157784605|gb|ABV73106.1| ribosome recycling factor [Rickettsia canadensis str. McKiel] Length = 186 Score = 223 bits (570), Expect = 8e-57, Method: Composition-based stats. Identities = 84/186 (45%), Positives = 125/186 (67%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ +N++++M + L ++ LRTGR S ++LD V VEAYGS +PL+QVA+++ Sbjct: 1 MDTETLKKNLQEKMEKALKVLDHELKGLRTGRASVNLLDSVIVEAYGSKIPLSQVASIST 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R + V VWDK MV+ VE+GI +NLGL P +GQ++R+P+P TEERR LVK+AH Sbjct: 61 PDARTINVQVWDKSMVSLVEKGITIANLGLTPATDGQLIRLPIPILTEERRKELVKLAHK 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 Y E +KIS+RNIRRDG + LKK K+ ++D SL +QK+T+ +DS ++K+ Sbjct: 121 YGEDTKISLRNIRRDGNEELKKLEKNNILTKDEHHSLSEQVQKLTNDYSNKVDSAIKQKE 180 Query: 181 KEIMHF 186 +EIM Sbjct: 181 QEIMTV 186 >gi|331269638|ref|YP_004396130.1| ribosome recycling factor [Clostridium botulinum BKT015925] gi|329126188|gb|AEB76133.1| ribosome recycling factor [Clostridium botulinum BKT015925] Length = 185 Score = 223 bits (570), Expect = 8e-57, Method: Composition-based stats. Identities = 77/180 (42%), Positives = 118/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M TIS LKK++ +++ G+ +P+MLD +KVE YGS P+NQ+ANV+ EPR+L Sbjct: 6 LNKSQEKMDKTISVLKKELSSMKAGKANPAMLDKIKVEYYGSETPINQLANVSSPEPRVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WDK + +ER I +S+LGLNP +G V+R+ VPE TEE R +VK E++K Sbjct: 66 LIQPWDKNSLKDIERAILQSDLGLNPSNDGSVIRLIVPELTEETRKEIVKKVKKMGEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++R+IRRD D +K +K + +ED E+ +QKITD IK ID K+ ++M Sbjct: 126 VAIRSIRRDANDKIKNLKKDNEVTEDEAKEGEDSVQKITDKAIKQIDEVISSKENDVMSI 185 >gi|283456086|ref|YP_003360650.1| ribosome Recycling Factor (RRF) [Bifidobacterium dentium Bd1] gi|283102720|gb|ADB09826.1| Ribosome Recycling Factor (RRF) [Bifidobacterium dentium Bd1] Length = 184 Score = 223 bits (570), Expect = 8e-57, Method: Composition-based stats. Identities = 68/186 (36%), Positives = 108/186 (58%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M ++D K +M ++ K++ +RTGR +P++ + + V+ YG+ PL VA + V Sbjct: 1 MANIVD--QAKAQMAKSVESTKENFSGIRTGRANPALFNGITVDYYGAPTPLKAVATIGV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPR L V+ +D +VE+ + +S+LG +P +G V+R+ +PE TEERR VK+A Sbjct: 59 PEPRTLSVTPFDASQANAVEKALRDSDLGASPRRDGNVIRLTMPELTEERRKEYVKLAKG 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE K++VRNIRR + + K+ K G ED L ++ K+T T +D+ E K+ Sbjct: 119 KAEDGKVAVRNIRRKTKESIDKAIKDGDMGEDEGDRLLKELDKVTKQTTDELDTLLEAKQ 178 Query: 181 KEIMHF 186 KEIM Sbjct: 179 KEIMEV 184 >gi|167041121|gb|ABZ05881.1| putative Ribosome recycling factor [uncultured marine microorganism HF4000_001A02] Length = 185 Score = 223 bits (570), Expect = 8e-57, Method: Composition-based stats. Identities = 64/179 (35%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ RM ++ + ++ +RTGR +P +L+ ++VE YGS +P+NQV+ V++ +PR++ Sbjct: 7 KDATHRMDQAVAHTRMELAKVRTGRANPDLLNAIQVEYYGSMMPMNQVSTVSIPDPRLIT 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + ++K ++ +E+ I SNLGL P G + IP+P +EERR L+K H E+ ++ Sbjct: 67 LQPFEKSLIPVIEKAIMNSNLGLTPSNNGNAVLIPIPALSEERRKDLIKYVHQVVEEGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRN+RRD + H+K+ K SED + E ++Q +TD +++++ E K+KE+M F Sbjct: 127 SVRNVRRDALHHVKEFGKEEHVSEDEIHRQETEMQTLTDKHVESLNEMQEHKEKELMAF 185 >gi|167752630|ref|ZP_02424757.1| hypothetical protein ALIPUT_00885 [Alistipes putredinis DSM 17216] gi|167659699|gb|EDS03829.1| hypothetical protein ALIPUT_00885 [Alistipes putredinis DSM 17216] Length = 185 Score = 223 bits (569), Expect = 9e-57, Method: Composition-based stats. Identities = 72/186 (38%), Positives = 116/186 (62%), Gaps = 1/186 (0%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ L DRM TI L+++++ +R G+ SP++L+ V V+ YGS P++ VA+VTV Sbjct: 1 MDTKTILSEASDRMQKTIEHLEEELLNIRAGKASPTVLNGVFVDYYGSQTPISGVASVTV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + + +++ WDK ++ ++E+ I +SN+GL P G+ +R+ +P TEERR LVK Sbjct: 61 PDAKTILIQPWDKNLIRAIEKAIIDSNIGLTPSNNGEQIRLSIPPLTEERRKELVKQVRQ 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE ++IS+RN RRD ++ KK++K G SED E QK+ D K++D+ + K+ Sbjct: 121 EAETARISLRNARRDAVEAFKKAQKEG-MSEDEAKDGETQAQKLLDKFTKSLDAILDNKE 179 Query: 181 KEIMHF 186 KEIM Sbjct: 180 KEIMTV 185 >gi|315123821|ref|YP_004065825.1| ribosome releasing factor [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315017543|gb|ADT65636.1| ribosome releasing factor [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 185 Score = 223 bits (569), Expect = 9e-57, Method: Composition-based stats. Identities = 65/186 (34%), Positives = 110/186 (59%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ + Q + ++ LKKD TLRTG+V+ +LD + V+ YG+ PLNQVA V Sbjct: 2 LNEIFNKQKTQS--EKSLEALKKDFTTLRTGKVNTHILDHITVDYYGTQTPLNQVATVLA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + + ++ W+K ++ ++E I +N+G+NP +G+ +++ P T E+R VK A A Sbjct: 60 SDASTISITPWEKPLLKTIESAIAATNIGVNPNNDGESVKLFFPPMTREQREENVKQAKA 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 EK+K+S+RNIR+D D +KK K SED +++QK+TD+ ID + K+ Sbjct: 120 MGEKAKVSIRNIRKDANDAVKKLEKDKAISEDEAKKAYDEVQKLTDTYTTKIDESVKNKE 179 Query: 181 KEIMHF 186 E++ Sbjct: 180 SELLKV 185 >gi|256851266|ref|ZP_05556655.1| ribosome recycling factor [Lactobacillus jensenii 27-2-CHN] gi|260660690|ref|ZP_05861605.1| ribosome recycling factor [Lactobacillus jensenii 115-3-CHN] gi|282934734|ref|ZP_06339977.1| ribosome recycling factor [Lactobacillus jensenii 208-1] gi|297206133|ref|ZP_06923528.1| ribosome recycling factor [Lactobacillus jensenii JV-V16] gi|256616328|gb|EEU21516.1| ribosome recycling factor [Lactobacillus jensenii 27-2-CHN] gi|260548412|gb|EEX24387.1| ribosome recycling factor [Lactobacillus jensenii 115-3-CHN] gi|281301309|gb|EFA93610.1| ribosome recycling factor [Lactobacillus jensenii 208-1] gi|297149259|gb|EFH29557.1| ribosome recycling factor [Lactobacillus jensenii JV-V16] Length = 185 Score = 223 bits (569), Expect = 9e-57, Method: Composition-based stats. Identities = 70/177 (39%), Positives = 114/177 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + K+ M +I+ +K++ +R G + S+L+ VKV+ YG PL Q+++VT+ E R+L Sbjct: 6 IAKAKENMDKSIAVYQKELGNIRAGVANASLLEGVKVDYYGVPTPLTQMSSVTIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + ++E + S+LGL P +G V+R+ +P+ T ERR + K AE++K Sbjct: 66 LVTPYDKSSLDNIEHALLASDLGLTPANDGNVIRLVIPQLTGERREEIAKQVGKQAEQAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 I++RN+RR+ MD LKK K+G +ED LE D+QK+TD K +D +EK+KEI Sbjct: 126 IAIRNVRREAMDSLKKQEKNGDITEDEQKRLEKDVQKVTDDATKRVDQLADEKRKEI 182 >gi|293609255|ref|ZP_06691557.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827707|gb|EFF86070.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325122521|gb|ADY82044.1| ribosome releasing factor [Acinetobacter calcoaceticus PHEA-2] Length = 184 Score = 223 bits (569), Expect = 9e-57, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 111/179 (62%), Gaps = 1/179 (0%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM T+ L+ +RTGR PS+L+ V V YGS VPLNQVANV V + R L+ Sbjct: 7 KDSEQRMLKTLESLELGFAKVRTGRAHPSILNGVMVPYYGSDVPLNQVANVGVEDSRTLL 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +++ MV+++++ I ES+LGLNPI +R+P+P TEE R + K+A + AE +K+ Sbjct: 67 VQPFERTMVSAIDKAIRESDLGLNPITA-DAIRVPLPALTEETRRDMQKIARSEAENAKV 125 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD + +K K + SED +DIQKITD + +D K+ E+M Sbjct: 126 AIRNIRRDVLGDIKALLKEKEISEDDERRAGDDIQKITDKYVAEVDKRLAAKEAELMKV 184 >gi|309800830|ref|ZP_07694962.1| ribosome recycling factor [Bifidobacterium dentium JCVIHMP022] gi|308222366|gb|EFO78646.1| ribosome recycling factor [Bifidobacterium dentium JCVIHMP022] Length = 184 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 69/186 (37%), Positives = 109/186 (58%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M ++D K +M ++ K++ +RTGR +P++L+ + V+ YG+ PL VA + V Sbjct: 1 MANIVD--QAKAQMAKSVESTKENFSGIRTGRANPALLNGITVDYYGAPTPLKAVATIGV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPR L V+ +D +VE+ + +S+LG +P +G V+R+ +PE TEERR VK+A Sbjct: 59 PEPRTLSVTPFDASQANAVEKALRDSDLGASPRRDGNVIRLTMPELTEERRKEYVKLAKG 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE K++VRNIRR + + K+ K G ED L ++ K+T T +D+ E K+ Sbjct: 119 KAEDGKVAVRNIRRKTKESIDKAIKDGDMGEDEGDRLLKELDKVTKQTTDELDTLLEAKQ 178 Query: 181 KEIMHF 186 KEIM Sbjct: 179 KEIMEV 184 >gi|56707469|ref|YP_169365.1| ribosome recycling factor [Francisella tularensis subsp. tularensis SCHU S4] gi|110669940|ref|YP_666497.1| ribosome recycling factor [Francisella tularensis subsp. tularensis FSC198] gi|254370837|ref|ZP_04986842.1| ribosome recycling factor [Francisella tularensis subsp. tularensis FSC033] gi|60390229|sp|Q5NHX7|RRF_FRATT RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|122971071|sp|Q14JC9|RRF_FRAT1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|56603961|emb|CAG44949.1| ribosome recycling factor [Francisella tularensis subsp. tularensis SCHU S4] gi|110320273|emb|CAL08332.1| ribosome recycling factor [Francisella tularensis subsp. tularensis FSC198] gi|151569080|gb|EDN34734.1| ribosome recycling factor [Francisella tularensis subsp. tularensis FSC033] gi|282158613|gb|ADA78004.1| ribosome recycling factor [Francisella tularensis subsp. tularensis NE061598] Length = 185 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 69/180 (38%), Positives = 109/180 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ ++RM ++ L D+ +RTGR P +L V ++ YG P+ Q AN+TVL+ R L Sbjct: 6 LKDAENRMKKSLEVLADDLAKIRTGRAQPDLLAHVTIDYYGVETPITQAANITVLDARTL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ W+K + + +E+ I S+LGLNP G LR+P+P EERR LVK+ + E + Sbjct: 66 GITPWEKGLSSKIEKAILTSDLGLNPTNLGDSLRVPMPALNEERRKELVKLVKSETEAGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+RNIRRD +K+ K + +ED E+DIQKITD I D+ +K++++M Sbjct: 126 VSIRNIRRDANGDIKELLKEKEITEDQAKKAEDDIQKITDKMIAQADALAAKKEQDLMAV 185 >gi|182435653|ref|YP_001823372.1| ribosome recycling factor [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464169|dbj|BAG18689.1| putative ribosome recycling factor [Streptomyces griseus subsp. griseus NBRC 13350] Length = 186 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 61/174 (35%), Positives = 103/174 (59%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M + K+D +RTGR P+M + + + YG+ P+NQ+A+ +V E RM VV+ +D Sbjct: 13 KMEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEARMAVVTPFD 72 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K + ++E+ I +S+LG+NP +G ++R+ PE T++RR +KVA AE SKIS+R+I Sbjct: 73 KSALRNIEQAIRDSDLGVNPSNDGNIIRVTFPELTQDRRKEYIKVAKTKAEDSKISIRSI 132 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RR + L K K ++ ED V E ++ T + +D + K+ E++ Sbjct: 133 RRKAKETLDKLVKDKESGEDEVRRAEKELDDTTAKYVAQVDELLKHKEAELLEV 186 >gi|332830277|gb|EGK02905.1| ribosome-recycling factor [Dysgonomonas gadei ATCC BAA-286] Length = 187 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 114/179 (63%), Gaps = 1/179 (0%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q +++M ++ FL + + +R G+ +P +LD +K+E YGS PL+ VA + + R +V Sbjct: 10 QKAEEKMQASVEFLDETLSRIRAGKANPHILDGIKLEYYGSLTPLSGVAAINTPDARTIV 69 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + W+K+M+ VE+ I S++G+ P G+++R+ +P TEERR LVK A AE +K+ Sbjct: 70 IQPWEKQMLKEVEKAILNSDVGITPDNNGEIIRLSIPPLTEERRKQLVKQAKQEAEDAKV 129 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RN RRD +D +KKS K G +EDM END+QK+ D IK ID F K+KEI+ Sbjct: 130 SIRNARRDAIDSIKKSVKDG-VAEDMAKDAENDMQKLHDKYIKKIDDVFALKEKEILTV 187 >gi|309811476|ref|ZP_07705258.1| ribosome recycling factor [Dermacoccus sp. Ellin185] gi|308434527|gb|EFP58377.1| ribosome recycling factor [Dermacoccus sp. Ellin185] Length = 186 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 56/180 (31%), Positives = 101/180 (56%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M I K+D ++RTGR + +M + + V+ YG+ PL Q+A+ E R + Sbjct: 7 LLEAEEKMDKAIEATKEDFASIRTGRANAAMFNRLTVDYYGAPTPLQQLASFQTPEARTI 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +DK ++ +E+ + +S+LG+NP +G +R +P TEERR +K+A AE + Sbjct: 67 LIIPFDKSAISEIEKTLRDSDLGVNPSNDGNQIRCILPALTEERRKDYIKMAKDKAENGR 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +SVRN+RR + K K + ED A E D+ +T + +D+ + K+ E++ Sbjct: 127 VSVRNVRRKANQDIDKLVKDKEVGEDDGARAEKDLDAMTKKRVDTVDALLKGKEAELLEV 186 >gi|326563741|gb|EGE13992.1| ribosome recycling factor [Moraxella catarrhalis 46P47B1] Length = 184 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 76/178 (42%), Positives = 111/178 (62%), Gaps = 1/178 (0%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 + + RM +I L+ LRTGR P +L V V YGS PLNQVA++ V + R L+V Sbjct: 8 DGESRMQKSIEALEAAFSKLRTGRAHPGILSGVMVSYYGSDTPLNQVASINVEDSRTLLV 67 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 +++ MV +V++ I E++LGLNP+ V+R+P+P TEE R + K+A AE+++IS Sbjct: 68 QPFERSMVQAVDKAIREADLGLNPMTA-DVIRVPMPALTEETRRDMQKIARNDAEQTRIS 126 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 VRNIRRD + +K K + SED + +DIQK+TD I IDS E+K+ E+M Sbjct: 127 VRNIRRDMLSDIKDLLKDKEISEDDERRVADDIQKLTDKFIATIDSRLEKKESELMEV 184 >gi|169333879|ref|ZP_02861072.1| hypothetical protein ANASTE_00265 [Anaerofustis stercorihominis DSM 17244] gi|169259444|gb|EDS73410.1| hypothetical protein ANASTE_00265 [Anaerofustis stercorihominis DSM 17244] Length = 185 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 66/165 (40%), Positives = 107/165 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 K++M + L+ ++ LR GR +P MLD + V+ YG+ P+NQ+A+++ EPR L Sbjct: 7 NQAKEKMIKAVENLQSNLNALRAGRANPKMLDRIMVDYYGTPTPVNQMASISAPEPRTLT 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V WD+ + +E+ I S+LGLNP +G+V+R+ +P+ TEERR LVK+A E +K+ Sbjct: 67 VQPWDQSALGLIEKAIMSSDLGLNPSNDGKVIRLVIPQLTEERRKELVKLAQKEGENAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNI 172 +VRNIRR + LK +K G+ +ED + E+++QK+T+ IK + Sbjct: 127 AVRNIRRHTIQTLKDEQKKGELTEDSLKDAEDEMQKLTNDYIKEV 171 >gi|238854749|ref|ZP_04645079.1| ribosome recycling factor [Lactobacillus jensenii 269-3] gi|260663981|ref|ZP_05864834.1| ribosome recycling factor [Lactobacillus jensenii SJ-7A-US] gi|282932860|ref|ZP_06338257.1| ribosome recycling factor [Lactobacillus jensenii 208-1] gi|313472270|ref|ZP_07812762.1| ribosome recycling factor [Lactobacillus jensenii 1153] gi|238832539|gb|EEQ24846.1| ribosome recycling factor [Lactobacillus jensenii 269-3] gi|239529668|gb|EEQ68669.1| ribosome recycling factor [Lactobacillus jensenii 1153] gi|260561867|gb|EEX27836.1| ribosome recycling factor [Lactobacillus jensenii SJ-7A-US] gi|281302895|gb|EFA95100.1| ribosome recycling factor [Lactobacillus jensenii 208-1] Length = 185 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 70/177 (39%), Positives = 114/177 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + K+ M +I+ +K++ +R G + S+L+ VKV+ YG PL Q+++VT+ E R+L Sbjct: 6 IAKAKENMNKSIAVYQKELGNIRAGVANASLLEGVKVDYYGVPTPLTQMSSVTIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK + ++E + S+LGL P +G V+R+ +P+ T ERR + K AE++K Sbjct: 66 LVTPYDKSSLDNIEHALLASDLGLTPANDGNVIRLVIPQLTGERREEIAKQVGKQAEQAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 I++RN+RR+ MD LKK K+G +ED LE D+QK+TD K +D +EK+KEI Sbjct: 126 IAIRNVRREAMDSLKKQEKNGDITEDEQKRLEKDVQKVTDDATKRVDQLADEKRKEI 182 >gi|104774221|ref|YP_619201.1| ribosome recycling factor [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|123077247|sp|Q1G9N9|RRF_LACDA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|103423302|emb|CAI98143.1| Ribosome recycling factor [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|325126006|gb|ADY85336.1| Ribosome recycling factor [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 185 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 70/179 (39%), Positives = 110/179 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + K M +I + ++ T+R G + S+LD V VE YG PL Q+A +T+ EPR+L Sbjct: 6 IAKAKRNMNKSIEVYQSNLATVRAGVANASLLDRVMVEYYGVPTPLVQMAGITIPEPRVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK + +E I S+LGL P +G V+R+ +P+ T ERR + K AE++K Sbjct: 66 MITPYDKTSLNDIEHAILASDLGLTPANDGNVIRLIIPQLTGERRQEIAKEVGKLAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 I+VRN+R++ M LKK K G+ +ED LE ++QK+TD + K ID + K+KEI+ Sbjct: 126 IAVRNVRQEAMKALKKQEKDGEITEDEERRLEKEVQKVTDESTKKIDQMADNKRKEIIQ 184 >gi|326776287|ref|ZP_08235552.1| Ribosome-recycling factor [Streptomyces cf. griseus XylebKG-1] gi|326656620|gb|EGE41466.1| Ribosome-recycling factor [Streptomyces cf. griseus XylebKG-1] Length = 185 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 61/174 (35%), Positives = 103/174 (59%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M + K+D +RTGR P+M + + + YG+ P+NQ+A+ +V E RM VV+ +D Sbjct: 12 KMEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEARMAVVTPFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K + ++E+ I +S+LG+NP +G ++R+ PE T++RR +KVA AE SKIS+R+I Sbjct: 72 KSALRNIEQAIRDSDLGVNPSNDGNIIRVTFPELTQDRRKEYIKVAKTKAEDSKISIRSI 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RR + L K K ++ ED V E ++ T + +D + K+ E++ Sbjct: 132 RRKAKETLDKLVKDKESGEDEVRRAEKELDDTTAKYVAQVDELLKHKEAELLEV 185 >gi|56459950|ref|YP_155231.1| ribosome recycling factor [Idiomarina loihiensis L2TR] gi|60390231|sp|Q5QXS3|RRF_IDILO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|56178960|gb|AAV81682.1| Ribosome recycling factor [Idiomarina loihiensis L2TR] Length = 185 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 79/180 (43%), Positives = 113/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +++ KDRM ++ L+ M +RTGR PS+LD V V YG+ PL Q+AN+T + R L Sbjct: 6 IEDAKDRMEKSVESLRSQMSKVRTGRAHPSILDSVMVNYYGTDTPLKQLANITTEDSRTL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++V+DK A+VE+ I S+LGLNP G V+RIP+P TEERR LVK+ A AE + Sbjct: 66 ALTVFDKSASAAVEKAIINSDLGLNPASAGAVIRIPLPPLTEERRRDLVKIVRAEAENGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I+VRNIRRD +K K + +ED + E +IQK+TD +K ID + K+ ++M Sbjct: 126 IAVRNIRRDANGDIKDLLKEKEITEDEERNAEEEIQKLTDKFVKQIDEALKAKEADLMEI 185 >gi|78185216|ref|YP_377651.1| ribosome recycling factor [Synechococcus sp. CC9902] gi|123580806|sp|Q3AV97|RRF_SYNS9 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|78169510|gb|ABB26607.1| ribosome recycling factor [Synechococcus sp. CC9902] Length = 182 Score = 222 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 60/179 (33%), Positives = 106/179 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++++ M ++ +++ T+RTGR + S+LD + VE YG+ PL +A ++ + + + Sbjct: 4 KDLEASMRKSLEATQRNFNTIRTGRANSSLLDRISVEYYGADTPLKSLATLSTPDSQTIQ 63 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +D +A++E+ I S LG P +G+V+RI VP TEERR K+A YAE+ K+ Sbjct: 64 IQPFDISGLAAIEKAIAMSELGFTPNNDGKVIRINVPPLTEERRKEFCKMASKYAEEGKV 123 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD +D +KK K G SED ++ +QK+ D I ++ +K+ I+ Sbjct: 124 ALRNLRRDAIDKVKKQEKDGDFSEDQSRDEQDSVQKVLDKFIVELEKQLADKEAAILKV 182 >gi|205356536|ref|ZP_03223299.1| ribosome recycling factor [Campylobacter jejuni subsp. jejuni CG8421] gi|205345541|gb|EDZ32181.1| ribosome recycling factor [Campylobacter jejuni subsp. jejuni CG8421] Length = 187 Score = 222 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 65/186 (34%), Positives = 110/186 (59%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ + Q + ++ LKKD TLRTG+V+ +LD + V+ YG+ PLNQVA V Sbjct: 4 LNEIFNKQKTQS--EKSLEALKKDFTTLRTGKVNTHILDHITVDYYGTQTPLNQVATVLA 61 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + + ++ W+K ++ ++E I +N+G+NP +G+ +++ P T E+R VK A A Sbjct: 62 SDASTISITPWEKPLLKTIESAIAAANIGVNPNNDGESVKLFFPPMTREQREENVKQAKA 121 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 EK+K+S+RNIR+D D +KK K SED +++QK+TD+ ID + K+ Sbjct: 122 MGEKAKVSIRNIRKDANDAVKKLEKDKAISEDEAKKAYDEVQKLTDTYTTKIDESVKSKE 181 Query: 181 KEIMHF 186 E++ Sbjct: 182 SELLKV 187 >gi|57237294|ref|YP_178307.1| ribosome recycling factor [Campylobacter jejuni RM1221] gi|86151424|ref|ZP_01069639.1| ribosome recycling factor [Campylobacter jejuni subsp. jejuni 260.94] gi|62900783|sp|Q5HWM8|RRF_CAMJR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|57166098|gb|AAW34877.1| ribosome recycling factor [Campylobacter jejuni RM1221] gi|85841771|gb|EAQ59018.1| ribosome recycling factor [Campylobacter jejuni subsp. jejuni 260.94] gi|315057664|gb|ADT71993.1| Ribosome recycling factor [Campylobacter jejuni subsp. jejuni S3] Length = 185 Score = 222 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 65/186 (34%), Positives = 110/186 (59%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ + Q + ++ LKKD TLRTG+V+ +LD + V+ YG+ PLNQVA V Sbjct: 2 LNEIFNKQKTQS--EKSLEALKKDFTTLRTGKVNTHILDHITVDYYGTQTPLNQVATVLA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + + ++ W+K ++ ++E I +N+G+NP +G+ +++ P T E+R VK A A Sbjct: 60 SDASTISITPWEKPLLKTIESAIAAANIGVNPNNDGESVKLFFPPMTREQREENVKQAKA 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 EK+K+S+RNIR+D D +KK K SED +++QK+TD+ ID + K+ Sbjct: 120 MGEKAKVSIRNIRKDANDAVKKLEKDKAISEDEAKKAYDEVQKLTDTYTTKIDESVKNKE 179 Query: 181 KEIMHF 186 E++ Sbjct: 180 SELLKV 185 >gi|291456894|ref|ZP_06596284.1| ribosome recycling factor [Bifidobacterium breve DSM 20213] gi|291382171|gb|EFE89689.1| ribosome recycling factor [Bifidobacterium breve DSM 20213] Length = 183 Score = 222 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 70/180 (38%), Positives = 110/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + K++M T+ K++ +RTGR +P++L+ + V+ YG+ P+ VA++ V EPR L Sbjct: 4 IDQAKEQMAKTVENTKENFAGIRTGRANPALLNGIVVDYYGAPTPIKAVASIGVPEPRTL 63 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +D A+VE+ I S+LG++P +G V+R+ +PE TE+RR VK+A + AE K Sbjct: 64 SVTPFDASQAAAVEKAIRNSDLGVSPNRDGNVIRLTMPELTEDRRKEYVKLAKSKAEDGK 123 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRR + + KS K G ED L D+ K+T S ID+ + K+KEIM Sbjct: 124 VAVRNIRRKTKETIDKSVKDGDMGEDEGDRLLKDLDKVTKSVTDEIDALLDTKQKEIMEV 183 >gi|239944636|ref|ZP_04696573.1| ribosome recycling factor [Streptomyces roseosporus NRRL 15998] gi|239991100|ref|ZP_04711764.1| ribosome recycling factor [Streptomyces roseosporus NRRL 11379] Length = 186 Score = 222 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 62/174 (35%), Positives = 105/174 (60%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M + K+D +RTGR P+M + + + YG+ P+NQ+A+ +V EPRM VV+ +D Sbjct: 13 KMEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMAVVTPFD 72 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K + ++E+ I +S+LG+NP +G ++R+ PE T++RR +KVA AE SKIS+R+I Sbjct: 73 KTALRNIEQAIRDSDLGVNPSNDGNIIRVTFPELTQDRRKEYIKVAKTKAEDSKISIRSI 132 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RR ++L K K ++ ED V E ++ T + +D + K+ E++ Sbjct: 133 RRKAKENLDKLVKDKESGEDEVRRAEKELDDTTAKYVAQVDELLKHKEAELLEV 186 >gi|150016075|ref|YP_001308329.1| ribosome recycling factor [Clostridium beijerinckii NCIMB 8052] gi|189044050|sp|A6LSP3|RRF_CLOB8 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|149902540|gb|ABR33373.1| ribosome recycling factor [Clostridium beijerinckii NCIMB 8052] Length = 185 Score = 222 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 77/180 (42%), Positives = 122/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +QN +++M TIS LK D+ T++ GR +P+MLD + VE YGS PL+QVANV+ EPR+L Sbjct: 6 IQNAEEKMKKTISVLKSDLSTMKAGRANPTMLDRIHVEYYGSMCPLSQVANVSAPEPRVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ W+K ++ +E+ I +S+LGLNP +G ++R+ +PE TEE R LVK E++K Sbjct: 66 MITPWEKPLLKEIEKAILKSDLGLNPSSDGSIIRLVIPELTEETRKTLVKNVKKTGEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++R+IR+ D +K +K SED V E+++QK TD+ +K IDS K+KE++ Sbjct: 126 VAIRSIRKTANDKIKALKKDEDLSEDQVKKAEDEVQKKTDAVVKEIDSIIAAKEKEVLSV 185 >gi|55820525|ref|YP_138967.1| ribosome recycling factor [Streptococcus thermophilus LMG 18311] gi|55822414|ref|YP_140855.1| ribosome recycling factor [Streptococcus thermophilus CNRZ1066] gi|62900786|sp|Q5M140|RRF_STRT1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|62900787|sp|Q5M5M9|RRF_STRT2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|55736510|gb|AAV60152.1| ribosome recycling factor [Streptococcus thermophilus LMG 18311] gi|55738399|gb|AAV62040.1| ribosome recycling factor [Streptococcus thermophilus CNRZ1066] Length = 185 Score = 222 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 78/180 (43%), Positives = 115/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+R T L ++ +R GR + S+LD + VE YG+ PLNQ+A++TV E R+L Sbjct: 6 IEKAKERFAHTHESLAREFGAIRAGRANASLLDRITVEYYGAPTPLNQLASITVPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +DK +A +ER I+ES+LG+NP +G V+R+ +P TEE R L K E +K Sbjct: 66 LISPFDKGSIADIERAINESDLGINPANDGSVIRLVIPALTEETRKELAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIRRD MD KK K + +ED + +LE DIQK TD + IDS EK+KE++ Sbjct: 126 IAIRNIRRDAMDEAKKQEKEKEITEDQLKTLEKDIQKATDDAVNKIDSMIAEKEKELLTV 185 >gi|123968112|ref|YP_001008970.1| ribosome recycling factor [Prochlorococcus marinus str. AS9601] gi|166230817|sp|A2BQ02|RRF_PROMS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|123198222|gb|ABM69863.1| Ribosome recycling factor [Prochlorococcus marinus str. AS9601] Length = 182 Score = 222 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 68/179 (37%), Positives = 111/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + I++ M +I +++ T+RTGR + S+LD V VE YG+ P+ +A ++ ++ + + Sbjct: 4 KEIQENMNKSIEATQRNFNTIRTGRANASLLDRVSVEYYGAETPIKSLATISTVDSQTIS 63 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +D + ++E+ I S+LG+ P +G+V+RI VP TEERR K+A YAE+ K+ Sbjct: 64 IQPFDISCLQAIEKSISMSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGKV 123 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD +D KK K G S D +++IQKITD I I++ EK+KEI+ Sbjct: 124 ALRNIRRDAVDKEKKDEKDGLISIDESRDNQSEIQKITDKYIALIETKLSEKEKEILKV 182 >gi|325067054|ref|ZP_08125727.1| ribosome recycling factor [Actinomyces oris K20] gi|326771757|ref|ZP_08231042.1| ribosome recycling factor [Actinomyces viscosus C505] gi|326637890|gb|EGE38791.1| ribosome recycling factor [Actinomyces viscosus C505] Length = 185 Score = 222 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 63/180 (35%), Positives = 108/180 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + +D+M + K ++ T+RTGR +PSM + + V+ YG+ PL Q+A++T+ E R + Sbjct: 6 MLEAEDKMDKALQAAKSELATIRTGRANPSMFNGIVVDYYGAPTPLQQLASLTIPEARTV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +VS +D+ + + I ES+LG+NP +G V+R+ +P TEERR VK+A + AE S+ Sbjct: 66 LVSPFDRSAMKDIVTAIRESDLGVNPTDDGTVIRVTLPALTEERRKDYVKLARSRAEDSR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 + VR IR L+ +K G+A ED V E+++ +T ++ ID+ K+ E++ Sbjct: 126 VQVRGIRGKAKKELEAIKKDGEAGEDDVKRAEHELDGLTKRFVEQIDAALSAKEAELLEV 185 >gi|307747174|gb|ADN90444.1| Ribosome-recycling factor [Campylobacter jejuni subsp. jejuni M1] Length = 187 Score = 222 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 65/186 (34%), Positives = 110/186 (59%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ + Q + ++ LKKD TLRTG+V+ +LD + V+ YG+ PLNQVA V Sbjct: 4 LNEIFNKQKTQS--EKSLEALKKDFTTLRTGKVNTHILDHITVDYYGTQTPLNQVATVLA 61 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + + ++ W+K ++ ++E I +N+G+NP +G+ +++ P T E+R VK A A Sbjct: 62 SDASTINITPWEKPLLKTIESAIAAANIGVNPNNDGESVKLFFPPMTREQREENVKQAKA 121 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 EK+K+S+RNIR+D D +KK K SED +++QK+TD+ ID + K+ Sbjct: 122 MGEKAKVSIRNIRKDANDAVKKLEKDKAISEDEAKKAYDEVQKLTDTYTTKIDESVKSKE 181 Query: 181 KEIMHF 186 E++ Sbjct: 182 SELLKV 187 >gi|116627334|ref|YP_819953.1| ribosome recycling factor [Streptococcus thermophilus LMD-9] gi|122268064|sp|Q03M15|RRF_STRTD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|116100611|gb|ABJ65757.1| ribosome recycling factor [Streptococcus thermophilus LMD-9] gi|312277842|gb|ADQ62499.1| Ribosome recycling factor [Streptococcus thermophilus ND03] Length = 185 Score = 222 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 78/180 (43%), Positives = 115/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+R T L ++ +R GR + S+LD + VE YG+ PLNQ+A++TV E R+L Sbjct: 6 IEKAKERFAHTHESLAREFGAIRAGRANASLLDRITVEYYGAPTPLNQLASITVPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +DK +A +ER I+ES+LG+NP +G V+R+ +P TEE R L K E +K Sbjct: 66 LISPFDKGSIADIERAINESDLGINPANDGSVIRLVIPALTEETRKELAKEVKKVGENAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIRRD MD KK K + +ED + +LE DIQK TD + IDS EK+KE++ Sbjct: 126 IAIRNIRRDAMDEAKKQEKEKEITEDQLKTLEKDIQKATDDAVNKIDSMIAEKEKELLTV 185 >gi|291448100|ref|ZP_06587490.1| ribosome recycling factor [Streptomyces roseosporus NRRL 15998] gi|291351047|gb|EFE77951.1| ribosome recycling factor [Streptomyces roseosporus NRRL 15998] Length = 185 Score = 222 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 62/174 (35%), Positives = 105/174 (60%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M + K+D +RTGR P+M + + + YG+ P+NQ+A+ +V EPRM VV+ +D Sbjct: 12 KMEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMAVVTPFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 K + ++E+ I +S+LG+NP +G ++R+ PE T++RR +KVA AE SKIS+R+I Sbjct: 72 KTALRNIEQAIRDSDLGVNPSNDGNIIRVTFPELTQDRRKEYIKVAKTKAEDSKISIRSI 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RR ++L K K ++ ED V E ++ T + +D + K+ E++ Sbjct: 132 RRKAKENLDKLVKDKESGEDEVRRAEKELDDTTAKYVAQVDELLKHKEAELLEV 185 >gi|34397824|gb|AAQ66885.1| ribosome recycling factor [Porphyromonas gingivalis W83] Length = 173 Score = 222 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 68/173 (39%), Positives = 106/173 (61%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M + +L + + +R G+ SP +LD + V YG+ PL QVA++ + + +VV+ W++ Sbjct: 1 MEKAVEYLDEQLSHVRAGKASPKLLDGIMVMYYGNATPLTQVASINTPDAKTIVVTPWER 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 ++ +E+ I +S LG+ P G+++R+ +P TEERR LVK AE +K+SVRN R Sbjct: 61 SLIKDIEKAIMDSPLGITPENNGELIRLGLPPLTEERRRQLVKQTKGDAEDAKVSVRNAR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RD +D +KKS K+ ED+ E ++QK+ D IK ID F EK+KEIM Sbjct: 121 RDAIDAIKKSVKTDGTPEDVAKDAEAEMQKVHDRYIKKIDELFAEKEKEIMTV 173 >gi|228473766|ref|ZP_04058511.1| ribosome recycling factor [Capnocytophaga gingivalis ATCC 33624] gi|228274787|gb|EEK13610.1| ribosome recycling factor [Capnocytophaga gingivalis ATCC 33624] Length = 184 Score = 222 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 75/188 (39%), Positives = 117/188 (62%), Gaps = 6/188 (3%) Query: 1 MNQVID--LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 MN+ ID L++ K+ M +++ L+K ++ +R G+ SP ML V V+ YGS PL+QVANV Sbjct: 1 MNEEIDFILESTKEAMQGSLNHLEKSLLNIRAGKASPQMLGSVYVDYYGSQTPLSQVANV 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 + R + + W+K M++++E+ I +NLG NP+ G+ + I VP TEERR LVK A Sbjct: 61 NTPDSRTISIQPWEKNMLSTIEKAIMVANLGFNPMNNGETIIISVPPLTEERRKELVKQA 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 +E++KI VRN R++ +KK+ +AS+D+ E +QK+TD IK ID + Sbjct: 121 KGESEEAKIGVRNARQEANKDIKKT----EASDDVKKDAEERVQKLTDKYIKQIDEVLAK 176 Query: 179 KKKEIMHF 186 K+ EI+ Sbjct: 177 KEAEILKV 184 >gi|312892397|ref|ZP_07751892.1| ribosome recycling factor [Mucilaginibacter paludis DSM 18603] gi|311295181|gb|EFQ72355.1| ribosome recycling factor [Mucilaginibacter paludis DSM 18603] Length = 187 Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats. Identities = 79/188 (42%), Positives = 112/188 (59%), Gaps = 3/188 (1%) Query: 1 MNQVID--LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 M+++I L + K M I + + +R G+ SP+MLD V VE YG+ + QVA+V Sbjct: 1 MSELIKKQLTDAKALMEKAIEHTDSEFLKIRAGKASPAMLDGVMVEYYGTPTIITQVASV 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 + R LVV W+K ++ +ER I E+NLG NP +G V+RI VP TEERR LVK Sbjct: 61 NSPDARTLVVQPWEKTLLGPIERAIMEANLGFNPQNDGIVIRINVPPLTEERRRDLVKRV 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 A AE KI++RNIR+D + +KK K+ SED + E D+QK+ D+ I ID + Sbjct: 121 KAEAENGKIALRNIRKDANEKIKKL-KTESVSEDEIKVGEADVQKLVDAYIIKIDQLTDV 179 Query: 179 KKKEIMHF 186 K+K+IM Sbjct: 180 KEKDIMTV 187 >gi|269219617|ref|ZP_06163471.1| ribosome recycling factor [Actinomyces sp. oral taxon 848 str. F0332] gi|269210859|gb|EEZ77199.1| ribosome recycling factor [Actinomyces sp. oral taxon 848 str. F0332] Length = 185 Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats. Identities = 57/180 (31%), Positives = 109/180 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M T+ + + +R+GR + +M + + V+ YG+ PL Q+ + + E R + Sbjct: 6 LLEAEEKMEKTVEVARNEFSGIRSGRANAAMFNAILVDYYGAPTPLQQLGTIAIPEARTV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +D+ +AS+++ + ES+LG+NP +G ++R+ +P TEERR VK+A AE+++ Sbjct: 66 LITPFDRSAMASIDKALRESDLGVNPTDDGNLIRVVLPALTEERRRDYVKLARNKAEEAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VR IRR + L K +K G+A ED V E + +T ++ +D E K+KE++ Sbjct: 126 VAVRGIRRKAKEALDKIKKDGEAGEDDVKRAEEKLDGLTKRHVEQVDKVLEGKEKELLEV 185 >gi|157412937|ref|YP_001483803.1| ribosome recycling factor [Prochlorococcus marinus str. MIT 9215] gi|166991558|sp|A8G3N6|RRF_PROM2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|157387512|gb|ABV50217.1| Ribosome recycling factor [Prochlorococcus marinus str. MIT 9215] Length = 182 Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats. Identities = 67/179 (37%), Positives = 111/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + I++ M +I +++ T+RTGR + S+LD V V+ YG+ P+ +A ++ ++ + + Sbjct: 4 KEIQENMNKSIEATQRNFNTIRTGRANASLLDRVSVDYYGAETPIKSLATISTIDSQTIS 63 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +D + ++E+ I S+LG+ P +G+V+RI VP TEERR K+A YAE+ K+ Sbjct: 64 IQPFDISCLQAIEKSISMSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGKV 123 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD +D KK K G S D +++IQKITD I I++ EK+KEI+ Sbjct: 124 ALRNIRRDAVDKEKKDEKDGLISIDESRDNQSEIQKITDKYIALIETKLSEKEKEILKV 182 >gi|223937597|ref|ZP_03629500.1| ribosome recycling factor [bacterium Ellin514] gi|223893760|gb|EEF60218.1| ribosome recycling factor [bacterium Ellin514] Length = 186 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 72/180 (40%), Positives = 117/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M T ++ + +RTG+ SPS+++ + VE YGS + + ++A +T EPRML Sbjct: 7 LLETEEKMIKTEEVVQHEFSGVRTGKASPSLVENILVEVYGSQMRIRELAGITTPEPRML 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WD V +E+ I +SNLGLNP V+ + +RI +P+ ++ERR +KV AE + Sbjct: 67 LIQPWDAGTVHPIEKAIQKSNLGLNPAVDKKFIRIVLPDLSQERRQEFIKVVKKMAEDGR 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++R++RRDGM+ LKK K+G +ED+V E +IQK+TDS I ID +K+KEI+ Sbjct: 127 VAIRHVRRDGMEALKKEEKAGGVTEDLVEGAEKEIQKLTDSYIAKIDGHLAQKEKEILTV 186 >gi|220927898|ref|YP_002504807.1| ribosome recycling factor [Clostridium cellulolyticum H10] gi|219998226|gb|ACL74827.1| ribosome recycling factor [Clostridium cellulolyticum H10] Length = 185 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 71/179 (39%), Positives = 118/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + I+++M TI+ L+ ++ +R GR +P++LD + ++ YG+ P+ QVA V++ E R+++ Sbjct: 7 KPIEEKMKKTINVLRDNLAGIRAGRANPAILDKLTIDYYGAPTPIQQVATVSIPEARVIL 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + W+ +++ +E+ I +S++G+NP +G+VLR+ P TEERR L K A E+SKI Sbjct: 67 IQPWEAKLLKDIEKEIQKSDIGINPNNDGKVLRLVFPALTEERRRELTKQAKKEGEESKI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++R+IRRD ++ +K +KSG+ +ED + E DIQ ITD I ID E K KEIM Sbjct: 127 AIRSIRRDSIETMKAKKKSGEITEDDLKDAEKDIQNITDRYIAEIDRVIEAKDKEIMEV 185 >gi|260060696|ref|YP_003193776.1| ribosome recycling factor [Robiginitalea biformata HTCC2501] gi|88784826|gb|EAR15995.1| ribosome recycling factor [Robiginitalea biformata HTCC2501] Length = 184 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 78/188 (41%), Positives = 115/188 (61%), Gaps = 6/188 (3%) Query: 1 MNQVID--LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 MN+ I L + K+ M + IS L+K+++ +R GR SPSML V V+ YGS PLNQ++NV Sbjct: 1 MNEDIQFILDSAKENMDNAISHLEKELVKIRAGRASPSMLSSVMVDYYGSQTPLNQMSNV 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 + R + V W+K M+ ++E I +NLG NP+ G+++ I VP TEERR LVK A Sbjct: 61 NTPDARTISVQPWEKAMIPNIETAITNANLGFNPMNNGEMVIINVPPLTEERRKQLVKQA 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 A AE++K+S+R R+D +K SED+ + E DIQ++TD+ + +D E Sbjct: 121 KAEAEEAKVSIRAARQDANKEIKAL----DISEDLEQNAEIDIQELTDTYTERVDGILEH 176 Query: 179 KKKEIMHF 186 K+ EIM Sbjct: 177 KEAEIMKV 184 >gi|311748532|ref|ZP_07722317.1| ribosome recycling factor [Algoriphagus sp. PR1] gi|126577048|gb|EAZ81296.1| ribosome recycling factor [Algoriphagus sp. PR1] Length = 186 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 70/187 (37%), Positives = 111/187 (59%), Gaps = 2/187 (1%) Query: 1 MNQV-IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVT 59 M ++ + L K+ M + +++ +R G+ P++LD + V+ YG+ PLNQVA+V+ Sbjct: 1 MEEIELFLDEAKELMQKAVDHTAAELLKIRAGKAMPNLLDGIMVQYYGAPTPLNQVASVS 60 Query: 60 VLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 + R L + W+K ++ +E+ I S+LGL P G+++ + +P TEERR+ LVK A Sbjct: 61 TPDARTLSIKPWEKGLIPDIEKAIINSDLGLAPQNNGELVILTIPALTEERRINLVKQAK 120 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 E KISVR +R+D D LKK +K G ASED V E+ +QK+TD +D E+K Sbjct: 121 HECENGKISVRTVRKDTNDSLKKLQKDG-ASEDEVKRAEDVVQKLTDQYSSKLDDLLEKK 179 Query: 180 KKEIMHF 186 + +IM Sbjct: 180 EADIMKV 186 >gi|302537209|ref|ZP_07289551.1| ribosome recycling factor [Streptomyces sp. C] gi|302446104|gb|EFL17920.1| ribosome recycling factor [Streptomyces sp. C] Length = 185 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 59/174 (33%), Positives = 103/174 (59%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M + K+D +RTGR P+M + + + YG+ P+NQ+A+ V EPRM +V+ +D Sbjct: 12 KMEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGAITPINQLASFAVPEPRMAIVTPFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + ++E+ I +S+LG+NP +G+++R+ PE T++RR +KVA AE S++S+R++ Sbjct: 72 ASALRNIEQAIRDSDLGVNPSNDGRIIRVTFPELTQDRRKEFIKVAKTKAEDSRVSIRSV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RR D L K K +A ED V E ++ T + +D + K+ E++ Sbjct: 132 RRKAKDALDKLVKDKEAGEDEVRRAEKELDDTTAKYVAQVDELLKHKESELLEV 185 >gi|308234682|ref|ZP_07665419.1| ribosome recycling factor [Gardnerella vaginalis ATCC 14018] gi|311114694|ref|YP_003985915.1| ribosome recycling factor [Gardnerella vaginalis ATCC 14019] gi|310946188|gb|ADP38892.1| ribosome recycling factor [Gardnerella vaginalis ATCC 14019] Length = 184 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 68/186 (36%), Positives = 116/186 (62%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M +ID ++M ++ K++ M +RTGR +P++L+ + V+ YG+ P+ VA++ V Sbjct: 1 MPAIID--QALEQMNKSVEATKENFMGIRTGRANPALLNGIMVDYYGAPTPIKAVASIGV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPR L V+ +D +VE+ I +S+LG++P +G V+R+ +PE TE+RR VK+A Sbjct: 59 PEPRTLSVTPFDASQANAVEKAIRDSDLGVSPNRDGNVIRVTMPELTEDRRKEYVKLAKT 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE+ K++VRNIRR +++ KS K G+ ED L+ ++ K+T ++D+ + K+ Sbjct: 119 KAEEGKVAVRNIRRKTKENIDKSVKDGEIGEDEGERLQKELDKVTKQVTDSLDALLDGKQ 178 Query: 181 KEIMHF 186 KEIM Sbjct: 179 KEIMEV 184 >gi|224438526|ref|ZP_03659446.1| ribosome recycling factor [Helicobacter cinaedi CCUG 18818] gi|313144953|ref|ZP_07807146.1| ribosome recycling factor [Helicobacter cinaedi CCUG 18818] gi|313129984|gb|EFR47601.1| ribosome recycling factor [Helicobacter cinaedi CCUG 18818] Length = 185 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 63/186 (33%), Positives = 113/186 (60%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N + + N K M TI L++D TLR+G+VS S+LD ++++ YG+ PLNQV +V Sbjct: 2 LNDIYN--NAKSHMEKTIESLRRDFSTLRSGKVSISILDNIRIDYYGTPTPLNQVGSVIA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + ++++ W+K ++ +E+ I E+N+G+NP + + +++ P T+E+R + K A + Sbjct: 60 QDATTIIITPWEKPLLKDIEKAIQEANIGVNPNSDSECVKLFFPPMTQEQRKEIAKQAKS 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 EK+K+++RNIR+D + +KK K +ED ++IQK TD +K D K+ Sbjct: 120 MGEKAKVAIRNIRQDSNNGIKKLEKDKDITEDEGKKGLDEIQKYTDEFVKKCDDMVRHKE 179 Query: 181 KEIMHF 186 +E+M Sbjct: 180 EEVMKV 185 >gi|291278553|ref|YP_003495388.1| ribosome recycling factor Frr [Deferribacter desulfuricans SSM1] gi|290753255|dbj|BAI79632.1| ribosome recycling factor Frr [Deferribacter desulfuricans SSM1] Length = 185 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 66/186 (35%), Positives = 117/186 (62%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ + +K +M ++++ K+++ +RTGR S ++ + +KV+ YG+ P+ QVA + V Sbjct: 2 INEIF--EEVKSKMEKSVAYYKEELKGVRTGRASAALFENIKVDYYGTPTPIPQVATIQV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 +PR++ + W+ MV +E+ I S +G NP +G+++R+P+P TEERR L+K+ + Sbjct: 60 PDPRLVTIQPWEPNMVPVIEKAIMNSGMGFNPSNDGKMIRVPIPPLTEERRKELMKLVNK 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE++++ +RN RR G D +KK K + SED IQ++T+ IK ID +K+ Sbjct: 120 MAEEARVVIRNERRYGNDKIKKLEKEKEISEDEAKKALEKIQELTNEYIKKIDEITAKKE 179 Query: 181 KEIMHF 186 KEIM Sbjct: 180 KEIMEL 185 >gi|302874652|ref|YP_003843285.1| ribosome recycling factor [Clostridium cellulovorans 743B] gi|307690735|ref|ZP_07633181.1| ribosome recycling factor [Clostridium cellulovorans 743B] gi|302577509|gb|ADL51521.1| ribosome recycling factor [Clostridium cellulovorans 743B] Length = 185 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 76/180 (42%), Positives = 123/180 (68%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + N +++M T++ LKKD+ TL+ G+ +P+MLD ++VE YG+ P+NQVAN++ EPR+L Sbjct: 6 ISNAEEKMKKTVTVLKKDLNTLKAGKANPTMLDRIEVEYYGTMTPINQVANISAPEPRIL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WDK + ++E+ I S+LG+NP +G V+R+ VPE TEE R + K + E +K Sbjct: 66 LIQPWDKGSLKAIEKAILISDLGINPNSDGNVIRLIVPELTEETRRDITKKVKKFGEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VR+IRRD D +K +K +ED + S E+++QK TD+ +K IDS +K+KE+M Sbjct: 126 VAVRSIRRDANDKIKNLKKENTITEDEMKSAEDNVQKKTDAFVKEIDSIISDKEKEVMSL 185 >gi|157825336|ref|YP_001493056.1| ribosome recycling factor [Rickettsia akari str. Hartford] gi|166231216|sp|A8GMC3|RRF_RICAH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|157799294|gb|ABV74548.1| ribosome releasing factor [Rickettsia akari str. Hartford] Length = 186 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 81/177 (45%), Positives = 120/177 (67%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 ++++M + L ++ LRTGR S ++LD V VEAYGS + L+QVA+++ + R + V Sbjct: 10 LQEKMDKALKVLDHELKGLRTGRASVNLLDSVTVEAYGSKMLLSQVASLSTPDARTINVQ 69 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 VWDK MV+SVE+GI +NLGL P +GQ++R+P+P TEERR LVK+AH Y E +KIS+ Sbjct: 70 VWDKSMVSSVEKGITIANLGLTPATDGQLIRLPIPALTEERRKELVKLAHKYGEDAKISL 129 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RNIRRDG + LKK K ++D +L +QK+TD +DS ++K+++IM Sbjct: 130 RNIRRDGNEELKKLEKDNIIAKDEHHNLSEQVQKLTDEYSSKVDSAIKQKEQDIMTV 186 >gi|126695885|ref|YP_001090771.1| ribosome recycling factor [Prochlorococcus marinus str. MIT 9301] gi|126542928|gb|ABO17170.1| Ribosome recycling factor [Prochlorococcus marinus str. MIT 9301] Length = 173 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 67/173 (38%), Positives = 107/173 (61%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M +I +++ T+RTGR + S+LD V VE YG+ P+ +A ++ ++ + + + +D Sbjct: 1 MNKSIEATQRNFNTIRTGRANASLLDRVSVEYYGAETPIKSLATISTVDSQTISIQPFDI 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 + ++E+ I S+LG+ P +G+V+RI VP TEERR K+A YAE+ K+++RNIR Sbjct: 61 SCLQAIEKSISMSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGKVALRNIR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RD +D KK K G S D +++IQKITD I I++ EK+KEI+ Sbjct: 121 RDAVDKEKKDEKDGLISIDESRDNQSEIQKITDKYIALIETKLSEKEKEILKV 173 >gi|28210950|ref|NP_781894.1| ribosome recycling factor [Clostridium tetani E88] gi|34924948|sp|Q895K9|RRF_CLOTE RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|28203389|gb|AAO35831.1| ribosome recycling factor [Clostridium tetani E88] Length = 183 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 74/180 (41%), Positives = 117/180 (65%), Gaps = 2/180 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + +D+M + LKKD+ +L+ GR +P+MLD ++ E YG+ PL+Q+AN++V E R+L Sbjct: 6 MNTAEDKMSKALLALKKDLASLKAGRANPAMLDKIEAEYYGTMTPLSQLANISVPEARIL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK + ++E+ I S+LGLNP +G ++R+ +PE TEE R +VK Y E +K Sbjct: 66 QIQPWDKSSLKAIEKAILVSDLGLNPNNDGTIIRLIIPELTEETRRNIVKTVKKYGEDTK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++R++RRDG D +K + SED + E +IQKITD+ +K +D + K+KEIM Sbjct: 126 IAIRSVRRDGNDKIKDLKSD--MSEDDIKKAEEEIQKITDNYVKKVDEMIDIKEKEIMSI 183 >gi|208780540|ref|ZP_03247879.1| ribosome recycling factor [Francisella novicida FTG] gi|208743515|gb|EDZ89820.1| ribosome recycling factor [Francisella novicida FTG] Length = 185 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 68/180 (37%), Positives = 108/180 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ ++RM ++ L D+ +RTGR P +L V ++ YG + Q AN+TVL+ R L Sbjct: 6 LKDAENRMKKSLEVLADDLAKIRTGRAHPDLLAHVTIDYYGVETTITQAANITVLDARTL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ W+K + + +E+ I S+LGLNP G LR+P+P EERR LVK+ + E + Sbjct: 66 GITPWEKGLSSKIEKAILTSDLGLNPTNLGDSLRVPMPALNEERRKELVKLVKSETEAGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+RNIRRD +K+ K + +ED E+DIQKITD I D+ +K++++M Sbjct: 126 VSIRNIRRDANGDIKELLKEKEITEDQAKKAEDDIQKITDKMIAQADALAAKKEQDLMAV 185 >gi|229829209|ref|ZP_04455278.1| hypothetical protein GCWU000342_01296 [Shuttleworthia satelles DSM 14600] gi|229792372|gb|EEP28486.1| hypothetical protein GCWU000342_01296 [Shuttleworthia satelles DSM 14600] Length = 189 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 70/178 (39%), Positives = 117/178 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M +++ L + +++R GR +P +LD ++VE YG+ PL QVANV+V E RM+ Sbjct: 10 LNPYEEKMKKSVNALLAEYVSIRAGRANPHILDKIEVEYYGAPTPLQQVANVSVPEARMI 69 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + W+ ++ +E+ I+ S++G++P +G+ +R+ PE TE+RR LVK E +K Sbjct: 70 QIQPWESSLLKEIEKAINMSDVGIHPTNDGKTIRLVFPELTEDRRKELVKDVKKKGENAK 129 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++RNIRRD MD KK +KS SED +A LE+ QK+TD +K +D ++K +E+M Sbjct: 130 VAIRNIRRDAMDEFKKLKKSEDMSEDAIADLEDQAQKLTDRYVKILDQEIDKKTQELM 187 >gi|228470918|ref|ZP_04055763.1| ribosome recycling factor [Porphyromonas uenonis 60-3] gi|228307315|gb|EEK16329.1| ribosome recycling factor [Porphyromonas uenonis 60-3] Length = 186 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 75/180 (41%), Positives = 115/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ + M I FL+ + +R G+ +P +LD + VEAYG+ +PLNQVA VTV + R L Sbjct: 7 IKPAEQSMLKAIEFLQDKLDRIRAGKANPVLLDDITVEAYGAPMPLNQVATVTVPDARTL 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WDK+++ +E+GI +S+LG+ P G+++RI +P TEERR LVK + A +E++K Sbjct: 67 AITPWDKKLIKDIEKGILDSSLGITPTNNGEMIRITMPPLTEERRKELVKQSKAESEEAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 IS+RN RRD +D KK+ K+ ED + END QK+ D I ++ K+KEIM Sbjct: 127 ISIRNARRDAIDAAKKAVKAEDLPEDTIKQTENDAQKLHDKYIARVEEALAAKEKEIMTI 186 >gi|226954086|ref|ZP_03824550.1| ribosome releasing factor [Acinetobacter sp. ATCC 27244] gi|226835127|gb|EEH67510.1| ribosome releasing factor [Acinetobacter sp. ATCC 27244] Length = 184 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 71/179 (39%), Positives = 109/179 (60%), Gaps = 1/179 (0%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ +DRM ++ L+ +RTGR PS+L+ V V YGS VPLNQVAN+ + + R L+ Sbjct: 7 KDAEDRMNKSLDSLEHGFAKVRTGRAHPSILNGVMVPYYGSDVPLNQVANIGLEDSRTLL 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +++ MV+++++ I E+ LGLNPI +R+P+ TEE R + KVA AE +K+ Sbjct: 67 VQPFERSMVSAIDKAIREAGLGLNPITA-DAIRVPMAALTEETRRDMQKVARNEAENAKV 125 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RNIRRD + +K K + SED ++IQKITD + +D K+ E+M Sbjct: 126 SIRNIRRDVLGDIKALLKEKEISEDDDRRASDEIQKITDKFVAEVDKRLAAKEAELMKV 184 >gi|256847041|ref|ZP_05552487.1| ribosome recycling factor [Lactobacillus coleohominis 101-4-CHN] gi|256715705|gb|EEU30680.1| ribosome recycling factor [Lactobacillus coleohominis 101-4-CHN] Length = 186 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 78/178 (43%), Positives = 122/178 (68%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L N K++M + LK+ + +R GR + S+L+ VKV+ YG+ PLNQ+A++TV E R L Sbjct: 7 LANAKEKMAKSGEALKRTLADIRAGRANASILNPVKVDYYGALTPLNQMASITVPEARQL 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +VS +DK + +ER I+E++LGL P +G+ +RI +P+ TEERR LVK A E +K Sbjct: 67 LVSPYDKSTLKDIERAIYEADLGLTPQNDGEAIRIMIPQLTEERRKELVKDVKAELENAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++VRN+RR+ MD LKK K G ++D +LE+ +QK TD+ IKN+++ ++K+ E+M Sbjct: 127 VAVRNVRREAMDDLKKGNKDGDFNDDEFHNLEDQVQKETDAGIKNLEAIAKDKEDELM 184 >gi|229815412|ref|ZP_04445744.1| hypothetical protein COLINT_02460 [Collinsella intestinalis DSM 13280] gi|229808945|gb|EEP44715.1| hypothetical protein COLINT_02460 [Collinsella intestinalis DSM 13280] Length = 177 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 64/180 (35%), Positives = 103/180 (57%), Gaps = 3/180 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + +I++ M I LK + +RTGR + ++L + V+ YG P+ QVA + V E ML Sbjct: 1 MSDIRENMDKAIDSLKHNFAKVRTGRANANVLSDITVDYYGVATPITQVAAIKVPEAHML 60 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK +V ++ + + S+LG+ P +G V+R+P P TEERR LVK AE +K Sbjct: 61 VIEPWDKALVNAIVKAVTASDLGITPNSDGIVVRLPFPAPTEERRRELVKECRDLAEHAK 120 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIRRD + K + + +ED V + +QK TD + ++ + K+ E+M Sbjct: 121 IAIRNIRRDANN---KLERDEELTEDDVRREQAKVQKATDEYVARVEELLKAKEAEVMEI 177 >gi|330964144|gb|EGH64404.1| ribosome recycling factor [Pseudomonas syringae pv. actinidiae str. M302091] Length = 185 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 67/179 (37%), Positives = 104/179 (58%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM ++ L +RTG+ PS+L V V YG+ PL+QVANVTV + R L Sbjct: 7 KDAQTRMQKSLESLTHAFTRIRTGKAHPSILGGVMVPYYGADTPLSQVANVTVKDSRTLQ 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +++ M+A+V++ I S LG NP G++L I +P TEE R K A AE +++ Sbjct: 67 VVAFERNMLAAVDKAIQSSGLGFNPTNLGELLLISMPALTEETRKGFTKQARDAAEDARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD + LK K + SED +D+QK+TD + I+ ++K+ ++M Sbjct: 127 AVRNIRRDALSQLKDLVKDKEISEDEERRAADDVQKLTDKFVAEIEVAVKQKEADLMAV 185 >gi|294650307|ref|ZP_06727675.1| ribosome recycling factor [Acinetobacter haemolyticus ATCC 19194] gi|292823837|gb|EFF82672.1| ribosome recycling factor [Acinetobacter haemolyticus ATCC 19194] Length = 184 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 70/179 (39%), Positives = 109/179 (60%), Gaps = 1/179 (0%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ +DRM ++ L+ +RTGR PS+L+ V V YGS VPLNQVAN+ + + R L+ Sbjct: 7 KDAEDRMNKSLDSLEHGFAKVRTGRAHPSILNGVMVPYYGSDVPLNQVANIGLEDSRTLL 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +++ MV+++++ I E+ LGLNPI +R+P+ TEE R + KVA AE +K+ Sbjct: 67 VQPFERSMVSAIDKAIREAGLGLNPITA-DAIRVPMAALTEETRRDMQKVARNEAENAKV 125 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD + +K K + SED ++IQKITD + +D K+ E+M Sbjct: 126 AIRNIRRDVLGDIKALLKEKEISEDDDRRASDEIQKITDKFVAEVDKRLAAKEAELMKV 184 >gi|254526487|ref|ZP_05138539.1| ribosome recycling factor [Prochlorococcus marinus str. MIT 9202] gi|221537911|gb|EEE40364.1| ribosome recycling factor [Prochlorococcus marinus str. MIT 9202] Length = 182 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 68/179 (37%), Positives = 111/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + I++ M +I +++ T+RTGR + S+LD V VE YG+ P+ +A ++ ++ + + Sbjct: 4 KEIQENMNKSIEATQRNFNTIRTGRANASLLDRVSVEYYGAETPIKSLATISTIDSQTIS 63 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +D + ++E+ I S+LG+ P +G+V+RI VP TEERR K+A YAE+ K+ Sbjct: 64 IQPFDISCLQAIEKSISMSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGKV 123 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD +D KK K G S D +++IQKITD I I++ EK+KEI+ Sbjct: 124 ALRNIRRDAVDKEKKDEKDGLISIDESRDNQSEIQKITDKYIALIETKLSEKEKEILKV 182 >gi|188588017|ref|YP_001920606.1| ribosome recycling factor [Clostridium botulinum E3 str. Alaska E43] gi|251779568|ref|ZP_04822488.1| ribosome recycling factor [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|238689676|sp|B2V4F7|RRF_CLOBA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|188498298|gb|ACD51434.1| ribosome recycling factor [Clostridium botulinum E3 str. Alaska E43] gi|243083883|gb|EES49773.1| ribosome recycling factor [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 185 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 76/180 (42%), Positives = 125/180 (69%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++N +++M T++ LK ++ T++ GR +PSMLD ++++ YGS PL+Q AN++ EPR+L Sbjct: 6 IKNAEEKMQKTVTVLKSELGTMKAGRANPSMLDKIQIDYYGSMCPLSQAANISSPEPRVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ W+K+++ +E+ I +S+LGLNP +G ++R+ +PE TEE R LVK E+SK Sbjct: 66 MITPWEKQLLKEIEKAILKSDLGLNPSNDGSIIRLVIPELTEETRKDLVKKVKKTGEESK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++R+IRRD D +K +K G SED V E+D+QK TD+ IK ID +K+KEI+ Sbjct: 126 VAIRSIRRDANDKIKALKKDGDLSEDQVKKGEDDVQKKTDAIIKEIDKIIVDKEKEILAI 185 >gi|32265940|ref|NP_859972.1| ribosome recycling factor [Helicobacter hepaticus ATCC 51449] gi|39932102|sp|Q7VJ10|RRF_HELHP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|32261989|gb|AAP77038.1| ribosome releasing factor [Helicobacter hepaticus ATCC 51449] Length = 185 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 62/186 (33%), Positives = 114/186 (61%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ +N K M +I L++D TLR+G+VS ++LD V+V+ YG+ PLNQV +V Sbjct: 2 LNEIF--KNAKSHMDKSIESLRRDFSTLRSGKVSVNILDNVRVDYYGTPTPLNQVGSVIA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + ++++ W+K ++ +E+ I E+N+G+NP + + +++ P T+E+R + K A + Sbjct: 60 QDATTIIITPWEKPLIKDIEKSIQEANIGVNPNSDSECVKLFFPPMTQEQRKEIAKNARS 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 EK+K+++RNIR+D + +KK K +ED +IQ+ TD +K D + K+ Sbjct: 120 MGEKAKVAIRNIRQDANNAIKKLEKDKSITEDENKKALEEIQRYTDEFVKKCDEMLKHKE 179 Query: 181 KEIMHF 186 +E+M Sbjct: 180 EEVMKV 185 >gi|194468465|ref|ZP_03074451.1| ribosome recycling factor [Lactobacillus reuteri 100-23] gi|194453318|gb|EDX42216.1| ribosome recycling factor [Lactobacillus reuteri 100-23] Length = 187 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 72/179 (40%), Positives = 117/179 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + K +M + L++ + +R G+ + S+L+ VKVE YG+ PLNQVA++T+ E R L Sbjct: 8 LNDAKQKMAKSGDALQRTLADIRAGQANASLLNSVKVEYYGAPTPLNQVASITIPEARQL 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +D+ ++ +E+ I+ SNLGL P +G +R+ +P+ TE+RR LVK A EK+K Sbjct: 68 LITPYDESVLEEIEKAIYASNLGLTPQNDGSSIRLIIPQLTEDRRKELVKDVKAELEKAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRN+RR+ MD LKK K+G ++D LE +Q TD+ IKN++ K+KE+M Sbjct: 128 VAVRNVRREAMDDLKKGNKNGDFNDDEFHDLEKKVQNETDAGIKNLEDIASAKEKELME 186 >gi|94985150|ref|YP_604514.1| ribosome recycling factor [Deinococcus geothermalis DSM 11300] gi|166230783|sp|Q1IZI9|RRF_DEIGD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|94555431|gb|ABF45345.1| ribosome recycling factor [Deinococcus geothermalis DSM 11300] Length = 183 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 70/177 (39%), Positives = 115/177 (64%), Gaps = 3/177 (1%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++RMG I L+ ++ LRTGR +P +L V VE YGS +P++QVA++T + R LV Sbjct: 9 ADARERMGKAIEALENNLSVLRTGRANPGILKKVMVEYYGSSMPIDQVASITTPDARTLV 68 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++ WD+ + +E+ I +S+LGLNP +G + I +P TEERR LVK A YAE++++ Sbjct: 69 ITPWDRGALNPIEKAIRDSDLGLNPNNKGDTIFISLPMLTEERRKDLVKNAKNYAEEARV 128 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++R+IR+ +D +KK +D + E ++QKITD IK ++ F +K++EI+ Sbjct: 129 AIRSIRKHALDEVKKVE---GVGDDEIKRAEAEVQKITDEYIKRVEDTFHKKEQEIL 182 >gi|329947861|ref|ZP_08294793.1| ribosome recycling factor [Actinomyces sp. oral taxon 170 str. F0386] gi|328523485|gb|EGF50583.1| ribosome recycling factor [Actinomyces sp. oral taxon 170 str. F0386] Length = 185 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 62/180 (34%), Positives = 108/180 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + +D+M + K ++ T+RTGR +PSM + + V+ YG+ PL Q+A++T+ E R + Sbjct: 6 MLEAEDKMDKALQAAKSELATIRTGRANPSMFNGIVVDYYGAPTPLQQLASLTIPEARTV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +VS +D+ + + I ES+LG+NP +G V+R+ +P TEERR VK+A + AE S+ Sbjct: 66 LVSPFDRSAMKDIVTAIRESDLGVNPTDDGTVIRVTLPALTEERRKDYVKLARSRAEDSR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 + VR IR L+ +K G+A ED V E+++ +T ++ +D+ K+ E++ Sbjct: 126 VQVRGIRAKAKKELEAIKKDGEAGEDDVKRAEHELDGLTKRFVEQVDAALSAKESELLEV 185 >gi|262370222|ref|ZP_06063548.1| ribosome releasing factor [Acinetobacter johnsonii SH046] gi|262314564|gb|EEY95605.1| ribosome releasing factor [Acinetobacter johnsonii SH046] Length = 184 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 110/179 (61%), Gaps = 1/179 (0%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ +DRM ++ L+ +RTGR PS+L+ V V YGS VPLNQVANV V + R L+ Sbjct: 7 KDAEDRMNKSLDSLEHGFAKVRTGRAHPSILNGVMVPYYGSDVPLNQVANVGVEDSRTLL 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +++ MVA++++ I ES+LGLNPI +R+P+ TEE R + KVA AE +K+ Sbjct: 67 IQPFERTMVAAIDKAIRESDLGLNPITA-DAIRVPMAALTEETRRDMQKVARNEAENAKV 125 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD + +K K + SED +DIQKITD + ID K+ E++ Sbjct: 126 AVRNIRRDVLGDIKALLKEKEISEDDERRASDDIQKITDKFVAEIDKRLANKEAELLKV 184 >gi|262376192|ref|ZP_06069422.1| ribosome recycling factor [Acinetobacter lwoffii SH145] gi|262308793|gb|EEY89926.1| ribosome recycling factor [Acinetobacter lwoffii SH145] Length = 184 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 73/179 (40%), Positives = 110/179 (61%), Gaps = 1/179 (0%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ +DRM T+ L+ +RTGR PS+L+ V V YGS VPLNQVANV V + R L+ Sbjct: 7 KDSEDRMNKTLESLEHGFAKVRTGRAHPSILNNVMVSYYGSDVPLNQVANVGVEDSRTLL 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +++ MV+++++ I ES+LGLNPI +R+P+ TEE R + KVA AE +K+ Sbjct: 67 IQPFERSMVSAIDKAIRESDLGLNPITA-DAIRVPMAALTEETRRDMQKVARNEAENAKV 125 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD + +K K + SED ++IQKITD + +D K+ E+M Sbjct: 126 AIRNIRRDVLGDIKALLKEKEISEDEERRAADEIQKITDKFVAEVDKRLAAKEAELMKV 184 >gi|255530032|ref|YP_003090404.1| ribosome recycling factor [Pedobacter heparinus DSM 2366] gi|255343016|gb|ACU02342.1| ribosome recycling factor [Pedobacter heparinus DSM 2366] Length = 187 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 74/188 (39%), Positives = 115/188 (61%), Gaps = 3/188 (1%) Query: 1 MNQVID--LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 MN +I LQ+ + M I + ++ +R G+ S MLD + V+ YG+ PL+QVA++ Sbjct: 1 MNDLIKKQLQDAQATMEKAILHCEAELTKIRAGKASAGMLDGIMVDYYGNPTPLSQVASI 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 + R L+V W+K ++ +ER I E+N+G+NP +G V+R+ VP TEERR LVK Sbjct: 61 NTPDARTLIVQPWEKTLLTPIERAIMEANIGINPQNDGIVIRLVVPPLTEERRKDLVKKV 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 AE+ +I+VRNIR+D + +KK K S+D + + E ++QKITD+ I +D E Sbjct: 121 KEEAERGRITVRNIRKDANEKIKKL-KGESVSDDEIKTGEAEVQKITDAYIIKVDKHAEA 179 Query: 179 KKKEIMHF 186 K+K+IM Sbjct: 180 KEKDIMTV 187 >gi|320532043|ref|ZP_08032932.1| ribosome recycling factor [Actinomyces sp. oral taxon 171 str. F0337] gi|320135743|gb|EFW27802.1| ribosome recycling factor [Actinomyces sp. oral taxon 171 str. F0337] Length = 185 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 63/180 (35%), Positives = 108/180 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + +D+M + K ++ T+RTGR +PSM + + V+ YG+ PL Q+A++T+ E R + Sbjct: 6 MLEAEDKMDKALQAAKSELATIRTGRANPSMFNGIVVDYYGAPTPLQQLASLTIPEARTV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +VS +D+ + + I ES+LG+NP +G V+R+ +P TEERR VK+A + AE S+ Sbjct: 66 LVSPFDRSAMKDIVTAIRESDLGVNPTDDGTVIRVTLPALTEERRKDYVKLARSRAEDSR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 + VR IR L+ +K G+A ED V E+++ +T ++ ID+ K+ E++ Sbjct: 126 VQVRGIRGKAKKELEAIKKDGEAGEDDVKRAEHELDGLTKRFVEQIDAALSAKESELLEV 185 >gi|262279362|ref|ZP_06057147.1| ribosome releasing factor [Acinetobacter calcoaceticus RUH2202] gi|262259713|gb|EEY78446.1| ribosome releasing factor [Acinetobacter calcoaceticus RUH2202] Length = 184 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 110/179 (61%), Gaps = 1/179 (0%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM T+ L+ +RTGR PS+L+ V V YGS VPLNQVANV + + R LV Sbjct: 7 KDSEQRMLKTLESLELGFAKVRTGRAHPSILNGVMVPYYGSDVPLNQVANVGIEDSRTLV 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +++ MV+++++ I ES+LGLNPI +R+P+P TEE R + KVA AE +K+ Sbjct: 67 VQPFERTMVSAIDKAIRESDLGLNPITA-DAIRVPLPALTEETRRDMQKVARNEAENAKV 125 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD + +K K + SED +DIQKITD + +D K+ E+M Sbjct: 126 AIRNIRRDVLGDIKALLKEKEISEDDERRAGDDIQKITDKYVAEVDKRLAAKEAELMKV 184 >gi|260654918|ref|ZP_05860406.1| ribosome recycling factor [Jonquetella anthropi E3_33 E1] gi|260630420|gb|EEX48614.1| ribosome recycling factor [Jonquetella anthropi E3_33 E1] Length = 183 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 66/177 (37%), Positives = 112/177 (63%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 ++K M I + + + +RTGR P ++ VK + YG+ PL Q+A V+VL+ R L + Sbjct: 5 DVKTPMQKVIDHMNGEFLGIRTGRAHPGLVGDVKADYYGTPTPLKQMATVSVLDARTLQI 64 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 + +D+ V ++E+ I +N+G+ P+V+G+V+R+ +PE T ERR L K E++KI+ Sbjct: 65 TPYDQTAVKTIEKAILAANIGVTPVVDGKVIRLSMPELTGERRKELCKYVSKLGEEAKIA 124 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +RN+RRD D KK+ +G+ SED + + + +QK TDS + +D +EK+KE+M Sbjct: 125 LRNLRRDANDFYKKAEDAGEISEDQLKTELDVVQKETDSFVSKVDELVKEKEKEVME 181 >gi|330872736|gb|EGH06885.1| ribosome recycling factor [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 185 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 67/179 (37%), Positives = 104/179 (58%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM ++ L +RTG+ PS+L V V YG+ PL+QVANVTV + R L Sbjct: 7 KDAQTRMQKSLESLAHAFTRIRTGKAHPSILGGVMVPYYGADTPLSQVANVTVKDSRTLQ 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +++ M+A+V++ I S LG NP G++L I +P TEE R K A AE +++ Sbjct: 67 VVAFERNMLAAVDKAIQSSGLGFNPTNLGELLLISMPALTEETRKGFTKQARDAAEDARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD + LK K + SED +D+QK+TD + I+ ++K+ ++M Sbjct: 127 AVRNIRRDALSQLKDLVKDKEISEDEERRAADDVQKLTDKFVAEIEVAVKQKEADLMAV 185 >gi|328955482|ref|YP_004372815.1| ribosome recycling factor [Coriobacterium glomerans PW2] gi|328455806|gb|AEB07000.1| ribosome recycling factor [Coriobacterium glomerans PW2] Length = 178 Score = 221 bits (565), Expect = 2e-56, Method: Composition-based stats. Identities = 62/179 (34%), Positives = 99/179 (55%), Gaps = 3/179 (1%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +I +M T++ LK + +RTGR + +L + ++ YG P+ QVA V V E +LV Sbjct: 3 SDISAQMDKTLASLKHNFSKVRTGRANAGILSDISIDYYGVPTPITQVAAVKVPEAHLLV 62 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + WD+ + ++ + I S+LG+ P +G V+R+P P TEERR LVK H AE +++ Sbjct: 63 IEPWDRGITDAIVKAIAASDLGITPNSDGSVVRLPFPAPTEERRRELVKECHELAEHARV 122 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+R IRR+ + + +ED V + IQK TD + ID + K+ E+M Sbjct: 123 SIRGIRREANGA---AERDENLTEDDVRRDQARIQKRTDEYVAKIDQMLKAKEAEVMEI 178 >gi|254382047|ref|ZP_04997409.1| ribosome recycling factor [Streptomyces sp. Mg1] gi|194340954|gb|EDX21920.1| ribosome recycling factor [Streptomyces sp. Mg1] Length = 185 Score = 221 bits (565), Expect = 2e-56, Method: Composition-based stats. Identities = 60/174 (34%), Positives = 102/174 (58%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M + K+D +RTGR P+M + + + YG+ P+NQ+A+ V EPRM +V+ +D Sbjct: 12 KMEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGAITPINQLASFAVPEPRMAIVTPFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + ++E+ I +S+LG+NP +G+++R+ PE T++RR +KVA AE SK+S+R + Sbjct: 72 ASALRNIEQAIRDSDLGVNPSNDGRIIRVTFPELTQDRRKEYIKVARTKAEDSKVSIRAV 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RR D L K K +A ED V E ++ T + +D + K+ E++ Sbjct: 132 RRKAKDALDKLVKDKEAGEDEVRRAEKELDDTTAKYVAQVDELLKHKEAELLEV 185 >gi|87199393|ref|YP_496650.1| ribosome recycling factor [Novosphingobium aromaticivorans DSM 12444] gi|123489816|sp|Q2G8K7|RRF_NOVAD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|87135074|gb|ABD25816.1| ribosome recycling factor [Novosphingobium aromaticivorans DSM 12444] Length = 185 Score = 221 bits (565), Expect = 2e-56, Method: Composition-based stats. Identities = 80/165 (48%), Positives = 108/165 (65%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D +++ RM + L+ D+ LRTGR + ++LD + VE YGSH+PL QVA V+ EPR Sbjct: 4 YDKADLERRMKGAVESLRGDLSGLRTGRANTALLDPIVVEVYGSHMPLAQVATVSAPEPR 63 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 +L V VWDK V VE+ I + LGLNPI +G LR+P+P+ TEERR L K+A YAE Sbjct: 64 LLSVQVWDKSNVTPVEKAIRSAGLGLNPISDGNTLRLPIPDLTEERRKELAKLASKYAEN 123 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTI 169 ++I++RN+RRDGMD LK + SED E D+QK+TD I Sbjct: 124 ARIAIRNVRRDGMDALKADESKKEISEDERKRAETDLQKLTDDII 168 >gi|121612237|ref|YP_999947.1| ribosome recycling factor [Campylobacter jejuni subsp. jejuni 81-176] gi|167004904|ref|ZP_02270662.1| ribosome recycling factor [Campylobacter jejuni subsp. jejuni 81-176] gi|166230776|sp|A1VXV6|RRF_CAMJJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|87250479|gb|EAQ73437.1| ribosome recycling factor [Campylobacter jejuni subsp. jejuni 81-176] Length = 185 Score = 221 bits (565), Expect = 3e-56, Method: Composition-based stats. Identities = 65/186 (34%), Positives = 110/186 (59%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ + Q + ++ LKKD TLRTG+V+ +LD + V+ YG+ PLNQVA V Sbjct: 2 LNEIFNKQKTQS--EKSLEALKKDFTTLRTGKVNIHILDHITVDYYGTQTPLNQVATVLA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + + ++ W+K ++ ++E I +N+G+NP +G+ +++ P T E+R VK A A Sbjct: 60 SDASTISITPWEKPLLKTIESAIAAANIGVNPNNDGESVKLFFPPMTREQREENVKQAKA 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 EK+K+S+RNIR+D D +KK K SED +++QK+TD+ ID + K+ Sbjct: 120 MGEKAKVSIRNIRKDANDAVKKLEKDKAISEDEAKKAYDEVQKLTDTYTTKIDESVKSKE 179 Query: 181 KEIMHF 186 E++ Sbjct: 180 SELLKV 185 >gi|188995696|ref|YP_001929948.1| ribosome recycling factor [Porphyromonas gingivalis ATCC 33277] gi|238689272|sp|B2RLV6|RRF_PORG3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|188595376|dbj|BAG34351.1| putative ribosome recycling factor [Porphyromonas gingivalis ATCC 33277] Length = 186 Score = 221 bits (565), Expect = 3e-56, Method: Composition-based stats. Identities = 68/180 (37%), Positives = 107/180 (59%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + M + +L + + +R G+ SP +LD + V YG+ PL QVA++ + + + Sbjct: 7 IAKATANMEKAVEYLDEQLSHVRAGKASPKLLDGIMVMYYGNATPLTQVASINTPDAKTI 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV+ W++ ++ +E+ I +S LG+ P G+++R+ +P TEERR LVK AE +K Sbjct: 67 VVTPWERSLIKDIEKAIMDSPLGITPENNGELIRLGLPPLTEERRRQLVKQIKGDAEDAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +SVRN RRD +D +KKS K+ ED+ E ++QK+ D IK ID F EK+KEIM Sbjct: 127 VSVRNARRDAIDAIKKSVKTDGTPEDVAKDAEAEMQKVHDRYIKKIDELFAEKEKEIMTV 186 >gi|320335233|ref|YP_004171944.1| ribosome-recycling factor [Deinococcus maricopensis DSM 21211] gi|319756522|gb|ADV68279.1| Ribosome-recycling factor [Deinococcus maricopensis DSM 21211] Length = 180 Score = 221 bits (565), Expect = 3e-56, Method: Composition-based stats. Identities = 69/184 (37%), Positives = 113/184 (61%), Gaps = 5/184 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M ++ + + RM I L+ M LRTGR +P +L ++VE YGS +P++QVA++T Sbjct: 1 MKEIF--ADTRARMTKAIEALENSMSVLRTGRANPGILKKIQVEYYGSTMPIDQVASITA 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R LV+ WD+ + +E+ I +S+LGLNP +G + I +P TEERR L+K A Sbjct: 59 PDARTLVIQPWDRGAINPIEKAIRDSDLGLNPNNKGDSIFISIPALTEERRKDLIKNAKG 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAE+ ++++RN+R+ +D +KK +D + E +IQKITD IK +D + K+ Sbjct: 119 YAEEGRVAIRNVRKSALDEIKKVE---GVGDDEIKRGEAEIQKITDEYIKKVDDVLDRKE 175 Query: 181 KEIM 184 ++I+ Sbjct: 176 QDIL 179 >gi|258591445|emb|CBE67746.1| Ribosome recycling factor (Ribosome-releasing factor) (RRF) [NC10 bacterium 'Dutch sediment'] Length = 185 Score = 221 bits (565), Expect = 3e-56, Method: Composition-based stats. Identities = 72/178 (40%), Positives = 110/178 (61%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 + M I K +RTGR S ++LD + VEAYGS VP+NQVA + V E R++ V Sbjct: 8 KAEKEMRKAIDATLKGFNGVRTGRASLTLLDGLMVEAYGSIVPVNQVATLAVPETRLITV 67 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 WD ++A++ER +S+LG++P +G+++RI +P TEERR LVK+ AE+ +++ Sbjct: 68 QPWDPSLLAAIERAFRKSDLGVSPTNDGKMIRIAIPPLTEERRKELVKIVRKIAEEGRVA 127 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 VRN+RR+ + LK+ + + SED V + IQ +T+ I ID +K+KEIM F Sbjct: 128 VRNVRREANEALKRHEREKEVSEDEVKHGADVIQDLTNRLIHEIDGLLAKKEKEIMEF 185 >gi|86149668|ref|ZP_01067898.1| ribosome recycling factor [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597400|ref|ZP_01100635.1| ribosome recycling factor [Campylobacter jejuni subsp. jejuni 84-25] gi|22001955|sp|Q9PIR0|RRF_CAMJE RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|85839936|gb|EAQ57195.1| ribosome recycling factor [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190461|gb|EAQ94435.1| ribosome recycling factor [Campylobacter jejuni subsp. jejuni 84-25] gi|284925510|gb|ADC27862.1| ribosome recycling factor [Campylobacter jejuni subsp. jejuni IA3902] gi|315930894|gb|EFV09879.1| ribosome recycling factor [Campylobacter jejuni subsp. jejuni 305] Length = 185 Score = 221 bits (565), Expect = 3e-56, Method: Composition-based stats. Identities = 65/186 (34%), Positives = 110/186 (59%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ + Q + ++ LKKD TLRTG+V+ +LD + V+ YG+ PLNQVA V Sbjct: 2 LNEIFNKQKTQS--EKSLEALKKDFTTLRTGKVNIHILDHITVDYYGTQTPLNQVATVLA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + + ++ W+K ++ ++E I +N+G+NP +G+ +++ P T E+R VK A A Sbjct: 60 SDASTISITPWEKPLLKTIESAIAAANIGVNPNNDGESVKLFFPPMTREQREENVKQAKA 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 EK+K+S+RNIR+D D +KK K SED +++QK+TD+ ID + K+ Sbjct: 120 MGEKAKVSIRNIRKDANDAVKKLEKDKAISEDEAKKAYDEVQKLTDTYTTKIDEGVKSKE 179 Query: 181 KEIMHF 186 E++ Sbjct: 180 SELLKV 185 >gi|326336602|ref|ZP_08202771.1| ribosome recycling factor [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691267|gb|EGD33237.1| ribosome recycling factor [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 184 Score = 221 bits (565), Expect = 3e-56, Method: Composition-based stats. Identities = 74/188 (39%), Positives = 115/188 (61%), Gaps = 6/188 (3%) Query: 1 MNQVID--LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 MN+ ID L++ K+ M +++ L+K ++ +R G+ SP ML V V+ YGS PL+QVANV Sbjct: 1 MNEEIDFILESTKEAMQGSVAHLEKSLLNIRAGKASPQMLGSVFVDYYGSQTPLSQVANV 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 + R + + W+K M++++E+ I +NLG NP+ G+ + I VP TEERR LVK A Sbjct: 61 NTPDSRTISIQPWEKNMLSTIEKAIMVANLGFNPMNNGETIIISVPPLTEERRKELVKQA 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 +E++KI VRN R++ +KK + S+D+ E +QK+TD IK ID + Sbjct: 121 KGESEEAKIGVRNARQEANKEIKKI----EISDDIKKDTEERVQKLTDKYIKQIDEILAK 176 Query: 179 KKKEIMHF 186 K+ EI+ Sbjct: 177 KEAEILKV 184 >gi|295426323|ref|ZP_06818982.1| ribosome recycling factor [Lactobacillus amylolyticus DSM 11664] gi|295063996|gb|EFG54945.1| ribosome recycling factor [Lactobacillus amylolyticus DSM 11664] Length = 185 Score = 221 bits (565), Expect = 3e-56, Method: Composition-based stats. Identities = 69/177 (38%), Positives = 118/177 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q K+ M +I +K++ ++R G + S+LD ++V YG+ PL Q+++V++ EPR+L Sbjct: 6 IQKAKENMEKSIKVFRKNLASIRAGVANASILDGIQVGYYGAPTPLKQISSVSIPEPRVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +D + +E + SNLGLNP +G+V+R+ +P+ T ERR + K AE++K Sbjct: 66 LITPYDINSLDDIEHALLASNLGLNPANDGKVIRLVIPQLTGERRQEIAKEVGKEAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 I+VRN+RRD M+ LK+ K + +ED +LE ++QK+TD +IK ID ++K+KEI Sbjct: 126 IAVRNVRRDAMNSLKRQLKDDEITEDEQRNLEKEVQKVTDDSIKEIDKIADDKRKEI 182 >gi|57168360|ref|ZP_00367494.1| ribosome recycling factor [Campylobacter coli RM2228] gi|305432776|ref|ZP_07401935.1| ribosome recycling factor [Campylobacter coli JV20] gi|57020168|gb|EAL56842.1| ribosome recycling factor [Campylobacter coli RM2228] gi|304444173|gb|EFM36827.1| ribosome recycling factor [Campylobacter coli JV20] Length = 185 Score = 221 bits (565), Expect = 3e-56, Method: Composition-based stats. Identities = 68/186 (36%), Positives = 112/186 (60%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++++ Q + ++ LKKD TLRTG+V+ +LD ++V+ YGS PLNQVA V Sbjct: 2 INEILNKQKTQS--EKSLEALKKDFTTLRTGKVNTHILDHIQVDYYGSLTPLNQVATVLA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + + ++ W+K M+ ++E I +N+G+NP +G+ +++ P T E+R VK A A Sbjct: 60 SDASTISITPWEKPMLKTIESAIAAANIGVNPNNDGESVKLFFPPMTREQREENVKQAKA 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 EK+K+SVRNIR+D D +KK K SED +++QK+TD+ ID + K+ Sbjct: 120 MGEKAKVSVRNIRKDANDAVKKLEKDKAISEDEAKKAYDEVQKLTDTYTAKIDESVKNKE 179 Query: 181 KEIMHF 186 E++ Sbjct: 180 SELLKV 185 >gi|218962144|ref|YP_001741919.1| ribosome recycling factor [Candidatus Cloacamonas acidaminovorans] gi|167730801|emb|CAO81713.1| ribosome recycling factor [Candidatus Cloacamonas acidaminovorans] Length = 184 Score = 221 bits (565), Expect = 3e-56, Method: Composition-based stats. Identities = 67/179 (37%), Positives = 106/179 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 N K++M + + +RTGR S S+LD +K+ YG P+ Q+ N+++ E RM+V Sbjct: 6 DNTKEKMQKSFDAMLHQYSKIRTGRASASILDDIKINYYGLPTPIKQLCNISIPEARMIV 65 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V WDK +A +E+ I +N+G+ P +G V+R+P TEE+R +VK +E +++ Sbjct: 66 VQPWDKTTLADIEKAILAANIGITPENDGNVIRLPFQPLTEEKRRDIVKNIKKISEDTRV 125 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD D +KK +K + SED ++Q +TD IK ID + K+KEIM Sbjct: 126 AIRNIRRDANDIVKKEKKDSEISEDDEKKQLKELQDLTDDWIKKIDEAEKAKEKEIMEV 184 >gi|161579528|ref|NP_905986.2| ribosome recycling factor [Porphyromonas gingivalis W83] gi|39932026|sp|Q7MTP6|RRF_PORGI RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor Length = 186 Score = 221 bits (565), Expect = 3e-56, Method: Composition-based stats. Identities = 68/180 (37%), Positives = 107/180 (59%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + M + +L + + +R G+ SP +LD + V YG+ PL QVA++ + + + Sbjct: 7 IAKATANMEKAVEYLDEQLSHVRAGKASPKLLDGIMVMYYGNATPLTQVASINTPDAKTI 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV+ W++ ++ +E+ I +S LG+ P G+++R+ +P TEERR LVK AE +K Sbjct: 67 VVTPWERSLIKDIEKAIMDSPLGITPENNGELIRLGLPPLTEERRRQLVKQTKGDAEDAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +SVRN RRD +D +KKS K+ ED+ E ++QK+ D IK ID F EK+KEIM Sbjct: 127 VSVRNARRDAIDAIKKSVKTDGTPEDVAKDAEAEMQKVHDRYIKKIDELFAEKEKEIMTV 186 >gi|299769701|ref|YP_003731727.1| ribosome recycling factor [Acinetobacter sp. DR1] gi|298699789|gb|ADI90354.1| ribosome recycling factor [Acinetobacter sp. DR1] Length = 184 Score = 221 bits (565), Expect = 3e-56, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 110/179 (61%), Gaps = 1/179 (0%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM T+ L+ +RTGR PS+L+ V V YGS VPLNQVANV + + R L+ Sbjct: 7 KDSEQRMLKTLESLELGFAKVRTGRAHPSILNGVMVPYYGSDVPLNQVANVGIEDSRTLI 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +++ MV+++++ I ES+LGLNPI +R+P+P TEE R + KVA AE +K+ Sbjct: 67 VQPFERTMVSAIDKAIRESDLGLNPITA-DAIRVPLPALTEETRRDMQKVARNEAENAKV 125 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD + +K K + SED +DIQKITD + +D K+ E+M Sbjct: 126 AIRNIRRDVLGDIKALLKEKEISEDDERRAGDDIQKITDKYVAEVDKRLAAKEAELMKV 184 >gi|326204054|ref|ZP_08193915.1| ribosome recycling factor [Clostridium papyrosolvens DSM 2782] gi|325985821|gb|EGD46656.1| ribosome recycling factor [Clostridium papyrosolvens DSM 2782] Length = 185 Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats. Identities = 68/179 (37%), Positives = 119/179 (66%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + I+++M TI+ LK ++ +R GR +P++LD + ++ YG+ P+ Q+A V+V E R+++ Sbjct: 7 KPIEEKMKKTINVLKDNLAGIRAGRANPAILDKLTIDYYGAATPIQQIATVSVPEARVIL 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + W+ +++ +E+ I +S++G+NP +G+V+R+ P TEERR L K A E+SK+ Sbjct: 67 IQPWEAKLLKDIEKEIQKSDIGINPNNDGKVIRLVFPALTEERRKELTKQAKKEGEESKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++R+IRRD ++ +K +K+G+ +ED + E DIQ +TD I +ID E K KEIM Sbjct: 127 AIRSIRRDSIEGMKSKKKNGEITEDDLKDAEKDIQNLTDRYIADIDKIIEAKDKEIMEV 185 >gi|78778906|ref|YP_397018.1| ribosome recycling factor [Prochlorococcus marinus str. MIT 9312] gi|123554500|sp|Q31C13|RRF_PROM9 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|78712405|gb|ABB49582.1| ribosome recycling factor [Prochlorococcus marinus str. MIT 9312] Length = 182 Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats. Identities = 67/179 (37%), Positives = 111/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q I++ M +I +++ T+RTGR + S+LD + VE YG+ P+ +A ++ ++ + + Sbjct: 4 QEIQENMNKSIEATQRNFNTIRTGRANASLLDRISVEYYGAETPIKSLATISTVDSQTIS 63 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +D + ++E+ I S+LG+ P +G+V+RI VP TEERR K+A YAE+ K+ Sbjct: 64 IQPFDISCLQAIEKSISMSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGKV 123 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD +D KK K G S D +++IQKIT+ I I++ EK+KEI+ Sbjct: 124 ALRNIRRDAVDKEKKDEKDGLISIDESRDNQSEIQKITNKFIALIETKLSEKEKEILKV 182 >gi|210633128|ref|ZP_03297695.1| hypothetical protein COLSTE_01608 [Collinsella stercoris DSM 13279] gi|210159282|gb|EEA90253.1| hypothetical protein COLSTE_01608 [Collinsella stercoris DSM 13279] Length = 177 Score = 221 bits (564), Expect = 4e-56, Method: Composition-based stats. Identities = 64/180 (35%), Positives = 102/180 (56%), Gaps = 3/180 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + +I++ M + LK + +RTGR + ++L + V+ YG P+ QVA V V E ML Sbjct: 1 MSDIRENMDKALESLKHNFAKVRTGRANANVLSDITVDYYGVATPITQVAAVKVPEAHML 60 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK +V ++ + + S+LG+ P +G V+R+P P TEERR LVK AE +K Sbjct: 61 VIEPWDKALVNAIVKAVTASDLGITPNSDGIVVRLPFPAPTEERRRELVKECRELAEHAK 120 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RN RRD + K + + +ED V + +QK TD + +D + K+ E+M Sbjct: 121 IAIRNTRRDANN---KLERDEELTEDEVRREQAKVQKATDEYVSKVDEMLKAKEAEVMEI 177 >gi|291542738|emb|CBL15848.1| ribosome recycling factor [Ruminococcus bromii L2-63] Length = 184 Score = 221 bits (564), Expect = 4e-56, Method: Composition-based stats. Identities = 64/179 (35%), Positives = 110/179 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ + M + ++ + +R GR +P++LD VKV+ YG+ P+NQ+A V+V E R L Sbjct: 5 LKKAGESMDRRLEHMRTEFSEIRAGRANPAVLDKVKVDYYGAPTPVNQLAAVSVTEARTL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WD ++ +E+ I S++G+NP +G+++R+ P TE+RR +VK AE++K Sbjct: 65 TIQPWDASVLRQIEKAIQTSDIGINPQNDGKIIRLIFPPLTEDRRKEIVKDVQKIAEETK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 I +RN+RR+ +D LK +K G+ +ED + E Q +TD +K ++S K+KEI+ Sbjct: 125 IQIRNVRRELIDKLKAMKKDGELTEDDLKQGEKKAQDLTDKYVKEVESVSAVKQKEILE 183 >gi|330959202|gb|EGH59462.1| ribosome recycling factor [Pseudomonas syringae pv. maculicola str. ES4326] Length = 185 Score = 221 bits (564), Expect = 4e-56, Method: Composition-based stats. Identities = 67/179 (37%), Positives = 105/179 (58%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM ++ L +RTG+ PS+L V V YG+ PL+QVANVTV + R L Sbjct: 7 KDAQVRMQKSLESLAHAFTRIRTGKAHPSILGGVMVPYYGADTPLSQVANVTVKDSRTLQ 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +++ M+A+V++ I S LG NP G++L I +P TEE R K A AE +++ Sbjct: 67 VVAFERNMLAAVDKAIQSSGLGFNPTNLGELLLISMPALTEETRKGFTKQARDAAEDARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD + LK K + SED +D+QK+TD + I++ ++K+ ++M Sbjct: 127 AVRNIRRDALSQLKDLVKDKEISEDEERRAADDVQKLTDKFVAEIEAAVKQKEADLMAV 185 >gi|28868743|ref|NP_791362.1| ribosome recycling factor [Pseudomonas syringae pv. tomato str. DC3000] gi|213969121|ref|ZP_03397260.1| ribosome recycling factor [Pseudomonas syringae pv. tomato T1] gi|301383984|ref|ZP_07232402.1| ribosome recycling factor [Pseudomonas syringae pv. tomato Max13] gi|302064130|ref|ZP_07255671.1| ribosome recycling factor [Pseudomonas syringae pv. tomato K40] gi|302134057|ref|ZP_07260047.1| ribosome recycling factor [Pseudomonas syringae pv. tomato NCPPB 1108] gi|34924934|sp|Q886P0|RRF_PSESM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|28851982|gb|AAO55057.1| ribosome recycling factor [Pseudomonas syringae pv. tomato str. DC3000] gi|213926119|gb|EEB59675.1| ribosome recycling factor [Pseudomonas syringae pv. tomato T1] gi|331016370|gb|EGH96426.1| ribosome recycling factor [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 185 Score = 221 bits (564), Expect = 4e-56, Method: Composition-based stats. Identities = 67/179 (37%), Positives = 105/179 (58%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM ++ L +RTG+ PS+L V V YG+ PL+QVANVTV + R L Sbjct: 7 KDAQTRMQKSLESLTHAFTRIRTGKAHPSILGGVMVPYYGADTPLSQVANVTVKDSRTLQ 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +++ M+A+V++ I S LG NP G++L I +P TEE R K A AE +++ Sbjct: 67 VVAFERNMLAAVDKAIQSSGLGFNPTNLGELLLISMPALTEETRKGFTKQARDAAEDARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD + LK K + SED +D+QK+TD + +I+ ++K+ ++M Sbjct: 127 AVRNIRRDALSQLKDLVKDKEISEDEERRAADDVQKLTDKFVADIEVAVKQKEADLMAV 185 >gi|149277338|ref|ZP_01883480.1| ribosome recycling factor (ribosome releasing factor) [Pedobacter sp. BAL39] gi|149232215|gb|EDM37592.1| ribosome recycling factor (ribosome releasing factor) [Pedobacter sp. BAL39] Length = 187 Score = 221 bits (564), Expect = 4e-56, Method: Composition-based stats. Identities = 76/188 (40%), Positives = 114/188 (60%), Gaps = 3/188 (1%) Query: 1 MNQVID--LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 MN +I LQ+ + M I + ++ +R G+ S MLD + V+ YGS L+QVA++ Sbjct: 1 MNDLIKKQLQDAQASMDKAIDHCESELTKIRAGKASAGMLDGIFVDYYGSSTGLSQVASI 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 + R L+V W+K M+ +ER I E+N+G+NP +G V+R+ VP TEERR LVK Sbjct: 61 NTPDARTLLVQPWEKNMLVPIERAIMEANIGINPQNDGVVIRLVVPPLTEERRRDLVKKV 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 AE+ KI+VRNIR+D + +KK K S+D + + E ++QKITD+ I +D E Sbjct: 121 KEEAERGKITVRNIRKDANEKIKKL-KGESVSDDEIKTGEAEVQKITDAYIIKVDKHAEA 179 Query: 179 KKKEIMHF 186 K+K+IM Sbjct: 180 KEKDIMTV 187 >gi|153952376|ref|YP_001397463.1| ribosome recycling factor [Campylobacter jejuni subsp. doylei 269.97] gi|166230775|sp|A7H1T3|RRF_CAMJD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|152939822|gb|ABS44563.1| ribosome recycling factor [Campylobacter jejuni subsp. doylei 269.97] Length = 185 Score = 221 bits (564), Expect = 4e-56, Method: Composition-based stats. Identities = 64/186 (34%), Positives = 109/186 (58%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ + Q + ++ LKKD TLRTG+++ +LD + V+ YG+ PLNQVA V Sbjct: 2 LNEIFNKQKTQS--EKSLEALKKDFTTLRTGKINTHILDHITVDYYGNQTPLNQVATVLA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + + ++ W+K ++ ++E I +N+G+NP +G+ +++ P T E+R VK A A Sbjct: 60 SDASTISITPWEKPLLKTIESAIAAANIGVNPNNDGESVKLFFPPMTREQREENVKQAKA 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 EK+K+S+RNIR+D D +KK K SED +++QK+TD ID + K+ Sbjct: 120 MGEKAKVSIRNIRKDANDAVKKLEKDKAISEDEAKKAYDEVQKLTDVYTTKIDESVKSKE 179 Query: 181 KEIMHF 186 E++ Sbjct: 180 SELLKV 185 >gi|239617981|ref|YP_002941303.1| ribosome recycling factor [Kosmotoga olearia TBF 19.5.1] gi|259494547|sp|C5CF34|RRF_KOSOT RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|239506812|gb|ACR80299.1| ribosome recycling factor [Kosmotoga olearia TBF 19.5.1] Length = 185 Score = 221 bits (564), Expect = 4e-56, Method: Composition-based stats. Identities = 74/180 (41%), Positives = 118/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ ++RM + + ++ +RTGR SP++L+ +KV+ YG P+NQ+A + V E R L Sbjct: 6 LKDAEERMKKSTEKISEEFSHMRTGRPSPAILEEIKVDYYGVPTPINQLATINVSEDRSL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ W+K M++ +E+ I SNLGL PI +G V+R+ P T E+R VK++ AEK K Sbjct: 66 IIRPWEKNMLSHIEKAILASNLGLTPINDGNVVRLNFPIPTTEQREKWVKLSKEIAEKGK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I+VRNIRRD + K+ K+ + +ED + E ++QK+TD ++ +D FE+KKKEIM F Sbjct: 126 IAVRNIRRDVLKEAKEMEKNKEMTEDDLRRFEEELQKLTDKYVEEMDKLFEKKKKEIMEF 185 >gi|260905212|ref|ZP_05913534.1| ribosome recycling factor [Brevibacterium linens BL2] Length = 185 Score = 221 bits (564), Expect = 4e-56, Method: Composition-based stats. Identities = 59/180 (32%), Positives = 108/180 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + F ++D ++RTGR +P++ ++++ YG+ PL Q+A+ E R + Sbjct: 6 LAEAREKMDKAVEFTQEDFSSIRTGRANPALFASIEIDYYGAPTPLQQLASFQTPEARTI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +D+ + +E + S++G NP +G V+R+ +PE TEERR VK+ AE K Sbjct: 66 LVTPYDRGALGDIETALRNSDIGANPANDGNVIRVVLPELTEERRKEYVKIVKGKAEDGK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+RNIRR + L++ +K G A ED VA +++ +T S + N+D +K+ E++ Sbjct: 126 VSIRNIRRHAKETLERIKKDGDAGEDEVARGISELDDLTKSKVDNVDKLLNQKEAELLEV 185 >gi|66044594|ref|YP_234435.1| ribosome recycling factor [Pseudomonas syringae pv. syringae B728a] gi|71733636|ref|YP_275975.1| ribosome recycling factor [Pseudomonas syringae pv. phaseolicola 1448A] gi|257487081|ref|ZP_05641122.1| ribosome recycling factor [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289626032|ref|ZP_06458986.1| ribosome recycling factor [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651451|ref|ZP_06482794.1| ribosome recycling factor [Pseudomonas syringae pv. aesculi str. 2250] gi|75503001|sp|Q4ZWS5|RRF_PSEU2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|123635426|sp|Q48F62|RRF_PSE14 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|63255301|gb|AAY36397.1| Ribosome recycling factor [Pseudomonas syringae pv. syringae B728a] gi|71554189|gb|AAZ33400.1| ribosome recycling factor [Pseudomonas syringae pv. phaseolicola 1448A] gi|320323117|gb|EFW79206.1| ribosome recycling factor [Pseudomonas syringae pv. glycinea str. B076] gi|320329611|gb|EFW85600.1| ribosome recycling factor [Pseudomonas syringae pv. glycinea str. race 4] gi|330867586|gb|EGH02295.1| ribosome recycling factor [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330878176|gb|EGH12325.1| ribosome recycling factor [Pseudomonas syringae pv. glycinea str. race 4] gi|330894596|gb|EGH27257.1| ribosome recycling factor [Pseudomonas syringae pv. mori str. 301020] gi|330985111|gb|EGH83214.1| ribosome recycling factor [Pseudomonas syringae pv. lachrymans str. M301315] gi|331009284|gb|EGH89340.1| ribosome recycling factor [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 185 Score = 221 bits (564), Expect = 4e-56, Method: Composition-based stats. Identities = 67/179 (37%), Positives = 104/179 (58%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM ++ L +RTG+ PS+L V V YG+ PL+QVANVTV + R L Sbjct: 7 KDAQTRMQKSLESLTHAFTRIRTGKAHPSILGGVMVPYYGADTPLSQVANVTVKDSRTLQ 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +++ M+A+V++ I S LG NP G++L I +P TEE R K A AE +++ Sbjct: 67 VVAFERNMLAAVDKAIQSSGLGFNPTNLGELLLISMPALTEETRKGFTKQARDAAEDARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD + LK K + SED +D+QK+TD + I+ ++K+ ++M Sbjct: 127 AVRNIRRDALSQLKDLVKEKEISEDEERRAADDVQKLTDKFVAEIEVAVKQKEADLMAV 185 >gi|73662818|ref|YP_301599.1| ribosome recycling factor [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123642440|sp|Q49X44|RRF_STAS1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|72495333|dbj|BAE18654.1| ribosome recycling factor [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 184 Score = 221 bits (564), Expect = 4e-56, Method: Composition-based stats. Identities = 73/186 (39%), Positives = 123/186 (66%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ +I+ K +M +I L +++ + GR + ++L+ V V+ YG+ P+ Q+A+++V Sbjct: 1 MSDIIN--ETKSKMQKSIDNLSRELANISAGRANSNLLNGVNVDYYGAPTPVQQLASISV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R+LV+S +DK V ++E+ I+ +NLG+NP +G+V+RI VP TEERR LVK Sbjct: 59 PEARLLVISPYDKSSVGNIEKAINAANLGVNPSSDGEVIRISVPALTEERRKELVKDVKK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E +K++VRN+RRD D LKK +K+ +ED + + +D+QK+TD +IK ++ EEK+ Sbjct: 119 IGEDAKVAVRNVRRDSNDELKKQQKNSDITEDDLRTQTDDVQKLTDDSIKEVEKLLEEKE 178 Query: 181 KEIMHF 186 ++IM Sbjct: 179 QDIMSV 184 >gi|218561898|ref|YP_002343677.1| ribosome recycling factor [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|112359604|emb|CAL34389.1| ribosome recycling factor [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315928162|gb|EFV07480.1| ribosome recycling factor [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 187 Score = 221 bits (564), Expect = 4e-56, Method: Composition-based stats. Identities = 65/186 (34%), Positives = 110/186 (59%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ + Q + ++ LKKD TLRTG+V+ +LD + V+ YG+ PLNQVA V Sbjct: 4 LNEIFNKQKTQS--EKSLEALKKDFTTLRTGKVNIHILDHITVDYYGTQTPLNQVATVLA 61 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + + ++ W+K ++ ++E I +N+G+NP +G+ +++ P T E+R VK A A Sbjct: 62 SDASTISITPWEKPLLKTIESAIAAANIGVNPNNDGESVKLFFPPMTREQREENVKQAKA 121 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 EK+K+S+RNIR+D D +KK K SED +++QK+TD+ ID + K+ Sbjct: 122 MGEKAKVSIRNIRKDANDAVKKLEKDKAISEDEAKKAYDEVQKLTDTYTTKIDEGVKSKE 181 Query: 181 KEIMHF 186 E++ Sbjct: 182 SELLKV 187 >gi|294790919|ref|ZP_06756077.1| ribosome recycling factor [Scardovia inopinata F0304] gi|294458816|gb|EFG27169.1| ribosome recycling factor [Scardovia inopinata F0304] Length = 184 Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats. Identities = 67/186 (36%), Positives = 114/186 (61%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ V+D + + +M TI K++ + +RTGR +P++ + + V+ YG+ PL +A + V Sbjct: 1 MSTVVD--DAQKQMNKTIESTKENFVGIRTGRANPALFNGLTVDYYGAPTPLKALATIGV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R L V+ +D A++E+ I +S+LG+NP +G V+ + +PE TEERR VK+AH Sbjct: 59 TDNRTLAVTPFDVSQSAAIEKAIRDSDLGVNPRRDGNVIHVTLPELTEERRKDYVKLAHE 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 +AEK K++VR+IRR + ++ + K G ED L+ D++K T + ID+ K+ Sbjct: 119 FAEKGKVAVRSIRRKAKEDIESATKDGDYGEDEGKRLQADLEKATKKATEEIDTLLHTKE 178 Query: 181 KEIMHF 186 KEI+ Sbjct: 179 KEILSV 184 >gi|291277175|ref|YP_003516947.1| ribosome recycling factor [Helicobacter mustelae 12198] gi|290964369|emb|CBG40219.1| ribosome recycling factor [Helicobacter mustelae 12198] Length = 185 Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats. Identities = 71/186 (38%), Positives = 113/186 (60%), Gaps = 1/186 (0%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M Q I Q+ K M +I LK+D +TLR+G+VS ++LD VKV+ YG+ PLNQV +V Sbjct: 1 MTQEI-FQHTKTHMDKSIDALKRDFLTLRSGKVSVNILDNVKVDYYGTPTPLNQVGSVIA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + ++++ W+K ++ +ER I E+N+G+NP +G+ +++ P T+E+R + K A Sbjct: 60 QDATTILITPWEKNLLKDIERAIQEANIGVNPNNDGETIKLFFPPMTQEQRKEIAKDTKA 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 EK+KI++RNIR+D + +KK K +ED + IQK TD K ID + K+ Sbjct: 120 MGEKAKIAIRNIRQDSNNQIKKLEKDKSITEDESKKAHDTIQKYTDEYAKKIDEMVKHKE 179 Query: 181 KEIMHF 186 E+M Sbjct: 180 DEVMKV 185 >gi|300743956|ref|ZP_07072976.1| ribosome recycling factor [Rothia dentocariosa M567] gi|311113206|ref|YP_003984428.1| ribosome recycling factor [Rothia dentocariosa ATCC 17931] gi|300380317|gb|EFJ76880.1| ribosome recycling factor [Rothia dentocariosa M567] gi|310944700|gb|ADP40994.1| ribosome recycling factor [Rothia dentocariosa ATCC 17931] Length = 185 Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats. Identities = 55/180 (30%), Positives = 103/180 (57%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++M TI +K + +RTGRV+P++ + + YG+ PL Q+ + V + R + Sbjct: 6 LAEAGEKMDKTIEAIKTEFAKVRTGRVNPAIFSSITADYYGAPTPLQQLVSFNVEDARTV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + +D +A++E+ + +S+LG+NP +G +R+ +PE T ERR +K+ + AE+++ Sbjct: 66 KIVPFDVSALAAIEKAVRDSDLGVNPSNDGAAIRVVMPEMTSERRKEYIKLVNHKAEEAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +SVRN+RR + K K G+ ED A E ++ +T + ID ++ K+ E++ Sbjct: 126 VSVRNVRRHAKTVIDKLVKDGEIGEDDGARAEKELDALTKKHVDTIDELYKHKESELLEV 185 >gi|156743850|ref|YP_001433979.1| ribosome recycling factor [Roseiflexus castenholzii DSM 13941] gi|189044069|sp|A7NQW5|RRF_ROSCS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|156235178|gb|ABU59961.1| ribosome recycling factor [Roseiflexus castenholzii DSM 13941] Length = 185 Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats. Identities = 65/180 (36%), Positives = 110/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ + RM L+ + T+RTGR SP++++ + VEAYG+ +PLNQ+A +TV EPRML Sbjct: 6 LREAESRMKKATEALRNHLATIRTGRASPALVEHLHVEAYGATLPLNQLATITVPEPRML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +D V ++ + I S LG+ P +G+++R+ +P+ TE RR L K+ A E+SK Sbjct: 66 VIQPFDANTVKAISKAIMNSELGITPTDDGRLIRLAIPQLTEARRKELTKLVRARVEESK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRR+ ++ L+ SED + +Q++TD ++ +D K+ E+M Sbjct: 126 VALRNIRREALEDLRDLEHEKMISEDEHRRAQEKLQELTDRYVRELDHIGATKEAEVMEI 185 >gi|152965386|ref|YP_001361170.1| ribosome recycling factor [Kineococcus radiotolerans SRS30216] gi|189044059|sp|A6W7W7|RRF_KINRD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|151359903|gb|ABS02906.1| ribosome recycling factor [Kineococcus radiotolerans SRS30216] Length = 185 Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats. Identities = 58/180 (32%), Positives = 106/180 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M I K D +RTGR + +M + V+ YG+ PL Q+A+ + E R + Sbjct: 6 LLEAEEKMEKAIEVAKGDFGAIRTGRANAAMFHKIMVDYYGAPTPLQQLASFQIPEARSV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +D+ ++ +E+ + S+LG+NP +G V+RI +P+ TEERR +K+A AE ++ Sbjct: 66 LITPFDRAAMSEIEKALRNSDLGVNPGNDGNVIRIVLPQLTEERRKDYIKIARTKAEDAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+RN+RR + L + K G+A ED V E +++ +T + ID + K+ E++ Sbjct: 126 VSLRNVRRRAKEELDRIVKDGEAGEDEVGRAEKELEAVTKKHVDAIDELLKNKEAELLAV 185 >gi|302837099|ref|XP_002950109.1| hypothetical protein VOLCADRAFT_80962 [Volvox carteri f. nagariensis] gi|300264582|gb|EFJ48777.1| hypothetical protein VOLCADRAFT_80962 [Volvox carteri f. nagariensis] Length = 266 Score = 221 bits (563), Expect = 5e-56, Method: Composition-based stats. Identities = 60/179 (33%), Positives = 107/179 (59%), Gaps = 4/179 (2%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ +RM ++ + T+RTGR +P++LD + V+ +G+ PL Q+ VTV + + L+ Sbjct: 92 KDADERMKKCLNVVADGFNTIRTGRANPAILDKITVDYFGAPTPLKQMGAVTVPDSQTLM 151 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++ +D+ + +ER I ES++G+NP +G+ +R+ +P T+ERR L K E K+ Sbjct: 152 IAPFDRSTLKDIERAIQESDIGINPNNDGERIRLVMPPMTQERRKDLAKQVSKMTEDGKV 211 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN+R+D M + K + +D +LE+DIQK+TD +K +D + K E+M Sbjct: 212 AVRNVRKDAMKKVDKV----ELPKDDKKALEDDIQKLTDLYVKKLDDMAKAKTDEVMKL 266 >gi|227544958|ref|ZP_03975007.1| ribosome recycling factor [Lactobacillus reuteri CF48-3A] gi|300910011|ref|ZP_07127471.1| ribosome recycling factor [Lactobacillus reuteri SD2112] gi|227185069|gb|EEI65140.1| ribosome recycling factor [Lactobacillus reuteri CF48-3A] gi|300892659|gb|EFK86019.1| ribosome recycling factor [Lactobacillus reuteri SD2112] Length = 187 Score = 221 bits (563), Expect = 5e-56, Method: Composition-based stats. Identities = 72/179 (40%), Positives = 117/179 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + K +M + L++ + +R G+ + S+L+ VKVE YG+ PLNQVA++T+ E R L Sbjct: 8 LNDAKQKMAKSGDALQRTLADIRAGQANASLLNSVKVEYYGAPTPLNQVASITIPEARQL 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +D+ ++ +E+ I+ SNLGL P +G +R+ +P+ TE+RR LVK A EK+K Sbjct: 68 LITPYDESVLEEIEKAIYASNLGLTPQNDGSSIRLIIPQLTEDRRKELVKDVKAELEKAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRN+RR+ MD LKK K+G ++D LE +Q TD+ IKN++ K+KE+M Sbjct: 128 VAVRNVRREAMDDLKKGNKNGDFNDDEFHDLEKKVQNETDAGIKNLEDIANTKEKELME 186 >gi|229495839|ref|ZP_04389565.1| ribosome recycling factor [Porphyromonas endodontalis ATCC 35406] gi|229317152|gb|EEN83059.1| ribosome recycling factor [Porphyromonas endodontalis ATCC 35406] Length = 187 Score = 221 bits (563), Expect = 5e-56, Method: Composition-based stats. Identities = 71/179 (39%), Positives = 106/179 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q + M + I +L + + +R G+ +P +LD + V YG+ PLNQV VTV + R +V Sbjct: 9 QQAETGMQNAIEYLDEKLAHIRAGKANPKILDDIMVSYYGTMTPLNQVGTVTVPDARTIV 68 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++ W+K+++ +E+ I +S LG+ P G ++RI +P TEERR LVK E++KI Sbjct: 69 ITPWEKKIIKDIEKAIIDSPLGIMPENNGDLIRIGIPPLTEERRKVLVKQVKGEVEEAKI 128 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRN RRD +D +KKS K+ ED+ E IQK+ D I D F K+KEI+ Sbjct: 129 SVRNARRDAIDAVKKSVKADGTPEDVAKDAEAAIQKLHDKYISRCDELFAAKEKEILTV 187 >gi|319937403|ref|ZP_08011810.1| flagellar biosynthetic protein flhB [Coprobacillus sp. 29_1] gi|319807769|gb|EFW04362.1| flagellar biosynthetic protein flhB [Coprobacillus sp. 29_1] Length = 181 Score = 221 bits (563), Expect = 5e-56, Method: Composition-based stats. Identities = 71/180 (39%), Positives = 115/180 (63%), Gaps = 4/180 (2%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ K++M +I K ++ T+RTGR +P+MLD V V YG PLNQ+A+++V+E R L Sbjct: 6 LEETKEKMDKSIDAFKNELSTVRTGRANPTMLDRVMVNYYGEKTPLNQMASISVVEGRQL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +DK + +E G++E++LGL P +G+V+RI VP TEE R VK A +AE +K Sbjct: 66 MIKPYDKSTLKDIEHGVYEADLGLAPQNDGEVIRINVPALTEETRRGYVKQAKKFAEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRR D + K+ +ED V + +QK+TD +K ID ++K++++M Sbjct: 126 VALRNIRRSANDDVDKA----GLTEDEVKQGKERVQKLTDEYVKIIDQLAKDKEEDLMSV 181 >gi|161507690|ref|YP_001577644.1| ribosome recycling factor [Lactobacillus helveticus DPC 4571] gi|172048311|sp|A8YVR6|RRF_LACH4 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|160348679|gb|ABX27353.1| ribosome recycling factor Rrf [Lactobacillus helveticus DPC 4571] gi|323466331|gb|ADX70018.1| Ribosome-recycling factor [Lactobacillus helveticus H10] Length = 185 Score = 220 bits (562), Expect = 5e-56, Method: Composition-based stats. Identities = 72/177 (40%), Positives = 117/177 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +D M +I +K + ++R G + ++LD V+VE YG+ PL Q++++T+ EPR+L Sbjct: 6 IKKAQDNMDKSIKVYQKRLASIRAGVANAALLDNVQVEYYGAPTPLTQMSSITIPEPRVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +D+ + +E + SNLGL P +G+V+R+ +P+ T ERR + K YAE +K Sbjct: 66 LITPYDQNSLDDIEHALLASNLGLTPANDGKVIRLVIPQLTGERREEIAKEVGKYAEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 I+VRN+RR+ MD LKK +K G +ED +LE +QKITD + K ID +EK+KEI Sbjct: 126 IAVRNVRREAMDALKKEQKDGNITEDEQRNLEKQVQKITDDSTKKIDQLADEKRKEI 182 >gi|260101372|ref|ZP_05751609.1| ribosome recycling factor [Lactobacillus helveticus DSM 20075] gi|260084824|gb|EEW68944.1| ribosome recycling factor [Lactobacillus helveticus DSM 20075] gi|328465732|gb|EGF36936.1| ribosome recycling factor [Lactobacillus helveticus MTCC 5463] Length = 185 Score = 220 bits (562), Expect = 6e-56, Method: Composition-based stats. Identities = 72/179 (40%), Positives = 118/179 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +D M +I +K + ++R G + ++LD V+VE YG+ PL Q++++T+ EPR+L Sbjct: 6 IKKAQDNMDKSIKVYQKRLASIRAGVANAALLDNVQVEYYGAPTPLTQMSSITIPEPRVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +D+ + +E + SNLGL P +G+V+R+ +P+ T ERR + K YAE +K Sbjct: 66 LITPYDQNSLDDIEHALLASNLGLTPANDGKVIRLVIPQLTGERREEIAKEVGKYAEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 I+VRN+RR+ MD LKK +K G +ED +LE +QKITD + K ID +EK+KEI+ Sbjct: 126 IAVRNVRREAMDALKKEQKDGNITEDEQRNLEKQVQKITDDSTKKIDQLADEKRKEIIQ 184 >gi|123965820|ref|YP_001010901.1| ribosome recycling factor [Prochlorococcus marinus str. MIT 9515] gi|166230816|sp|A2BVI3|RRF_PROM5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|123200186|gb|ABM71794.1| Ribosome recycling factor [Prochlorococcus marinus str. MIT 9515] Length = 182 Score = 220 bits (562), Expect = 6e-56, Method: Composition-based stats. Identities = 66/179 (36%), Positives = 108/179 (60%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q I+ M ++ +++ T+RTGR + S+LD + VE YG+ P+ +A++ ++ + + Sbjct: 4 QEIQSSMNKSVEATQRNFNTIRTGRANASLLDRISVEYYGAETPIKSLASIATVDSQTIS 63 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +D + ++E+ I S+LG+ P +G+V+RI VP TEERR K+A YAE+ K+ Sbjct: 64 IQPFDISCLQAIEKAISMSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGKV 123 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD +D KK K G S D + +IQK TD I I++ EK+KEI+ Sbjct: 124 ALRNIRRDAVDKEKKDEKEGLISIDESRDNQLEIQKFTDKYISLIETKLSEKEKEILKV 182 >gi|297626637|ref|YP_003688400.1| ribosome recycling factor (ribosome-releasing factor) (RRF) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922402|emb|CBL56974.1| Ribosome recycling factor (Ribosome-releasing factor) (RRF) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 185 Score = 220 bits (562), Expect = 6e-56, Method: Composition-based stats. Identities = 56/180 (31%), Positives = 104/180 (57%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +++ + +M I F K+D +RTGR +P+M + ++ E YG P+ Q+A+ + +PR + Sbjct: 6 IKSAEKKMQGAIDFAKEDFSGVRTGRANPAMFEKLEAEYYGVPTPIQQLASFSSPDPRTM 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK + ++E+ + +S+LG+NP +G +R +PE TEERR +K+ AE +K Sbjct: 66 LITPYDKGALGAIEKAVRDSDLGVNPASDGNAIRAVLPELTEERRKEYIKIVRTKAEDAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++R RR GMD +K K + ED E + +T + +D + K+ E++ Sbjct: 126 IAIRGHRRRGMDAIKAQEKDKEIGEDDARVSEKQLDAVTKKYTELVDELLKAKEAELLAV 185 >gi|206889935|ref|YP_002249340.1| ribosome recycling factor [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741873|gb|ACI20930.1| ribosome recycling factor [Thermodesulfovibrio yellowstonii DSM 11347] Length = 185 Score = 220 bits (562), Expect = 6e-56, Method: Composition-based stats. Identities = 81/179 (45%), Positives = 123/179 (68%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++M + KKD+ T RTGR S +LD +KVE YGS VPLNQVA + + EPRM+ Sbjct: 7 KKANEKMNQALEVFKKDLSTFRTGRASLGILDNIKVEYYGSTVPLNQVATLGIPEPRMIT 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + W+++M++ +ER I +S+LGL PI +G++++I +P TEERR LVKV E++++ Sbjct: 67 IQPWEQKMISEIERAIMKSDLGLTPINDGKMIKIVIPPLTEERRKQLVKVVRKRTEEARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD ++ +KK+ K K SED ++ +IQKIT+S I+ ID E+K+KEIM Sbjct: 127 AIRNIRRDIIEEIKKAEKEKKLSEDESRRIQEEIQKITNSFIEKIDHALEQKEKEIMEV 185 >gi|227495072|ref|ZP_03925388.1| ribosome recycling factor [Actinomyces coleocanis DSM 15436] gi|226831524|gb|EEH63907.1| ribosome recycling factor [Actinomyces coleocanis DSM 15436] Length = 185 Score = 220 bits (562), Expect = 7e-56, Method: Composition-based stats. Identities = 60/177 (33%), Positives = 109/177 (61%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 ++ M ++ K++ +RTGR +P + + V+ YG+ PL Q+A+V + E RM++VS Sbjct: 9 AEEGMEKALAATKREFGNIRTGRANPETFNSLLVDYYGAPTPLQQLASVQIPEARMVLVS 68 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 +D+ + ++ I ES+LG+NP +G V+R +P TEERR VK+A + AE ++S+ Sbjct: 69 PYDRSAMQAIITAIRESDLGVNPTDDGNVIRCTLPALTEERRKEYVKLAKSKAEDGRVSI 128 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RN+RR + L + +K G+A ED V E +++ +T + + +D+ + K+K++M Sbjct: 129 RNVRRKAKEELDRIKKDGEAGEDEVERAEKELETLTKNFVAKVDAELDAKEKDLMTV 185 >gi|283458519|ref|YP_003363147.1| ribosome recycling factor [Rothia mucilaginosa DY-18] gi|283134562|dbj|BAI65327.1| ribosome recycling factor [Rothia mucilaginosa DY-18] Length = 203 Score = 220 bits (562), Expect = 7e-56, Method: Composition-based stats. Identities = 55/180 (30%), Positives = 100/180 (55%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++M TI K + +RTGRV+P++ + E YG+ PL Q+ + V + R + Sbjct: 24 LAEAGEKMEKTIEATKTEFAKVRTGRVNPAIFSGLTAEYYGAPTPLQQLVSFNVEDARTV 83 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + +D +A++E+ + +S+LG+NP +G +R+ +PE T ERR K+ + AE+++ Sbjct: 84 KIVPFDVTALAAIEKALRDSDLGVNPSNDGAAIRVVMPEMTAERRKEYTKLVNHKAEEAR 143 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 IS+RN+RR + K K + ED A E ++ T I +D+ ++ K+ E++ Sbjct: 144 ISIRNVRRHAKTAIDKLVKDSEIGEDEGARAEKELDAQTKKHIDQVDALYKHKEAELLEV 203 >gi|150009958|ref|YP_001304701.1| ribosome recycling factor [Parabacteroides distasonis ATCC 8503] gi|255012780|ref|ZP_05284906.1| ribosome recycling factor [Bacteroides sp. 2_1_7] gi|256838752|ref|ZP_05544262.1| ribosome recycling factor [Parabacteroides sp. D13] gi|262382735|ref|ZP_06075872.1| ribosome recycling factor [Bacteroides sp. 2_1_33B] gi|298374315|ref|ZP_06984273.1| ribosome recycling factor [Bacteroides sp. 3_1_19] gi|301307843|ref|ZP_07213799.1| ribosome recycling factor [Bacteroides sp. 20_3] gi|190360244|sp|A6LHB5|RRF_PARD8 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|149938382|gb|ABR45079.1| ribosome recycling factor [Parabacteroides distasonis ATCC 8503] gi|256739671|gb|EEU52995.1| ribosome recycling factor [Parabacteroides sp. D13] gi|262295613|gb|EEY83544.1| ribosome recycling factor [Bacteroides sp. 2_1_33B] gi|298268683|gb|EFI10338.1| ribosome recycling factor [Bacteroides sp. 3_1_19] gi|300834186|gb|EFK64800.1| ribosome recycling factor [Bacteroides sp. 20_3] Length = 187 Score = 220 bits (562), Expect = 7e-56, Method: Composition-based stats. Identities = 75/180 (41%), Positives = 114/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +++M I +L + + +R G+ +P +LD VKV YG+ VPL VA VTV + R + Sbjct: 8 IKAGEEKMTFAIEYLDEQLSHIRAGKANPKILDCVKVMYYGAPVPLTNVATVTVPDARTI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ W+K+++ +E+GI +S LG+ P G+V+R+ +P TEERR LVK AE +K Sbjct: 68 MITPWEKKIIRDIEKGILDSELGITPENNGEVIRLGIPPLTEERRRQLVKQCKQEAENAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ISVRN RRD ++ LKKS KS ED+ E ++QKI D IK ID + K+KE+M Sbjct: 128 ISVRNARRDAIEALKKSIKSDGVPEDVEKDAEAEVQKIHDKFIKKIDELYAAKEKEVMTV 187 >gi|319789070|ref|YP_004150703.1| ribosome recycling factor [Thermovibrio ammonificans HB-1] gi|317113572|gb|ADU96062.1| ribosome recycling factor [Thermovibrio ammonificans HB-1] Length = 185 Score = 220 bits (561), Expect = 7e-56, Method: Composition-based stats. Identities = 70/180 (38%), Positives = 114/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ RM + LK D LRTGR S +++ +KV+ YGS + + Q+A ++V E + Sbjct: 6 LKDADKRMKKAVEVLKADFAGLRTGRASTVLVEDIKVDYYGSTMTIKQIAQISVPEANQI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WD +V +VE+ I ES+LG+ P +G ++R+ +P TEERR LVK A AE+++ Sbjct: 66 VIQPWDASVVPNVEKAIRESDLGVQPQRDGNIIRVILPPLTEERRKELVKKAGKMAEQAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIR + M L K +K G SED + ++++QKITD K +D+ ++K++EI+ Sbjct: 126 IAIRNIRHEIMKELDKLKKEGGYSEDDIKRAKDELQKITDKYTKEVDNLLQKKEEEILTI 185 >gi|295136354|ref|YP_003587030.1| ribosome releasing factor [Zunongwangia profunda SM-A87] gi|294984369|gb|ADF54834.1| ribosome releasing factor [Zunongwangia profunda SM-A87] Length = 184 Score = 220 bits (561), Expect = 7e-56, Method: Composition-based stats. Identities = 81/188 (43%), Positives = 115/188 (61%), Gaps = 6/188 (3%) Query: 1 MNQVIDL--QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 M + I+L + ++ M + IS L K ++ +R G+ SPSML V VE YGS PLNQVANV Sbjct: 1 MEEEIELIIDSAEEGMQNAISHLNKQLLNIRAGKASPSMLGSVMVEYYGSLTPLNQVANV 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 + R + V ++K + ++E+GI ++NLG NP+ G+ + I VP TEERR LVK A Sbjct: 61 NAPDARTISVQPFEKGSIPNIEKGILQANLGFNPMNNGESVIISVPPLTEERRKQLVKQA 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 + AE +K+ VRN R+ + LKK + SED+ + E DIQ++TD I ID E Sbjct: 121 KSEAEDAKVGVRNDRKTANNELKKI----EVSEDLQKNAEADIQELTDKYIAKIDRILEA 176 Query: 179 KKKEIMHF 186 K+KEIM Sbjct: 177 KEKEIMTI 184 >gi|302187901|ref|ZP_07264574.1| ribosome recycling factor [Pseudomonas syringae pv. syringae 642] Length = 185 Score = 220 bits (561), Expect = 7e-56, Method: Composition-based stats. Identities = 67/179 (37%), Positives = 105/179 (58%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM ++ L +RTG+ PS+L V V YG+ PL+QVANVTV + R L Sbjct: 7 KDAQTRMQKSLESLTHAFTRIRTGKAHPSILGGVMVPYYGADTPLSQVANVTVKDSRTLQ 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +++ M+A+V++ I S LG NP G++L I +P TEE R K A AE +++ Sbjct: 67 VVAFERNMLAAVDKAIQSSGLGFNPTNLGELLLISMPALTEETRKGFTKQARDAAEDARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD + LK K + SED +D+QK+TD + +I+ ++K+ ++M Sbjct: 127 AVRNIRRDALSQLKDLVKEKEISEDEERRAADDVQKLTDKFVADIEVAVKQKEADLMAV 185 >gi|148926382|ref|ZP_01810066.1| ribosome recycling factor [Campylobacter jejuni subsp. jejuni CG8486] gi|145844774|gb|EDK21879.1| ribosome recycling factor [Campylobacter jejuni subsp. jejuni CG8486] Length = 183 Score = 220 bits (561), Expect = 7e-56, Method: Composition-based stats. Identities = 66/180 (36%), Positives = 107/180 (59%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L N K + ++ LKKD TLRTG+V+ +LD + V+ YG+ PLNQVA V + + Sbjct: 4 LTNKKPKSEKSLEALKKDFTTLRTGKVNTHILDHITVDYYGTQTPLNQVATVLASDASTI 63 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ W+K ++ ++E I +N+G+NP +G+ +++ P T E+R VK A A EK+K Sbjct: 64 SITPWEKPLLKTIESAIAAANIGVNPNNDGESVKLFFPPMTREQREENVKQAKAMGEKAK 123 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+RNIR+D D +KK K SED +++QK+TD+ ID + K+ E++ Sbjct: 124 VSIRNIRKDANDAVKKLEKDKAISEDEAKKAYDEVQKLTDTYTTKIDESVKSKESELLKV 183 >gi|148543919|ref|YP_001271289.1| ribosome recycling factor [Lactobacillus reuteri DSM 20016] gi|184153315|ref|YP_001841656.1| ribosome recycling factor [Lactobacillus reuteri JCM 1112] gi|227364829|ref|ZP_03848877.1| ribosome recycling factor [Lactobacillus reuteri MM2-3] gi|325682546|ref|ZP_08162063.1| ribosome recycling factor [Lactobacillus reuteri MM4-1A] gi|166991557|sp|A5VJC8|RRF_LACRD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|229564260|sp|B2G6U4|RRF_LACRJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|148530953|gb|ABQ82952.1| ribosome recycling factor [Lactobacillus reuteri DSM 20016] gi|183224659|dbj|BAG25176.1| ribosome recycling factor [Lactobacillus reuteri JCM 1112] gi|227070173|gb|EEI08548.1| ribosome recycling factor [Lactobacillus reuteri MM2-3] gi|324978385|gb|EGC15335.1| ribosome recycling factor [Lactobacillus reuteri MM4-1A] Length = 187 Score = 220 bits (561), Expect = 8e-56, Method: Composition-based stats. Identities = 72/179 (40%), Positives = 117/179 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + K +M + L++ + +R G+ + S+L+ VKVE YG+ PLNQVA++T+ E R L Sbjct: 8 LNDAKQKMAKSGYALQRTLADIRAGQANASLLNSVKVEYYGAPTPLNQVASITIPEARQL 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +D+ ++ +E+ I+ SNLGL P +G +R+ +P+ TE+RR LVK A EK+K Sbjct: 68 LITPYDESVLEEIEKAIYASNLGLTPQNDGSSIRLIIPQLTEDRRKELVKDVKAELEKAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRN+RR+ MD LKK K+G ++D LE +Q TD+ IKN++ K+KE+M Sbjct: 128 VAVRNVRREAMDDLKKGNKNGDFNDDEFHDLEKKVQNETDAGIKNLEDIANAKEKELME 186 >gi|315453412|ref|YP_004073682.1| ribosome recycling factor [Helicobacter felis ATCC 49179] gi|315132464|emb|CBY83092.1| ribosome recycling factor [Helicobacter felis ATCC 49179] Length = 185 Score = 220 bits (561), Expect = 8e-56, Method: Composition-based stats. Identities = 65/179 (36%), Positives = 110/179 (61%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + +++M ++ L +D TLR+G+VS S+++ V+V+ YG+ PLNQV +V + L Sbjct: 7 KQTQNQMHKSLEALLRDFTTLRSGKVSISLVENVRVDYYGTPTPLNQVGSVIASDASTLS 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++ W+K ++ +ER + E+NLG NP +G+ +++ P T E+R + K A EK+K+ Sbjct: 67 ITPWEKNLLKDIERALQEANLGANPNNDGESVKLFFPPMTSEQRKEIAKEAKGMGEKAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIR+D + +KK K SED ++QKITDS IK I+ + K++EI+ Sbjct: 127 AVRNIRQDANNQIKKLEKDKAISEDQGKKALAEVQKITDSAIKKIEEVLKHKEEEILKI 185 >gi|259503115|ref|ZP_05746017.1| ribosome recycling factor [Lactobacillus antri DSM 16041] gi|259168981|gb|EEW53476.1| ribosome recycling factor [Lactobacillus antri DSM 16041] Length = 186 Score = 220 bits (561), Expect = 8e-56, Method: Composition-based stats. Identities = 72/179 (40%), Positives = 117/179 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + K +M + L++ + +R G+ + S+L+ VKVE YG+ PLNQVA++T+ E R L Sbjct: 8 LNDAKQKMKKSGEALQRSLADIRAGQANASLLNSVKVEYYGAPTPLNQVASITIPEARQL 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +D+ ++ +E+ I+ SNLGL P +G +R+ +P+ TE+RR LVK A EK+K Sbjct: 68 LVTPYDESILEEIEKAIYASNLGLTPQNDGSAIRLIIPQLTEDRRKELVKDVKAELEKAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRN+RR+ MD LKK K+G ++D LE +Q TD+ IKN++ K+KE++ Sbjct: 128 VAVRNVRREAMDDLKKGNKNGDFNDDEFHDLEKQVQNETDAGIKNLEEIAGAKEKELLQ 186 >gi|86153726|ref|ZP_01071929.1| ribosome recycling factor [Campylobacter jejuni subsp. jejuni HB93-13] gi|85842687|gb|EAQ59899.1| ribosome recycling factor [Campylobacter jejuni subsp. jejuni HB93-13] Length = 185 Score = 220 bits (561), Expect = 8e-56, Method: Composition-based stats. Identities = 65/186 (34%), Positives = 110/186 (59%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ + Q + ++ LKKD TLRTG+V+ +LD + V+ YG+ PLNQVA V Sbjct: 2 LNEIFNKQKTQS--EKSLEALKKDFTTLRTGKVNIHILDHITVDYYGTQTPLNQVATVLA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + + ++ W+K ++ ++E I +N+G+NP +G+ +++ P T E+R VK A A Sbjct: 60 SDASTISITPWEKPLLKTIESAIAAANIGVNPNNDGESVKLFFPPMTREQREENVKQAKA 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 EK+K+S+RNIR+D D +KK K SED +++QK+TD+ ID + K+ Sbjct: 120 MGEKAKVSIRNIRKDANDAVKKLEKDKAISEDEAKKAYDEVQKLTDAYTIKIDESVKSKE 179 Query: 181 KEIMHF 186 E++ Sbjct: 180 SELLKV 185 >gi|118580463|ref|YP_901713.1| ribosome recycling factor [Pelobacter propionicus DSM 2379] gi|166230813|sp|A1AQN5|RRF_PELPD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|118503173|gb|ABK99655.1| ribosome recycling factor [Pelobacter propionicus DSM 2379] Length = 185 Score = 219 bits (560), Expect = 9e-56, Method: Composition-based stats. Identities = 66/180 (36%), Positives = 111/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++K M T++ LK + +RTGR S ++LD VK++ YG+ P++Q+A + + EPRM+ Sbjct: 6 LSDMKTHMEKTVAVLKAEFQKVRTGRASTAILDSVKMDYYGNPTPISQIATLAIPEPRMI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ W+ + ++ +E+ I +N+GL P +G+ +R+ +P TEERR +VK AE ++ Sbjct: 66 TITPWEAKQISVIEKAIFNANIGLTPSNDGKSIRLSLPPLTEERRREIVKDLKKMAEDNR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD +D LKK K +ED + E ++Q T S ID K+KE+M Sbjct: 126 VALRNIRRDAIDRLKKLEKDKSITEDELKKYEKEVQDNTKSFEIKIDEAMTNKEKEVMEV 185 >gi|289675260|ref|ZP_06496150.1| ribosome recycling factor [Pseudomonas syringae pv. syringae FF5] gi|330896060|gb|EGH28281.1| ribosome recycling factor [Pseudomonas syringae pv. japonica str. M301072PT] gi|330936821|gb|EGH40974.1| ribosome recycling factor [Pseudomonas syringae pv. pisi str. 1704B] gi|330975398|gb|EGH75464.1| ribosome recycling factor [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 185 Score = 219 bits (560), Expect = 9e-56, Method: Composition-based stats. Identities = 67/179 (37%), Positives = 103/179 (57%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM ++ L +RTG+ PS+L V V YG+ PL QVANVTV + R L Sbjct: 7 KDAQTRMQKSLESLTHAFTRIRTGKAHPSILGGVMVPYYGADTPLAQVANVTVKDSRTLQ 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +++ M+A+V++ I S LG NP G++L I +P TEE R K A AE +++ Sbjct: 67 VVAFERNMLAAVDKAIQSSGLGFNPTNLGELLLISMPALTEETRKGFTKQARDAAEDARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD + LK K + SED +D+QK+TD + I+ ++K+ ++M Sbjct: 127 AVRNIRRDALSQLKDLVKEKEISEDEERRAADDVQKLTDKFVAEIEVAVKQKEADLMAV 185 >gi|257464022|ref|ZP_05628407.1| ribosome recycling factor (RRF) [Fusobacterium sp. D12] gi|317061543|ref|ZP_07926028.1| ribosome recycling factor [Fusobacterium sp. D12] gi|313687219|gb|EFS24054.1| ribosome recycling factor [Fusobacterium sp. D12] Length = 189 Score = 219 bits (560), Expect = 9e-56, Method: Composition-based stats. Identities = 80/179 (44%), Positives = 114/179 (63%), Gaps = 2/179 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q + +M T+ K+ ++R GR S +MLD +KVE YGS +PLNQVA V+ E R+L Sbjct: 8 IQECESKMKKTVEATKEKFTSIRAGRASVAMLDTIKVEQYGSEMPLNQVATVSAPEARLL 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK M+ +E+ I +NLG+NP +G+V+R+ +PE T ERR VK+A AE K Sbjct: 68 VIDPWDKTMIPKIEKAILAANLGMNPNNDGRVVRLVMPELTAERRKEYVKLAKKEAENGK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGK--ASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 I+VRNIR+D LKK K + SED + E ++Q +TD TIK +D +K+KEI Sbjct: 128 IAVRNIRKDMNTALKKIEKDKESGMSEDELKRFEAEVQTLTDKTIKELDELLAKKEKEI 186 >gi|315038582|ref|YP_004032150.1| ribosome recycling factor [Lactobacillus amylovorus GRL 1112] gi|312276715|gb|ADQ59355.1| ribosome recycling factor [Lactobacillus amylovorus GRL 1112] Length = 185 Score = 219 bits (560), Expect = 1e-55, Method: Composition-based stats. Identities = 69/177 (38%), Positives = 116/177 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ ++ M +I +K + ++R G + ++LD V+VE YG+ PL Q++++T+ EPR+L Sbjct: 6 IKKAQENMDKSIKVYQKKLASIRAGVANAALLDNVQVEYYGAPTPLTQMSSITIPEPRVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +D+ + +E + SNLGL P +G+V+R+ +P+ T ERR + K YAE++K Sbjct: 66 LITPYDQNSLDDIEHALLASNLGLTPANDGKVIRLVIPQLTGERREEIAKEVGKYAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 I+VRN+RRD M+ LK+ K G +ED +LE +QK+TD K ID +EK+KEI Sbjct: 126 IAVRNVRRDAMNSLKREEKDGDITEDEQRNLEKQVQKVTDGAAKKIDQLADEKRKEI 182 >gi|325681407|ref|ZP_08160933.1| ribosome recycling factor [Ruminococcus albus 8] gi|324106897|gb|EGC01187.1| ribosome recycling factor [Ruminococcus albus 8] Length = 184 Score = 219 bits (560), Expect = 1e-55, Method: Composition-based stats. Identities = 72/186 (38%), Positives = 120/186 (64%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 MN++ + K++M +++ + D +R GR +P++LD VKVE YG+ P+NQ+A ++V Sbjct: 1 MNEIKN--KAKEKMEKSVNVMLSDFAAIRAGRANPAVLDKVKVEYYGAPTPVNQMAAISV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R+LV++ WDK + S+E+ I S++G+NP +GQ +R+ P+ TE+RR +VK Sbjct: 59 AEARILVITPWDKSTLKSIEKAIQASDIGINPQNDGQTIRLIFPQLTEDRRKEIVKDVKK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E K++VR+IRRD ++ +K +K+ + +ED E IQK+TD +K ID+ EK+ Sbjct: 119 GGEDCKVAVRSIRRDAIEKIKAKKKNNEITEDEQKDGEEAIQKLTDKFVKEIDAHVAEKE 178 Query: 181 KEIMHF 186 KEI+ Sbjct: 179 KEILSI 184 >gi|255524238|ref|ZP_05391197.1| ribosome recycling factor [Clostridium carboxidivorans P7] gi|296185359|ref|ZP_06853769.1| ribosome recycling factor [Clostridium carboxidivorans P7] gi|255512063|gb|EET88344.1| ribosome recycling factor [Clostridium carboxidivorans P7] gi|296050193|gb|EFG89617.1| ribosome recycling factor [Clostridium carboxidivorans P7] Length = 185 Score = 219 bits (560), Expect = 1e-55, Method: Composition-based stats. Identities = 72/180 (40%), Positives = 118/180 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ ++M T+ LK+++ +++ GR +P+MLD ++ E YG+ P+NQ+AN++V EPR+L Sbjct: 6 MKKADEKMNKTVEALKRELASMKAGRANPAMLDKIEAEYYGTMTPINQLANISVPEPRVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK ++E+ I +S+LG+NP +G+++R+ + E TEE R +VK E SK Sbjct: 66 AIQPWDKGSFKAIEKAILKSDLGINPSSDGEMIRLVIAELTEETRKNIVKNIKKDGEDSK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VR+IRRD D +K +K SED + E++IQK TD+ IK +D E K+KEIM Sbjct: 126 VAVRSIRRDCNDKIKVLKKESDISEDEIKKAEDEIQKKTDAFIKQVDKIVEAKEKEIMSL 185 >gi|126666177|ref|ZP_01737157.1| ribosome recycling factor [Marinobacter sp. ELB17] gi|126629499|gb|EBA00117.1| ribosome recycling factor [Marinobacter sp. ELB17] Length = 185 Score = 219 bits (560), Expect = 1e-55, Method: Composition-based stats. Identities = 72/178 (40%), Positives = 102/178 (57%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 + +M +I L +RTGR PS+LD V V YG PL QVA+V V + R L V Sbjct: 8 EAEIKMTKSIEALASAFNKIRTGRAHPSILDSVMVNYYGQETPLRQVASVNVEDSRTLTV 67 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 S W+K +V +E+ I S+LGLNP G ++R+P+P TEE R +VK A A AE ++S Sbjct: 68 SPWEKNLVPQIEKAIMTSDLGLNPSTSGDLIRLPMPMLTEETRKNMVKQARADAEHGRVS 127 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 VRN RRD LK+ K SED E ++QK+TD I ++ + K++++M Sbjct: 128 VRNARRDANSTLKELLKDKDISEDDERRGEEEVQKLTDRFIAEVEKLLKGKEEDLMAV 185 >gi|308800952|ref|XP_003075257.1| putative Ribosome recycling factor, (ISS) [Ostreococcus tauri] gi|116061811|emb|CAL52529.1| putative Ribosome recycling factor, (ISS) [Ostreococcus tauri] Length = 236 Score = 219 bits (560), Expect = 1e-55, Method: Composition-based stats. Identities = 63/181 (34%), Positives = 106/181 (58%), Gaps = 1/181 (0%) Query: 3 QVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLE 62 + I+L + +RM T+ + D T+RTGR + S+LD ++V+ YG+ PL +AN + + Sbjct: 54 EEIEL-DAMERMEKTMDAIANDFSTVRTGRANASVLDRIEVDYYGAATPLKTIANASTPD 112 Query: 63 PRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 + +V+ +DK + +ER I+ES+LG+ P +G V+R+ VP TEERR L K+ Sbjct: 113 AQTIVIQPFDKGAIKDIERAINESDLGMTPSNDGNVIRLNVPTLTEERRKELAKLVSKLG 172 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 E K+++RN+RRD M +K K ED +A L+ ++ +T + +K +D K E Sbjct: 173 EDGKVALRNVRRDAMKAYEKLEKDNALGEDEIAKLKKSMEDLTSAYVKKVDEATAAKSAE 232 Query: 183 I 183 + Sbjct: 233 L 233 >gi|225619145|ref|YP_002720371.1| ribosome recycling factor [Brachyspira hyodysenteriae WA1] gi|225213964|gb|ACN82698.1| ribosome recycling factor [Brachyspira hyodysenteriae WA1] Length = 182 Score = 219 bits (560), Expect = 1e-55, Method: Composition-based stats. Identities = 81/176 (46%), Positives = 112/176 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ KDRM IS L+ D+ +RTGR + S+LD VKVEAYGS +PL QV NV+ + R ++ Sbjct: 4 ESYKDRMEKAISSLQNDLKGIRTGRANASILDGVKVEAYGSSMPLKQVGNVSTPDSRTIM 63 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +DK +V+ +E+ I +++LG NP +G +RI VPE T+ERR L K E++KI Sbjct: 64 IQPFDKGLVSDIEKAILKADLGFNPFNDGGNIRIVVPELTKERREELKKGVRHRGEEAKI 123 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +VRNIRRD D +KK K +ED S E IQ TDS IK ID K+KE+ Sbjct: 124 AVRNIRRDENDKIKKELKDKTITEDESKSQEKKIQNDTDSYIKKIDDMINTKEKEL 179 >gi|295111329|emb|CBL28079.1| ribosome recycling factor [Synergistetes bacterium SGP1] Length = 185 Score = 219 bits (560), Expect = 1e-55, Method: Composition-based stats. Identities = 60/180 (33%), Positives = 116/180 (64%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 +L+ +++ M I FL+ + +++RTGR P ++ +K++ YG+ PL Q+AN+T+ E R Sbjct: 5 ELKELQESMDKAIDFLQNEYLSIRTGRAHPGLVSDIKLDYYGTPTPLKQIANITIPESRT 64 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 + ++ +D+ + ++E+ I +N+G+ P +G +R+ +PE T ERR+ L K+ AE + Sbjct: 65 IQIAPFDRTSLKAIEKAILAANIGMTPQNDGASIRLTLPELTRERRVELTKLLAKKAEDA 124 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++ VRN RRD ++ LKK K+ + +ED + +L +Q TD+ +K +D ++ K+KE++ Sbjct: 125 RVVVRNYRRDAIESLKKQEKASEITEDDLKTLTKGVQDKTDAYVKKVDEIYKAKEKEVLE 184 >gi|225574998|ref|ZP_03783608.1| hypothetical protein RUMHYD_03077 [Blautia hydrogenotrophica DSM 10507] gi|225037845|gb|EEG48091.1| hypothetical protein RUMHYD_03077 [Blautia hydrogenotrophica DSM 10507] Length = 183 Score = 219 bits (560), Expect = 1e-55, Method: Composition-based stats. Identities = 81/180 (45%), Positives = 117/180 (65%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 LQ D+M T L+ D+ T+R GR +P +LD ++V+ YG+ PL QVAN+TV EPR++ Sbjct: 5 LQKYDDKMSKTKKSLEADLATIRAGRANPHILDKIQVDYYGTPSPLQQVANITVPEPRVI 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + W+ +MV + + I S+LG+NP +G+++R+ +PE TEERR LVK E +K Sbjct: 65 QIQPWEAKMVKEISKAILSSDLGINPNTDGKMIRLILPELTEERRKELVKDVKKRGEAAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD D KK K+ SED V LE+ IQK+TD +K IDS E+K KEI+ Sbjct: 125 VAIRNIRRDANDAFKKLAKA-DVSEDEVKELEDKIQKMTDKAVKEIDSTVEQKSKEILTV 183 >gi|254443219|ref|ZP_05056695.1| ribosome recycling factor [Verrucomicrobiae bacterium DG1235] gi|198257527|gb|EDY81835.1| ribosome recycling factor [Verrucomicrobiae bacterium DG1235] Length = 186 Score = 219 bits (560), Expect = 1e-55, Method: Composition-based stats. Identities = 66/183 (36%), Positives = 111/183 (60%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M++ +++++ I + + TG+ +P M++ + VEAYGS + L ++A +T Sbjct: 1 MDEETIFLTLEEKVEKAIEHTANEFAGVNTGKANPGMVEGISVEAYGSQMSLKEMAAITT 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R + + WDK ++ ++E+ I SN+G+ P + G V+R+P+PE T ERR +LVKV Sbjct: 61 PDARTIAIQPWDKSVIKAIEKAILTSNIGITPAIMGDVIRLPLPELTGERRQSLVKVVSK 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE ++++RN RRD MD +KK +K G SED + E DIQ TD +IK I+ K+ Sbjct: 121 QAEDGRVAIRNSRRDAMDAIKKLQKDGDISEDDLKRCEKDIQNTTDESIKKINDLLAAKE 180 Query: 181 KEI 183 K++ Sbjct: 181 KDL 183 >gi|220915424|ref|YP_002490728.1| ribosome recycling factor [Anaeromyxobacter dehalogenans 2CP-1] gi|254809486|sp|B8J9V9|RRF_ANAD2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|219953278|gb|ACL63662.1| ribosome recycling factor [Anaeromyxobacter dehalogenans 2CP-1] Length = 188 Score = 219 bits (560), Expect = 1e-55, Method: Composition-based stats. Identities = 70/188 (37%), Positives = 113/188 (60%), Gaps = 2/188 (1%) Query: 1 MNQVID--LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 M + D L ++ R+ T+ L+ ++ +RTGR S +LD V+V+ YG+ PLNQVA + Sbjct: 1 MGTIADDILDDLHGRILKTLDQLRTELAAVRTGRASLHLLDNVRVDYYGTPTPLNQVATL 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 +V E R++VV W+K M+ +E+ I + NLGLNP+ + ++R+P+P TEERR +VK Sbjct: 61 SVPEARLIVVKPWEKSMIPPIEKAIRDGNLGLNPMSDKDLVRVPIPALTEERRKEIVKQV 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 E+ KI+VRN+RR+ + ++ + K G S D +QK TD +K ID Sbjct: 121 KHKGEEHKIAVRNVRREAKELIEVAEKDGDISGDDAEKALEKMQKETDDGVKKIDEIVAA 180 Query: 179 KKKEIMHF 186 K+K+++ Sbjct: 181 KEKDVLQV 188 >gi|237800146|ref|ZP_04588607.1| ribosome recycling factor [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023003|gb|EGI03060.1| ribosome recycling factor [Pseudomonas syringae pv. oryzae str. 1_6] Length = 185 Score = 219 bits (560), Expect = 1e-55, Method: Composition-based stats. Identities = 68/179 (37%), Positives = 104/179 (58%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM ++ L +RTG+ PS+L V V YG+ PL+QVANVTV + R L Sbjct: 7 KDAQVRMQKSLESLAHAFTRIRTGKAHPSILGGVMVPYYGADTPLSQVANVTVKDSRTLQ 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +++ M+A+V++ I S LG NP G++L I +P TEE R K A AE +++ Sbjct: 67 VVAFERNMLAAVDKAIQSSGLGFNPTNLGELLLISMPALTEETRKGFTKQARDAAEDARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD + LK K + SED +DIQK+TD + I+ ++K+ ++M Sbjct: 127 AVRNIRRDALSQLKDLVKEKEISEDEERRGADDIQKLTDKFVAEIEVAVKQKEADLMAV 185 >gi|325295600|ref|YP_004282114.1| ribosome-recycling factor [Desulfurobacterium thermolithotrophum DSM 11699] gi|325066048|gb|ADY74055.1| Ribosome-recycling factor [Desulfurobacterium thermolithotrophum DSM 11699] Length = 185 Score = 219 bits (560), Expect = 1e-55, Method: Composition-based stats. Identities = 71/180 (39%), Positives = 113/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ +RM + LK D LRTGR S +++ +KV+ YGS + + Q+A + V EP + Sbjct: 6 LKDADNRMKKAVEVLKTDFAGLRTGRASTVLVEDIKVDYYGSIMTIKQIAQIAVPEPTQI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WD ++ ++E+ I ES+LG+ P +G ++RI +P TEERR LVK A AE++K Sbjct: 66 TIQPWDVSVIPNIEKAIRESDLGVQPQRDGNIIRINLPPLTEERRKELVKKAGKMAEQAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIR + M L K +K G SED + ++++QKITD K ID ++K++EI+ Sbjct: 126 IAIRNIRHEIMKELDKLKKEGGYSEDDIKRAKDELQKITDKHTKKIDELLQKKEEEILTV 185 >gi|328954577|ref|YP_004371911.1| Ribosome-recycling factor [Desulfobacca acetoxidans DSM 11109] gi|328454901|gb|AEB10730.1| Ribosome-recycling factor [Desulfobacca acetoxidans DSM 11109] Length = 185 Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats. Identities = 70/180 (38%), Positives = 119/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ ++ +M + L++D +RTGR S ++L+ +K+EAYG+ +P++QVA++ EPR+L Sbjct: 6 IKEMQRKMDRALEVLRQDFSRIRTGRASVALLEGIKMEAYGATMPISQVASLAAPEPRLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WD +++ +E+ + +S+LGL P +G+++RIP+P T ERR LVK E+SK Sbjct: 66 TIQPWDSSLMSDLEKALLKSDLGLTPSNDGKIIRIPIPPLTTERRKELVKTTKKMTEESK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RN+RR+ + LK+ +K + SED V + ++QK TD IK D EK+KEIM F Sbjct: 126 VALRNLRREANELLKELKKEKQISEDEVFKAQEEVQKATDDYIKKADGLAAEKEKEIMSF 185 >gi|298488335|ref|ZP_07006367.1| Ribosome recycling factor [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157157|gb|EFH98245.1| Ribosome recycling factor [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 185 Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats. Identities = 67/179 (37%), Positives = 103/179 (57%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM ++ L +RTG+ PS+L V V YG+ PL+QVANVTV + R L Sbjct: 7 KDAQTRMQKSLESLNHAFTRIRTGKAHPSILGGVMVPYYGADTPLSQVANVTVKDSRTLQ 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V ++ M+A+V++ I S LG NP G++L I +P TEE R K A AE +++ Sbjct: 67 VVAFELNMLAAVDKAIQSSGLGFNPTNLGELLLISMPALTEETRKGFTKQARDAAEDARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD + LK K + SED +D+QK+TD + I+ ++K+ ++M Sbjct: 127 AVRNIRRDALSQLKDLVKEKEISEDEERRAADDVQKLTDKFVAEIEVAVKQKEADLMAV 185 >gi|289178551|gb|ADC85797.1| Ribosome Recycling Factor (RRF) [Bifidobacterium animalis subsp. lactis BB-12] Length = 186 Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats. Identities = 68/186 (36%), Positives = 110/186 (59%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M V+D K++M ++ K++ +RTGR +P++L+ + VE YG+ PL VA + V Sbjct: 3 MANVVD--QSKEQMKKSVESTKENFAGIRTGRANPALLNGIVVEYYGAPTPLKHVATIGV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPR L V+ +D +VE+ + +S+LG +P G + + +PE TE+RR VK+A + Sbjct: 61 PEPRTLSVTPFDPSQANAVEKALRDSDLGASPRRNGSAILLTMPELTEDRRKEYVKLAKS 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE K++VRNIRR + + K+ K G+ ED L ++ K+T +T +D+ E K+ Sbjct: 121 KAEDGKVAVRNIRRKSKEAIDKAVKDGEMGEDEGDRLLKELDKVTKATTDELDALLEAKQ 180 Query: 181 KEIMHF 186 KEIM Sbjct: 181 KEIMEV 186 >gi|197120712|ref|YP_002132663.1| ribosome recycling factor [Anaeromyxobacter sp. K] gi|238689905|sp|B4UMC6|RRF_ANASK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|196170561|gb|ACG71534.1| ribosome recycling factor [Anaeromyxobacter sp. K] Length = 188 Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats. Identities = 70/188 (37%), Positives = 113/188 (60%), Gaps = 2/188 (1%) Query: 1 MNQVID--LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 M + D L ++ R+ T+ L+ ++ +RTGR S +LD V+V+ YG+ PLNQVA + Sbjct: 1 MGTIADDILDDLHGRILKTLDQLRTELAAVRTGRASLHLLDNVRVDYYGTPTPLNQVATL 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 +V E R++VV W+K M+ +E+ I + NLGLNP+ + ++R+P+P TEERR +VK Sbjct: 61 SVPEARLIVVKPWEKSMIPPIEKAIRDGNLGLNPMSDKDLVRVPIPALTEERRKEIVKQV 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 E+ KI+VRN+RR+ + ++ + K G S D +QK TD +K ID Sbjct: 121 KHKGEEHKIAVRNVRREAKELIEVAEKDGDISGDDAEKALEKMQKETDEGVKKIDEIVAA 180 Query: 179 KKKEIMHF 186 K+K+++ Sbjct: 181 KEKDVLQV 188 >gi|33861078|ref|NP_892639.1| ribosome recycling factor [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|39932081|sp|Q7V2F9|RRF_PROMP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|33639810|emb|CAE18980.1| Ribosome recycling factor [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 182 Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats. Identities = 66/179 (36%), Positives = 111/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q I+ M ++ +++ T+RTGR + S+LD + VE YG+ P+ +A+++ ++ + + Sbjct: 4 QEIQSSMNKSVEATQRNFNTIRTGRANASLLDRISVEYYGAETPIKSLASISTIDSQTIS 63 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +D + ++E+ I S+LG+ P +G+V+RI VP TEERR K+A YAE+ K+ Sbjct: 64 IQPFDISSLQTIEKAISVSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGKV 123 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD +D KK K G S+D+ + +IQK TD I I++ EK+KEI+ Sbjct: 124 ALRNIRRDAVDKEKKDEKEGLISKDVSRDNQLEIQKFTDKYISLIETKLSEKEKEILKV 182 >gi|312871359|ref|ZP_07731455.1| ribosome recycling factor [Lactobacillus iners LEAF 3008A-a] gi|312872418|ref|ZP_07732487.1| ribosome recycling factor [Lactobacillus iners LEAF 2062A-h1] gi|312873341|ref|ZP_07733394.1| ribosome recycling factor [Lactobacillus iners LEAF 2052A-d] gi|311091131|gb|EFQ49522.1| ribosome recycling factor [Lactobacillus iners LEAF 2052A-d] gi|311092000|gb|EFQ50375.1| ribosome recycling factor [Lactobacillus iners LEAF 2062A-h1] gi|311093111|gb|EFQ51459.1| ribosome recycling factor [Lactobacillus iners LEAF 3008A-a] Length = 185 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 75/183 (40%), Positives = 122/183 (66%), Gaps = 1/183 (0%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ VI ++ K M +IS +K++ +R G + S+LD +KVE YG PL Q++++T+ Sbjct: 1 MSNVI-IEKAKANMSKSISVFEKELGGIRAGVANASLLDGIKVEYYGVPTPLTQMSSITI 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R+L+++ +DK + ++E I S+LG+ P +G V+RI +P+ T ERR+ + K Sbjct: 60 PEARVLMITPFDKTTLNNIEHAILASDLGITPANDGSVVRIVIPQLTGERRIEIAKKVGK 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE++KI++RNIRR+G+D LKK +K G+ +ED + E DIQKITD K++D+ ++K Sbjct: 120 LAEQAKIAIRNIRREGIDALKKQQKDGEITEDDLHKFEKDIQKITDDATKDVDALADKKS 179 Query: 181 KEI 183 KEI Sbjct: 180 KEI 182 >gi|24215994|ref|NP_713475.1| ribosome recycling factor [Leptospira interrogans serovar Lai str. 56601] gi|45656744|ref|YP_000830.1| ribosome recycling factor [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|34924967|sp|Q8F143|RRF_LEPIN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|59798561|sp|Q72U11|RRF_LEPIC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|24197218|gb|AAN50493.1|AE011490_8 ribosome recycling factor [Leptospira interrogans serovar Lai str. 56601] gi|45599980|gb|AAS69467.1| ribosome recycling factor [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 184 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 80/177 (45%), Positives = 121/177 (68%), Gaps = 2/177 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + +K +M TI +KKD T+RTGR +PS+++ ++V+ YG+ P+NQ+ N++V EPRML Sbjct: 7 ISGMKTKMDKTIDLVKKDFGTIRTGRANPSLVEDIRVDYYGNQTPINQLGNISVPEPRML 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+S +DK ++ +E+ I S LGL P +G V+RI +PE T ERR L KV + +E+ K Sbjct: 67 VISPYDKGIMKDIEKAIQTSGLGLQPTNDGVVIRIVIPELTGERRKELAKVVKSKSEEKK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +++RNIRRD M+ LKK + S+D + S+++ IQKITDS I I + EK+KEI Sbjct: 127 VAIRNIRRDAMEDLKKH--TEGMSQDEIKSVQDQIQKITDSYIDKISALTAEKEKEI 181 >gi|229824928|ref|ZP_04450997.1| hypothetical protein GCWU000182_00277 [Abiotrophia defectiva ATCC 49176] gi|229790931|gb|EEP27045.1| hypothetical protein GCWU000182_00277 [Abiotrophia defectiva ATCC 49176] Length = 184 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 75/186 (40%), Positives = 121/186 (65%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M++ L +D+M TI+ L ++ +T+R GR +P +LD +KV+ YG PL VAN++V Sbjct: 1 MSEATKL--YEDKMNKTINNLNEEYITIRAGRANPHILDKIKVDYYGQPSPLQSVANISV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R++ + W+ ++ ++E+ I+ +NLG+ P +G+ +R+ PE TEERR L K Sbjct: 59 PEARIIQIQPWEAGLIKAIEKEINMANLGVVPNNDGKSIRLVFPELTEERRKELSKDIKK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE++KI++RNIRRD ++H KK +K+ + +ED + LE++IQKITD I+ E+K Sbjct: 119 KAEQAKIAIRNIRRDAVEHFKKQQKANEITEDDLKDLEDEIQKITDKFSDEIEKMTEDKT 178 Query: 181 KEIMHF 186 KEIM Sbjct: 179 KEIMTV 184 >gi|312869006|ref|ZP_07729183.1| ribosome recycling factor [Lactobacillus oris PB013-T2-3] gi|311095432|gb|EFQ53699.1| ribosome recycling factor [Lactobacillus oris PB013-T2-3] Length = 186 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 72/179 (40%), Positives = 117/179 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + K +M + L++ + +R G+ + S+L+ VKVE YG+ PLNQVA++T+ E R L Sbjct: 8 LNDAKQKMKKSGDALQRSLADIRAGQANASLLNSVKVEYYGAPTPLNQVASITIPEARQL 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +D+ ++ +E+ I+ SNLGL P +G +R+ +P+ TE+RR LVK A EKSK Sbjct: 68 LITPYDESILEEIEKSIYASNLGLTPQNDGSAIRLIIPQLTEDRRKELVKDVKAELEKSK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++VRN+RR+ MD LKK K+G ++D LE +Q TD+ IKN++ K+KE++ Sbjct: 128 VAVRNVRREAMDDLKKGNKNGDFNDDEFHDLEKQVQNETDAGIKNLEDIAAAKEKELLQ 186 >gi|292492491|ref|YP_003527930.1| ribosome recycling factor [Nitrosococcus halophilus Nc4] gi|291581086|gb|ADE15543.1| ribosome recycling factor [Nitrosococcus halophilus Nc4] Length = 185 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 77/179 (43%), Positives = 109/179 (60%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + RM ++ LK+ LR R S+LD + V YG++VPLNQVANV V + R L Sbjct: 7 ADAAQRMQKSLEALKQAFAKLRANRAHTSLLDHITVSYYGTNVPLNQVANVAVEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+ W+K+MV ++E+ I S LGLNP+ G V+RIP+P TEERR +V+V AE +++ Sbjct: 67 VTPWEKQMVPAIEKAIRNSELGLNPVTAGMVIRIPLPPLTEERRREMVRVVRQEAEAARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD +K+ K + SED E IQKITDS I +D K++++M Sbjct: 127 AVRNIRRDSNQTIKELVKEKEISEDDQHRAEEAIQKITDSNIAKVDEILAAKERDLMEV 185 >gi|302386239|ref|YP_003822061.1| ribosome recycling factor [Clostridium saccharolyticum WM1] gi|302196867|gb|ADL04438.1| ribosome recycling factor [Clostridium saccharolyticum WM1] Length = 184 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 76/181 (41%), Positives = 115/181 (63%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 LQ +D+M T+ L+ + MT+R GR +P +LD ++V+ YG+ P+ QV NV++ E RM Sbjct: 4 SLQVYEDKMNKTLKALENEFMTIRAGRANPHVLDKIRVDYYGTPTPIQQVGNVSIPEARM 63 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 +V+ W+K ++ ++E+ I S LG+NP +G V+R+ PE TEERR LVK E + Sbjct: 64 IVIQPWEKSLLKAIEKAILTSELGINPTNDGNVIRLVFPELTEERRKDLVKDVKKKGEAA 123 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 KI++RNIRRD D KK K+ + SED A E+ IQK+TD I ++ EEK K+++ Sbjct: 124 KIAIRNIRRDANDAFKKQLKAEEISEDEQAEAEDQIQKLTDKMIDKVEKSVEEKSKDLLT 183 Query: 186 F 186 Sbjct: 184 V 184 >gi|257453214|ref|ZP_05618513.1| ribosome recycling factor (RRF) [Fusobacterium sp. 3_1_5R] gi|317059748|ref|ZP_07924233.1| ribosome recycling factor [Fusobacterium sp. 3_1_5R] gi|313685424|gb|EFS22259.1| ribosome recycling factor [Fusobacterium sp. 3_1_5R] Length = 189 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 80/179 (44%), Positives = 116/179 (64%), Gaps = 2/179 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q +++M TI K+ ++R GR S +MLD +KVE YGS +PLNQVA V+ E R+L Sbjct: 8 IQECQNKMQKTIEATKEKFTSIRAGRASVAMLDNIKVEQYGSDMPLNQVATVSAPEARLL 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK M+ +E+ I +NLG+NP +G+V+R+ +PE T +RR VK+A AE K Sbjct: 68 VIDPWDKTMIPKIEKAILAANLGMNPNNDGRVVRLVMPELTADRRKEYVKLAKKEAENGK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGK--ASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 I+VRNIR+D LKK K + SED + E ++Q +TD TIK++D +K+KEI Sbjct: 128 IAVRNIRKDMNTALKKIEKDKESGMSEDELKRFEAEVQTLTDKTIKDLDDLLAKKEKEI 186 >gi|227878826|ref|ZP_03996733.1| ribosome recycling factor [Lactobacillus crispatus JV-V01] gi|256843348|ref|ZP_05548836.1| ribosome recycling factor [Lactobacillus crispatus 125-2-CHN] gi|256849833|ref|ZP_05555264.1| ribosome-recycling factor [Lactobacillus crispatus MV-1A-US] gi|262046921|ref|ZP_06019881.1| ribosome recycling factor [Lactobacillus crispatus MV-3A-US] gi|293381207|ref|ZP_06627215.1| ribosome recycling factor [Lactobacillus crispatus 214-1] gi|295693144|ref|YP_003601754.1| ribosome-recycling factor [Lactobacillus crispatus ST1] gi|227861574|gb|EEJ69186.1| ribosome recycling factor [Lactobacillus crispatus JV-V01] gi|256614768|gb|EEU19969.1| ribosome recycling factor [Lactobacillus crispatus 125-2-CHN] gi|256713322|gb|EEU28312.1| ribosome-recycling factor [Lactobacillus crispatus MV-1A-US] gi|260572903|gb|EEX29463.1| ribosome recycling factor [Lactobacillus crispatus MV-3A-US] gi|290922247|gb|EFD99241.1| ribosome recycling factor [Lactobacillus crispatus 214-1] gi|295031250|emb|CBL50729.1| Ribosome-recycling factor [Lactobacillus crispatus ST1] Length = 185 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 71/177 (40%), Positives = 118/177 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K +M D+I +K + ++R G + ++LD V+VE YG+ PL Q++++T+ EPR+L Sbjct: 6 IEKAKTKMTDSIKVYQKRLASIRAGVANAALLDNVQVEYYGAPTPLTQMSSITIPEPRVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +D+ + +E + SNLGL P +G+V+R+ +P+ T ERR + K +AE++K Sbjct: 66 LITPYDQNSLDDIEHALLASNLGLTPANDGKVIRLVIPQLTGERREEIAKEVGKFAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 I+VRN+RRD M+ LKK K+G +ED +LE +QK+TD K ID +EK+KEI Sbjct: 126 IAVRNVRRDAMNTLKKDEKNGDITEDEQRNLEKQVQKVTDDAAKQIDQLADEKRKEI 182 >gi|227892608|ref|ZP_04010413.1| ribosome recycling factor [Lactobacillus ultunensis DSM 16047] gi|227865593|gb|EEJ73014.1| ribosome recycling factor [Lactobacillus ultunensis DSM 16047] Length = 185 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 68/177 (38%), Positives = 118/177 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ ++ M +I +K + ++R G + ++LD V+VE YG+ PL Q++++T+ EPR+L Sbjct: 6 IKKAQENMDKSIKVYQKKLASIRAGVANAALLDNVEVEYYGAPTPLTQMSSITIPEPRVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +D+ + ++E + SNLGL P +G+V+R+ +P+ T ERR + K YAE++K Sbjct: 66 LITPYDQSSLDNIEHALLASNLGLTPANDGKVIRLVIPQLTGERREEIAKEVGKYAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 I+VRN+RRD M+ LK+ K+G +ED +LE +QK+TD K ID ++K+KEI Sbjct: 126 IAVRNVRRDAMNSLKRDEKNGDITEDEQRNLEKQVQKVTDDAAKKIDQLADDKRKEI 182 >gi|219683778|ref|YP_002470161.1| ribosome recycling factor [Bifidobacterium animalis subsp. lactis AD011] gi|254809492|sp|B8DUA6|RRF_BIFA0 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|219621428|gb|ACL29585.1| ribosome recycling factor [Bifidobacterium animalis subsp. lactis AD011] Length = 184 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 68/186 (36%), Positives = 110/186 (59%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M V+D K++M ++ K++ +RTGR +P++L+ + VE YG+ PL VA + V Sbjct: 1 MANVVD--QSKEQMKKSVESTKENFAGIRTGRANPALLNGIVVEYYGAPTPLKHVATIGV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPR L V+ +D +VE+ + +S+LG +P G + + +PE TE+RR VK+A + Sbjct: 59 PEPRTLSVTPFDPSQANAVEKALRDSDLGASPRRNGSAILLTMPELTEDRRKEYVKLAKS 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE K++VRNIRR + + K+ K G+ ED L ++ K+T +T +D+ E K+ Sbjct: 119 KAEDGKVAVRNIRRKSKEAIDKAVKDGEMGEDEGDRLLKELDKVTKATTDELDALLEAKQ 178 Query: 181 KEIMHF 186 KEIM Sbjct: 179 KEIMEV 184 >gi|296127609|ref|YP_003634861.1| ribosome recycling factor [Brachyspira murdochii DSM 12563] gi|296019425|gb|ADG72662.1| ribosome recycling factor [Brachyspira murdochii DSM 12563] Length = 182 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 80/176 (45%), Positives = 113/176 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ KDRM IS L+ D+ +RTGR + S+LD VKVEAYGS++PL QV NV+ + R ++ Sbjct: 4 ESYKDRMEKAISSLQNDLKGIRTGRANASILDGVKVEAYGSNMPLKQVGNVSTPDSRTIM 63 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +DK +V+ +E+ I +++LG NP +G +RI VPE T+ERR L K E++KI Sbjct: 64 IQPFDKGLVSDIEKAILKADLGFNPFNDGGNIRIVVPELTKERREELKKGVRHRGEEAKI 123 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +VRNIRRD D +KK K +ED S E IQ TD+ IK ID K+KE+ Sbjct: 124 AVRNIRRDENDKIKKELKDKTITEDESKSQEKRIQNETDAYIKKIDEMINTKEKEL 179 >gi|227904185|ref|ZP_04021990.1| ribosome recycling factor [Lactobacillus acidophilus ATCC 4796] gi|227868204|gb|EEJ75625.1| ribosome recycling factor [Lactobacillus acidophilus ATCC 4796] Length = 185 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 73/177 (41%), Positives = 118/177 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +D MG +I +K + ++R G + ++LD V+VE YG+ PL Q+++VT+ EPR+L Sbjct: 6 IKKAQDNMGKSIKVYQKKLASVRAGVANAALLDNVQVEYYGAPTPLTQMSSVTIPEPRVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +D+ + +E + SNLGL P +G+V+R+ +P+ T ERR + K YAE++K Sbjct: 66 LITPYDQNSLDDIEHALLASNLGLTPANDGKVIRLVIPQLTSERREEIAKEVGKYAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 I+VRN+RR+ MD LKK K+G +ED +LE +QK+TD K ID +EK+KEI Sbjct: 126 IAVRNVRREAMDSLKKEEKNGDITEDEQRNLEKQVQKVTDDATKKIDQLADEKRKEI 182 >gi|86156709|ref|YP_463494.1| ribosome recycling factor [Anaeromyxobacter dehalogenans 2CP-C] gi|123499108|sp|Q2IMM1|RRF_ANADE RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|85773220|gb|ABC80057.1| ribosome recycling factor [Anaeromyxobacter dehalogenans 2CP-C] Length = 188 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 72/188 (38%), Positives = 114/188 (60%), Gaps = 2/188 (1%) Query: 1 MNQVID--LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 M + D L ++ R+ T+ L+ D+ +RTGR S +LD V+V+ YG+ PLNQVA + Sbjct: 1 MGTIADDILGDLHGRILKTLDQLRTDLSAVRTGRASLHLLDNVRVDYYGTPTPLNQVATM 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 +V E R++VV W+K M+ +E+ I E+NLGLNP+ + ++R+P+P TEERR +VK Sbjct: 61 SVPEARLIVVKPWEKSMIPPIEKAIREANLGLNPMSDKDLVRVPIPALTEERRKEIVKQV 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 E+ KI+VRN+RR+ + ++ + K G S D +QK TD +K ID Sbjct: 121 KHKGEEHKIAVRNVRREAKELIEVAEKDGDISGDDAEKALEKMQKETDDGVKKIDEIVAA 180 Query: 179 KKKEIMHF 186 K+K+++ Sbjct: 181 KEKDVLQV 188 >gi|157364644|ref|YP_001471411.1| ribosome recycling factor [Thermotoga lettingae TMO] gi|166991560|sp|A8F863|RRF_THELT RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|157315248|gb|ABV34347.1| ribosome recycling factor [Thermotoga lettingae TMO] Length = 185 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 114/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++N +DRM + + +++ +RTGR SP++L+ +KV+ YG+ P++Q+A V + E R L Sbjct: 6 VKNAEDRMNKAVEKISEELRKMRTGRPSPAILEEIKVDYYGAQTPISQLATVNITEDRAL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WD+ +++S+E+ I S+LGL P +G V+R+ P T E+R K A AE+ K Sbjct: 66 IIKPWDRSVLSSIEKAIFASDLGLTPQNDGNVIRLTFPTPTTEQRQKWAKKAKEIAEQGK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIRRD + LK K GK SED +E +IQ +TD I ID E+K+KEIM Sbjct: 126 IAIRNIRRDILKELKGDTKDGKISEDDEKRIEKEIQDLTDKKILEIDKLLEKKEKEIMEV 185 >gi|110636998|ref|YP_677205.1| ribosome recycling factor [Cytophaga hutchinsonii ATCC 33406] gi|123163830|sp|Q11XK1|RRF_CYTH3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|110279679|gb|ABG57865.1| ribosome recycling factor [Cytophaga hutchinsonii ATCC 33406] Length = 186 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 74/187 (39%), Positives = 111/187 (59%), Gaps = 2/187 (1%) Query: 1 MNQV-IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVT 59 M ++ + L + KD M I + ++ +R G+ SP+M D + V+ YGS PL QVA V+ Sbjct: 1 MEEINLYLDDAKDSMQKAIKHTELELSKIRAGKASPNMFDGIMVDYYGSSTPLAQVATVS 60 Query: 60 VLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 V EPR + + ++K MV ++E+ I ++N+G NP +G V+RI VP TEERR LVK Sbjct: 61 VPEPRSITIKAYEKSMVTTIEKAIRDANMGFNPQNDGDVIRINVPPLTEERRRDLVKQTK 120 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 A E K+ +R IR++ D LKK K G ASED V E +Q +T+ T +++ K Sbjct: 121 AEGESGKVRIRKIRQETNDELKKLLKDG-ASEDEVKRAEEVVQALTNDTSAKLEALIAAK 179 Query: 180 KKEIMHF 186 +KE+M Sbjct: 180 EKELMTV 186 >gi|293189848|ref|ZP_06608562.1| ribosome recycling factor [Actinomyces odontolyticus F0309] gi|292821263|gb|EFF80208.1| ribosome recycling factor [Actinomyces odontolyticus F0309] Length = 185 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 59/180 (32%), Positives = 101/180 (56%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + + +RTGR + SM + + V+ YG+ P+ Q+A+ + E R + Sbjct: 6 LLEAEEKMDKAVEAASHEFSNIRTGRATSSMFEQLLVDYYGAPTPMQQLASFQIPEARTV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +D+ + R + ES+LG+NP +G V+R+ +P TEERR VK A + AE + Sbjct: 66 LISPFDRTATQEIIRTLRESDLGVNPTDDGNVVRVVLPALTEERRKEYVKQAKSKAEDGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +SVR +RR D L + +K G+ASED V E + +T + + ID K+ E++ Sbjct: 126 VSVRGVRRKAKDQLDRLKKDGEASEDDVERAEKQLDGLTKAHTEQIDKMLATKESELLTI 185 >gi|256544891|ref|ZP_05472262.1| ribosome recycling factor [Anaerococcus vaginalis ATCC 51170] gi|256399390|gb|EEU12996.1| ribosome recycling factor [Anaerococcus vaginalis ATCC 51170] Length = 185 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 72/180 (40%), Positives = 109/180 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +++ + M + + +R GR + S+LD + YG+ P+NQ A ++ EPR+L Sbjct: 6 IKDTEASMKKACESFEIRISKIRAGRANDSILDGITFSYYGTQTPINQAATISTPEPRLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK + +E+ I++S+LG+NP +G+V+R+P P TEERR L K Y+E SK Sbjct: 66 VIKPWDKSNIKEIEKAINKSDLGINPQNDGEVIRLPFPALTEERRKELTKQVSEYSEDSK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I +RNIRRD MD KK+ KS +ED + S+E DIQKIT I ++ E K KE++ Sbjct: 126 IQIRNIRRDSMDIAKKAEKSADLTEDDLFSIEEDIQKITKKYIDKVEKTVESKNKELLEV 185 >gi|223038376|ref|ZP_03608670.1| ribosome recycling factor [Campylobacter rectus RM3267] gi|222880233|gb|EEF15320.1| ribosome recycling factor [Campylobacter rectus RM3267] Length = 185 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 67/186 (36%), Positives = 112/186 (60%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ + K+ I LK+D TLRTG+V+ S++D + V+ YGS PLNQVA + Sbjct: 2 LNEIY--KKQKEHSDKCIEGLKRDFSTLRTGKVNISIVDNIYVDYYGSQTPLNQVATILT 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + + ++ W+K M+ ++ I +N+G+NP +G+ +++ P T E+R K A A Sbjct: 60 SDASTISITPWEKPMLKTITAAISAANIGVNPNNDGESVKLFFPPMTVEQRHENAKHAKA 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 + EK+K+S+RNIR+D D +KK K +ED ++++QKITDS IDS +EK+ Sbjct: 120 FGEKAKVSIRNIRKDANDEVKKLEKDKSITEDESKKGQDEVQKITDSYTSKIDSLVKEKE 179 Query: 181 KEIMHF 186 E++ Sbjct: 180 SELLKV 185 >gi|148656147|ref|YP_001276352.1| ribosome recycling factor [Roseiflexus sp. RS-1] gi|166231220|sp|A5UUU9|RRF_ROSS1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|148568257|gb|ABQ90402.1| ribosome recycling factor [Roseiflexus sp. RS-1] Length = 185 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 66/180 (36%), Positives = 110/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ + RM L+ + T+RTGR SP++++ + VEAYG+ +PLNQ+A +TV EPR+L Sbjct: 6 LREAESRMKKATEALRNHLATIRTGRASPALVEHLHVEAYGATLPLNQLATITVPEPRLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +D V ++ + I S LG+ P +G+V+R+ +P+ TE RR L K+ A E+SK Sbjct: 66 VIQPFDANTVKAISKAIMNSELGITPTDDGRVIRLAIPQLTEARRKELTKLVRARVEESK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIRR+ ++ L+ SED + +Q++TD ++ +D K+ E+M Sbjct: 126 IALRNIRREALEDLRDLEHEKMISEDEHRRAQEKLQELTDRFVRELDHIGATKEAEVMEI 185 >gi|325957056|ref|YP_004292468.1| ribosome recycling factor [Lactobacillus acidophilus 30SC] gi|325333621|gb|ADZ07529.1| ribosome recycling factor [Lactobacillus acidophilus 30SC] Length = 185 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 68/177 (38%), Positives = 116/177 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ ++ M +I +K + ++R G + ++LD V+V+ YG+ PL Q++++T+ EPR+L Sbjct: 6 IKKAQENMDKSIKVYQKKLASIRAGVANAALLDNVQVQYYGAPTPLTQMSSITIPEPRVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +D+ + +E + SNLGL P +G+V+R+ +P+ T ERR + K YAE++K Sbjct: 66 LITPYDQNSLDDIEHALLASNLGLTPANDGKVIRLVIPQLTGERREEIAKEVGKYAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 I+VRN+RRD M+ LK+ K G +ED +LE +QK+TD K ID +EK+KEI Sbjct: 126 IAVRNVRRDAMNSLKREEKDGDITEDEQRNLEKQVQKVTDDAAKKIDQLADEKRKEI 182 >gi|301059177|ref|ZP_07200117.1| ribosome recycling factor [delta proteobacterium NaphS2] gi|300446725|gb|EFK10550.1| ribosome recycling factor [delta proteobacterium NaphS2] Length = 185 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 71/186 (38%), Positives = 119/186 (63%), Gaps = 1/186 (0%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M + I L ++ +M + LKKD +RTGR S ++LD +KV+ Y + +P++QVA + Sbjct: 1 MKEEI-LAELRQKMNKAVEALKKDFRKIRTGRASTALLDGIKVDCYDTQMPIDQVATIAA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R++ + WD+ ++ ++E+ I +S LGL P+ +G+++RI +P TEERR L K+A Sbjct: 60 PESRLITIQPWDQSIMGNLEKSILKSELGLTPMNDGKMIRISIPPLTEERRKELAKLARK 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE +KIS+RN RR+ D K+ + + SED + ++D+QKITD I+ +D +K+ Sbjct: 120 MAEDNKISIRNFRREANDMFKELKAEKEISEDELFKSQDDVQKITDEFIQKVDETTAKKE 179 Query: 181 KEIMHF 186 +EI+ F Sbjct: 180 QEIIEF 185 >gi|116072186|ref|ZP_01469453.1| ribosome releasing factor [Synechococcus sp. BL107] gi|116064708|gb|EAU70467.1| ribosome releasing factor [Synechococcus sp. BL107] Length = 182 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 63/179 (35%), Positives = 106/179 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++++ M ++ +++ T+RTGR + S+LD + VE YG+ PL +A ++ + + + Sbjct: 4 KDLEASMHKSLEATQRNFNTIRTGRANSSLLDRISVEYYGAETPLKSLATLSTPDSQTIQ 63 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +D +AS+E+ I S LG P +G+V+RI VP TEERR K+A YAE+ K+ Sbjct: 64 IQPFDISALASIEKAIAMSELGFTPNNDGKVIRINVPPLTEERRKEFCKLASRYAEEGKV 123 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD +D +KK K G SED ++ IQK+ D I ++ EK+ I+ Sbjct: 124 ALRNLRRDAIDKVKKQEKDGDFSEDQSRDEQDSIQKVLDKNIVALEKQLAEKEAAILKV 182 >gi|259501578|ref|ZP_05744480.1| ribosome recycling factor [Lactobacillus iners DSM 13335] gi|302191448|ref|ZP_07267702.1| ribosome recycling factor [Lactobacillus iners AB-1] gi|309804225|ref|ZP_07698302.1| ribosome recycling factor [Lactobacillus iners LactinV 11V1-d] gi|309805502|ref|ZP_07699547.1| ribosome recycling factor [Lactobacillus iners LactinV 09V1-c] gi|309807192|ref|ZP_07701166.1| ribosome recycling factor [Lactobacillus iners LactinV 03V1-b] gi|309808808|ref|ZP_07702693.1| ribosome recycling factor [Lactobacillus iners LactinV 01V1-a] gi|309809446|ref|ZP_07703304.1| ribosome recycling factor [Lactobacillus iners SPIN 2503V10-D] gi|312875782|ref|ZP_07735774.1| ribosome recycling factor [Lactobacillus iners LEAF 2053A-b] gi|315653424|ref|ZP_07906346.1| ribosome recycling factor [Lactobacillus iners ATCC 55195] gi|325911800|ref|ZP_08174204.1| ribosome recycling factor [Lactobacillus iners UPII 143-D] gi|325913480|ref|ZP_08175846.1| ribosome recycling factor [Lactobacillus iners UPII 60-B] gi|329919873|ref|ZP_08276811.1| ribosome recycling factor [Lactobacillus iners SPIN 1401G] gi|259167096|gb|EEW51591.1| ribosome recycling factor [Lactobacillus iners DSM 13335] gi|308163628|gb|EFO65898.1| ribosome recycling factor [Lactobacillus iners LactinV 11V1-d] gi|308165153|gb|EFO67391.1| ribosome recycling factor [Lactobacillus iners LactinV 09V1-c] gi|308166413|gb|EFO68618.1| ribosome recycling factor [Lactobacillus iners LactinV 03V1-b] gi|308167934|gb|EFO70067.1| ribosome recycling factor [Lactobacillus iners LactinV 01V1-a] gi|308170118|gb|EFO72153.1| ribosome recycling factor [Lactobacillus iners SPIN 2503V10-D] gi|311088686|gb|EFQ47138.1| ribosome recycling factor [Lactobacillus iners LEAF 2053A-b] gi|315489349|gb|EFU78989.1| ribosome recycling factor [Lactobacillus iners ATCC 55195] gi|325476306|gb|EGC79468.1| ribosome recycling factor [Lactobacillus iners UPII 143-D] gi|325477249|gb|EGC80395.1| ribosome recycling factor [Lactobacillus iners UPII 60-B] gi|328936963|gb|EGG33393.1| ribosome recycling factor [Lactobacillus iners SPIN 1401G] Length = 185 Score = 218 bits (557), Expect = 2e-55, Method: Composition-based stats. Identities = 75/183 (40%), Positives = 123/183 (67%), Gaps = 1/183 (0%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ VI ++ K M +IS +K++ +R G + S+LD +KVE YG PL Q++++T+ Sbjct: 1 MSNVI-IEKAKANMSKSISVFEKELGGIRAGVANASLLDGIKVEYYGVPTPLTQMSSITI 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R+L+++ +DK + ++E I S+LG+ P +G V+RI +P+ T ERR+ + K Sbjct: 60 PEARVLMITPFDKTTLNNIEHAILASDLGITPANDGSVVRIVIPQLTGERRIEIAKKVGK 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE++KI++RNIRR+GMD LKK +K G+ +ED + E D+QKITD+ K++D+ ++K Sbjct: 120 LAEQAKIAIRNIRREGMDALKKQQKDGEITEDDLHKFEKDMQKITDNATKDVDALADKKS 179 Query: 181 KEI 183 KEI Sbjct: 180 KEI 182 >gi|7404451|sp|P37706|RRFC_DAUCA RecName: Full=Ribosome-recycling factor, chloroplastic; Short=RRF; AltName: Full=Nuclear located protein D2; AltName: Full=Ribosome-releasing factor, chloroplastic; Flags: Precursor Length = 227 Score = 218 bits (557), Expect = 2e-55, Method: Composition-based stats. Identities = 69/179 (38%), Positives = 111/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +++K+RM TI +K ++RT R +P MLD +KVE YG+ L +A ++ + L+ Sbjct: 49 KSVKERMEKTIENVKASFNSIRTXRSNPDMLDKIKVEYYGTPTSLKSIAQISTPDSSSLL 108 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+ +DK + +E+ I S+LG+ P +G V+R+ +P+ T +RR L K+ AE+ K+ Sbjct: 109 VNPYDKSSLKDIEKAIVNSDLGITPNNDGDVIRLSIPQLTADRRKELSKIVAKQAEEGKV 168 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD + K K K SED V L +D+QK+ D IK +DS F++K+KE+M Sbjct: 169 ALRNIRRDAIKSYDKLEKEKKLSEDNVKDLSSDLQKVIDEYIKKVDSIFKQKEKELMTV 227 >gi|262066278|ref|ZP_06025890.1| ribosome recycling factor [Fusobacterium periodonticum ATCC 33693] gi|291379973|gb|EFE87491.1| ribosome recycling factor [Fusobacterium periodonticum ATCC 33693] Length = 190 Score = 218 bits (557), Expect = 2e-55, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 115/179 (64%), Gaps = 2/179 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +++M TI +K+ ++R GR + +MLD VKVE YGS VPLNQ+ +V+ E R+L Sbjct: 9 IKECEEKMLKTIESVKERFTSIRAGRANVAMLDGVKVENYGSDVPLNQIGSVSAPEARLL 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK ++ +E+ + +NLG+ P +G+V+R+ +PE T +RR VK+A AE K Sbjct: 69 VIDPWDKTLIPKIEKALLAANLGMTPNNDGRVIRLVLPELTADRRKEYVKLAKNEAENGK 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGK--ASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 I+VRNIR+D +HLKK K + SED + E +Q +TD IK ID +K+KEI Sbjct: 129 IAVRNIRKDINNHLKKLEKDKENPISEDELKKEETHVQTLTDKYIKEIDELLAKKEKEI 187 >gi|224499896|ref|ZP_03668245.1| ribosome recycling factor [Listeria monocytogenes Finland 1988] Length = 172 Score = 218 bits (557), Expect = 2e-55, Method: Composition-based stats. Identities = 69/165 (41%), Positives = 110/165 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K++M L + + T+R GR + S+LD + V+ YG+ P+NQ+A+++V E RML Sbjct: 6 LSKSKEKMEKAEQALTRQLGTIRAGRANASLLDRLSVDYYGAATPVNQMASISVPEARML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK ++ +E+ I +S+LGL P +G VLR+ +P+ TEERR LVK AE++K Sbjct: 66 LITPYDKTILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKN 171 ++VRNIRR+ + LKK K+G +ED + S D+QK+TD +IK Sbjct: 126 VAVRNIRREANEELKKLEKNGDITEDDLRSYGEDVQKLTDESIKK 170 >gi|88798260|ref|ZP_01113846.1| ribosome recycling factor [Reinekea sp. MED297] gi|88779036|gb|EAR10225.1| ribosome recycling factor [Reinekea sp. MED297] Length = 185 Score = 218 bits (557), Expect = 2e-55, Method: Composition-based stats. Identities = 71/179 (39%), Positives = 104/179 (58%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q + I+ L +RTGR +P++LD + V+ YG+ P+ QVAN+ V + R L Sbjct: 7 QETETHNRKAIAALDDAFNKIRTGRANPAILDKISVDYYGTDTPIKQVANIIVEDGRTLS 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + W+K MV VE+ I +S+LGLNP G +RI +P TEE R +KVA AEK+++ Sbjct: 67 IVPWEKNMVPEVEKAIMKSDLGLNPATAGSNIRIVMPMLTEETRKEFIKVARGEAEKARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RN RRD +K+ K + SED E DIQK+TD+ I +D EK+ ++M Sbjct: 127 SIRNGRRDANSAVKELVKEKELSEDEGKRAEEDIQKLTDAAIAQVDKHLTEKEADLMKV 185 >gi|296274577|ref|YP_003657208.1| ribosome recycling factor [Arcobacter nitrofigilis DSM 7299] gi|296098751|gb|ADG94701.1| ribosome recycling factor [Arcobacter nitrofigilis DSM 7299] Length = 185 Score = 218 bits (557), Expect = 2e-55, Method: Composition-based stats. Identities = 61/186 (32%), Positives = 111/186 (59%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ K++M + I LK+D TLRTG+VS ++LD +K++ YG+ L QV +V Sbjct: 2 LNEIY--SETKEKMDNAIEALKRDYKTLRTGKVSTTILDGIKIDYYGTPTELTQVGSVLA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + +V++ W+K +V +E+ I +N+G+NP +G+V+++ P T ++R K A Sbjct: 60 PDATTIVINPWEKHLVGDIEKAIQNANIGVNPNNDGEVIKLFFPPMTVDQRKESAKQAKG 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 + +K+++RNIR+ D +K K + ++D +++IQKITDS + D F+ K+ Sbjct: 120 MTDDAKVAIRNIRKHANDRVKVLHKDKEITDDENKKAQDEIQKITDSYVTKADDTFKAKE 179 Query: 181 KEIMHF 186 EI+ Sbjct: 180 AEILKV 185 >gi|305665271|ref|YP_003861558.1| ribosome releasing factor [Maribacter sp. HTCC2170] gi|88710025|gb|EAR02257.1| ribosome releasing factor [Maribacter sp. HTCC2170] Length = 185 Score = 218 bits (557), Expect = 2e-55, Method: Composition-based stats. Identities = 76/188 (40%), Positives = 106/188 (56%), Gaps = 5/188 (2%) Query: 1 MNQVID--LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 MN+ I L K+ M I+ L+K+ + +R G+ +P+ML V V+ YGS PL+QVAN+ Sbjct: 1 MNEEIKFILDATKESMDAAITHLEKEFVKIRAGKANPAMLSSVMVDYYGSQTPLSQVANI 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 + R L V W+K M+ +E I +NLG NP+ G + I VP TEERR+ L K A Sbjct: 61 NTPDGRTLSVQPWEKNMLQEIETAIMHANLGFNPMNNGDFVIINVPPLTEERRIQLAKQA 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 A AE +K+ RN R++ +K ASEDM + E D+Q +TD K ID F Sbjct: 121 KAEAEHAKVGARNARQEANKEIKDL---DDASEDMKKNAEMDVQDLTDKYSKKIDDFLAA 177 Query: 179 KKKEIMHF 186 K+ EIM Sbjct: 178 KEAEIMKV 185 >gi|154509155|ref|ZP_02044797.1| hypothetical protein ACTODO_01676 [Actinomyces odontolyticus ATCC 17982] gi|153798789|gb|EDN81209.1| hypothetical protein ACTODO_01676 [Actinomyces odontolyticus ATCC 17982] Length = 185 Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 58/180 (32%), Positives = 101/180 (56%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + + +RTGR + +M + + V+ YG+ P+ Q+A+ + E R + Sbjct: 6 LLEAEEKMDKAVEAASHEFSNIRTGRATSAMFEQLLVDYYGAPTPMQQLASFQIPEARTV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +D+ + R + ES+LG+NP +G V+R+ +P TEERR VK A + AE + Sbjct: 66 LISPFDRTATQEIIRTLRESDLGVNPTDDGNVVRVVLPALTEERRKEYVKQAKSKAEDGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +SVR +RR D L + +K G+ASED V E + +T + + ID K+ E++ Sbjct: 126 VSVRGVRRKAKDQLDRLKKDGEASEDDVERAEKQLDGLTKAHTEQIDKMLATKESELLTI 185 >gi|198283287|ref|YP_002219608.1| ribosome recycling factor [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667967|ref|YP_002425875.1| ribosome recycling factor [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247808|gb|ACH83401.1| ribosome recycling factor [Acidithiobacillus ferrooxidans ATCC 53993] gi|218520180|gb|ACK80766.1| ribosome recycling factor [Acidithiobacillus ferrooxidans ATCC 23270] Length = 186 Score = 218 bits (556), Expect = 3e-55, Method: Composition-based stats. Identities = 66/179 (36%), Positives = 111/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM +I LK ++ LRTGR S +LD V+++ YG+ PL QVA+V+V + R L+ Sbjct: 8 KDSEARMKKSIESLKGELTRLRTGRASAGLLDHVQLDYYGAPTPLAQVASVSVADARSLL 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+ W+K ++ +++ I ++ LGLNP+ +R+P+P +EERR +VKV E +++ Sbjct: 68 VTPWEKNLIPKIDKAIRDAGLGLNPVAGSDNVRVPLPALSEERRKEMVKVVRQEGEGARV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD + +K+ K SED E + QK+TD I +D+ E K+ ++M Sbjct: 128 AIRNIRRDSISQVKELHKQKAISEDEERRAEEEFQKLTDRYIDEVDAVVEAKEADLMEV 186 >gi|255321712|ref|ZP_05362867.1| ribosome recycling factor [Campylobacter showae RM3277] gi|255301192|gb|EET80454.1| ribosome recycling factor [Campylobacter showae RM3277] Length = 185 Score = 218 bits (556), Expect = 3e-55, Method: Composition-based stats. Identities = 68/186 (36%), Positives = 112/186 (60%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ + K+ I LK+D TLRTG+V+ S++D + V+ YGS PLNQVA V Sbjct: 2 LNEIY--KKQKEHSDKCIEGLKRDFTTLRTGKVNISIVDNIYVDYYGSQTPLNQVATVLT 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + + ++ W+K M+ ++ I +N+G+NP +G+ +++ P T E+R K A A Sbjct: 60 SDASTISITPWEKPMLKTITAAISAANIGVNPNNDGESVKLFFPPMTVEQRQENAKHAKA 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 + EK+K+S+RNIR+D D +KK K +ED ++++QKITDS IDS +EK+ Sbjct: 120 FGEKAKVSIRNIRKDANDEVKKLEKDKTITEDESKKGQDEVQKITDSYTSKIDSLVKEKE 179 Query: 181 KEIMHF 186 E++ Sbjct: 180 NELLKV 185 >gi|327183779|gb|AEA32226.1| ribosome recycling factor [Lactobacillus amylovorus GRL 1118] Length = 185 Score = 218 bits (556), Expect = 3e-55, Method: Composition-based stats. Identities = 69/177 (38%), Positives = 116/177 (65%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ ++ M +I +K + ++R G + ++LD V+VE YG+ PL Q++++T+ EPR+L Sbjct: 6 IKKAQENMDKSIKVYQKKLASIRAGVANAALLDNVQVEYYGAPTPLIQMSSITIPEPRVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +D+ + +E + SNLGL P +G+V+R+ +P+ T ERR + K YAE++K Sbjct: 66 LITPYDQNSLDDIEHALLASNLGLTPANDGKVIRLVIPQLTGERREEIAKEVGKYAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 I+VRN+RRD M+ LK+ K G +ED +LE +QK+TD K ID +EK+KEI Sbjct: 126 IAVRNVRRDAMNSLKREEKDGDITEDEQRNLEKQVQKVTDGAAKKIDQLADEKRKEI 182 >gi|255327231|ref|ZP_05368305.1| ribosome recycling factor [Rothia mucilaginosa ATCC 25296] gi|255295511|gb|EET74854.1| ribosome recycling factor [Rothia mucilaginosa ATCC 25296] Length = 185 Score = 218 bits (556), Expect = 3e-55, Method: Composition-based stats. Identities = 55/180 (30%), Positives = 102/180 (56%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++M TI K + +RTGRV+P++ + E YG+ PL Q+ + V + R + Sbjct: 6 LAEAGEKMEKTIEATKTEFAKVRTGRVNPAIFSGLTAEYYGAPTPLQQLVSFNVEDARTV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + +D +A++E+ + +S+LG+NP +G +R+ +PE T ERR K+ ++ AE+S+ Sbjct: 66 KIVPFDVTALAAIEKALRDSDLGVNPSNDGAAIRVVMPEMTAERRKEYTKLVNSKAEESR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+RN+RR + K K + ED A E ++ +T I +D+ ++ K+ E++ Sbjct: 126 VSIRNVRRHAKTAIDKLVKDSEIGEDEGARAEKELDALTKKHIDQVDALYKHKEAELLEV 185 >gi|119717464|ref|YP_924429.1| ribosome recycling factor [Nocardioides sp. JS614] gi|166230809|sp|A1SLQ7|RRF_NOCSJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|119538125|gb|ABL82742.1| ribosome recycling factor [Nocardioides sp. JS614] Length = 185 Score = 218 bits (556), Expect = 3e-55, Method: Composition-based stats. Identities = 56/180 (31%), Positives = 105/180 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +M ++ +++ +R GRV+PSM + + V+ YGS PL Q+A+ T E R++ Sbjct: 6 LNEADGKMDKSVEATREEFAAIRAGRVNPSMFNKIVVDYYGSPTPLQQLASFTAPEARII 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +D+ + ++ + I +S+LG+NP +G+V+R PE TEERR +K++ AE+ + Sbjct: 66 LIAPYDQGAMHNILKAIRDSDLGVNPADDGKVIRCVFPELTEERRKEYIKISRHKAEEGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RR HL++ K G+ +D + E + +T ID + K+ E++ Sbjct: 126 VAVRNLRRTAKQHLERLEKDGEVGQDDLTGAEKRLDGLTKKHTDAIDEMLKHKEAELLEV 185 >gi|222100166|ref|YP_002534734.1| Ribosome recycling factor [Thermotoga neapolitana DSM 4359] gi|254809538|sp|B9K8T5|RRF_THENN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|221572556|gb|ACM23368.1| Ribosome recycling factor [Thermotoga neapolitana DSM 4359] Length = 185 Score = 218 bits (556), Expect = 3e-55, Method: Composition-based stats. Identities = 74/180 (41%), Positives = 120/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K++M T+ ++ ++ +RTG+ SP++L+ +KV+ YG P+NQ+A ++V E R L Sbjct: 6 IKEAKEKMKKTLEKIEDELKKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISVSEERTL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WD+ +++ +E+ I+ S+LGLNP+ +G V+R+ P T E+R VK A E+ K Sbjct: 66 VIKPWDRSVLSLIEKAINASDLGLNPVNDGNVIRLVFPTPTTEQREKWVKKAKEIVEEGK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIRR+ M +K+ +K G ED LEN++QK+TD I+ +D FE KKKEIM F Sbjct: 126 IAIRNIRREIMKKIKEDQKEGNIPEDDARRLENEVQKLTDEFIEKLDEVFEIKKKEIMEF 185 >gi|325955634|ref|YP_004239294.1| ribosome-recycling factor [Weeksella virosa DSM 16922] gi|323438252|gb|ADX68716.1| Ribosome-recycling factor [Weeksella virosa DSM 16922] Length = 184 Score = 218 bits (556), Expect = 3e-55, Method: Composition-based stats. Identities = 74/180 (41%), Positives = 107/180 (59%), Gaps = 3/180 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + K++M T+ L LR G+ SP+ML VK++ YGS PL+QVAN+ + + Sbjct: 8 IAQAKEQMQKTMEHLDNAFGKLRAGKASPAMLSTVKIDYYGSVTPLSQVANINTPDAMTI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V W++ ++ +E+ I SNLG P G ++ I +P TEERR L K+A A AE +K Sbjct: 68 SVQPWERNLIGEIEKAIINSNLGFAPSNNGDMIIINIPPLTEERRKELSKLAKAEAEHAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+RN R+D ++LK SED+V ENDIQ +TD+ IKNID F +K+ EIM Sbjct: 128 VSIRNARKDANNNLKNI---KDISEDVVKGYENDIQDLTDNYIKNIDVAFAKKESEIMKV 184 >gi|229820990|ref|YP_002882516.1| ribosome recycling factor [Beutenbergia cavernae DSM 12333] gi|259494534|sp|C5BWT8|RRF_BEUC1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|229566903|gb|ACQ80754.1| ribosome recycling factor [Beutenbergia cavernae DSM 12333] Length = 185 Score = 218 bits (556), Expect = 3e-55, Method: Composition-based stats. Identities = 58/180 (32%), Positives = 107/180 (59%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +D+M + + ++ +RTGR + ++ + V+ YG+ PL Q+A +T+ E R++ Sbjct: 6 LLEAEDKMDKAVEVARDELGAIRTGRANAALFQKILVDYYGAPTPLQQLAGITIPEARVI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +D+ + +E+ + S+LG+NP +G V+RI +P+ TEERR VK+A E ++ Sbjct: 66 LINPYDRGAASEIEKALRASDLGVNPSDDGNVIRIVLPQLTEERRREYVKLAKGKGEDAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +SVR +RR D L + + G+A ED VA E +++ T S + ID K++E++ Sbjct: 126 VSVRAVRRKAKDELDRIVRDGEAGEDEVARAEKELELATKSHVDAIDDLLSHKERELLEV 185 >gi|213962598|ref|ZP_03390860.1| ribosome recycling factor [Capnocytophaga sputigena Capno] gi|213954924|gb|EEB66244.1| ribosome recycling factor [Capnocytophaga sputigena Capno] Length = 184 Score = 218 bits (556), Expect = 3e-55, Method: Composition-based stats. Identities = 70/188 (37%), Positives = 108/188 (57%), Gaps = 6/188 (3%) Query: 1 MNQVID--LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 MN+ I+ L + M + + L K + +R G+ SP M+ V V+ YG+ PL+QVANV Sbjct: 1 MNEEINIILDTTNEAMQEALQHLDKALGNIRAGKASPQMVSSVMVDYYGAQTPLSQVANV 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 + + R + + W+K+M+ +E+ I +NLG NP+ G+++ I VP TEERR LVK A Sbjct: 61 SAPDSRTISIQPWEKKMIQPIEKAIQIANLGFNPMNNGEMVIITVPPLTEERRRELVKQA 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 E +KISVRN R+D +KK + S+D+ E +QK+TD IK ++ Sbjct: 121 KGEGEDAKISVRNARQDANKEIKKV----ETSDDIKKDAEERVQKLTDKYIKKVEEVLAA 176 Query: 179 KKKEIMHF 186 K+ EI+ Sbjct: 177 KEAEILKV 184 >gi|289706653|ref|ZP_06503001.1| ribosome recycling factor [Micrococcus luteus SK58] gi|289556573|gb|EFD49916.1| ribosome recycling factor [Micrococcus luteus SK58] Length = 185 Score = 218 bits (556), Expect = 3e-55, Method: Composition-based stats. Identities = 64/180 (35%), Positives = 110/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 LQ+ +++M TI ++D ++RTGR +P + V V+ YGS PL Q+A+ T + R L Sbjct: 6 LQSAEEQMDRTIEATREDFASVRTGRANPGLYSKVMVDYYGSFTPLQQLASFTTTDARTL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +D+ + ++E+ + ES +G NP +G+V+RI +PE T ERR VK+ + AE+ K Sbjct: 66 LITPFDQSALRNIEKALSESEVGANPSNDGKVIRIVMPELTAERRKEYVKLVKSKAEEHK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ISVRN RR + + K+ K G+ ED A E ++ +T ++ ID + K++E++ Sbjct: 126 ISVRNARRKAKEAMDKAVKDGEVGEDEGARGEKELDALTKRHVELIDEMAKNKEQELLEV 185 >gi|227484637|ref|ZP_03914953.1| ribosome recycling factor [Anaerococcus lactolyticus ATCC 51172] gi|227237357|gb|EEI87372.1| ribosome recycling factor [Anaerococcus lactolyticus ATCC 51172] Length = 186 Score = 217 bits (555), Expect = 4e-55, Method: Composition-based stats. Identities = 73/179 (40%), Positives = 114/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + + M T+ +K + T++ GR + ++LD + YG+ P+NQ A V++ E R+LV Sbjct: 8 KETEVGMQKTVDSFEKRIATIKAGRATEAILDGITFSYYGTETPINQAATVSIPEARLLV 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + WDK + +E+ I +SN+G+ P +G+++R+P P TE+RR K + YAE +KI Sbjct: 68 IKPWDKNNIGPIEKAILKSNIGITPGNDGEIIRLPFPALTEDRRKEYTKEVNTYAEDAKI 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 VRN+RRD MD +KKS KSG +ED LE++IQK+TD IK I+ E+K KE+M+ Sbjct: 128 VVRNVRRDSMDEVKKSEKSGDITEDDRYKLEDEIQKVTDKFIKTIEEMTEKKNKELMNV 186 >gi|332519130|ref|ZP_08395597.1| ribosome recycling factor [Lacinutrix algicola 5H-3-7-4] gi|332044978|gb|EGI81171.1| ribosome recycling factor [Lacinutrix algicola 5H-3-7-4] Length = 185 Score = 217 bits (555), Expect = 4e-55, Method: Composition-based stats. Identities = 79/188 (42%), Positives = 111/188 (59%), Gaps = 5/188 (2%) Query: 1 MNQVID--LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 MN+ I + + K+ M I LKK + +R G+ SP+ML V V+ YGS PL+QVANV Sbjct: 1 MNEDIQFIIDSAKESMDAAIEHLKKQFLNIRAGKASPAMLGSVVVDYYGSKTPLSQVANV 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 + R + + W+K M+ +E+ I +NLG NP+ G+ L I VP TEERRL L K A Sbjct: 61 NTPDGRTITIQPWEKGMIQEIEKAIMIANLGFNPMNNGESLIINVPPLTEERRLQLGKQA 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 A AE +K+ VRN R+D + +KK ASED+ + E DIQ++T+ ++K ID Sbjct: 121 KAEAEDAKVGVRNARKDANNDIKKV---DDASEDLQKNAEADIQELTNKSVKKIDELLAN 177 Query: 179 KKKEIMHF 186 K EIM Sbjct: 178 KDAEIMTV 185 >gi|269792356|ref|YP_003317260.1| ribosome recycling factor [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099991|gb|ACZ18978.1| ribosome recycling factor [Thermanaerovibrio acidaminovorans DSM 6589] Length = 185 Score = 217 bits (555), Expect = 4e-55, Method: Composition-based stats. Identities = 68/179 (37%), Positives = 121/179 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +K + TI LK ++ +RTGR P++++ +KV+ +G+ P+ Q+ VTV EPR L Sbjct: 6 IKEMKQKTEKTIEHLKGTLLGIRTGRAHPALVEEIKVDYFGTMTPIKQMGTVTVPEPRQL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V++ WDK + ++E+ I S+LG+ P +G+ +R+ +PE T+ERR L K+ + YAE+++ Sbjct: 66 VITPWDKSALKAIEKAIQSSSLGVTPKTDGESVRVVLPELTKERRQELSKLVNKYAEEAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +++RN+RRD ++ KK K+G+ SED L+ ++Q D IK +D+ +EK+KEI++ Sbjct: 126 VAIRNVRRDVLEAFKKMEKAGEISEDEHKKLQKEVQDHVDGAIKKVDALAQEKEKEILN 184 >gi|219130047|ref|XP_002185186.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217403365|gb|EEC43318.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 173 Score = 217 bits (555), Expect = 5e-55, Method: Composition-based stats. Identities = 66/173 (38%), Positives = 108/173 (62%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M ++ ++ ++ ++RTGR S +LD VKV+ YG PLNQ+A ++V + L + +DK Sbjct: 1 MAKSVDSVRLNLQSVRTGRASAQILDRVKVDYYGVETPLNQMATISVPSAQQLSIDPYDK 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 + ++E I ES+LGL +G ++RI +P TE+RR ++K+ + E+ K++VRNIR Sbjct: 61 TSLNNIETAIVESDLGLTTNNDGSIIRINIPSMTEDRRKEMLKLCKSIGEEGKVAVRNIR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RDG+D +KK KS ED + ++ +QK+TD +K ID K+KE+M Sbjct: 121 RDGLDTIKKMEKSSDIGEDEMKDGQDTMQKLTDKNVKEIDEVVGAKEKEVMKV 173 >gi|120434469|ref|YP_860171.1| ribosome recycling factor [Gramella forsetii KT0803] gi|166230790|sp|A0LXJ3|RRF_GRAFK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|117576619|emb|CAL65088.1| ribosome recycling factor [Gramella forsetii KT0803] Length = 183 Score = 217 bits (554), Expect = 5e-55, Method: Composition-based stats. Identities = 79/187 (42%), Positives = 113/187 (60%), Gaps = 5/187 (2%) Query: 1 MNQV-IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVT 59 M++V L+ K+ M I+ LKK + +R G+ SPSML V VE YGS PL QVANV Sbjct: 1 MDEVEFILEEAKEGMEKAITHLKKQLSNIRAGKASPSMLGSVMVEYYGSQTPLQQVANVN 60 Query: 60 VLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 + R L + ++K ++ +ERGI +NLG NP+ G+ + I VP TEERR L K A Sbjct: 61 TPDARTLSIQPFEKSLITEIERGIMLANLGFNPMNNGESVIINVPPLTEERRKQLSKQAK 120 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 A AE +K+ VRN R+ M LKK+ SED++ S E+++Q++T++ I+ ID K Sbjct: 121 AEAEDAKVGVRNDRKQAMQELKKA----DISEDLLKSSEDEVQELTNTYIERIDKILTVK 176 Query: 180 KKEIMHF 186 + EIM Sbjct: 177 ETEIMTV 183 >gi|255693713|ref|ZP_05417388.1| ribosome recycling factor [Bacteroides finegoldii DSM 17565] gi|260620530|gb|EEX43401.1| ribosome recycling factor [Bacteroides finegoldii DSM 17565] Length = 186 Score = 217 bits (554), Expect = 5e-55, Method: Composition-based stats. Identities = 75/180 (41%), Positives = 110/180 (61%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L N +++M + +L++ + +R G+ S +LD ++V++YGS VP++ VA VT + R + Sbjct: 8 LDNAQEKMDMAVMYLEEALAHIRAGKASTRLLDGIRVDSYGSMVPISNVAAVTTPDARSI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK M +E+ I +S+LG+ P G+V+RI +P TEERR L K E +K Sbjct: 68 TIKPWDKSMFRVIEKAIIDSDLGIMPENNGEVIRIGIPPLTEERRKQLAKQCKGEGETAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +SVRN RRDG+D LKK+ K G +ED + E +QKI D IK ID EK KEIM Sbjct: 128 VSVRNARRDGIDALKKAVKDG-LAEDEQKNAEAKLQKIHDKYIKQIDDMLAEKDKEIMTV 186 >gi|149178920|ref|ZP_01857498.1| Ribosome recycling factor [Planctomyces maris DSM 8797] gi|148842259|gb|EDL56644.1| Ribosome recycling factor [Planctomyces maris DSM 8797] Length = 186 Score = 217 bits (554), Expect = 5e-55, Method: Composition-based stats. Identities = 61/184 (33%), Positives = 109/184 (59%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+Q L + ++RM + + + +RTGR +P ++D ++V+ YGS PL Q+ANV+V Sbjct: 1 MDQAEILLDAEERMDKAVHVFQGQLQGIRTGRATPGLVDSIRVDYYGSPTPLKQMANVSV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EP+ +++ +D MV + + I S++GL P +G+V+R+ +P + ERR +V Sbjct: 61 PEPQQILIRPFDAGMVGEIAKAITASDMGLAPNTDGRVVRLNIPPLSTERRRQMVSRVKE 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE+++IS+RNIRRD H +S K ED ++ +Q++T ++S + K+ Sbjct: 121 LAEEARISIRNIRRDANKHADQSEKDKVMGEDERDDTKDQVQELTKKFEGKVNSMADAKE 180 Query: 181 KEIM 184 K++M Sbjct: 181 KDVM 184 >gi|168188136|ref|ZP_02622771.1| ribosome recycling factor [Clostridium botulinum C str. Eklund] gi|169294032|gb|EDS76165.1| ribosome recycling factor [Clostridium botulinum C str. Eklund] Length = 185 Score = 217 bits (554), Expect = 5e-55, Method: Composition-based stats. Identities = 81/180 (45%), Positives = 121/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L N +++M +IS LKKD+ +++ G+ +P+MLD V VE YGS P+NQ+ANV+ EPR+L Sbjct: 6 LNNSQEKMLKSISVLKKDLGSMKAGKANPAMLDRVNVEYYGSETPINQLANVSSPEPRVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WDK + +ER I +S+LGLNP +G V+R+ +PE TEE R +VK E+SK Sbjct: 66 LIQPWDKNSLKDIERAILQSDLGLNPSNDGSVIRLIIPELTEETRKDIVKKVKKVGEESK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++R+IRR+G D +K +K+ +ED EN +QKITD I ID+ + K+KE+M Sbjct: 126 IAIRSIRREGNDKIKNLKKNNDITEDEAKEGENSVQKITDKYITEIDNIIDAKEKEVMSV 185 >gi|255994878|ref|ZP_05428013.1| ribosome recycling factor [Eubacterium saphenum ATCC 49989] gi|255993591|gb|EEU03680.1| ribosome recycling factor [Eubacterium saphenum ATCC 49989] Length = 190 Score = 217 bits (554), Expect = 5e-55, Method: Composition-based stats. Identities = 76/186 (40%), Positives = 121/186 (65%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M ++ID N K++ TIS L ++ ++R GR +PS+LD ++V+ YG+ PL +AN++V Sbjct: 7 MKEIID--NFKEKGEKTISLLTGELNSVRAGRANPSLLDQIRVDYYGTPTPLKNIANISV 64 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 +P+ L++S +D + + + I+ES LG+NP+ +G+ +R+ VP+ TEERR + K+ Sbjct: 65 PDPKSLMISPFDPSAIKEIIKAINESELGINPLDDGKNIRLKVPQLTEERRKEITKMVKQ 124 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 + +KI++RN+RRD DHLKK+ K+G SED + DIQ TD K ID +EK+ Sbjct: 125 ITDDAKIAIRNLRRDANDHLKKAEKNGDISEDELKGDTKDIQTKTDEFTKKIDGMLKEKE 184 Query: 181 KEIMHF 186 KEIM Sbjct: 185 KEIMSV 190 >gi|221194591|ref|ZP_03567648.1| ribosome recycling factor [Atopobium rimae ATCC 49626] gi|221185495|gb|EEE17885.1| ribosome recycling factor [Atopobium rimae ATCC 49626] Length = 181 Score = 217 bits (554), Expect = 5e-55, Method: Composition-based stats. Identities = 65/179 (36%), Positives = 99/179 (55%), Gaps = 3/179 (1%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 K M I LK + +RTGR +P LD +KV+ YG P+ Q+A V V E +LV Sbjct: 6 DKAKASMDKGIEALKNNFARVRTGRANPHALDPIKVDYYGQPTPIMQLAAVKVPEASLLV 65 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + WDK + ++E+ I S+LG+ P +G +R+P P TEERR L K AE+++I Sbjct: 66 IEPWDKTSLKAIEKAIEASDLGITPSNDGATIRLPFPMPTEERRRELAKECAGLAEEARI 125 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RRD + + + SED A + IQK+TD ++ I+ + K E+M Sbjct: 126 AIRNVRRDINGKI---ERDEELSEDDQAREKKHIQKLTDDSVAEIERLLKVKTAEVMEI 181 >gi|163753790|ref|ZP_02160913.1| ribosome recycling factor (ribosome releasing factor) [Kordia algicida OT-1] gi|161326004|gb|EDP97330.1| ribosome recycling factor (ribosome releasing factor) [Kordia algicida OT-1] Length = 184 Score = 217 bits (554), Expect = 5e-55, Method: Composition-based stats. Identities = 75/188 (39%), Positives = 111/188 (59%), Gaps = 6/188 (3%) Query: 1 MNQVID--LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 MN+ I + K+ M I+ L K ++ +R G+ SP+ML V V+ YGS PL+QVANV Sbjct: 1 MNEDIKFIIDTTKEGMDSAITHLTKQLLGIRAGKASPAMLSSVMVDYYGSQTPLSQVANV 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 + R + + W+K M+ +E+GI +NLG NP+ G+ + I VP TEERR LVK + Sbjct: 61 NSTDARTITIQPWEKSMIQEIEKGILVANLGFNPMNNGESVIINVPPLTEERRRELVKQS 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 A AE +K+ +RN R++ +KK S+D+ + E D+Q +TD +K ID F Sbjct: 121 KAEAEDAKVGIRNARQEANKEIKKL----DVSDDLKKNAEIDVQALTDDYVKKIDEIFSV 176 Query: 179 KKKEIMHF 186 K+KEIM Sbjct: 177 KEKEIMTV 184 >gi|237751369|ref|ZP_04581849.1| ribosome releasing factor [Helicobacter bilis ATCC 43879] gi|229372735|gb|EEO23126.1| ribosome releasing factor [Helicobacter bilis ATCC 43879] Length = 185 Score = 217 bits (554), Expect = 6e-55, Method: Composition-based stats. Identities = 66/179 (36%), Positives = 112/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 N K+ M ++ L+KD TLR+GRVS ++LD ++V+ YG+ PL QV +V + ++ Sbjct: 7 NNTKEYMQKSLQSLQKDFATLRSGRVSVNILDNIRVDYYGTPTPLAQVGSVIAQDATTII 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++ W+K ++ +E+ I E+N+G+NP +G+ +++ P T ++R + K A A EK+KI Sbjct: 67 INPWEKPLLKEIEKAIQEANIGVNPNADGECIKLFFPPMTSDQRKDIAKQAKAMGEKAKI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIR+D + +KK K + D ++IQKITD IK ID+ + K++E+M Sbjct: 127 AVRNIRQDSNNAIKKLEKDKAITTDESKKGADEIQKITDEHIKKIDNMVKTKEEEVMKV 185 >gi|227497536|ref|ZP_03927764.1| ribosome recycling factor [Actinomyces urogenitalis DSM 15434] gi|226832990|gb|EEH65373.1| ribosome recycling factor [Actinomyces urogenitalis DSM 15434] Length = 185 Score = 217 bits (554), Expect = 6e-55, Method: Composition-based stats. Identities = 63/180 (35%), Positives = 109/180 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + +++M + K+++ +RTGR +PSM + + V+ YG+ PL Q+A++T+ E R + Sbjct: 6 MLEAEEKMEAALDAAKRELAAIRTGRANPSMFNSIVVDYYGAPTPLQQLASITIPEARTV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +VS +D+ + + I ES+LG+NP +G V+R+ +P TEERR VK+A + AE+S+ Sbjct: 66 IVSPFDRGAMKEITSAIRESDLGVNPTDDGTVIRVTLPALTEERRKDYVKLARSRAEESR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I VR IR L+ +K G+A ED V E D+ +T +++ID+ K+ E++ Sbjct: 126 IQVRGIRGKSKKELEAIKKDGEAGEDDVKRAEGDLDALTKRFVESIDAALTAKEAELLEV 185 >gi|312143676|ref|YP_003995122.1| ribosome recycling factor [Halanaerobium sp. 'sapolanicus'] gi|311904327|gb|ADQ14768.1| ribosome recycling factor [Halanaerobium sp. 'sapolanicus'] Length = 185 Score = 217 bits (554), Expect = 6e-55, Method: Composition-based stats. Identities = 72/180 (40%), Positives = 111/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ ++RM + K+D+ T+RTGR PS+++ +K YG P+ Q+A V E R + Sbjct: 6 LKETEERMKKALEATKEDLNTIRTGRARPSLVENIKANNYGVATPIQQMAKVMAPEARQI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK + ++E+ I + NLGLNP +G V+RI +P+ TEERR L K+ H AE K Sbjct: 66 VIEPWDKNNIEAIEKAIMQENLGLNPSNDGNVIRINIPQLTEERRKELTKILHKKAEDGK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIRRD + L+ G+ SED + +++Q +TD+ I I+S E+K+ EIM Sbjct: 126 IAIRNIRRDANEELEMLEDEGEISEDNMHRGFDNVQDLTDTYIGKIESITEKKENEIMEV 185 >gi|224372138|ref|YP_002606510.1| ribosome recycling factor [Nautilia profundicola AmH] gi|223590013|gb|ACM93749.1| ribosome recycling factor [Nautilia profundicola AmH] Length = 184 Score = 217 bits (554), Expect = 6e-55, Method: Composition-based stats. Identities = 79/186 (42%), Positives = 114/186 (61%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M +V + K+ M +I LKKD+ TLRTG+VS +LD VKVE YG+ PLNQVANV Sbjct: 1 MEEVFEF--AKEHMEKSIEVLKKDLNTLRTGKVSIHVLDGVKVEYYGAPTPLNQVANVNA 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 ++ +VVS WDK ++ +ER I E+N+G NP +G V+++ P TEE R K A Sbjct: 59 VDATTIVVSPWDKSIINDIERAIQEANVGANPNNDGDVIKLYFPPMTEEERKKQAKKAKE 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 +AEK+KI++RNIRRD D +KK K + +ED +Q+ITD+ + +D +K Sbjct: 119 FAEKAKIAIRNIRRDANDDIKKMFKDKEITEDDQKRGLEKVQEITDAYVAKVDEIVNKKI 178 Query: 181 KEIMHF 186 ++M Sbjct: 179 DDVMKV 184 >gi|294783615|ref|ZP_06748939.1| ribosome recycling factor [Fusobacterium sp. 1_1_41FAA] gi|294480493|gb|EFG28270.1| ribosome recycling factor [Fusobacterium sp. 1_1_41FAA] Length = 190 Score = 217 bits (553), Expect = 6e-55, Method: Composition-based stats. Identities = 77/179 (43%), Positives = 114/179 (63%), Gaps = 2/179 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +++M TI +K+ ++R GR + +MLD VKVE YGS VPLNQV V+ E R+L Sbjct: 9 VKECEEKMLKTIEAVKERFTSIRAGRANVAMLDAVKVENYGSEVPLNQVGTVSAPEARLL 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK ++ +E+ + +NLG+ P +G+V+R+ +PE T +RR VK+A AE K Sbjct: 69 VIDPWDKTLIPKIEKALLAANLGMTPNNDGRVIRLVLPELTADRRKEYVKLAKNEAENGK 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGK--ASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 I+VRNIR+D +HLKK K + SED + E +Q +TD IK ID +K+KEI Sbjct: 129 IAVRNIRKDINNHLKKLEKDKENPISEDELKKEETHVQTLTDKYIKEIDELLAKKEKEI 187 >gi|149374434|ref|ZP_01892208.1| ribosome recycling factor [Marinobacter algicola DG893] gi|149361137|gb|EDM49587.1| ribosome recycling factor [Marinobacter algicola DG893] Length = 194 Score = 217 bits (553), Expect = 6e-55, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 105/179 (58%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + + +M ++ L +RTGR PS+LD V V+ YG PL QVA+V V + R L Sbjct: 16 ADAEKKMKKSLESLSWAFNKIRTGRAHPSILDSVTVDYYGQETPLKQVASVNVEDNRTLA 75 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 VS W+K ++ +E+ I S+LGLNP G+V+RIP+P TEE R +VK A A AE K+ Sbjct: 76 VSPWEKPLLPKIEKAIMMSDLGLNPSNNGEVIRIPMPMLTEETRKEMVKQARADAEHGKV 135 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRN RRD LK+ K +ED E +IQK+TD I I+ + K++++M Sbjct: 136 SVRNARRDANSTLKELLKEKDINEDEERYGEEEIQKLTDRYIAEIEKQLKAKEEDLMAV 194 >gi|317056783|ref|YP_004105250.1| ribosome recycling factor [Ruminococcus albus 7] gi|315449052|gb|ADU22616.1| ribosome recycling factor [Ruminococcus albus 7] Length = 184 Score = 217 bits (553), Expect = 6e-55, Method: Composition-based stats. Identities = 73/179 (40%), Positives = 115/179 (64%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 K++M +++ + D +R GR +P++LD VKV+ YGS P+NQ+A V+V E R+LV Sbjct: 6 NKAKEKMEKSVNVMLSDFAAIRAGRANPAVLDKVKVDYYGSPTPVNQMAAVSVAEARILV 65 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++ WDK + S+E+ I S++G+NP +GQ +R+ P+ TE+RR +VK E +K+ Sbjct: 66 ITPWDKSTLKSIEKAIQASDIGINPQNDGQTIRLIFPQLTEDRRKEIVKDVKKGGEDTKV 125 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VR+IRRD ++ +K +K+ + +ED E IQKITD IK ID EK+KEI+ Sbjct: 126 AVRSIRRDAIEKIKAKKKNNEITEDEQKDGEEAIQKITDKFIKEIDGHVAEKEKEILSI 184 >gi|225011201|ref|ZP_03701661.1| ribosome recycling factor [Flavobacteria bacterium MS024-3C] gi|225004662|gb|EEG42624.1| ribosome recycling factor [Flavobacteria bacterium MS024-3C] Length = 184 Score = 217 bits (553), Expect = 6e-55, Method: Composition-based stats. Identities = 74/188 (39%), Positives = 104/188 (55%), Gaps = 6/188 (3%) Query: 1 MNQVID--LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 MN+ +D L + K+ M ++ L+K +R G+ SP ML VKV+ YGS PL+QVANV Sbjct: 1 MNEEVDFILDSAKENMDRAMAHLEKSFAKIRAGKASPIMLSTVKVDYYGSPTPLSQVANV 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 + R + V W+K M+ +E+ I +NLG NP+ G ++ I VP TEERR LVK A Sbjct: 61 NTTDARTISVQPWEKNMLQEIEKAITNANLGFNPMNNGDLIIINVPPLTEERRRDLVKQA 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 A AE +KI VRN R++ +K ED E IQ++T+ K I+ Sbjct: 121 KAEAEDAKIGVRNARQEANKDIK----GTDLPEDTAKDAEASIQELTNQYSKKIEELLTV 176 Query: 179 KKKEIMHF 186 K+ EIM Sbjct: 177 KEAEIMKV 184 >gi|153003180|ref|YP_001377505.1| ribosome recycling factor [Anaeromyxobacter sp. Fw109-5] gi|190360233|sp|A7H725|RRF_ANADF RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|152026753|gb|ABS24521.1| ribosome recycling factor [Anaeromyxobacter sp. Fw109-5] Length = 187 Score = 217 bits (553), Expect = 6e-55, Method: Composition-based stats. Identities = 63/180 (35%), Positives = 111/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++ + +T+ L++++ ++RTGR S +LD V+V+ YG+ PLNQVA ++V E R++ Sbjct: 8 LNDLHGGIANTLDDLRRELASVRTGRASLHLLDGVRVDYYGTSTPLNQVATLSVPEARLI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V W+K ++ +E+ I ++NLG+NP + ++R+P+P TEERR +VK E K Sbjct: 68 MVKPWEKNLIPVIEKAIRDANLGVNPQSDKDLVRVPIPPLTEERRKEIVKQVKHKGEDHK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RN RRD + ++ + K G + D + +QK TD +K +D K+KE+M Sbjct: 128 VAIRNQRRDAKELIEVAEKDGDIAADDAKKALDKMQKETDEGVKKVDEIVAAKEKEVMQV 187 >gi|257467196|ref|ZP_05631507.1| ribosome recycling factor (RRF) [Fusobacterium gonidiaformans ATCC 25563] gi|315918326|ref|ZP_07914566.1| ribosome recycling factor [Fusobacterium gonidiaformans ATCC 25563] gi|313692201|gb|EFS29036.1| ribosome recycling factor [Fusobacterium gonidiaformans ATCC 25563] Length = 189 Score = 217 bits (553), Expect = 6e-55, Method: Composition-based stats. Identities = 80/179 (44%), Positives = 116/179 (64%), Gaps = 2/179 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q +++M TI K+ ++R GR S +MLD +KVE YGS +PLNQVA V+ E R+L Sbjct: 8 IQECQNKMQKTIEATKEKFTSIRAGRASVAMLDNIKVEQYGSDMPLNQVATVSAPEARLL 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK M+ +E+ I +NLG+NP +G+V+R+ +PE T +RR VK+A AE K Sbjct: 68 VIDPWDKTMILKIEKAILAANLGMNPNNDGRVVRLVMPELTADRRKEYVKLAKKEAENGK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGK--ASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 I+VRNIR+D LKK K + SED + E ++Q +TD TIK++D +K+KEI Sbjct: 128 IAVRNIRKDMNTALKKIEKDKESGMSEDELKRFEAEVQTLTDKTIKDLDDLLAKKEKEI 186 >gi|332883553|gb|EGK03836.1| ribosome-recycling factor [Dysgonomonas mossii DSM 22836] Length = 187 Score = 217 bits (553), Expect = 6e-55, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 113/179 (63%), Gaps = 1/179 (0%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q + +M ++ FL + + +R G+ +P +LD +K+E YGS PL+ VA + + R ++ Sbjct: 10 QKAEAKMLASVEFLDETLSRIRAGKANPHILDGIKLEYYGSITPLSGVAAINTPDARTII 69 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W+K+M+ VE+ I S++G+ P G+V+R+ +P TEERR LVK A AE +K+ Sbjct: 70 VQPWEKQMLKEVEKAILNSDVGITPDNNGEVIRLSIPPLTEERRKLLVKQAKQEAEDAKV 129 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRN RRD +D +KKS K G +ED+ EN++QK+ D IK ID F K+KEI+ Sbjct: 130 SVRNARRDAIDTIKKSVKEG-LAEDVAKDGENEMQKLHDKYIKKIDDLFALKEKEILTV 187 >gi|325110872|ref|YP_004271940.1| ribosome recycling factor [Planctomyces brasiliensis DSM 5305] gi|324971140|gb|ADY61918.1| ribosome recycling factor [Planctomyces brasiliensis DSM 5305] Length = 186 Score = 217 bits (553), Expect = 7e-55, Method: Composition-based stats. Identities = 60/178 (33%), Positives = 107/178 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + ++RM +S L + LRTGR +P ++D ++V+ YGS PL Q+AN++V EP+ + Sbjct: 7 LLDCEERMDKAVSVLSDQLKGLRTGRANPGLVDSIRVDYYGSPTPLKQLANISVPEPQQI 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +D + + + I S++GL P +G+++R+ +P + ERR LV +AE+++ Sbjct: 67 VIRPFDASAINEIVKAIQASDVGLAPNNDGKLVRLNIPPLSTERRKQLVSRVKEFAEEAR 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +S+RNIRRD H +S K SED +++ +Q++T ++ K+K+IM Sbjct: 127 VSIRNIRRDANKHADQSEKDKLFSEDERDDVKDKVQELTKKHEGLVNDAAAAKEKDIM 184 >gi|283955658|ref|ZP_06373151.1| ribosome recycling factor [Campylobacter jejuni subsp. jejuni 1336] gi|283792883|gb|EFC31659.1| ribosome recycling factor [Campylobacter jejuni subsp. jejuni 1336] Length = 185 Score = 217 bits (553), Expect = 7e-55, Method: Composition-based stats. Identities = 63/186 (33%), Positives = 110/186 (59%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 ++++ + Q + ++ LKKD TLRTG+V+ +LD + V+ YG+ PLNQVA V Sbjct: 2 LSEIFNKQKTQS--EKSLEALKKDFTTLRTGKVNTHILDHITVDYYGTQAPLNQVATVLA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + + ++ W+K ++ ++E I +N+G+NP +G+ +++ P T E+R VK A A Sbjct: 60 SDASTISITPWEKPLLKTIESAIAAANIGVNPNNDGESVKLFFPPMTREQREENVKQAKA 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 EK+K+S+RNIR+D D +KK K SED +++QK+T++ ID + K+ Sbjct: 120 MGEKAKVSIRNIRKDANDAVKKLEKDKAISEDEAKKAYDEVQKLTNAYTIKIDESVKSKE 179 Query: 181 KEIMHF 186 E++ Sbjct: 180 SELLKV 185 >gi|160880757|ref|YP_001559725.1| ribosome recycling factor [Clostridium phytofermentans ISDg] gi|190360239|sp|A9KMX5|RRF_CLOPH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|160429423|gb|ABX42986.1| ribosome recycling factor [Clostridium phytofermentans ISDg] Length = 184 Score = 217 bits (553), Expect = 7e-55, Method: Composition-based stats. Identities = 73/186 (39%), Positives = 118/186 (63%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 MN+ I + + +M ++ LK++ + +R GR +P +LD ++V+ YG+ + VANV+V Sbjct: 1 MNEKI--KPFEGKMQKSLDSLKEEYVGIRAGRANPHLLDKLRVDYYGTPSAIQAVANVSV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R++ + W+ +++ +E+ I S+LGL P +G+V+R+ PE TEERR LVK Sbjct: 59 PEARVIQIQPWEAKLIKEIEKAIIASDLGLTPSNDGKVIRLVFPELTEERRKDLVKDVKK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE +K++VRN+RRD D +KK K+ + SED +E++IQKITD I +D E+K Sbjct: 119 KAENTKVAVRNVRRDANDAIKKLAKANEISEDEQKQIEDEIQKITDKFITEVDKVMEDKS 178 Query: 181 KEIMHF 186 KEI+ Sbjct: 179 KEILTV 184 >gi|257459905|ref|ZP_05625011.1| ribosome recycling factor [Campylobacter gracilis RM3268] gi|257442757|gb|EEV17894.1| ribosome recycling factor [Campylobacter gracilis RM3268] Length = 185 Score = 217 bits (553), Expect = 7e-55, Method: Composition-based stats. Identities = 67/172 (38%), Positives = 101/172 (58%) Query: 15 GDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKE 74 I LKKD TLRTG+VS ++LD + V+ YGS PLNQVA V + + ++ W+K Sbjct: 14 DRAIEALKKDFTTLRTGKVSVAILDHILVDYYGSQTPLNQVATVLSTDAVTISITPWEKP 73 Query: 75 MVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRR 134 M+ ++E I +N+G+NP +G+ +++ P T E+R K A A EK+KI +RN+R+ Sbjct: 74 MLKAIESAIAAANIGVNPTNDGESVKLFFPPMTVEQRQENAKKAKAMGEKAKIGIRNVRK 133 Query: 135 DGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 D D +KK K SED +++QKITDS ID + K+ E++ Sbjct: 134 DANDEIKKLEKDKAISEDDAKKGYDEVQKITDSYSAKIDDAVKAKEAELLKV 185 >gi|256846527|ref|ZP_05551984.1| ribosome recycling factor [Fusobacterium sp. 3_1_36A2] gi|294784116|ref|ZP_06749417.1| ribosome recycling factor [Fusobacterium sp. 3_1_27] gi|256718296|gb|EEU31852.1| ribosome recycling factor [Fusobacterium sp. 3_1_36A2] gi|294488186|gb|EFG35531.1| ribosome recycling factor [Fusobacterium sp. 3_1_27] Length = 190 Score = 217 bits (553), Expect = 7e-55, Method: Composition-based stats. Identities = 78/179 (43%), Positives = 114/179 (63%), Gaps = 2/179 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +++M TI +K+ +R GR + SMLD VKVE YGS VPLNQ+ V+ E R+L Sbjct: 9 IKECEEKMLKTIEAVKEKFTAIRAGRANVSMLDGVKVENYGSEVPLNQIGTVSAPEARLL 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK +++ VE+ + +NLG+ P +G+V+R+ +PE T ERR VK+A AE K Sbjct: 69 VIDPWDKSLISKVEKALLAANLGMTPNNDGRVIRLVLPELTAERRKEYVKLAKNEAENGK 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGK--ASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 I+VRNIR+D +HLKK K + SED + E +Q +TD +K ID +K+KEI Sbjct: 129 IAVRNIRKDINNHLKKLEKDKENPISEDELKKEETRVQTLTDKYVKEIDDLLAKKEKEI 187 >gi|239917205|ref|YP_002956763.1| ribosome recycling factor [Micrococcus luteus NCTC 2665] gi|281414322|ref|ZP_06246064.1| ribosome recycling factor [Micrococcus luteus NCTC 2665] gi|259494549|sp|C5C9Q7|RRF_MICLC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|239838412|gb|ACS30209.1| ribosome recycling factor [Micrococcus luteus NCTC 2665] Length = 185 Score = 217 bits (553), Expect = 7e-55, Method: Composition-based stats. Identities = 64/180 (35%), Positives = 111/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 LQ+ +++M TI ++D +++RTGR +P + V V+ YGS PL Q+A+ T + R L Sbjct: 6 LQSAEEQMDRTIEATREDFVSVRTGRANPGLYSKVMVDYYGSFTPLQQLASFTTTDARTL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +D+ + ++E+ + ES +G NP +G+V+RI +PE T ERR VK+ + AE+ K Sbjct: 66 LITPFDQSALRNIEKALSESEVGANPSNDGKVIRIVMPELTAERRKEYVKLVKSKAEEHK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ISVRN RR + + K+ K G+ ED A E ++ +T ++ ID + K++E++ Sbjct: 126 ISVRNARRKAKEAMDKAVKDGEVGEDEGARGEKELDALTKRHVELIDEMAKNKEQELLEV 185 >gi|34762371|ref|ZP_00143373.1| Ribosome Recycling Factor (RRF) [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887953|gb|EAA25019.1| Ribosome Recycling Factor (RRF) [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 190 Score = 217 bits (553), Expect = 8e-55, Method: Composition-based stats. Identities = 78/179 (43%), Positives = 114/179 (63%), Gaps = 2/179 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +++M TI +K+ +R GR + SMLD VKVE YGS VPLNQ+ V+ E R+L Sbjct: 9 IKECEEKMVKTIEAVKEKFTAIRAGRANVSMLDGVKVENYGSEVPLNQIGTVSAPEARLL 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK +++ VE+ + +NLG+ P +G+V+R+ +PE T ERR VK+A AE K Sbjct: 69 VIDPWDKSLISKVEKALLAANLGMTPNNDGRVIRLVLPELTAERRKEYVKLAKNEAENGK 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGK--ASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 I+VRNIR+D +HLKK K + SED + E +Q +TD +K ID +K+KEI Sbjct: 129 IAVRNIRKDINNHLKKLEKDKENPISEDELKKEETRVQTLTDKYVKEIDDLLAKKEKEI 187 >gi|255036758|ref|YP_003087379.1| ribosome recycling factor [Dyadobacter fermentans DSM 18053] gi|254949514|gb|ACT94214.1| ribosome recycling factor [Dyadobacter fermentans DSM 18053] Length = 186 Score = 217 bits (553), Expect = 8e-55, Method: Composition-based stats. Identities = 74/187 (39%), Positives = 113/187 (60%), Gaps = 2/187 (1%) Query: 1 MNQV-IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVT 59 M ++ + L + KD M I L ++ +R G+ SP ML+ +++E YGS P+ VA + Sbjct: 1 MEEIELYLDDAKDTMDGAIKHLIIELGKIRAGKASPQMLEGLQIEYYGSMTPIQNVATIN 60 Query: 60 VLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 + R L + ++K+++ +E+ I SNLG +P +G+++RI VP EERR LVK A Sbjct: 61 TPDARTLAIKPFEKKIINDIEKAIRNSNLGFSPSNDGEMIRISVPPLNEERRRELVKRAK 120 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 E +KI+VRNIR+D + L+K K G SED+V S E +QK+TDS + I+ F K Sbjct: 121 NEIETAKINVRNIRQDANNSLRKLTKEG-VSEDLVKSSEERVQKLTDSFVAKIEQIFSVK 179 Query: 180 KKEIMHF 186 +KEIM Sbjct: 180 EKEIMEV 186 >gi|298346466|ref|YP_003719153.1| ribosome recycling factor [Mobiluncus curtisii ATCC 43063] gi|304389795|ref|ZP_07371754.1| ribosome recycling factor [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315657102|ref|ZP_07909986.1| ribosome recycling factor [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298236527|gb|ADI67659.1| ribosome recycling factor [Mobiluncus curtisii ATCC 43063] gi|304326971|gb|EFL94210.1| ribosome recycling factor [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315492205|gb|EFU81812.1| ribosome recycling factor [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 185 Score = 217 bits (553), Expect = 8e-55, Method: Composition-based stats. Identities = 60/180 (33%), Positives = 99/180 (55%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ K M +S + + ++RTGR + +M D + V+ YG+ PL Q+A+ + E R + Sbjct: 6 LKSAKTMMTKALSATQDEFASIRTGRANTAMFDGIMVDYYGAPTPLKQLASFNIPEARTV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V +DK + R I E++LG+NP +G+ +RI +P TEERR VK+A AE+ + Sbjct: 66 IVQPFDKSASQDIIRAIAEADLGVNPTDDGKTIRIVLPALTEERRKEYVKIAKTKAEEGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVR++RR D + K+ + ED + E ++ IT ID K+ E+M Sbjct: 126 QSVRSLRRKAKDEFEAMLKNKELGEDEIKRGEKELDSITKKFTDEIDQLLAAKESELMTI 185 >gi|325286740|ref|YP_004262530.1| Ribosome-recycling factor [Cellulophaga lytica DSM 7489] gi|324322194|gb|ADY29659.1| Ribosome-recycling factor [Cellulophaga lytica DSM 7489] Length = 185 Score = 216 bits (552), Expect = 8e-55, Method: Composition-based stats. Identities = 74/188 (39%), Positives = 106/188 (56%), Gaps = 5/188 (2%) Query: 1 MNQVID--LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 MN+ I+ L + K+ M TI L+K + +R G+ SP ML V V+ YGS PL+QVANV Sbjct: 1 MNEEINFILDSTKESMNGTIDHLEKAFIKIRAGKASPVMLSSVMVDYYGSATPLSQVANV 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 + R + V W+K M+ +E+ I SNLG NP+ G + I VP TEERR L K A Sbjct: 61 NTPDARTISVQPWEKNMLQEIEKAIMNSNLGFNPMNNGDFVIINVPPLTEERRRDLAKQA 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 A+ +KI +RN R++ ++ ASED+ + E D+Q +T+ K ID+ Sbjct: 121 KGEADDAKIGIRNARQEANKEIRAL---DDASEDLKKNAEADVQDLTNLYTKKIDALLVT 177 Query: 179 KKKEIMHF 186 K+ EIM Sbjct: 178 KEAEIMKV 185 >gi|322379208|ref|ZP_08053599.1| ribosome recycling factor [Helicobacter suis HS1] gi|322379720|ref|ZP_08054033.1| ribosome recycling factor [Helicobacter suis HS5] gi|321147869|gb|EFX42456.1| ribosome recycling factor [Helicobacter suis HS5] gi|321148348|gb|EFX42857.1| ribosome recycling factor [Helicobacter suis HS1] Length = 187 Score = 216 bits (552), Expect = 8e-55, Method: Composition-based stats. Identities = 63/179 (35%), Positives = 110/179 (61%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ +++M ++ L KD TLR+G+VS ++L+ V+V+ Y S PLNQVA++ + L Sbjct: 9 QHSQEQMQKSLQSLLKDFTTLRSGKVSINLLEHVRVDYYNSPTPLNQVASILSTDASTLT 68 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++ W+K ++ +ER + E+NLG+NP +G+ +++ P T E+R + K A A EK+K+ Sbjct: 69 ITPWEKGLLKEIERALQEANLGVNPNNDGETIKLFFPPMTSEQRKEIAKEAKAMGEKAKV 128 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIR+D + +KK K S D ++QK TD+ I I+ + K++E++ Sbjct: 129 AVRNIRQDANNQIKKLEKEKSISADENKKALAEVQKHTDAFINKIEQAVKAKEEEVLKL 187 >gi|237753264|ref|ZP_04583744.1| ribosome recycling factor [Helicobacter winghamensis ATCC BAA-430] gi|229375531|gb|EEO25622.1| ribosome recycling factor [Helicobacter winghamensis ATCC BAA-430] Length = 184 Score = 216 bits (552), Expect = 9e-55, Method: Composition-based stats. Identities = 63/178 (35%), Positives = 112/178 (62%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 + K+ M +I +KK+ TLR+G+VS S+LD ++++ Y + PLNQV +V + +V+ Sbjct: 7 HTKEAMDKSIEAMKKEFGTLRSGKVSVSILDHIRIDYYDTPTPLNQVGSVIAQDASTIVI 66 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 + W+K ++ +ER I E+N+G+NP +G+ +++ P T E+R + K A EK+K++ Sbjct: 67 TPWEKNLLKDIERAIQEANIGVNPNNDGETIKLFFPPMTSEQRKEIAKEAKNIGEKAKVA 126 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +RNIR+D D +KK K + SED +++IQK TD+ K ID + K+++++ Sbjct: 127 IRNIRKDSNDKIKKLEKDKEISEDESKKGQDEIQKFTDNATKKIDELVKHKEEDLLKI 184 >gi|315655036|ref|ZP_07907940.1| ribosome recycling factor [Mobiluncus curtisii ATCC 51333] gi|315490692|gb|EFU80313.1| ribosome recycling factor [Mobiluncus curtisii ATCC 51333] Length = 185 Score = 216 bits (552), Expect = 9e-55, Method: Composition-based stats. Identities = 60/180 (33%), Positives = 99/180 (55%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ K M +S + + ++RTGR + +M D + V+ YG+ PL Q+A+ + E R + Sbjct: 6 LKSAKTMMAKALSATQDEFASIRTGRANTAMFDGIMVDYYGAPTPLKQLASFNIPEARTV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V +DK + R I E++LG+NP +G+ +RI +P TEERR VK+A AE+ + Sbjct: 66 IVQPFDKSASQDIIRAIAEADLGVNPTDDGKTIRIVLPALTEERRKEYVKIAKTKAEEGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVR++RR D + K+ + ED + E ++ IT ID K+ E+M Sbjct: 126 QSVRSLRRKAKDEFEAMLKNKELGEDEIKRGEKELDSITKKFTDEIDQLLAAKESELMTI 185 >gi|153808675|ref|ZP_01961343.1| hypothetical protein BACCAC_02974 [Bacteroides caccae ATCC 43185] gi|149128501|gb|EDM19719.1| hypothetical protein BACCAC_02974 [Bacteroides caccae ATCC 43185] Length = 186 Score = 216 bits (552), Expect = 9e-55, Method: Composition-based stats. Identities = 75/180 (41%), Positives = 110/180 (61%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L N +++M I +L++ + +R G+ S +LD ++V++YGS VP++ VA VT + R + Sbjct: 8 LDNAQEKMDMAIMYLEEALAHIRAGKASTRLLDGIRVDSYGSMVPISNVAAVTTPDARSI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK M +E+ I +S+LG+ P G+++RI +P TEERR L K E +K Sbjct: 68 TIKPWDKSMFRVIEKAIIDSDLGIMPENNGEIIRIGIPPLTEERRKQLAKQCKGEGETAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +SVRN RRDG+D LKK+ K G +ED + E +QKI D IK ID EK KEIM Sbjct: 128 VSVRNARRDGIDALKKAVKDG-LAEDEQKNAEAKLQKIHDKYIKQIDDMLAEKDKEIMTV 186 >gi|256820725|ref|YP_003142004.1| ribosome recycling factor [Capnocytophaga ochracea DSM 7271] gi|256582308|gb|ACU93443.1| ribosome recycling factor [Capnocytophaga ochracea DSM 7271] Length = 184 Score = 216 bits (552), Expect = 9e-55, Method: Composition-based stats. Identities = 71/188 (37%), Positives = 110/188 (58%), Gaps = 6/188 (3%) Query: 1 MNQVID--LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 MN+ I+ L+ + M + + L K + +R G+ SP M+ V V+ YG+ PL+QVANV Sbjct: 1 MNEEINIILETTSEAMQEALQHLDKALANIRAGKASPQMVSSVMVDYYGAQTPLSQVANV 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 + + R + + W+K+M+ +E+ I +NLG NP+ G+++ I VP TEERR LVK A Sbjct: 61 SAPDSRTISIQPWEKKMIQPIEKAIQIANLGFNPMNNGEMVIITVPPLTEERRRELVKQA 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 E +KISVRN R+D +KK +AS+D+ E +QK+TD IK ++ Sbjct: 121 KGEGEDAKISVRNARQDANKEIKKV----EASDDVKKEAEERVQKLTDKYIKKVEEVLAV 176 Query: 179 KKKEIMHF 186 K+ EI+ Sbjct: 177 KEAEILKV 184 >gi|237739392|ref|ZP_04569873.1| ribosome recycling factor [Fusobacterium sp. 2_1_31] gi|229423000|gb|EEO38047.1| ribosome recycling factor [Fusobacterium sp. 2_1_31] Length = 190 Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 79/179 (44%), Positives = 116/179 (64%), Gaps = 2/179 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +D+M TI +K+ ++R GR + +MLD VKVE YGS VPLNQV +V+ E R+L Sbjct: 9 VKECEDKMLKTIESVKERFTSIRAGRANVAMLDAVKVENYGSEVPLNQVGSVSAPEARLL 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV WDK ++ +E+ + +NLG+ P +G+V+R+ +PE T +RR VK+A AE K Sbjct: 69 VVDPWDKTLIPKIEKALLAANLGMTPNNDGRVIRLVLPELTADRRKEYVKLAKNEAENGK 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGK--ASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 I+VRNIR+D +HLKK K + SED + E ++Q +TD IK ID +K+KEI Sbjct: 129 IAVRNIRKDINNHLKKLEKDKENPISEDELKKEEANVQTLTDKYIKEIDELLAKKEKEI 187 >gi|332877581|ref|ZP_08445325.1| ribosome recycling factor [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684430|gb|EGJ57283.1| ribosome recycling factor [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 184 Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 70/188 (37%), Positives = 108/188 (57%), Gaps = 6/188 (3%) Query: 1 MNQVID--LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 MN+ I+ L + + M + + L K + +R G+ SP ML V V+ YG+ PL+QVANV Sbjct: 1 MNEEINIILDSTSEAMQEALQHLDKALGNIRAGKASPQMLGSVMVDYYGAQTPLSQVANV 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 + R + + W+K+M+ +E+ I +NLG NP+ G+++ I VP TEERR LVK A Sbjct: 61 AAPDSRTITIQPWEKKMIQPIEKAIQIANLGFNPMNNGEMVIISVPPLTEERRKELVKQA 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 E +KISVRN R++ +KK + S+D+ E +QK+TD IK ++ Sbjct: 121 KGEGEDAKISVRNARQEANKEIKKV----ETSDDIKKDAEERVQKLTDKYIKKVEEVLAA 176 Query: 179 KKKEIMHF 186 K+ EI+ Sbjct: 177 KEAEILKV 184 >gi|29347659|ref|NP_811162.1| ribosome recycling factor [Bacteroides thetaiotaomicron VPI-5482] gi|253572118|ref|ZP_04849522.1| ribosome-recycling factor [Bacteroides sp. 1_1_6] gi|34924952|sp|Q8A5J0|RRF_BACTN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|29339560|gb|AAO77356.1| ribosome recycling factor (ribosome releasing factor) [Bacteroides thetaiotaomicron VPI-5482] gi|251838298|gb|EES66385.1| ribosome-recycling factor [Bacteroides sp. 1_1_6] Length = 186 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 72/180 (40%), Positives = 112/180 (62%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L N +++M + +L++ + +R G+ S +LD ++V++YGS VP++ VA ++ + R + Sbjct: 8 LDNAQEKMDMAVMYLEEALAHIRAGKASTRLLDGIRVDSYGSMVPISNVAALSTPDARSI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK M ++E+ I +S+LG+ P G+V+RI +P TEERR L K A E +K Sbjct: 68 TIKPWDKSMFRAIEKAIIDSDLGIMPENNGEVIRIGIPPLTEERRRQLAKQCKAEGETAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +SVRN RRDG+D LKK+ K G +ED + E +QKI D IK I+ +K KEIM Sbjct: 128 VSVRNARRDGIDALKKAVKDG-LAEDEQKNAEAKLQKIHDKYIKQIEDMLADKDKEIMTV 186 >gi|21674395|ref|NP_662460.1| ribosome recycling factor [Chlorobium tepidum TLS] gi|25453262|sp|Q8KC49|RRF_CHLTE RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|21647576|gb|AAM72802.1| ribosome recycling factor [Chlorobium tepidum TLS] Length = 186 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 77/180 (42%), Positives = 108/180 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q I+ RM TI + ++ ++RTG+ + ++LD VKVEAYGS +PL QV NV VL+ L Sbjct: 7 IQKIEPRMKKTIEAFQHELASIRTGKATTALLDRVKVEAYGSQMPLKQVGNVGVLDAHTL 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V VWDK MV + ER I ++ LGLNP +GQ +RI +P TEERR VK+ + E SK Sbjct: 67 TVQVWDKSMVGATERAIRDAGLGLNPSADGQNIRISIPPLTEERRKEFVKLTKKFGEDSK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+RN RRD + ++K K SED + + D + K I +K+KEIM Sbjct: 127 VSLRNHRRDLIHEVEKLEKEKLISEDELKRGKKDADDLLHKYEKQITELIAQKEKEIMEV 186 >gi|332665961|ref|YP_004448749.1| ribosome-recycling factor [Haliscomenobacter hydrossis DSM 1100] gi|332334775|gb|AEE51876.1| Ribosome-recycling factor [Haliscomenobacter hydrossis DSM 1100] Length = 188 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 68/186 (36%), Positives = 116/186 (62%), Gaps = 3/186 (1%) Query: 3 QVIDL--QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 + IDL ++ +++M I LK ++ + TG+ SP+++ + V YG+ P++QVA+V+ Sbjct: 4 EEIDLIMEDAEEQMDKAIEHLKIELSKITTGKASPALVTSLMVAYYGTPTPMSQVASVST 63 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R +V+ W++ M+A +E+ I E+NLG+ P+ +GQV+R+ +P TEERR LVK Sbjct: 64 SDSRTIVIQPWERSMLAPIEKSIFEANLGVTPMNDGQVVRLSIPPLTEERRRDLVKRCAH 123 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E+SK+ VR+ RRD ++ +KK+ K+G ED+ LE D ++ I +D + K+ Sbjct: 124 LGEESKVGVRSGRRDAIEAIKKAVKNG-TPEDLGKKLEEDADNLSKRYIGQVDELVKGKE 182 Query: 181 KEIMHF 186 KEIM Sbjct: 183 KEIMTI 188 >gi|304414212|ref|ZP_07395580.1| ribosome recycling factor [Candidatus Regiella insecticola LSR1] gi|304283426|gb|EFL91822.1| ribosome recycling factor [Candidatus Regiella insecticola LSR1] Length = 185 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 71/165 (43%), Positives = 103/165 (62%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 N +RM I+ + +RTGR SPS+LD +KVE YGS PL Q+A+V + R L + Sbjct: 8 NAIERMEKCIATFQTQSSRIRTGRASPSILDGIKVEYYGSATPLRQLASVVAEDARTLAI 67 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 V+D+ +++ VE+ I S+LGLNP G +RIP+P TEERR L+K+ AE S+++ Sbjct: 68 DVFDRNLISVVEKAIIASDLGLNPSSAGSRIRIPLPPLTEERRKELIKIVGQDAENSRVA 127 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNID 173 +RN+RRD + +K K SED ++ IQK+TD +IK ID Sbjct: 128 IRNVRRDANEKIKVLLKDKAISEDEERQAQDKIQKLTDGSIKKID 172 >gi|311744119|ref|ZP_07717925.1| ribosome recycling factor [Aeromicrobium marinum DSM 15272] gi|311313249|gb|EFQ83160.1| ribosome recycling factor [Aeromicrobium marinum DSM 15272] Length = 185 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 61/180 (33%), Positives = 101/180 (56%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ +M + +++ +RTGR P+M + + YG+ PL Q+A V EPR + Sbjct: 6 LREADTKMAKAVEHTREEFAAIRTGRAHPAMFAQITADYYGTPTPLQQLAGFQVPEPRTV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +D +++ER I +S+LG+NP +G+VLR+ +PE TEERR VK+A AE K Sbjct: 66 IISPYDAGAKSAIERAIRDSDLGVNPTDDGKVLRVSLPELTEERRKEYVKLARTKAEDGK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I+VRN+RR+ L ++ K + S+D E + +T + ID + K+ E+ Sbjct: 126 IAVRNLRRNAKQALDRAEKESEISKDDNTGAEKRLDALTKKYVDLIDEVLKGKEAELTEV 185 >gi|319953568|ref|YP_004164835.1| ribosome recycling factor [Cellulophaga algicola DSM 14237] gi|319422228|gb|ADV49337.1| ribosome recycling factor [Cellulophaga algicola DSM 14237] Length = 185 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 70/188 (37%), Positives = 102/188 (54%), Gaps = 5/188 (2%) Query: 1 MNQVID--LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 MN+ I L + + M +I L K +R G+ +P ML V V+ YGS PL QVANV Sbjct: 1 MNEEITFILDSTNESMNGSIDHLVKAFAKIRAGKANPIMLSSVMVDYYGSQTPLAQVANV 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 + + R L V W+K M+ +E+ I +NLG NP+ G + I VP TEERR L K A Sbjct: 61 STPDARTLTVQPWEKNMLQPIEKAIMIANLGFNPMNNGDFIIISVPPLTEERRRDLAKQA 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 AE +K+ +RN R++ ++ ASED+ + E DIQ++T+ + I+ Sbjct: 121 KGEAEDAKVGIRNARQEANKEIRAL---DDASEDLKKNAEADIQELTNKFSRKIEEVLTV 177 Query: 179 KKKEIMHF 186 K+ EIM Sbjct: 178 KEAEIMKV 185 >gi|315604533|ref|ZP_07879596.1| ribosome recycling factor [Actinomyces sp. oral taxon 180 str. F0310] gi|315313545|gb|EFU61599.1| ribosome recycling factor [Actinomyces sp. oral taxon 180 str. F0310] Length = 185 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 59/180 (32%), Positives = 99/180 (55%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +D+M + + +RTGR + SM + + V+ YG+ P+ Q+A+ + E R + Sbjct: 6 LLEAEDKMDKAVDSASHEFANIRTGRATSSMFEQLMVDYYGAPTPMQQLASFQIPEARTV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +D+ + R + ES+LG+NP +G V+R+ +P TEERR VK A + AE + Sbjct: 66 LISPFDRTATQEIIRTLRESDLGVNPTDDGNVVRVVLPALTEERRKEYVKQAKSKAEDGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +SVR +RR D L + +K G+ SED A E + +T + ID K+ E++ Sbjct: 126 VSVRGVRRKAKDQLDRLKKDGEVSEDDTARAEKSLDAMTKAHTDKIDKMLATKESELLTI 185 >gi|254303395|ref|ZP_04970753.1| ribosome recycling factor [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323587|gb|EDK88837.1| ribosome recycling factor [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 190 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 77/179 (43%), Positives = 115/179 (64%), Gaps = 2/179 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +++M TI +K+ +R GR + SMLD VKVE YGS VPLNQ+ V+ E R+L Sbjct: 9 VKECEEKMLKTIEAVKEKFTAIRAGRANVSMLDGVKVENYGSEVPLNQIGTVSAPEARLL 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK +++ +E+ + +NLG+ P +G+V+R+ +PE T +RR VK+A AE K Sbjct: 69 VIDPWDKSLISKIEKALLAANLGMTPNNDGRVIRLVLPELTADRRKEYVKLAKNEAENGK 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGK--ASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 I+VRNIR+D +HLKK K + SED + E +Q +TD +K ID F +K+KEI Sbjct: 129 IAVRNIRKDINNHLKKLEKDKENPISEDELKKEEATVQTLTDKYVKEIDDLFAKKEKEI 187 >gi|162447997|ref|YP_001621129.1| ribosome recycling factor [Acholeplasma laidlawii PG-8A] gi|189044043|sp|A9NHC3|RRF_ACHLI RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|161986104|gb|ABX81753.1| ribosome recycling factor [Acholeplasma laidlawii PG-8A] Length = 184 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 67/188 (35%), Positives = 111/188 (59%), Gaps = 6/188 (3%) Query: 1 MNQVID--LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 MN+ D L I+++M ++ L ++ +RTGR +P++LD + V YG PL QVA++ Sbjct: 1 MNEQADMILLEIEEKMEKSLEALGREYAAVRTGRANPNILDRIMVSYYGVDTPLKQVASI 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 +V E + L + +DK ++ +E I+ S+L L P +G +R+ +P T ERR +LVK Sbjct: 61 SVPEAQQLYIKPFDKSILKDIETAINTSSLELPPRNDGTGIRLTLPALTGERRRSLVKDV 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 AE K+++R+IRRDG +HLKK +ED D+Q +TD+ +K +D +E Sbjct: 121 EKMAEAGKVAIRHIRRDGNEHLKKL----GLTEDDEKGYLEDVQALTDAYVKKVDELTKE 176 Query: 179 KKKEIMHF 186 K +E++ Sbjct: 177 KSEELLDV 184 >gi|237741356|ref|ZP_04571837.1| ribosome Recycling Factor [Fusobacterium sp. 4_1_13] gi|229430888|gb|EEO41100.1| ribosome Recycling Factor [Fusobacterium sp. 4_1_13] Length = 190 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 114/179 (63%), Gaps = 2/179 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +++M TI +K+ +R GR + SMLD +KVE YGS VPLNQ+ V+ E R+L Sbjct: 9 VKECEEKMLKTIEAVKEKFTAIRAGRANVSMLDGIKVENYGSEVPLNQIGTVSAPEARLL 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK +++ +E+ + +NLG+ P +G+V+R+ +PE T +RR VK+A AE K Sbjct: 69 VIDPWDKSLISKIEKALLAANLGMTPNNDGRVIRLVLPELTADRRKEYVKLAKNEAENGK 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGK--ASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 I+VRNIR+D +HLKK K + SED + E +Q +TD +K ID +K+KEI Sbjct: 129 IAVRNIRKDINNHLKKLEKDKENPISEDELKKEETRVQTLTDKYVKEIDDLLAKKEKEI 187 >gi|315223859|ref|ZP_07865707.1| ribosome recycling factor [Capnocytophaga ochracea F0287] gi|314946189|gb|EFS98190.1| ribosome recycling factor [Capnocytophaga ochracea F0287] Length = 184 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 71/188 (37%), Positives = 110/188 (58%), Gaps = 6/188 (3%) Query: 1 MNQVID--LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 MN+ I+ L+ + M + + L K + +R G+ SP M+ V V+ YG+ PL+QVANV Sbjct: 1 MNEEINIILETTSEAMQEALQHLDKALANIRAGKASPQMVSSVMVDYYGAQTPLSQVANV 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 + + R + + W+K+M+ +E+ I +NLG NP+ G+++ I VP TEERR LVK A Sbjct: 61 SAPDSRTISIQPWEKKMIQPIEKAIQIANLGFNPMNNGEMVIITVPPLTEERRKELVKQA 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 E +KISVRN R+D +KK +AS+D+ E +QK+TD IK ++ Sbjct: 121 KGEGEDAKISVRNARQDANKEIKKV----EASDDVKKEAEERVQKLTDKYIKKVEEVLAV 176 Query: 179 KKKEIMHF 186 K+ EI+ Sbjct: 177 KEAEILKV 184 >gi|330807784|ref|YP_004352246.1| ribosome recycling factor [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375892|gb|AEA67242.1| ribosome recycling factor [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 185 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 63/179 (35%), Positives = 100/179 (55%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM ++ L + +RTG+ PS+L+ V V YGS P+ QVAN+TV + R L Sbjct: 7 KDAEQRMQKSLESLAHNFGRIRTGQAHPSILEGVMVPYYGSDTPIKQVANITVKDARTLQ 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +++ M+ +V++ I + L LNP G++L I +P TEE R K A AE +++ Sbjct: 67 VVAFERNMLGAVDKAIGSAGLNLNPTNLGELLLISMPALTEETRKGFTKQARDVAEDARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD LK K + SED +I +T + ID+ +K+K++M Sbjct: 127 AVRNIRRDANSQLKDLVKEKEISEDEERRATGEIDDLTKKYVAKIDADLAQKEKDLMAV 185 >gi|320109136|ref|YP_004184726.1| ribosome recycling factor [Terriglobus saanensis SP1PR4] gi|319927657|gb|ADV84732.1| ribosome recycling factor [Terriglobus saanensis SP1PR4] Length = 194 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 71/178 (39%), Positives = 108/178 (60%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 I+ RM T+ + ++ +RTGR S MLD ++V+ YGS +P+NQ+A V+ E ++VV Sbjct: 17 QIQTRMNKTVDDFRASLVGVRTGRASVHMLDAIRVDYYGSEMPVNQLATVSTPEATLIVV 76 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 S +D +V +E+ I S G NP+ +G+V+RIP+P TEERR VK + E K S Sbjct: 77 SPFDPTVVPMIEKAIRNSGQGFNPMHDGKVIRIPIPPMTEERRKEAVKQLASVLEDHKTS 136 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +RNIRRDG D +KK+ K S D + Q +TD+ IK ++ F+ K+KE++ Sbjct: 137 IRNIRRDGNDTIKKATKDKLISADDEKRAMEETQAMTDTEIKRVEDLFKAKEKEVLSL 194 >gi|222824490|ref|YP_002576064.1| ribosome releasing factor [Campylobacter lari RM2100] gi|254809499|sp|B9KE24|RRF_CAMLR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|222539711|gb|ACM64812.1| ribosome releasing factor [Campylobacter lari RM2100] Length = 185 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 66/186 (35%), Positives = 109/186 (58%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ Q K + ++ LKKD T+RTG+V+ ++LD V V+ YGS PLNQVA V Sbjct: 2 LNEIYTKQ--KQQSDKSLEALKKDFTTIRTGKVNINILDHVHVDYYGSQTPLNQVATVLA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + + ++ W+K M+ ++E I +N+G+NP +G+ +++ P T E+R K A A Sbjct: 60 TDASTISITPWEKPMLKTIESAIAAANIGVNPNNDGESVKLFFPPMTREQREENAKSAKA 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 EK+K+++RNIR+D D +KK K SED +++QK TD+ ID + K+ Sbjct: 120 MGEKAKVAIRNIRKDANDAVKKLEKDKAISEDEAKKAYDEVQKQTDNYTTKIDELVKNKE 179 Query: 181 KEIMHF 186 E++ Sbjct: 180 AELLKV 185 >gi|299136134|ref|ZP_07029318.1| ribosome recycling factor [Acidobacterium sp. MP5ACTX8] gi|298602258|gb|EFI58412.1| ribosome recycling factor [Acidobacterium sp. MP5ACTX8] Length = 194 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 70/177 (39%), Positives = 110/177 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + +K RM T + +++++RTGR S MLD VKV+ YG+ + QVA VT E ++V Sbjct: 16 EELKSRMDKTAEDFRANLLSVRTGRASVHMLDNVKVDYYGTETAIAQVAQVTTPEANLIV 75 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V W++ +V ++E+ I S+ G NP+ +G+++R+P+P TEERR +K E K Sbjct: 76 VQPWEQSLVQAIEKAIRTSSQGFNPMHDGKIIRVPIPPMTEERRREGIKQLAGVLEDHKT 135 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 S+RNIRRDG + +KK+ K S D +IQ++TDS IK ++ F+ K+KE+M Sbjct: 136 SIRNIRRDGNETVKKAAKDKLISADDEKRANEEIQQLTDSQIKRVEDLFKAKEKEVM 192 >gi|148270514|ref|YP_001244974.1| ribosome recycling factor [Thermotoga petrophila RKU-1] gi|166231525|sp|A5IMH5|RRF_THEP1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|147736058|gb|ABQ47398.1| ribosome recycling factor [Thermotoga petrophila RKU-1] Length = 185 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 78/180 (43%), Positives = 122/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K++M T+ ++ ++ +RTG+ SP++L+ +KV+ YG P+NQ+A ++V E R L Sbjct: 6 IKEAKEKMKKTLERIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISVSEERTL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK +++ +E+ I+ S+LGLNPI +G V+R+ P T E+R VK A E+ K Sbjct: 66 VIKPWDKSVLSLIEKAINASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIVEEGK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIRRD + +K+ +K GK ED LEN+IQK+TD I+N+D FE KK+EIM F Sbjct: 126 IAIRNIRRDILKKIKEDQKEGKIPEDDAKRLENEIQKLTDEFIENLDKVFEIKKEEIMEF 185 >gi|295396951|ref|ZP_06807073.1| ribosome recycling factor [Aerococcus viridans ATCC 11563] gi|294974804|gb|EFG50509.1| ribosome recycling factor [Aerococcus viridans ATCC 11563] Length = 186 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 71/180 (39%), Positives = 112/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ KDRM + + + +R G + S+LD + VE YG L Q+A +T+ EPRML Sbjct: 7 LKETKDRMVKSEEAFTRTLARIRAGVANASLLDGITVEYYGVPTDLRQLATITIPEPRML 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +S +DK + +ER + +S+LG+ P +G V+R+ +P T+ERR L K E +K Sbjct: 67 QISPYDKSSLNDIERALQQSDLGIPPTNDGSVIRLIIPALTQERRKELSKTVGKDLEDAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIRRD +D KK+ K+ + +ED V S E+DIQ +T++ IKN++ +K+ EIM+ Sbjct: 127 IAIRNIRRDAIDETKKAEKAKEITEDDVRSYESDIQDLTNAAIKNVEKIASDKEDEIMNV 186 >gi|291514370|emb|CBK63580.1| ribosome recycling factor [Alistipes shahii WAL 8301] Length = 185 Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats. Identities = 70/186 (37%), Positives = 110/186 (59%), Gaps = 1/186 (0%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ L RM I L+++++ +R G+ SP+ L+ V V+ +GS VP++ A+VTV Sbjct: 1 MDTKTILNEATGRMQKAIDHLEEELLNVRAGKASPNALNGVMVDYFGSQVPVSGAASVTV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R +++ WDK M+ +E+ I +SN+GL P G+ +R+ +P TEERR LVK A Sbjct: 61 PDARTILIQPWDKNMLRPIEKAIIDSNIGLTPSNNGEQIRLTIPPLTEERRKELVKQVRA 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE ++IS+RN RRD ++ KK++K G ED E QK+ + K +D +K+ Sbjct: 121 EAETARISLRNARRDAVEAFKKAQKEG-MPEDESKDGETQSQKLLEKFSKTLDEALSKKE 179 Query: 181 KEIMHF 186 KEIM Sbjct: 180 KEIMTV 185 >gi|269977913|ref|ZP_06184867.1| ribosome recycling factor [Mobiluncus mulieris 28-1] gi|306819219|ref|ZP_07452930.1| ribosome recycling factor [Mobiluncus mulieris ATCC 35239] gi|307700228|ref|ZP_07637269.1| ribosome recycling factor [Mobiluncus mulieris FB024-16] gi|269933879|gb|EEZ90459.1| ribosome recycling factor [Mobiluncus mulieris 28-1] gi|304648001|gb|EFM45315.1| ribosome recycling factor [Mobiluncus mulieris ATCC 35239] gi|307614610|gb|EFN93838.1| ribosome recycling factor [Mobiluncus mulieris FB024-16] Length = 185 Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats. Identities = 56/180 (31%), Positives = 98/180 (54%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ K +M + K + T+RTGR + +M D + VE YGS PL Q+A+ + E R + Sbjct: 6 LKDTKTKMQKAVEATKDEFATIRTGRANAAMFDGIVVEYYGSPTPLKQLASFNIPEARTV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D+ + I ES+LG+ P +G+ +R+ +P TE+RR VK A AE+ + Sbjct: 66 IIQPFDRNATQDIIHAISESDLGVTPTDDGKTIRVVLPALTEDRRKEYVKQAKTKAEEGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+R IRR D ++ +K ED V ++ +T +D+ E+K+ ++M Sbjct: 126 VSIRGIRRKAKDAMEALKKDKTLGEDEVERGVKELDTVTKKFTDEVDTLLEDKETDLMTV 185 >gi|160885096|ref|ZP_02066099.1| hypothetical protein BACOVA_03094 [Bacteroides ovatus ATCC 8483] gi|237714925|ref|ZP_04545406.1| ribosome recycling factor [Bacteroides sp. D1] gi|237718246|ref|ZP_04548727.1| ribosome recycling factor [Bacteroides sp. 2_2_4] gi|260174237|ref|ZP_05760649.1| ribosome recycling factor [Bacteroides sp. D2] gi|262406807|ref|ZP_06083356.1| ribosome recycling factor [Bacteroides sp. 2_1_22] gi|293368761|ref|ZP_06615365.1| ribosome recycling factor [Bacteroides ovatus SD CMC 3f] gi|294647222|ref|ZP_06724821.1| ribosome recycling factor [Bacteroides ovatus SD CC 2a] gi|294809166|ref|ZP_06767882.1| ribosome recycling factor [Bacteroides xylanisolvens SD CC 1b] gi|298483675|ref|ZP_07001850.1| ribosome recycling factor [Bacteroides sp. D22] gi|315922506|ref|ZP_07918746.1| conserved hypothetical protein [Bacteroides sp. D2] gi|156109446|gb|EDO11191.1| hypothetical protein BACOVA_03094 [Bacteroides ovatus ATCC 8483] gi|229445250|gb|EEO51041.1| ribosome recycling factor [Bacteroides sp. D1] gi|229452430|gb|EEO58221.1| ribosome recycling factor [Bacteroides sp. 2_2_4] gi|262355510|gb|EEZ04601.1| ribosome recycling factor [Bacteroides sp. 2_1_22] gi|292636066|gb|EFF54554.1| ribosome recycling factor [Bacteroides ovatus SD CMC 3f] gi|292637509|gb|EFF55928.1| ribosome recycling factor [Bacteroides ovatus SD CC 2a] gi|294443560|gb|EFG12311.1| ribosome recycling factor [Bacteroides xylanisolvens SD CC 1b] gi|295084688|emb|CBK66211.1| ribosome recycling factor [Bacteroides xylanisolvens XB1A] gi|298270245|gb|EFI11831.1| ribosome recycling factor [Bacteroides sp. D22] gi|313696381|gb|EFS33216.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 186 Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats. Identities = 75/180 (41%), Positives = 111/180 (61%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L N +++M I +L++ + +R G+ S +LD ++V++YGS VP++ VA +T + R + Sbjct: 8 LDNAQEKMDMAIMYLEEALAHIRAGKASARLLDGIRVDSYGSMVPISNVAAITTPDARSI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK M +E+ I +S+LG+ P G+++RI +P TEERR L K E +K Sbjct: 68 VIKPWDKSMFRVIEKAIIDSDLGIMPENNGEMIRIGIPPLTEERRKQLAKQCKGEGETAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +SVRN RRDG+D LKK+ K G +ED + E +QKI D IK ID EK KEIM Sbjct: 128 VSVRNARRDGIDALKKAVKDG-LAEDEQKNAEAKLQKIHDKYIKQIDDMLAEKDKEIMTV 186 >gi|323456603|gb|EGB12470.1| hypothetical protein AURANDRAFT_58615 [Aureococcus anophagefferens] Length = 171 Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats. Identities = 73/173 (42%), Positives = 109/173 (63%), Gaps = 2/173 (1%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M +I L+ ++ TLRTGR SP +L V V+ YG+ PLNQ+A+V+V LVVS +DK Sbjct: 1 MDKSIGALRNNLGTLRTGRASPDILARVVVDYYGAETPLNQLASVSVSSGTQLVVSPYDK 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 + +VE I ++NLG+ P +G+++R+ VP TE+RR ++K A A E +K+++RNIR Sbjct: 61 SSLGAVESAIVDANLGMAPNNDGELIRLNVPALTEDRRKEILKQAKAVGEDAKVAIRNIR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 + +KK K SED+ N+IQK+TD IK++D K+KEIM Sbjct: 121 KGANSDVKKQGKD--LSEDVAKDANNEIQKLTDKLIKSVDEVVAAKEKEIMTV 171 >gi|299147798|ref|ZP_07040861.1| ribosome recycling factor [Bacteroides sp. 3_1_23] gi|298513981|gb|EFI37867.1| ribosome recycling factor [Bacteroides sp. 3_1_23] Length = 186 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 75/180 (41%), Positives = 112/180 (62%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+N +++M I +L++ + +R G+ S +LD ++V++YGS VP++ VA +T + R + Sbjct: 8 LENAQEKMDMAIMYLEEALAHIRAGKASARLLDGIRVDSYGSMVPISNVAAITTPDARSI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK M +E+ I +S+LG+ P G+++RI +P TEERR L K E +K Sbjct: 68 VIKPWDKSMFRVIEKAIIDSDLGIMPENNGEMIRIGIPPLTEERRKQLAKQCKGEGETAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +SVRN RRDG+D LKK+ K G +ED + E +QKI D IK ID EK KEIM Sbjct: 128 VSVRNARRDGIDALKKAVKDG-LAEDEQKNAEAKLQKIHDKYIKQIDDMLAEKDKEIMTV 186 >gi|242310135|ref|ZP_04809290.1| ribosome recycling factor [Helicobacter pullorum MIT 98-5489] gi|239523432|gb|EEQ63298.1| ribosome recycling factor [Helicobacter pullorum MIT 98-5489] Length = 186 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 64/179 (35%), Positives = 112/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++ M +I +KK+ TLR+G+VS ++LD ++++ Y + PLNQV +V + +V Sbjct: 8 NHTQETMNKSIEAMKKEFGTLRSGKVSVAILDHIRIDYYDTPTPLNQVGSVIAQDASTIV 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+ W+K ++ +ER I E+N+G+NP +G+ +++ P T E+R + K A EK+KI Sbjct: 68 VTPWEKNLLKEIERAIQEANIGVNPNNDGEAIKLFFPPMTSEQRKEIAKEAKNIGEKAKI 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIR+D D +KK K SED +++IQK TD+ +K ID + K++E++ Sbjct: 128 AIRNIRKDSNDKVKKLEKDKTISEDESKKAQDEIQKFTDNAVKKIDELVKHKEEELLKI 186 >gi|300870157|ref|YP_003785028.1| Ribosome recycling factor [Brachyspira pilosicoli 95/1000] gi|300687856|gb|ADK30527.1| Ribosome recycling factor [Brachyspira pilosicoli 95/1000] Length = 182 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 77/176 (43%), Positives = 112/176 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ KDRM I+ L+ D+ +RTGR + S+LD VKVEAYGS +PL QV NV+ + + ++ Sbjct: 4 ESYKDRMEKAINSLQNDLKGIRTGRANASILDGVKVEAYGSSMPLKQVGNVSTPDAKTIM 63 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +DK +V +E+ I +++LG NP +G +RI VPE T+ERR L K E++KI Sbjct: 64 IQPFDKALVGDIEKAILKADLGFNPFNDGGNIRIMVPELTKERREELKKGVRHRGEEAKI 123 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 ++RNIRRD D +KK K +ED +LE IQ TDS IK +D K+KE+ Sbjct: 124 AIRNIRRDENDIIKKDLKDKTITEDESKNLEKKIQNDTDSYIKKVDELITSKEKEL 179 >gi|294786947|ref|ZP_06752201.1| ribosome recycling factor [Parascardovia denticolens F0305] gi|315226584|ref|ZP_07868372.1| ribosome recycling factor [Parascardovia denticolens DSM 10105] gi|294485780|gb|EFG33414.1| ribosome recycling factor [Parascardovia denticolens F0305] gi|315120716|gb|EFT83848.1| ribosome recycling factor [Parascardovia denticolens DSM 10105] Length = 183 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 65/180 (36%), Positives = 105/180 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + +M TI K++ + +RTGR +P++ + + V+ YG+ L +A++ V + R L Sbjct: 4 VDEASSQMDKTIETTKENFVGIRTGRANPALFNGLTVDYYGAPTSLKALASIGVADNRTL 63 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +D S+E+ I +S+LG+NP +G V+ + +PE TEERR VK+AH AE+ K Sbjct: 64 SVTPFDVTQAGSIEKAIRDSDLGVNPRRDGNVIHVTLPELTEERRKDYVKLAHEIAERGK 123 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRR + + K+ K G ED L D+ K T + ID+ E K+KEI+ Sbjct: 124 VAVRNIRRKTKEGIDKATKDGDFGEDEGKRLLTDLDKATKKATEEIDTLLETKEKEILSV 183 >gi|51473353|ref|YP_067110.1| ribosome recycling factor [Rickettsia typhi str. Wilmington] gi|60390689|sp|Q68XL4|RRF_RICTY RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|51459665|gb|AAU03628.1| ribosome recycling factor [Rickettsia typhi str. Wilmington] Length = 186 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 84/177 (47%), Positives = 117/177 (66%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 ++++M I L ++ LRTGR S + LD V VEAYGS VPL QVA+++ + R + V Sbjct: 10 LQEKMEKAIKVLGNELKGLRTGRASVNFLDSVTVEAYGSKVPLAQVASLSTPDARTINVQ 69 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 VWDK MV+SVE+GI +NLGL +GQ++R+P+P TEERR VK+AH Y E++KIS+ Sbjct: 70 VWDKSMVSSVEKGITIANLGLTHATDGQLIRLPIPSLTEERRKEFVKLAHKYGEETKISL 129 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RNIRRDG++ LKK K +D SL +QK+TD +DS ++K+ EIM Sbjct: 130 RNIRRDGIEELKKLEKDNIIVKDEYHSLSEQVQKLTDEYSSKVDSAIKQKEHEIMTV 186 >gi|237743351|ref|ZP_04573832.1| ribosome Recycling Factor [Fusobacterium sp. 7_1] gi|256028469|ref|ZP_05442303.1| ribosome recycling factor (RRF) [Fusobacterium sp. D11] gi|260495029|ref|ZP_05815158.1| ribosome recycling factor [Fusobacterium sp. 3_1_33] gi|289766390|ref|ZP_06525768.1| ribosome Recycling Factor [Fusobacterium sp. D11] gi|229433130|gb|EEO43342.1| ribosome Recycling Factor [Fusobacterium sp. 7_1] gi|260197472|gb|EEW94990.1| ribosome recycling factor [Fusobacterium sp. 3_1_33] gi|289717945|gb|EFD81957.1| ribosome Recycling Factor [Fusobacterium sp. D11] Length = 190 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 113/179 (63%), Gaps = 2/179 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +++M TI +K+ +R GR + SMLD VKV+ YGS VPLNQ+ V+ E R+L Sbjct: 9 VKECEEKMLKTIEAVKEKFTAIRAGRANVSMLDGVKVDNYGSEVPLNQIGTVSAPEARLL 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK +++ +E+ + +NLG+ P +G+V+R+ +PE T ERR VK+A AE K Sbjct: 69 VIDPWDKSLISKIEKALLAANLGMTPNNDGRVIRLVLPELTAERRKEYVKLAKNEAENGK 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGK--ASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 I+VRNIR+D + LKK K + SED + E +Q +TD +K ID +K+KEI Sbjct: 129 IAVRNIRKDINNRLKKLEKDKENPISEDELKKEETRVQTLTDKYVKEIDELLAKKEKEI 187 >gi|118443357|ref|YP_878219.1| ribosome recycling factor [Clostridium novyi NT] gi|166230781|sp|A0Q0R7|RRF_CLONN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|118133813|gb|ABK60857.1| ribosome recycling factor [Clostridium novyi NT] Length = 185 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 78/180 (43%), Positives = 119/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M +IS LKKD+ +++ G+ +P+MLD V VE YGS P+NQ+ANV+ EPR+L Sbjct: 6 LNKSEEKMLKSISVLKKDLGSMKAGKANPAMLDRVNVEYYGSETPINQLANVSSPEPRVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WDK + +E+ I +S+LGLNP +G V+R+ +PE TEE R +VK E+SK Sbjct: 66 LIQPWDKNSLKDIEKAILQSDLGLNPSNDGSVIRLIIPELTEETRKDIVKKVKKIGEESK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++R+IRR+G D +K +K+ +ED E+ +QKITD I ID+ K+KE+M Sbjct: 126 IAIRSIRREGNDKIKNLKKNNDITEDEAKEGESSVQKITDKYITEIDNIVSAKEKEVMSV 185 >gi|212695690|ref|ZP_03303818.1| hypothetical protein ANHYDRO_00207 [Anaerococcus hydrogenalis DSM 7454] gi|212677363|gb|EEB36970.1| hypothetical protein ANHYDRO_00207 [Anaerococcus hydrogenalis DSM 7454] Length = 185 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 110/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +++ + M + + +R GR + S+LD + YGS P+NQ A ++ EPR+L Sbjct: 6 IKDTESAMKKACESFEIRISKIRAGRANDSILDGLTFSYYGSQTPINQAATISTPEPRLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK + +E+ I++S++G+NP +G+V+R+P P TEERR L K + Y+E SK Sbjct: 66 VIKPWDKSNIKEIEKAINKSDIGINPQNDGEVIRLPFPALTEERRKDLTKQVNEYSEDSK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I +RNIRRD +D KK KS +ED + S+E DIQKIT I NI+ E K KE++ Sbjct: 126 IQIRNIRRDSLDTAKKGEKSADLTEDDLFSIEEDIQKITKKYIDNIEKIAENKNKELLEV 185 >gi|154489842|ref|ZP_02030103.1| hypothetical protein PARMER_00071 [Parabacteroides merdae ATCC 43184] gi|218258266|ref|ZP_03474668.1| hypothetical protein PRABACTJOHN_00323 [Parabacteroides johnsonii DSM 18315] gi|154089284|gb|EDN88328.1| hypothetical protein PARMER_00071 [Parabacteroides merdae ATCC 43184] gi|218225609|gb|EEC98259.1| hypothetical protein PRABACTJOHN_00323 [Parabacteroides johnsonii DSM 18315] Length = 187 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 69/180 (38%), Positives = 114/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +++M I +L + + +R G+ +P +LD V+V YG+ VPL VA VTV + R + Sbjct: 8 VKAAEEKMTFAIEYLDEQLSHIRAGKANPKILDCVRVMYYGAPVPLTNVATVTVPDARTI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ W+K+++ +E+GI +S +G+ P G+V+R+ +P TEERR L K + AE +K Sbjct: 68 MITPWEKKIIKDIEKGIMDSEVGITPENNGEVIRLGIPPLTEERRRLLAKQSKQEAETAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 IS+RN RRD ++ LKKS K+ ED+ E ++QK+ D IK +D + K+KEIM Sbjct: 128 ISIRNARRDAIEQLKKSIKTDGTPEDVEKDAEAEVQKVHDKYIKKVDELYAAKEKEIMTV 187 >gi|163786583|ref|ZP_02181031.1| ribosome releasing factor [Flavobacteriales bacterium ALC-1] gi|159878443|gb|EDP72499.1| ribosome releasing factor [Flavobacteriales bacterium ALC-1] Length = 184 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 81/188 (43%), Positives = 114/188 (60%), Gaps = 6/188 (3%) Query: 1 MNQVID--LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 MN+ I + K+ M I L+K ++ +R G+ SPSML V V+ YGS PL+QVANV Sbjct: 1 MNEDIKFIIDTAKEAMDSAIKHLEKQLINIRAGKASPSMLGSVMVDYYGSQTPLSQVANV 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 + R + V W+K M+ +ERGI +NLG NP+ G+++ I VP TEERR L K A Sbjct: 61 NTPDGRTISVQPWEKSMLQEIERGIMVANLGFNPMNNGEMVIINVPPLTEERRRDLAKQA 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 A E +KI +RN R+D M+ +K S SED+ + E D+Q++TDS +K ID + Sbjct: 121 KAETEDAKIGIRNARKDAMNDIK----STDVSEDLQKNAEIDVQELTDSYVKRIDDILDL 176 Query: 179 KKKEIMHF 186 K+KEIM Sbjct: 177 KEKEIMTV 184 >gi|86131442|ref|ZP_01050040.1| Ribosome recycling factor [Dokdonia donghaensis MED134] gi|85817887|gb|EAQ39055.1| Ribosome recycling factor [Dokdonia donghaensis MED134] Length = 185 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 77/188 (40%), Positives = 112/188 (59%), Gaps = 5/188 (2%) Query: 1 MNQ--VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 MN+ + + K+ M + I+ L K ++T+R G+ SP+ML + V+ YGS PL+QVANV Sbjct: 1 MNEDLKFIIDSAKEAMDNAITHLGKRLLTIRAGKASPAMLQGLMVDYYGSPTPLSQVANV 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 + R + + W+K ++ +E+ I NLG NP+ G+ + I VP TEERR LVK A Sbjct: 61 VAPDGRTISIQPWEKSIIQEIEKAIINGNLGFNPMNNGESVIINVPPLTEERRKELVKQA 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 A AE +K+ VRN R++ + +KK ASED A+ E DIQK+TD IK I+ Sbjct: 121 KAEAEDAKVGVRNDRKNANNDIKKV---DSASEDEKANAEVDIQKLTDIHIKKIEEVLAN 177 Query: 179 KKKEIMHF 186 K+ EIM Sbjct: 178 KETEIMTV 185 >gi|183601689|ref|ZP_02963059.1| ribosome recycling factor [Bifidobacterium animalis subsp. lactis HN019] gi|241190812|ref|YP_002968206.1| ribosome recycling factor [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196218|ref|YP_002969773.1| ribosome recycling factor [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219295|gb|EDT89936.1| ribosome recycling factor [Bifidobacterium animalis subsp. lactis HN019] gi|240249204|gb|ACS46144.1| ribosome recycling factor [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250772|gb|ACS47711.1| ribosome recycling factor [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793801|gb|ADG33336.1| ribosome recycling factor [Bifidobacterium animalis subsp. lactis V9] Length = 173 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 64/173 (36%), Positives = 103/173 (59%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M ++ K++ +RTGR +P++L+ + VE YG+ PL VA + V EPR L V+ +D Sbjct: 1 MKKSVESTKENFAGIRTGRANPALLNGIVVEYYGAPTPLKHVATIGVPEPRTLSVTPFDP 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 +VE+ + +S+LG +P G + + +PE TE+RR VK+A + AE K++VRNIR Sbjct: 61 SQANAVEKALRDSDLGASPRRNGSAILLTMPELTEDRRKEYVKLAKSKAEDGKVAVRNIR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 R + + K+ K G+ ED L ++ K+T +T +D+ E K+KEIM Sbjct: 121 RKSKEAIDKAVKDGEMGEDEGDRLLKELDKVTKATTDELDALLEAKQKEIMEV 173 >gi|15639592|ref|NP_219042.1| ribosome recycling factor [Treponema pallidum subsp. pallidum str. Nichols] gi|189025830|ref|YP_001933602.1| ribosome recycling factor [Treponema pallidum subsp. pallidum SS14] gi|6094140|sp|O83613|RRF_TREPA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238689331|sp|B2S3J4|RRF_TREPS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|3322898|gb|AAC65577.1| ribosome recycling factor [Treponema pallidum subsp. pallidum str. Nichols] gi|189018405|gb|ACD71023.1| ribosome recycling factor [Treponema pallidum subsp. pallidum SS14] gi|291059975|gb|ADD72710.1| ribosome recycling factor [Treponema pallidum subsp. pallidum str. Chicago] Length = 183 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 67/175 (38%), Positives = 115/175 (65%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 + +M ++S L++ TLRT R + +LD + V+ Y L+QVA V+V E R++++ Sbjct: 8 EQKMKKSLSALQEGFNTLRTERATAHLLDQITVDYYQQPTALSQVATVSVPEARLIIIQP 67 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 WDK ++A +ER I +S L LNP +G+V+R+ +P T+ERR LV+ A A AE++++++R Sbjct: 68 WDKTLLADIERAILKSKLSLNPSNDGKVIRLVIPPLTQERRKELVRQARALAEQARVAIR 127 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 NIRR+G++ K+ K G SED + + E QK TD+++ ++ + EK+K+I+ Sbjct: 128 NIRREGIEEAKRGHKEGLLSEDALKAAEEAFQKATDASVADVARYLAEKEKDILE 182 >gi|157738471|ref|YP_001491155.1| ribosome recycling factor [Arcobacter butzleri RM4018] gi|315635330|ref|ZP_07890598.1| ribosome recycling factor [Arcobacter butzleri JV22] gi|226703250|sp|A8EX12|RRF_ARCB4 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|157700325|gb|ABV68485.1| ribosome releasing factor [Arcobacter butzleri RM4018] gi|315480364|gb|EFU71029.1| ribosome recycling factor [Arcobacter butzleri JV22] Length = 185 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 59/179 (32%), Positives = 107/179 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 K+ M +I LKKD +LRTG+V+ ++LD +KV+ YG+ L+QV +V + + Sbjct: 7 AQTKEHMEKSIEALKKDYKSLRTGKVNTNILDGIKVDYYGTMTDLSQVGSVLATDATTIT 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++ W+K ++ ++E+ I +N+G+NP +GQ++++ P T E+R K A + +K+ Sbjct: 67 INPWEKNLLGTIEKAIQNANIGVNPNNDGQIIKLFFPPMTVEQRQETAKHAKTMTDNAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIR++ + +K K +ED +++IQKITDS + D + K+KEI+ Sbjct: 127 AIRNIRQNSNNKVKTLLKDKAITEDESKKAQDEIQKITDSYVLKADETLKAKEKEILTV 185 >gi|224418730|ref|ZP_03656736.1| ribosome recycling factor [Helicobacter canadensis MIT 98-5491] gi|253826742|ref|ZP_04869627.1| ribosome releasing factor [Helicobacter canadensis MIT 98-5491] gi|253510148|gb|EES88807.1| ribosome releasing factor [Helicobacter canadensis MIT 98-5491] Length = 186 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 62/179 (34%), Positives = 111/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++ M +I +KK+ TLR+G+VS ++LD +++ Y + PLNQ+ +V + +V Sbjct: 8 NHTQESMNKSIESMKKEFSTLRSGKVSVAILDHIRISYYDTPTPLNQIGSVIAQDASTIV 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++ W+K ++ +ER I E+N+G+NP +G+ +++ P T E+R + K A EK+KI Sbjct: 68 ITPWEKNLLKEIERAIQEANIGVNPNNDGETIKLFFPPMTSEQRKEIAKEAKNIGEKAKI 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIR+D D +KK K SED + +IQK+TD+ +K ID + K++E++ Sbjct: 128 AIRNIRKDSNDKVKKLEKDKVVSEDESKKGQEEIQKLTDNAVKKIDELVKHKEEELLKI 186 >gi|15604030|ref|NP_220545.1| ribosome recycling factor [Rickettsia prowazekii str. Madrid E] gi|6226047|sp|Q9ZE08|RRF_RICPR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|3860721|emb|CAA14622.1| RIBOSOME RECYCLING FACTOR (rrf) [Rickettsia prowazekii] gi|292571749|gb|ADE29664.1| Ribosome recycling factor [Rickettsia prowazekii Rp22] Length = 186 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 84/177 (47%), Positives = 120/177 (67%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 ++++M I L ++ LRTGR S + LD V VEAYGS +PL+QVA+++ + R + V Sbjct: 10 LQEKMEKAIKVLGNELKGLRTGRASINFLDSVTVEAYGSKIPLSQVASLSTPDARTINVQ 69 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 VWDK MV+SVE+GI +NLGL +GQ++R+P+P TEERR LVK+AH Y E++KIS+ Sbjct: 70 VWDKSMVSSVEKGITIANLGLTHATDGQLIRLPIPSLTEERRKELVKLAHKYGEETKISL 129 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RNIRRDG++ LKK K +D +L IQK+TD +DS ++K++EIM Sbjct: 130 RNIRRDGIEELKKLEKDNIIVKDEYHNLSEQIQKLTDEYSSKVDSAIKQKEQEIMTV 186 >gi|149194777|ref|ZP_01871872.1| ribosome recycling factor [Caminibacter mediatlanticus TB-2] gi|149135200|gb|EDM23681.1| ribosome recycling factor [Caminibacter mediatlanticus TB-2] Length = 184 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 75/186 (40%), Positives = 114/186 (61%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M +V + K+ M +I LKKD+ TLRTG+VS +LD VKVE YG+ PLNQVAN+ Sbjct: 1 MEEVFEF--AKEHMQKSIEVLKKDLNTLRTGKVSIHVLDGVKVEYYGAPTPLNQVANINA 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 ++ +V+S WDK ++ +E+ I E+N+G NP +G +++ P TEE R K A Sbjct: 59 VDATTIVISPWDKSIINDIEKAIQEANVGANPNNDGDTIKLYFPPMTEEERKKQAKKAKE 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 + EK+KI++RNIRR+ D +KK K+ + +ED + +Q+ITD IK +D +K Sbjct: 119 FGEKAKIAIRNIRREANDEIKKMFKNKEITEDDQKRGLDKVQEITDEFIKKVDEIVNKKI 178 Query: 181 KEIMHF 186 ++M Sbjct: 179 DDVMKV 184 >gi|313142247|ref|ZP_07804440.1| ribosome recycling factor [Helicobacter canadensis MIT 98-5491] gi|313131278|gb|EFR48895.1| ribosome recycling factor [Helicobacter canadensis MIT 98-5491] Length = 184 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 63/186 (33%), Positives = 115/186 (61%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M ++ + + ++ M +I +KK+ TLR+G+VS ++LD +++ Y + PLNQ+ +V Sbjct: 1 MQEIYN--HTQESMNKSIESMKKEFSTLRSGKVSVAILDHIRISYYDTPTPLNQIGSVIA 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + +V++ W+K ++ +ER I E+N+G+NP +G+ +++ P T E+R + K A Sbjct: 59 QDASTIVITPWEKNLLKEIERAIQEANIGVNPNNDGETIKLFFPPMTSEQRKEIAKEAKN 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 EK+KI++RNIR+D D +KK K SED + +IQK+TD+ +K ID + K+ Sbjct: 119 IGEKAKIAIRNIRKDSNDKVKKLEKDKVVSEDESKKGQEEIQKLTDNAVKKIDELVKHKE 178 Query: 181 KEIMHF 186 +E++ Sbjct: 179 EELLKI 184 >gi|225848029|ref|YP_002728192.1| ribosome recycling factor [Sulfurihydrogenibium azorense Az-Fu1] gi|225643308|gb|ACN98358.1| ribosome recycling factor [Sulfurihydrogenibium azorense Az-Fu1] Length = 184 Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats. Identities = 71/180 (39%), Positives = 117/180 (65%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ + RM ++ K+++ +RTGR S +++ +KV+ YGS +PL Q+A ++ EP + Sbjct: 6 LKEAEKRMKGAVAKFKEELTGIRTGRASTGLVENIKVDYYGSEIPLKQLATISTPEPSQI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK V S+E+ + E+NLG NP EG +R+ +P TEERR +VK+ H +AE+++ Sbjct: 66 VIQTWDKSAVKSIEKALIEANLGANPQTEGNTIRLNLPPMTEERRKEVVKIIHKFAEEAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN+RRD ++++K +K G SED V +QK+TD I+ I+ E K+KEI+ Sbjct: 126 VAVRNVRRDEKENIEKLKKEG-FSEDDVKKALEKLQKLTDKYIEEINQLAEAKEKEILSI 184 >gi|326333657|ref|ZP_08199894.1| ribosome recycling factor [Nocardioidaceae bacterium Broad-1] gi|325948563|gb|EGD40666.1| ribosome recycling factor [Nocardioidaceae bacterium Broad-1] Length = 185 Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats. Identities = 61/180 (33%), Positives = 105/180 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +M ++ ++D T+R GR +P M + + V+ YG+ P+ Q+A+ T EPR++ Sbjct: 6 LNEADSKMAKSVDSTREDFATIRAGRATPQMFNKILVDYYGTPTPIQQLASFTSPEPRII 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D +A+VE+ I +S+LG+NP +G++LR PE TEERR +K+A AE+ + Sbjct: 66 NIAPFDIGAMANVEKAIRDSDLGVNPSNDGKILRAVFPELTEERRKEYIKLAKEKAEQGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +SVR +R+ L+K K G+AS+D V E + +T ID + K+ E++ Sbjct: 126 VSVRQVRQKAKQGLEKLEKDGEASKDDVTGAEKRLDSLTKKHTDAIDDLLKSKEAELLEV 185 >gi|150004420|ref|YP_001299164.1| ribosome recycling factor [Bacteroides vulgatus ATCC 8482] gi|212693687|ref|ZP_03301815.1| hypothetical protein BACDOR_03207 [Bacteroides dorei DSM 17855] gi|237708852|ref|ZP_04539333.1| ribosome recycling factor [Bacteroides sp. 9_1_42FAA] gi|254882855|ref|ZP_05255565.1| ribosome recycling factor [Bacteroides sp. 4_3_47FAA] gi|265755888|ref|ZP_06090355.1| ribosome recycling factor [Bacteroides sp. 3_1_33FAA] gi|294775495|ref|ZP_06741007.1| ribosome recycling factor [Bacteroides vulgatus PC510] gi|319643384|ref|ZP_07998010.1| ribosome-recycling factor [Bacteroides sp. 3_1_40A] gi|166230412|sp|A6L1H8|RRF_BACV8 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|149932844|gb|ABR39542.1| ribosome recycling factor [Bacteroides vulgatus ATCC 8482] gi|212663746|gb|EEB24320.1| hypothetical protein BACDOR_03207 [Bacteroides dorei DSM 17855] gi|229457278|gb|EEO62999.1| ribosome recycling factor [Bacteroides sp. 9_1_42FAA] gi|254835648|gb|EET15957.1| ribosome recycling factor [Bacteroides sp. 4_3_47FAA] gi|263233966|gb|EEZ19567.1| ribosome recycling factor [Bacteroides sp. 3_1_33FAA] gi|294450640|gb|EFG19128.1| ribosome recycling factor [Bacteroides vulgatus PC510] gi|317385013|gb|EFV65966.1| ribosome-recycling factor [Bacteroides sp. 3_1_40A] Length = 186 Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats. Identities = 66/180 (36%), Positives = 107/180 (59%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + + +++M + +L++ + +R G+ S +LD ++V++YGS VP++ VA VT + R + Sbjct: 8 INDAQEKMDMAVMYLEEALAHIRAGKASTRLLDGIRVDSYGSMVPISNVAAVTTPDARSI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK M +E+ I +S+LG+ P G+++R+ +P TEERR L K E +K Sbjct: 68 AIKPWDKSMFRIIEKAIMDSDLGITPENNGEIIRLGIPPLTEERRKQLAKQCKGEGETAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+RN RRD +D LKK+ K G ED + E +QK+ D I I+ EK KEIM Sbjct: 128 VSIRNARRDAIDTLKKAVKEG-MPEDEQKNAEAKLQKVHDKYIAKIEELLAEKDKEIMTV 186 >gi|116327676|ref|YP_797396.1| ribosome recycling factor [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330591|ref|YP_800309.1| ribosome recycling factor [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122281654|sp|Q04U69|RRF_LEPBJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|122284528|sp|Q053N2|RRF_LEPBL RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|116120420|gb|ABJ78463.1| Ribosome recycling factor [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124280|gb|ABJ75551.1| Ribosome recycling factor [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 184 Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats. Identities = 78/183 (42%), Positives = 121/183 (66%), Gaps = 2/183 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M + +K +M TI +KKD T+RTGR +PS+++ ++V+ YG+ P+NQ+ N++V Sbjct: 1 MASEEIISGMKTKMDKTIDLVKKDFGTVRTGRANPSLVEDIRVDYYGTLTPINQLGNISV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPRMLV+S +DK ++ +E+ I S LGL P +G V+RI +PE T ERR L K+ + Sbjct: 61 PEPRMLVISPYDKGIMKDIEKAIQASGLGLQPSNDGVVIRIIIPELTGERRKELAKIVKS 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 +E+ K+++RNIRRD M+ LKK + S+D + ++++ IQK TDS I I + EK+ Sbjct: 121 KSEEKKVAIRNIRRDAMEDLKKH--TEGLSQDEIKTIQDRIQKTTDSYIDKISALTAEKE 178 Query: 181 KEI 183 KEI Sbjct: 179 KEI 181 >gi|313207473|ref|YP_004046650.1| ribosome recycling factor [Riemerella anatipestifer DSM 15868] gi|312446789|gb|ADQ83144.1| ribosome recycling factor [Riemerella anatipestifer DSM 15868] gi|315023373|gb|EFT36383.1| Ribosome recycling factor [Riemerella anatipestifer RA-YM] gi|325335067|gb|ADZ11341.1| Ribosome recycling factor [Riemerella anatipestifer RA-GD] Length = 184 Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats. Identities = 73/187 (39%), Positives = 108/187 (57%), Gaps = 4/187 (2%) Query: 1 MNQV-IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVT 59 M ++ + L N + M I L+ + +R GR S +M+ V VE YGS PLNQVANV+ Sbjct: 1 MEEIQLILDNARQEMDAAIKHLEHAFLKIRAGRASTAMVQDVMVEYYGSPTPLNQVANVS 60 Query: 60 VLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 + + + + WD+ + +E+GI SNLG P G + + VP TEERR L K A Sbjct: 61 IPDAMTIAIQPWDRSAIKDIEKGIINSNLGFAPSNNGDTIILNVPPLTEERRKDLAKQAK 120 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 A AE++K++VRN R+D M LKK SED++ EN++Q++TD I ID ++ K Sbjct: 121 AEAEQTKVTVRNARQDAMKDLKKL---DGVSEDIIKDTENEVQQLTDKYISTIDDHYKHK 177 Query: 180 KKEIMHF 186 + +IM Sbjct: 178 EVDIMKI 184 >gi|145343357|ref|XP_001416314.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144576539|gb|ABO94607.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 176 Score = 214 bits (547), Expect = 3e-54, Method: Composition-based stats. Identities = 60/172 (34%), Positives = 104/172 (60%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 +RM T+ + D T+RTGR + ++LD ++V+ YG+ PL +AN + + + + + + Sbjct: 2 ERMEKTMDAIANDFSTVRTGRANAAVLDRIEVDYYGAPTPLKTIANASTPDAQTITIQPF 61 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 DK + +ER I+ES+LG+NP +G ++R+ VP T ERR L K+ E K+++RN Sbjct: 62 DKSAIKDIERAINESDLGMNPSNDGNIIRLNVPPLTAERRKELAKLVSKLGEDGKVALRN 121 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +RRD M +K K+G ED +A L+ ++ +T S +K +D + K+ E+ Sbjct: 122 VRRDAMKAYEKLEKAGSFGEDEIAKLKKSMEDLTASYVKKVDELTKAKETEL 173 >gi|320096225|ref|ZP_08027811.1| ribosome recycling factor [Actinomyces sp. oral taxon 178 str. F0338] gi|319976851|gb|EFW08608.1| ribosome recycling factor [Actinomyces sp. oral taxon 178 str. F0338] Length = 185 Score = 214 bits (547), Expect = 3e-54, Method: Composition-based stats. Identities = 61/180 (33%), Positives = 101/180 (56%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +D+M + + ++RTGR + SM + + VE YG+ P+ Q+A+ + E R + Sbjct: 6 LLEAEDKMDKAVDAASHEFASIRTGRATSSMFEQLSVEYYGAPTPMQQLASFQIPEARTV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +D+ + R + ES+LG+NP +G V+R+ +P TEERR VK A + AE+ + Sbjct: 66 IISPFDRTATQEILRTLRESDLGVNPTDDGNVIRVVLPALTEERRKEYVKQAKSKAEEGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +SVR +RR D L + +K G+ASED V E + T + ID K+ E++ Sbjct: 126 VSVRGVRRKAKDQLDRLKKDGEASEDDVDRAEKALDAATRAHTDQIDKMLAAKESELLTI 185 >gi|281412821|ref|YP_003346900.1| ribosome recycling factor [Thermotoga naphthophila RKU-10] gi|281373924|gb|ADA67486.1| ribosome recycling factor [Thermotoga naphthophila RKU-10] Length = 185 Score = 214 bits (547), Expect = 4e-54, Method: Composition-based stats. Identities = 78/180 (43%), Positives = 122/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K++M T+ ++ ++ +RTG+ SP++L+ +KV+ YG P+NQ+A ++V E R L Sbjct: 6 IKEAKEKMKRTLEKIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISVSEERTL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK +++ +E+ I+ S+LGLNPI +G V+R+ P T E+R VK A E+ K Sbjct: 66 VIKPWDKSVLSLIEKAINASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIVEEGK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIRRD + +K+ +K GK ED LEN+IQK+TD I+N+D FE KK+EIM F Sbjct: 126 IAIRNIRRDILKKIKEDQKEGKIPEDDAKRLENEIQKLTDEFIENLDKVFEIKKEEIMEF 185 >gi|284037276|ref|YP_003387206.1| ribosome recycling factor [Spirosoma linguale DSM 74] gi|283816569|gb|ADB38407.1| ribosome recycling factor [Spirosoma linguale DSM 74] Length = 186 Score = 214 bits (547), Expect = 4e-54, Method: Composition-based stats. Identities = 70/185 (37%), Positives = 113/185 (61%), Gaps = 2/185 (1%) Query: 1 MNQV-IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVT 59 M ++ + L + KD M + L ++ +R G+ + MLD ++VE YG PL+ VA++ Sbjct: 1 MEEIELFLDDAKDTMEKALKHLAIELTKIRAGKANAGMLDGIQVEYYGMLSPLHTVASIN 60 Query: 60 VLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 + R +V+ +++++++ VE+ I SNLGLNP +G+ +R+ +P TEERR LVK Sbjct: 61 TPDARTIVIKPFERKLISEVEKAIRNSNLGLNPNNDGEQIRLSIPPLTEERRRDLVKKVK 120 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 E +K++VRNIR+D D ++K K G SED V E +QK+TD+ I ID F K Sbjct: 121 QEVETAKVNVRNIRKDTNDDIRKLVKDG-VSEDAVKVGEERVQKLTDAFIARIDETFVAK 179 Query: 180 KKEIM 184 +++IM Sbjct: 180 ERDIM 184 >gi|148244406|ref|YP_001219100.1| ribosome recycling factor [Candidatus Vesicomyosocius okutanii HA] gi|166231527|sp|A5CXD6|RRF_VESOH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|146326233|dbj|BAF61376.1| ribosome recycling factor [Candidatus Vesicomyosocius okutanii HA] Length = 185 Score = 214 bits (547), Expect = 4e-54, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 111/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 QN +++M +I+ LK +R R PS+L+ + + YGS VPL+QVAN++ + R L Sbjct: 7 QNSQNKMNKSINSLKNAFSKIRASRAHPSLLEQIHINYYGSMVPLSQVANISTEDSRTLK 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 S W+K+MV+ +E+ I S+LGLNP GQV+RI +P T+ERR LVK+ AEK+KI Sbjct: 67 ASPWEKDMVSVIEKAIMTSDLGLNPQTIGQVIRIHLPPLTQERRGELVKIIKDEAEKAKI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RNIRRD K+ K + S+D E DIQKITD IK I+ +K+ ++ Sbjct: 127 AIRNIRRDANSDFKELLKEKEISKDEARKAEYDIQKITDEYIKKIEINLNKKEDSLLEI 185 >gi|325849053|ref|ZP_08170545.1| ribosome recycling factor [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480298|gb|EGC83361.1| ribosome recycling factor [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 185 Score = 214 bits (547), Expect = 4e-54, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 110/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +++ + M + + +R GR + S+LD + YGS P+NQ A ++ EPR+L Sbjct: 6 IKDTESAMKKACESFEIRISKIRAGRANDSILDGLTFSYYGSQTPINQAATISTPEPRLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK + +E+ I++S++G+NP +G+V+R+P P TEERR L K + Y+E SK Sbjct: 66 VIKPWDKSNIKEIEKAINKSDIGINPQNDGEVIRLPFPALTEERRKDLTKQVNDYSEDSK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I +RNIRRD +D KK KS +ED + S+E DIQKIT I NI+ E K KE++ Sbjct: 126 IQIRNIRRDSLDVAKKGEKSADLTEDDLFSIEEDIQKITKKYIDNIEKIAENKNKELLEV 185 >gi|298207395|ref|YP_003715574.1| ribosome recycling factor [Croceibacter atlanticus HTCC2559] gi|83850031|gb|EAP87899.1| ribosome recycling factor [Croceibacter atlanticus HTCC2559] Length = 185 Score = 214 bits (546), Expect = 4e-54, Method: Composition-based stats. Identities = 72/180 (40%), Positives = 104/180 (57%), Gaps = 3/180 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + + K+ M I L+K ++ +R G+ SP+ML V V+ YGS PLNQV NV + R + Sbjct: 9 IDSTKEDMEKAIKHLEKKLINIRAGKASPAMLSGVMVDYYGSPTPLNQVGNVNTPDARTI 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + ++K M+ +E+ I +NLG NP+ G+ + I VP TEERR L K A AE+SK Sbjct: 69 SIQPFEKSMIQEIEKAIMNANLGFNPMNNGESVIINVPPLTEERRKELAKQAKNEAEESK 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I VRN R++ +KK ASED+ + E D+Q +TD I ID + K+ EIM Sbjct: 129 IGVRNDRKNANQEIKKLE---DASEDLKKNAEIDVQNLTDKYIAKIDEVYAAKEVEIMKV 185 >gi|309791083|ref|ZP_07685618.1| ribosome recycling factor [Oscillochloris trichoides DG6] gi|308226867|gb|EFO80560.1| ribosome recycling factor [Oscillochloris trichoides DG6] Length = 185 Score = 214 bits (546), Expect = 4e-54, Method: Composition-based stats. Identities = 72/180 (40%), Positives = 115/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ + M LK + T+RTGR S M++ ++VEAYG+H+PLNQ+AN++V E R++ Sbjct: 6 LREYEASMRKATEALKHHLATIRTGRASSGMVEHLQVEAYGTHMPLNQLANISVPESRLI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +D M+ +E+ I S+L +NP +G+V+R+ VP+ TEERR +VK+ E+ K Sbjct: 66 VIQPFDNGMIKIIEKAIQNSDLSINPSNDGRVIRLAVPQLTEERRREMVKMVRHRVEEVK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ISVRN RRD +D LK+ + SED + + IQ++T+ T K++D EK+ E++ Sbjct: 126 ISVRNQRRDAIDDLKQLEEEKLISEDDLHRGQERIQQLTERTSKDLDQIGSEKEAEVLAV 185 >gi|227875940|ref|ZP_03994063.1| ribosome recycling factor [Mobiluncus mulieris ATCC 35243] gi|227843472|gb|EEJ53658.1| ribosome recycling factor [Mobiluncus mulieris ATCC 35243] Length = 185 Score = 214 bits (546), Expect = 4e-54, Method: Composition-based stats. Identities = 56/180 (31%), Positives = 98/180 (54%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ K +M + K + T+RTGR + +M D + VE YGS PL Q+A+ + E R + Sbjct: 6 LKDTKTKMQKAVEATKDEFATIRTGRANAAMFDGIVVEYYGSPTPLKQLASFNIPEARTV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D+ + I ES+LG+ P +G+ +R+ +P TE+RR VK A AE+ + Sbjct: 66 IIQPFDRNATQDIIHAISESDLGVTPTDDGKTIRVVLPALTEDRRKEYVKQAKTKAEEGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+R IRR D ++ +K ED V ++ +T +D+ E+K+ ++M Sbjct: 126 VSIRGIRRKAKDAMEALKKDKTLGEDEVERGVKELDTVTKKFTDEVDTLLEDKETDLMTV 185 >gi|298383473|ref|ZP_06993034.1| ribosome recycling factor [Bacteroides sp. 1_1_14] gi|298263077|gb|EFI05940.1| ribosome recycling factor [Bacteroides sp. 1_1_14] Length = 186 Score = 214 bits (546), Expect = 4e-54, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 111/180 (61%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L N +++M I +L++ + +R G+ S +LD ++V++YGS VP++ VA VT + R + Sbjct: 8 LDNAQEKMDMAIMYLEEALAHIRAGKASTRLLDGIRVDSYGSMVPISNVAAVTTPDARSI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK M +E+ I +S+LG+ P G+++RI +P TEERR L K + E +K Sbjct: 68 TIKPWDKSMFRVIEKAIIDSDLGIMPENNGEIIRIGIPPLTEERRKQLAKQCKSEGETAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +SVRN RRDG+D LKK+ K G +ED + E +QKI D IK I+ +K KEIM Sbjct: 128 VSVRNARRDGIDALKKAVKDG-LAEDEQKNAEAKLQKIHDKYIKQIEDMLADKDKEIMTV 186 >gi|19704944|ref|NP_602439.1| ribosome recycling factor (RRF) [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296329199|ref|ZP_06871700.1| ribosome recycling factor [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|22001936|sp|Q8R5Z9|RRF_FUSNN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|19712846|gb|AAL93738.1| Ribosome Recycling Factor (RRF) [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296153555|gb|EFG94372.1| ribosome recycling factor [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 190 Score = 214 bits (546), Expect = 4e-54, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 115/179 (64%), Gaps = 2/179 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +++M TI +K+ +R GR + SMLD +KVE YGS VPLNQ+ V+ E R+L Sbjct: 9 VKECEEKMVKTIEAVKEKFTAIRAGRANVSMLDGIKVENYGSEVPLNQIGTVSAPEARLL 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK +++ +E+ I +N+G+ P +G+V+R+ +PE T +RR VK+A AE K Sbjct: 69 VIDPWDKTLISKIEKAILAANIGMTPNNDGRVIRLVLPELTADRRKEYVKLAKNEAENGK 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGK--ASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 I++RNIR+D +HLKK K + SED + E ++Q +TD +K ID +K+KEI Sbjct: 129 IAIRNIRKDINNHLKKLEKDKENPISEDELKKEETNVQTLTDKYVKEIDDLLAKKEKEI 187 >gi|322437107|ref|YP_004219319.1| ribosome recycling factor [Acidobacterium sp. MP5ACTX9] gi|321164834|gb|ADW70539.1| ribosome recycling factor [Acidobacterium sp. MP5ACTX9] Length = 194 Score = 214 bits (546), Expect = 4e-54, Method: Composition-based stats. Identities = 69/190 (36%), Positives = 116/190 (61%), Gaps = 4/190 (2%) Query: 1 MNQVIDLQNI----KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVA 56 M ++ L+++ K R T+ + ++++ RTGR S MLD VKV+ YG+ P++QVA Sbjct: 5 MASIVALKDVHQQLKTRFEKTVDDFRANLLSARTGRASVHMLDQVKVDYYGTDTPISQVA 64 Query: 57 NVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVK 116 +T E ++++V W++ +V ++E+ I SN G NP+ +G+++R+P+P EERR VK Sbjct: 65 QITTPEAQLILVQPWEQTLVTAIEKAIRTSNQGFNPMHDGRIIRVPIPPMNEERRKEAVK 124 Query: 117 VAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFF 176 E K S+RNIRRDG + +KK+ K S D ++Q++TD+ IK ++ F Sbjct: 125 NLAGVLEGHKTSMRNIRRDGNELIKKAAKDKLISADDEKRANEEVQQLTDAEIKRLEDLF 184 Query: 177 EEKKKEIMHF 186 + K+KE+M Sbjct: 185 KAKEKELMTV 194 >gi|183221973|ref|YP_001839969.1| ribosome recycling factor [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189912041|ref|YP_001963596.1| ribosome recycling factor [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|190360250|sp|B0SDN4|RRF_LEPBA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238687812|sp|B0SM63|RRF_LEPBP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|167776717|gb|ABZ95018.1| Ribosome recycling factor [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780395|gb|ABZ98693.1| Ribosome recycling factor (Ribosome releasing factor; RRF) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 183 Score = 214 bits (546), Expect = 4e-54, Method: Composition-based stats. Identities = 72/177 (40%), Positives = 116/177 (65%), Gaps = 2/177 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +++++ +M T+ LKKD T+RTG+ +P M++ V+V+ YG+ PLNQ+ + EPR++ Sbjct: 6 IKSMQSKMDKTVDALKKDFGTIRTGKANPMMVEDVRVDYYGTLTPLNQLGKIACPEPRVI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ ++K M+ +E+ I ++LGL P +G +RI +PE T ERR L KV AE+ K Sbjct: 66 LITPFEKGMLKDIEKAIFAASLGLTPNNDGSSIRINIPELTGERRKELAKVVKQKAEEKK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +++RNIRRD D LKK + + S+D V ++ IQKITDS I + +EK+KEI Sbjct: 126 VAIRNIRRDANDELKKHQ--SEMSQDEVKGHQDKIQKITDSYIAKLGDLEKEKEKEI 180 >gi|307637928|gb|ADN80378.1| Ribosome recycling factor [Helicobacter pylori 908] gi|325996531|gb|ADZ51936.1| Ribosome recycling factor [Helicobacter pylori 2018] gi|325998120|gb|ADZ50328.1| Ribosome recycling factor [Helicobacter pylori 2017] Length = 185 Score = 214 bits (546), Expect = 5e-54, Method: Composition-based stats. Identities = 69/179 (38%), Positives = 108/179 (60%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 KD M ++ L +D TLR+ +VS ++LD +KV+ YG+ PLNQV +V L+ L Sbjct: 7 NETKDLMQKSVQALNRDFSTLRSAKVSVNILDHIKVDYYGTPTPLNQVGSVMSLDATTLQ 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S W+K ++ +ER I E+N+G+NP +G+ +++ P T E+R + K A A EK+K+ Sbjct: 67 ISPWEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTSEQRKLIAKDAKAMGEKAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIR+D + +KK K + SED + IQKITD I+ ID + K+ I+ Sbjct: 127 AVRNIRQDANNQVKKLEKDKEISEDESKKAQEQIQKITDEAIRKIDESVKNKEDAILKV 185 >gi|238898426|ref|YP_002924107.1| ribosome recycling factor [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259494545|sp|C4K5W6|RRF_HAMD5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|229466185|gb|ACQ67959.1| ribosome recycling factor [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 185 Score = 214 bits (546), Expect = 5e-54, Method: Composition-based stats. Identities = 67/178 (37%), Positives = 107/178 (60%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 + RM + + +RTGR SPS+LD ++VE YG+ PL Q+AN+ + L V Sbjct: 8 ETQSRMEKCTESFESQIKKIRTGRASPSILDSIQVEYYGASTPLRQLANIVAEDSSHLAV 67 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 +V+D+ + +E+ I S LGLNP ++R+P+P TE+RR L+KV + AE ++++ Sbjct: 68 TVFDRNLTPYIEKAIQNSPLGLNPSSAANLIRVPLPPLTEDRRKELIKVIRSEAEAARVA 127 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 VRNIR K++ K + SED +++++QK+TD IK ID F +K+KE+M Sbjct: 128 VRNIRASVNKKSKETLKKKEISEDEDRQIQDNVQKLTDRYIKKIDEFLTKKEKEVMTV 185 >gi|326803584|ref|YP_004321402.1| ribosome recycling factor [Aerococcus urinae ACS-120-V-Col10a] gi|326651583|gb|AEA01766.1| ribosome recycling factor [Aerococcus urinae ACS-120-V-Col10a] Length = 186 Score = 214 bits (546), Expect = 5e-54, Method: Composition-based stats. Identities = 64/179 (35%), Positives = 112/179 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 K+RM + L+ ++ +R G + S+L+ + VE YG PLNQ+A++T+ EPRML Sbjct: 7 FTETKNRMKKSEQSLQNELGKIRAGVANASLLNGIYVEYYGVDTPLNQIASITIPEPRML 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +D+ + +++R I S++G+ P +G+ +R+ +P T+ERR L K+ E +K Sbjct: 67 MVTPYDRSALDNIDRAIQMSDIGIAPTNDGEKIRLVIPALTQERRQELSKLVGRDLEDAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 I++RNIRRD D +KK+ K G+ +ED E ++QKITD + ++ +K+ EI++ Sbjct: 127 IAIRNIRRDANDTIKKAEKDGEITEDDARRNEKEVQKITDEVTERLEKIASDKEDEILN 185 >gi|77457331|ref|YP_346836.1| ribosome recycling factor [Pseudomonas fluorescens Pf0-1] gi|123605788|sp|Q3KHA9|RRF_PSEPF RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|77381334|gb|ABA72847.1| ribosome recycling factor [Pseudomonas fluorescens Pf0-1] Length = 185 Score = 214 bits (545), Expect = 5e-54, Method: Composition-based stats. Identities = 64/179 (35%), Positives = 101/179 (56%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ K+RM ++ L + +RTG+ PS+L+ V V YG+ P+ QVAN+TV + R L Sbjct: 7 KDAKERMTKSVESLAHNFGRIRTGQAHPSILEGVMVPYYGADTPIKQVANITVKDARTLQ 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +++ M+ +V++ I + L LNP G++L I +P TEE R K A AE +++ Sbjct: 67 VVAFERNMLGAVDKAIGSAGLNLNPTNLGELLLISMPALTEETRRGFTKQARDVAEDARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD LK K + SED +I +T + ID+ EK+K++M Sbjct: 127 AVRNIRRDANSSLKDLVKEKEISEDEERRAAGEIDDLTKKFVAEIDAKLAEKEKDLMAV 185 >gi|15644151|ref|NP_229200.1| ribosome recycling factor [Thermotoga maritima MSB8] gi|170289219|ref|YP_001739457.1| ribosome recycling factor [Thermotoga sp. RQ2] gi|6831653|sp|Q9X1B9|RRF_THEMA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238688857|sp|B1LBS6|RRF_THESQ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|6730315|pdb|1DD5|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome Recycling Factor, Rrf gi|50513689|pdb|1T1M|C Chain C, Binding Position Of Ribosome Recycling Factor (Rrf) On The E. Coli 70s Ribosome gi|4981962|gb|AAD36470.1|AE001792_10 ribosome recycling factor [Thermotoga maritima MSB8] gi|170176722|gb|ACB09774.1| ribosome recycling factor [Thermotoga sp. RQ2] Length = 185 Score = 214 bits (545), Expect = 5e-54, Method: Composition-based stats. Identities = 74/180 (41%), Positives = 120/180 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K++M T+ ++ ++ +RTG+ SP++L+ +KV+ YG P+NQ+A +++ E R L Sbjct: 6 IKEAKEKMKRTLEKIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISISEERTL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK +++ +E+ I+ S+LGLNPI +G V+R+ P T E+R VK A E+ K Sbjct: 66 VIKPWDKSVLSLIEKAINASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIVEEGK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIRR+ + +K+ +K G ED LEN+IQK+TD I+ +D FE KK+EIM F Sbjct: 126 IAIRNIRREILKKIKEDQKEGLIPEDDAKRLENEIQKLTDEFIEKLDEVFEIKKEEIMEF 185 >gi|153954045|ref|YP_001394810.1| ribosome recycling factor [Clostridium kluyveri DSM 555] gi|219854658|ref|YP_002471780.1| hypothetical protein CKR_1315 [Clostridium kluyveri NBRC 12016] gi|189044051|sp|A5N831|RRF_CLOK5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|254809504|sp|B9E1J1|RRF_CLOK1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|146346926|gb|EDK33462.1| Frr [Clostridium kluyveri DSM 555] gi|219568382|dbj|BAH06366.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 185 Score = 214 bits (545), Expect = 5e-54, Method: Composition-based stats. Identities = 71/180 (39%), Positives = 115/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++M T+ L K++ +++ GR +P++LD ++VE YG+ P++Q+A +++ E R+L Sbjct: 6 LNKADEKMNKTVDVLVKELASMKAGRANPAILDKIEVEYYGAMTPISQLAGISIPEARIL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK + S+E+ I +S+LG+NP +G+++R+ +PE TEE R +VK E SK Sbjct: 66 AIQPWDKSALKSIEKAILKSDLGINPSNDGEIIRLIIPELTEETRKNIVKNIKKTGEDSK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++R IRR+ D K +K SED + E IQK TD IKNID+ E+K+KEIM Sbjct: 126 VAIRGIRRECNDKFKALKKKNDISEDEIKKGEEQIQKKTDIFIKNIDAILEKKEKEIMSL 185 >gi|237724285|ref|ZP_04554766.1| ribosome-recycling factor [Bacteroides sp. D4] gi|229437473|gb|EEO47550.1| ribosome-recycling factor [Bacteroides dorei 5_1_36/D4] Length = 186 Score = 214 bits (545), Expect = 6e-54, Method: Composition-based stats. Identities = 66/180 (36%), Positives = 108/180 (60%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + + +++M + +L++ + +R G+ S +LD ++V++YGS VP++ VA VT + R + Sbjct: 8 INDAQEKMDMAVMYLEEALAHIRAGKASTRLLDGIRVDSYGSMVPISNVAAVTTPDARSI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK M +E+ I +S+LG+ P G+++R+ +P TEERR L K E +K Sbjct: 68 AIKPWDKSMFRIIEKAIMDSDLGITPENNGEIIRLGIPPLTEERRKQLAKQCKGEGETAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+RN RRD +D LKK+ K G ED + E +QK+ D I+ I+ EK KEIM Sbjct: 128 VSIRNARRDAIDTLKKAVKEG-MPEDEQKNAEAKLQKVHDKYIEKIEELLAEKDKEIMTV 186 >gi|320527474|ref|ZP_08028655.1| ribosome recycling factor [Solobacterium moorei F0204] gi|320132187|gb|EFW24736.1| ribosome recycling factor [Solobacterium moorei F0204] Length = 182 Score = 214 bits (545), Expect = 6e-54, Method: Composition-based stats. Identities = 67/174 (38%), Positives = 100/174 (57%), Gaps = 3/174 (1%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M I L+ ++ T+RTG + MLD V+V+ YGS PLNQ+A ++V E R LV+ +D Sbjct: 12 KMDKVIDHLQSELNTVRTGAANVKMLDRVEVDYYGSPTPLNQIAALSVSEGRTLVIKPYD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + ++E +E++LG+ P +G V+R+ VP+ T E R + K E+ KI +RNI Sbjct: 72 PSSLKAIEHACNEADLGIAPSNDGTVIRLTVPQLTGETRKEMTKKVDKMGEECKIQIRNI 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RRD M +K K ED+ EN+IQK+TD IK ID K E++ Sbjct: 132 RRDAMSVVK---KDKTMDEDIQKDCENEIQKLTDKYIKKIDDLAAAKSAEVLKV 182 >gi|57505745|ref|ZP_00371671.1| ribosome recycling factor [Campylobacter upsaliensis RM3195] gi|57016018|gb|EAL52806.1| ribosome recycling factor [Campylobacter upsaliensis RM3195] Length = 185 Score = 214 bits (545), Expect = 6e-54, Method: Composition-based stats. Identities = 65/186 (34%), Positives = 111/186 (59%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ + Q + ++ LKKD TLRTG+V+ +LD ++V+ YGS PLNQVA V Sbjct: 2 LNEIYEKQKTQA--EKSLEALKKDFTTLRTGKVNVHILDPIQVDYYGSATPLNQVATVLA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + + ++ W+K M+ ++E I +N+G+NP +G+ +++ P T+E+R VK A A Sbjct: 60 SDASTISITPWEKPMLKAIESAIAAANIGVNPNNDGESVKLFFPPMTKEQREENVKHAKA 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 EK+K+S+RN R+D D +KK K SED +++QK+TD ID ++K+ Sbjct: 120 MGEKAKVSIRNGRKDANDTIKKLEKDKAISEDEAKKAYDEVQKLTDLYTHKIDESVKDKE 179 Query: 181 KEIMHF 186 +++ Sbjct: 180 TQLLKV 185 >gi|225849796|ref|YP_002730030.1| ribosome recycling factor [Persephonella marina EX-H1] gi|225646194|gb|ACO04380.1| ribosome recycling factor [Persephonella marina EX-H1] Length = 184 Score = 214 bits (545), Expect = 6e-54, Method: Composition-based stats. Identities = 67/180 (37%), Positives = 115/180 (63%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ + RM + K+++ ++RTGR S +++ +KV+ YG+ +PL Q+A++T EP + Sbjct: 6 LKDAEKRMKKAVEKFKEELASIRTGRASVGLVENIKVDYYGAEMPLKQIASITTPEPSQI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WD+ V ++E+ + E+NLG NP EG ++R+ +P TEERR +VK+ AE+++ Sbjct: 66 LIQAWDQNAVPAIEKALQEANLGANPQTEGNLIRLILPPMTEERRREIVKMLGKMAEEAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIRRD + ++ +K G SED V +QKITD IK I+ K++EI+ Sbjct: 126 IAIRNIRRDDKERIEDLKKEG-FSEDEVKKALEQLQKITDKYIKQINDLATAKEEEILSI 184 >gi|81428873|ref|YP_395873.1| ribosome recycling factor (ribosome releasing factor) (RRF) [Lactobacillus sakei subsp. sakei 23K] gi|123564051|sp|Q38W67|RRF_LACSS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|78610515|emb|CAI55566.1| Ribosome recycling factor (ribosome releasing factor) (RRF) [Lactobacillus sakei subsp. sakei 23K] Length = 185 Score = 213 bits (544), Expect = 7e-54, Method: Composition-based stats. Identities = 65/179 (36%), Positives = 115/179 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ K+ M + L++ + +R GR + S+++ V VE YG+ PLNQ+A +T+ E R+L Sbjct: 6 LEQAKENMEKAEASLRRTLGQIRAGRANASLVNRVNVEYYGAMTPLNQIAAITIPEARVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK + +E+ ++ +++G++P +G V+R+ +P+ T ERR + K AE +K Sbjct: 66 LITPYDKGALEDIEKALYTADIGISPANDGSVIRLVIPQLTGERRKEIAKEVGKEAELAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 + VRN RRD MD+LKK+ K+ + SED + LE +Q +T+ K ID+ ++K+KEI Sbjct: 126 VVVRNARRDAMDNLKKAEKASEISEDEMHDLEEQVQNLTNEATKKIDAISKDKEKEITE 184 >gi|118474254|ref|YP_892896.1| ribosome recycling factor [Campylobacter fetus subsp. fetus 82-40] gi|166230773|sp|A0RRR3|RRF_CAMFF RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|118413480|gb|ABK81900.1| ribosome recycling factor [Campylobacter fetus subsp. fetus 82-40] Length = 185 Score = 213 bits (544), Expect = 8e-54, Method: Composition-based stats. Identities = 62/172 (36%), Positives = 101/172 (58%) Query: 15 GDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKE 74 + LK+D TLRTG+V+ +++D + V+ YGS LNQVA V + + +S W+K Sbjct: 14 DKALEVLKRDFTTLRTGKVNINIVDHINVDYYGSPTALNQVATVLATDASTISISPWEKT 73 Query: 75 MVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRR 134 M+ ++ I +N+G+NP +G +++ P T E R K A + EK+K+++RNIR+ Sbjct: 74 MLKAISSAIQAANIGVNPNNDGDSVKLFFPPMTTEDRQKNAKEARSMGEKAKVAIRNIRK 133 Query: 135 DGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 D D +KK K SED + +++QKITDS I ID ++K+ E++ Sbjct: 134 DANDDIKKIEKDKSVSEDEIKKGYDEVQKITDSYISKIDQLVKDKEAELLKV 185 >gi|323359725|ref|YP_004226121.1| ribosome recycling factor [Microbacterium testaceum StLB037] gi|323276096|dbj|BAJ76241.1| ribosome recycling factor [Microbacterium testaceum StLB037] Length = 184 Score = 213 bits (544), Expect = 8e-54, Method: Composition-based stats. Identities = 62/181 (34%), Positives = 100/181 (55%), Gaps = 3/181 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + RM + K+D T+RTGR +P M V V+ YGS PL Q+A++ E R L Sbjct: 6 LADAGARMDRAVEAAKEDFATVRTGRANPQMFQKVLVDYYGSPTPLAQLASLNNPEARTL 65 Query: 67 VVSVWDKEMVASVERGIHES-NLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 V++ +DK + ++E+ I + NLG+NP +G ++RI +PE TEERR VK+ E + Sbjct: 66 VINPYDKSALKAIEQAIRDMPNLGVNPTNDGNIVRITMPELTEERRKEYVKLVRGKGEDA 125 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 K+ +RN+RR D L + ED + E ++ +T + + ID + K+ E++ Sbjct: 126 KVQIRNLRRKAKDDLDALKSD--VGEDELVRAEKELDGVTRAHVDQIDEALKRKEAELLE 183 Query: 186 F 186 Sbjct: 184 V 184 >gi|317014647|gb|ADU82083.1| ribosome recycling factor [Helicobacter pylori Gambia94/24] Length = 185 Score = 213 bits (543), Expect = 9e-54, Method: Composition-based stats. Identities = 69/179 (38%), Positives = 108/179 (60%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 KD M ++ L +D TLR+ +VS +++D +KV+ YG+ PLNQV +V L+ L Sbjct: 7 NETKDLMQKSVQALNRDFSTLRSAKVSVNIVDHIKVDYYGTPTPLNQVGSVMSLDATTLQ 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S W+K ++ +ER I E+N+G+NP +G+ +++ P T E+R + K A A EK+K+ Sbjct: 67 ISPWEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTTEQRKLIAKDAKAMGEKAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIR+D + +KK K + SED + IQKITD IK ID + K+ I+ Sbjct: 127 AVRNIRQDANNQVKKLEKDKEISEDESKKAQEQIQKITDEAIKKIDESVKNKEDAILKV 185 >gi|154149092|ref|YP_001405963.1| ribosome recycling factor [Campylobacter hominis ATCC BAA-381] gi|166230774|sp|A7I0C2|RRF_CAMHC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|153805101|gb|ABS52108.1| ribosome recycling factor [Campylobacter hominis ATCC BAA-381] Length = 185 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 69/186 (37%), Positives = 109/186 (58%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N V D Q K ++ LK+D TLRTG+VS +L+ + V+ Y + PLNQVA V Sbjct: 2 LNSVYDAQ--KSDCNKALNALKRDFSTLRTGKVSVKILENIFVDYYDNQTPLNQVATVLA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + + V+ W+K M+ +E I +N+G+NP +G+ +++ P T E+R K A A Sbjct: 60 TDATTISVTPWEKSMLKGIESAIAAANIGVNPTNDGESVKLFFPPMTTEQRKENAKKAKA 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 EK+K+S+RNIR+D D +KK K SED +++QKITD+ I+ ID + K+ Sbjct: 120 MGEKAKVSIRNIRKDANDGVKKLEKDKSISEDEAKKAYDEVQKITDNFIEKIDEAVKNKE 179 Query: 181 KEIMHF 186 +E++ Sbjct: 180 EELLKV 185 >gi|162454452|ref|YP_001616819.1| hypothetical protein sce6172 [Sorangium cellulosum 'So ce 56'] gi|189044078|sp|A9GGK7|RRF_SORC5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|161165034|emb|CAN96339.1| rrf [Sorangium cellulosum 'So ce 56'] Length = 185 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 60/180 (33%), Positives = 105/180 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +++ + I L++D+ +RTGR + +MLD ++V+ YG P+ Q+A V+V EPR++ Sbjct: 6 IKELREGIEKAIEALRRDLAKVRTGRANAAMLDGIRVDYYGVPTPIVQMATVSVPEPRLI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V W+K V ++E+ I ES+LGLNP V+ ++R+P+P TEERR +VK+ E K Sbjct: 66 SVKPWEKNQVKAIEKAIRESDLGLNPQVDADLIRLPIPPLTEERRREMVKLTKKNGEDCK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++R RRD + + K G S D + + + K +D+ K+K+I+ Sbjct: 126 VAIRKHRRDANEMIDSLEKDGDVSGDEADRAKKKVDDVVAEGTKLVDTVIAGKEKDILDV 185 >gi|325853886|ref|ZP_08171402.1| ribosome recycling factor [Prevotella denticola CRIS 18C-A] gi|327313933|ref|YP_004329370.1| ribosome recycling factor [Prevotella denticola F0289] gi|325484223|gb|EGC87153.1| ribosome recycling factor [Prevotella denticola CRIS 18C-A] gi|326945432|gb|AEA21317.1| ribosome recycling factor [Prevotella denticola F0289] Length = 186 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 115/180 (63%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +RM +L ++ +R GR + ++LD V+V++YGS VPLNQVA V V + R + Sbjct: 8 LNDAGERMEMAAMYLGDELQRIRAGRANVAILDGVRVDSYGSKVPLNQVATVMVPDARTI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WD++ + +E+ I +S++G+ P G+++R+ +P+ TEERR LVK + E++K Sbjct: 68 AIKPWDRKAIKDIEKAIMDSDVGITPENNGEMIRLNLPQPTEERRRELVKQCNKIGERTK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 + +RN+R D D LKK+ K G SED END+QK+ D IK +D+ EEK+KEIM Sbjct: 128 VEIRNVRSDIKDKLKKAIKDG-LSEDNEKDAENDLQKLHDKYIKQVDALLEEKQKEIMTV 186 >gi|196234716|ref|ZP_03133527.1| ribosome recycling factor [Chthoniobacter flavus Ellin428] gi|196221224|gb|EDY15783.1| ribosome recycling factor [Chthoniobacter flavus Ellin428] Length = 186 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 72/186 (38%), Positives = 117/186 (62%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ L + M +++ + +RTG+ SP++++ + VEAYGS + L Q+A +T Sbjct: 1 MDPDETLLETEASMEKGFEYMQHEFAAVRTGKASPALVENIDVEAYGSQMKLKQLALITT 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPR+LV+ +D +ER I ES +G+NP V+G+++R+P+P +EERR LVK Sbjct: 61 PEPRLLVIQPFDGSTTKDIERAIKESKIGINPAVDGKIIRLPIPALSEERRKDLVKGIKQ 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE++++ +R+ RRDG+D LKK++K GK +ED + S E +IQK+TD K ID K+ Sbjct: 121 MAEEARVRIRSARRDGIDGLKKAQKDGKITEDDLESYEKEIQKLTDGFTKKIDDAVNAKE 180 Query: 181 KEIMHF 186 +I+ Sbjct: 181 ADILKV 186 >gi|160915170|ref|ZP_02077383.1| hypothetical protein EUBDOL_01178 [Eubacterium dolichum DSM 3991] gi|158432969|gb|EDP11258.1| hypothetical protein EUBDOL_01178 [Eubacterium dolichum DSM 3991] Length = 180 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 66/180 (36%), Positives = 110/180 (61%), Gaps = 3/180 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q + +M + L++++ T+RTG + ++L+ V E YGS +P+NQ+A + V+E R L Sbjct: 4 MQTAEHKMQSAVEVLEQELKTIRTGMANAAILEHVTFEYYGSPMPINQMAGIKVVEGRQL 63 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK + +ER I S++GL P +G +R+ VP TEERR VK A E +K Sbjct: 64 MITPYDKGTLKDIERAIAMSDIGLVPQNDGDCIRLNVPALTEERRKEFVKDASKMGENAK 123 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RN+RRD D +K K + +ED L++ IQK+TD +K ++ + K KEI+ Sbjct: 124 IAIRNVRRDANDTIK---KDKELTEDESKDLQDKIQKLTDKFVKLVEQAVDAKSKEILKV 180 >gi|315637821|ref|ZP_07893011.1| ribosome recycling factor [Campylobacter upsaliensis JV21] gi|315482062|gb|EFU72676.1| ribosome recycling factor [Campylobacter upsaliensis JV21] Length = 185 Score = 212 bits (542), Expect = 1e-53, Method: Composition-based stats. Identities = 65/186 (34%), Positives = 111/186 (59%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ + Q + ++ LKKD TLRTG+V+ +LD ++V+ YGS PLNQVA V Sbjct: 2 LNEIYEKQKAQA--EKSLEALKKDFTTLRTGKVNVHILDPIQVDYYGSATPLNQVATVLA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + + ++ W+K M+ ++E I +N+G+NP +G+ +++ P T+E+R VK A A Sbjct: 60 SDASTISITPWEKLMLKAIESAIAAANIGVNPNNDGESVKLFFPPMTKEQREENVKHAKA 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 EK+K+S+RN R+D D +KK K SED +++QK+TD ID ++K+ Sbjct: 120 MGEKAKVSIRNGRKDANDTIKKLEKDKAISEDEAKKAYDEVQKLTDLYTHKIDESVKDKE 179 Query: 181 KEIMHF 186 +++ Sbjct: 180 TQLLKV 185 >gi|149921516|ref|ZP_01909967.1| ribosome recycling factor [Plesiocystis pacifica SIR-1] gi|149817591|gb|EDM77059.1| ribosome recycling factor [Plesiocystis pacifica SIR-1] Length = 185 Score = 212 bits (542), Expect = 1e-53, Method: Composition-based stats. Identities = 72/178 (40%), Positives = 114/178 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ +D M L +++ +R GR +P++LD V+VEAYG + L +VA V+ + R+L Sbjct: 6 LELAEDAMKSAQERLARELSRVRAGRANPALLDGVRVEAYGVQMSLREVATVSTADARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V +D ++SVE+ I S LGLNP +G VLR+P+P TEERR +LVK AE++K Sbjct: 66 IVKPFDANTISSVEKAIMNSGLGLNPSSDGVVLRVPIPPLTEERRRSLVKQVKDQAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 I++R+ RR+G D LK + K + SED + + +Q++T+ + IDS ++K+ EIM Sbjct: 126 IAIRSGRREGNDLLKGAEKDKEISEDELKRGLDKVQELTNRYVAMIDSAVKKKESEIM 183 >gi|187251116|ref|YP_001875598.1| ribosome recycling factor [Elusimicrobium minutum Pei191] gi|186971276|gb|ACC98261.1| Ribosome recycling factor [Elusimicrobium minutum Pei191] Length = 187 Score = 212 bits (542), Expect = 1e-53, Method: Composition-based stats. Identities = 70/180 (38%), Positives = 116/180 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + K M D + LK+D+ T+RTGR S +++ ++V+ YG+ PL Q+A + V + R L Sbjct: 8 ISKSKTGMNDHVERLKRDLGTIRTGRASTQLIENIRVDYYGTPTPLKQMAMINVTDARTL 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +S WD + +++ + +++LG +P+ +G+++RI +P TE+RR LVK +E K Sbjct: 68 EISPWDISALNEIDKTLQKADLGASPVNDGKIIRIVLPNMTEDRRKMLVKNVSKMSEDFK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN RRD ++ LKK++K+G+ +ED + E DIQK TDST+ ID +K+KEIM Sbjct: 128 VAVRNERRDVLEKLKKAQKAGEITEDDLKRYEGDIQKATDSTVALIDKTISDKEKEIMTI 187 >gi|282878181|ref|ZP_06286977.1| ribosome recycling factor [Prevotella buccalis ATCC 35310] gi|281299599|gb|EFA91972.1| ribosome recycling factor [Prevotella buccalis ATCC 35310] Length = 186 Score = 212 bits (542), Expect = 1e-53, Method: Composition-based stats. Identities = 78/180 (43%), Positives = 117/180 (65%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 LQ ++RM +FL++ + +R GR + ++LD V V +YGS VPLNQVANV+V + R + Sbjct: 8 LQGAEERMQMATTFLEEQLNRIRAGRANVAILDGVMVSSYGSMVPLNQVANVSVPDARTI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WD++ + +E+ I +S++G+ P G+++R+ +P+ TEERR LVK + EKSK Sbjct: 68 AIKPWDRKAIRDIEKAIMDSDVGITPENNGEIIRLGIPQPTEERRRDLVKQCNKIGEKSK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I VRN+R + D LKK+ K G SED EN++QKI D IK +D+ E+K KEIM Sbjct: 128 IEVRNVRSEIKDKLKKAIKDG-LSEDAGKDAENELQKIHDKFIKQVDNLLEDKTKEIMTV 186 >gi|317011456|gb|ADU85203.1| ribosome recycling factor [Helicobacter pylori SouthAfrica7] Length = 185 Score = 212 bits (542), Expect = 1e-53, Method: Composition-based stats. Identities = 69/179 (38%), Positives = 108/179 (60%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 KD M +I L ++ TLR+ +VS ++LD +KV+ YG+ LNQV +V L+ L Sbjct: 7 NETKDLMQKSIQALSREFSTLRSAKVSVNILDHIKVDYYGTPTALNQVGSVMSLDATTLQ 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S W+K ++ +ER I E+N+G+NP +G+ +++ P T E+R + K A A EK+K+ Sbjct: 67 ISPWEKNLLKEIERAIQEANIGVNPNNDGETIKLFFPPMTTEQRKLIAKDAKAMGEKAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIR+D + +KK K + SED ++ IQKITD IK ID + K+ I+ Sbjct: 127 AVRNIRQDANNKVKKLEKDKEISEDESKKAQDQIQKITDEAIKKIDESVKNKEDAILKV 185 >gi|325298509|ref|YP_004258426.1| Ribosome-recycling factor [Bacteroides salanitronis DSM 18170] gi|324318062|gb|ADY35953.1| Ribosome-recycling factor [Bacteroides salanitronis DSM 18170] Length = 186 Score = 212 bits (542), Expect = 1e-53, Method: Composition-based stats. Identities = 71/180 (39%), Positives = 104/180 (57%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++M I +L+ + +R G+ +LD ++V++YGS VP+N VA VT + R + Sbjct: 8 LSSAEEKMDMAIMYLEDALAHIRAGKADVRLLDGIRVDSYGSMVPINNVAAVTTPDARSI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK M +E+ I +S+LG+ P G+++RI +P TEERR L K E +K Sbjct: 68 AIKPWDKSMFRIIEKAIIDSDLGIMPENNGEIIRIGIPPLTEERRKQLAKQCKGEGETAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +SVRN RRD +D LKK+ K G ED + E +QK D IK ID K KEIM Sbjct: 128 VSVRNARRDAIDALKKAVKDG-MPEDEQKNSEAKLQKTHDKYIKQIDDLLAAKDKEIMTV 186 >gi|193212052|ref|YP_001998005.1| ribosome recycling factor [Chlorobaculum parvum NCIB 8327] gi|238692606|sp|B3QL17|RRF_CHLP8 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|193085529|gb|ACF10805.1| ribosome recycling factor [Chlorobaculum parvum NCIB 8327] Length = 186 Score = 212 bits (542), Expect = 1e-53, Method: Composition-based stats. Identities = 79/180 (43%), Positives = 108/180 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q I+ RM TI + ++ ++RTG+ + ++LD VKVEAYGS +PL QV NV VL+ L Sbjct: 7 IQKIEPRMKKTIEAFQHEIASIRTGKATTALLDRVKVEAYGSQMPLKQVGNVGVLDVHTL 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V VWDK MV +VER I ++NLGLNP +GQ +RI +P TEERR VK+ + E SK Sbjct: 67 SVQVWDKSMVGAVERAIRDANLGLNPSADGQTVRISIPPLTEERRKEYVKLTKKFGEDSK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+RN RRD + L K K SED + + + K I +K+KEIM Sbjct: 127 VSLRNHRRDLIHELDKLEKEKAISEDDKNHGKKEADDLVHKYEKKITEMIAQKEKEIMEV 186 >gi|218129178|ref|ZP_03457982.1| hypothetical protein BACEGG_00753 [Bacteroides eggerthii DSM 20697] gi|217988556|gb|EEC54876.1| hypothetical protein BACEGG_00753 [Bacteroides eggerthii DSM 20697] Length = 212 Score = 212 bits (542), Expect = 1e-53, Method: Composition-based stats. Identities = 75/187 (40%), Positives = 109/187 (58%), Gaps = 2/187 (1%) Query: 1 MNQVID-LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVT 59 M V D L +++M + +L++ + +R G+ +LD ++V++YGS VP+N VA VT Sbjct: 27 MKDVKDILDEAQEKMDMAVMYLEESLAHIRAGKADVRLLDGIRVDSYGSMVPINNVAAVT 86 Query: 60 VLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 + R + + WDK M +E+ I +S+LG+ P G+++RI +P TEERR L K Sbjct: 87 TPDARSIAIKPWDKSMFRVIEKAIIDSDLGIMPENNGEIIRIGIPPLTEERRKQLAKQCK 146 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 +E +K+SVRN RRD +D LKKS K G +ED E +QKI D IK ID K Sbjct: 147 NESETAKVSVRNARRDAIDALKKSVKEG-LAEDAQKGGEEKLQKIHDKYIKQIDDMLAAK 205 Query: 180 KKEIMHF 186 KEIM Sbjct: 206 DKEIMTV 212 >gi|333029799|ref|ZP_08457860.1| Ribosome-recycling factor [Bacteroides coprosuis DSM 18011] gi|332740396|gb|EGJ70878.1| Ribosome-recycling factor [Bacteroides coprosuis DSM 18011] Length = 185 Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 111/180 (61%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + + M I +L++ + +R G+ +P +LD ++V++YGS +P+N VA VT + R + Sbjct: 7 INEATENMELAIDYLEESLSHIRAGKANPKLLDGIRVDSYGSLMPINNVAAVTTPDARSI 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WDK M + +E+ I +S+LG+ P G+V+RI +P TEERR+ L K E +K Sbjct: 67 LIKPWDKSMFSVIEKAIIDSDLGIMPENNGEVIRIGIPPLTEERRIQLTKQCRGEGETAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ISVRN RRDG+D+LKK+ K G ED S E +QK+ D IK I+ EK +EIM Sbjct: 127 ISVRNARRDGIDYLKKAVKEG-LPEDAQKSGEEKLQKLHDKFIKKIEELLNEKDQEIMTV 185 >gi|299141583|ref|ZP_07034719.1| ribosome recycling factor [Prevotella oris C735] gi|298576919|gb|EFI48789.1| ribosome recycling factor [Prevotella oris C735] Length = 186 Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 75/180 (41%), Positives = 115/180 (63%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + ++RM +L ++ +R GR + ++LD VKV++YGS VPLNQVA V+ + R + Sbjct: 8 LSDAQERMEMAAMYLADELTHIRAGRANTAILDGVKVDSYGSKVPLNQVATVSTPDARTI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK+ + +E+ I +S++G+ P G+V+R+ +P+ TEERR LVK + E++K Sbjct: 68 AIRPWDKKAIKDIEKAIMDSDVGITPENNGEVIRLGIPQPTEERRKELVKQCNKIGERTK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 + VRN+R + D LKK+ K G SED+ END+QK+ D IK ID EK+KEIM Sbjct: 128 VEVRNVRGEVKDKLKKAIKDG-LSEDLEKDAENDLQKVHDKFIKKIDELLTEKQKEIMTV 186 >gi|325478712|gb|EGC81823.1| ribosome recycling factor [Anaerococcus prevotii ACS-065-V-Col13] Length = 186 Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 69/179 (38%), Positives = 111/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + +D M + + + T++ GR + ++LD + YG+ P+NQ A V+V E R+L+ Sbjct: 8 KQAQDEMAKAVDSFENRIATIKAGRATEAVLDGITFSYYGTETPINQAATVSVPEARLLM 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + WDK + +E+ I +SN+G+ P +G+V+R+P P+ TEERR K YAE +KI Sbjct: 68 IKPWDKSNIGPIEKAILKSNIGITPQNDGEVIRLPFPQLTEERRKEYTKQVDTYAEDAKI 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +RN RR+ MD +KKS KSG +ED +LE++IQKI D I+ +++ +K KE+M Sbjct: 128 VIRNKRREAMDEVKKSEKSGDVTEDDRYTLEDEIQKIADKNIEEVEALANKKNKELMSV 186 >gi|296123507|ref|YP_003631285.1| ribosome recycling factor [Planctomyces limnophilus DSM 3776] gi|296015847|gb|ADG69086.1| ribosome recycling factor [Planctomyces limnophilus DSM 3776] Length = 186 Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats. Identities = 60/185 (32%), Positives = 110/185 (59%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ L + ++RM L+ ++ LRTGR + S++D ++VE YGS P+ Q+A V+V Sbjct: 1 MDPDEILFDAEERMDKAAQVLQDQLVGLRTGRANASLVDSIRVEYYGSPTPIKQLATVSV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EP+ +++ +D+ +++ + + I S++GL P +G+V+R+ VP + ERR +V Sbjct: 61 PEPQQIMIKPFDQSILSEIGKAIQASDVGLAPNNDGRVIRLNVPPLSTERRKQIVARVKE 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE +++++RNIRRD H + K SED+ S + +Q++T +++ E K+ Sbjct: 121 MAEDARVAIRNIRRDANKHADTALKDKLMSEDIHESTKESVQELTKKYEGKVNTVAEAKE 180 Query: 181 KEIMH 185 KE+M Sbjct: 181 KEVME 185 >gi|110004372|emb|CAK98710.1| ribosome recycling factor protein [Spiroplasma citri] Length = 182 Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats. Identities = 66/186 (35%), Positives = 111/186 (59%), Gaps = 4/186 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+Q + + K++M I + +++ +RTGR +P+ML + ++ YG+ P+ Q+AN+ V Sbjct: 1 MSQEV-INQTKEKMEKVIVSFENELIKIRTGRANPNMLSHIMIDYYGTLTPIQQLANIMV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R LV+ +D+ ++ + I++++LGL P E ++R+ +P TEERR LVK Sbjct: 60 PEARQLVIKPYDRSIINLILTAINKADLGLTPSSEADLIRLNIPPLTEERRKMLVKEMWK 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 +E+ K+++RN RRD +HLK K +ED E ++QK+TD IK ID K+ Sbjct: 120 ASEQFKVAIRNERRDSNEHLK---KDSDLTEDDKKYYEGEVQKLTDQFIKKIDEKATLKE 176 Query: 181 KEIMHF 186 KE+M Sbjct: 177 KELMEV 182 >gi|89889410|ref|ZP_01200921.1| ribosome recycling factor [Flavobacteria bacterium BBFL7] gi|89517683|gb|EAS20339.1| ribosome recycling factor [Flavobacteria bacterium BBFL7] Length = 184 Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats. Identities = 77/188 (40%), Positives = 114/188 (60%), Gaps = 6/188 (3%) Query: 1 MNQVIDL--QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 MN+ ++L K+ M I L+K ++ +R G+ SP+ML V V+ YGS PL QVANV Sbjct: 1 MNEELELVIDACKEGMDSAIVHLEKQLLNIRAGKASPAMLGSVFVDYYGSQTPLGQVANV 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 + R + V+ W+K M+ +E+GI +NLGLNP+ G+ + I VP TEERR+ L K + Sbjct: 61 AAPDARTITVTPWEKGMITEIEKGIMYANLGLNPMNNGESVIINVPALTEERRIDLAKQS 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 + E++KI VRN R+ M+ LKK SED++ S E ++Q++T+S I ID Sbjct: 121 KSEGEEAKIGVRNDRKTAMNDLKKL----GLSEDLLKSSEEEVQELTNSYIAKIDKIVAV 176 Query: 179 KKKEIMHF 186 K+ EIM Sbjct: 177 KEAEIMKV 184 >gi|223985634|ref|ZP_03635684.1| hypothetical protein HOLDEFILI_02990 [Holdemania filiformis DSM 12042] gi|223962401|gb|EEF66863.1| hypothetical protein HOLDEFILI_02990 [Holdemania filiformis DSM 12042] Length = 182 Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats. Identities = 74/186 (39%), Positives = 110/186 (59%), Gaps = 5/186 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M +++D N + +M I + + T+RTGR + ML V+ + YG P+NQ++++TV Sbjct: 2 MKEILD--NSRSKMQKAIDTFSEHLETIRTGRANAGMLAGVEADYYGCPTPINQISSITV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 +E R LVV +D + ++E I++S+LGLNP +G V+RI VP TEE R L K Sbjct: 60 VEGRQLVVKPYDSSSLKAIEHAINKSDLGLNPQNDGSVIRINVPALTEETRKELCKKVSK 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 +E++KI+VRN+RRD + K K +ED IQK+TD IK +DS EK+ Sbjct: 120 LSEEAKIAVRNLRRDANEIAK---KDDTLTEDAEKECLEKIQKLTDEMIKKVDSVAAEKE 176 Query: 181 KEIMHF 186 KEIM Sbjct: 177 KEIMTV 182 >gi|88802057|ref|ZP_01117585.1| ribosome releasing factor [Polaribacter irgensii 23-P] gi|88782715|gb|EAR13892.1| ribosome releasing factor [Polaribacter irgensii 23-P] Length = 184 Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats. Identities = 74/188 (39%), Positives = 116/188 (61%), Gaps = 6/188 (3%) Query: 1 MNQVID--LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 M++ ++ + K+ MGD I+ L+K++ +R G+ +P+ML V V+ YGS PL+QVANV Sbjct: 1 MSEEVEFIIDTTKEAMGDAIAHLEKELRAIRAGKATPAMLANVMVDYYGSQTPLSQVANV 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 +PR + + W+K M+ +E+ I +NLG NP+ G ++ I VP TEERR+ L K A Sbjct: 61 NTPDPRTIAIQPWEKSMLQPIEKAIMAANLGFNPMNNGDIIMINVPPLTEERRIGLAKQA 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 A AE +K+ +RN R+D + +KK+ S+D+ E DIQ +TDS +K I+ Sbjct: 121 KAEAEHAKVGIRNARKDANNDIKKT----DISDDLKKDSELDIQNLTDSFVKVIEEKLAV 176 Query: 179 KKKEIMHF 186 K++EIM Sbjct: 177 KEREIMTV 184 >gi|288800846|ref|ZP_06406303.1| ribosome recycling factor [Prevotella sp. oral taxon 299 str. F0039] gi|288332307|gb|EFC70788.1| ribosome recycling factor [Prevotella sp. oral taxon 299 str. F0039] Length = 186 Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats. Identities = 76/180 (42%), Positives = 114/180 (63%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +RM +L++ + +R GR + ++LD V+V +YGS VPLNQVANV+ +PR + Sbjct: 8 LTDAGERMEMAALYLEEQLSRIRAGRANIAILDGVRVSSYGSMVPLNQVANVSAPDPRTI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ WDK+ + +E+ I +S++G+ P G+V+R+ +P+ TEERR L K + EK K Sbjct: 68 AIAPWDKKTIRDIEKAIMDSDVGITPENNGEVIRLNIPQPTEERRRELAKQCNKIGEKIK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I VRN+R D D LKK+ K G SED EN++QKI D IK ++ EK+KEIM Sbjct: 128 IEVRNVRSDIKDKLKKAIKDG-LSEDNEKDAENELQKIHDKYIKRVEDLLAEKEKEIMTV 186 >gi|312131765|ref|YP_003999105.1| ribosome recycling factor [Leadbetterella byssophila DSM 17132] gi|311908311|gb|ADQ18752.1| ribosome recycling factor [Leadbetterella byssophila DSM 17132] Length = 186 Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats. Identities = 68/187 (36%), Positives = 111/187 (59%), Gaps = 2/187 (1%) Query: 1 MNQV-IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVT 59 M ++ + L ++ M I + ++ +R GR S +MLD V VE YG PL+QV++VT Sbjct: 1 MEEIDLILDLTQESMEKVIKHTQIELSKIRAGRASTNMLDGVLVEYYGVMSPLSQVSSVT 60 Query: 60 VLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 + R + + ++K++++ +ER I SN+GLNP +G+ +R+ VP TEERR LVK Sbjct: 61 TPDARTIQIKPFEKKIISDIERAIINSNIGLNPANDGETIRLNVPPLTEERRRELVKRVK 120 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 A E +K+ +R +R++ D LKK + G SED + S E +QK+T+ I+ +D K Sbjct: 121 AEIEVAKVGIRKVRQEMNDDLKKLKNDG-VSEDAIKSGEEKVQKLTNQYIEKVDQLLAAK 179 Query: 180 KKEIMHF 186 + +IM Sbjct: 180 EADIMQV 186 >gi|226227179|ref|YP_002761285.1| ribosome recycling factor [Gemmatimonas aurantiaca T-27] gi|226090370|dbj|BAH38815.1| ribosome recycling factor [Gemmatimonas aurantiaca T-27] Length = 184 Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats. Identities = 80/180 (44%), Positives = 113/180 (62%), Gaps = 3/180 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ K M I KK+ ++R+G+ SP+MLD +KVEAYGS VPLNQVA++ EPR+L Sbjct: 8 LKDAKSGMEKAIENSKKEFSSVRSGKASPNMLDTIKVEAYGSFVPLNQVASIAAPEPRIL 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK +E+ I ES LGL+P +G V+R+P+P E+RR LVKV H AE + Sbjct: 68 LVTPFDKGQAKVIEKAIRESELGLDPAHQGGVIRVPLPSMNEQRRKELVKVLHKMAEDGR 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I+VR+ R DG D LKK SED E D+QK+ D I +D+ + K+ E+M Sbjct: 128 IAVRHARTDGRDKLKKL---DGVSEDDKKHTEKDLQKVHDDFIGKLDALVKAKEAELMEV 184 >gi|189502668|ref|YP_001958385.1| hypothetical protein Aasi_1351 [Candidatus Amoebophilus asiaticus 5a2] gi|238692316|sp|B3ETV4|RRF_AMOA5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|189498109|gb|ACE06656.1| hypothetical protein Aasi_1351 [Candidatus Amoebophilus asiaticus 5a2] Length = 186 Score = 211 bits (539), Expect = 3e-53, Method: Composition-based stats. Identities = 74/187 (39%), Positives = 106/187 (56%), Gaps = 2/187 (1%) Query: 1 MNQVID-LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVT 59 M+++ L M + + + +R GR P MLD + + Y + PLNQVA +T Sbjct: 1 MDEIQKQLDKSDQLMQKACTHTQIEFSKIRAGRAMPDMLDGISILYYNAMTPLNQVAAIT 60 Query: 60 VLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 + R LV+ W+++ + +E+ I S LGLNP +G+V+RI VP TEERR LVK A Sbjct: 61 TPDARTLVIKPWERKCIQEIEKAIVNSKLGLNPQNDGEVVRIIVPPLTEERRKDLVKQAK 120 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 AEK KIS+RNIR+D + K +K G ASED + E +Q +TD I NID+ K Sbjct: 121 NEAEKGKISIRNIRKDIKETFKHLQKDG-ASEDTIKRAEEKLQNLTDKHIHNIDNLLTHK 179 Query: 180 KKEIMHF 186 + EI+ Sbjct: 180 EAEILEV 186 >gi|32472787|ref|NP_865781.1| ribosome recycling factor [Rhodopirellula baltica SH 1] gi|32444024|emb|CAD73466.1| Ribosome recycling factor [Rhodopirellula baltica SH 1] Length = 200 Score = 211 bits (539), Expect = 3e-53, Method: Composition-based stats. Identities = 57/179 (31%), Positives = 106/179 (59%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + ++RM +S L+ ++ +RTGR +P ++D +KVE YGS PL Q+A++ EP+ + Sbjct: 21 LMDAEERMDKAVSVLQNNLSGIRTGRANPGLVDSIKVEVYGSLTPLKQLASIGTPEPQQI 80 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D + +E+ I +LGLNP +G+V+R+ VP + E R +V AE++K Sbjct: 81 LIRPYDATTIKDIEKAIVAGDLGLNPQNDGRVIRLNVPPLSGEVRKKMVSRIKELAEEAK 140 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +S+RNIRRD + + K + +ED ++ +Q++T N++ + ++ E+M Sbjct: 141 VSIRNIRRDANKAAETAEKDKEMTEDDRDKTKDQVQELTKKAETNVNESAKAREAEVME 199 >gi|189468227|ref|ZP_03017012.1| hypothetical protein BACINT_04623 [Bacteroides intestinalis DSM 17393] gi|189436491|gb|EDV05476.1| hypothetical protein BACINT_04623 [Bacteroides intestinalis DSM 17393] Length = 209 Score = 211 bits (539), Expect = 3e-53, Method: Composition-based stats. Identities = 74/187 (39%), Positives = 107/187 (57%), Gaps = 2/187 (1%) Query: 1 MNQVID-LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVT 59 M V D L +++M + +L++ + +R G+ +LD ++V++YGS VP+N VA V Sbjct: 24 MRDVKDILDEAQEKMDMAVMYLEEALAHIRAGKADVRLLDGIRVDSYGSMVPINNVAAVN 83 Query: 60 VLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 + R + + WDK M +E+ I +S+LG+ P G+++RI +P TEERR L K Sbjct: 84 TPDARSIAIKPWDKSMFRVIEKAIIDSSLGIMPENNGEIIRIGIPPLTEERRRQLAKQCK 143 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 E +K+SVRN RRD +D LKKS K G +ED E +QKI D IK ID K Sbjct: 144 GEGETAKVSVRNARRDAIDALKKSVKDG-LAEDAQKGGEEKLQKIHDKYIKQIDDMLIAK 202 Query: 180 KKEIMHF 186 KEIM Sbjct: 203 DKEIMTV 209 >gi|139439763|ref|ZP_01773154.1| Hypothetical protein COLAER_02185 [Collinsella aerofaciens ATCC 25986] gi|133774913|gb|EBA38733.1| Hypothetical protein COLAER_02185 [Collinsella aerofaciens ATCC 25986] Length = 178 Score = 211 bits (539), Expect = 3e-53, Method: Composition-based stats. Identities = 65/179 (36%), Positives = 104/179 (58%), Gaps = 3/179 (1%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +NI M ++ LK + +RTGR + ++L + V+ YG P+ QVA V E ML+ Sbjct: 3 ENITAHMDKSLESLKHNFSKVRTGRANANILSDITVDYYGVPTPVTQVAAVKTPEAHMLL 62 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + WDK ++ ++ + I S+LG+ P +G V+R+P P TEERR LVK YAE++K+ Sbjct: 63 IEPWDKALINAIVKAIGASDLGITPNSDGTVVRLPFPAPTEERRRELVKECREYAEQAKV 122 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RNIRRD + K + + +ED V + +QK TD + ++ +EK+ E+M Sbjct: 123 SIRNIRRDFNN---KLERDEELTEDDVRREQAKVQKHTDEYVAKVEELLKEKEAEVMEI 178 >gi|42525110|ref|NP_970490.1| hypothetical protein Bd3784 [Bdellovibrio bacteriovorus HD100] gi|47116990|sp|P61302|RRF_BDEBA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|39577321|emb|CAE81144.1| rrf [Bdellovibrio bacteriovorus HD100] Length = 186 Score = 211 bits (539), Expect = 3e-53, Method: Composition-based stats. Identities = 68/179 (37%), Positives = 113/179 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N + +M T++ L +++ +RTGR SMLD ++V YG+ PL+QVA+++ + + + Sbjct: 8 KNAQAKMEKTLNSLSEELKKVRTGRAQVSMLDGIRVNYYGTPSPLSQVASISTPDAKSFL 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++ W+ ++ +E+ I +S LG+ P+ +G+V+R+ VP+ TEERR L K AE++++ Sbjct: 68 IAPWEVAILKDIEQAIIKSELGMAPMNDGKVIRLKVPDLTEERRKDLAKQVKKIAEEARV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VR RRD D +KK +K SED E DIQK+TD IK +D EEK+K I+ Sbjct: 128 AVRMARRDANDEVKKLQKDKAVSEDEGKKAEADIQKVTDDFIKKVDQVAEEKEKAILTI 186 >gi|254521520|ref|ZP_05133575.1| ribosome recycling factor [Stenotrophomonas sp. SKA14] gi|219719111|gb|EED37636.1| ribosome recycling factor [Stenotrophomonas sp. SKA14] Length = 184 Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats. Identities = 72/180 (40%), Positives = 107/180 (59%), Gaps = 3/180 (1%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYG-SHVPLNQVANVTVLEPRML 66 N + RM +I LK + ++RTGR +P++LD V V AYG + PLNQVA+++ + L Sbjct: 7 NNAQTRMAKSIDALKHTLTSIRTGRATPALLDRVTVNAYGNASTPLNQVASISNADAHSL 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK M+ +E+G++ P G +RI +P TEERR LVK E +K Sbjct: 67 LVTPFDKSMIKEIEKGLYNHE--FTPNTLGAAIRINMPPPTEERRKELVKQVQKEGEGAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I+VRNIR+D + K K SED E+DIQK+TD +IK++D EK+KE++ Sbjct: 125 IAVRNIRQDANKEIAKLVKDKAISEDEKKRGEDDIQKLTDGSIKDVDKVVAEKEKELLSV 184 >gi|149369635|ref|ZP_01889487.1| ribosome releasing factor [unidentified eubacterium SCB49] gi|149357062|gb|EDM45617.1| ribosome releasing factor [unidentified eubacterium SCB49] Length = 192 Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats. Identities = 79/188 (42%), Positives = 113/188 (60%), Gaps = 6/188 (3%) Query: 1 MNQVID--LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 M I+ + + K+ M +TI LKK + +R G+ +PSM+ V V YGS PL QVANV Sbjct: 9 MEDEINFIIDSTKEAMDNTIVHLKKKFVNIRAGKATPSMVGSVMVNYYGSPTPLTQVANV 68 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 + + ++ W+K ++ +E+GIH +NLG NP+ G+ + I VP TEERR L K A Sbjct: 69 NTPDGMTITIAPWEKGLIPEIEKGIHLANLGFNPMNNGESVIITVPPLTEERRRELAKQA 128 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 A AE SK+ VRN R++ + +K SED+ A+LE D+QK+TD+ I ID F Sbjct: 129 KAEAEDSKVGVRNDRKNANNEIKNL----DVSEDLKANLEADVQKMTDNHITLIDELFSV 184 Query: 179 KKKEIMHF 186 K+KEIM Sbjct: 185 KEKEIMTV 192 >gi|15645870|ref|NP_208048.1| ribosome recycling factor [Helicobacter pylori 26695] gi|210135415|ref|YP_002301854.1| ribosome recycling factor [Helicobacter pylori P12] gi|3024576|sp|P56398|RRF_HELPY RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226749931|sp|B6JN96|RRF_HELP2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|2314423|gb|AAD08302.1| ribosome releasing factor (frr) [Helicobacter pylori 26695] gi|210133383|gb|ACJ08374.1| ribosome releasing factor [Helicobacter pylori P12] Length = 185 Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats. Identities = 70/179 (39%), Positives = 107/179 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 KD M +I L +D TLR+ +VS ++LD +KV+ YG+ LNQV +V L+ L Sbjct: 7 NETKDLMQKSIQALNRDFSTLRSAKVSVNILDHIKVDYYGTPTALNQVGSVMSLDATTLQ 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S W+K ++ +ER I E+N+G+NP +G+ +++ P T E+R + K A A EK+K+ Sbjct: 67 ISPWEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTSEQRKLIAKDAKAMGEKAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIR+D + +KK K + SED + IQKITD IK ID + K+ I+ Sbjct: 127 AVRNIRQDANNQVKKLEKDKEISEDESKKAQEQIQKITDEAIKKIDESVKNKEDAILKV 185 >gi|302762955|ref|XP_002964899.1| hypothetical protein SELMODRAFT_83448 [Selaginella moellendorffii] gi|302809577|ref|XP_002986481.1| hypothetical protein SELMODRAFT_124362 [Selaginella moellendorffii] gi|300145664|gb|EFJ12338.1| hypothetical protein SELMODRAFT_124362 [Selaginella moellendorffii] gi|300167132|gb|EFJ33737.1| hypothetical protein SELMODRAFT_83448 [Selaginella moellendorffii] Length = 192 Score = 211 bits (538), Expect = 4e-53, Method: Composition-based stats. Identities = 62/174 (35%), Positives = 111/174 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ +RM TI +K + T+RTGR SP++LD V+VE YG+ V L +A ++ + ++ Sbjct: 18 EDAMERMEKTIETVKSNFNTIRTGRASPALLDRVEVEYYGTLVLLKTIAQISTPDGSTIL 77 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +D+ ++++++ I +S+LGL P +G V+R+ +P+ T ERR L+K+ E+ K+ Sbjct: 78 VQPFDRSSLSAIDKAITKSDLGLTPSNDGIVIRLNIPQLTAERRKELLKLVAKLTEEGKV 137 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 ++RN+RRD + +K K K S D V L ++Q++TD +K +D F++K+K Sbjct: 138 ALRNVRRDAIKSYEKLEKEKKISTDNVKDLSTEMQRLTDEYVKTVDDLFKQKEK 191 >gi|282880955|ref|ZP_06289646.1| ribosome recycling factor [Prevotella timonensis CRIS 5C-B1] gi|281305178|gb|EFA97247.1| ribosome recycling factor [Prevotella timonensis CRIS 5C-B1] Length = 186 Score = 211 bits (538), Expect = 4e-53, Method: Composition-based stats. Identities = 76/180 (42%), Positives = 116/180 (64%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ ++RM ++L++ + +R GR + ++LD V V +YGS VPLNQVANV+V + R + Sbjct: 8 LKEAEERMQMAATYLEESLSRVRAGRANVAILDGVMVNSYGSMVPLNQVANVSVPDARTI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK+ + +E+ I +S++G+ P G+++R+ +P+ TEERR LVK + EK+K Sbjct: 68 AIKPWDKKAIKDIEKAIMDSDVGITPENNGEIIRLGIPQPTEERRRDLVKQCNKIGEKAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I VRN+R + D LKK+ K G SED EN++Q + D IKN+D EEK KEIM Sbjct: 128 IEVRNVRSEIKDRLKKAVKDG-LSEDAGKDAENELQNVHDKYIKNVDRLLEEKTKEIMTV 186 >gi|109946849|ref|YP_664077.1| ribosome recycling factor [Helicobacter acinonychis str. Sheeba] gi|123362775|sp|Q17Z48|RRF_HELAH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|109714070|emb|CAJ99078.1| frr [Helicobacter acinonychis str. Sheeba] Length = 185 Score = 211 bits (538), Expect = 4e-53, Method: Composition-based stats. Identities = 68/179 (37%), Positives = 107/179 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 KD M +I L ++ TLR+ +VS ++LD +KV+ YG+ LNQV +V L+ L Sbjct: 7 NETKDLMQKSIQALNREFSTLRSAKVSVNILDHIKVDYYGTPTALNQVGSVMSLDATTLQ 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S W+K ++ +ER I E+N+G+NP +G+ +++ P T E+R + K A A EK+K+ Sbjct: 67 ISPWEKNLLKEIERAIQEANIGVNPNNDGETIKLFFPPMTTEQRKLIAKDAKAMGEKAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIR+D + +KK K + SED + +QKITD IK ID + K+ I+ Sbjct: 127 AVRNIRQDANNKVKKLEKDKEISEDESKKAQEQVQKITDEAIKKIDESVKNKEDAILKV 185 >gi|255559434|ref|XP_002520737.1| ribosome recycling factor, putative [Ricinus communis] gi|223540122|gb|EEF41699.1| ribosome recycling factor, putative [Ricinus communis] Length = 247 Score = 211 bits (538), Expect = 4e-53, Method: Composition-based stats. Identities = 61/155 (39%), Positives = 97/155 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ K RM TI ++ + ++RTGR +PSMLD ++VE YG+ V L +A ++ + L+ Sbjct: 84 KDAKARMEKTIETVRTNFNSIRTGRANPSMLDKIEVEYYGTPVSLKSIAQISTPDASSLL 143 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +DK + S+E+ I S+LGL P +G+V+R+ +P+ T ERR + K+ AE+ K+ Sbjct: 144 VQPYDKSSLKSIEKAIVSSDLGLTPNNDGEVIRLSIPQLTSERRKEMSKMVAKLAEEGKV 203 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQ 162 ++RNIRRD + +K K K SED V L D+Q Sbjct: 204 ALRNIRRDALKAYEKLEKEKKLSEDNVKDLSGDLQ 238 >gi|281425442|ref|ZP_06256355.1| ribosome recycling factor [Prevotella oris F0302] gi|281400435|gb|EFB31266.1| ribosome recycling factor [Prevotella oris F0302] Length = 186 Score = 211 bits (538), Expect = 4e-53, Method: Composition-based stats. Identities = 75/180 (41%), Positives = 115/180 (63%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + ++RM +L ++ +R GR + ++LD VKV++YGS VPLNQVA V+ + R + Sbjct: 8 LSDAQERMEMAAMYLADELTHIRAGRANTAILDGVKVDSYGSKVPLNQVATVSTPDARTI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK+ + +E+ I +S++G+ P G+V+R+ +P+ TEERR LVK + E++K Sbjct: 68 AIRPWDKKAIKDIEKAIMDSDVGITPENNGEVIRLGIPQPTEERRKELVKQCNKIGERTK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 + VRN+R + D LKK+ K G SED+ END+QK+ D IK ID EK+KEIM Sbjct: 128 VEVRNVRGEVKDKLKKAIKEG-LSEDLEKDAENDLQKVHDKFIKRIDELLTEKQKEIMTV 186 >gi|317505061|ref|ZP_07963008.1| ribosome recycling factor [Prevotella salivae DSM 15606] gi|315663839|gb|EFV03559.1| ribosome recycling factor [Prevotella salivae DSM 15606] Length = 186 Score = 211 bits (538), Expect = 4e-53, Method: Composition-based stats. Identities = 75/180 (41%), Positives = 115/180 (63%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + ++RM +L ++ +R GR + ++LD VKV++YGS VPLNQVAN++ + R + Sbjct: 8 LSDAQERMEMAAMYLADELTHIRAGRANTAILDGVKVDSYGSKVPLNQVANISTPDARTI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK+ + +E+ I +S +G+ P G+V+R+ +P+ TEERR LVK + E++K Sbjct: 68 AIRPWDKKAIKDIEKAIMDSGVGITPENNGEVIRLGIPQPTEERRKELVKQCNKIGERTK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 + VRN+R + D LKK+ K G SED+ END+QK+ D IK ID EK+KEIM Sbjct: 128 VEVRNVRGEVKDKLKKAIKEG-LSEDLEKDAENDLQKVHDKFIKRIDDLLNEKQKEIMTV 186 >gi|329961847|ref|ZP_08299861.1| ribosome recycling factor [Bacteroides fluxus YIT 12057] gi|328531287|gb|EGF58131.1| ribosome recycling factor [Bacteroides fluxus YIT 12057] Length = 186 Score = 211 bits (537), Expect = 5e-53, Method: Composition-based stats. Identities = 76/187 (40%), Positives = 109/187 (58%), Gaps = 2/187 (1%) Query: 1 MNQVID-LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVT 59 M V D L +++M + +L++ ++ +R G+ +LD ++V++YGS VP+N VA VT Sbjct: 1 MKDVKDILDEAQEKMDMAVMYLEEALVHIRAGKADVRLLDGIRVDSYGSMVPINNVAAVT 60 Query: 60 VLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 + R + + WDK M +E+ I +S LG+ P G+++RI +P TEERR L K Sbjct: 61 TPDARSIAIKPWDKSMFRVIEKAIIDSPLGIMPENNGEIIRIGIPPLTEERRKQLAKQCK 120 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 E +K+SVRN RRD +D LKKS K G +ED S E +QKI D IK ID K Sbjct: 121 GEGETAKVSVRNARRDAIDALKKSVKDG-LAEDAQKSGEEKLQKIHDKYIKQIDDMLAAK 179 Query: 180 KKEIMHF 186 KEIM Sbjct: 180 DKEIMTV 186 >gi|257068198|ref|YP_003154453.1| ribosome recycling factor [Brachybacterium faecium DSM 4810] gi|256559016|gb|ACU84863.1| ribosome recycling factor [Brachybacterium faecium DSM 4810] Length = 188 Score = 211 bits (537), Expect = 5e-53, Method: Composition-based stats. Identities = 55/177 (31%), Positives = 98/177 (55%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ + +M ++ K + +RTGR + +ML + VE YG+ PLNQ++++ E R + Sbjct: 9 LKDAEAKMKKSVEVTKDEFTAIRTGRANAAMLQGITVEYYGAPTPLNQLSSLQFPEARTI 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK ++ +E + +S+LG+NP G LR+ +P TEERR VK+A AE + Sbjct: 69 IVTPYDKSAMSGIETALRDSDLGVNPTNNGDNLRVVLPALTEERRKDYVKLARTKAEDGR 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 ++VR R + ++K K + ED E +++ +T ID K+ E+ Sbjct: 129 VAVRGSRGNAKKAIEKLVKDKEIGEDEGTRAEKELEALTKKYNDQIDEALGLKETEL 185 >gi|300778312|ref|ZP_07088170.1| ribosome recycling factor [Chryseobacterium gleum ATCC 35910] gi|300503822|gb|EFK34962.1| ribosome recycling factor [Chryseobacterium gleum ATCC 35910] Length = 184 Score = 211 bits (537), Expect = 5e-53, Method: Composition-based stats. Identities = 68/180 (37%), Positives = 103/180 (57%), Gaps = 3/180 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+++K M + L +R GR S +M+ V VE YG+ P+NQVANV++ + + Sbjct: 8 LESVKQDMDAAVKHLDHAFQRIRAGRASTTMVQDVMVEYYGAMTPINQVANVSIPDAMTI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WD+ + ++E+ I SNLG P G+ + + VP TEERR L K A A AE++K Sbjct: 68 SIQPWDRTAINAIEKAIINSNLGFAPSNNGENIILNVPPLTEERRKELAKQAKAEAEQTK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRN R+DG+ LKK SED++ +E +IQ TD +K D + K+ EIM Sbjct: 128 VTVRNARQDGLKELKKL---DGVSEDVIKGVEEEIQTYTDKYVKLCDEHLKTKEAEIMKV 184 >gi|260591376|ref|ZP_05856834.1| ribosome recycling factor [Prevotella veroralis F0319] gi|260536742|gb|EEX19359.1| ribosome recycling factor [Prevotella veroralis F0319] Length = 186 Score = 211 bits (537), Expect = 5e-53, Method: Composition-based stats. Identities = 72/180 (40%), Positives = 112/180 (62%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +RM +L ++ +R GR + ++LD V+V++YGS VPLNQVA+V V + R + Sbjct: 8 LNDASERMEMAAMYLSDELQRIRAGRANVAILDGVRVDSYGSKVPLNQVASVMVPDARTI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK+ + +E+ I +S++G+ P G+++R+ +P+ TEERR LVK + E++K Sbjct: 68 AIKPWDKKAIKDIEKAIMDSDVGITPENNGEMIRLNLPQPTEERRRDLVKQCNKIGERAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 + +RN+R D D LKK+ K G SED E +QKI D IK +D EK+KEIM Sbjct: 128 VEIRNVRSDIKDKLKKAIKDG-LSEDNEKDAELSLQKIHDKFIKQVDELLAEKQKEIMTV 186 >gi|108563625|ref|YP_627941.1| ribosome recycling factor [Helicobacter pylori HPAG1] gi|123246899|sp|Q1CS05|RRF_HELPH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|107837398|gb|ABF85267.1| ribosome releasing factor [Helicobacter pylori HPAG1] Length = 185 Score = 211 bits (537), Expect = 5e-53, Method: Composition-based stats. Identities = 69/179 (38%), Positives = 107/179 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 KD M ++ L +D TLR+ +VS ++LD +KV+ YG+ LNQV +V L+ L Sbjct: 7 NETKDLMQKSVQALNRDFSTLRSAKVSVNILDHIKVDYYGTPTALNQVGSVMSLDATTLQ 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S W+K ++ +ER I E+N+G+NP +G+ +++ P T E+R + K A A EK+K+ Sbjct: 67 ISPWEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTTEQRKLIAKDAKAMGEKAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIR+D + +KK K + SED + IQKITD IK ID + K+ I+ Sbjct: 127 AVRNIRQDANNKVKKLEKDKEISEDESKKAQEQIQKITDEAIKKIDESVKNKEDAILKV 185 >gi|317180982|dbj|BAJ58768.1| ribosome recycling factor [Helicobacter pylori F32] Length = 185 Score = 211 bits (537), Expect = 5e-53, Method: Composition-based stats. Identities = 70/179 (39%), Positives = 107/179 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 KD M +I L +D TLR+ +VS ++LD +KV+ YG+ LNQV +V L+ L Sbjct: 7 NETKDLMQKSIQALNRDFSTLRSAKVSVNILDHIKVDYYGTPTALNQVGSVMSLDATTLQ 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S W+K ++ +ER I E+N+G+NP +G+ +++ P T E+R + K A A EK+K+ Sbjct: 67 ISPWEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTTEQRKLIAKDAKAMGEKAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIR+D + +KK K + SED + IQKITD IK ID + K+ I+ Sbjct: 127 AVRNIRQDANNKIKKLEKDKEISEDESKKAQEQIQKITDEAIKKIDESVKNKEDAILKV 185 >gi|190573499|ref|YP_001971344.1| ribosome recycling factor [Stenotrophomonas maltophilia K279a] gi|229890169|sp|B2FIA5|RRF_STRMK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|190011421|emb|CAQ45039.1| putative ribosome recycling factor [Stenotrophomonas maltophilia K279a] Length = 184 Score = 210 bits (536), Expect = 6e-53, Method: Composition-based stats. Identities = 71/180 (39%), Positives = 107/180 (59%), Gaps = 3/180 (1%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYG-SHVPLNQVANVTVLEPRML 66 N + RM +I LK + ++RTGR +P++LD V V AYG + PLNQVA+++ + L Sbjct: 7 NNAQTRMAKSIDALKHTLTSIRTGRATPALLDRVTVNAYGNASTPLNQVASISNADAHSL 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK M+ +E+G+ N P G +RI +P TEERR LVK E +K Sbjct: 67 LVTPFDKGMIKEIEKGL--YNAEFTPNTLGTAIRINMPPPTEERRKELVKQVQKEGEGAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIR+D + K K SED E+DIQK+TD+ IK++D +K+KE++ Sbjct: 125 IAIRNIRQDANKEIAKLVKDKAISEDEKKRGEDDIQKLTDTNIKDVDKVVADKEKELLSV 184 >gi|313158407|gb|EFR57806.1| ribosome recycling factor [Alistipes sp. HGB5] Length = 185 Score = 210 bits (536), Expect = 6e-53, Method: Composition-based stats. Identities = 67/186 (36%), Positives = 109/186 (58%), Gaps = 1/186 (0%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ L RM I L+++++ +R G+ SP+ L+ + V+ +GS VP++ A+VTV Sbjct: 1 MDTKTILNEASGRMQKAIDHLEEELLNVRAGKASPNALNGIMVDYFGSQVPVSGAASVTV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + + +++ WDK M+ +E+ I +SN+GL P G+ +R+ +P TEERR LVK Sbjct: 61 PDAKTILIQPWDKNMLRPLEKAIIDSNIGLTPSNNGEQIRLTIPPLTEERRKELVKQIRG 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE ++IS+RN RRD ++ KK++K G ED E QK+ + K +D + K+ Sbjct: 121 EAETARISLRNARRDAVEAFKKAQKEG-MPEDESKDGETQSQKLLEKFSKLLDEALQRKE 179 Query: 181 KEIMHF 186 KEIM Sbjct: 180 KEIMTV 185 >gi|254779799|ref|YP_003057905.1| ribosome recycling factor [Helicobacter pylori B38] gi|254001711|emb|CAX29942.1| Ribosome recycling factor (Ribosome releasing factor) (RRF) [Helicobacter pylori B38] gi|317009940|gb|ADU80520.1| ribosome recycling factor [Helicobacter pylori India7] Length = 185 Score = 210 bits (536), Expect = 7e-53, Method: Composition-based stats. Identities = 69/179 (38%), Positives = 107/179 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 KD M +I L +D TLR+ +VS ++LD +KV+ YG+ LNQV +V L+ L Sbjct: 7 NETKDLMQKSIQALNRDFSTLRSAKVSVNILDHIKVDYYGTPTALNQVGSVMSLDATTLQ 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S W+K ++ +ER I E+N+G+NP +G+ +++ P T ++R + K A A EK+K+ Sbjct: 67 ISPWEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTTDQRKLIAKDAKAMGEKAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIR+D + +KK K + SED + IQKITD IK ID + K+ I+ Sbjct: 127 AVRNIRQDANNQVKKLEKDKEISEDESKKAQEQIQKITDEAIKKIDESVKNKEDAILKV 185 >gi|282890409|ref|ZP_06298937.1| ribosome recycling factor [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499791|gb|EFB42082.1| ribosome recycling factor [Parachlamydia acanthamoebae str. Hall's coccus] Length = 183 Score = 210 bits (536), Expect = 7e-53, Method: Composition-based stats. Identities = 61/177 (34%), Positives = 104/177 (58%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K++M + LK D+ ++RTG+ +P MLD + VE YGS + L +A + E R L Sbjct: 4 VKQTKEKMEAALEHLKNDLNSIRTGQANPGMLDGITVEVYGSQMRLRDIATINSPEARQL 63 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +D ++ + I +NLG PIV+G +RI +P E R + K+ H E++K Sbjct: 64 LITPFDAGTAGAIGKSIERANLGFMPIVDGNAVRIKIPPMDESLRKEMAKLCHKKQEEAK 123 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +++RN RRD D ++K + +G+ ED + E +IQ++TD K D +K+KEI Sbjct: 124 VAIRNHRRDANDLVRKQKAAGELPEDQMKKQEKEIQELTDKYCKLADEIAAKKEKEI 180 >gi|325270332|ref|ZP_08136937.1| ribosome recycling factor [Prevotella multiformis DSM 16608] gi|324987276|gb|EGC19254.1| ribosome recycling factor [Prevotella multiformis DSM 16608] Length = 207 Score = 210 bits (536), Expect = 7e-53, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 116/180 (64%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ +RM +L ++ +R GR + ++LD V+V++YGS VPLNQVA V V + R + Sbjct: 29 LKDAGERMEMAAMYLGDELQRIRAGRANVAILDGVRVDSYGSKVPLNQVATVMVPDARTI 88 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WD++ + +E+ I +S++G+ P G+++R+ +P+ TEERR LVK + E++K Sbjct: 89 AIKPWDRKAIKDIEKAIMDSDVGITPENNGEMIRLNLPQPTEERRRELVKQCNKIGERTK 148 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 + +RN+R D D LKK+ K G SED END+QKI D IK +D+ +EK+KEIM Sbjct: 149 VEIRNVRSDIKDKLKKAIKDG-LSEDNEKDAENDLQKIHDKYIKQVDALLDEKQKEIMTV 207 >gi|257066151|ref|YP_003152407.1| ribosome recycling factor [Anaerococcus prevotii DSM 20548] gi|256798031|gb|ACV28686.1| ribosome recycling factor [Anaerococcus prevotii DSM 20548] Length = 186 Score = 210 bits (536), Expect = 7e-53, Method: Composition-based stats. Identities = 71/179 (39%), Positives = 112/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + KD M + K + ++ GR + ++LD + YG+ P+NQ A V++ E R+LV Sbjct: 8 KQAKDEMTKALDSFDKRIANIKAGRATEAILDGITFSYYGTETPINQAATVSIPEARLLV 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + WDK + +E+ I +SN+G+ P +G+V+R+P P+ TEERR K YAE +KI Sbjct: 68 IKPWDKTNIGPIEKAILKSNIGITPQNDGEVIRLPFPQLTEERRKEYTKEVDTYAEDAKI 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +RN RR+ MD +KKS KSG +ED +LE++IQKITD I+++++ +K KE+M Sbjct: 128 VIRNKRREAMDEVKKSEKSGDITEDDRYTLEDEIQKITDKMIEDVEALASKKNKELMSV 186 >gi|94676465|ref|YP_588960.1| ribosome recycling factor [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|190360234|sp|Q1LSV4|RRF_BAUCH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|94219615|gb|ABF13774.1| ribosome recycling factor [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 185 Score = 210 bits (536), Expect = 7e-53, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 118/179 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ + RM + K ++ LRTGR +P++LD +KV+ YGS +PL Q+AN+ V + R LV Sbjct: 7 QDAEVRMEKCLETFKNNISKLRTGRANPNLLDNIKVDYYGSIMPLRQLANIIVEDTRTLV 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++++D+ ++ VE+ I S+LGL P + G ++R+ +P TEERR L+K+ AE+ KI Sbjct: 67 ITLFDQSIIKRVEKAIIISDLGLTPDLSGTIIRVQLPSLTEERRRNLIKIVRNEAEQGKI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRNIRRD DH+K K+ S D +++IQKIT++ I+ +D EK++E++ F Sbjct: 127 SVRNIRRDANDHIKILLKNKAISIDEERRSQSEIQKITEAWIRRLDQILSEKERELIDF 185 >gi|126662970|ref|ZP_01733968.1| ribosome recycling factor (ribosome releasing factor) [Flavobacteria bacterium BAL38] gi|126624628|gb|EAZ95318.1| ribosome recycling factor (ribosome releasing factor) [Flavobacteria bacterium BAL38] Length = 187 Score = 210 bits (536), Expect = 7e-53, Method: Composition-based stats. Identities = 79/188 (42%), Positives = 114/188 (60%), Gaps = 3/188 (1%) Query: 1 MNQVID--LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 M + I+ L + K+ M +++ L+K+ + +R G+ SP ML V V+ YGS PL+QVAN+ Sbjct: 1 MTEEINFILDSAKEAMIGSVAHLEKEFLNIRAGKASPQMLGGVFVDYYGSQTPLSQVANI 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 + R L V+ W+K M+ +E+ I +NLGLNP+ G + I +P TEERR LVK A Sbjct: 61 NAADARTLTVTPWEKNMLHPIEKAIMIANLGLNPMNNGDNIIINIPALTEERRRDLVKQA 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 + AE +KI +RN R+D +KK K G A ED+ E D+QK+TDS IK I+ Sbjct: 121 KSEAEDAKIGIRNHRKDANSDIKKEEKEGTA-EDICKKAEEDVQKLTDSFIKKIEELLAV 179 Query: 179 KKKEIMHF 186 K+ EIM Sbjct: 180 KEAEIMKV 187 >gi|315587147|gb|ADU41528.1| ribosome recycling factor [Helicobacter pylori 35A] Length = 185 Score = 210 bits (535), Expect = 7e-53, Method: Composition-based stats. Identities = 70/179 (39%), Positives = 108/179 (60%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 KD M +I L +D TLR+ +VS ++LD +KV+ YG+ LNQV +V L+ L Sbjct: 7 NETKDLMQKSIQALNRDFSTLRSAKVSVNILDHIKVDYYGTPTALNQVGSVMSLDATTLQ 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S W+K ++ +ER I E+N+G+NP +G+ +++ P T E+R + K A A EK+K+ Sbjct: 67 ISPWEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTTEQRKLIAKDAKAMGEKAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIR+D + +KK K + SED + IQKITD +IK ID + K+ I+ Sbjct: 127 AVRNIRQDANNKIKKLEKDKEISEDESKKAQEQIQKITDESIKTIDESVKNKEDAILKV 185 >gi|317013043|gb|ADU83651.1| ribosome recycling factor [Helicobacter pylori Lithuania75] Length = 185 Score = 210 bits (535), Expect = 8e-53, Method: Composition-based stats. Identities = 68/179 (37%), Positives = 107/179 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 KD M ++ L +D TLR+ +VS ++LD +KV+ YG+ LNQV +V L+ + Sbjct: 7 NETKDLMQKSVQALNRDFSTLRSAKVSVNILDHIKVDYYGTPTALNQVGSVMSLDATTIQ 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S W+K ++ +ER I E+N+G+NP +G+ +++ P T E+R + K A A EK+K+ Sbjct: 67 ISPWEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTSEQRKLIAKDAKAMGEKAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIR+D + +KK K + SED + IQKITD IK ID + K+ I+ Sbjct: 127 AVRNIRQDANNKVKKLEKDKEISEDESKKAQEQIQKITDEAIKKIDESVKNKEDAILKV 185 >gi|297380436|gb|ADI35323.1| ribosome recycling factor [Helicobacter pylori v225d] gi|308062540|gb|ADO04428.1| ribosome recycling factor [Helicobacter pylori Cuz20] gi|308064035|gb|ADO05922.1| ribosome recycling factor [Helicobacter pylori Sat464] gi|332674059|gb|AEE70876.1| ribosome recycling factor [Helicobacter pylori 83] Length = 185 Score = 210 bits (535), Expect = 8e-53, Method: Composition-based stats. Identities = 70/179 (39%), Positives = 107/179 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 KD M +I L +D TLR+ +VS ++LD +KV+ YG+ LNQV +V L+ L Sbjct: 7 NETKDLMQKSIQALNRDFSTLRSAKVSVNILDHIKVDYYGTPTALNQVGSVMSLDATTLQ 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S W+K ++ +ER I E+N+G+NP +G+ +++ P T E+R + K A A EK+K+ Sbjct: 67 ISPWEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTTEQRKLIAKDAKAMGEKAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIR+D + +KK K + SED + IQKITD IK ID + K+ I+ Sbjct: 127 AVRNIRQDANNKIKKLEKDKEISEDESKKAQEQIQKITDEAIKTIDESVKNKEDAILKV 185 >gi|218283542|ref|ZP_03489532.1| hypothetical protein EUBIFOR_02122 [Eubacterium biforme DSM 3989] gi|218215810|gb|EEC89348.1| hypothetical protein EUBIFOR_02122 [Eubacterium biforme DSM 3989] Length = 181 Score = 210 bits (535), Expect = 8e-53, Method: Composition-based stats. Identities = 76/186 (40%), Positives = 115/186 (61%), Gaps = 5/186 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ + L N +++M I L+ ++ +RTGR S ML+ V+VE YG+ P+NQ+A ++V Sbjct: 1 MSDI--LLNAEEKMMGAIDNLESNLRQIRTGRASGQMLERVQVEYYGAMTPINQIAQISV 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 +E LVV +D+ +V + I +NLGLNP E V+RI VP+ TE+RR L K A Sbjct: 59 VEGTQLVVKPYDRSIVKGIAHAIQAANLGLNPQAEADVIRIQVPQLTEDRRKELAKDAQK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 Y E++K+++RN+RRD D +K K + ED + QK+TD IK++DS E KK Sbjct: 119 YGEEAKVAIRNVRRDANDAIK---KDKELPEDEKKQTLEESQKLTDKYIKDVDSITETKK 175 Query: 181 KEIMHF 186 KEI++ Sbjct: 176 KEILNV 181 >gi|225166035|ref|ZP_03727781.1| ribosome recycling factor [Opitutaceae bacterium TAV2] gi|224799722|gb|EEG18205.1| ribosome recycling factor [Opitutaceae bacterium TAV2] Length = 181 Score = 210 bits (535), Expect = 8e-53, Method: Composition-based stats. Identities = 65/180 (36%), Positives = 112/180 (62%), Gaps = 4/180 (2%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + RM + + + TG+ +P+M++ V ++AYGS + + A + + RM+ Sbjct: 6 LTEAQTRMKKAVDHTLHEFANIHTGKATPAMVEGVMIDAYGSQMRIKDCAAIMTPDARMI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK +V ++ +GI +NLG NP V+G ++R+P+PE + ERRL VKVA+ AE+ + Sbjct: 66 VIQPWDKGLVQAISKGIQIANLGFNPNVDGNLIRVPLPEMSRERRLEFVKVANRLAEEGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 + VRN+RRD ++++KK++ SED LE DIQ +TD +I+ ++ K+KE++ Sbjct: 126 VHVRNLRRDTLENVKKAK----LSEDETKRLEKDIQTLTDKSIEEVNKHLAAKEKELLAV 181 >gi|188528045|ref|YP_001910732.1| ribosome recycling factor [Helicobacter pylori Shi470] gi|238691946|sp|B2UV20|RRF_HELPS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|188144285|gb|ACD48702.1| ribosome recycling factor [Helicobacter pylori Shi470] Length = 185 Score = 210 bits (535), Expect = 8e-53, Method: Composition-based stats. Identities = 70/179 (39%), Positives = 107/179 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 KD M +I L +D TLR+ +VS ++LD +KV+ YG+ LNQV +V L+ L Sbjct: 7 NETKDLMQKSIQALNRDFSTLRSAKVSVNILDHIKVDYYGTPTTLNQVGSVMSLDATTLQ 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S W+K ++ +ER I E+N+G+NP +G+ +++ P T E+R + K A A EK+K+ Sbjct: 67 ISPWEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTTEQRKLIAKDAKAMGEKAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIR+D + +KK K + SED + IQKITD IK ID + K+ I+ Sbjct: 127 AVRNIRQDANNKIKKLEKDKEISEDESKKAQEQIQKITDEAIKTIDESVKNKEDAILKV 185 >gi|312879901|ref|ZP_07739701.1| ribosome recycling factor [Aminomonas paucivorans DSM 12260] gi|310783192|gb|EFQ23590.1| ribosome recycling factor [Aminomonas paucivorans DSM 12260] Length = 185 Score = 210 bits (535), Expect = 8e-53, Method: Composition-based stats. Identities = 66/179 (36%), Positives = 120/179 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++++K R +I LK + +RTGR P++++ +KV+ +G+ PL Q+A V + E R + Sbjct: 6 IKDMKHRTEKSIEHLKTTLQGIRTGRAHPALVEEIKVDYFGTLTPLKQMAMVNIPESRQI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V++ WDK + ++E+ I S+LG+NP ++G+ +R+ +PE T ERR+ L K+ + Y+E++K Sbjct: 66 VIAPWDKTALKAIEKAIQASSLGVNPRIDGESIRLTLPELTRERRVELSKLVNKYSEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +++RNIRR+ ++ LKK K G SED + L+ ++Q+ TD + ++ EK KEI++ Sbjct: 126 VAIRNIRREVLEALKKMEKDGTISEDELKKLQKEVQEHTDEATRKVEQATAEKDKEILN 184 >gi|224539083|ref|ZP_03679622.1| hypothetical protein BACCELL_03983 [Bacteroides cellulosilyticus DSM 14838] gi|224519301|gb|EEF88406.1| hypothetical protein BACCELL_03983 [Bacteroides cellulosilyticus DSM 14838] Length = 186 Score = 210 bits (535), Expect = 9e-53, Method: Composition-based stats. Identities = 72/180 (40%), Positives = 105/180 (58%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + +L++ + +R G+ +LD ++V++YGS VP+N VA V + R + Sbjct: 8 LDEAQEKMDMAVMYLEEALAHIRAGKADVRLLDGIRVDSYGSMVPINNVAAVNTPDARSI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK M +E+ I +S+LG+ P G+++RI +P TEERR L K E +K Sbjct: 68 VIKPWDKSMFKVIEKAIIDSSLGIMPENNGEIIRIGIPPLTEERRKQLAKQCKGEGETAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +SVRN RRD +D LKKS K G +ED E +QKI D IK ID K KEIM Sbjct: 128 VSVRNARRDAIDGLKKSVKDG-LAEDAQKGGEEKLQKIHDKYIKQIDDMLAAKDKEIMTV 186 >gi|53711978|ref|YP_097970.1| ribosome recycling factor [Bacteroides fragilis YCH46] gi|60680182|ref|YP_210326.1| ribosome recycling factor [Bacteroides fragilis NCTC 9343] gi|253563986|ref|ZP_04841443.1| ribosome-recycling factor [Bacteroides sp. 3_2_5] gi|255007502|ref|ZP_05279628.1| ribosome recycling factor [Bacteroides fragilis 3_1_12] gi|313145197|ref|ZP_07807390.1| ribosome recycling factor [Bacteroides fragilis 3_1_12] gi|60390242|sp|Q64YJ0|RRF_BACFR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|81316748|sp|Q5LHL2|RRF_BACFN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|52214843|dbj|BAD47436.1| ribosome recycling factor [Bacteroides fragilis YCH46] gi|60491616|emb|CAH06368.1| putative ribosome recycling factor [Bacteroides fragilis NCTC 9343] gi|251947762|gb|EES88044.1| ribosome-recycling factor [Bacteroides sp. 3_2_5] gi|301161707|emb|CBW21247.1| putative ribosome recycling factor [Bacteroides fragilis 638R] gi|313133964|gb|EFR51324.1| ribosome recycling factor [Bacteroides fragilis 3_1_12] Length = 186 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 69/180 (38%), Positives = 110/180 (61%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +++M + +L++ + +R G+ S +LD ++V++YGS VP++ VA VT + R + Sbjct: 8 IEESQEKMDMAVMYLEEALAHIRAGKASTRLLDGIRVDSYGSMVPISNVAAVTTPDARSI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK M +E+ I +S+LG+ P G+++RI +P TEERR L K A E +K Sbjct: 68 TIKPWDKSMFRVIEKAIIDSDLGIMPENNGEIIRIGIPPLTEERRKQLAKQCKAEGETAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+RN RRDG+D LKK+ K G +ED + E +QK+ D I I+ EK KEIM Sbjct: 128 VSIRNARRDGIDALKKAVKDG-LAEDEQKNAEAKLQKVHDKYIAKIEEMLAEKDKEIMTV 186 >gi|269127613|ref|YP_003300983.1| ribosome recycling factor [Thermomonospora curvata DSM 43183] gi|268312571|gb|ACY98945.1| ribosome recycling factor [Thermomonospora curvata DSM 43183] Length = 185 Score = 209 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 74/180 (41%), Positives = 112/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M ++ K+D +RTGRV+P+M + + YG+ P+NQ+A+ T+ EPRM+ Sbjct: 6 LFEAEEKMEKAVAVAKEDFAGIRTGRVTPAMFSKITADYYGTPTPINQLASFTLPEPRMV 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V V+DK + +VE+ I ES+LG+NP +G V+R+ PE +EERR VK+A AE+S+ Sbjct: 66 IVQVFDKSSLPAVEKAIRESDLGVNPTNDGNVIRVVFPELSEERRREYVKIAGNKAEESR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 IS+RNIRR D L K K G+A ED V E ++ T + ID E KK E++ Sbjct: 126 ISIRNIRRRAKDSLDKLAKEGEAGEDEVRRAEKELDDATHKYVAKIDELLEHKKAELLEV 185 >gi|188996515|ref|YP_001930766.1| ribosome recycling factor [Sulfurihydrogenibium sp. YO3AOP1] gi|188931582|gb|ACD66212.1| ribosome recycling factor [Sulfurihydrogenibium sp. YO3AOP1] Length = 184 Score = 209 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 69/180 (38%), Positives = 118/180 (65%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ + RM ++ K++++ +RTGR S +++ +K++ YG+ +PL Q+A ++ EP + Sbjct: 6 LKEAEKRMKGAVNKYKEELLGIRTGRASTGLVENIKIDYYGTELPLKQLATISTPEPAQI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK V +E+ + E+NLG NP EG V+R+ +P TEERR +VK+ H +AE+++ Sbjct: 66 VIQTWDKSAVKLIEKALMEANLGANPQTEGNVIRLNLPPMTEERRKEVVKMIHKFAEEAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIRRD ++++K +K G SED + +QK+TD I+ I+ E K+KEI+ Sbjct: 126 IAIRNIRRDEKENIEKLKKEG-FSEDDIKKALEKLQKLTDRYIEEINQLTEAKEKEILSI 184 >gi|189463438|ref|ZP_03012223.1| hypothetical protein BACCOP_04157 [Bacteroides coprocola DSM 17136] gi|189429867|gb|EDU98851.1| hypothetical protein BACCOP_04157 [Bacteroides coprocola DSM 17136] Length = 186 Score = 209 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 71/180 (39%), Positives = 102/180 (56%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M I +L+ + +R G+ +LD ++V++YGS VP+N VA VT + R + Sbjct: 8 LSGAEEKMDMAIMYLEDALAHIRAGKADVRLLDGIRVDSYGSMVPINNVAAVTTPDARSI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK M +E+ I +S LG+ P G+++RI +P TEERR L K E +K Sbjct: 68 AIKPWDKSMFRVIEKAIIDSELGIMPENNGEIIRIGIPPLTEERRKQLAKQCKGEGETAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +SVRN RRD +D LKK+ K G ED + E +QK D IK ID K KEIM Sbjct: 128 VSVRNARRDAIDALKKAVKDG-MPEDEQKNSEAKLQKSHDKYIKQIDDMLAAKDKEIMTV 186 >gi|270294558|ref|ZP_06200760.1| ribosome recycling factor [Bacteroides sp. D20] gi|270276025|gb|EFA21885.1| ribosome recycling factor [Bacteroides sp. D20] Length = 200 Score = 209 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 76/187 (40%), Positives = 106/187 (56%), Gaps = 2/187 (1%) Query: 1 MNQVID-LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVT 59 M V D L ++ M I +L + + +R G+ +LD ++V++YGS VP+N VA VT Sbjct: 15 MRDVKDILDEAQESMDMAIMYLDEALAHIRAGKADIRLLDGIRVDSYGSMVPINNVAAVT 74 Query: 60 VLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 + R + + WDK M +E+ I +S+LG+ P G+++RI +P TEERR L K Sbjct: 75 TPDARSIAIKPWDKSMFRVIEKAIIDSSLGIMPENNGEIIRIGIPPLTEERRKQLAKQCK 134 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 E +K+SVRN RRD +D LKKS K G +ED E +QKI D IK ID K Sbjct: 135 GEGETAKVSVRNARRDAIDALKKSVKDG-LAEDAQKGGEEKLQKIHDKFIKQIDDMLAAK 193 Query: 180 KKEIMHF 186 KEIM Sbjct: 194 DKEIMTV 200 >gi|208435150|ref|YP_002266816.1| ribosome releasing factor [Helicobacter pylori G27] gi|226749932|sp|B5Z8Q1|RRF_HELPG RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|208433079|gb|ACI27950.1| ribosome releasing factor [Helicobacter pylori G27] Length = 185 Score = 209 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 69/179 (38%), Positives = 106/179 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 KD M +I L +D TLR+ +VS ++LD +KV+ YG+ LNQV +V L+ L Sbjct: 7 NETKDLMQKSIQALSRDFSTLRSAKVSVNILDHIKVDYYGTPTALNQVGSVMSLDATTLQ 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S W+K ++ +ER I E+N+G+NP +G+ +++ P T E+R + K A A EK+K+ Sbjct: 67 ISPWEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTTEQRKLIAKDAKAMGEKAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN R+D + +KK K + SED + IQKITD IK ID + K+ I+ Sbjct: 127 AVRNTRQDANNKVKKLEKDKEISEDESKKAQEQIQKITDEAIKKIDESVKNKEDAILKV 185 >gi|198274241|ref|ZP_03206773.1| hypothetical protein BACPLE_00381 [Bacteroides plebeius DSM 17135] gi|198272916|gb|EDY97185.1| hypothetical protein BACPLE_00381 [Bacteroides plebeius DSM 17135] Length = 186 Score = 209 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 69/180 (38%), Positives = 103/180 (57%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + +++M + +L + + +R G+ +LD ++V++YGS VP+N VA VT + R + Sbjct: 8 ISEAEEKMDMAVMYLDESLAHIRAGKADVRLLDGIRVDSYGSMVPINNVAAVTTPDARSI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK M +E+ I +S LG+ P G+++RI +P TEERR L K E +K Sbjct: 68 AIKPWDKSMFRVIEKAIIDSELGIMPENNGEIIRIGIPPLTEERRKQLSKQCKGEGETAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +SVRN RRD +D LKK+ K G ED + E +QK+ D IK ID K KEIM Sbjct: 128 VSVRNARRDAIDALKKAVKDG-MPEDEQKNSEAKLQKVHDKYIKQIDDMLAAKDKEIMTV 186 >gi|317182505|dbj|BAJ60289.1| ribosome recycling factor [Helicobacter pylori F57] Length = 185 Score = 209 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 69/179 (38%), Positives = 107/179 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 KD M +I L +D TLR+ +VS ++LD +KV+ YG+ LNQV +V L+ L Sbjct: 7 NETKDLMQKSIQALNRDFSTLRSAKVSVNILDHIKVDYYGTPTALNQVGSVMSLDATTLQ 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S W+K ++ +ER I E+N+G+NP +G+ +++ P T ++R + K A A EK+K+ Sbjct: 67 ISPWEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTTDQRKLIAKDAKAMGEKAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIR+D + +KK K + SED + IQKITD IK ID + K+ I+ Sbjct: 127 AVRNIRQDANNKIKKLEKDKEISEDESKKAQEQIQKITDEAIKTIDESVKNKEYAILKV 185 >gi|317475153|ref|ZP_07934420.1| ribosome recycling factor [Bacteroides eggerthii 1_2_48FAA] gi|316908606|gb|EFV30293.1| ribosome recycling factor [Bacteroides eggerthii 1_2_48FAA] Length = 186 Score = 209 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 75/187 (40%), Positives = 109/187 (58%), Gaps = 2/187 (1%) Query: 1 MNQVID-LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVT 59 M V D L +++M + +L++ + +R G+ +LD ++V++YGS VP+N VA VT Sbjct: 1 MKDVKDILDEAQEKMDMAVMYLEESLAHIRAGKADVRLLDGIRVDSYGSMVPINNVAAVT 60 Query: 60 VLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 + R + + WDK M +E+ I +S+LG+ P G+++RI +P TEERR L K Sbjct: 61 TPDARSIAIKPWDKSMFRVIEKAIIDSDLGIMPENNGEIIRIGIPPLTEERRKQLAKQCK 120 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 +E +K+SVRN RRD +D LKKS K G +ED E +QKI D IK ID K Sbjct: 121 NESETAKVSVRNARRDAIDALKKSVKEG-LAEDAQKGGEEKLQKIHDKYIKQIDDMLAAK 179 Query: 180 KKEIMHF 186 KEIM Sbjct: 180 DKEIMTV 186 >gi|255535426|ref|YP_003095797.1| Ribosome recycling factor [Flavobacteriaceae bacterium 3519-10] gi|255341622|gb|ACU07735.1| Ribosome recycling factor [Flavobacteriaceae bacterium 3519-10] Length = 184 Score = 209 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 71/186 (38%), Positives = 102/186 (54%), Gaps = 5/186 (2%) Query: 3 QVIDL--QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 + IDL K M + L+ +R GR S +M+ V VE YG+ PLNQVANV V Sbjct: 2 EEIDLIIDMTKQEMDAALKHLEHAFQKIRAGRASTTMVQDVMVEYYGAPTPLNQVANVMV 61 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + + + WD+ + ++E+ I SNLG P+ G+ + + VP TEERR L K A Sbjct: 62 PDAMTISIQPWDRTAIGAIEKAIINSNLGFAPMNNGENIILNVPPLTEERRRDLAKQAKG 121 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE +K++VRN R+DGM LKK SED+V E +Q++TD +K D + K+ Sbjct: 122 EAEATKVTVRNARQDGMKELKKL---DGVSEDLVKGGEATVQELTDKYVKLCDDQLKTKE 178 Query: 181 KEIMHF 186 +IM Sbjct: 179 ADIMRV 184 >gi|261838579|gb|ACX98345.1| ribosome releasing factor [Helicobacter pylori 51] Length = 185 Score = 209 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 69/179 (38%), Positives = 106/179 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 KD M +I L +D TLR+ +VS ++LD +KV+ YG+ LNQV +V L+ L Sbjct: 7 NETKDLMQKSIQALNRDFSTLRSAKVSVNILDHIKVDYYGTPTALNQVGSVMSLDATTLQ 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S W+K ++ +ER I E+N+G+NP +G+ +++ P T E+R + K A A EK+K+ Sbjct: 67 ISPWEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTTEQRKLIAKDAKAMGEKAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN R+D + +KK K + SED + IQKITD IK ID + K+ I+ Sbjct: 127 AVRNTRQDANNKIKKLEKDKEISEDESKKAQEQIQKITDEAIKQIDESVKNKEDAILKV 185 >gi|304383036|ref|ZP_07365512.1| ribosome recycling factor [Prevotella marshii DSM 16973] gi|304335819|gb|EFM02073.1| ribosome recycling factor [Prevotella marshii DSM 16973] Length = 186 Score = 209 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 76/180 (42%), Positives = 110/180 (61%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++RM FL++ + +R GR + ++LD +KV +YGS VPLNQVANV V + R + Sbjct: 8 LSESEERMEMAAMFLEEQLARIRAGRANVAILDGIKVNSYGSMVPLNQVANVAVPDARTI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V WDK+ + +E+ I +S++G+ P G+++R+ +P+ TEERR L K A EK+K Sbjct: 68 TVRPWDKKAIKDIEKAIMDSDVGITPENNGEIIRLGIPQPTEERRRELSKQCKAIGEKAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 + VRN+R D + LKK+ K G SED E+ +QKI D IK ID K KEIM Sbjct: 128 VEVRNVRADVKEKLKKAIKDG-LSEDNEKDAEDALQKIHDRYIKKIDDLLVAKDKEIMTV 186 >gi|329957499|ref|ZP_08297974.1| ribosome recycling factor [Bacteroides clarus YIT 12056] gi|328522376|gb|EGF49485.1| ribosome recycling factor [Bacteroides clarus YIT 12056] Length = 186 Score = 209 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 74/187 (39%), Positives = 108/187 (57%), Gaps = 2/187 (1%) Query: 1 MNQVID-LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVT 59 M V D L +++M + +L++ + +R G+ +LD ++V++YGS VP+N VA VT Sbjct: 1 MKDVKDILDEAQEKMDMAVMYLEESLAHIRAGKADVRLLDGIRVDSYGSMVPINNVAAVT 60 Query: 60 VLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 + R + + WDK M +E+ I +S+LG+ P G+++RI +P TEERR L K Sbjct: 61 TPDARSIAIKPWDKSMFRVIEKAIIDSDLGIMPENNGEIIRIGIPPLTEERRKQLAKQCK 120 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 +E +K+SVRN RRD +D KKS K G +ED E +QKI D IK ID K Sbjct: 121 NESETAKVSVRNARRDAIDAFKKSVKEG-LAEDAQKGGEEKLQKIHDKYIKQIDDMLAAK 179 Query: 180 KKEIMHF 186 KEIM Sbjct: 180 DKEIMTV 186 >gi|237757010|ref|ZP_04585465.1| ribosome recycling factor [Sulfurihydrogenibium yellowstonense SS-5] gi|237690828|gb|EEP59981.1| ribosome recycling factor [Sulfurihydrogenibium yellowstonense SS-5] Length = 184 Score = 209 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 69/180 (38%), Positives = 118/180 (65%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ + RM ++ K++++ +RTGR S +++ +K++ YG+ +PL Q+A ++ EP + Sbjct: 6 LKEAEKRMKGAVNKYKEELLGIRTGRASTGLVENIKIDYYGAELPLKQLATISTPEPAQI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK V +E+ + E+NLG NP EG V+R+ +P TEERR +VK+ H +AE+++ Sbjct: 66 VIQTWDKSAVKLIEKALMEANLGANPQTEGNVIRLNLPPMTEERRKEVVKMIHKFAEEAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIRRD ++++K +K G SED + +QK+TD I+ I+ E K+KEI+ Sbjct: 126 IAIRNIRRDEKENIEKLKKEG-FSEDDIKKALEKLQKLTDKYIEEINQLTEAKEKEILSI 184 >gi|187935220|ref|YP_001885459.1| ribosome recycling factor [Clostridium botulinum B str. Eklund 17B] gi|238691618|sp|B2TJ43|RRF_CLOBB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|187723373|gb|ACD24594.1| ribosome recycling factor [Clostridium botulinum B str. Eklund 17B] Length = 185 Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats. Identities = 76/180 (42%), Positives = 126/180 (70%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++N +++M T++ LK ++ T++ GR +PSMLD ++++ YGS PL+Q AN++ EPR+L Sbjct: 6 IKNAEEKMQKTVTVLKSELGTMKAGRANPSMLDKIQIDYYGSMCPLSQAANISSPEPRVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ W+K+++ +E+ I +S+LGLNP +G ++R+ +PE TEE R LVK E+SK Sbjct: 66 MITPWEKQLLKEIEKAILKSDLGLNPSNDGSIIRLVIPELTEETRKDLVKKVKKTGEESK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++R+IRRD D +K +K G SED V E+D+QK TD+ IK+ID +K+KEI+ Sbjct: 126 VAIRSIRRDANDKIKALKKDGDLSEDQVKKGEDDVQKKTDAIIKDIDKIIVDKEKEILAI 185 >gi|308183366|ref|YP_003927493.1| ribosome recycling factor [Helicobacter pylori PeCan4] gi|308065551|gb|ADO07443.1| ribosome recycling factor [Helicobacter pylori PeCan4] Length = 185 Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats. Identities = 69/179 (38%), Positives = 106/179 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 KD M +I L +D TLR+ +VS ++LD +KV+ YG+ LNQV +V L+ L Sbjct: 7 NETKDLMQKSIQALNRDFSTLRSAKVSVNILDHIKVDYYGTPTALNQVGSVMSLDATTLQ 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S W+K ++ +ER I E+N+G+NP +G+ +++ P T E+R + K A A EK+K+ Sbjct: 67 ISPWEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTTEQRKLIAKDAKAMGEKAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIR+D + +KK K + SED + IQK TD IK ID + K+ I+ Sbjct: 127 AVRNIRQDANNKIKKLEKDKEISEDESKKAQEQIQKTTDEAIKTIDESVKNKEDAILKV 185 >gi|317178450|dbj|BAJ56238.1| ribosome recycling factor [Helicobacter pylori F30] Length = 185 Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats. Identities = 69/179 (38%), Positives = 107/179 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 KD M +I L +D TLR+ +VS ++LD +KV+ YG+ LNQV +V L+ L Sbjct: 7 NETKDLMQKSIQALNRDFSTLRSAKVSVNILDHIKVDYYGTPTALNQVGSVMSLDATTLQ 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S W+K ++ +ER I E+N+G+NP +G+ +++ P T ++R + K A A EK+K+ Sbjct: 67 ISPWEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTTDQRKLIAKDAKAMGEKAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIR+D + +KK K + SED + IQKITD IK ID + K+ I+ Sbjct: 127 AVRNIRQDANNKIKKLEKDKEISEDESKKAQEQIQKITDEAIKTIDESVKNKEDAILKV 185 >gi|265765322|ref|ZP_06093597.1| ribosome recycling factor [Bacteroides sp. 2_1_16] gi|263254706|gb|EEZ26140.1| ribosome recycling factor [Bacteroides sp. 2_1_16] Length = 186 Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats. Identities = 69/180 (38%), Positives = 110/180 (61%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +++M + +L++ + +R G+ S +LD ++V++YGS VP++ VA VT + R + Sbjct: 8 IEESQEKMDMAVMYLEEALAHIRAGKASTRLLDGIRVDSYGSMVPISNVAAVTTPDARSI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK M +E+ I +S+LG+ P G+++RI +P TEERR L K A E +K Sbjct: 68 TIKPWDKSMFRVIEKAIIDSDLGIMPENNGEIIRIGIPPLTEERRKQLAKQCKAEGETAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+RN RRDG+D LKK+ K G +ED + E +QK+ D I I+ EK KEIM Sbjct: 128 VSIRNARRDGIDALKKAVKDG-LAEDEQKNAEAKLQKVHDKYIAKIEEMLAEKDKEIMTV 186 >gi|217032316|ref|ZP_03437812.1| hypothetical protein HPB128_132g14 [Helicobacter pylori B128] gi|298735720|ref|YP_003728245.1| ribosome recycling factor [Helicobacter pylori B8] gi|216945982|gb|EEC24596.1| hypothetical protein HPB128_132g14 [Helicobacter pylori B128] gi|298354909|emb|CBI65781.1| ribosome recycling factor [Helicobacter pylori B8] Length = 185 Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats. Identities = 68/179 (37%), Positives = 106/179 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 KD M ++ L +D TLR+ +VS ++LD +KV+ YG+ LNQV +V L+ L Sbjct: 7 NETKDLMQKSVQALNRDFSTLRSAKVSVNILDHIKVDYYGTPTALNQVGSVMSLDATTLQ 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S W+K ++ +ER I E+N+G+NP +G+ +++ P T E+R + K A A EK+K+ Sbjct: 67 ISPWEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTTEQRKLIAKDAKAMGEKAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN R+D + +KK K + SED + IQKITD IK ID + K+ I+ Sbjct: 127 AVRNTRQDANNKIKKLEKDKEISEDESKKAQEQIQKITDEAIKKIDESVKNKEDAILKV 185 >gi|261839975|gb|ACX99740.1| ribosome recycling factor [Helicobacter pylori 52] Length = 185 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 69/179 (38%), Positives = 107/179 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 KD M +I L +D TLR+ +VS ++LD +KV+ YG+ LNQV +V L+ L Sbjct: 7 DETKDLMQKSIQALNRDFSTLRSAKVSVNILDHIKVDYYGTPTALNQVGSVMSLDATTLQ 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S W+K ++ +ER I E+N+G+NP +G+ +++ P T ++R + K A A EK+K+ Sbjct: 67 ISPWEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTTDQRKLIAKDAKAMGEKAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIR+D + +KK K + SED + IQKITD IK ID + K+ I+ Sbjct: 127 AVRNIRQDANNKIKKLEKDKEISEDESKKAQEQIQKITDEAIKTIDESVKNKEDAILKV 185 >gi|207091619|ref|ZP_03239406.1| ribosome recycling factor [Helicobacter pylori HPKX_438_AG0C1] Length = 185 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 70/179 (39%), Positives = 107/179 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 KD M +I L +D TLR+ +VS ++LD +KV+ YG+ LNQV +V L+ L Sbjct: 7 NETKDLMQKSIQALNRDFSTLRSAKVSVNILDHIKVDYYGTPTALNQVGSVMSLDATTLQ 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S W+K M+ +ER I E+N+G+NP +G+ +++ P T E+R + K A A EK+K+ Sbjct: 67 ISPWEKNMLKEIERSIQEANIGVNPNNDGETIKLFFPPMTTEQRKLIAKDAKAMGEKAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN R+D + +KK K + SED + IQKITD +IK ID + K+ I+ Sbjct: 127 AVRNTRQDANNKVKKLEKDKEISEDESKKAQEQIQKITDESIKKIDESVKNKEDAILKV 185 >gi|303236901|ref|ZP_07323480.1| ribosome recycling factor [Prevotella disiens FB035-09AN] gi|302483069|gb|EFL46085.1| ribosome recycling factor [Prevotella disiens FB035-09AN] Length = 186 Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats. Identities = 75/180 (41%), Positives = 116/180 (64%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++RM +L + + +R GR + ++LD V+V +YGS VPLNQVA+VTV +PR + Sbjct: 8 LSEAEERMEMAAMYLDEQLQRIRAGRANVAILDGVRVNSYGSVVPLNQVASVTVPDPRTI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK+ + +E+ I +S++G+ P G+++R+ +P+ TEERR LVK ++ E++K Sbjct: 68 AIKPWDKKAIKDIEKAIMDSDVGITPDNNGEIIRLSLPQPTEERRRDLVKQSNKIGERTK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 + VRN+R D D KK+ K G SED+ E ++QKI D IK ID+ EK+KEIM Sbjct: 128 VEVRNVRSDIKDKFKKAIKDG-LSEDLEKDAEEELQKIHDKYIKKIDALLVEKEKEIMTV 186 >gi|217033577|ref|ZP_03439005.1| hypothetical protein HP9810_899g13 [Helicobacter pylori 98-10] gi|216943923|gb|EEC23357.1| hypothetical protein HP9810_899g13 [Helicobacter pylori 98-10] Length = 185 Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats. Identities = 68/179 (37%), Positives = 107/179 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 KD M +I L +D TLR+ +VS ++LD +KV+ YG+ LNQV +V L+ L Sbjct: 7 NETKDLMQKSIQALNRDFSTLRSAKVSVNILDHIKVDYYGTPTALNQVGSVMSLDATTLQ 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S W+K ++ +ER I E+N+G+NP +G+ +++ P T ++R + K A A EK+K+ Sbjct: 67 ISPWEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTTDQRKLIAKDAKAMGEKAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIR+D + +KK K + SED + IQKITD +K ID + K+ I+ Sbjct: 127 AVRNIRQDANNKIKKLEKDKEISEDESKKAQEQIQKITDEAVKTIDESVKNKEDAILKV 185 >gi|160891315|ref|ZP_02072318.1| hypothetical protein BACUNI_03764 [Bacteroides uniformis ATCC 8492] gi|317481183|ref|ZP_07940258.1| ribosome recycling factor [Bacteroides sp. 4_1_36] gi|156859536|gb|EDO52967.1| hypothetical protein BACUNI_03764 [Bacteroides uniformis ATCC 8492] gi|316902679|gb|EFV24558.1| ribosome recycling factor [Bacteroides sp. 4_1_36] Length = 186 Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats. Identities = 76/187 (40%), Positives = 106/187 (56%), Gaps = 2/187 (1%) Query: 1 MNQVID-LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVT 59 M V D L ++ M I +L + + +R G+ +LD ++V++YGS VP+N VA VT Sbjct: 1 MRDVKDILDEAQESMDMAIMYLDEALAHIRAGKADIRLLDGIRVDSYGSMVPINNVAAVT 60 Query: 60 VLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 + R + + WDK M +E+ I +S+LG+ P G+++RI +P TEERR L K Sbjct: 61 TPDARSIAIKPWDKSMFRVIEKAIIDSSLGIMPENNGEIIRIGIPPLTEERRKQLAKQCK 120 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 E +K+SVRN RRD +D LKKS K G +ED E +QKI D IK ID K Sbjct: 121 GEGETAKVSVRNARRDAIDALKKSVKDG-LAEDAQKGGEEKLQKIHDKFIKQIDDMLAAK 179 Query: 180 KKEIMHF 186 KEIM Sbjct: 180 DKEIMTV 186 >gi|303273418|ref|XP_003056070.1| ribosomal recycling factor, chloroplast precursor [Micromonas pusilla CCMP1545] gi|226462154|gb|EEH59446.1| ribosomal recycling factor, chloroplast precursor [Micromonas pusilla CCMP1545] Length = 245 Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats. Identities = 60/176 (34%), Positives = 105/176 (59%), Gaps = 3/176 (1%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ DRM ++ ++ ++ T+RTGR + ++LD ++VE YGS PL +AN+T + + ++ Sbjct: 70 QSADDRMEKSVDSIRNNLNTVRTGRANAAILDRIEVEYYGSVTPLKSLANITTPDAQTII 129 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +DK ++ VE+ I S+L L P +G +R+ +P T ERR L K+ E K+ Sbjct: 130 IQPFDKNIIDDVEKAIMSSDLDLMPGNDGNCIRLNIPPLTAERRRDLAKLVSKLGEDGKV 189 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 ++RN+RRD + + K SED + SLEN+++K+T ++D +K+ EI Sbjct: 190 ALRNVRRDTLRSIGKL---KGYSEDEIKSLENNVEKMTLKHTTDVDEVVRKKEDEI 242 >gi|313901163|ref|ZP_07834651.1| ribosome recycling factor [Clostridium sp. HGF2] gi|312954121|gb|EFR35801.1| ribosome recycling factor [Clostridium sp. HGF2] Length = 180 Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats. Identities = 77/180 (42%), Positives = 114/180 (63%), Gaps = 3/180 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++M ++ L++D+ T+RTG S+LD V+ E YGS P+NQVA+V V+E R L Sbjct: 4 LNHAEEKMKKAVAVLEEDLKTIRTGIAHASLLDHVQFEYYGSPTPINQVASVKVVEGRQL 63 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +D+ + +ER I S+ GL P +G+V+R+ VP TEERR L K AH E++K Sbjct: 64 VIKPYDRGTLKDIERAIQTSDTGLVPQSDGEVIRLNVPALTEERRKELAKSAHKMGEEAK 123 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIRRD D +K K + +ED+ + IQK+TD K+IDS + K KEIM Sbjct: 124 IAIRNIRRDANDAVK---KDKELTEDLKKDAQEKIQKLTDKIGKSIDSAVDTKAKEIMKV 180 >gi|15612242|ref|NP_223895.1| ribosome recycling factor [Helicobacter pylori J99] gi|6831645|sp|Q9ZJX1|RRF_HELPJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|4155787|gb|AAD06763.1| RIBOSOME RECYCLING FACTOR (RIBOSOME RELEASING FACTOR) (RRF) [Helicobacter pylori J99] Length = 185 Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats. Identities = 69/179 (38%), Positives = 106/179 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 KD M +I L +D TLR+ +VS ++LD +KV+ YG+ LNQV +V L+ L Sbjct: 7 NETKDLMQKSIQALNRDFSTLRSAKVSVNILDHIKVDYYGTPTALNQVGSVMSLDATTLQ 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S W+K ++ +ER I E+N+G+NP +G+ +++ P T E+R + K A A EK+K+ Sbjct: 67 ISPWEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTTEQRKLIAKDAKAMGEKAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN R+D + +KK K + SED + IQKITD IK ID + K+ I+ Sbjct: 127 AVRNTRQDANNKVKKLEKDKEISEDESKKAQEQIQKITDEAIKKIDESVKNKEDAILKV 185 >gi|167765030|ref|ZP_02437151.1| hypothetical protein BACSTE_03424 [Bacteroides stercoris ATCC 43183] gi|167697699|gb|EDS14278.1| hypothetical protein BACSTE_03424 [Bacteroides stercoris ATCC 43183] Length = 186 Score = 208 bits (531), Expect = 2e-52, Method: Composition-based stats. Identities = 74/187 (39%), Positives = 108/187 (57%), Gaps = 2/187 (1%) Query: 1 MNQVID-LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVT 59 M V D L +++M + +L++ + +R G+ +LD ++V++YGS VP+N VA VT Sbjct: 1 MKDVKDILDEAQEKMDMAVMYLEESLAHIRAGKADVRLLDGIRVDSYGSMVPINNVAAVT 60 Query: 60 VLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 + R + + WDK M +E+ I +S+LG+ P G+++RI +P TEERR L K Sbjct: 61 TPDARSIAIKPWDKSMFRIIEKAIIDSDLGIMPENNGEIIRIGIPPLTEERRKQLAKQCK 120 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 +E +K+SVRN RRD +D KKS K G +ED E +QKI D IK ID K Sbjct: 121 NESETAKVSVRNARRDAIDAFKKSVKEG-LAEDAQKGGEEKLQKIHDKYIKQIDDMLAAK 179 Query: 180 KKEIMHF 186 KEIM Sbjct: 180 DKEIMTV 186 >gi|330998184|ref|ZP_08322010.1| ribosome recycling factor [Paraprevotella xylaniphila YIT 11841] gi|329568876|gb|EGG50674.1| ribosome recycling factor [Paraprevotella xylaniphila YIT 11841] Length = 186 Score = 208 bits (531), Expect = 2e-52, Method: Composition-based stats. Identities = 70/180 (38%), Positives = 106/180 (58%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + +L + + +R G+ +LD ++V++YGS VP+N VA V + R + Sbjct: 8 LDEAQEKMDMAVMYLDEALAHIRAGKADIRLLDGIRVDSYGSMVPINNVAAVNTPDARSI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK M ++E+ I +S LG+ P G+++RI +P TEERR L K A E +K Sbjct: 68 AIKPWDKNMFRAIEKAIIDSELGIMPENNGEIIRIGIPPLTEERRKQLAKQCKAECETAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +SVRN RRD +D LKK+ K G +ED + E +QK+ D IK ID + K KEIM Sbjct: 128 VSVRNARRDAIDALKKAVKDG-MAEDEQKNSEAKLQKVHDKYIKQIDDLYAAKDKEIMTV 186 >gi|194477329|ref|YP_002049508.1| ribosome releasing factor [Paulinella chromatophora] gi|171192336|gb|ACB43298.1| ribosome releasing factor [Paulinella chromatophora] Length = 180 Score = 208 bits (531), Expect = 2e-52, Method: Composition-based stats. Identities = 58/180 (32%), Positives = 108/180 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + +++ M ++ ++ + T+RTGR +PS+LD + V+ YG+ L +A V + + + Sbjct: 1 MNDLETSMNKSVEATQRTLNTIRTGRANPSLLDKITVDYYGAETSLKSMATVFAPDSQTI 60 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + +D + + +E+ I S+LGL +G+++RI +P T++RR L K+A YAE+ K Sbjct: 61 AIQPFDIKSMGLIEKAIAISDLGLTTSNDGKIIRINIPPLTQDRRKDLCKLAAKYAEEGK 120 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RN+RRD +D +KK+ K G SED + +Q +TD +I I+ +K+ EI+ Sbjct: 121 VALRNLRRDAIDKIKKNEKDGSLSEDQSRDQQKAVQNLTDISISQIEKNLSQKEIEIIKV 180 >gi|187917999|ref|YP_001883562.1| ribosome recycling factor [Borrelia hermsii DAH] gi|238689276|sp|B2RZI6|RRF_BORHD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|119860847|gb|AAX16642.1| ribosome recycling factor [Borrelia hermsii DAH] Length = 184 Score = 208 bits (531), Expect = 2e-52, Method: Composition-based stats. Identities = 71/177 (40%), Positives = 112/177 (63%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 + ++M + L + +LRTGR+S ++ D V V+ YG PL +VAN+++ E R++V+ Sbjct: 8 LDEKMDRVLLSLDSEYKSLRTGRISSALFDKVLVDYYGEKTPLTRVANISIPEARLIVIQ 67 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 WDK +++ +E+ I S+L +NP +G VLRI VP T ERR +VK A AE+ K++ Sbjct: 68 PWDKSLLSKIEQAILSSDLSMNPSSDGSVLRIKVPVLTVERRKEIVKQAKKIAEEYKVAA 127 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RN+R++ + KK K + +ED + + +DIQ+ T+S IK ID F+ K KEIM F Sbjct: 128 RNVRQELNNKAKKQEKDSQITEDDLRRILDDIQRDTNSYIKKIDEIFDLKTKEIMEF 184 >gi|309775654|ref|ZP_07670653.1| ribosome recycling factor [Erysipelotrichaceae bacterium 3_1_53] gi|308916560|gb|EFP62301.1| ribosome recycling factor [Erysipelotrichaceae bacterium 3_1_53] Length = 180 Score = 208 bits (531), Expect = 2e-52, Method: Composition-based stats. Identities = 77/180 (42%), Positives = 111/180 (61%), Gaps = 3/180 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +++M ++ L++D+ T+RTG S+LD V+ E YGS P+NQVA+V V+E R L Sbjct: 4 LNHAEEKMKKAVTVLEEDLKTIRTGIAHASLLDHVQFEYYGSPTPINQVASVKVVEGRQL 63 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +D+ + +ER I S+ GL P +G+V+R+ VP TEERR L K AH E +K Sbjct: 64 VIKPYDRGTLKDIERAIQTSDTGLVPQSDGEVIRLNVPSLTEERRKELAKAAHKMGEDAK 123 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIRRD D +K K + +ED+ + IQK+TD K ID E K KEIM Sbjct: 124 IAIRNIRRDANDAVK---KDKELTEDLKKDAQEKIQKLTDKIGKTIDQAVENKAKEIMKV 180 >gi|194365040|ref|YP_002027650.1| ribosome recycling factor [Stenotrophomonas maltophilia R551-3] gi|238693463|sp|B4SQ19|RRF_STRM5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|194347844|gb|ACF50967.1| ribosome recycling factor [Stenotrophomonas maltophilia R551-3] Length = 184 Score = 208 bits (531), Expect = 2e-52, Method: Composition-based stats. Identities = 70/180 (38%), Positives = 106/180 (58%), Gaps = 3/180 (1%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYG-SHVPLNQVANVTVLEPRML 66 N + RM +I LK + ++RTGR +P++LD V V AYG + PLNQVA+++ + L Sbjct: 7 NNAQTRMAKSIDALKHTLTSIRTGRATPALLDRVTVNAYGNASTPLNQVASISNADAHSL 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +DK M+ +E+G+ N P G +RI +P TEERR L K E +K Sbjct: 67 LVTPFDKSMIKEIEKGL--YNAEFTPNTLGTAIRINMPPPTEERRKELAKQVQKEGEGAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIR+D + K K SED E+DIQK+TD+ IK++D +K+KE++ Sbjct: 125 IAIRNIRQDANKEIAKLDKDKAISEDEKKRGEDDIQKLTDANIKDVDKVVADKEKELLSV 184 >gi|187735811|ref|YP_001877923.1| ribosome recycling factor [Akkermansia muciniphila ATCC BAA-835] gi|238691857|sp|B2UKL9|RRF_AKKM8 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|187425863|gb|ACD05142.1| ribosome recycling factor [Akkermansia muciniphila ATCC BAA-835] Length = 188 Score = 208 bits (531), Expect = 2e-52, Method: Composition-based stats. Identities = 69/188 (36%), Positives = 110/188 (58%), Gaps = 2/188 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDL--VKVEAYGSHVPLNQVANV 58 M+ L ++ M + F K++ +RTG+ SP +++ V V +YGS + L +A + Sbjct: 1 MDAETLLLETEESMLKAVDFAKQEFSGVRTGKASPGLVENLDVHVSSYGSVMKLKGLAVI 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 + EPR++++ +D V + R I+ES L LNP+VEG+ +R+P+P TEERR LVK+ Sbjct: 61 STPEPRLILIQPFDPSTVHDIGRAINESKLNLNPLVEGRSIRLPIPALTEERRKDLVKLV 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 + AE++++ VR R+ MD KK + +ED LE IQK+TD +K ID Sbjct: 121 KSQAEEARVRVRGARKAAMDSAKKLKAENIVTEDGQRDLETQIQKLTDKYVKEIDELVAV 180 Query: 179 KKKEIMHF 186 K+K+IM Sbjct: 181 KEKDIMTI 188 >gi|332291336|ref|YP_004429945.1| ribosome recycling factor [Krokinobacter diaphorus 4H-3-7-5] gi|332169422|gb|AEE18677.1| ribosome recycling factor [Krokinobacter diaphorus 4H-3-7-5] Length = 185 Score = 208 bits (530), Expect = 3e-52, Method: Composition-based stats. Identities = 79/188 (42%), Positives = 111/188 (59%), Gaps = 5/188 (2%) Query: 1 MNQ--VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 MN+ + K+ M D I L K ++T+R G+ SP+ML + V YGS PL+QVANV Sbjct: 1 MNEDLKFIIDTAKEAMDDAIVHLAKRLLTIRAGKASPAMLQGLMVNYYGSPTPLSQVANV 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 + R + V W+K ++ +E+ I +NLG NP+ G+ + I VP TEERR LVK A Sbjct: 61 NTPDGRTITVQPWEKSLMQEIEKAIINANLGFNPMNNGENIIINVPPLTEERRKDLVKQA 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 A AE SK+ VRN R++ + +KK AS+D A+ E DIQK+TD IK I+ + Sbjct: 121 RAEAEDSKVGVRNDRKNANNDIKKV---DDASDDEKANAEVDIQKLTDIHIKKIEDVLSK 177 Query: 179 KKKEIMHF 186 K+ EIM Sbjct: 178 KEAEIMTV 185 >gi|308185004|ref|YP_003929137.1| ribosome recycling factor [Helicobacter pylori SJM180] gi|308060924|gb|ADO02820.1| ribosome recycling factor [Helicobacter pylori SJM180] Length = 185 Score = 208 bits (530), Expect = 3e-52, Method: Composition-based stats. Identities = 68/179 (37%), Positives = 106/179 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 KD M +I L +D TLR+ +VS ++LD +KV+ YG+ LNQV +V L+ + Sbjct: 7 NETKDLMQKSIQALNRDFSTLRSAKVSVNILDHIKVDYYGTPTALNQVGSVMSLDATTIQ 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S W+K ++ +ER I E+N+G+NP +G+ +++ P T E+R + K A A EK+K+ Sbjct: 67 ISPWEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTSEQRKLIAKDAKAMGEKAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRN R+D + +KK K + SED + IQKITD IK ID + K+ I+ Sbjct: 127 AVRNTRQDANNKVKKLEKDKEISEDESKKAQEQIQKITDEAIKKIDESVKNKEDAILKV 185 >gi|289522434|ref|ZP_06439288.1| ribosome recycling factor [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504270|gb|EFD25434.1| ribosome recycling factor [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 188 Score = 208 bits (530), Expect = 3e-52, Method: Composition-based stats. Identities = 62/169 (36%), Positives = 115/169 (68%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+++++ M + K +M +R GR P++++ +KV+ YG+ P+ Q+ +++ EPR + Sbjct: 9 LKDMRESMKKAVEHFKAEMTGIRAGRAHPALVENIKVDYYGAQTPIKQMGTISIPEPRQI 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S+WDK + +VE+ I S LG+ P V+G+ +RI +PE T+ERR+ L ++ YAE+++ Sbjct: 69 LISLWDKTAIKAVEKAIQASQLGVMPQVDGENIRITLPELTKERRVELSRLVKKYAEEAR 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSF 175 +++RNIRRD +D LKK K + SED + L+++IQ+IT+ I+ ++ Sbjct: 129 VAIRNIRRDVLDELKKQEKDSEISEDELRRLQDEIQEITNEYIEMVNKA 177 >gi|323344896|ref|ZP_08085120.1| ribosome recycling factor [Prevotella oralis ATCC 33269] gi|323094166|gb|EFZ36743.1| ribosome recycling factor [Prevotella oralis ATCC 33269] Length = 186 Score = 208 bits (530), Expect = 3e-52, Method: Composition-based stats. Identities = 76/180 (42%), Positives = 115/180 (63%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + ++RM +L + + +R GR + ++LD V+V +YGS VPLNQVANV+V + R + Sbjct: 8 LNDAEERMQMASMYLDESLSRIRAGRANVAILDSVRVSSYGSMVPLNQVANVSVPDARTI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK+ + +E+GI +S++G+ P G+++R+ +P+ TEERR LVK + EK K Sbjct: 68 AIRPWDKKAIKDIEKGIMDSDVGITPENNGEIIRLTIPQPTEERRKELVKQCNKIGEKVK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 + VRN+R + + LKK+ K G SED E+ +QKI D IKNID+ EK KEIM Sbjct: 128 VEVRNVRSEIKEKLKKAIKEG-LSEDNEKDAEDSLQKIHDKYIKNIDALLAEKTKEIMTV 186 >gi|288803716|ref|ZP_06409145.1| ribosome recycling factor [Prevotella melaninogenica D18] gi|302345756|ref|YP_003814109.1| ribosome recycling factor [Prevotella melaninogenica ATCC 25845] gi|288333805|gb|EFC72251.1| ribosome recycling factor [Prevotella melaninogenica D18] gi|302149258|gb|ADK95520.1| ribosome recycling factor [Prevotella melaninogenica ATCC 25845] Length = 186 Score = 208 bits (530), Expect = 3e-52, Method: Composition-based stats. Identities = 72/180 (40%), Positives = 114/180 (63%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +RM +L ++ +R GR + ++LD V+VE+YGS VPLNQVA+V V + R + Sbjct: 8 LNDASERMEMATMYLGDELQRIRAGRANVAILDGVRVESYGSKVPLNQVASVMVPDARTI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK+ + +E+ I +S++G+ P G+++R+ +P+ TEERR LVK + E++K Sbjct: 68 AIKPWDKKAIKDIEKAIMDSDVGITPENNGELIRLNLPQPTEERRRDLVKQCNKIGERTK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 + +RN+R D + LKK+ K G SED E +QKI D IK +D+ E+K+KEIM Sbjct: 128 VEIRNVRSDIKEKLKKAIKDG-LSEDNEKDAEESLQKIHDKFIKQVDTLLEDKQKEIMTV 186 >gi|160871855|ref|ZP_02061987.1| ribosome recycling factor [Rickettsiella grylli] gi|159120654|gb|EDP45992.1| ribosome recycling factor [Rickettsiella grylli] Length = 186 Score = 208 bits (530), Expect = 3e-52, Method: Composition-based stats. Identities = 67/178 (37%), Positives = 108/178 (60%), Gaps = 1/178 (0%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSH-VPLNQVANVTVLEPRMLVV 68 + M + LK ++ LRTGR PS+L+ ++V YG VPLN VA++TV + R L+V Sbjct: 9 TEQGMQKALEALKANLAKLRTGRAHPSLLEQLRVPQYGGKEVPLNHVASITVADARTLLV 68 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 + W+K ++ +E+ I +S+LGLNP+ G V+R+P+ TEERR + K+ AE +++S Sbjct: 69 TPWEKSLIPLIEKTILQSHLGLNPLTAGNVIRVPLALLTEERRRDMSKLVKKEAEDARVS 128 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +RN R+D LK K +ED + IQK+TD +I ++ + K++E+MH Sbjct: 129 IRNYRQDANHQLKNLVKKKLITEDEERRAKEMIQKMTDRSIVEVEKIAKVKEEELMHI 186 >gi|317177998|dbj|BAJ55787.1| ribosome recycling factor [Helicobacter pylori F16] Length = 185 Score = 208 bits (530), Expect = 3e-52, Method: Composition-based stats. Identities = 68/179 (37%), Positives = 107/179 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 KD M +I L +D TLR+ +VS ++LD +KV+ YG+ LNQV ++ L+ L Sbjct: 7 NETKDLMQKSIQALNRDFSTLRSAKVSVNILDHIKVDYYGTPTALNQVGSMMSLDATTLQ 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 +S W+K ++ +ER I E+N+G+NP +G+ +++ P T ++R + K A A EK+K+ Sbjct: 67 ISPWEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTTDQRKLIAKDAKAMGEKAKV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIR+D + +KK K + SED + IQKITD IK ID + K+ I+ Sbjct: 127 AVRNIRQDANNKIKKLEKDKEISEDESKKAQEQIQKITDEAIKTIDESVKNKEDAILKV 185 >gi|256371432|ref|YP_003109256.1| ribosome recycling factor [Acidimicrobium ferrooxidans DSM 10331] gi|256008016|gb|ACU53583.1| ribosome recycling factor [Acidimicrobium ferrooxidans DSM 10331] Length = 190 Score = 208 bits (530), Expect = 3e-52, Method: Composition-based stats. Identities = 60/181 (33%), Positives = 108/181 (59%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 +L +DRM + +++ T+RTGR ++LD + VE YG VPL Q+A+VT +P Sbjct: 10 ELAAFEDRMAKAVRHTEEEFATVRTGRAQAALLDGIVVEYYGERVPLRQLASVTTPDPHS 69 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 L+++ +D+ + ++ER I +S+LG+NP +G V+RI + TEERR LVKV AE+ Sbjct: 70 LLIAPYDRNAMGAMERAIRDSDLGVNPTNDGSVIRIAIAPLTEERRRELVKVVRKRAEEG 129 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++++R +RR H + ++ G + D +A +E + ++T + +D E K+ +++ Sbjct: 130 RVAIRGVRRQAKQHFESLQRQGSLTTDDLADIERSLDRLTARFVGELDRALEVKEHDLLE 189 Query: 186 F 186 Sbjct: 190 V 190 >gi|224025759|ref|ZP_03644125.1| hypothetical protein BACCOPRO_02500 [Bacteroides coprophilus DSM 18228] gi|224018995|gb|EEF76993.1| hypothetical protein BACCOPRO_02500 [Bacteroides coprophilus DSM 18228] Length = 186 Score = 207 bits (529), Expect = 4e-52, Method: Composition-based stats. Identities = 70/180 (38%), Positives = 103/180 (57%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + +++M I +L + + +R G+ +LD +KV++YGS VP+N VA VT + R + Sbjct: 8 ISAAEEKMDMAIMYLDESLAHIRAGKADVRLLDGIKVDSYGSMVPINNVAAVTTPDARSI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK M +E+ I +S LG+ P G+++R+ +P TEERR L K E +K Sbjct: 68 AIKPWDKSMFRVIEKAIIDSELGIMPENNGEIIRLGIPPLTEERRKQLAKQCKGEGETAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +SVRN RRD +D LKK+ K G ED + E +QK+ D IK ID K KEIM Sbjct: 128 VSVRNARRDAIDALKKAVKDG-MPEDEQKNSEAKLQKVHDKYIKQIDDMLAAKDKEIMTV 186 >gi|312959395|ref|ZP_07773912.1| Ribosome-recycling factor [Pseudomonas fluorescens WH6] gi|311286112|gb|EFQ64676.1| Ribosome-recycling factor [Pseudomonas fluorescens WH6] Length = 185 Score = 207 bits (529), Expect = 4e-52, Method: Composition-based stats. Identities = 68/179 (37%), Positives = 101/179 (56%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM ++ L +RTG+ PS+L V V YG+ PL+ VANVTV + R L Sbjct: 7 KDAQARMQKSLESLSHAFGQIRTGKAHPSILGSVMVPYYGTDTPLSGVANVTVKDSRTLQ 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +++ M+A+V++ I + L LNP G++L I +P TEE R K A + AE +++ Sbjct: 67 VVAFERNMLAAVDKAIQSAGLNLNPTNLGELLLISMPALTEETRKGFTKQARSAAEDARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD + LKK K + SED DI K+T I EEK+K++M Sbjct: 127 AVRNIRRDALGDLKKLVKDKEISEDEERRAVADIDKLTKDAEAQITKATEEKEKDLMAV 185 >gi|283769070|ref|ZP_06341976.1| ribosome recycling factor [Bulleidia extructa W1219] gi|283104427|gb|EFC05804.1| ribosome recycling factor [Bulleidia extructa W1219] Length = 182 Score = 207 bits (529), Expect = 5e-52, Method: Composition-based stats. Identities = 65/180 (36%), Positives = 108/180 (60%), Gaps = 3/180 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + + +M + L+ ++ T+RTG + ++D V+ + YG+ PLNQ+A ++V E R + Sbjct: 6 IDSCSMKMDKVMDHLQSELNTVRTGMANAKLMDRVEADYYGTPTPLNQIAGISVSEGRTI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +D + +ER +E+NLG+ P +G V+R+ VP+ T E R + K AE+SK Sbjct: 66 VIKPYDPSSLKEIERACNEANLGMAPQNDGTVIRLTVPQLTGETRKEMSKKVGQIAEESK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I +RNIRRD M+ +K K + EDM +EN+IQK+TD +K ID + K+ E++ Sbjct: 126 IQIRNIRRDAMNVVK---KDKEMDEDMQKDMENEIQKLTDKYVKKIDEQAKAKEAEVLKV 182 >gi|154250177|ref|YP_001411002.1| ribosome recycling factor [Fervidobacterium nodosum Rt17-B1] gi|171769433|sp|A7HN62|RRF_FERNB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|154154113|gb|ABS61345.1| ribosome recycling factor [Fervidobacterium nodosum Rt17-B1] Length = 184 Score = 207 bits (529), Expect = 5e-52, Method: Composition-based stats. Identities = 70/180 (38%), Positives = 115/180 (63%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +++M ++ + +++ LRTGR +P++L+ +K++ YG P+ QVA VT E R L Sbjct: 6 IKTTEEKMKKSVEKIAEELKHLRTGRATPAVLEEIKIDYYGVPTPVLQVAQVTTEE-RQL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ W++ ++ +E+ I S+LGL P+ +G V+RI P T E+R VK A E+ K Sbjct: 65 VIKPWERNLLNVIEKAILASDLGLTPVNDGTVVRINFPTPTTEQRQKWVKKAKEIVEEGK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD + +K +K+G+ SED LE +IQ +TD + +D FE+K+KEIM F Sbjct: 125 VAVRNIRRDILKDIKDKKKAGEISEDDEKRLEKEIQNLTDKYVAELDKLFEKKEKEIMEF 184 >gi|229588806|ref|YP_002870925.1| ribosome recycling factor [Pseudomonas fluorescens SBW25] gi|259494551|sp|C3K5Z8|RRF_PSEFS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|229360672|emb|CAY47530.1| ribosome recycling factor [Pseudomonas fluorescens SBW25] Length = 185 Score = 207 bits (529), Expect = 5e-52, Method: Composition-based stats. Identities = 66/179 (36%), Positives = 100/179 (55%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM ++ L +RTG+ PS+L V V YGS P++ VAN+TV + R L Sbjct: 7 KDAQARMQKSLESLSHAFGQIRTGKAHPSILGSVMVPYYGSDTPISSVANITVKDSRTLQ 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +++ M+ +V++ I + L LNP G++L I +P TEE R K A + AE +++ Sbjct: 67 VVAFERNMLGAVDKAIQSAGLNLNPTNLGELLLISMPALTEETRKGFTKQARSAAEDARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD + LKK K + SED DI K+T I EEK+K++M Sbjct: 127 AVRNIRRDALGDLKKLVKDKEISEDEERRATADIDKLTKDAEAQITKATEEKEKDLMAV 185 >gi|78186236|ref|YP_374279.1| ribosome recycling factor [Chlorobium luteolum DSM 273] gi|123583477|sp|Q3B5Z5|RRF_PELLD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|78166138|gb|ABB23236.1| ribosome recycling factor [Chlorobium luteolum DSM 273] Length = 186 Score = 207 bits (528), Expect = 5e-52, Method: Composition-based stats. Identities = 72/179 (40%), Positives = 106/179 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q + +M I + ++ ++RTG+ + ++LD VKVEAYG +PL QV NV V + L+ Sbjct: 8 QKSEQKMKKAIEAFQHEIASIRTGKATTALLDRVKVEAYGQTMPLRQVGNVGVSDIHTLL 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V VWDK MVA+ E+ I ++NLGLNP EGQ +R+ +P TEERR VK+ + E SK+ Sbjct: 68 VQVWDKSMVAATEKAIRDANLGLNPAAEGQSIRVSIPPLTEERRKEFVKLTRKFGEDSKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RN RRD + ++K K SED + D + K ++ +K+KEIM Sbjct: 128 SLRNHRRDMIQEIEKLEKEKAISEDDRNRGKKDADDLLHRFEKQVNELIAQKEKEIMEV 186 >gi|203284046|ref|YP_002221786.1| ribosome releasing factor [Borrelia duttonii Ly] gi|203287586|ref|YP_002222601.1| ribosome releasing factor [Borrelia recurrentis A1] gi|226749923|sp|B5RLJ5|RRF_BORDL RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226749924|sp|B5RQU6|RRF_BORRA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|201083489|gb|ACH93080.1| ribosome releasing factor [Borrelia duttonii Ly] gi|201084806|gb|ACH94380.1| ribosome releasing factor [Borrelia recurrentis A1] Length = 184 Score = 207 bits (528), Expect = 5e-52, Method: Composition-based stats. Identities = 72/177 (40%), Positives = 110/177 (62%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 + ++MG + L+ + +LRTGRV+ ++ D V V+ YG PL +VAN++V E R++V+ Sbjct: 8 LDEKMGRVVLSLESEYKSLRTGRVNSALFDKVFVDYYGEKTPLTRVANISVPEARLIVIQ 67 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 WD+ +++ +E+ I S+L +NP +G VLRI VP T ERR +VK A AE KI+ Sbjct: 68 PWDRSLLSKIEQAILNSDLSMNPSSDGSVLRIKVPVLTIERRKEIVKQAKKIAEDHKIAT 127 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RNIR + + KK K + +ED + + +DIQ+ T+ IK ID F+ K KEIM Sbjct: 128 RNIRHELNNKAKKQEKDSQITEDDLRRILDDIQRDTNFYIKKIDGIFDLKAKEIMEV 184 >gi|313204948|ref|YP_004043605.1| ribosome recycling factor [Paludibacter propionicigenes WB4] gi|312444264|gb|ADQ80620.1| ribosome recycling factor [Paludibacter propionicigenes WB4] Length = 186 Score = 207 bits (528), Expect = 5e-52, Method: Composition-based stats. Identities = 70/180 (38%), Positives = 109/180 (60%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ +D M T+ FL + + +R G+ +P +LD V+VE YG VP++ VA VT + + + Sbjct: 8 LKQAEDSMEATLLFLDESLAHIRAGKANPRILDGVRVEYYGQIVPISGVATVTTPDAKTI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + W+K ++ +E+ + S++G+ P+ G+ +R+ +P TE+RR L K + A E +K Sbjct: 68 TIQPWEKALIPIIEKALLNSDIGITPMNNGETIRLGIPPLTEDRRRQLAKQSKAECEDAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ISVRN RRD ++HLKK K G EDM E +QKI D IK I+ + K+KEIM Sbjct: 128 ISVRNARRDAIEHLKKMIKEG-LPEDMEKDAEVSVQKIHDKYIKRIEDQYLAKEKEIMTV 186 >gi|39932075|sp|Q7UTH0|RRF_RHOBA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor Length = 186 Score = 207 bits (528), Expect = 5e-52, Method: Composition-based stats. Identities = 57/179 (31%), Positives = 106/179 (59%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + ++RM +S L+ ++ +RTGR +P ++D +KVE YGS PL Q+A++ EP+ + Sbjct: 7 LMDAEERMDKAVSVLQNNLSGIRTGRANPGLVDSIKVEVYGSLTPLKQLASIGTPEPQQI 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D + +E+ I +LGLNP +G+V+R+ VP + E R +V AE++K Sbjct: 67 LIRPYDATTIKDIEKAIVAGDLGLNPQNDGRVIRLNVPPLSGEVRKKMVSRIKELAEEAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +S+RNIRRD + + K + +ED ++ +Q++T N++ + ++ E+M Sbjct: 127 VSIRNIRRDANKAAETAEKDKEMTEDDRDKTKDQVQELTKKAETNVNESAKAREAEVME 185 >gi|332880823|ref|ZP_08448494.1| ribosome recycling factor [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681206|gb|EGJ54132.1| ribosome recycling factor [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 186 Score = 207 bits (528), Expect = 6e-52, Method: Composition-based stats. Identities = 70/180 (38%), Positives = 105/180 (58%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + +L + + +R G+ +LD ++V++YGS VP+N VA V + R + Sbjct: 8 LDEAQEKMDMAVMYLDEALAHIRAGKADIRLLDGIRVDSYGSMVPINNVAAVNTPDARSI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK M +E+ I +S LG+ P G+++RI +P TEERR L K A E +K Sbjct: 68 AIKPWDKNMFRVIEKAIIDSELGIMPENNGEIIRIGIPPLTEERRKQLAKQCKAECETAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +SVRN RRD +D LKK+ K G +ED + E +QK+ D IK ID + K KEIM Sbjct: 128 VSVRNARRDAIDALKKAVKDG-MAEDEQKNSEAKLQKVHDKYIKQIDDLYAAKDKEIMTV 186 >gi|313683630|ref|YP_004061368.1| ribosome recycling factor [Sulfuricurvum kujiense DSM 16994] gi|313156490|gb|ADR35168.1| ribosome recycling factor [Sulfuricurvum kujiense DSM 16994] Length = 185 Score = 207 bits (528), Expect = 6e-52, Method: Composition-based stats. Identities = 59/177 (33%), Positives = 100/177 (56%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 +++M + + + TLRTGRV+ +LD V+VE YGS VPL+Q A+V + + +S Sbjct: 9 CEEKMQGSCDHMIHNFRTLRTGRVTTKILDNVRVENYGSMVPLDQAASVLATDATTITIS 68 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 WDK M++ +E+ I ++++G+NP G +++ P T E+R K A AE +K+ V Sbjct: 69 PWDKSMLSVIEKAIQKADIGVNPNNNGTDIKLFFPPMTVEQRQETAKKAKGMAEDAKVGV 128 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RN R+ D +K K + D ++ +QKITD I I+ + K+++I+ Sbjct: 129 RNDRKKANDKIKVLEKDKLITADESKGAQDKVQKITDKYISKIEDLLKAKEQDILTV 185 >gi|288924743|ref|ZP_06418680.1| ribosome recycling factor [Prevotella buccae D17] gi|315607757|ref|ZP_07882750.1| ribosome recycling factor [Prevotella buccae ATCC 33574] gi|288338530|gb|EFC76879.1| ribosome recycling factor [Prevotella buccae D17] gi|315250226|gb|EFU30222.1| ribosome recycling factor [Prevotella buccae ATCC 33574] Length = 186 Score = 207 bits (528), Expect = 6e-52, Method: Composition-based stats. Identities = 71/180 (39%), Positives = 113/180 (62%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++RM +L + + +R GR + ++LD +KVE+YG VPLNQVAN++ +PR + Sbjct: 8 LNEAQERMEMAAMYLDEQLARIRAGRANVAILDGIKVESYGMKVPLNQVANISTPDPRTI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WD++ + +E+ I +S++G+ P G+++R+ +P+ TEERR LVK + AEK+K Sbjct: 68 AIKPWDRKAIRDIEKAIMDSDVGITPENNGEIIRLGIPQPTEERRKELVKQCNKIAEKTK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I VRN+R + + KK+ K G SED+ E+++QKI D IK +D K KEIM Sbjct: 128 IEVRNVRGELKEKFKKAIKDG-LSEDLEKDAEDELQKIHDKFIKKLDDLIAAKTKEIMTV 186 >gi|119952923|ref|YP_945132.1| ribosome recycling factor [Borrelia turicatae 91E135] gi|254809494|sp|A1QYS0|RRF_BORT9 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|119861694|gb|AAX17462.1| ribosome recycling factor [Borrelia turicatae 91E135] Length = 184 Score = 207 bits (527), Expect = 6e-52, Method: Composition-based stats. Identities = 71/177 (40%), Positives = 111/177 (62%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 + ++M + L+ + +LRTGR++ S+ D V V+ YG PL +VANV++ E R++V+ Sbjct: 8 LDEKMSKVLLSLESEYKSLRTGRINSSLFDKVLVDYYGEKTPLTRVANVSIPEARLIVIQ 67 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 WDK +++ +E+ I S+L +NP +G VLRI VP T ERR +VK A AE+ K++ Sbjct: 68 PWDKSLLSKIEQAILSSDLSMNPSSDGAVLRIKVPVLTVERRKEIVKQAKKIAEEYKVAA 127 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RN+R++ KK K + +ED + + +DIQ+ T+S IK ID F+ K KEIM Sbjct: 128 RNVRQELNSKAKKQEKDSQITEDDLRRILDDIQRDTNSYIKKIDEIFDLKTKEIMEV 184 >gi|227500094|ref|ZP_03930165.1| ribosome recycling factor [Anaerococcus tetradius ATCC 35098] gi|227217809|gb|EEI83106.1| ribosome recycling factor [Anaerococcus tetradius ATCC 35098] Length = 186 Score = 207 bits (527), Expect = 6e-52, Method: Composition-based stats. Identities = 70/179 (39%), Positives = 111/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + D M + +K + T++ GR + ++LD + YG+ P+NQ A V++ E R+LV Sbjct: 8 KQATDEMNKAVESFEKRISTIKAGRATEAILDGITFSYYGTETPINQAATVSIPEARLLV 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + WDK + +E+ I +SN+G+ P +G+++R+P P+ TEERR K YAE SKI Sbjct: 68 IKPWDKSNIGPIEKAILKSNVGITPQNDGEIIRLPFPQLTEERRKQYTKEVDTYAEDSKI 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +RN RR+ M+ +KKS KSG +ED +LE++IQKITD I+ ++ +K KE+M Sbjct: 128 IIRNKRREAMEEVKKSEKSGDITEDDRYTLEDEIQKITDKRIEELEKIAAKKNKELMSV 186 >gi|298373170|ref|ZP_06983160.1| ribosome recycling factor [Bacteroidetes oral taxon 274 str. F0058] gi|298276074|gb|EFI17625.1| ribosome recycling factor [Bacteroidetes oral taxon 274 str. F0058] Length = 188 Score = 207 bits (527), Expect = 6e-52, Method: Composition-based stats. Identities = 65/180 (36%), Positives = 107/180 (59%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + M T+SFL + +R G+ + +LD +KV+ YG+ PL+ VA +T + + + Sbjct: 10 INTAAADMEATVSFLDDALAHIRAGKANVKILDGIKVDYYGTLTPLSSVATITTPDAKTI 69 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + W+K ++ +E+ I S++G+ P G+V+R+ +P TEERR LVK A + E++K Sbjct: 70 SIQPWEKNLIPVIEKAILASDVGITPANNGEVVRLSIPPLTEERRKQLVKQAGSAVEEAK 129 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 IS+RN RR+ ++ LKK K+G ED+ E ++QK D IK ++ F K+KEIM Sbjct: 130 ISIRNARREAIERLKKEIKNG-MPEDVEKDAEAEVQKQHDKHIKRLEELFAAKEKEIMTI 188 >gi|83816107|ref|YP_444188.1| ribosome recycling factor [Salinibacter ruber DSM 13855] gi|294505846|ref|YP_003569904.1| Ribosome recycling factor [Salinibacter ruber M8] gi|123529892|sp|Q2S6J3|RRF_SALRD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|83757501|gb|ABC45614.1| ribosome recycling factor [Salinibacter ruber DSM 13855] gi|294342174|emb|CBH22952.1| Ribosome recycling factor [Salinibacter ruber M8] Length = 189 Score = 207 bits (527), Expect = 7e-52, Method: Composition-based stats. Identities = 71/180 (39%), Positives = 121/180 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + M +++S+++ ++ T+R GR SP+ML+ V VE YGS PL QVA+V+ +P ++ Sbjct: 10 LDEADEEMEESVSYMRSELRTIRAGRASPAMLENVTVEYYGSQTPLEQVASVSAPQPDLI 69 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VV +D+ + ++ERGI +++LGLNP +G+ +RIP+P +EERR LV+ + AE++K Sbjct: 70 VVQPFDRNAIENIERGIMKADLGLNPNNDGEKIRIPIPPLSEERRKELVETSRERAEETK 129 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 IS+RNIRRD + ++ ++ SED++ E D+Q ITD+ + ++ E+K ++IM Sbjct: 130 ISIRNIRRDAKNEIQNVVEAENFSEDVLYGAEEDLQDITDAHTETVEGLLEQKTEQIMDV 189 >gi|294672862|ref|YP_003573478.1| ribosome recycling factor [Prevotella ruminicola 23] gi|294472820|gb|ADE82209.1| ribosome recycling factor [Prevotella ruminicola 23] Length = 186 Score = 207 bits (527), Expect = 7e-52, Method: Composition-based stats. Identities = 75/180 (41%), Positives = 116/180 (64%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++RM +L++++ +R GR + ++LD V+VE YGS VPLNQVANV+V +PR + Sbjct: 8 LNKSEERMEMAAMYLEEELNRIRAGRANVAILDAVRVEVYGSKVPLNQVANVSVPDPRTI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WD++ + ++E+ I +S++G+ P G+++R+ +P+ TEERR L K + AEK+K Sbjct: 68 AIKPWDRKEIRNIEKAIMDSDVGITPENNGEIIRLNIPQPTEERRRDLTKQCNKIAEKAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 + VRN+R D D LKK+ K G SED+ E ++QK+ D IK ID K KEIM Sbjct: 128 VEVRNVRGDIKDKLKKAIKDG-LSEDLEKDAEAELQKLHDKFIKKIDELITAKNKEIMTV 186 >gi|261885413|ref|ZP_06009452.1| ribosome recycling factor [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 185 Score = 207 bits (527), Expect = 7e-52, Method: Composition-based stats. Identities = 61/172 (35%), Positives = 100/172 (58%) Query: 15 GDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKE 74 + K+D TLRTG+V+ +++D + V+ YGS LNQVA V + + +S W+K Sbjct: 14 DKALEVXKRDXTTLRTGKVNINIVDHINVDYYGSPTALNQVATVLATDASTISISPWEKT 73 Query: 75 MVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRR 134 M+ ++ I +N+G+NP +G +++ P T E R K A + EK+K+++RNIR+ Sbjct: 74 MLKAISSAIQAANIGVNPNNDGDSVKLFFPPMTTEDRQKNAKEARSMGEKAKVAIRNIRK 133 Query: 135 DGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 D D +KK K SED + +++QKITDS I ID ++K+ E++ Sbjct: 134 DANDDIKKIEKDKSVSEDEIKKGYDEVQKITDSYISKIDQLVKDKEAELLKV 185 >gi|327541582|gb|EGF28113.1| ribosome recycling factor [Rhodopirellula baltica WH47] Length = 179 Score = 207 bits (527), Expect = 7e-52, Method: Composition-based stats. Identities = 56/177 (31%), Positives = 105/177 (59%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 + ++RM +S L+ ++ +RTGR +P ++D +KVE YGS PL Q+A++ EP+ +++ Sbjct: 2 DAEERMDKAVSVLQNNLSGIRTGRANPGLVDSIKVEVYGSLTPLKQLASIGTPEPQQILI 61 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 +D + +E+ I +LGLNP +G+V+R+ VP + E R +V AE++K+S Sbjct: 62 RPYDATTIKDIEKAIVAGDLGLNPQNDGRVIRLNVPPLSGEVRKKMVSRIKELAEEAKVS 121 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +RNIRRD + + K + +ED ++ +Q++T N++ + ++ E+M Sbjct: 122 IRNIRRDANKAAETAEKDKEMTEDDRDKTKDQVQELTKKAETNVNESAKAREAEVME 178 >gi|78778261|ref|YP_394576.1| ribosome recycling factor [Sulfurimonas denitrificans DSM 1251] gi|123549529|sp|Q30NU0|RRF_SULDN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|78498801|gb|ABB45341.1| ribosome recycling factor [Sulfurimonas denitrificans DSM 1251] Length = 185 Score = 207 bits (527), Expect = 8e-52, Method: Composition-based stats. Identities = 59/186 (31%), Positives = 111/186 (59%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ + + +M +++ + +D TLRTG+V+ S+LD VK++ YG+ L+QV ++ V Sbjct: 2 LNELFN--ECETKMKSSVNHMLRDFKTLRTGKVTTSVLDNVKIDYYGTLTALDQVGSILV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + ++++ W+K ++ ++ I ++N+G P +G +++ P T E+R VK Sbjct: 60 ADATTIIINPWEKNLLNIIDSAISKANIGATPNNDGSQIKLFFPAMTVEQRQESVKQMKG 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E +K++VRN R++ D +KKS K + + D S +++IQKITD I IDS + K+ Sbjct: 120 MGEHAKVAVRNDRKNANDKIKKSEKDKEITADESKSAQDNIQKITDKYISEIDSILKTKE 179 Query: 181 KEIMHF 186 EI+ Sbjct: 180 AEILKV 185 >gi|262198484|ref|YP_003269693.1| ribosome recycling factor [Haliangium ochraceum DSM 14365] gi|262081831|gb|ACY17800.1| ribosome recycling factor [Haliangium ochraceum DSM 14365] Length = 185 Score = 207 bits (527), Expect = 8e-52, Method: Composition-based stats. Identities = 68/180 (37%), Positives = 110/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + K M I ++++ +RTGR + S+LD VKV+ YGS PL+QVA++ V E R++ Sbjct: 6 LSDTKSGMEKAIEAFERELAKVRTGRANLSLLDGVKVDYYGSPTPLSQVASLNVAEARLM 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V WDK M+ +++ I ++LG+NPI + +++R+P+P T+ERR L K AE ++ Sbjct: 66 TVKPWDKNMIPLIDKAIRAADLGINPISDAELIRLPIPALTKERRNDLAKQTKKMAEDAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I+VR RRDG D L+ + K + SED + IQ++TD + ID K+++I+ Sbjct: 126 IAVRAARRDGNDMLRAAEKEKEVSEDESKQGQKQIQELTDEYVAKIDKLAAAKEQDILTI 185 >gi|260912507|ref|ZP_05919042.1| ribosome recycling factor [Prevotella sp. oral taxon 472 str. F0295] gi|260633386|gb|EEX51541.1| ribosome recycling factor [Prevotella sp. oral taxon 472 str. F0295] Length = 186 Score = 206 bits (526), Expect = 8e-52, Method: Composition-based stats. Identities = 75/180 (41%), Positives = 113/180 (62%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 LQ+ +DRM +L++ + +R GR + ++LD V+VE+YG VPLNQVANV+ + R + Sbjct: 8 LQDAQDRMEMAAMYLEEQLSRVRAGRANVAILDGVRVESYGMTVPLNQVANVSAPDARTI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + +DK+ + +E+ I +S++G+ P G+V+R+ +P+ TEERR L K + EK+K Sbjct: 68 AIKPFDKKAIRDIEKAIMDSDVGITPENNGEVIRLGIPQPTEERRRELAKQCNKIGEKTK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I VRN+R + D LKK+ K G SED E+ +QK+ D IK ID E K KEIM Sbjct: 128 IEVRNVRAEIKDKLKKAIKDG-LSEDNEKDAEDKLQKLHDKFIKKIDELLEAKNKEIMTV 186 >gi|319901066|ref|YP_004160794.1| ribosome recycling factor [Bacteroides helcogenes P 36-108] gi|319416097|gb|ADV43208.1| ribosome recycling factor [Bacteroides helcogenes P 36-108] Length = 186 Score = 206 bits (526), Expect = 9e-52, Method: Composition-based stats. Identities = 74/187 (39%), Positives = 107/187 (57%), Gaps = 2/187 (1%) Query: 1 MNQVID-LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVT 59 M V D L K+ M + +L++ + +R G+ +LD ++V++YGS VP+N VA VT Sbjct: 1 MKDVKDILDEAKESMDMAVMYLEEALAHIRAGKADIRLLDGIRVDSYGSMVPINNVAAVT 60 Query: 60 VLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 + R + + WDK M +E+ I +S+LG+ P G+++RI +P TEERR L K Sbjct: 61 TPDARSITIKPWDKGMFRIIEKAIIDSSLGIMPENNGEIIRIGIPPLTEERRKQLAKQCK 120 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 E +K+SVRN RRD +D LKK+ K G +ED E +QKI D IK I+ K Sbjct: 121 GEGETAKVSVRNARRDAIDGLKKAVKDG-LAEDAQKGGEEKLQKIHDKYIKQIEDMLAAK 179 Query: 180 KKEIMHF 186 KEIM Sbjct: 180 DKEIMTV 186 >gi|255536967|ref|XP_002509550.1| ribosome recycling factor, putative [Ricinus communis] gi|223549449|gb|EEF50937.1| ribosome recycling factor, putative [Ricinus communis] Length = 262 Score = 206 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 64/171 (37%), Positives = 101/171 (59%), Gaps = 2/171 (1%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M I L +++ LRTGR S MLD + VE G +PLN++A V V++P+ L V+ +D Sbjct: 91 QMEAAIVSLSRELTKLRTGRASAGMLDHIIVETDGVKMPLNRLAVVAVMDPKTLSVNPYD 150 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 MV+++E+ I S LGLNP V+G+ L +P T+E A+ KV E+ K SVR Sbjct: 151 PNMVSALEKAIVSSPLGLNPRVDGERLIASIPPLTKEHMQAMCKVVGKSCEEVKQSVRRA 210 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 R+ +D +KK+ S+D V LE ++ ++T +K+ + + K+KEI Sbjct: 211 RQKALDTIKKA--GSNLSKDDVKRLEKEVDELTKKFVKSAEDICKAKEKEI 259 >gi|258647586|ref|ZP_05735055.1| ribosome recycling factor [Prevotella tannerae ATCC 51259] gi|260852386|gb|EEX72255.1| ribosome recycling factor [Prevotella tannerae ATCC 51259] Length = 186 Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats. Identities = 70/180 (38%), Positives = 110/180 (61%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + + +M ++ L++ + +R GR + +LD +++ +YGS VPLN VA +T + R + Sbjct: 8 LADCEKKMDASVMHLEETLAQIRAGRANVHILDAIRINSYGSMVPLNNVAAITTPDARTI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK M A +E+ I +S +G+ P G+V+R+ +P TEERR L K + E++K Sbjct: 68 AIKPWDKSMFAPIEKAIIDSEVGIMPENNGEVIRLAIPALTEERRKQLAKQCNKEGEEAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RN RR+G D LKK+ K G SED E D+QKI D +K +D+ EK KEIM Sbjct: 128 MAIRNARREGNDKLKKALKDG-LSEDSEKDAEADLQKIHDRKVKQVDTLLAEKNKEIMTV 186 >gi|283778745|ref|YP_003369500.1| ribosome recycling factor [Pirellula staleyi DSM 6068] gi|283437198|gb|ADB15640.1| ribosome recycling factor [Pirellula staleyi DSM 6068] Length = 186 Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats. Identities = 59/178 (33%), Positives = 100/178 (56%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++++RM IS LK + +RTGR +P ++D ++VE YGS P+ +A+V EP+ + Sbjct: 7 LFDVEERMEKAISVLKGQLAGIRTGRANPGLVDSLRVEVYGSPTPMKSLASVGAPEPQQI 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +D + +E+ I S LG P +G+V+R+ VP T E R LV E++K Sbjct: 67 VIRPYDASTIKDIEKAIIASGLGFAPQNDGRVIRLNVPPLTTETRRKLVARIKELTEEAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +S+RN+RRDG ++ K SED ++ D+Q++T + ++ E+M Sbjct: 127 VSIRNVRRDGNKAAEQEEKDKLLSEDECKKVKEDVQELTKKYENTAGEMAKHREAEVM 184 >gi|307298261|ref|ZP_07578065.1| ribosome recycling factor [Thermotogales bacterium mesG1.Ag.4.2] gi|306916347|gb|EFN46730.1| ribosome recycling factor [Thermotogales bacterium mesG1.Ag.4.2] Length = 184 Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats. Identities = 70/180 (38%), Positives = 115/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ ++RM ++ + ++ +RTGR SP++L+ VKV+ YG P+NQ+A +T E R L Sbjct: 5 LKDAENRMKKSVEKIVEEYAQMRTGRPSPALLESVKVDYYGVPTPINQIATITTTEDRSL 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WD+ +++ VE+ I S L L PI +G +++ P T E+R VK+A AEK K Sbjct: 65 VIKPWDRSVLSQVEKAIFASKLDLTPINDGVNIKLNFPVPTTEQREKWVKIARDNAEKGK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIRRD + ++ K+ + +ED + E +IQ++T+ I+ +D FE+K KEIM F Sbjct: 125 IAIRNIRRDVIKEARELEKASEMTEDDLKKFEEEIQELTNRYIEEMDKAFEKKSKEIMDF 184 >gi|255644392|gb|ACU22701.1| unknown [Glycine max] Length = 261 Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats. Identities = 61/176 (34%), Positives = 96/176 (54%), Gaps = 2/176 (1%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 N +M ++ L ++ LRTGR SP MLD + VE G +PLN++A V+VL+P+ L Sbjct: 85 ANAVSQMEAAMAALSTELSKLRTGRASPGMLDHIIVETSGLKMPLNRLAVVSVLDPKTLS 144 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+ +D E + +E I S LGLNP +G+ L +P T+E A+ K+ E ++ Sbjct: 145 VNPYDPETLKQLENAIVSSPLGLNPKSDGERLIAVIPPLTKEHMQAMTKLVAKSCEDARQ 204 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 S+R R+ MD +KK +D + LE ++ +T IK+ + K+KEI Sbjct: 205 SIRRARQQAMDAIKKLY--SSLPKDDIKRLEKEVDDLTKKFIKSAKDICKAKEKEI 258 >gi|91761973|ref|ZP_01263938.1| Ribosome recycling factor [Candidatus Pelagibacter ubique HTCC1002] gi|91717775|gb|EAS84425.1| Ribosome recycling factor [Candidatus Pelagibacter ubique HTCC1002] Length = 183 Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats. Identities = 80/183 (43%), Positives = 113/183 (61%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 + + + +M TI +K++ +LRTGR + SMLDLVKV+ YG +PLNQV+++T + Sbjct: 1 MFNEKTYSQKMDKTIEVFQKELTSLRTGRANASMLDLVKVDVYGQAMPLNQVSSITTPDA 60 Query: 64 RMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAE 123 R + + VWD V V+ I +S LGLNP ++GQ++R+PVP+ EERR + K+ + E Sbjct: 61 RTINIQVWDLNNVPLVDTAIKKSELGLNPQIDGQLIRLPVPDLNEERRTEIKKLIKSMGE 120 Query: 124 KSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 K KIS+RNIRR+ D LK K SED E +Q TD IK ID+ E K+KEI Sbjct: 121 KCKISIRNIRREANDDLKNLVKEKIISEDEEKINEKLVQSFTDEHIKIIDTKVEAKEKEI 180 Query: 184 MHF 186 M Sbjct: 181 MTI 183 >gi|294056380|ref|YP_003550038.1| ribosome recycling factor [Coraliomargarita akajimensis DSM 45221] gi|293615713|gb|ADE55868.1| ribosome recycling factor [Coraliomargarita akajimensis DSM 45221] Length = 185 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 75/185 (40%), Positives = 111/185 (60%), Gaps = 3/185 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 N++ + ++ M + +L TG+ SP+MLD VKV+AYGS V L +VA VT Sbjct: 4 NEI--MSSVTADMKKAVEHTLGQFGSLHTGKASPAMLDSVKVDAYGSTVTLKEVAAVTTP 61 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 + R +VV WDK ++ VE+GI ++NLG NP+V+G +LR+PVPE T ERR L K A Sbjct: 62 DARTIVVQPWDKSVIREVEKGIIDANLGFNPLVDGGILRVPVPELTGERRAELAKQAGGM 121 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 AE ++ +R++RRDG+D LK ++ G SED V E +IQ D I I+ +K+ Sbjct: 122 AEDGRVRIRSVRRDGLDLLKSAKDDG-LSEDDVKRYEKEIQTEHDKYIAEINDQLSKKEA 180 Query: 182 EIMHF 186 ++ Sbjct: 181 DLKKV 185 >gi|182415960|ref|YP_001821026.1| ribosome recycling factor [Opitutus terrae PB90-1] gi|177843174|gb|ACB77426.1| ribosome recycling factor [Opitutus terrae PB90-1] Length = 181 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 64/180 (35%), Positives = 109/180 (60%), Gaps = 4/180 (2%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + + +M + + + TG+ +P+M++ V +EAYGS + L A ++ + R++ Sbjct: 6 LVDAQAKMKKAVDHTLHEFSAIHTGKATPAMVEGVMLEAYGSQMRLKDCAAISTPDARLI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WD +V ++ +GI E+NLG NPI + +V+R+P+PE + ERR VK AH AE+ + Sbjct: 66 QIQPWDASLVKAIVKGIQEANLGFNPIPDSKVVRVPLPEMSRERRQEFVKNAHRLAEEGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 + VRN+RRD ++ LKK++ ED LE DIQ TD++IK I+ K+K+++ Sbjct: 126 VHVRNVRRDVLEGLKKAK----LPEDESKRLEKDIQTATDASIKAINDALAHKEKDLLTV 181 >gi|288818005|ref|YP_003432352.1| ribosome recycling factor [Hydrogenobacter thermophilus TK-6] gi|288787404|dbj|BAI69151.1| ribosome recycling factor [Hydrogenobacter thermophilus TK-6] gi|308751605|gb|ADO45088.1| ribosome recycling factor [Hydrogenobacter thermophilus TK-6] Length = 181 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 69/186 (37%), Positives = 113/186 (60%), Gaps = 6/186 (3%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M + ++ ++ M ++ K ++ LRTGR S ++++ +KVE YGS VP+ Q+ +++V Sbjct: 2 MEDIF--KSAEEDMKKAVNHFKNEIGGLRTGRASTALVEELKVEYYGSKVPIKQLGSISV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E +V+ +WD V +VE+ I E LGLNP +G LRI +P TEERR LV++ H Sbjct: 60 PEANQIVLQLWDSNAVPNVEKVIMEE-LGLNPQRQGNTLRIILPPLTEERRKELVRLLHK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE++++++RNIRRD + +++ SED + + +QK+TD I I+ E K+ Sbjct: 119 MAEEARVAIRNIRRDAKEMIEELE---GVSEDEIKRALDRLQKLTDRYIDQINHLVETKE 175 Query: 181 KEIMHF 186 KEIM Sbjct: 176 KEIMEL 181 >gi|159901963|gb|ABX10694.1| ribosome recycling factor [uncultured planctomycete 8FN] Length = 186 Score = 205 bits (523), Expect = 2e-51, Method: Composition-based stats. Identities = 58/179 (32%), Positives = 100/179 (55%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + ++RM + LK + +RTGR +P ++D ++V+ YGS P+ Q+A V EP + Sbjct: 7 LLDTEERMTKALDVLKNALSGIRTGRANPGLVDSIRVDVYGSPTPIKQIATVGAPEPTQI 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ +D ++ +E+ I +LG NP +G+V+RI VP + + R +V +E +K Sbjct: 67 VIRPYDASIIKEIEKAIVAGDLGYNPQSDGRVIRINVPALSTDVRKKMVSRIKELSEDAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ISVRN+RRD + K SED +++++Q +T I + + K+KE+M Sbjct: 127 ISVRNVRRDSNKAADTAEKDKSISEDERDDIKDEVQTLTKQHEDEISAMAKAKEKEVME 185 >gi|194334661|ref|YP_002016521.1| ribosome recycling factor [Prosthecochloris aestuarii DSM 271] gi|238693307|sp|B4S4H8|RRF_PROA2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|194312479|gb|ACF46874.1| ribosome recycling factor [Prosthecochloris aestuarii DSM 271] Length = 186 Score = 205 bits (523), Expect = 2e-51, Method: Composition-based stats. Identities = 71/180 (39%), Positives = 109/180 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + + +M +I + ++ ++RTG+ + ++LD VKV+AYG +PL QV NV V + L Sbjct: 7 ISKGEAKMKKSIESFQHEIASVRTGKATTALLDRVKVDAYGQQMPLKQVGNVGVQDAHTL 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V VWDK MVA+ E+ I ++NLGLNP EGQ +R+ +P TEERR VK+ Y+E SK Sbjct: 67 MVQVWDKSMVAATEKAIRDANLGLNPAAEGQSIRVSIPPLTEERRKEYVKLTRKYSEDSK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RN+RR+ + L K K + SED + + D + K I +K+KEIM Sbjct: 127 VALRNLRREILHALDKLEKDKQISEDEKSRGKKDADDLVHKYEKRILDIVGQKEKEIMEV 186 >gi|254508643|ref|ZP_05120758.1| ribosome recycling factor [Vibrio parahaemolyticus 16] gi|219548400|gb|EED25410.1| ribosome recycling factor [Vibrio parahaemolyticus 16] Length = 151 Score = 205 bits (523), Expect = 2e-51, Method: Composition-based stats. Identities = 66/151 (43%), Positives = 95/151 (62%) Query: 36 SMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVE 95 S+L + VE YG+ PLNQVANV + R L ++V+DKE+ VE+ I S+LGLNP+ Sbjct: 1 SLLAGISVEYYGAPTPLNQVANVVAEDARTLAITVFDKELTQKVEKAIMMSDLGLNPMSA 60 Query: 96 GQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVA 155 G ++R+P+P TEERR LVK+ AE ++++RNIRRD LK K + SED Sbjct: 61 GTIIRVPLPPLTEERRKDLVKIVRGEAEGGRVAIRNIRRDANGELKALLKDKEISEDEDR 120 Query: 156 SLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 + +IQK+TD+ +K +D K+KE+M Sbjct: 121 KGQEEIQKLTDAAVKQVDEVLAAKEKELMEV 151 >gi|295098990|emb|CBK88079.1| ribosome recycling factor [Eubacterium cylindroides T2-87] Length = 181 Score = 205 bits (523), Expect = 2e-51, Method: Composition-based stats. Identities = 76/181 (41%), Positives = 116/181 (64%), Gaps = 3/181 (1%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 +L ++RM I L+ ++ T+RTGR S +L+ V+V+ YGS +P+NQ++++ V+E Sbjct: 4 NLIKAEERMLKAIENLESNLKTIRTGRASSQILERVQVDYYGSMMPINQLSSIQVVEGTQ 63 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 LVV +D+ ++ SV I +NLGLNP VE V+RI VP+ T+ERR L K A Y E++ Sbjct: 64 LVVKPYDRSIIKSVGHAIQAANLGLNPQVEADVIRILVPQLTQERREQLAKDAQKYGEEA 123 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 K+++RNIRRD D K K+ + +ED + D QK+TD IK ++ EKKKEI++ Sbjct: 124 KVAIRNIRRDANDATK---KNKELTEDDRKAELEDSQKLTDDYIKQVEQIVNEKKKEILN 180 Query: 186 F 186 Sbjct: 181 V 181 >gi|251771482|gb|EES52059.1| ribosome recycling factor [Leptospirillum ferrodiazotrophum] Length = 184 Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats. Identities = 64/179 (35%), Positives = 118/179 (65%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 DL+ +M + +K++ TLRTGR S ++++ ++++ YG+ V L++VA + +++ RM Sbjct: 4 DLKGYGVKMDQAVEHFRKEISTLRTGRPSLALVEHIRLDYYGNQVSLDKVAALNIVDNRM 63 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 + ++ W+ ++++ +E+ I +NLG+ P +G+ +R+ VP TEERR LVK+ AE++ Sbjct: 64 ITITPWETKLISDIEKAIMGANLGMTPQNDGKCVRLVVPPMTEERRKELVKILKKMAEEA 123 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 K+S+RNIRRD + LKK K G +ED V L+ D+QK+ D ++ ++K++EI+ Sbjct: 124 KVSLRNIRRDANEDLKKKSKDGLITEDRVKRLQEDVQKMVDGASSKVEEHAKKKEQEIL 182 >gi|71083606|ref|YP_266325.1| ribosome recycling factor [Candidatus Pelagibacter ubique HTCC1062] gi|71062719|gb|AAZ21722.1| Ribosome recycling factor [Candidatus Pelagibacter ubique HTCC1062] Length = 183 Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats. Identities = 80/183 (43%), Positives = 114/183 (62%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 + + ++ +M TI +K++ +LRTGR + SMLDLVKV+ YG +PLNQV+++T + Sbjct: 1 MFNEKSYSQKMDKTIEVFQKELTSLRTGRANSSMLDLVKVDVYGQAMPLNQVSSITTPDA 60 Query: 64 RMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAE 123 R + + VWD V V+ I +S LGLNP ++GQ++R+PVP+ EERR + K+ + E Sbjct: 61 RTINIQVWDLNNVPLVDTAIKKSELGLNPQIDGQLIRLPVPDLNEERRTEIKKLIKSMGE 120 Query: 124 KSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 K KIS+RNIRR+ D LK K SED E +Q TD IK ID+ E K+KEI Sbjct: 121 KCKISIRNIRREANDDLKNLVKEKIISEDEEKINEKLVQSFTDEHIKIIDTKVEVKEKEI 180 Query: 184 MHF 186 M Sbjct: 181 MTI 183 >gi|110596934|ref|ZP_01385224.1| ribosome recycling factor [Chlorobium ferrooxidans DSM 13031] gi|110341621|gb|EAT60081.1| ribosome recycling factor [Chlorobium ferrooxidans DSM 13031] Length = 186 Score = 205 bits (522), Expect = 3e-51, Method: Composition-based stats. Identities = 72/179 (40%), Positives = 109/179 (60%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q + +M TI + ++ ++RTG+ + ++LD VKVEAYG +PL QV NV VL+ L+ Sbjct: 8 QKTEQKMKKTIEAFQHEIASIRTGKATTALLDRVKVEAYGQQMPLKQVGNVGVLDVHTLM 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V VWDK MV++ E+ I ++NLGLNP +GQ +R+ +P TEERR VK+ + E SKI Sbjct: 68 VQVWDKSMVSATEKAIRDANLGLNPSADGQNIRVSIPPLTEERRKEFVKLTRKFGEDSKI 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RN+RRD + ++K K SED + + ++ + K + K+KEIM Sbjct: 128 SLRNLRRDMIHEIEKLEKDKAISEDDKNRGKKEADELLHKSEKQLTEIMSAKEKEIMEV 186 >gi|124516676|gb|EAY58184.1| ribosome recycling factor [Leptospirillum rubarum] Length = 184 Score = 205 bits (522), Expect = 3e-51, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 125/179 (69%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 DL+ + ++ + F KK++ TLRTGR S S+L+ VKV YG+ +++VA++ +++ R+ Sbjct: 4 DLKEPQKKLESAVEFFKKEIQTLRTGRPSLSLLENVKVSYYGNPSSVDKVASLNIMDNRI 63 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 +V+S WD +M+ +E+ I +N+GL P +G+V+RI VP TEERR +VK+ AE++ Sbjct: 64 IVISPWDMKMIPEIEKAILAANIGLTPQNDGKVIRIAVPPMTEERRKQMVKLLKKMAEEA 123 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 KI++RNIRRDG D LKK + G ED + L++++QK+TD T++ ID ++K++EIM Sbjct: 124 KIAIRNIRRDGNDELKKKKSDGLIQEDRLKKLQDELQKMTDQTVQKIDDLTQKKEQEIM 182 >gi|70728561|ref|YP_258310.1| ribosome recycling factor [Pseudomonas fluorescens Pf-5] gi|85543002|sp|Q4KHH3|RRF_PSEF5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|68342860|gb|AAY90466.1| ribosome recycling factor [Pseudomonas fluorescens Pf-5] Length = 185 Score = 205 bits (522), Expect = 3e-51, Method: Composition-based stats. Identities = 63/179 (35%), Positives = 99/179 (55%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ L +RTG+ PS+L V V YG+ PL+ VANVTV + + L Sbjct: 7 KDAQERMKKSLESLAHAFGQIRTGKAHPSILGSVMVPYYGTDTPLSGVANVTVKDSQTLQ 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +++ M+ ++++ I + L LNP G++L I + TEE R K A A AE +++ Sbjct: 67 VVPFERNMLGAIDKAIGSAGLNLNPTNLGELLLIKMAPLTEETRKGFTKQARAAAEDARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +VRNIRRD + LKK K + SED +I K+ I EEK+K++M Sbjct: 127 AVRNIRRDALGELKKLTKDKEISEDEERRGSAEIDKLIKDFEAQIAKATEEKEKDLMAV 185 >gi|281420570|ref|ZP_06251569.1| ribosome recycling factor [Prevotella copri DSM 18205] gi|281405343|gb|EFB36023.1| ribosome recycling factor [Prevotella copri DSM 18205] Length = 186 Score = 204 bits (521), Expect = 3e-51, Method: Composition-based stats. Identities = 72/180 (40%), Positives = 116/180 (64%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +RM +L +++ +R GR + ++LD V+V +YGS VPLNQVA VT + R + Sbjct: 8 LNSAAERMEMAAMYLAEELSHVRAGRANVAILDGVRVNSYGSMVPLNQVATVTTPDARTI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK+ + +E+ I +S +G+ P G+++R+ +P+ T ERR LVK + AE++K Sbjct: 68 AIRPWDKKAIKDIEKAIMDSGVGITPENNGEIVRLGIPQPTGERRKELVKQCNKIAERAK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I VRN+R++ + LKK+ K G SED+ END+QK+ D IK +++ +EK+KEIM Sbjct: 128 IEVRNVRQEIKEKLKKAIKDG-LSEDLEKDAENDLQKLHDKYIKQLENLMDEKEKEIMTV 186 >gi|288928495|ref|ZP_06422342.1| ribosome recycling factor [Prevotella sp. oral taxon 317 str. F0108] gi|288331329|gb|EFC69913.1| ribosome recycling factor [Prevotella sp. oral taxon 317 str. F0108] Length = 186 Score = 204 bits (521), Expect = 3e-51, Method: Composition-based stats. Identities = 76/180 (42%), Positives = 112/180 (62%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 LQ+ +DRM +L++ + +R GR + ++LD V+VE+YG VPLNQVANV+ + R + Sbjct: 8 LQDAQDRMEMAAMYLEEQLSRVRAGRANVAILDGVRVESYGMTVPLNQVANVSAPDARTI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + +DK+ + +E+ I +S++G+ P G+V+R+ +P+ TEERR L K + EKSK Sbjct: 68 AIKPFDKKAIRDIEKAIMDSDVGITPENNGEVIRLGIPQPTEERRRELTKQCNKIGEKSK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I VRN+R + D LKK+ K G SED E +QK+ D IK ID E K KEIM Sbjct: 128 IEVRNVRAEIKDKLKKAIKDG-LSEDNEKDAEEKLQKLHDKFIKKIDELLEAKNKEIMTV 186 >gi|268680896|ref|YP_003305327.1| ribosome recycling factor [Sulfurospirillum deleyianum DSM 6946] gi|268618927|gb|ACZ13292.1| ribosome recycling factor [Sulfurospirillum deleyianum DSM 6946] Length = 186 Score = 204 bits (520), Expect = 4e-51, Method: Composition-based stats. Identities = 62/179 (34%), Positives = 112/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + K+ M I+ LK+D T+R+G+VS S+LD + V+ YG+ LNQVA + + + Sbjct: 8 ADQKEHMEKCIAALKRDFTTIRSGKVSISILDNIHVDYYGTPTALNQVATILATDATTIT 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++ W+K+M+ +E+ I ++N+G+NP +G+ +++ P T E+R K A A +K+KI Sbjct: 68 ITPWEKKMLREIEKAIMQANIGVNPNNDGESVKLFFPPMTTEQRKESAKQAKAMGDKAKI 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+R+D D +KK K +ED ++++QKITD+T+ +D +EK+ E++ Sbjct: 128 AIRNVRKDANDQVKKLEKDKLITEDQSKKGQDEVQKITDATVTKVDDLVKEKEAEVLKI 186 >gi|254457533|ref|ZP_05070961.1| ribosome recycling factor [Campylobacterales bacterium GD 1] gi|207086325|gb|EDZ63609.1| ribosome recycling factor [Campylobacterales bacterium GD 1] Length = 185 Score = 204 bits (520), Expect = 5e-51, Method: Composition-based stats. Identities = 58/186 (31%), Positives = 110/186 (59%), Gaps = 2/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ D + +M +I +++D TLRTG+++ S+LD V+++ YG+ L+QV ++ Sbjct: 2 LNEIYD--ACEKKMKSSIEHMQRDFKTLRTGKITTSVLDNVRIDYYGTMTSLDQVGSIIA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + +VV+ W+K ++ ++E I ++N+G NP +G +++ P T E+R VK Sbjct: 60 TDATTIVVNPWEKNLLPAIESAISKANVGANPNNDGDQIKLFFPAMTVEQRKESVKQMKG 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E +K+S+RN R++ D +KK K + + D S +++IQKITD N + ++K+ Sbjct: 120 MGENAKVSLRNDRKNANDQIKKLEKDKEITADESKSAQDNIQKITDKFSANTEQILKDKE 179 Query: 181 KEIMHF 186 EI+ Sbjct: 180 AEILKV 185 >gi|194337415|ref|YP_002019209.1| ribosome recycling factor [Pelodictyon phaeoclathratiforme BU-1] gi|238693401|sp|B4SER6|RRF_PELPB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|194309892|gb|ACF44592.1| ribosome recycling factor [Pelodictyon phaeoclathratiforme BU-1] Length = 186 Score = 204 bits (519), Expect = 6e-51, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 111/179 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q I+ RM TI + ++ ++RTG+ + ++LD VKVEAYG +PL QV N++VL+ L+ Sbjct: 8 QKIEPRMKKTIEAFQHEIASIRTGKATTALLDRVKVEAYGQQMPLKQVGNISVLDVHTLI 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +WDK MV++ ER I ++NLGLNP +GQ +R+ +P TEERR VK+ + E SK+ Sbjct: 68 VQIWDKSMVSATERAIRDANLGLNPAADGQNIRVSIPPLTEERRKEFVKLTKKFGEDSKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RN+RRD + ++K KS SED + D ++ K + K+KEIM Sbjct: 128 SLRNLRRDMIQEIEKLEKSKAISEDDKNKGKKDADEMLHKFEKQLTELIVHKEKEIMEV 186 >gi|260899614|ref|ZP_05908009.1| ribosome recycling factor [Vibrio parahaemolyticus AQ4037] gi|308110171|gb|EFO47711.1| ribosome recycling factor [Vibrio parahaemolyticus AQ4037] Length = 156 Score = 203 bits (518), Expect = 8e-51, Method: Composition-based stats. Identities = 65/150 (43%), Positives = 95/150 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK ++ +RTGR PS+L + VE YG+ PLNQVANV + R L Sbjct: 7 KDAQERMDKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAATPLNQVANVVAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++V+DKE+ VE+ I S+LGLNP+ G ++R+P+P TEERR LVK+ AE ++ Sbjct: 67 ITVFDKELTQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASL 157 +VRNIRRD + LK K + SED Sbjct: 127 AVRNIRRDANNDLKALLKDKEISEDEDRKA 156 >gi|145219223|ref|YP_001129932.1| ribosome recycling factor [Prosthecochloris vibrioformis DSM 265] gi|189044065|sp|A4SD71|RRF_PROVI RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|145205387|gb|ABP36430.1| ribosome recycling factor [Chlorobium phaeovibrioides DSM 265] Length = 186 Score = 203 bits (518), Expect = 8e-51, Method: Composition-based stats. Identities = 69/180 (38%), Positives = 107/180 (59%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q + ++ +I + ++ ++RTG+ + ++LD VKVEAYG +PL QV N+ V + L Sbjct: 7 IQKNEAKLKKSIEAFQHEIASIRTGKATTALLDRVKVEAYGQLMPLKQVGNIGVADVHTL 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V VWDK MV E+ I ++NLGLNP+ EGQ +R+ +P TEERR VK+ + E SK Sbjct: 67 MVQVWDKGMVGPAEKAIRDANLGLNPVAEGQSIRVSIPPLTEERRKEFVKLTRKFGEDSK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +S+RN+RRD + ++K K ED + D ++ K I+ K+KEIM Sbjct: 127 VSLRNLRRDMIQEIEKLEKEKTIGEDEKNRGKKDADELLHKYEKQINELISHKEKEIMEV 186 >gi|327404464|ref|YP_004345302.1| ribosome recycling factor [Fluviicola taffensis DSM 16823] gi|327319972|gb|AEA44464.1| ribosome recycling factor [Fluviicola taffensis DSM 16823] Length = 187 Score = 203 bits (518), Expect = 9e-51, Method: Composition-based stats. Identities = 74/188 (39%), Positives = 112/188 (59%), Gaps = 3/188 (1%) Query: 1 MNQVIDL--QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 M + ++L +K +I L+ +++ +R G+ +PSML V V+ YGS P++QV NV Sbjct: 1 MTEELELIYDELKSSNAKSIDHLENELVKVRAGKATPSMLSGVLVDYYGSPTPIHQVGNV 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 ++ R L V ++K M+ + +GI +NLGLNP G+ L I +P TEERR LVK A Sbjct: 61 NSMDARTLTVQAFEKNMLNEIAKGIMNANLGLNPQNNGEQLIIQIPLLTEERRRDLVKKA 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 A AE +K+ +RN R+D +D +K + G SEDM E +IQ +T+ IK ID + Sbjct: 121 RAEAEHAKVGIRNNRKDAIDMVKSLKADG-LSEDMTKDAETEIQNLTNGFIKKIDELVDL 179 Query: 179 KKKEIMHF 186 K+K+IM Sbjct: 180 KEKDIMTI 187 >gi|206603564|gb|EDZ40044.1| Ribosome recycling factor [Leptospirillum sp. Group II '5-way CG'] Length = 184 Score = 203 bits (518), Expect = 9e-51, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 124/179 (69%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 DL+ + ++ + F KK++ TLRTGR S S+L+ VK+ YG+ +++VA++ +++ R+ Sbjct: 4 DLKEPQKKLESAVEFFKKEIQTLRTGRPSLSLLENVKISYYGNPSSVDKVASLNIMDNRI 63 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 +V+S WD +M+ +E+ I +N+GL P +G+V+RI VP TEERR +VK+ AE + Sbjct: 64 IVISPWDMKMIPEIEKAIMAANIGLTPQNDGKVIRIAVPPMTEERRKQMVKLLKKMAEDA 123 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 KI++RNIRRDG D LKK + G ED + L++++QKITD T++ +D ++K++EIM Sbjct: 124 KIAIRNIRRDGNDELKKKKSDGLIQEDRLKKLQDELQKITDQTVQKVDDLTQKKEQEIM 182 >gi|148272566|ref|YP_001222127.1| ribosome recycling factor [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|190360237|sp|A5CQS7|RRF_CLAM3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|147830496|emb|CAN01431.1| frrA [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 185 Score = 203 bits (518), Expect = 9e-51, Method: Composition-based stats. Identities = 61/181 (33%), Positives = 105/181 (58%), Gaps = 3/181 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +DRMG + +K+D ++RTGR +P++ V VE YGS PL Q+A++ E R L Sbjct: 7 LADARDRMGKAVEAVKEDFGSVRTGRANPALFQKVMVEYYGSPTPLGQLASMNNPEARTL 66 Query: 67 VVSVWDKEMVASVERGIHE-SNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 +V+ +DK + +E+ + NL +G+++R+ +PE TE+RR VK+ AE+ Sbjct: 67 IVTPYDKTALKEIEKALVNVPNLSATVGNDGEMVRLTLPELTEDRRKEFVKIVRGKAEEG 126 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++SVRNIRR D L + G+ +D VA E +++ +T + +D + K+ E++ Sbjct: 127 RVSVRNIRRRSKDELDALK--GEVGDDEVARGEKELESLTKTHTDQVDDALKRKETELLE 184 Query: 186 F 186 Sbjct: 185 V 185 >gi|119357866|ref|YP_912510.1| ribosome recycling factor [Chlorobium phaeobacteroides DSM 266] gi|166230777|sp|A1BI59|RRF_CHLPD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|119355215|gb|ABL66086.1| ribosome recycling factor [Chlorobium phaeobacteroides DSM 266] Length = 186 Score = 203 bits (517), Expect = 9e-51, Method: Composition-based stats. Identities = 71/179 (39%), Positives = 109/179 (60%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q + +M TI + ++ ++RTG+ + ++LD VKVEAYG +PL QV NV V++ L+ Sbjct: 8 QRTEPKMKKTIEAFQHEIASIRTGKATTALLDRVKVEAYGQQMPLKQVGNVGVMDVHTLM 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V VWDK MV++ ER I ++NLGLNP +GQ +R+ +P TEERR VK+ + E SK+ Sbjct: 68 VQVWDKSMVSATERAIRDANLGLNPAADGQSIRVSIPPLTEERRKEFVKLTKKFGEDSKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RN+RRD + ++K K SED + + ++ K ++ K+KEIM Sbjct: 128 SLRNLRRDMIHEIEKLEKEKAISEDDKNKGKKEADEMLHKFEKQLNDLIVLKEKEIMEV 186 >gi|307566353|ref|ZP_07628792.1| ribosome recycling factor [Prevotella amnii CRIS 21A-A] gi|307344930|gb|EFN90328.1| ribosome recycling factor [Prevotella amnii CRIS 21A-A] Length = 186 Score = 203 bits (517), Expect = 9e-51, Method: Composition-based stats. Identities = 68/180 (37%), Positives = 113/180 (62%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ K+RM + +L +++ +R GR + ++LD V+V +YG V LNQVA V V + R + Sbjct: 8 LKEAKERMNMAVMYLDEELQRIRAGRANVAILDSVRVSSYGQMVSLNQVATVMVPDARTI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WD++ + +E+ I +S++G+ P G+++R+ +P+ TEERR LVK + EK+K Sbjct: 68 AIKPWDRKAIKDIEKAIMDSDVGITPENNGEMIRLNLPQPTEERRRELVKQCNKIGEKTK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I +RN+R D + LKK+ K G SED+ E+D+QK+ D IK ++ K+KE+M Sbjct: 128 IQIRNVRTDIKEILKKAIKEG-LSEDLEKDAESDLQKVHDKYIKQVEDLLAAKEKEVMTV 186 >gi|189500982|ref|YP_001960452.1| ribosome recycling factor [Chlorobium phaeobacteroides BS1] gi|238692272|sp|B3EMY2|RRF_CHLPB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|189496423|gb|ACE04971.1| ribosome recycling factor [Chlorobium phaeobacteroides BS1] Length = 186 Score = 203 bits (517), Expect = 9e-51, Method: Composition-based stats. Identities = 68/179 (37%), Positives = 106/179 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q + +M ++ + ++ +RTG+ + ++LD VKV+AYG +PL Q+ NV V + L+ Sbjct: 8 QKAEAKMKKSVESFQHEIAAIRTGKATTALLDHVKVDAYGQTMPLKQIGNVGVQDAHTLM 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V VWDK MVA+ E+ I ++NLGLNP+ EGQ +R+ +P EERR VK+ Y E +KI Sbjct: 68 VQVWDKSMVAATEKAIRDANLGLNPVAEGQSIRVSIPPLNEERRKEYVKLTKKYGEDAKI 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++RN+RR+ + K K + ED A+ + D + K I +K+KEIM Sbjct: 128 ALRNLRREMLHGADKLEKDKEIGEDAKANCKKDADNLVHKYEKQISDMIVQKEKEIMEV 186 >gi|300854491|ref|YP_003779475.1| putative ribosome recycling factor [Clostridium ljungdahlii DSM 13528] gi|300434606|gb|ADK14373.1| predicted ribosome recycling factor [Clostridium ljungdahlii DSM 13528] Length = 185 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 114/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +MG TI LK ++ +++ GR S ++LD ++ E YGS P+NQ+ N+++ EPR+L Sbjct: 6 LNKADGKMGKTIDALKSELASMKAGRASAALLDRIEAEYYGSMTPINQLGNISIPEPRVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK + ++E+ I +S+LG+NP +G+V+R+ +PE TEE R +VK E SK Sbjct: 66 CIQPWDKTALKAIEKAILKSDLGINPSNDGEVIRLVIPELTEETRKDIVKNVKKAGEDSK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VR IRR+ D++K +K SED + E D+QK TD IK ID ++K+ EIM Sbjct: 126 VAVRAIRRECNDNIKALKKENDISEDEIKKAEADVQKKTDDFIKKIDEIIKKKENEIMSL 185 >gi|300728352|ref|ZP_07061716.1| ribosome recycling factor [Prevotella bryantii B14] gi|299774388|gb|EFI71016.1| ribosome recycling factor [Prevotella bryantii B14] Length = 186 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 72/180 (40%), Positives = 116/180 (64%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ + +M +FL +++ +R GR + ++LD V+VE+YG VPLNQVANV V + R + Sbjct: 8 LKDAESKMQKASNFLAEELARVRAGRANVAILDGVRVESYGQMVPLNQVANVQVSDARTI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WD++ + +E+GI +S +G+ P G+++ + +P+ TEERR LVK + E++K Sbjct: 68 TIRPWDRKQIRDIEKGIIDSEVGVTPENNGEMVILRLPQPTEERRKELVKQCNKIGEQTK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 + +RNIR D D LKK+ K G SED+ E D+QK D IK++D+ +K+KEIM Sbjct: 128 VQIRNIRADIKDKLKKAVKDG-LSEDLEKDAETDLQKTHDKFIKDVDAILADKQKEIMTV 186 >gi|189345927|ref|YP_001942456.1| ribosome recycling factor [Chlorobium limicola DSM 245] gi|238692183|sp|B3EFU4|RRF_CHLL2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|189340074|gb|ACD89477.1| ribosome recycling factor [Chlorobium limicola DSM 245] Length = 186 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 71/179 (39%), Positives = 108/179 (60%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q I+ +M TI + ++ ++RTG+ + ++LD VKVEAYG +PL QV N+ V++ L+ Sbjct: 8 QKIEPKMKKTIEAFQHEIASIRTGKATTTLLDRVKVEAYGQLMPLKQVGNIGVMDVHTLI 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V VWDK MV++ ER I ++NLGLNP +GQ +R+ +P TEERR VK+ + E SK+ Sbjct: 68 VQVWDKSMVSATERAIRDANLGLNPSADGQNIRVSIPPLTEERRKEFVKLTKKFGEDSKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RN+RRD + ++K K SED + + + K + K+KEIM Sbjct: 128 SLRNLRRDMIHDIEKLEKDKAISEDDKNRGKKEADDLLHKFEKQLSDLIALKEKEIMEV 186 >gi|282859177|ref|ZP_06268299.1| ribosome recycling factor [Prevotella bivia JCVIHMP010] gi|282587996|gb|EFB93179.1| ribosome recycling factor [Prevotella bivia JCVIHMP010] Length = 186 Score = 202 bits (516), Expect = 1e-50, Method: Composition-based stats. Identities = 71/180 (39%), Positives = 110/180 (61%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L KDRM +L +++ +R GR + ++LD V+V +YG V LNQVA V V + R + Sbjct: 8 LSEAKDRMEMAAMYLDEELQRIRAGRANVAILDGVRVSSYGQMVALNQVATVMVPDARTI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WDK+ + +E+ I +S++G+ P G+++R+ +P+ TEERR LVK + EK+K Sbjct: 68 AIKPWDKKAIKDIEKAIMDSDVGITPENNGEMIRLNLPQPTEERRKELVKQCNKIGEKTK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I +RNIR D + LKK+ K G SED+ E ++QKI D IK ++ K+KE+M Sbjct: 128 IQIRNIRADIKEILKKAIKDG-LSEDLEKDAETELQKIHDKYIKRVEELLAAKEKEVMTV 186 >gi|170781205|ref|YP_001709537.1| ribosome recycling factor [Clavibacter michiganensis subsp. sepedonicus] gi|190360238|sp|B0REP7|RRF_CLAMS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|169155773|emb|CAQ00894.1| ribosome recycling factor [Clavibacter michiganensis subsp. sepedonicus] Length = 185 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 61/181 (33%), Positives = 105/181 (58%), Gaps = 3/181 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + +DRMG + +K+D ++RTGR +P++ V VE YGS PL Q+A++ E R L Sbjct: 7 LADARDRMGKAVEAVKEDFGSVRTGRANPALFQKVMVEYYGSPTPLGQLASMNNPEARTL 66 Query: 67 VVSVWDKEMVASVERGIHE-SNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 +V+ +DK + +E+ + NL +G+++R +PE TE+RR VK+ AE+ Sbjct: 67 IVTPYDKTALKEIEKALVNVPNLSATVGNDGEMVRFTLPELTEDRRKEFVKIVRGKAEEG 126 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++SVRNIRR D L + G+ +D VA +E +++ +T + +D + K+ E++ Sbjct: 127 RVSVRNIRRRSKDELDALK--GEVGDDEVARVEKELEALTKTHTDQVDDALKRKETELLE 184 Query: 186 F 186 Sbjct: 185 V 185 >gi|224531659|ref|ZP_03672291.1| ribosome recycling factor [Borrelia valaisiana VS116] gi|224511124|gb|EEF81530.1| ribosome recycling factor [Borrelia valaisiana VS116] Length = 184 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 69/177 (38%), Positives = 109/177 (61%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 + ++M + L + TLRTGR+S ++ D + ++ +G P+ QV+++ + E R++V+ Sbjct: 8 LDEKMSKVLLSLDNEYKTLRTGRISSNIFDKIFIQYHGQRTPITQVSSIRIPEARLVVIQ 67 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 WDK ++ +E+ I S+L +NP +G V+RI VP T ERR +VK A AE+ KIS Sbjct: 68 PWDKSILNKIEQAILNSDLSMNPSSDGSVIRIKVPALTSERRQDIVKHAKKIAEEHKIST 127 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RNIR+D + +KK K + +ED + + +DIQK TD IK ID+ E K +EIM Sbjct: 128 RNIRQDLNNKVKKQEKESEITEDSLKRILDDIQKSTDIYIKKIDTILESKIQEIMEV 184 >gi|189485408|ref|YP_001956349.1| ribosome recycling factor [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|254809541|sp|B1H056|RRF_UNCTG RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|170287367|dbj|BAG13888.1| ribosome recycling factor [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 186 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 62/180 (34%), Positives = 115/180 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ M TI LK ++ ++RTGRV+ + ++ +KVE+YGS +P+NQ+A+++V + R + Sbjct: 7 FSAAEEVMKRTIDRLKCELSSIRTGRVNSAAIETIKVESYGSIMPINQIASISVSDARTI 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WD ++++E+ I ++++G++P +G+++R+ VP T+ERR + K AE+ + Sbjct: 67 EIRPWDVSQLSAIEKAILKADIGMSPANDGKLIRVSVPHLTQERRKEIAKSIGKMAEEFR 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RN RR ++++KK K +ED LE + QK+TD IK ID K+KE+M Sbjct: 127 VAIRNERRVLVENIKKLEKDKVITEDDKKKLEVEAQKVTDGYIKKIDDSIVVKEKEVMQV 186 >gi|302392360|ref|YP_003828180.1| ribosome recycling factor [Acetohalobium arabaticum DSM 5501] gi|302204437|gb|ADL13115.1| ribosome recycling factor [Acetohalobium arabaticum DSM 5501] Length = 185 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 62/179 (34%), Positives = 110/179 (61%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + + +M + I +K D +RTGR PS+++ + + YG+ P+NQ+A V+ EPR LV Sbjct: 7 KKTQQKMEEVIDEVKDDFDQIRTGRAKPSLIEGITADYYGTKTPINQMAKVSAPEPRQLV 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + WD ++ +E+ I +S+L L+P +G+V+RI +P+ TEE+R V +A+ AE+ +I Sbjct: 67 IQPWDDGVLEDIEKAIMKSDLDLSPNNDGEVIRINIPKLTEEKRKEYVSLANDKAEEHRI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +RN+RR+ D L++ +G+ SED +IQ +TD I +D ++K++ I+ Sbjct: 127 EIRNLRREANDELEELETAGEISEDNYHRGLENIQDLTDEYIAKVDELLDKKEEAILAI 185 >gi|125590832|gb|EAZ31182.1| hypothetical protein OsJ_15282 [Oryza sativa Japonica Group] Length = 260 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 63/174 (36%), Positives = 95/174 (54%), Gaps = 2/174 (1%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 +M + L +++ LRTGR SP MLD + VE G V LN++A V+VL+ L V Sbjct: 86 ATQQMEAAVVALSRELSKLRTGRASPGMLDHIMVETTGVKVALNRLAVVSVLDAHTLSVM 145 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 +D + S+E I S LG+NP +G + +P T+E AL KV AE K S+ Sbjct: 146 PYDPSSMKSIEHAIISSPLGINPTPDGNRIIANIPPLTKENIQALCKVVTKSAEDFKQSI 205 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 R R+ +D +KKS + +D V LE +++++T IK+ D + K+KEI Sbjct: 206 RRARQKALDTIKKS--ASGMPKDDVKRLEKEVEELTKKFIKSADDMCKAKEKEI 257 >gi|116787688|gb|ABK24606.1| unknown [Picea sitchensis] Length = 269 Score = 201 bits (513), Expect = 3e-50, Method: Composition-based stats. Identities = 64/175 (36%), Positives = 100/175 (57%), Gaps = 2/175 (1%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 +M I L +++ LRTGR S MLD + +E+ G PL+++A ++VL+ + L V+ Sbjct: 95 ASTQMQAGIDALSRELSKLRTGRASAGMLDHIIIESDGVRTPLSRIAAISVLDSQTLSVT 154 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 +D E + VER I S LGLNP +EGQ L +P+P T+E A+ K+ +E K S+ Sbjct: 155 PYDLEAIKDVERAIVSSPLGLNPTLEGQRLVVPIPALTKEHTQAMSKLVSKASEDVKQSI 214 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 R R+ +D +KK+ S+D V LE +I +T +K + + K+KEIM Sbjct: 215 RRARQKALDSIKKAV--SSMSKDDVKRLEKEIDDLTKKFVKTAEDMCKAKEKEIM 267 >gi|148910289|gb|ABR18224.1| unknown [Picea sitchensis] Length = 269 Score = 201 bits (513), Expect = 3e-50, Method: Composition-based stats. Identities = 64/175 (36%), Positives = 100/175 (57%), Gaps = 2/175 (1%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 +M I L +++ LRTGR S MLD + +E+ G PL+++A V+VL+ + L V+ Sbjct: 95 ASTQMQAGIDALSRELSKLRTGRASAGMLDHIIIESDGVRTPLSRIAAVSVLDSQTLSVT 154 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 +D + + VER I S LGLNP +EGQ L +P+P T+E A+ K+ +E K S+ Sbjct: 155 PYDLDAIKDVERAIVSSPLGLNPTLEGQRLVVPIPALTKEHTQAMSKLVSKASEDVKQSI 214 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 R R+ +D +KK+ S+D V LE +I +T +K + + K+KEIM Sbjct: 215 RRARQKALDSIKKAV--SSMSKDDVKRLEKEIDDLTKKFVKTAEDMCKTKEKEIM 267 >gi|290890488|ref|ZP_06553563.1| hypothetical protein AWRIB429_0953 [Oenococcus oeni AWRIB429] gi|290479884|gb|EFD88533.1| hypothetical protein AWRIB429_0953 [Oenococcus oeni AWRIB429] Length = 180 Score = 201 bits (513), Expect = 3e-50, Method: Composition-based stats. Identities = 74/183 (40%), Positives = 117/183 (63%), Gaps = 3/183 (1%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +IDL+ +K+RMG + +++ +R GR +P++L+ ++VE YG+ PLNQ+A+V + E Sbjct: 1 MIDLKEVKERMGKVSKAFQNELINIRAGRANPNILNKIQVEYYGTPTPLNQLASVQIPEA 60 Query: 64 RMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAE 123 R+L+++ +DK + ++E+ I S+LGL P +G +R+ +P+ TE+ R LVK A AE Sbjct: 61 RVLLITPYDKTSLKAIEQAIFASDLGLTPQNDGSAIRLIIPQLTEDSRKELVKQVKAEAE 120 Query: 124 KSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 K+K++ RN R D M LK K SED E+DIQK TD IK+ID + K+KE+ Sbjct: 121 KAKVAARNTRHDFMSDLK---KDNDLSEDSRHRTEDDIQKATDLEIKDIDRIADIKEKEL 177 Query: 184 MHF 186 M Sbjct: 178 MEI 180 >gi|195953623|ref|YP_002121913.1| ribosome recycling factor [Hydrogenobaculum sp. Y04AAS1] gi|259494546|sp|B4U9X4|RRF_HYDS0 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|195933235|gb|ACG57935.1| ribosome recycling factor [Hydrogenobaculum sp. Y04AAS1] Length = 182 Score = 201 bits (513), Expect = 3e-50, Method: Composition-based stats. Identities = 69/180 (38%), Positives = 108/180 (60%), Gaps = 4/180 (2%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ ++ M +I+ K ++ RTGR S S+++ +K+E YGS VP+ QV NV+V EP + Sbjct: 6 LEEAEESMKKSINHFKSELAGFRTGRASTSLVEDIKIEYYGSRVPIKQVGNVSVPEPNQI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ VWD+ ++ +E+ I E L LNP +G LRI +P T+ERR LVK+ H E++K Sbjct: 66 LIQVWDQNAISPIEKAIMEQ-LSLNPARQGNTLRITLPPLTQERRKELVKLLHKTTEEAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD + ++ SED + + +QKITD I I + K+KEI Sbjct: 125 VAIRNIRRDAKEMIESLE---GISEDEIKRALDKLQKITDHYIDEISNLSSSKEKEITEL 181 >gi|296129334|ref|YP_003636584.1| ribosome recycling factor [Cellulomonas flavigena DSM 20109] gi|296021149|gb|ADG74385.1| ribosome recycling factor [Cellulomonas flavigena DSM 20109] Length = 185 Score = 201 bits (513), Expect = 3e-50, Method: Composition-based stats. Identities = 61/180 (33%), Positives = 108/180 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + K+D +RTGR + +M + V+ YG+ PL Q+A+ V+E R + Sbjct: 6 LLEAEEKMDKAVEVAKEDFAAIRTGRANAAMFAKIFVDYYGAPTPLQQLASFNVVEARTI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +VS +DK ++E+ + +S+LG+NP +G V+R+ +P T ERR VK+A + AE ++ Sbjct: 66 LVSPFDKSSTTAIEKALRDSDLGVNPTNDGNVVRVVLPALTAERRKDFVKLAKSKAEDAR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ISVR++RR + L + K G+A ED VA E +++ +T ++ +D K+ E++ Sbjct: 126 ISVRSVRRRAKEELDRIAKDGEAGEDEVARAEKELEVLTKKHVELVDQLLASKESELLEV 185 >gi|115459126|ref|NP_001053163.1| Os04g0490400 [Oryza sativa Japonica Group] gi|21740669|emb|CAD41132.1| OSJNBa0084K20.10 [Oryza sativa Japonica Group] gi|38347444|emb|CAE02486.2| OSJNBa0076N16.8 [Oryza sativa Japonica Group] gi|113564734|dbj|BAF15077.1| Os04g0490400 [Oryza sativa Japonica Group] gi|125548818|gb|EAY94640.1| hypothetical protein OsI_16419 [Oryza sativa Indica Group] gi|215704152|dbj|BAG92992.1| unnamed protein product [Oryza sativa Japonica Group] Length = 260 Score = 201 bits (513), Expect = 3e-50, Method: Composition-based stats. Identities = 63/174 (36%), Positives = 95/174 (54%), Gaps = 2/174 (1%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 +M + L +++ LRTGR SP MLD + VE G V LN++A V+VL+ L V Sbjct: 86 ATQQMEAAVVALSRELSKLRTGRASPGMLDHIMVETTGVKVALNRLAVVSVLDAHTLSVM 145 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 +D + S+E I S LG+NP +G + +P T+E AL KV AE K S+ Sbjct: 146 PYDPSSMKSIEHAIISSPLGINPTPDGNRIIANIPPLTKENIQALCKVVTKSAEDFKQSI 205 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 R R+ +D +KKS + +D V LE +++++T IK+ D + K+KEI Sbjct: 206 RRARQKALDTIKKS--ASGMPKDDVKRLEKEVEELTKKFIKSADDMCKAKEKEI 257 >gi|116491008|ref|YP_810552.1| ribosome recycling factor [Oenococcus oeni PSU-1] gi|118586854|ref|ZP_01544288.1| ribosome recycling factor [Oenococcus oeni ATCC BAA-1163] gi|122276810|sp|Q04F85|RRF_OENOB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|116091733|gb|ABJ56887.1| ribosome recycling factor [Oenococcus oeni PSU-1] gi|118432686|gb|EAV39418.1| ribosome recycling factor [Oenococcus oeni ATCC BAA-1163] Length = 180 Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats. Identities = 74/183 (40%), Positives = 117/183 (63%), Gaps = 3/183 (1%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +IDL+ +K+RMG + +++ +R GR +P++L+ ++VE YG+ PLNQ+A+V + E Sbjct: 1 MIDLKEVKERMGKVSKAFQNELINIRAGRANPNILNKIQVEYYGAPTPLNQLASVQIPEA 60 Query: 64 RMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAE 123 R+L+++ +DK + ++E+ I S+LGL P +G +R+ +P+ TE+ R LVK A AE Sbjct: 61 RVLLITPYDKTSLKAIEQAIFASDLGLTPQNDGSAIRLIIPQLTEDSRKELVKQVKAEAE 120 Query: 124 KSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 K+K++ RN R D M LK K SED E+DIQK TD IK+ID + K+KE+ Sbjct: 121 KAKVAARNTRHDFMSDLK---KDNDLSEDSRHRTEDDIQKATDLEIKDIDRIADIKEKEL 177 Query: 184 MHF 186 M Sbjct: 178 MEI 180 >gi|111114943|ref|YP_709561.1| ribosome recycling factor [Borrelia afzelii PKo] gi|218249310|ref|YP_002374649.1| ribosome recycling factor [Borrelia burgdorferi ZS7] gi|123145787|sp|Q0SP43|RRF_BORAP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|226703255|sp|B7J154|RRF_BORBZ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|110890217|gb|ABH01385.1| ribosome releasing factor [Borrelia afzelii PKo] gi|218164498|gb|ACK74559.1| ribosome recycling factor [Borrelia burgdorferi ZS7] Length = 184 Score = 201 bits (512), Expect = 4e-50, Method: Composition-based stats. Identities = 69/177 (38%), Positives = 109/177 (61%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 + ++M + L + TLRTGR+S ++ D + ++ +G P+ QV+++ + E R++V+ Sbjct: 8 LDEKMSKVLLSLDNEYKTLRTGRISSNIFDKIFIQYHGQRTPITQVSSIRIPEARLVVIQ 67 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 WDK ++ +E+ I S+L +NP +G V+RI VP T ERR +VK A AE+ KIS Sbjct: 68 PWDKTILNKIEQAILNSDLSMNPSSDGSVIRIKVPALTSERRQDIVKHAKKIAEEHKIST 127 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RNIR+D + +KK K + +ED + + +DIQK TD IK ID+ E K +EIM Sbjct: 128 RNIRQDLNNKVKKQEKESEITEDSLKRILDDIQKSTDIYIKKIDAILESKIQEIMEV 184 >gi|225552204|ref|ZP_03773144.1| ribosome recycling factor [Borrelia sp. SV1] gi|225371202|gb|EEH00632.1| ribosome recycling factor [Borrelia sp. SV1] Length = 184 Score = 201 bits (512), Expect = 4e-50, Method: Composition-based stats. Identities = 70/176 (39%), Positives = 109/176 (61%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 + ++M + L + TLRTGR+S ++ D + ++ +G P+ QV+++ + E R++V+ Sbjct: 8 LDEKMSKVLLSLDNEYKTLRTGRISSNIFDRIFIQYHGQRTPITQVSSIRIPEARLVVIQ 67 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 WDK ++ +E+ I S+L +NP +G V+RI VP T ERR +VK A AE+ KIS Sbjct: 68 PWDKSILNKIEQAILNSDLSMNPSGDGSVIRIKVPALTSERRQDIVKHAKKIAEEHKIST 127 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 RNIR+D + +KK K + +ED + + +DIQK TD IK IDS E K +EIM Sbjct: 128 RNIRQDLNNKVKKQEKESEITEDSLKRILDDIQKSTDMYIKKIDSILESKIQEIME 183 >gi|216263749|ref|ZP_03435743.1| ribosome recycling factor [Borrelia afzelii ACA-1] gi|215979793|gb|EEC20615.1| ribosome recycling factor [Borrelia afzelii ACA-1] Length = 184 Score = 201 bits (511), Expect = 5e-50, Method: Composition-based stats. Identities = 69/177 (38%), Positives = 109/177 (61%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 + ++M + L + TLRTGR+S ++ D + ++ +G P+ QV+++ + E R++V+ Sbjct: 8 LDEKMSKVLLSLDNEYKTLRTGRISSNIFDKIFIQYHGQKTPITQVSSIRIPEARLVVIQ 67 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 WDK ++ +E+ I S+L +NP +G V+RI VP T ERR +VK A AE+ KIS Sbjct: 68 PWDKTILNKIEQAILNSDLSMNPSSDGSVIRIKVPALTSERRQDIVKHAKKIAEEHKIST 127 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RNIR+D + +KK K + +ED + + +DIQK TD IK ID+ E K +EIM Sbjct: 128 RNIRQDLNNKVKKQEKESEITEDSLKRILDDIQKSTDIYIKKIDAILESKIQEIMEV 184 >gi|91214958|ref|ZP_01251930.1| ribosome releasing factor [Psychroflexus torquis ATCC 700755] gi|91186563|gb|EAS72934.1| ribosome releasing factor [Psychroflexus torquis ATCC 700755] Length = 184 Score = 201 bits (511), Expect = 5e-50, Method: Composition-based stats. Identities = 77/188 (40%), Positives = 118/188 (62%), Gaps = 6/188 (3%) Query: 1 MNQVID--LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 MN+ I+ + + K+ M I L+K + ++R G+ +PSML V V+ YG+ P++QV+N+ Sbjct: 1 MNEEIEFIIDSTKESMEQAIQHLRKQLASIRAGKANPSMLSSVMVQYYGAKTPISQVSNI 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 + R L + ++K ++ +E+GI +NLG NP+ G+ + I VP TEERRL L K A Sbjct: 61 NTPDARTLTIQPFEKSIIKDIEKGIMNANLGFNPMNNGESVIINVPPLTEERRLQLSKKA 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 A AE++KI VRN RR+ M+ +KK+ ED+ E+DIQK+TDS I+ ID + Sbjct: 121 KAEAEEAKIGVRNDRRNAMNEIKKA----DLPEDVQKDTEDDIQKLTDSFIEEIDKIYAS 176 Query: 179 KKKEIMHF 186 K+KEIM Sbjct: 177 KEKEIMTV 184 >gi|50365372|ref|YP_053797.1| ribosome recycling factor [Mesoplasma florum L1] gi|60390251|sp|Q6F0R0|RRF_MESFL RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|50363928|gb|AAT75913.1| ribosome recycling factor [Mesoplasma florum L1] Length = 181 Score = 201 bits (511), Expect = 5e-50, Method: Composition-based stats. Identities = 76/186 (40%), Positives = 118/186 (63%), Gaps = 5/186 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M++++ + + +M DT+ ++ + T+RTGR S +MLD V V YG+ P+NQ A ++ Sbjct: 1 MDEILLI--AEQQMEDTVVAWQEHIKTIRTGRASATMLDKVMVNYYGTPTPVNQTAQIST 58 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EP++LV+ WDK ++ V I++S+L LNP+ + +V+RI +P TEE R LVK + Sbjct: 59 PEPQLLVIKPWDKTLIQEVVAAINKSDLNLNPVSDAEVVRINIPALTEEIRKDLVKKMNK 118 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E K+ +RNIRRD +D K K SED+V +E DIQK+TDS+IK +D + K+ Sbjct: 119 ELENFKVRIRNIRRDSIDTAK---KDKSISEDVVKGIETDIQKLTDSSIKQLDEISKVKE 175 Query: 181 KEIMHF 186 KE+M Sbjct: 176 KELMAI 181 >gi|289549254|ref|YP_003474242.1| ribosome recycling factor [Thermocrinis albus DSM 14484] gi|289182871|gb|ADC90115.1| ribosome recycling factor [Thermocrinis albus DSM 14484] Length = 182 Score = 201 bits (511), Expect = 5e-50, Method: Composition-based stats. Identities = 63/178 (35%), Positives = 108/178 (60%), Gaps = 4/178 (2%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ ++ M ++ K ++ LRTGR S ++++ +KV+ YGS VP+ Q+ ++T+ EP + Sbjct: 6 FKSAEEDMKKAVNHFKNEIAGLRTGRASTALVEELKVDYYGSKVPIKQLGSITIPEPNQI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ VWD V+++E+ I E NL L P +G LRI +P TEERR +V++ H AE+++ Sbjct: 66 LIQVWDSNAVSAIEKAIME-NLQLTPQKQGNTLRITLPPPTEERRREMVRLLHKMAEEAR 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 ++VRN RRD + ++ SED + +QK+TD I I+ E K+ EI+ Sbjct: 125 VAVRNARRDAKEMIEDME---GISEDEIKRALERLQKLTDKYIDEINKLTEAKETEIL 179 >gi|255071027|ref|XP_002507595.1| ribosomal recyclingfactor [Micromonas sp. RCC299] gi|226522870|gb|ACO68853.1| ribosomal recyclingfactor [Micromonas sp. RCC299] Length = 170 Score = 200 bits (510), Expect = 7e-50, Method: Composition-based stats. Identities = 59/173 (34%), Positives = 98/173 (56%), Gaps = 3/173 (1%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M TI +++ T+RTGR SP +L+ + V+ YG+ PL +AN + + + +V+ +D+ Sbjct: 1 MEKTIETVREKFNTVRTGRASPKILNRINVDYYGTLAPLITIANASTPDSQTIVIQPFDR 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 ++ +ER I S+LGLNP +G +R+ +P T ERR L K+ E+ K+++RN+R Sbjct: 61 TIINDIERAIMLSDLGLNPSNDGACIRLSIPPLTAERRQELAKLVSKLGEEGKVALRNVR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RD M + K SED V SLE I +T ++ + +EK+ +I Sbjct: 121 RDAMKSIGKVE---GVSEDDVKSLEEAIDTLTSDFVRKVGELVKEKEDDIFKV 170 >gi|224055693|ref|XP_002298606.1| predicted protein [Populus trichocarpa] gi|222845864|gb|EEE83411.1| predicted protein [Populus trichocarpa] Length = 273 Score = 200 bits (509), Expect = 8e-50, Method: Composition-based stats. Identities = 57/176 (32%), Positives = 92/176 (52%), Gaps = 2/176 (1%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + +M + L +++ LRTGR S MLD + VE G +PLN+ A V+V++ + L Sbjct: 97 ETANSQMDAAVVALSRELQKLRTGRASAGMLDHIIVETDGVKLPLNRSAVVSVMDAKTLS 156 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+ +D + +E I S LGLNP +G L +P T+E A+ KV E + Sbjct: 157 VNPYDPNTLKQLENAIVSSPLGLNPQRDGDRLIAAIPPLTKEHTQAMCKVVAKSCEDCRQ 216 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 S+R R+ MD +KK+ +D LE +I+++T +K+ + K+KEI Sbjct: 217 SIRRARQKAMDTVKKA--GSSFPKDDAKKLEKEIEEMTKKFVKSAEDMCNNKEKEI 270 >gi|261880120|ref|ZP_06006547.1| ribosome recycling factor [Prevotella bergensis DSM 17361] gi|270333204|gb|EFA43990.1| ribosome recycling factor [Prevotella bergensis DSM 17361] Length = 186 Score = 200 bits (509), Expect = 8e-50, Method: Composition-based stats. Identities = 72/180 (40%), Positives = 119/180 (66%), Gaps = 1/180 (0%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ +D+M + +L++++ +R GR + +++D V+V AYG VPLNQVA V++ + R + Sbjct: 8 LKSAEDKMSNGAKYLEEELARVRAGRANVAIVDGVRVNAYGESVPLNQVATVSIADARTI 67 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + WD++ +A VE+GI +S++G+ P G+++ + +P+ TEERR LVK + E++K Sbjct: 68 TIRPWDRKQIADVEKGIMDSDVGITPENNGEMVILHLPQPTEERRKELVKQCNKIGEQTK 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 + +RNIR + D LKK+ K G SED END+QK+ D IKN+++ E K KEIM Sbjct: 128 VQIRNIRSEYKDKLKKAVKDG-LSEDAGKDAENDLQKLHDKYIKNVEAILEAKHKEIMTV 186 >gi|192360685|ref|YP_001981611.1| ribosome recycling factor [Cellvibrio japonicus Ueda107] gi|190686850|gb|ACE84528.1| ribosome recycling factor [Cellvibrio japonicus Ueda107] Length = 150 Score = 200 bits (509), Expect = 9e-50, Method: Composition-based stats. Identities = 63/150 (42%), Positives = 92/150 (61%) Query: 37 MLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEG 96 MLD V+V YG+ PL+QVAN+ V + R L VS W++ +V +E+ I +S+LGLNP Sbjct: 1 MLDGVRVNYYGTETPLSQVANINVEDARTLSVSPWERNLVPDIEKAIMKSDLGLNPSTNN 60 Query: 97 QVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVAS 156 ++RIP+P TEE R +K A A AE ++++VRN+RRD + +K K SED Sbjct: 61 GLIRIPLPMLTEETRKNFIKQARAEAENARVAVRNVRRDVLADVKALLKDKAISEDDERR 120 Query: 157 LENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++DIQKITD I +D K+ ++M Sbjct: 121 AQDDIQKITDKFIAEVDKALSAKETDLMAI 150 >gi|223889153|ref|ZP_03623742.1| ribosome recycling factor [Borrelia burgdorferi 64b] gi|223885402|gb|EEF56503.1| ribosome recycling factor [Borrelia burgdorferi 64b] Length = 184 Score = 200 bits (509), Expect = 9e-50, Method: Composition-based stats. Identities = 69/174 (39%), Positives = 107/174 (61%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 ++M + L + TLRTGR+S ++ D + ++ + P+ QV+++ + E R++V+ W Sbjct: 10 EKMNKVLLSLDNEYKTLRTGRISSNIFDRICIQYHDRRTPITQVSSIRIPEARLVVIQPW 69 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 DK ++ +E+ I S+L +NP +G V+RI VP T ERR +VK A AE+ KIS RN Sbjct: 70 DKSILNKIEQAILNSDLSMNPSNDGSVIRIKVPNLTSERRQEIVKHAKKIAEEHKISTRN 129 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 IR+D + +KK K + +ED + + +DIQK TD IK IDS E K +EIM Sbjct: 130 IRQDLNNKVKKQEKESEITEDCLKRILDDIQKSTDMYIKKIDSILESKIQEIME 183 >gi|42563413|ref|NP_186829.3| ribosome recycling factor family protein / ribosome releasing factor family protein [Arabidopsis thaliana] gi|34146850|gb|AAQ62433.1| At3g01800 [Arabidopsis thaliana] gi|51970776|dbj|BAD44080.1| putative ribosome recycling factor [Arabidopsis thaliana] gi|62319213|dbj|BAD94407.1| putative ribosome recycling factor [Arabidopsis thaliana] gi|332640195|gb|AEE73716.1| ribosome recycling factor [Arabidopsis thaliana] Length = 267 Score = 199 bits (508), Expect = 1e-49, Method: Composition-based stats. Identities = 62/176 (35%), Positives = 99/176 (56%), Gaps = 2/176 (1%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 +M I L +D+ LRTGR +P MLD + VE G +PLN +A V+VL+P+ L V+ Sbjct: 93 ASSQMEAAIDALSRDLTKLRTGRAAPGMLDHIVVETGGVKMPLNHLALVSVLDPKTLSVN 152 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 +D + V +E+ I S LGLNP ++GQ L +P T+E A+ K+ +E K S+ Sbjct: 153 PYDPDTVKELEKAIVASPLGLNPKLDGQRLVASIPALTKEHIQAMCKIVTKSSEVVKQSI 212 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 R R+ +D +KK+ +D V LE ++ ++T +K+ + + K+KEI Sbjct: 213 RRARQKALDTIKKA--GSSLPKDEVKRLEKEVDELTKKFVKSAEDMCKSKEKEITE 266 >gi|163783687|ref|ZP_02178674.1| ribosome recycling factor [Hydrogenivirga sp. 128-5-R1-1] gi|159881012|gb|EDP74529.1| ribosome recycling factor [Hydrogenivirga sp. 128-5-R1-1] Length = 184 Score = 199 bits (508), Expect = 1e-49, Method: Composition-based stats. Identities = 64/180 (35%), Positives = 107/180 (59%), Gaps = 4/180 (2%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ + M ++ + ++ +RTGR S ++++ +KVE YGS VPL Q+ N++V E + Sbjct: 9 LRETEKDMRKSVEHFRGEIAGIRTGRASTALVEELKVEYYGSRVPLKQLGNISVPEHNQI 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ VWD + ++E+ I E L LNP +G +RI +P TEERR L ++ H AE+++ Sbjct: 69 LIQVWDNNAIPAIEKTIREE-LNLNPNTQGNTIRINLPPLTEERRKELARMLHKLAEEAR 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD + +++ SED +QK+TD I I+ E+K++EIM Sbjct: 128 VAVRNIRRDAKELIEELE---GISEDEKKRALERLQKLTDKHIDEINKLLEKKEEEIMTV 184 >gi|15594466|ref|NP_212255.1| ribosome recycling factor [Borrelia burgdorferi B31] gi|226321968|ref|ZP_03797493.1| ribosome recycling factor [Borrelia burgdorferi Bol26] gi|3914875|sp|O51147|RRF_BORBU RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|2688011|gb|AAC66513.1| ribosome releasing factor (frr) [Borrelia burgdorferi B31] gi|226232558|gb|EEH31312.1| ribosome recycling factor [Borrelia burgdorferi Bol26] Length = 184 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 69/176 (39%), Positives = 108/176 (61%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 + ++M + L + TLRTGR+S ++ D + ++ + P+ QV+++ + E R++V+ Sbjct: 8 LDEKMNKVLLSLDNEYKTLRTGRISSNIFDRICIQYHDRRTPITQVSSIRIPEARLVVIQ 67 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 WDK ++ +E+ I S+L +NP +G V+RI VP T ERR +VK A AE+ KIS Sbjct: 68 PWDKSILNKIEQAILNSDLSMNPSNDGSVIRIKVPNLTSERRQEIVKHAKKIAEEHKIST 127 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 RNIR+D + +KK K + +ED + + +DIQK TD IK IDS E K +EIM Sbjct: 128 RNIRQDLNNKVKKQEKESEITEDCLKRILDDIQKSTDMYIKKIDSILESKIQEIME 183 >gi|51971543|dbj|BAD44436.1| putative ribosome recycling factor [Arabidopsis thaliana] Length = 267 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 62/176 (35%), Positives = 99/176 (56%), Gaps = 2/176 (1%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 +M I L +D+ LRTGR +P MLD + VE G +PLN +A V+VL+P+ L V+ Sbjct: 93 ASSQMEAAIDALSRDLTKLRTGRAAPGMLDHIVVETGGVKMPLNHLALVSVLDPKTLSVN 152 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 +D + V +E+ I S LGLNP ++GQ L +P T+E A+ K+ +E K S+ Sbjct: 153 PYDPDTVKELEKAIVASPLGLNPKLDGQRLVASIPALTKEHIQAMCKIVTKSSEVVKQSI 212 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 R R+ +D +KK+ +D V LE ++ ++T +K+ + + K+KEI Sbjct: 213 RRARQKALDTIKKA--GSSLPKDEVKRLEKEVDELTKKFVKSAEDMCKSKEKEITE 266 >gi|78188304|ref|YP_378642.1| ribosome recycling factor [Chlorobium chlorochromatii CaD3] gi|123580409|sp|Q3ATS6|RRF_CHLCH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|78170503|gb|ABB27599.1| ribosome recycling factor [Chlorobium chlorochromatii CaD3] Length = 186 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 72/179 (40%), Positives = 108/179 (60%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q I+ +M + + ++ T+RTG+ + ++LD VKVEAYG +PL QV NV+V + L+ Sbjct: 8 QKIEPKMKKCLEAFQHEITTIRTGKATTTLLDRVKVEAYGQQMPLKQVGNVSVQDAHTLM 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V VWDK MV++ E+ I ++NLGLNP EGQ +R+ +P TEERR VK+ + E SK+ Sbjct: 68 VQVWDKSMVSATEKAIRDANLGLNPAAEGQSIRVSIPPLTEERRKEFVKLTKKFGEDSKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RN+RRD + ++K K+ SED + D + K + K+KEIM Sbjct: 128 SLRNLRRDMIQDIEKLEKAKAVSEDEKNKGKKDADDLLHKYEKLLMDMITAKEKEIMAV 186 >gi|195941859|ref|ZP_03087241.1| ribosome releasing factor (frr) [Borrelia burgdorferi 80a] gi|216264175|ref|ZP_03436167.1| ribosome recycling factor [Borrelia burgdorferi 156a] gi|221217383|ref|ZP_03588854.1| ribosome recycling factor [Borrelia burgdorferi 72a] gi|224532925|ref|ZP_03673535.1| ribosome recycling factor [Borrelia burgdorferi WI91-23] gi|224533972|ref|ZP_03674556.1| ribosome recycling factor [Borrelia burgdorferi CA-11.2a] gi|225549303|ref|ZP_03770276.1| ribosome recycling factor [Borrelia burgdorferi 94a] gi|225549848|ref|ZP_03770810.1| ribosome recycling factor [Borrelia burgdorferi 118a] gi|226320687|ref|ZP_03796245.1| ribosome recycling factor [Borrelia burgdorferi 29805] gi|215980648|gb|EEC21455.1| ribosome recycling factor [Borrelia burgdorferi 156a] gi|221192661|gb|EEE18877.1| ribosome recycling factor [Borrelia burgdorferi 72a] gi|224512124|gb|EEF82515.1| ribosome recycling factor [Borrelia burgdorferi WI91-23] gi|224512808|gb|EEF83175.1| ribosome recycling factor [Borrelia burgdorferi CA-11.2a] gi|225369539|gb|EEG98990.1| ribosome recycling factor [Borrelia burgdorferi 118a] gi|225370161|gb|EEG99601.1| ribosome recycling factor [Borrelia burgdorferi 94a] gi|226233903|gb|EEH32626.1| ribosome recycling factor [Borrelia burgdorferi 29805] gi|312148392|gb|ADQ31051.1| ribosome recycling factor [Borrelia burgdorferi JD1] gi|312149152|gb|ADQ29223.1| ribosome recycling factor [Borrelia burgdorferi N40] Length = 184 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 69/176 (39%), Positives = 108/176 (61%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 + ++M + L + TLRTGR+S ++ D + ++ + P+ QV+++ + E R++V+ Sbjct: 8 LDEKMNKVLLSLDNEYKTLRTGRISSNIFDRICIQYHDRRTPITQVSSIRIPEARLVVIQ 67 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 WDK ++ +E+ I S+L +NP +G V+RI VP T ERR +VK A AE+ KIS Sbjct: 68 PWDKSILNKIEQAILNSDLSMNPSNDGSVIRIKVPNLTSERRQEIVKHAKKIAEEHKIST 127 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 RNIR+D + +KK K + +ED + + +DIQK TD IK IDS E K +EIM Sbjct: 128 RNIRQDLNNKVKKQEKESEITEDSLKRILDDIQKSTDMYIKKIDSILESKIQEIME 183 >gi|330814009|ref|YP_004358248.1| ribosome recycling factor [Candidatus Pelagibacter sp. IMCC9063] gi|327487104|gb|AEA81509.1| ribosome recycling factor [Candidatus Pelagibacter sp. IMCC9063] Length = 173 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 84/173 (48%), Positives = 119/173 (68%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M +TI L +D+ T+RTGR SMLDL+KVE YG +P+NQVA ++ E ++L V VWD Sbjct: 1 MQNTIQSLTQDLSTIRTGRAHVSMLDLIKVEVYGQKMPINQVATISTPESQLLTVQVWDA 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 V V++ + ES+L +NP V+GQ++R+PVP+ +EERRL L+K+ +EK KIS+RNIR Sbjct: 61 ANVKFVDKALRESDLNINPTVDGQIVRVPVPKLSEERRLDLIKIVKNQSEKIKISIRNIR 120 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 R+GMD LK K+ SED A L N++Q+ITD I +D EK++EI+ Sbjct: 121 REGMDLLKNLLKNKDISEDDNAKLSNELQQITDKFINEVDKKISEKEQEIIKV 173 >gi|87310510|ref|ZP_01092639.1| Ribosome recycling factor [Blastopirellula marina DSM 3645] gi|87286731|gb|EAQ78636.1| Ribosome recycling factor [Blastopirellula marina DSM 3645] Length = 186 Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 57/177 (32%), Positives = 106/177 (59%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 +DRM I LK ++ +RTGR +P ++D ++VE YGS P+ Q+A+V+V EP L++ Sbjct: 9 EAEDRMEKAIEHLKHNLSGIRTGRANPGLVDSLRVEVYGSLQPIKQIASVSVPEPTQLLI 68 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 +D + +E+ I S+LG+ P +G+V+R+ VP + E R LV +E++K+S Sbjct: 69 RPYDTGAIKDIEKAIVASDLGMAPQSDGRVIRLNVPALSTEVRKKLVSRIKELSEEAKVS 128 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +RN+RRD + + K+ + ED+ ++N++Q++T + + + ++ E+M Sbjct: 129 IRNVRRDSNKSAETAEKNKEIGEDIRDDIKNEVQELTKKFEEKVAELAKTRETEVME 185 >gi|320103139|ref|YP_004178730.1| ribosome recycling factor [Isosphaera pallida ATCC 43644] gi|319750421|gb|ADV62181.1| ribosome recycling factor [Isosphaera pallida ATCC 43644] Length = 186 Score = 198 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 57/179 (31%), Positives = 107/179 (59%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + ++RM ++S L + + +RTGR + ++D ++VE YG+ PL Q+AN++ EP+ + Sbjct: 7 LLDAEERMEKSVSLLSEQLKGVRTGRATTGLVDSIRVEYYGNSTPLKQLANLSTPEPQQI 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D++++ + + I S LGLNP+ + +V+RI VP + E+R LV AE+++ Sbjct: 67 LIRPFDQQILGDIIKAIQASELGLNPVSDNKVIRINVPSLSVEQRKKLVARVKDLAEEAR 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +S+R+IRRD H +S +ED A + +IQ +T ++ ++K EI+ Sbjct: 127 VSIRSIRRDANKHADQSMTDKILTEDDCAKCKEEIQNLTKKYEGKVNELADKKSAEILE 185 >gi|297622140|ref|YP_003710277.1| Ribosome recycling factor [Waddlia chondrophila WSU 86-1044] gi|297377441|gb|ADI39271.1| Ribosome recycling factor [Waddlia chondrophila WSU 86-1044] Length = 183 Score = 198 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 65/177 (36%), Positives = 106/177 (59%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + + +M +I L ++ +RTG+ +P+ML+ V VE YG+ + L VA++T EPR L Sbjct: 4 IDQTEQKMKASIDHLTDELKKIRTGQANPAMLENVTVEVYGTSMKLRDVASITTPEPRQL 63 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +D + +GI ++NLG PIV+ V+RI +P+ E R +VK+ H E++K Sbjct: 64 LVTPYDANNTQVIGKGIEKANLGFRPIVDANVVRITIPQMDESVRQEMVKLCHKKREEAK 123 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +S+RN+RRD + ++K + G+ EDM E DIQ +TD K D K+KE+ Sbjct: 124 VSIRNVRRDSNEAVRKQKTDGEIGEDMEKKFEKDIQILTDKYCKIADDVSSVKEKEV 180 >gi|219681604|ref|YP_002467990.1| ribosome recycling factor [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471290|ref|ZP_05635289.1| ribosome recycling factor [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|254809497|sp|B8D931|RRF_BUCA5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|219624447|gb|ACL30602.1| ribosome recycling factor [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 185 Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats. Identities = 72/186 (38%), Positives = 114/186 (61%), Gaps = 1/186 (0%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M ID++ ++RM I ++ ++TGR SP++L + +E +GS PL QV+N+ V Sbjct: 1 MINQIDIK-TRERMEACIQTFHNNISNIKTGRASPTLLHNIYIEYFGSKTPLRQVSNIIV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + L ++V+D + + + + I SNL LNP+++G+ + IP+P TEERR L+KV Sbjct: 60 EDSHTLKINVFDDSITSLIRKSILNSNLDLNPVLQGKDIIIPIPRLTEERRKQLIKVIRG 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE S+I +RNIRRD D +K+ K SED + ++ IQ +T+ IK ID E+K+ Sbjct: 120 DAESSRIQIRNIRRDANDKVKRLLKDKIISEDNEHTSQSKIQIMTNEYIKKIDCILEKKE 179 Query: 181 KEIMHF 186 KE+M F Sbjct: 180 KELMKF 185 >gi|46447510|ref|YP_008875.1| putative ribosome recycling factor (ribosome releasing factor) [Candidatus Protochlamydia amoebophila UWE25] gi|60390257|sp|Q6M9Z9|RRF_PARUW RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|46401151|emb|CAF24600.1| putative ribosome recycling factor (ribosome releasing factor) [Candidatus Protochlamydia amoebophila UWE25] Length = 183 Score = 197 bits (503), Expect = 4e-49, Method: Composition-based stats. Identities = 70/177 (39%), Positives = 110/177 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + K +M I LK D+ +RTGR +P M++ V +E YGS + L VA+++ E R L Sbjct: 4 VDQTKTKMITAIEHLKNDLKNIRTGRANPGMVEHVMIEVYGSPMRLKDVASISAPEARQL 63 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +D + S+ +GI ++NLGL PIV+ +RI +P TEE R + K+ H EK+K Sbjct: 64 LITPFDPQNAGSIGKGIEKANLGLMPIVDAHSVRIKIPPMTEEIRKKMAKICHEEKEKTK 123 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +S+RNIRRD + +K + G +ED++ LE +IQ++TD K D E+K+KEI Sbjct: 124 VSIRNIRRDANELARKQKSEGIIAEDVLKKLEKNIQELTDKFCKEADEIAEKKEKEI 180 >gi|219682161|ref|YP_002468545.1| ribosome recycling factor [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|254809498|sp|B8D7D5|RRF_BUCAT RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|219621894|gb|ACL30050.1| ribosome recycling factor [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311085975|gb|ADP66057.1| ribosome recycling factor [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086549|gb|ADP66630.1| ribosome recycling factor [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 185 Score = 197 bits (503), Expect = 4e-49, Method: Composition-based stats. Identities = 72/186 (38%), Positives = 114/186 (61%), Gaps = 1/186 (0%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M ID++ ++RM I ++ ++TGR SP++L + +E +GS PL QV+N+ V Sbjct: 1 MINQIDIK-TRERMEACIQTFHNNINNIKTGRASPTLLHNIYIEYFGSKTPLRQVSNIIV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + L ++V+D + + + + I SNL LNP+++G+ + IP+P TEERR L+KV Sbjct: 60 EDSHTLKINVFDDSITSLIRKSILNSNLDLNPVLQGKDIIIPIPRLTEERRKQLIKVIRG 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE S+I +RNIRRD D +K+ K SED + ++ IQ +T+ IK ID E+K+ Sbjct: 120 DAESSRIQIRNIRRDANDKVKRLLKDKIISEDNEHTSQSKIQIMTNEYIKKIDCILEKKE 179 Query: 181 KEIMHF 186 KE+M F Sbjct: 180 KELMKF 185 >gi|149196427|ref|ZP_01873482.1| ribosome releasing factor [Lentisphaera araneosa HTCC2155] gi|149140688|gb|EDM29086.1| ribosome releasing factor [Lentisphaera araneosa HTCC2155] Length = 188 Score = 197 bits (503), Expect = 4e-49, Method: Composition-based stats. Identities = 58/180 (32%), Positives = 108/180 (60%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + I ++M I+ + + TG+ +P+++ + V+AYG+ + L + A ++ + R + Sbjct: 9 VDEITEKMDKAIAHFQSQIDAYSTGKATPALVQDIMVDAYGTKMRLKETAGISTPDARTI 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + +D ++ +E+ + +N+G+ P+ +GQ++R+P+PE TE+RR +VK E+ K Sbjct: 69 AIQPYDATILPDIEKALMMANIGITPMNDGQLIRLPIPELTEDRRKDMVKDLKGKGEEHK 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++RNIRR+G D+LKK+ K + SED L DIQ +T+ I I S K+K++M Sbjct: 129 INIRNIRREGNDYLKKALKDHELSEDHQKGLVTDIQDLTNKKIDEIASLSAAKEKDLMTV 188 >gi|51598384|ref|YP_072572.1| ribosome recycling factor [Borrelia garinii PBi] gi|60390245|sp|Q662P1|RRF_BORGA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|51572955|gb|AAU06980.1| ribosome releasing factor [Borrelia garinii PBi] Length = 184 Score = 197 bits (503), Expect = 4e-49, Method: Composition-based stats. Identities = 67/177 (37%), Positives = 108/177 (61%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 + ++M + L + TLRTGR+S ++ D + ++ +G P+ QV+++ + E R++V+ Sbjct: 8 LDEKMSKVLLSLDNEYKTLRTGRISSNVFDKIFIQYHGQKTPITQVSSIRIPEARLVVIQ 67 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 WDK ++ +E+ I S+L +NP +G V+RI VP T ERR +VK A AE+ K+S Sbjct: 68 PWDKTILNKIEQAILNSDLSMNPSSDGSVIRIKVPALTSERRQDIVKHAKKIAEEHKVST 127 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RNIR+D + +KK K + +ED + + +DIQK D IK ID+ E K +EIM Sbjct: 128 RNIRQDLNNKVKKQEKESEITEDSLKRILDDIQKSIDIYIKRIDTILESKIQEIMEV 184 >gi|88855238|ref|ZP_01129903.1| ribosome recycling factor [marine actinobacterium PHSC20C1] gi|88815766|gb|EAR25623.1| ribosome recycling factor [marine actinobacterium PHSC20C1] Length = 183 Score = 197 bits (503), Expect = 4e-49, Method: Composition-based stats. Identities = 56/181 (30%), Positives = 99/181 (54%), Gaps = 4/181 (2%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++M + K D T+RTGR +P++ V V+ YG+ PL Q+A++ E R L Sbjct: 6 LAEASEKMDKALEAAKDDFGTVRTGRANPALFQKVLVDYYGTPTPLQQLASMVNQEARTL 65 Query: 67 VVSVWDKEMVASVERGIH-ESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 +++ +DK + +E+ I +LG + +G V+R +PE TEERR VK+ AE++ Sbjct: 66 IITPFDKTALKDIEKAIAGAHHLGASVGNDGNVIRATLPELTEERRKDFVKIVRDKAEQA 125 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++S+RN+RR D L + ED +A E +++ T + + +D + K+ E++ Sbjct: 126 RVSLRNVRRKAKDDLDAL---TEVGEDEIARAEKELEASTKAHVDAVDDALKRKETELLE 182 Query: 186 F 186 Sbjct: 183 V 183 >gi|15616850|ref|NP_240063.1| ribosome recycling factor [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11134310|sp|P57328|RRF_BUCAI RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|25299706|pir||E84957 ribosome recycling factor [imported] - Buchnera sp. (strain APS) gi|10038914|dbj|BAB12949.1| ribosome recycling factor [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|311087130|gb|ADP67210.1| ribosome recycling factor [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087668|gb|ADP67747.1| ribosome recycling factor [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 185 Score = 197 bits (503), Expect = 5e-49, Method: Composition-based stats. Identities = 72/186 (38%), Positives = 114/186 (61%), Gaps = 1/186 (0%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M ID++ ++RM I ++ ++TGR SP++L + +E +GS PL QV+N+ V Sbjct: 1 MINQIDIK-TRERMEACIQTFHNNITNIKTGRASPTLLHNIYIEYFGSKTPLRQVSNIIV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + L ++V+D + + + + I SNL LNP+++G+ + IP+P TEERR L+KV Sbjct: 60 EDSHTLKINVFDDSITSLIRKSILNSNLDLNPVLQGKDIIIPIPRLTEERRKQLIKVIRG 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE S+I +RNIRRD D +K+ K SED + ++ IQ +T+ IK ID E+K+ Sbjct: 120 DAESSRIQIRNIRRDANDKVKRLLKDKIISEDNEHTSQSKIQIMTNEYIKKIDCILEKKE 179 Query: 181 KEIMHF 186 KE+M F Sbjct: 180 KELMKF 185 >gi|58585062|ref|YP_198635.1| ribosome recycling factor [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|75497580|sp|Q5GRI1|RRF_WOLTR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|58419378|gb|AAW71393.1| Ribosome recycling factor [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 185 Score = 197 bits (502), Expect = 5e-49, Method: Composition-based stats. Identities = 74/177 (41%), Positives = 114/177 (64%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 K+RM TI D+ +RTGR S S+LD + V YG H LNQVA V+V + + L++ Sbjct: 8 KTKERMLKTIQSFYNDIKGIRTGRASASLLDGIVVNIYGGHQKLNQVAGVSVTDNKTLLI 67 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 VWD ++ V+ I +NL LNP+VEG +RI +P+ T+E R LVK+ H +AE ++++ Sbjct: 68 KVWDIGVIGEVKNAILNANLNLNPVVEGNTIRIVLPDLTQETRERLVKLLHQFAENARVA 127 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +RNIRRD M+ +++ +++ K SED + + +IQ ITD IK ID K+K+I++ Sbjct: 128 IRNIRRDIMEEIERMQENKKISEDDFHNAKKEIQNITDDNIKKIDGELSIKEKDILN 184 >gi|219684827|ref|ZP_03539769.1| ribosome recycling factor [Borrelia garinii PBr] gi|219671772|gb|EED28827.1| ribosome recycling factor [Borrelia garinii PBr] Length = 184 Score = 197 bits (502), Expect = 5e-49, Method: Composition-based stats. Identities = 67/177 (37%), Positives = 108/177 (61%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 + ++M + L + TLRTGR+S ++ D + ++ +G P+ QV+++ + E R++V+ Sbjct: 8 LDEKMSKVLLSLDNEYKTLRTGRISSNVFDKIFIQYHGQKTPITQVSSIRIPEARLVVIQ 67 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 WDK ++ +E+ I S+L +NP +G V+RI VP T ERR +VK A AE+ K+S Sbjct: 68 PWDKTILNKIEQAILNSDLSMNPSSDGSVIRIKVPALTNERRQDIVKHAKKIAEEHKVST 127 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RNIR+D + +KK K + +ED + + +DIQK D IK ID+ E K +EIM Sbjct: 128 RNIRQDLNNKVKKQEKESEITEDNLKRILDDIQKSIDIYIKRIDTILESKIQEIMEV 184 >gi|242076314|ref|XP_002448093.1| hypothetical protein SORBIDRAFT_06g020970 [Sorghum bicolor] gi|241939276|gb|EES12421.1| hypothetical protein SORBIDRAFT_06g020970 [Sorghum bicolor] Length = 258 Score = 197 bits (502), Expect = 6e-49, Method: Composition-based stats. Identities = 61/174 (35%), Positives = 95/174 (54%), Gaps = 2/174 (1%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 +M + L +++ LRTGR +P MLD + VE G V LN++A V+VL+ L V Sbjct: 84 ATAQMDAAVIALSRELSKLRTGRATPGMLDHIMVENAGVKVALNRIAVVSVLDAHTLSVM 143 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 +D + S+E I S LG+NP +G + +P T+E AL KV AE K S+ Sbjct: 144 PYDPTSMKSIEHAIISSPLGINPTPDGNRIIAAIPPLTKENIQALCKVVTKSAEDFKQSI 203 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 R R+ +D +KKS + +D V +E +++++T IK+ D + K+KEI Sbjct: 204 RRARQKALDTIKKS--ASSMPKDDVKRIEKEVEELTKKFIKSADDMCKAKEKEI 255 >gi|21672509|ref|NP_660576.1| ribosome recycling factor [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25009151|sp|Q8K9S8|RRF_BUCAP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|21623130|gb|AAM67787.1| ribosome recycling factor [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 185 Score = 197 bits (501), Expect = 7e-49, Method: Composition-based stats. Identities = 71/178 (39%), Positives = 107/178 (60%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 ++M I+ + + +RTGR SP +L+ + VE +GS VPL Q++NV V L + Sbjct: 8 KSNEKMKVCINNFQIQVNNVRTGRASPELLNSIYVEYFGSKVPLRQISNVVVENYHTLKI 67 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 +++D + +++ I SNL LNPI+ G+ + +P+P TEERR L+KV AE ++I Sbjct: 68 NIFDDSSTSLIKKAILNSNLDLNPILYGKDIIVPIPGLTEERRTHLIKVIRNNAENARIY 127 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +RNIRRD D +K KS SED + +N IQ +TD IK ID EK+K++M F Sbjct: 128 IRNIRRDANDKIKNYLKSKIISEDNEHAAQNKIQTMTDDYIKKIDKILSEKEKDLMKF 185 >gi|42561130|ref|NP_975581.1| ribosome recycling factor [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|331703586|ref|YP_004400273.1| ribosome recycling factor [Mycoplasma mycoides subsp. capri LC str. 95010] gi|47116994|sp|P61306|RRF_MYCMS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|42492627|emb|CAE77223.1| ribosome recycling factor [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301321457|gb|ADK70100.1| ribosome recycling factor [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] gi|328802141|emb|CBW54295.1| Ribosome recycling factor [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 182 Score = 197 bits (501), Expect = 8e-49, Method: Composition-based stats. Identities = 71/186 (38%), Positives = 115/186 (61%), Gaps = 4/186 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M +I L+N + +M +TI + +RTG+ S ++LD V V YGS +PLNQ++ +T Sbjct: 1 MTDLI-LKNAELQMKETIDAYVIHLRQIRTGKASGAILDKVMVNYYGSLMPLNQISQITT 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EP ++++ +D+ ++ IH+++LGLNP+ + ++RIP+ TE+ R LVK H Sbjct: 60 PEPNLIIIKPYDRNVITEAVGAIHKADLGLNPVSDATLIRIPIAPLTEDVRKNLVKKVHK 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E KI +RNIRRD +D +KK S+D+++ E+ IQ+ITD IK +D +EK+ Sbjct: 120 ELEGYKIRIRNIRRDAIDEIKKIE---NISKDLISDNEDQIQQITDKFIKQLDDLTKEKE 176 Query: 181 KEIMHF 186 KE+M Sbjct: 177 KELMTI 182 >gi|256384088|gb|ACU78658.1| ribosome recycling factor [Mycoplasma mycoides subsp. capri str. GM12] gi|256384920|gb|ACU79489.1| ribosome recycling factor [Mycoplasma mycoides subsp. capri str. GM12] gi|296455804|gb|ADH22039.1| ribosome recycling factor [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 182 Score = 196 bits (500), Expect = 9e-49, Method: Composition-based stats. Identities = 71/186 (38%), Positives = 115/186 (61%), Gaps = 4/186 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M +I L+N + +M +TI + +RTG+ S ++LD V V YGS +PLNQ++ +T Sbjct: 1 MTDLI-LKNAELQMRETIDAYVIHLRQIRTGKASGAILDKVMVNYYGSLMPLNQISQITT 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EP ++++ +D+ ++ IH+++LGLNP+ + ++RIP+ TE+ R LVK H Sbjct: 60 PEPNLIIIKPYDRNVITEAVGAIHKADLGLNPVSDATLIRIPIAPLTEDVRKNLVKKVHK 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E KI +RNIRRD +D +KK S+D+++ E+ IQ+ITD IK +D +EK+ Sbjct: 120 ELEGYKIRIRNIRRDAIDEIKKIE---NISKDLISDNEDQIQQITDKFIKQLDDLTKEKE 176 Query: 181 KEIMHF 186 KE+M Sbjct: 177 KELMTI 182 >gi|323341770|ref|ZP_08082003.1| ribosome recycling factor [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464195|gb|EFY09388.1| ribosome recycling factor [Erysipelothrix rhusiopathiae ATCC 19414] Length = 181 Score = 196 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 65/173 (37%), Positives = 98/173 (56%), Gaps = 3/173 (1%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M + I + + LR+GR + SML V ++ YGS P+ Q+A ++V+E R LV+ +D Sbjct: 12 MDEVIENFETRLGGLRSGRANVSMLYGVSIDYYGSATPIEQIAQISVVEGRQLVIKPFDP 71 Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIR 133 + +E I+ NLGL +G V+RI VP+ TEE R + K + AE +K++ RN+R Sbjct: 72 SALKEIEHTINNGNLGLLAQNDGTVVRINVPQLTEETRKEVSKQVGSLAEDAKVAARNVR 131 Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RD D +K ED L +D+QK+TD K ID+ ++K KEIM Sbjct: 132 RDLNDEIKNLE---DLPEDQEKRLLDDVQKLTDDITKKIDAISKDKVKEIMTI 181 >gi|219685407|ref|ZP_03540226.1| ribosome recycling factor [Borrelia garinii Far04] gi|219673180|gb|EED30200.1| ribosome recycling factor [Borrelia garinii Far04] Length = 184 Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats. Identities = 67/177 (37%), Positives = 109/177 (61%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 + ++M + L + TLRTGR+S ++ D + ++ +G P+ QV+++ + E R++V+ Sbjct: 8 LDEKMSKVLLSLDNEYKTLRTGRISSNVFDKIFIQYHGQKTPITQVSSIRIPEARLVVIQ 67 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 WDK ++ +E+ I S+L +NP+ +G V+RI VP T ERR +VK A AE+ K+S Sbjct: 68 PWDKTILNKIEQAILNSDLSMNPLSDGSVIRIKVPALTNERRQDIVKHAKKIAEEHKVST 127 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RNIR+D + +KK K + +ED + + +DIQK D IK ID+ E K +EIM Sbjct: 128 RNIRQDLNNKVKKQEKESEITEDNLKRILDDIQKSIDIYIKRIDTILESKIQEIMEV 184 >gi|262277277|ref|ZP_06055070.1| ribosome recycling factor [alpha proteobacterium HIMB114] gi|262224380|gb|EEY74839.1| ribosome recycling factor [alpha proteobacterium HIMB114] Length = 186 Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats. Identities = 82/162 (50%), Positives = 112/162 (69%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ + +M D+I L KD+ T+RTGR SMLDLVKVE YG +P+NQVA +TV +P+ + Sbjct: 7 LKSFEKKMEDSIVSLGKDLSTVRTGRAHSSMLDLVKVEVYGQSMPINQVATITVTDPQTI 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + VWD V E+ I ES+L LNP+++GQ+LRIPVP+ E+RR L K+ + +EK K Sbjct: 67 SIQVWDANNVKFCEKAIRESDLNLNPVIDGQLLRIPVPKLNEDRRKELSKIVNQQSEKIK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDST 168 IS+RN+RR GMD LKK K+ SED L N++QKITD Sbjct: 127 ISIRNVRRTGMDFLKKEEKNKNISEDESKKLSNELQKITDDF 168 >gi|213029166|ref|ZP_03343613.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 136 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 59/135 (43%), Positives = 86/135 (63%) Query: 22 KKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVER 81 + + +RTGR SPS+LD + VE YG+ PL Q+A+VTV + R L ++V+D+ M +VE+ Sbjct: 2 QTQISKVRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMGPAVEK 61 Query: 82 GIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLK 141 I S+LGLNP G +R+P+P TEERR L K+ AE+++++VRN+RRD D +K Sbjct: 62 AIMASDLGLNPSSAGTDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVK 121 Query: 142 KSRKSGKASEDMVAS 156 K SED Sbjct: 122 ALLKDKAISEDDDRR 136 >gi|168705204|ref|ZP_02737481.1| Ribosome recycling factor [Gemmata obscuriglobus UQM 2246] Length = 186 Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 58/179 (32%), Positives = 101/179 (56%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ +DRM + + D+ +RTGR SP MLD ++V+ YG+ P+ VA+VT + + Sbjct: 7 LKDTEDRMEKALDVFRNDLKGMRTGRASPQMLDSLRVDNYGTMSPIRDVASVTCPDAATI 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ + E + +E+ I S+LGL P +G+V+R+ +P + ++R +V AE +K Sbjct: 67 VIKPYAAESLKEIEKAIRSSDLGLAPNNDGKVIRLTMPAMSGDQRKKIVAAVKKSAESAK 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +S RNIRRDG H + + K+ +ED + +Q + ID +K+KE++ Sbjct: 127 VSCRNIRRDGNKHFEDAEKAKTMTEDDRDKGKAKVQDLLKVYEGKIDDLANKKEKEVLE 185 >gi|42520392|ref|NP_966307.1| ribosome recycling factor [Wolbachia endosymbiont of Drosophila melanogaster] gi|47116999|sp|P61311|RRF_WOLPM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|42410130|gb|AAS14241.1| ribosome recycling factor [Wolbachia endosymbiont of Drosophila melanogaster] Length = 185 Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 77/185 (41%), Positives = 116/185 (62%), Gaps = 2/185 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ K+RM TI D+ +RTGR S S+LD + V YG H LNQVA V+V Sbjct: 2 LNEI--KAKTKERMLKTIQSFHDDIKGVRTGRASASLLDGIVVNIYGGHQKLNQVAGVSV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 ++ + L + VWD +V V+ I +NL LNP+VEG +RI +P+ T+E R LVK+ H Sbjct: 60 IDNKTLSIKVWDISVVGEVKNAILNANLNLNPVVEGSTIRIALPDLTQETREKLVKLLHQ 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 +AE ++I++RNIRRD M+ +K +++ + SED + +IQ ITD IK ID K+ Sbjct: 120 FAENARIAIRNIRRDIMEETEKMKENKEISEDDFHGAKKEIQNITDDNIKKIDGELSIKE 179 Query: 181 KEIMH 185 K+I++ Sbjct: 180 KDILN 184 >gi|224534946|ref|ZP_03675515.1| ribosome recycling factor [Borrelia spielmanii A14S] gi|224513886|gb|EEF84211.1| ribosome recycling factor [Borrelia spielmanii A14S] Length = 184 Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 67/177 (37%), Positives = 108/177 (61%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 + ++M + L + TLRTGR++ ++ D + + +G P+ QV+++ + E R++V+ Sbjct: 8 LDEKMSKVLLSLDNEYKTLRTGRINSNIFDKIYINYHGQRTPITQVSSIRIPEARLVVIQ 67 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 WDK ++ +E+ I S+L +NP +G V+RI VP T ERR +VK A AE+ KIS Sbjct: 68 PWDKTILNKIEQAILNSDLSMNPSSDGSVIRIKVPALTSERRQDIVKHAKKIAEEHKIST 127 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RNIR++ + +KK K + +ED + + +DIQK TD IK ID+ E K +EIM Sbjct: 128 RNIRQELKNKVKKQEKESEITEDSLKRILDDIQKSTDLCIKRIDTILESKIQEIMEV 184 >gi|313665273|ref|YP_004047144.1| ribosome recycling factor [Mycoplasma leachii PG50] gi|312949294|gb|ADR23890.1| ribosome recycling factor [Mycoplasma leachii PG50] Length = 182 Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 71/186 (38%), Positives = 115/186 (61%), Gaps = 4/186 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M +I L+N + +M +TI + +RTG+ S ++LD V V YGS +PLNQ++ +T Sbjct: 1 MTDLI-LKNAELQMKETIDAYVIHLRQIRTGKASGAILDKVMVNYYGSLMPLNQISQITT 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EP ++++ +D+ ++ IH+++LGLNP+ + ++RIP+ TE+ R LVK H Sbjct: 60 PEPNLIIIKPYDRNVITEAVGAIHKADLGLNPVSDATLIRIPIAPLTEDVRKNLVKKVHK 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E KI +RNIRRD +D +KK S+D+++ E+ IQ+ITD IK +D +EK+ Sbjct: 120 ELEGYKIRIRNIRRDAIDEIKKIE---NISKDLISDNEDKIQQITDKFIKQLDDLTKEKE 176 Query: 181 KEIMHF 186 KE+M Sbjct: 177 KELMKI 182 >gi|147840489|emb|CAN68423.1| hypothetical protein VITISV_018268 [Vitis vinifera] Length = 258 Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats. Identities = 58/178 (32%), Positives = 98/178 (55%), Gaps = 2/178 (1%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N +M + L +++ LRTGR S MLD + VE G +PL+++A V+VL+P+ L Sbjct: 82 ENAMSQMDAAVVALSRELSKLRTGRASAGMLDHIIVETGGVKMPLSRLAVVSVLDPKTLS 141 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+ +D + + +E I S LGLNP +G+ L +P T+E A+ KV E K Sbjct: 142 VTPYDLDALKQLENAIVSSPLGLNPKADGERLIAVIPPLTKEHIQAMCKVVAKSCEDVKQ 201 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 S+R R+ +D +KK+ +D+ LE ++ ++T +K+ + + K+KEI Sbjct: 202 SIRRARQKALDXIKKA--GSSLPKDVAKRLEKEVDELTKKFVKSAEDMCKAKEKEIAE 257 >gi|225452150|ref|XP_002263449.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|296090242|emb|CBI40061.3| unnamed protein product [Vitis vinifera] Length = 258 Score = 194 bits (495), Expect = 3e-48, Method: Composition-based stats. Identities = 58/178 (32%), Positives = 98/178 (55%), Gaps = 2/178 (1%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +N +M + L +++ LRTGR S MLD + VE G +PL+++A V+VL+P+ L Sbjct: 82 ENAMSQMDAAVVALSRELSKLRTGRASAGMLDHIIVETGGVKMPLSRLAVVSVLDPKTLS 141 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+ +D + + +E I S LGLNP +G+ L +P T+E A+ KV E K Sbjct: 142 VTPYDLDALKQLENAIVSSPLGLNPKADGERLIAVIPPLTKEHIQAMCKVVAKSCEDVKQ 201 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 S+R R+ +D +KK+ +D+ LE ++ ++T +K+ + + K+KEI Sbjct: 202 SIRRARQKALDMIKKA--GSSLPKDVAKRLEKEVDELTKKFVKSAEDMCKAKEKEIAE 257 >gi|255071971|ref|XP_002499660.1| ribosome recycling factor [Micromonas sp. RCC299] gi|226514922|gb|ACO60918.1| ribosome recycling factor [Micromonas sp. RCC299] Length = 299 Score = 194 bits (495), Expect = 3e-48, Method: Composition-based stats. Identities = 66/180 (36%), Positives = 98/180 (54%), Gaps = 4/180 (2%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D + M I L++D+ LRTGR SP ML+ + V+AYG H PL + +VT P+ Sbjct: 122 FDPAAFEQLMESAIEALERDLGKLRTGRASPGMLENLVVQAYGDHTPLQHLGSVTARNPQ 181 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 L V ++D + A+V I +S LG NP +G L +PVPE + + + K+A E Sbjct: 182 TLAVMLYDASLKAAVAAAIRDSPLGFNPREDGDTLVVPVPEMNADVKREVAKMAAKAGET 241 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +KISVRN R+ GMD +K+++ ED E ++QK D+ +K K+K IM Sbjct: 242 AKISVRNARKKGMDAIKRAK----MPEDEAKRAEKEVQKSHDAFVKRCQDLTVAKEKAIM 297 >gi|330968958|gb|EGH69024.1| ribosome recycling factor [Pseudomonas syringae pv. aceris str. M302273PT] Length = 161 Score = 194 bits (494), Expect = 5e-48, Method: Composition-based stats. Identities = 62/162 (38%), Positives = 94/162 (58%), Gaps = 2/162 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ ++ + RM ++ L +RTG+ PS+L V V YG+ PL+QVANVTV Sbjct: 2 INEI--KKDAQTRMQKSLESLTHAFTRIRTGKAHPSILGGVMVPYYGADTPLSQVANVTV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R L V +++ M+A+V++ I S LG NP G++L I +P TEE R K A Sbjct: 60 KDSRTLQVVAFERNMLAAVDKAIQSSGLGFNPTNLGELLLISMPALTEETRKGFTKQARD 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQ 162 AE ++++VRNIRRD + LK K + SED +D+Q Sbjct: 120 AAEDARVAVRNIRRDALSQLKDLVKEKEISEDEERRAADDVQ 161 >gi|326532442|dbj|BAK05150.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 260 Score = 194 bits (493), Expect = 6e-48, Method: Composition-based stats. Identities = 61/174 (35%), Positives = 94/174 (54%), Gaps = 2/174 (1%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 +M + L +++ LRTGR SP MLD + VE V L+++A V+VL+ L V Sbjct: 86 ATAQMDTAVVALSRELSKLRTGRASPGMLDHIMVETGDVKVGLSRIAVVSVLDSHTLSVM 145 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 +D + S+E I S LG+NP +G + VP T+E A+ KV AE K S+ Sbjct: 146 PYDPNTMKSIENAIASSPLGINPTPDGSRIIAAVPPLTKETMQAMCKVVTKSAEDFKQSI 205 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 R R+ +D +KKS S +D + LE +++++T IK+ D + K+KEI Sbjct: 206 RRARQKALDTIKKS--SSSMPKDDIKRLEKEVEELTKKFIKSADDMCKAKEKEI 257 >gi|71892056|ref|YP_277786.1| ribosome recycling factor [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|123641045|sp|Q493C9|RRF_BLOPB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|71796162|gb|AAZ40913.1| ribosome recycling factor [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 188 Score = 194 bits (493), Expect = 6e-48, Method: Composition-based stats. Identities = 71/187 (37%), Positives = 115/187 (61%), Gaps = 1/187 (0%) Query: 1 MNQVIDLQ-NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVT 59 +N++ ++Q + + M I K ++ + GR+SP++L+ ++V+ YG PL+QVAN Sbjct: 2 INKIDNIQTDSEIHMKKCIKNFKTNINNIHIGRISPNILNNIRVDYYGISTPLSQVANAI 61 Query: 60 VLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 V + R L ++V+D +++ S E+ I S+L L PI G +R+ +P TEERR L+K+ Sbjct: 62 VEDSRTLAITVFDHQLIKSTEKAIFMSDLELIPISYGNTIRVTLPALTEERRHTLIKMVR 121 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 AEKSKI+VR++RR D K K+ + +ED +N+IQK+T+ IK ID EK Sbjct: 122 TEAEKSKIAVRSVRRIANDKTKILLKNKEINEDEEHFFQNEIQKLTNIWIKEIDIILAEK 181 Query: 180 KKEIMHF 186 + E+M F Sbjct: 182 ESELMKF 188 >gi|297891|emb|CAA51077.1| nuclear located protein [Daucus carota] Length = 167 Score = 194 bits (493), Expect = 7e-48, Method: Composition-based stats. Identities = 61/155 (39%), Positives = 96/155 (61%) Query: 32 RVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLN 91 R +P MLD +KVE YG+ L +A ++ + L+V+ +DK + +E+ I S+LG+ Sbjct: 13 RSNPDMLDKIKVEYYGTPTSLKSIAQISTPDSSSLLVNPYDKSSLKDIEKAIVNSDLGIT 72 Query: 92 PIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASE 151 P +G V+R+ +P+ T +RR L K+ AE+ K+++RNIRRD + K K K SE Sbjct: 73 PNNDGDVIRLSIPQLTADRRKELSKIVAKQAEEGKVALRNIRRDAIKSYDKLEKEKKLSE 132 Query: 152 DMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 D V L +D+QK+ D IK +DS F++K+KE+M Sbjct: 133 DNVKDLSSDLQKVIDEYIKKVDSIFKQKEKELMTV 167 >gi|83319658|ref|YP_424359.1| ribosome recycling factor [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|123535777|sp|Q2SSA4|RRF_MYCCT RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|83283544|gb|ABC01476.1| ribosome recycling factor [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 182 Score = 194 bits (493), Expect = 7e-48, Method: Composition-based stats. Identities = 71/186 (38%), Positives = 115/186 (61%), Gaps = 4/186 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M +I L+N + +M +TI + +RTG+ S ++LD V V YGS +PLNQ++ +T Sbjct: 1 MTDLI-LKNAELQMKETIDAYVIHLRQIRTGKASGAILDKVMVNYYGSLMPLNQISQITT 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EP ++++ +D+ ++ IH+++LGLNPI + ++RIP+ TE+ R LVK H Sbjct: 60 PEPNLIIIKPYDRNVITEAVGAIHKADLGLNPISDATLIRIPIAPLTEDVRKNLVKKVHK 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E KI +RNIRRD +D +KK S+D+++ E+ IQ+ITD IK +D +EK+ Sbjct: 120 ELEGYKIRIRNIRRDAIDEIKKVE---NISKDLISDNEDKIQQITDKFIKQLDDLTKEKE 176 Query: 181 KEIMHF 186 +E+M Sbjct: 177 RELMTI 182 >gi|225677380|ref|ZP_03788350.1| ribosome releasing factor [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590588|gb|EEH11845.1| ribosome releasing factor [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 185 Score = 193 bits (492), Expect = 8e-48, Method: Composition-based stats. Identities = 76/185 (41%), Positives = 116/185 (62%), Gaps = 2/185 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ K+RM TI D+ +RTGR S S+LD + V YG H LNQVA V+V Sbjct: 2 LNEI--KAKTKERMLKTIQSFHDDIKGVRTGRASASLLDGIVVNIYGGHQKLNQVAGVSV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 ++ + L + +WD +V V+ I +NL LNP+VEG +RI +P+ T+E R LVK+ H Sbjct: 60 IDNKTLSIKIWDINVVGEVKNAILNANLNLNPVVEGNTIRIALPDLTQETREKLVKLLHQ 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 +AE ++I++RNIRRD M+ +K +++ + SED + +IQ ITD IK ID K+ Sbjct: 120 FAENARIAIRNIRRDIMEETEKMKENKEISEDDFHGAKKEIQNITDDNIKKIDGELSIKE 179 Query: 181 KEIMH 185 K+I++ Sbjct: 180 KDILN 184 >gi|33519739|ref|NP_878571.1| ribosome recycling factor [Candidatus Blochmannia floridanus] gi|39932111|sp|Q7VRE3|RRF_BLOFL RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|33504084|emb|CAD83345.1| ribosome recycling factor [Candidatus Blochmannia floridanus] Length = 188 Score = 193 bits (492), Expect = 8e-48, Method: Composition-based stats. Identities = 69/188 (36%), Positives = 111/188 (59%), Gaps = 2/188 (1%) Query: 1 MNQVID--LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 M+ +ID +++ M I K ++ + GR+SP +L +K+E YG PL Q+ N Sbjct: 1 MSDIIDDFQKDVTINMQKCIDNFKININKIHVGRISPDILSFIKIEYYGVITPLCQLTNT 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 V +PR L+++V+D M+ +E+ I ESNLG P+ G +R+ P TE RR +L+K+ Sbjct: 61 VVEQPRTLIITVFDSSMIKFIEKAILESNLGCTPVSTGNTIRVTFPTLTESRRYSLIKMV 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 + +EKSK+ +RNIRR D LK ++ + ++D +N+IQ +TD IK I +E Sbjct: 121 RSESEKSKVLIRNIRRVSNDKLKTFLRNKEINKDNEHYFQNEIQNLTDIWIKKIILITKE 180 Query: 179 KKKEIMHF 186 K+ E+M F Sbjct: 181 KELELMKF 188 >gi|153820605|ref|ZP_01973272.1| ribosome recycling factor [Vibrio cholerae NCTC 8457] gi|126508852|gb|EAZ71446.1| ribosome recycling factor [Vibrio cholerae NCTC 8457] Length = 148 Score = 193 bits (492), Expect = 9e-48, Method: Composition-based stats. Identities = 61/147 (41%), Positives = 95/147 (64%), Gaps = 2/147 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ ++ ++RM ++ LK + +RTGR PS+L + V+ YG+ PLNQVANV Sbjct: 2 INEI--KKDAQERMEKSVEALKNGLSKIRTGRAHPSLLTGISVDYYGAPTPLNQVANVIA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R L ++V+D+E+ VE+ I S+LGLNP+ G ++R+P+P TEERR LVK+ Sbjct: 60 EDARTLAITVFDRELTQKVEKAILMSDLGLNPMSAGTIIRVPLPPLTEERRRDLVKIVRG 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSG 147 AE +++VRNIRRD + LK K+ Sbjct: 120 EAEGGRVAVRNIRRDANNDLKALLKTK 146 >gi|171920586|ref|ZP_02695872.2| ribosome recycling factor [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|185179028|ref|ZP_02555297.2| ribosome recycling factor [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024068|ref|ZP_02569849.2| ribosome recycling factor [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518344|ref|ZP_02556270.2| ribosome recycling factor [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524301|ref|ZP_02557887.2| ribosome recycling factor [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867937|ref|ZP_03079935.1| ribosome recycling factor [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273305|ref|ZP_03205841.1| ribosome recycling factor [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225550912|ref|ZP_03771861.1| ribosome recycling factor [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551642|ref|ZP_03772588.1| ribosome recycling factor [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|171903292|gb|EDT49581.1| ribosome recycling factor [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184209122|gb|EDU06165.1| ribosome recycling factor [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188019107|gb|EDU57147.1| ribosome recycling factor [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188997968|gb|EDU67065.1| ribosome recycling factor [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659871|gb|EDX53251.1| ribosome recycling factor [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660414|gb|EDX53673.1| ribosome recycling factor [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198249825|gb|EDY74605.1| ribosome recycling factor [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225379457|gb|EEH01822.1| ribosome recycling factor [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225380066|gb|EEH02428.1| ribosome recycling factor [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 183 Score = 193 bits (492), Expect = 9e-48, Method: Composition-based stats. Identities = 63/186 (33%), Positives = 103/186 (55%), Gaps = 3/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 MN I I++ + ++ + + LRTGR +P++LD + V+ YGS P+NQ+AN++V Sbjct: 1 MNFKIYETKIREEFELVLKWMHNEFIKLRTGRATPAILDGILVDYYGSMTPINQLANISV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPR+L + +D+ + V I+ SNLG+NP V+ ++R+ TEE R L K A Sbjct: 61 PEPRVLAIKPYDRSSIKDVASAINASNLGVNPQVDVDIIRLTFAAPTEEVRKNLAKKAKQ 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E++KI VR+IR++ D K K ED + ++ +T K I++ K+ Sbjct: 121 VGEEAKIRVRHIRQEAQDLFK---KDSSTVEDDKKFFQTELDNLTKELNKEIEAVVSHKE 177 Query: 181 KEIMHF 186 K+IM Sbjct: 178 KDIMTV 183 >gi|332832790|ref|XP_520237.3| PREDICTED: ribosome-recycling factor, mitochondrial isoform 7 [Pan troglodytes] Length = 336 Score = 193 bits (491), Expect = 9e-48, Method: Composition-based stats. Identities = 59/184 (32%), Positives = 101/184 (54%), Gaps = 3/184 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 +I+L+ + + M I LK + R SP LD + V + LNQ++ +++ Sbjct: 154 EDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMK 213 Query: 62 EPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 P++++V++ E A+ + I ES + LNP VEG ++R+P+P+ T E R LVK+A Sbjct: 214 SPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPQVTREHREMLVKLAKQ 273 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 K+K S+R +R + M+ LKKS+ SED + +E I ++ D T+ +D K Sbjct: 274 NTNKAKDSLRKVRTNSMNKLKKSK--YTVSEDTIRLIEKQISQMADDTVAELDRHLAVKT 331 Query: 181 KEIM 184 KE++ Sbjct: 332 KELL 335 >gi|189219823|ref|YP_001940464.1| Ribosome recycling factor [Methylacidiphilum infernorum V4] gi|238692086|sp|B3DXF7|RRF_METI4 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|189186681|gb|ACD83866.1| Ribosome recycling factor [Methylacidiphilum infernorum V4] Length = 186 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 67/180 (37%), Positives = 112/180 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++M + ++++ +LR+G+ P +L V VEAY +H+ L +A +T + +L Sbjct: 7 LLEAEEKMEKAVEKTRQELASLRSGKAHPEILSNVSVEAYETHMKLKDLAAITAPDANLL 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V WD +V S+ + I ES LGLNPIV+ +++RIP+P +EERRL L++VA +E+ + Sbjct: 67 IVQPWDLTLVDSIRKAIEESKLGLNPIVDAKLIRIPIPPLSEERRLELIRVARKISEEGR 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 + +R +RR ++ LKK K SED + E +IQK+TD I+ ID K+K++M Sbjct: 127 VGIRAVRRHCLEELKKLEKEAHLSEDELERAEKEIQKLTDEYIEKIDRILAAKEKDLMKV 186 >gi|119607926|gb|EAW87520.1| mitochondrial ribosome recycling factor, isoform CRA_a [Homo sapiens] gi|119607929|gb|EAW87523.1| mitochondrial ribosome recycling factor, isoform CRA_a [Homo sapiens] Length = 336 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 59/184 (32%), Positives = 102/184 (55%), Gaps = 3/184 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 +I+L+ + + M I LK + R SP LD + V + LNQ++ +++ Sbjct: 154 EDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMK 213 Query: 62 EPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 P++++V++ E A+ + I ES + LNP VEG ++R+P+P+ T E R LVK+A Sbjct: 214 SPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPQVTREHREMLVKLAKQ 273 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 K+K S+R +R + M+ LKKS+ + SED + +E I ++ D T+ +D K Sbjct: 274 NTNKAKDSLRKVRTNSMNKLKKSKDT--VSEDTIRLIEKQISQMADDTVAELDRHLAVKT 331 Query: 181 KEIM 184 KE++ Sbjct: 332 KELL 335 >gi|297270213|ref|XP_001089220.2| PREDICTED: ribosome-recycling factor, mitochondrial isoform 1 [Macaca mulatta] Length = 336 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 59/184 (32%), Positives = 101/184 (54%), Gaps = 3/184 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 +I+L+ + + M I LK + R SP LD + V + LNQ+ +++ Sbjct: 154 EDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQIGQISMK 213 Query: 62 EPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 P++++V++ E A+ + I ES + LNP VEG ++R+P+P+ T E R LVK+A Sbjct: 214 SPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGMLIRVPIPQVTREHRETLVKLAKQ 273 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 K+K S+R +R + M+ LKKS+ + SED + +E I ++ D T+ +D K Sbjct: 274 NTNKAKDSLRKVRTNAMNKLKKSKDT--VSEDTIRLVEKQISQMADDTVAELDRHLAVKT 331 Query: 181 KEIM 184 KE++ Sbjct: 332 KELL 335 >gi|58698901|ref|ZP_00373766.1| ribosome recycling factor [Wolbachia endosymbiont of Drosophila ananassae] gi|225630154|ref|YP_002726945.1| ribosome releasing factor [Wolbachia sp. wRi] gi|254809543|sp|C0R2L2|RRF_WOLWR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|58534582|gb|EAL58716.1| ribosome recycling factor [Wolbachia endosymbiont of Drosophila ananassae] gi|225592135|gb|ACN95154.1| ribosome releasing factor [Wolbachia sp. wRi] Length = 185 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 76/185 (41%), Positives = 117/185 (63%), Gaps = 2/185 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ K+RM TI D+ +RTGR S S+LD + V YG H LNQVA V+V Sbjct: 2 LNEI--KAKTKERMLKTIQSFHDDIKGVRTGRASASLLDGIVVNIYGGHQKLNQVAGVSV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 ++ + L + +WD +V V+ I +NL LNP+VEG +RI +P+ T+E R LVK+ H Sbjct: 60 IDNKTLSIKIWDINVVGEVKNAILNANLNLNPVVEGNTIRIALPDLTQETREKLVKLLHQ 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 +AE ++I++RNIRRD M+ +K +++ + SED + +IQ ITD+ IK ID K+ Sbjct: 120 FAENARIAIRNIRRDIMEETEKMKENKEISEDDFHGAKKEIQNITDNNIKKIDGELSIKE 179 Query: 181 KEIMH 185 K+I++ Sbjct: 180 KDILN 184 >gi|149738437|ref|XP_001501480.1| PREDICTED: similar to mitochondrial ribosome recycling factor [Equus caballus] Length = 336 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 60/184 (32%), Positives = 102/184 (55%), Gaps = 3/184 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 +I L+ + + M + LK + R SP LD + V + LNQ+ +++ Sbjct: 154 EDIISLEEVDEEMKSVMEALKDNFNKTVNIRTSPGSLDHITVVTADGKLALNQIGQISMK 213 Query: 62 EPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 P++++V++ E A+ + I ES + LNP VEG ++R+P+P+ T E R LVK+A Sbjct: 214 SPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPKVTREHREMLVKLAKQ 273 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 K+K S+R +R + M+ LKKS+ KASED + +E I ++ D T+ +D + K Sbjct: 274 NTNKAKDSLRKVRTNAMNKLKKSK--DKASEDTIRLIEKQISQMADDTVAELDRYLAVKT 331 Query: 181 KEIM 184 KE++ Sbjct: 332 KELL 335 >gi|88607028|ref|YP_504740.1| ribosome recycling factor [Anaplasma phagocytophilum HZ] gi|88598091|gb|ABD43561.1| ribosome recycling factor [Anaplasma phagocytophilum HZ] Length = 184 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 71/175 (40%), Positives = 108/175 (61%), Gaps = 1/175 (0%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 ++RM T + D+ +RTGRVS S+LD + V YG+ V LN V++++V R L+VS Sbjct: 10 AQERMDKTYAMFLNDISGIRTGRVSASLLDGISVSYYGNKVKLNTVSSISV-NGRTLLVS 68 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 +WD ++ V+ I SN+G E +R+ VPE T + R LVK+ + AE+SK+S+ Sbjct: 69 LWDASILGEVKSAIEASNMGFGMTCESSTVRLVVPELTNDVRKNLVKMLNKLAEESKVSI 128 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RNIRRD ++ LK + + + SED + + +IQKITDS IK I + K+ EI+ Sbjct: 129 RNIRRDAIERLKSLQDNKEISEDDMHGVSAEIQKITDSFIKKIADAYTSKESEIL 183 >gi|332229921|ref|XP_003264135.1| PREDICTED: ribosome-recycling factor, mitochondrial-like isoform 1 [Nomascus leucogenys] Length = 336 Score = 192 bits (490), Expect = 1e-47, Method: Composition-based stats. Identities = 59/184 (32%), Positives = 102/184 (55%), Gaps = 3/184 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 +I+L+ + + M I LK + R SP LD + V + LNQ++ +++ Sbjct: 154 EDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMK 213 Query: 62 EPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 P++++V++ E A+ + I ES + LNP VEG ++R+P+P+ T E R LVK+A Sbjct: 214 SPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPQVTREHREMLVKLAKQ 273 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 K+K S+R +R + M+ LKKS+ + SED + +E I ++ D T+ +D K Sbjct: 274 NTNKAKDSLRKVRTNSMNKLKKSKDT--VSEDTIRLIEKQISQMADDTVAELDRHLAVKT 331 Query: 181 KEIM 184 KE++ Sbjct: 332 KELL 335 >gi|212551111|ref|YP_002309428.1| ribosome recycling factor [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549349|dbj|BAG84017.1| ribosome recycling factor [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 184 Score = 192 bits (490), Expect = 1e-47, Method: Composition-based stats. Identities = 65/180 (36%), Positives = 111/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +++ + +M T++ L++ + +R G+ S +LD +K+E YG+ VPL+ VAN+++L+ + + Sbjct: 5 MEHSEKKMLHTLTHLEEVLSRIRAGKASTHILDGIKIEYYGNVVPLSNVANISILDAKTI 64 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + W+K M+ +E+ I +S++G+ P G+++R+ +P TEERR LVK + EK+K Sbjct: 65 TILAWEKAMMKPIEKAIQDSDIGITPENNGELVRLNIPPLTEERRKQLVKQSKGEVEKAK 124 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 + +RNIRR+ D +KK K G SED E QK+ D +K ID K K+IM Sbjct: 125 VGIRNIRRETNDMIKKFVKEGIFSEDEGKKTELATQKLHDKFLKKIDKVLIAKVKDIMTV 184 >gi|209554340|ref|YP_002284960.1| ribosome recycling factor [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|226749944|sp|B5ZC20|RRF_UREU1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|209541841|gb|ACI60070.1| ribosome recycling factor [Ureaplasma urealyticum serovar 10 str. ATCC 33699] Length = 183 Score = 192 bits (490), Expect = 1e-47, Method: Composition-based stats. Identities = 63/186 (33%), Positives = 104/186 (55%), Gaps = 3/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 MN I I++ + ++ + + LRTGR +P++LD + V+ YGS P+NQ+AN++V Sbjct: 1 MNFKIYETKIREEFELVLKWMHNEFIKLRTGRATPAILDGILVDYYGSMTPINQLANISV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPR+L + +D+ + V I+ SNLG+NP V+ ++R+ TEE R L K A Sbjct: 61 PEPRVLAIKPYDRSSIKDVASAINASNLGVNPQVDVDIIRLTFAAPTEEVRKNLAKKAKQ 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E++KI VR+IR++ D K K+ ED + ++ +T K I++ K+ Sbjct: 121 VGEEAKIRVRHIRQEAQDLFK---KNSSTVEDDKKFFQTELDNLTKELNKEIEAVVSHKE 177 Query: 181 KEIMHF 186 K+IM Sbjct: 178 KDIMTV 183 >gi|168031675|ref|XP_001768346.1| predicted protein [Physcomitrella patens subsp. patens] gi|162680524|gb|EDQ66960.1| predicted protein [Physcomitrella patens subsp. patens] Length = 192 Score = 192 bits (490), Expect = 1e-47, Method: Composition-based stats. Identities = 64/177 (36%), Positives = 100/177 (56%), Gaps = 4/177 (2%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + M ++ L ++ LRTGR +P MLD V V ++G PL+ VA V+V L Sbjct: 17 ETASRLMEAALNALSVELSKLRTGRATPGMLDHVNVMSHGVQTPLSHVAAVSVSNLETLT 76 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +D MV VE+ I S L LNP+ EG+VLR+P+P+ T+E + K+ E +K+ Sbjct: 77 VMPYDTSMVKEVEKAIRNSPLKLNPMAEGEVLRVPIPKLTKEHIQTMSKLVGKAGETAKL 136 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 SVR R+D MD + K G S+D V E +++ +T +K+++ + K+KEI+ Sbjct: 137 SVRRARKDAMDIISK----GGYSKDEVKRFEKEVEDVTKKYVKSVEEACKSKEKEIL 189 >gi|50345004|ref|NP_001002174.1| ribosome-recycling factor, mitochondrial [Danio rerio] gi|49256675|gb|AAH74048.1| Mitochondrial ribosome recycling factor [Danio rerio] Length = 257 Score = 192 bits (490), Expect = 1e-47, Method: Composition-based stats. Identities = 66/184 (35%), Positives = 109/184 (59%), Gaps = 3/184 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 +I L+ +K+ M ++ LK D + R SP LD + V PLNQ+ +++ Sbjct: 75 EDIISLEEVKEDMAAVLAALKDDFSRNLSVRTSPGALDHITVTTKDGKFPLNQLGQISMK 134 Query: 62 EPRMLVVSV-WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 P++LVV++ E + +V R + ES++GLNP VEG ++R+PVP+ T E R LVK+A Sbjct: 135 SPQLLVVNMTGFPEAMVAVTRALRESSMGLNPEVEGTIIRVPVPKVTREHRENLVKLAKQ 194 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 ++ KSK S+R +R + + +KKS+ + S+D + +E IQ++TDS +ID K Sbjct: 195 FSNKSKDSLRRVRSNAISQVKKSKDA--VSDDTIHLIEKQIQQMTDSFTADIDKQLATKT 252 Query: 181 KEIM 184 KE++ Sbjct: 253 KELL 256 >gi|226508144|ref|NP_001149112.1| LOC100282734 [Zea mays] gi|195624822|gb|ACG34241.1| ribosome recycling factor [Zea mays] gi|238015350|gb|ACR38710.1| unknown [Zea mays] Length = 259 Score = 192 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 61/174 (35%), Positives = 94/174 (54%), Gaps = 2/174 (1%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 +M + L +++ LRTGR +P MLD + VE V LN++A V+VL+ L V Sbjct: 85 ATAQMDAAVIALSRELSKLRTGRATPGMLDHIMVENADVKVALNRIAVVSVLDAHTLSVM 144 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 +D + S+E I S LG+NP +G + +P T+E AL KV AE K S+ Sbjct: 145 PYDPTSMKSIEHAIISSPLGINPTPDGNRIIAAIPPLTKENIQALCKVVTKSAEDFKQSI 204 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 R R+ +D +KKS + +D V +E +I+++T IK+ D + K+KEI Sbjct: 205 RRARQKALDTIKKS--ASSMPKDDVKRIEKEIEELTKKFIKSSDDMCKAKEKEI 256 >gi|309389219|gb|ADO77099.1| ribosome recycling factor [Halanaerobium praevalens DSM 2228] Length = 185 Score = 192 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 66/180 (36%), Positives = 107/180 (59%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + + +M + K+D+ T+RTGR PS++ +K YG P+ Q+A V E R + Sbjct: 6 MNETEKKMEKGLEKTKEDLNTIRTGRARPSLVQNIKANNYGVATPIQQMAKVFAPEARQI 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ WDK + ++E+ I + NLGL P +G V+RI +P+ TEERR LVK+ H AEK + Sbjct: 66 VIEPWDKNNIETIEKAIMQENLGLTPSNDGSVIRINIPQLTEERRKELVKILHEKAEKGR 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++R IRR+ + L+ G+ SED + ++Q++TD I +D ++K++EIM Sbjct: 126 IAIRAIRREANEELELLEDEGEISEDNMHRGLENVQELTDEYIDKLDQIVKKKEEEIMEV 185 >gi|73667372|ref|YP_303388.1| ribosome recycling factor [Ehrlichia canis str. Jake] gi|123614722|sp|Q3YR65|RRF_EHRCJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|72394513|gb|AAZ68790.1| ribosome recycling factor [Ehrlichia canis str. Jake] Length = 185 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 69/179 (38%), Positives = 107/179 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ K+RM T+S D+ +RTGR S+LD + VE YG V LN +++++V + + L+ Sbjct: 7 QDAKNRMEKTLSVYLSDIDGIRTGRARTSVLDGIVVETYGGRVKLNTISSISVSDNKTLM 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + VWD + +++ I SNLG E +R+ VPE T++ R LVK+ +E ++ Sbjct: 67 IKVWDSNNIGAIKTAIMNSNLGFGFSCEATTIRLTVPEMTQDMRKNLVKLLGKISEDCRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 SVRNIRRD MD LK + + + SED + +IQKITD +K I+ F K+KE++ Sbjct: 127 SVRNIRRDIMDKLKVMQDNKEISEDDLRVSGTEIQKITDDVMKKINDAFSSKEKELLQV 185 >gi|50954908|ref|YP_062196.1| ribosome recycling factor [Leifsonia xyli subsp. xyli str. CTCB07] gi|60390246|sp|Q6AEV4|RRF_LEIXX RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|50951390|gb|AAT89091.1| ribosome recycling factor [Leifsonia xyli subsp. xyli str. CTCB07] Length = 186 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 58/188 (30%), Positives = 103/188 (54%), Gaps = 4/188 (2%) Query: 1 MNQVID-LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVT 59 M + D + + RM T+ K+D T+ GR +P++ V V+ YGS PL Q+A + Sbjct: 1 MTVIADVISDASQRMSKTLEAAKEDFGTVSAGRANPALFQKVLVDYYGSPTPLAQLAGLQ 60 Query: 60 VLEPRMLVVSVWDKEMVASVERGIHESN-LGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 E R+L+V+ +DK + +ER I + N +G+++R+ +PE TE+RR VK+ Sbjct: 61 NPEARVLIVTPYDKGALKEIERAIVTMPSMSANVGNDGEIVRVTLPELTEDRRKEFVKIV 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 E +K+++RNIRR D L + G+ +D VA E +++ +T + + +D + Sbjct: 121 RGKGEDAKVAIRNIRRRAKDELDALK--GEVGDDEVARGEKELEALTRTNVDLVDEALKR 178 Query: 179 KKKEIMHF 186 K+ E++ Sbjct: 179 KEAELLEV 186 >gi|319760411|ref|YP_004124349.1| ribosome recycling factor [Candidatus Blochmannia vafer str. BVAF] gi|318039125|gb|ADV33675.1| ribosome recycling factor [Candidatus Blochmannia vafer str. BVAF] Length = 188 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 71/187 (37%), Positives = 117/187 (62%), Gaps = 1/187 (0%) Query: 1 MNQVIDLQ-NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVT 59 +N++ ++Q ++K++M I K ++ + G VSP+ML+ + VE YGS +PL+Q+ N Sbjct: 2 INEICEIQADLKEQMKKCIDSFKINVNKIHVGHVSPNMLNFITVEYYGSVIPLSQLTNSV 61 Query: 60 VLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 V +PR L ++V+D M+ ++E+ I +NLG PI G V+RI +P TE+RR L+K+ Sbjct: 62 VEKPRTLAITVFDASMIKTIEKAILTANLGFTPIAHGNVIRITLPILTEDRRRTLIKMMR 121 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 +EKSKIS+RNIRR D +K K + + D +N+IQ +T+ + I+ +EK Sbjct: 122 IESEKSKISLRNIRRIANDKIKVFLKKKEINVDDEYHRQNEIQNLTNFWVNQINMILKEK 181 Query: 180 KKEIMHF 186 + E+M F Sbjct: 182 ELELMMF 188 >gi|269959131|ref|YP_003328920.1| ribosome recycling factor [Anaplasma centrale str. Israel] gi|269848962|gb|ACZ49606.1| ribosome recycling factor [Anaplasma centrale str. Israel] Length = 183 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 74/175 (42%), Positives = 105/175 (60%), Gaps = 1/175 (0%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 K+RM T S D+ +RTGRVS S+LD V + YG+ V LN VA+++V R L++S Sbjct: 9 AKERMEKTFSMFLSDISGIRTGRVSASLLDGVFLTYYGNKVRLNTVASISV-SGRTLLIS 67 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 +WD ++ V+ I SNLG E +R+ VPE T + R LVK+ E+ K+SV Sbjct: 68 LWDASVLGDVKAAIDASNLGFGMTCEATTIRLVVPELTSDVRKNLVKMLSKLTEEGKVSV 127 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RNIRRD +D LK + + + SED S+ +IQK+TD+ IK I F K+ EI+ Sbjct: 128 RNIRRDTIDKLKSMQDNKEISEDDFHSVSAEIQKVTDTFIKKIGDAFSVKESEIL 182 >gi|160902092|ref|YP_001567673.1| ribosome recycling factor [Petrotoga mobilis SJ95] gi|190360246|sp|A9BJD6|RRF_PETMO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|160359736|gb|ABX31350.1| ribosome recycling factor [Petrotoga mobilis SJ95] Length = 187 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 62/178 (34%), Positives = 106/178 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + +++M T+ + ++ +RTGR + ++ + +KV+ YG P+NQVA ++V E R +V Sbjct: 9 KEAEEKMKKTLEHFEDELKKVRTGRPTTAIFEDIKVDYYGMPTPINQVATLSVGEERTVV 68 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++ WDK+M+ +E+ I+ SN G + I +G V+R+ P T E R LVK E++K+ Sbjct: 69 ITPWDKKMLEPIEKAINSSNFGFHAINDGNVVRVSFPNPTIEERRKLVKAIKEMLEETKV 128 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++RNIRRD + +K+ + G SED E +IQ+I + F+ K+KEIM Sbjct: 129 ALRNIRRDDIKKVKEIKNEGSISEDEAKKFEEEIQEILKENEDEAEKIFQRKEKEIME 186 >gi|297685276|ref|XP_002820221.1| PREDICTED: ribosome-recycling factor, mitochondrial-like [Pongo abelii] Length = 336 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 59/184 (32%), Positives = 102/184 (55%), Gaps = 3/184 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 +I+L+ + + M I LK + R SP LD + V + LNQ++ +++ Sbjct: 154 EDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMK 213 Query: 62 EPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 P++++V++ E A+ + I ES + LNP VEG ++R+P+P+ T E R LVK+A Sbjct: 214 SPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPQVTREHREMLVKLAKQ 273 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 K+K S+R +R + M+ LKKS+ + SED + +E I ++ D T+ +D K Sbjct: 274 NTNKAKDSLRKVRTNSMNKLKKSKDT--VSEDTIRLIEKQISQMADDTVAELDRHLAVKT 331 Query: 181 KEIM 184 KE++ Sbjct: 332 KELL 335 >gi|15834673|ref|NP_296432.1| ribosome recycling factor [Chlamydia muridarum Nigg] gi|270284838|ref|ZP_06194232.1| ribosome recycling factor [Chlamydia muridarum Nigg] gi|270288867|ref|ZP_06195169.1| ribosome recycling factor [Chlamydia muridarum Weiss] gi|301336218|ref|ZP_07224420.1| ribosome recycling factor [Chlamydia muridarum MopnTet14] gi|3122779|sp|P71148|RRF_CHLMU RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|1518663|gb|AAB07072.1| ribosome-releasing factor [Chlamydia muridarum] gi|7190087|gb|AAF38937.1| ribosome recycling factor [Chlamydia muridarum Nigg] Length = 179 Score = 191 bits (487), Expect = 3e-47, Method: Composition-based stats. Identities = 66/177 (37%), Positives = 110/177 (62%), Gaps = 3/177 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + + M ++F +K++ RTG+ P++++ V VE YG+ + L+ +A+++V + R L Sbjct: 3 LTSAEKEMSGVLTFFQKEIRGFRTGKAHPALVETVTVEVYGTTMRLSDIASISVSDTRQL 62 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +D V+++ +GI +NL L PIVEG +RI VPE TEE R ++K +E++K Sbjct: 63 LISPYDAGNVSAISKGILAANLNLQPIVEGATVRINVPEPTEEYRREVIKQLKRKSEEAK 122 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +S+RNIRR D LK K +ED V LE IQ++TD K I+ ++K+ E+ Sbjct: 123 VSIRNIRRTCNDRLK---KDDSLTEDAVKGLEKKIQELTDKFCKQIEELAKQKEAEL 176 >gi|171910236|ref|ZP_02925706.1| ribosome recycling factor [Verrucomicrobium spinosum DSM 4136] Length = 188 Score = 191 bits (486), Expect = 4e-47, Method: Composition-based stats. Identities = 68/182 (37%), Positives = 111/182 (60%), Gaps = 2/182 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDL--VKVEAYGSHVPLNQVANVTVLEPR 64 L ++ M + + + +RTG+ SP++++ + V +YGS++ L Q+A ++ EPR Sbjct: 7 LLTSEENMTKAVEYAIHEFAAVRTGKASPALVENTDIWVNSYGSNMKLKQLAMISTPEPR 66 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 ++ + +D + +ERGI+ SNLGLNP VEG+V+R+PVPE + ERR +VK AE Sbjct: 67 LIRIEPFDPSTLKDIERGINASNLGLNPSVEGKVIRLPVPELSTERRQQMVKQVKGMAED 126 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++ VR +RR+ M+ LKK K+G +ED + E ++Q TD I ID K+KEI+ Sbjct: 127 ARVRVRAVRRESMEELKKLEKAGTITEDDLHRGEKEVQAFTDKKIAEIDQHVVSKEKEIL 186 Query: 185 HF 186 Sbjct: 187 TV 188 >gi|56416455|ref|YP_153529.1| ribosome recycling factor [Anaplasma marginale str. St. Maries] gi|222474824|ref|YP_002563239.1| ribosome recycling factor (rrf) [Anaplasma marginale str. Florida] gi|254994684|ref|ZP_05276874.1| ribosome recycling factor [Anaplasma marginale str. Mississippi] gi|255002796|ref|ZP_05277760.1| ribosome recycling factor [Anaplasma marginale str. Puerto Rico] gi|255003930|ref|ZP_05278731.1| ribosome recycling factor [Anaplasma marginale str. Virginia] gi|56387687|gb|AAV86274.1| ribosome recycling factor [Anaplasma marginale str. St. Maries] gi|222418960|gb|ACM48983.1| ribosome recycling factor (rrf) [Anaplasma marginale str. Florida] Length = 183 Score = 191 bits (486), Expect = 4e-47, Method: Composition-based stats. Identities = 73/175 (41%), Positives = 105/175 (60%), Gaps = 1/175 (0%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 ++RM T S D+ +RTGRVS S+LD V + YG+ V LN VA+++V R L++S Sbjct: 9 ARERMEKTFSMFLSDISGIRTGRVSASLLDGVFLTYYGNKVRLNTVASISV-SGRTLLIS 67 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 +WD ++ V+ I SNLG E +R+ VPE T + R LVK+ E+ K+SV Sbjct: 68 LWDASVIGDVKAAIDASNLGFGMTCEATTIRLVVPELTSDVRKNLVKMLSKLTEEGKVSV 127 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RNIRRD +D LK + + + SED S+ +IQK+TD+ IK I F K+ EI+ Sbjct: 128 RNIRRDTIDKLKSMQDNKEISEDDFHSISAEIQKVTDTFIKKIGDAFSVKESEIL 182 >gi|13358076|ref|NP_078350.1| ribosome releasing factor [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762287|ref|YP_001752597.1| ribosome recycling factor [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|183508475|ref|ZP_02689468.2| ribosome recycling factor [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701607|ref|ZP_02553656.2| ribosome recycling factor [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|22001956|sp|Q9PPX7|RRF_UREPA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|189044082|sp|B1AJF3|RRF_UREP2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|11277798|pir||F82882 ribosome releasing factor frr UU512 [similarity] - Ureaplasma urealyticum gi|6899513|gb|AAF30925.1|AE002149_10 ribosome releasing factor [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827864|gb|ACA33126.1| ribosome recycling factor [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|182675892|gb|EDT87797.1| ribosome recycling factor [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186700837|gb|EDU19119.1| ribosome recycling factor [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 183 Score = 191 bits (486), Expect = 4e-47, Method: Composition-based stats. Identities = 63/186 (33%), Positives = 104/186 (55%), Gaps = 3/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 MN I I++ + ++ + + LRTGR +P++LD + V YGS +P+NQ+AN++V Sbjct: 1 MNFKIYETKIREEFELVLKWMHNEFIKLRTGRATPAILDGILVNYYGSMMPINQLANISV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPR+L + +D+ + + I+ SNLG+NP V+ ++R+ TEE R LVK A Sbjct: 61 PEPRVLAIKPYDRSSIKDIATAINASNLGVNPQVDVDIIRLTFAAPTEEVRKNLVKKAKQ 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E++KI VR+IR++ D K K ED + ++ +T K I++ K+ Sbjct: 121 VGEEAKIRVRHIRQEAQDLFK---KDSTTIEDDKKFFQTELDNLTKELNKEIETVVSHKE 177 Query: 181 KEIMHF 186 K+IM Sbjct: 178 KDIMTV 183 >gi|88658452|ref|YP_507088.1| ribosome recycling factor [Ehrlichia chaffeensis str. Arkansas] gi|123493752|sp|Q2GHJ5|RRF_EHRCR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|88599909|gb|ABD45378.1| ribosome recycling factor [Ehrlichia chaffeensis str. Arkansas] Length = 185 Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 67/179 (37%), Positives = 107/179 (59%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ K RM ++S D+ +RTGR S+L+ + VE YG V LN +++V+V + + L+ Sbjct: 7 QDAKSRMEKSLSVYLSDIDGIRTGRARTSVLNGIVVETYGGRVKLNTISSVSVSDNKTLM 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + VWD + +++ I SNLG E +R+ VP+ T++ R LVK+ +E ++ Sbjct: 67 IKVWDSNNIGAIKTAIMNSNLGFGISCEATTIRLTVPDMTQDMRKNLVKLLGKISEDCRV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RNIRRD MD LK + S + SED + +IQKITD +K ++ F K+KE++H Sbjct: 127 SIRNIRRDIMDRLKVMQDSKEISEDDLRVAGVEIQKITDDIMKKVNDAFTSKEKELLHV 185 >gi|58337544|ref|YP_194129.1| ribosome recycling factor Rrf [Lactobacillus acidophilus NCFM] gi|58254861|gb|AAV43098.1| ribosome recycling factor Rrf [Lactobacillus acidophilus NCFM] Length = 164 Score = 191 bits (485), Expect = 5e-47, Method: Composition-based stats. Identities = 59/153 (38%), Positives = 99/153 (64%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +D MG +I +K + ++R G + ++LD V+VE YG+ PL Q+++VT+ EPR+L Sbjct: 6 IKKAQDNMGKSIKVYQKKLASVRAGVANAALLDNVQVEYYGAPTPLTQMSSVTIPEPRVL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +D+ + +E + SNLGL P +G+V+R+ +P+ T ERR + K YAE++K Sbjct: 66 LITPYDQNSLDDIEHALLASNLGLTPANDGKVIRLVIPQLTSERREEIAKEVGKYAEEAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLEN 159 I+VRN+RR+ MD LKK K+G +ED Sbjct: 126 IAVRNVRREAMDSLKKEEKNGDITEDEQRKFRK 158 >gi|91201172|emb|CAJ74232.1| similar to ribosome recycling factor (ribosome releasing factor) (RRF) [Candidatus Kuenenia stuttgartiensis] Length = 186 Score = 191 bits (485), Expect = 5e-47, Method: Composition-based stats. Identities = 58/179 (32%), Positives = 104/179 (58%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + K +M I+ L+ D+ +RTGR S +++ ++VE YG+ PL Q+A ++ + + ++ Sbjct: 8 KETKAKMEKVIAHLQDDLKGIRTGRASTGLVENIRVEYYGNPSPLKQLAVISTPDAQSIL 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +D +V+++E+ I +S++GLNP VE + LRI +P EERR L + E +K+ Sbjct: 68 IKPYDTTIVSNIEKAIIQSDIGLNPSVEAKTLRIVIPPLNEERRKKLSVTVKDFGESTKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RNIR+D K +K +ED V +++IQKI ++ + K +EI+ Sbjct: 128 SLRNIRQDSNKQADKEKKENILTEDDVKRTKDEIQKIIKDFETKVNDLIKRKTEEILKV 186 >gi|255349066|ref|ZP_05381073.1| ribosome recycling factor [Chlamydia trachomatis 70] gi|255503604|ref|ZP_05381994.1| ribosome recycling factor [Chlamydia trachomatis 70s] Length = 179 Score = 190 bits (484), Expect = 7e-47, Method: Composition-based stats. Identities = 66/177 (37%), Positives = 110/177 (62%), Gaps = 3/177 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + + M ++F +K+ RTG+ P++++ V VE YG+ + L+ +A+++V + R L Sbjct: 3 LASAEKEMSGVLTFFQKETRGFRTGKAHPALVETVTVEVYGTTMRLSDIASISVSDMRQL 62 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +D V+++ +GI +NL L PIVEG +RI VPE TEE R ++K +E++K Sbjct: 63 LISPYDAGTVSAISKGILAANLNLQPIVEGATVRINVPEPTEEYRREVIKQLKRKSEEAK 122 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +++RNIRR D LK K +ED V SLE IQ++TD K I+ ++K+ E+ Sbjct: 123 VAIRNIRRTFNDRLK---KDDNLTEDAVKSLEKKIQELTDKFCKQIEELTKQKEAEL 176 >gi|184158417|ref|YP_001846756.1| ribosome recycling factor [Acinetobacter baumannii ACICU] gi|183210011|gb|ACC57409.1| Ribosome recycling factor [Acinetobacter baumannii ACICU] Length = 163 Score = 190 bits (484), Expect = 7e-47, Method: Composition-based stats. Identities = 67/156 (42%), Positives = 100/156 (64%), Gaps = 1/156 (0%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM T+ L++ +RTGR PS+L+ V V YGS VPLNQVANV V + R L+ Sbjct: 7 KDSEQRMLKTLESLEQGFAKVRTGRAHPSILNGVMVPYYGSDVPLNQVANVGVEDSRTLI 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V +++ MVA++++ I ES+LGLNPI +R+P+P TEE R + K+A + AE +K+ Sbjct: 67 VQPFERTMVAAIDKAIRESDLGLNPITA-DSIRVPLPALTEETRRDMQKIARSEAENAKV 125 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQK 163 ++RNIRRD + +K K + SED +DI K Sbjct: 126 AIRNIRRDVLGDIKALLKEKEISEDDERRAGDDIPK 161 >gi|255507284|ref|ZP_05382923.1| ribosome recycling factor [Chlamydia trachomatis D(s)2923] gi|289525721|emb|CBJ15202.1| ribosome recycling factor [Chlamydia trachomatis Sweden2] gi|296435291|gb|ADH17469.1| ribosome recycling factor [Chlamydia trachomatis E/150] gi|296439009|gb|ADH21162.1| ribosome recycling factor [Chlamydia trachomatis E/11023] Length = 179 Score = 190 bits (484), Expect = 7e-47, Method: Composition-based stats. Identities = 66/177 (37%), Positives = 110/177 (62%), Gaps = 3/177 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + + M ++F +K+ RTG+ P++++ V VE YG+ + L+ +A+++V + R L Sbjct: 3 LASAEKEMSGVLTFFQKETRGFRTGKAHPALVETVTVEVYGTTMRLSDIASISVSDMRQL 62 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +D V+++ +GI +NL L PIVEG +RI VPE TEE R ++K +E++K Sbjct: 63 LISPYDAGTVSAISKGILAANLNLQPIVEGATVRINVPEPTEEYRREVIKQLKRKSEEAK 122 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +++RNIRR D LK K +ED V SLE IQ++TD K I+ ++K+ E+ Sbjct: 123 VAIRNIRRTFNDRLK---KDDSLTEDAVKSLEKKIQELTDKFCKQIEELAKQKEAEL 176 >gi|171920233|ref|ZP_02690622.2| ribosome recycling factor [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|171902628|gb|EDT48917.1| ribosome recycling factor [Ureaplasma parvum serovar 1 str. ATCC 27813] Length = 183 Score = 190 bits (484), Expect = 7e-47, Method: Composition-based stats. Identities = 63/186 (33%), Positives = 104/186 (55%), Gaps = 3/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 MN I I++ + ++ + + LRTGR +P++LD + V YGS +P+NQ+AN++V Sbjct: 1 MNFKIYETKIREEFELVLKWMHNEFIKLRTGRATPTILDGILVNYYGSMMPINQLANISV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPR+L + +D+ + + I+ SNLG+NP V+ ++R+ TEE R LVK A Sbjct: 61 PEPRVLAIKPYDRSSIKDIATAINASNLGVNPQVDVDIIRLTFAAPTEEVRKNLVKKAKQ 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 E++KI VR+IR++ D K K ED + ++ +T K I++ K+ Sbjct: 121 VGEEAKIRVRHIRQEAQDLFK---KDSTTIEDDKKFFQTELDNLTKELNKEIETVVSHKE 177 Query: 181 KEIMHF 186 K+IM Sbjct: 178 KDIMTV 183 >gi|159478729|ref|XP_001697453.1| predicted protein [Chlamydomonas reinhardtii] gi|158274332|gb|EDP00115.1| predicted protein [Chlamydomonas reinhardtii] Length = 175 Score = 190 bits (484), Expect = 8e-47, Method: Composition-based stats. Identities = 52/178 (29%), Positives = 100/178 (56%), Gaps = 7/178 (3%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 +RM ++ + T+RTGR +P++LD + V+ +G+ PL Q+ VTV + L+++ + Sbjct: 2 ERMKKCLAVVGDGFNTIRTGRANPAILDKITVDYFGAPTPLKQMGTVTVPDASTLMITPF 61 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 DK + +ER I ES++G+NP +G+ +R+ +P T+ RR + +A + ++V Sbjct: 62 DKTSLRDIERAIQESDIGINPNNDGERIRLIMPPMTQVRRRDGAHLV--WAGGAGVAV-- 117 Query: 132 IRRDGMDHLKKSRKSG---KASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++ G K + +D +LE+DIQK+TD+ +K ++ + K +E+M Sbjct: 118 VQACGTSTEKPPHPPPDTVELPKDDKKALEDDIQKLTDTYVKKVEDAAKAKTEEVMKL 175 >gi|166154019|ref|YP_001654137.1| ribosome recycling factor [Chlamydia trachomatis 434/Bu] gi|166154894|ref|YP_001653149.1| ribosome recycling factor [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335219|ref|ZP_07223463.1| ribosome recycling factor [Chlamydia trachomatis L2tet1] gi|238687396|sp|B0B8Q3|RRF_CHLT2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|238687412|sp|B0BAD2|RRF_CHLTB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|165930007|emb|CAP03490.1| ribosome recycling factor [Chlamydia trachomatis 434/Bu] gi|165930882|emb|CAP06444.1| ribosome recycling factor [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 179 Score = 190 bits (483), Expect = 9e-47, Method: Composition-based stats. Identities = 66/177 (37%), Positives = 110/177 (62%), Gaps = 3/177 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + + M ++F +K+ RTG+ P++++ V VE YG+ + L+ +A+++V + R L Sbjct: 3 LASAEKEMAGVLTFFQKETRGFRTGKAHPALVETVTVEVYGTTMRLSDIASISVSDMRQL 62 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +D V+++ +GI +NL L PIVEG +RI VPE TEE R ++K +E++K Sbjct: 63 LISPYDAGTVSAISKGILAANLNLQPIVEGATVRINVPEPTEEYRREVIKQLKRKSEEAK 122 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +++RNIRR D LK K +ED V SLE IQ++TD K I+ ++K+ E+ Sbjct: 123 VAIRNIRRTFNDRLK---KDDNLTEDAVKSLEKKIQELTDKFCKQIEELAKQKEAEL 176 >gi|58617480|ref|YP_196679.1| ribosome recycling factor [Ehrlichia ruminantium str. Gardel] gi|62900774|sp|Q5FG66|RRF_EHRRG RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|58417092|emb|CAI28205.1| Ribosome recycling factor [Ehrlichia ruminantium str. Gardel] Length = 185 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 109/179 (60%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ K+RM T+S D+ +RTGR S+LD + VE YG V LN +++++V + + L+ Sbjct: 7 QDAKNRMEKTLSVYLSDVDGIRTGRARASVLDGIVVETYGGRVKLNTISSISVSDNKTLL 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V VWD V +++ I SNLG EG V+R+ VP+ T++ R LVK+ +E +I Sbjct: 67 VKVWDINNVGAIKTAIINSNLGFGFSCEGAVIRLTVPDMTQDMRKNLVKLLGKISEDCRI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RNIRRD MD LK + + SED + +IQKITD IK I+ F K+KE++H Sbjct: 127 SIRNIRRDIMDKLKIMQDNKDISEDDLRIAGVEIQKITDEIIKKINDTFLAKEKELLHV 185 >gi|29839811|ref|NP_828917.1| ribosome recycling factor [Chlamydophila caviae GPIC] gi|33301547|sp|Q824U6|RRF_CHLCV RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|29834158|gb|AAP04795.1| ribosome recycling factor [Chlamydophila caviae GPIC] Length = 180 Score = 189 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 62/178 (34%), Positives = 111/178 (62%), Gaps = 3/178 (1%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 L + + +M + F K++ + RTG+ +P++++ V V+ YG+ + L+ +A+++V + R Sbjct: 3 SLTDTEKKMAAALEFFHKEVRSFRTGKANPALVETVTVDVYGTTMRLSDLASISVADTRQ 62 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 LV+S +D V+++ +GI +NL L P VEG ++RI VPE T E R ++K +E++ Sbjct: 63 LVISPYDANNVSAISKGIIAANLNLQPDVEGTIVRIKVPEPTAEYRNEVIKQLRRKSEEA 122 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 K+++RNIRR+ D LK K +ED V +E +Q++TD K ID ++K+ E+ Sbjct: 123 KVAIRNIRRESNDKLK---KDSDLTEDAVKGMEKKVQELTDKFCKQIDEITKQKEAEL 177 >gi|145349027|ref|XP_001418942.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144579172|gb|ABO97235.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 238 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 55/180 (30%), Positives = 88/180 (48%), Gaps = 4/180 (2%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 D + + + + L D+ LRT R S M+D + V+ YG PL+ + +T + Sbjct: 61 YDAKEWQSKFDAALHALDVDLSQLRTARASAGMIDHIIVDVYGEPTPLSHLGTITAPNAQ 120 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 L V+++D SVE+ I S LG P L +P+P T++ R + K+A E Sbjct: 121 TLSVTLFDPSTKPSVEKAIVNSPLGFVPKESSDGLIVPIPAMTQDTRKEVCKLASKLGET 180 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +KI+ RNIR +K++ + SED E ++Q +TD + I K+KEIM Sbjct: 181 AKIAARNIRHKAQKRIKRA----EMSEDDRKRAEKNLQALTDDIVGKITQRCAAKEKEIM 236 >gi|57239449|ref|YP_180585.1| ribosome recycling factor [Ehrlichia ruminantium str. Welgevonden] gi|58579425|ref|YP_197637.1| ribosome recycling factor [Ehrlichia ruminantium str. Welgevonden] gi|62900780|sp|Q5HAF9|RRF_EHRRW RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|57161528|emb|CAH58455.1| ribosome recycling factor [Ehrlichia ruminantium str. Welgevonden] gi|58418051|emb|CAI27255.1| Ribosome recycling factor [Ehrlichia ruminantium str. Welgevonden] Length = 185 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 73/179 (40%), Positives = 109/179 (60%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 Q+ K+RM T+S D+ +RTGR S+LD + VE YG V LN +++++V + + L+ Sbjct: 7 QDAKNRMEKTLSVYLSDVDGIRTGRARASVLDGIVVETYGGRVKLNTISSISVSDNKTLL 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V VW+ V +++ I SNLG EG V+R+ VP+ T++ R LVK+ +E +I Sbjct: 67 VKVWEINNVGAIKTAIINSNLGFGFSCEGAVIRLTVPDMTQDMRKNLVKLLGKISEDCRI 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S+RNIRRD MD LK + + SED + +IQKITD IK I+ F K+KE++H Sbjct: 127 SIRNIRRDIMDKLKIMQDNKDISEDDLRIAGVEIQKITDEIIKKINDTFLAKEKELLHV 185 >gi|15605410|ref|NP_220196.1| ribosome recycling factor [Chlamydia trachomatis D/UW-3/CX] gi|255311504|ref|ZP_05354074.1| ribosome recycling factor [Chlamydia trachomatis 6276] gi|255317806|ref|ZP_05359052.1| ribosome recycling factor [Chlamydia trachomatis 6276s] gi|6831537|sp|O84684|RRF_CHLTR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|3329129|gb|AAC68272.1| Ribosome Releasing Factor [Chlamydia trachomatis D/UW-3/CX] gi|296436219|gb|ADH18393.1| ribosome recycling factor [Chlamydia trachomatis G/9768] gi|296437147|gb|ADH19317.1| ribosome recycling factor [Chlamydia trachomatis G/11222] gi|296438079|gb|ADH20240.1| ribosome recycling factor [Chlamydia trachomatis G/11074] gi|297140580|gb|ADH97338.1| ribosome recycling factor [Chlamydia trachomatis G/9301] gi|297748808|gb|ADI51354.1| Ribosome Recycling Factor (RRF) [Chlamydia trachomatis D-EC] gi|297749688|gb|ADI52366.1| Ribosome Recycling Factor (RRF) [Chlamydia trachomatis D-LC] Length = 179 Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats. Identities = 66/177 (37%), Positives = 110/177 (62%), Gaps = 3/177 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + + M ++F +K+ RTG+ P++++ V VE YG+ + L+ +A+++V + R L Sbjct: 3 LASAEKEMVGVLTFFQKETRGFRTGKAHPALVETVTVEVYGTTMRLSDIASISVSDMRQL 62 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +D V+++ +GI +NL L PIVEG +RI VPE TEE R ++K +E++K Sbjct: 63 LLSPYDAGTVSAISKGILAANLNLQPIVEGATVRINVPEPTEEYRREVIKQLKRKSEEAK 122 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +++RNIRR D LK K +ED V SLE IQ++TD K I+ ++K+ E+ Sbjct: 123 VAIRNIRRTFNDRLK---KDDNLTEDAVKSLEKKIQELTDKFCKQIEELAKQKEAEL 176 >gi|327399655|ref|YP_004340524.1| Ribosome-recycling factor [Hippea maritima DSM 10411] gi|327182284|gb|AEA34465.1| Ribosome-recycling factor [Hippea maritima DSM 10411] Length = 188 Score = 187 bits (477), Expect = 5e-46, Method: Composition-based stats. Identities = 58/188 (30%), Positives = 107/188 (56%), Gaps = 2/188 (1%) Query: 1 MNQVID--LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 M + +D + +KD M T+S KK + T++TGR S+ + +KVE+YG + L Q+A + Sbjct: 1 MEESVDKVITQMKDEMKKTLSSYKKYLTTVKTGRAHVSVFEGIKVESYGQQMQLKQLATI 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 + + +V+ WD ++ +E+ I ++N+G P +G++++I +P TEE R +VK+ Sbjct: 61 STPDAMTVVIQPWDVSIIKEIEKAILKANMGFTPQNDGKIIKINIPPMTEEDRKKVVKLL 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 +E K+++RN R+ + +K K SED E +++K D + K +D Sbjct: 121 KQESENYKVALRNARKKALKTIKDLEKEKIISEDESKRAEKEVKKALDDSSKKLDELMSN 180 Query: 179 KKKEIMHF 186 K+KEI++ Sbjct: 181 KEKEILNL 188 >gi|303277739|ref|XP_003058163.1| predicted protein [Micromonas pusilla CCMP1545] gi|226460820|gb|EEH58114.1| predicted protein [Micromonas pusilla CCMP1545] Length = 167 Score = 187 bits (476), Expect = 6e-46, Method: Composition-based stats. Identities = 66/171 (38%), Positives = 99/171 (57%), Gaps = 5/171 (2%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M + L++D+ LRTGR SP ML+ + V+AYG PL + +VT + L V ++D Sbjct: 1 MDAAVEALERDLGKLRTGRASPGMLESLVVDAYGEPTPLRNLGSVTARNAQTLAVMLYDP 60 Query: 74 EMVASVERGIHESNLGLNPIVEGQ-VLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + +V+ I ES LG NP +G L +PVPE T E ++ + K+ H E +KISVRN Sbjct: 61 TLKGAVQNAITESPLGFNPQEDGDGTLLVPVPEMTHETKVQVAKLCHRAGETAKISVRNA 120 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 RR GMD +KK+ +ED E D+QK++++ +K I+ K+K I Sbjct: 121 RRKGMDVIKKA----TMTEDEGNRAEKDVQKMSEAFVKKIEELVSAKEKSI 167 >gi|329942362|ref|ZP_08291172.1| ribosome recycling factor [Chlamydophila psittaci Cal10] gi|332287003|ref|YP_004421904.1| ribosome recycling factor [Chlamydophila psittaci 6BC] gi|313847600|emb|CBY16588.1| putative ribosome recycling factor [Chlamydophila psittaci RD1] gi|325506673|gb|ADZ18311.1| ribosome recycling factor [Chlamydophila psittaci 6BC] gi|328815272|gb|EGF85260.1| ribosome recycling factor [Chlamydophila psittaci Cal10] gi|328914234|gb|AEB55067.1| ribosome recycling factor [Chlamydophila psittaci 6BC] Length = 180 Score = 187 bits (476), Expect = 6e-46, Method: Composition-based stats. Identities = 61/177 (34%), Positives = 111/177 (62%), Gaps = 3/177 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + + +M + F K++ + RTG+ +P++++ V V+ YG+ + L+ +A+++V + R L Sbjct: 4 LADTEKKMAAALEFFTKEVRSFRTGKANPALVETVTVDVYGTTMRLSDLASISVADTRQL 63 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+S +D V+++ +GI +NL L P VEG ++RI +PE T E R ++K +E++K Sbjct: 64 VISPYDANNVSAISKGIIAANLNLQPDVEGSIVRIKIPEPTAEYRNEVIKQLRRKSEEAK 123 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +++RNIRR+ D LK K +ED V +E IQ++TD K ID ++K+ ++ Sbjct: 124 VAIRNIRRESNDKLK---KDSDLTEDAVKGMEKKIQELTDKFCKQIDEMTKQKEADL 177 >gi|218514368|ref|ZP_03511208.1| ribosome recycling factor [Rhizobium etli 8C-3] Length = 131 Score = 187 bits (475), Expect = 8e-46, Method: Composition-based stats. Identities = 86/131 (65%), Positives = 107/131 (81%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M++ ID++ +K RM +S K D+ +LRTGR S ++LD V +EAYGS VPLNQVAN+TV Sbjct: 1 MSEGIDIKELKRRMDGAVSAFKSDIASLRTGRASANILDPVTIEAYGSRVPLNQVANITV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EPRML VSVWDK MV++VERGI ESNLGLNPIV+GQ LRIP+PE EERR +LVKVAH Sbjct: 61 PEPRMLTVSVWDKSMVSAVERGIRESNLGLNPIVDGQSLRIPLPELNEERRKSLVKVAHD 120 Query: 121 YAEKSKISVRN 131 YAEKSK+++R+ Sbjct: 121 YAEKSKVAIRH 131 >gi|15618609|ref|NP_224895.1| ribosome recycling factor [Chlamydophila pneumoniae CWL029] gi|15836231|ref|NP_300755.1| ribosome recycling factor [Chlamydophila pneumoniae J138] gi|16752341|ref|NP_444599.1| ribosome recycling factor [Chlamydophila pneumoniae AR39] gi|33242057|ref|NP_876998.1| ribosome recycling factor [Chlamydophila pneumoniae TW-183] gi|6707740|sp|Q9Z7K6|RRF_CHLPN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|4377002|gb|AAD18838.1| Ribosome Releasing Factor [Chlamydophila pneumoniae CWL029] gi|7188986|gb|AAF37940.1| ribosome recycling factor [Chlamydophila pneumoniae AR39] gi|8979071|dbj|BAA98906.1| ribosome releasing factor [Chlamydophila pneumoniae J138] gi|33236567|gb|AAP98655.1| ribosome releasing factor [Chlamydophila pneumoniae TW-183] gi|269302486|gb|ACZ32586.1| ribosome recycling factor [Chlamydophila pneumoniae LPCoLN] Length = 180 Score = 186 bits (474), Expect = 9e-46, Method: Composition-based stats. Identities = 64/177 (36%), Positives = 109/177 (61%), Gaps = 3/177 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 LQ+ + +M + F K++ + RTG+ P++++ V V+ YG+ + L+ +A+++V + R L Sbjct: 4 LQDTEKKMAAALDFFHKEVKSFRTGKAHPALVETVVVDVYGTTMRLSDIASISVADLRQL 63 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+S +D +++ +GI +NL L P VEG ++RI VPE T + R ++K E++K Sbjct: 64 VISPYDGNNASAIAKGIIAANLNLQPEVEGSIIRIKVPEPTADYRQEMIKQLRRKCEEAK 123 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 I+VRNIRR+ D LK K +ED+V E IQ++TD K +D ++K+ EI Sbjct: 124 INVRNIRREANDKLK---KDSALTEDVVKGNEKKIQELTDKFCKQLDELTKQKEAEI 177 >gi|293400528|ref|ZP_06644673.1| ribosome recycling factor [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305554|gb|EFE46798.1| ribosome recycling factor [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 180 Score = 185 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 70/180 (38%), Positives = 108/180 (60%), Gaps = 3/180 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K +M + L +++ T+RTG + S+L+ V E YGS P+NQVA++ V+E R L Sbjct: 4 LDVTKHKMEKAVEKLDENLKTIRTGVANASLLEHVHFEYYGSETPINQVASIKVVEGRQL 63 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++ +D+ + +ER I S+ GL P +G+V+R+ VP TEERR L K A E++K Sbjct: 64 MIKPYDRSTLKDIERAIATSDTGLVPQSDGEVIRLNVPALTEERRKQLSKEADKMGEEAK 123 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I+VRN+RR+ D +K K + +ED ++ +QK+TD K I+ EK+KEIM Sbjct: 124 IAVRNVRREANDAIK---KDKELTEDDAKRMQEKVQKLTDEFAKKIEKEVSEKEKEIMKV 180 >gi|115495125|ref|NP_001069775.1| ribosome-recycling factor, mitochondrial precursor [Bos taurus] gi|122142430|sp|Q0VCQ4|RRFM_BOVIN RecName: Full=Ribosome-recycling factor, mitochondrial; Short=RRF; AltName: Full=Ribosome-releasing factor, mitochondrial; Flags: Precursor gi|111305001|gb|AAI20055.1| Mitochondrial ribosome recycling factor [Bos taurus] Length = 262 Score = 185 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 60/184 (32%), Positives = 104/184 (56%), Gaps = 3/184 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 +I+L+ + + M I LK + R SP LD + V +PLNQ++ +++ Sbjct: 80 EDIINLEEVDEEMKSVIEALKDNFNKTVNIRTSPGALDNITVVTADGKLPLNQISQISMK 139 Query: 62 EPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 P++++V++ E A+ + I ES + LNP VEG ++R+P+P+ T E R LVK+A Sbjct: 140 SPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPKVTREHREMLVKLAKQ 199 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 K+K S+R +R + ++ +KKS+ KASED + +E I ++ D T+ +D K Sbjct: 200 NTNKAKDSLRKVRTNAINKVKKSK--DKASEDTIRLIEKQISQMADDTVAELDRHLAVKT 257 Query: 181 KEIM 184 KE++ Sbjct: 258 KELL 261 >gi|237805028|ref|YP_002889182.1| ribosome recycling factor [Chlamydia trachomatis B/TZ1A828/OT] gi|231273328|emb|CAX10243.1| ribosome recycling factor [Chlamydia trachomatis B/TZ1A828/OT] Length = 179 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 65/177 (36%), Positives = 110/177 (62%), Gaps = 3/177 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + + M ++F +K+ +TG+ P+M++ V +E YG+ + L+ +A+++V + R L Sbjct: 3 LASAEKEMAGVLTFFQKETRGFKTGKAHPAMVETVTIEVYGTTMRLSDIASISVSDMRQL 62 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +D V+++ +GI +NL L PIVEG +RI VPE TEE R ++K +E++K Sbjct: 63 LISPYDAGTVSAISKGILAANLNLQPIVEGATVRINVPEPTEEYRREVIKQLKRKSEEAK 122 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +++RNIRR D LK K +ED V SLE IQ++TD K I+ ++K+ E+ Sbjct: 123 VAIRNIRRTFNDRLK---KDDSLTEDAVKSLEKKIQELTDKFCKQIEELAKQKEAEL 176 >gi|76789417|ref|YP_328503.1| ribosome recycling factor [Chlamydia trachomatis A/HAR-13] gi|237803107|ref|YP_002888301.1| ribosome recycling factor [Chlamydia trachomatis B/Jali20/OT] gi|123606674|sp|Q3KL17|RRF_CHLTA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|76167947|gb|AAX50955.1| ribosome recycling factor (RRF) [Chlamydia trachomatis A/HAR-13] gi|231274341|emb|CAX11136.1| ribosome recycling factor [Chlamydia trachomatis B/Jali20/OT] Length = 179 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 64/177 (36%), Positives = 110/177 (62%), Gaps = 3/177 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + + M ++F +K+ +TG+ P++++ V +E YG+ + L+ +A+++V + R L Sbjct: 3 LASAEKEMAGVLTFFQKETRGFKTGKAHPALVETVTIEVYGTTMRLSDIASISVSDMRQL 62 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 ++S +D V+++ +GI +NL L PIVEG +RI VPE TEE R ++K +E++K Sbjct: 63 LISPYDAGTVSAISKGILAANLNLQPIVEGATVRINVPEPTEEYRREVIKQLKRKSEEAK 122 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +++RNIRR D LK K +ED V SLE IQ++TD K I+ ++K+ E+ Sbjct: 123 VAIRNIRRTFNDRLK---KDDSLTEDAVKSLEKKIQELTDKFCKQIEELAKQKEAEL 176 >gi|89898769|ref|YP_515879.1| ribosome recycling factor [Chlamydophila felis Fe/C-56] gi|123482688|sp|Q252Q4|RRF_CHLFF RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|89332141|dbj|BAE81734.1| ribosome recycling factor [Chlamydophila felis Fe/C-56] Length = 180 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 59/177 (33%), Positives = 109/177 (61%), Gaps = 3/177 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + + +M + F +K++ RTG+ P++++ V V+ YG+ + L+ +A+++V + R L Sbjct: 4 LADTEKKMATALEFFQKEIRAFRTGKAHPALVETVTVDVYGTTMRLSDLASISVADTRQL 63 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+S +D V+++ +GI +NL L P EG ++RI +PE T E R ++K +E++K Sbjct: 64 VISPYDANNVSAISKGIIAANLNLQPDAEGAIIRIKIPEPTAEYRNEVIKQLRRKSEEAK 123 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +++RN+RR+ D LK K +ED V +E IQ++TD K ID ++K+ ++ Sbjct: 124 VTIRNVRREANDKLK---KDSDLTEDAVKGMEKKIQELTDKFCKQIDEMSKQKEADL 177 >gi|148377315|ref|YP_001256191.1| ribosome recycling factor (ribosome releasingfactor) [Mycoplasma agalactiae PG2] gi|291319983|ref|YP_003515241.1| ribosome recycling factor (ribosome releasing factor) [Mycoplasma agalactiae] gi|148291361|emb|CAL58744.1| Ribosome recycling factor (Ribosome releasingfactor) [Mycoplasma agalactiae PG2] gi|290752312|emb|CBH40283.1| Ribosome recycling factor (Ribosome releasing factor) [Mycoplasma agalactiae] Length = 182 Score = 184 bits (469), Expect = 3e-45, Method: Composition-based stats. Identities = 56/186 (30%), Positives = 106/186 (56%), Gaps = 4/186 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+++ LQ +++ + I+ L ++ TGR +P ++ +K+ Y + P+ +++N++V Sbjct: 1 MDELFILQ-LEEEIDKAINHLVFELSKTSTGRANPQLIRGIKINYYDTLTPIEELSNISV 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E + L++ +D V + + I + LG+NP+ EG +RI P T ER+ LVK Sbjct: 60 PEAQQLLIKPFDATTVRDIIKAITSAQLGINPVDEGSQIRIKFPPLTTERKRELVKSLSK 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 ++E +K+++RN R++ +K + + SEDM D+QKI D I+++D +K+ Sbjct: 120 HSETAKVAIRNARQNANKVIKANE---EISEDMQKRYLADVQKIVDKNIEHVDELVSKKE 176 Query: 181 KEIMHF 186 KEIM Sbjct: 177 KEIMTV 182 >gi|257894708|ref|ZP_05674361.1| ribosome recycling factor [Enterococcus faecium 1,231,408] gi|257831087|gb|EEV57694.1| ribosome recycling factor [Enterococcus faecium 1,231,408] Length = 155 Score = 184 bits (469), Expect = 4e-45, Method: Composition-based stats. Identities = 55/145 (37%), Positives = 93/145 (64%), Gaps = 1/145 (0%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M I + K++M L++++ +R GR + S+LD + V YG+ PLNQ+A++ + Sbjct: 1 MADAI-MTEAKEKMKKAAQNLQRELGQIRAGRANASLLDRITVNYYGAPTPLNQMASIQI 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E R+L+++ +DK ++ VE+ I S++G++P +G V+R+ +P+ TEERR L K Sbjct: 60 PEARVLMITPFDKSILQDVEKAIMASDIGISPTNDGNVIRLVIPQLTEERRKELAKDVKK 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRK 145 AE +KI++RNIRRD +D KK +K Sbjct: 120 EAENAKIAIRNIRRDAIDEYKKQQK 144 >gi|291408419|ref|XP_002720540.1| PREDICTED: mitochondrial ribosome recycling factor [Oryctolagus cuniculus] Length = 262 Score = 184 bits (469), Expect = 4e-45, Method: Composition-based stats. Identities = 61/184 (33%), Positives = 104/184 (56%), Gaps = 3/184 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 +I+L+++ + M + LK + R SP LD + V + LNQ++ +++ Sbjct: 80 EDIINLEDVDEDMKSVLEALKDNFNKTLNIRTSPGSLDQITVVTADGKLALNQISQISMK 139 Query: 62 EPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 P++++V++ E A+ + I ES + LNP VEG ++R+P+P+ T E R LVK+A Sbjct: 140 SPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPKVTREHREMLVKLAKQ 199 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 K+K S+R +R + M+ +KKS+ KASED V +E I ++ D TI +D K Sbjct: 200 NTNKAKDSLRRVRTNAMNKVKKSK--DKASEDTVRLIEKQISQMADDTIAELDRHLAVKT 257 Query: 181 KEIM 184 KE++ Sbjct: 258 KELL 261 >gi|190571622|ref|YP_001975980.1| ribosome recycling factor [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019024|ref|ZP_03334831.1| ribosome recycling factor [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|238057838|sp|B3CNH2|RRF_WOLPP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|190357894|emb|CAQ55354.1| ribosome recycling factor [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995133|gb|EEB55774.1| ribosome recycling factor [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 185 Score = 184 bits (468), Expect = 5e-45, Method: Composition-based stats. Identities = 73/185 (39%), Positives = 115/185 (62%), Gaps = 2/185 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ K+RM TI DM +RTGR + S+LD + V YG H LNQVA V+ Sbjct: 2 LNEI--KAKTKERMLKTIQSFHDDMKGVRTGRANASLLDGIVVNIYGGHQKLNQVAGVSA 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 ++ + L V VWD + V+ I +NL LNP+VEG +RI +P+ T+E R LVK+ H Sbjct: 60 IDNKTLSVKVWDATAIGEVKNAIINANLNLNPVVEGNTIRIVLPDLTQETREKLVKLLHQ 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 ++E +++++RNIRRD M+ +++ +K+ + SED + +IQ ITD +K +D K+ Sbjct: 120 FSENARVAIRNIRRDVMEEIEEMKKNKEISEDDFHVAKKEIQNITDDNVKKVDDDLSIKE 179 Query: 181 KEIMH 185 K+I+H Sbjct: 180 KDILH 184 >gi|62184691|ref|YP_219476.1| ribosome recycling factor [Chlamydophila abortus S26/3] gi|81313123|sp|Q5L766|RRF_CHLAB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|62147758|emb|CAH63502.1| putative ribosome recycling factor [Chlamydophila abortus S26/3] Length = 180 Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 61/177 (34%), Positives = 111/177 (62%), Gaps = 3/177 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + + +M + F K++ + RTG+ +P++++ V V+ YG+ + L+ +A+++V + R L Sbjct: 4 LADTEKKMAAALEFFTKEVRSFRTGKANPALVETVTVDVYGTTMRLSDLASISVADTRQL 63 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+S +D V+++ +GI +NL L P VEG ++RI +PE T E R ++K +E++K Sbjct: 64 VISPYDANNVSAISKGIIAANLNLQPDVEGSIVRIKIPEPTAEYRNEVIKQLRRKSEEAK 123 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +++RNIRR+ D LK K +ED V +E IQ++TD K ID ++K+ ++ Sbjct: 124 VAIRNIRRESNDKLK---KDSDLTEDAVKGMEKKIQELTDKFCKQIDKMSKQKEVDL 177 >gi|222097269|ref|YP_002531326.1| ribosome recycling factor [Bacillus cereus Q1] gi|221241327|gb|ACM14037.1| ribosome recycling factor [Bacillus cereus Q1] Length = 134 Score = 184 bits (467), Expect = 6e-45, Method: Composition-based stats. Identities = 64/133 (48%), Positives = 89/133 (66%) Query: 54 QVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLA 113 Q+AN+TV E R+LV+ +DK + +E+ I +++LGLNP +G V+RI P TEERR Sbjct: 2 QLANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRD 61 Query: 114 LVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNID 173 LVKV YAE++K++VRN+RRDG D LKK K+G+ +ED + DIQK TD I +D Sbjct: 62 LVKVVKKYAEEAKVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVD 121 Query: 174 SFFEEKKKEIMHF 186 + K+KEIM Sbjct: 122 EIAKNKEKEIMEV 134 >gi|307106026|gb|EFN54273.1| hypothetical protein CHLNCDRAFT_135841 [Chlorella variabilis] Length = 177 Score = 183 bits (466), Expect = 8e-45, Method: Composition-based stats. Identities = 63/177 (35%), Positives = 106/177 (59%), Gaps = 5/177 (2%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + K M ++ L+ ++ +RTGR +P MLD +KV+ YG +PL +V+V +P++L Sbjct: 1 MTETKSLMERALAHLQGELSNIRTGRATPGMLDHLKVDVYGDRLPLKACGSVSVRDPQLL 60 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V++V+D + V SV + + ES L L+P EGQ + +P+P T E A++KV E++K Sbjct: 61 VITVFDVDAVPSVVKAVSESPLRLSPRAEGQEVLVPIPRPTIESLEAMMKVCKVEGEQAK 120 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +SVR+ R+ MD KK SED +E ++QK+TD ++ ++ + K+K I Sbjct: 121 VSVRHARKLAMDAAKKLG-----SEDERKRVEREVQKLTDEYVREVEGAVQRKEKSI 172 >gi|73968248|ref|XP_537859.2| PREDICTED: similar to mitochondrial ribosome recycling factor isoform 1 [Canis familiaris] Length = 262 Score = 183 bits (466), Expect = 9e-45, Method: Composition-based stats. Identities = 58/184 (31%), Positives = 101/184 (54%), Gaps = 3/184 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 +I+L+ + + M + LK + + R SP LD + V + LNQ+ +++ Sbjct: 80 EDIINLEEVDEEMKSVMEALKDNFNKTISIRTSPGSLDRITVVTANGKLALNQIGQISMK 139 Query: 62 EPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 P +++V++ E A+ + I ES + LNP VEG ++R+P+P+ T E R +VK+A Sbjct: 140 SPHLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPKVTREHREMMVKLAKQ 199 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 K+K S+R +R + M+ LKKS+ K SED + +E I ++ D T+ +D K Sbjct: 200 NTNKAKDSLRKVRTNAMNKLKKSK--DKVSEDTIRLIEKQISQMADDTVAELDRHLAVKT 257 Query: 181 KEIM 184 KE++ Sbjct: 258 KELL 261 >gi|330444066|ref|YP_004377052.1| ribosome recycling factor [Chlamydophila pecorum E58] gi|328807176|gb|AEB41349.1| ribosome recycling factor [Chlamydophila pecorum E58] Length = 180 Score = 183 bits (466), Expect = 9e-45, Method: Composition-based stats. Identities = 63/177 (35%), Positives = 109/177 (61%), Gaps = 3/177 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L++ + +M T+ F +K++ T RTG+ P++++ V V+ YG+ + L+ +++++V + R L Sbjct: 4 LRDAETKMASTLEFFQKEIKTFRTGKAHPALVETVTVDVYGTTMRLSDISSISVADARQL 63 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 VVS +D +++ +GI +NL L P VEG ++RI VPE T E R ++K E++K Sbjct: 64 VVSPYDANNASAIAKGILAANLNLQPEVEGAIIRIRVPEPTAELRQDIIKQLRRKCEEAK 123 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 I +RNIRR+ D +K K +ED V E +Q++TD K ID ++K+ +I Sbjct: 124 IQIRNIRRETNDKVK---KDSTLTEDAVKGAEKKVQELTDKFCKQIDEIAKQKEIDI 177 >gi|21312752|ref|NP_080698.1| ribosome-recycling factor, mitochondrial precursor [Mus musculus] gi|62901049|sp|Q9D6S7|RRFM_MOUSE RecName: Full=Ribosome-recycling factor, mitochondrial; Short=RRF; AltName: Full=Ribosome-releasing factor, mitochondrial; Flags: Precursor gi|12845172|dbj|BAB26646.1| unnamed protein product [Mus musculus] gi|18044179|gb|AAH19787.1| Mitochondrial ribosome recycling factor [Mus musculus] gi|26328197|dbj|BAC27839.1| unnamed protein product [Mus musculus] gi|123208257|emb|CAM20861.1| mitochondrial ribosome recycling factor [Mus musculus] Length = 262 Score = 183 bits (466), Expect = 9e-45, Method: Composition-based stats. Identities = 58/184 (31%), Positives = 100/184 (54%), Gaps = 3/184 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 +I L+ + + M + LK + R +P LD + V V LNQ+ +++ Sbjct: 80 EDIISLEEVDEDMKSVVEALKDNFNKTLNIRTAPGSLDHITVVTADGKVALNQIGQISMK 139 Query: 62 EPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 P++++V++ E A+ + I ES + LNP VEG ++R+P+P+ T E R LVK+A Sbjct: 140 SPQVILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPKVTREHREMLVKLAKQ 199 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 K+K ++R +R + M+ LKKS+ K SED + +E I ++ D T+ +D K Sbjct: 200 NTNKAKENLRKVRTNAMNKLKKSK--DKTSEDTIRLIEKQISQMADDTVAELDQHLAAKT 257 Query: 181 KEIM 184 KE++ Sbjct: 258 KELL 261 >gi|328874111|gb|EGG22477.1| hypothetical protein DFA_04605 [Dictyostelium fasciculatum] Length = 348 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 55/179 (30%), Positives = 104/179 (58%), Gaps = 3/179 (1%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 +DL +K R T+ F+K+ +R GR P +L+ + VE ++ + +A +T+ + Sbjct: 171 VDLSTMKQRCEATMDFVKRQFGDIRVGRAGPELLERITVETPNGNMQIQHMAMITIKDAL 230 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 L ++ +D M+ ++E+ + +S+LGLNP G ++RI +P+ T++ R L+K + +E+ Sbjct: 231 TLHITPYDPNMLKNIEKALQKSDLGLNPTAVGTLIRISLPKPTQDLRNKLLKNVNTISEE 290 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +K+SVR R++ D + K + ++D ++E +IQK+TD I + E K KEI Sbjct: 291 AKVSVRRHRKETTDSV---VKQFRLTKDDEKTIEKNIQKMTDDFIAQVTKATESKVKEI 346 >gi|301760406|ref|XP_002915994.1| PREDICTED: ribosome-recycling factor, mitochondrial-like [Ailuropoda melanoleuca] Length = 262 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 60/184 (32%), Positives = 100/184 (54%), Gaps = 3/184 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 +I L+ + + M + LK + R SP LD + V + LNQ+ +++ Sbjct: 80 EDIISLEEVDEEMKSVMEALKDNFNKTVNIRTSPGSLDHITVVTADGKLALNQIGQISMK 139 Query: 62 EPRMLVVS-VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 P++++V+ V E A+ + I ES + LNP VEG ++R+P+P+ T E R LVK+A Sbjct: 140 SPQLILVNMVSFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPKVTREHREMLVKLAKQ 199 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 K+K S+R +R + M+ LKKS+ K SED + +E I ++ D T+ +D K Sbjct: 200 NTNKAKDSLRKVRTNAMNKLKKSK--DKVSEDTIRLIEKQISQMADDTVAELDRHLAVKT 257 Query: 181 KEIM 184 KE++ Sbjct: 258 KELL 261 >gi|39938654|ref|NP_950420.1| ribosome recycling factor [Onion yellows phytoplasma OY-M] gi|47116996|sp|P61308|RRF_ONYPE RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|39721763|dbj|BAD04253.1| ribosome recycling factor [Onion yellows phytoplasma OY-M] Length = 184 Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 58/179 (32%), Positives = 104/179 (58%), Gaps = 4/179 (2%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++ +M + K+ +RTG +P++LD + V YG+ L +A+++V E L Sbjct: 9 LASLETKMTQAQEVMLKNFCDIRTGTANPNILDKITVNYYGAPTFLKTLASISVSEGNQL 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + +D ++ ++++ + SNLG+ P +G V+R+ P+ TEERR AL+K AEK+K Sbjct: 69 NIKPYDSTLIPNIKKVLLASNLGITPQTDGLVVRLVFPKPTEERRKALMKEVEQLAEKTK 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +++RN+RR+G D +KK + ++D+ N IQ +TD IK I+ K E++ Sbjct: 129 VAIRNVRREGNDKIKKV----ELTKDLETFYLNQIQTLTDKNIKLIEKHTTTKNTELLK 183 >gi|126294057|ref|XP_001364967.1| PREDICTED: hypothetical protein [Monodelphis domestica] Length = 262 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 56/184 (30%), Positives = 98/184 (53%), Gaps = 3/184 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 +I L+ + M + LK + R SP LD + V LN + +++ Sbjct: 80 EDIICLEEVDVEMKSVVEALKDNFNKNLNIRTSPGSLDHITVTTGDGKFALNHIGQISLK 139 Query: 62 EPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 P++++V++ + E A+ + I ES + LNP V+G V+R+P+P+ T E R LVK+A Sbjct: 140 SPQLILVNMTNFPECTAAAIKAIRESGMNLNPEVDGTVIRVPIPKVTREHREMLVKLAKQ 199 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 K+K ++R +R + M+ LKKS+ S +ED + +E I ++ D T+ +D K Sbjct: 200 NTNKAKDNLRKVRTNAMNKLKKSKDS--VAEDTIKLIEKQIGQMADDTVAEMDKHLALKT 257 Query: 181 KEIM 184 KE++ Sbjct: 258 KELL 261 >gi|308806109|ref|XP_003080366.1| COG0233: Ribosome recycling factor (ISS) [Ostreococcus tauri] gi|116058826|emb|CAL54533.1| COG0233: Ribosome recycling factor (ISS) [Ostreococcus tauri] Length = 529 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 62/172 (36%), Positives = 90/172 (52%), Gaps = 4/172 (2%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 + + L D+ LRT R S M+D + V+ YG+ PL+ VA +T + L V+++D Sbjct: 66 KFEQAVHALDVDLSHLRTARASEGMIDHIIVDVYGAPTPLSHVATITAPNAQTLSVTLFD 125 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 SVE+ I S LGL P L +P+P T++ R + K+AH E +KI+ RNI Sbjct: 126 PSTKPSVEKAIMNSPLGLVPRATSDGLIVPIPAMTQDTRKEVCKLAHKLGETAKIAARNI 185 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 R + H+K++ ASED LE +Q + D T I S K KEIM Sbjct: 186 RHKALKHIKRA----AASEDEQKRLEKALQAVADDTASKIASRVAAKDKEIM 233 >gi|308190230|ref|YP_003923161.1| ribosome recycling factor [Mycoplasma fermentans JER] gi|319777597|ref|YP_004137248.1| ribosome-recycling factor [Mycoplasma fermentans M64] gi|238810012|dbj|BAH69802.1| hypothetical protein [Mycoplasma fermentans PG18] gi|307624972|gb|ADN69277.1| ribosome recycling factor [Mycoplasma fermentans JER] gi|318038672|gb|ADV34871.1| Ribosome-recycling factor [Mycoplasma fermentans M64] Length = 183 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 53/172 (30%), Positives = 93/172 (54%), Gaps = 3/172 (1%) Query: 15 GDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKE 74 I+ ++ + TGR +P ++ V++ Y + PL ++A++TV EP+ L++ +D Sbjct: 15 EKAINHYAFELSKISTGRANPQLIKGVRINYYDTLTPLEELASITVPEPQQLLIKPFDVS 74 Query: 75 MVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRR 134 + + I +NLGLNP+ EG +RI P T ERR +VK + E +K+++RN R+ Sbjct: 75 CNHEIAKTILNANLGLNPVDEGNQVRITFPPLTTERRKDMVKSLAKFTENAKVAIRNARQ 134 Query: 135 DGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 + +K + SED ++IQK D I++I+ K+KE+M Sbjct: 135 NVNKSIKA---DEELSEDQEKKYLDEIQKEVDKKIEHINKMTINKEKELMSI 183 >gi|6091742|gb|AAF03454.1|AC010797_30 putative ribosome recycling factor [Arabidopsis thaliana] Length = 284 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 60/194 (30%), Positives = 97/194 (50%), Gaps = 20/194 (10%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 +M I L +D+ LRTGR +P MLD + VE G +PLN +A V+VL+P+ L V+ Sbjct: 92 ASSQMEAAIDALSRDLTKLRTGRAAPGMLDHIVVETGGVKMPLNHLALVSVLDPKTLSVN 151 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPE-----TTEE-------------RR 111 +D + V +E+ I S LGLNP ++GQ L +P + Sbjct: 152 PYDPDTVKELEKAIVASPLGLNPKLDGQRLVASIPAYESSSLSNFISLRLSLDPIYLYEL 211 Query: 112 LALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKN 171 A+ K+ +E K S+R R+ +D +KK+ +D V LE ++ ++T +K+ Sbjct: 212 QAMCKIVTKSSEVVKQSIRRARQKALDTIKKA--GSSLPKDEVKRLEKEVDELTKKFVKS 269 Query: 172 IDSFFEEKKKEIMH 185 + + K+KEI Sbjct: 270 AEDMCKSKEKEITE 283 >gi|126642019|ref|YP_001085003.1| ribosome releasing factor [Acinetobacter baumannii ATCC 17978] Length = 144 Score = 181 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 63/145 (43%), Positives = 91/145 (62%), Gaps = 1/145 (0%) Query: 42 KVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRI 101 V YGS VPLNQVANV V + R L+V +++ MVA++++ I ES+LGLNPI +R+ Sbjct: 1 MVPYYGSDVPLNQVANVGVEDSRTLIVQPFERTMVAAIDKAIRESDLGLNPITA-DSIRV 59 Query: 102 PVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDI 161 P+P TEE R + K+A + AE +K+++RNIRRD + +K K + SED +DI Sbjct: 60 PLPALTEETRRDMQKIARSEAENAKVAIRNIRRDVLGDIKALLKEKEISEDDERRAGDDI 119 Query: 162 QKITDSTIKNIDSFFEEKKKEIMHF 186 QKITD + +D K+ E+M Sbjct: 120 QKITDKYVAEVDKRLAAKEAELMKV 144 >gi|297270215|ref|XP_002800031.1| PREDICTED: ribosome-recycling factor, mitochondrial isoform 2 [Macaca mulatta] Length = 262 Score = 181 bits (460), Expect = 4e-44, Method: Composition-based stats. Identities = 59/184 (32%), Positives = 101/184 (54%), Gaps = 3/184 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 +I+L+ + + M I LK + R SP LD + V + LNQ+ +++ Sbjct: 80 EDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQIGQISMK 139 Query: 62 EPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 P++++V++ E A+ + I ES + LNP VEG ++R+P+P+ T E R LVK+A Sbjct: 140 SPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGMLIRVPIPQVTREHRETLVKLAKQ 199 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 K+K S+R +R + M+ LKKS+ + SED + +E I ++ D T+ +D K Sbjct: 200 NTNKAKDSLRKVRTNAMNKLKKSKDT--VSEDTIRLVEKQISQMADDTVAELDRHLAVKT 257 Query: 181 KEIM 184 KE++ Sbjct: 258 KELL 261 >gi|311246342|ref|XP_003122164.1| PREDICTED: ribosome-recycling factor, mitochondrial-like isoform 1 [Sus scrofa] Length = 262 Score = 181 bits (460), Expect = 4e-44, Method: Composition-based stats. Identities = 60/184 (32%), Positives = 101/184 (54%), Gaps = 3/184 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 +I L+ + + M I LK + R SP LD + V + LNQ+ +++ Sbjct: 80 EDIISLEEVDEEMKSVIEALKDNFNKTVNIRTSPGSLDQITVVTADGKLALNQIGQISMK 139 Query: 62 EPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 P++++V++ E A+ + I ES + LNP VEG ++R+P+P+ T E R LVK+A Sbjct: 140 SPQLILVNMASFPECTAAAIKAIRESGMNLNPDVEGTLIRVPIPKVTREHREMLVKLAKQ 199 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 K+K S+R +R + M+ LKKS+ KASED + +E I ++ D T+ ++ K Sbjct: 200 NTNKAKESLRKVRTNAMNKLKKSK--DKASEDTLRLIEKQISQMADDTVAELERHLAVKT 257 Query: 181 KEIM 184 KE++ Sbjct: 258 KELL 261 >gi|114626532|ref|XP_001135996.1| PREDICTED: mitochondrial ribosome recycling factor isoform 3 [Pan troglodytes] gi|114626534|ref|XP_001136081.1| PREDICTED: mitochondrial ribosome recycling factor isoform 4 [Pan troglodytes] gi|114626536|ref|XP_001136160.1| PREDICTED: mitochondrial ribosome recycling factor isoform 5 [Pan troglodytes] gi|114626538|ref|XP_001136239.1| PREDICTED: mitochondrial ribosome recycling factor isoform 6 [Pan troglodytes] Length = 262 Score = 180 bits (458), Expect = 6e-44, Method: Composition-based stats. Identities = 59/184 (32%), Positives = 101/184 (54%), Gaps = 3/184 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 +I+L+ + + M I LK + R SP LD + V + LNQ++ +++ Sbjct: 80 EDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMK 139 Query: 62 EPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 P++++V++ E A+ + I ES + LNP VEG ++R+P+P+ T E R LVK+A Sbjct: 140 SPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPQVTREHREMLVKLAKQ 199 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 K+K S+R +R + M+ LKKS+ SED + +E I ++ D T+ +D K Sbjct: 200 NTNKAKDSLRKVRTNSMNKLKKSK--YTVSEDTIRLIEKQISQMADDTVAELDRHLAVKT 257 Query: 181 KEIM 184 KE++ Sbjct: 258 KELL 261 >gi|20270317|ref|NP_620132.1| ribosome-recycling factor, mitochondrial isoform 1 precursor [Homo sapiens] gi|62901043|sp|Q96E11|RRFM_HUMAN RecName: Full=Ribosome-recycling factor, mitochondrial; Short=RRF; AltName: Full=Ribosome-releasing factor, mitochondrial; Flags: Precursor gi|15341771|gb|AAH13049.1| Mitochondrial ribosome recycling factor [Homo sapiens] gi|55958149|emb|CAI14711.1| mitochondrial ribosome recycling factor [Homo sapiens] gi|158256638|dbj|BAF84292.1| unnamed protein product [Homo sapiens] gi|312150650|gb|ADQ31837.1| mitochondrial ribosome recycling factor [synthetic construct] Length = 262 Score = 180 bits (458), Expect = 7e-44, Method: Composition-based stats. Identities = 59/184 (32%), Positives = 102/184 (55%), Gaps = 3/184 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 +I+L+ + + M I LK + R SP LD + V + LNQ++ +++ Sbjct: 80 EDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMK 139 Query: 62 EPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 P++++V++ E A+ + I ES + LNP VEG ++R+P+P+ T E R LVK+A Sbjct: 140 SPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPQVTREHREMLVKLAKQ 199 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 K+K S+R +R + M+ LKKS+ + SED + +E I ++ D T+ +D K Sbjct: 200 NTNKAKDSLRKVRTNSMNKLKKSKDT--VSEDTIRLIEKQISQMADDTVAELDRHLAVKT 257 Query: 181 KEIM 184 KE++ Sbjct: 258 KELL 261 >gi|282850823|ref|ZP_06260197.1| ribosome recycling factor [Lactobacillus gasseri 224-1] gi|282557775|gb|EFB63363.1| ribosome recycling factor [Lactobacillus gasseri 224-1] Length = 155 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 57/144 (39%), Positives = 91/144 (63%), Gaps = 2/144 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 N+VI + KD M +I+ +K++ +R + S+L+ +KV+ YG PL Q+++V++ Sbjct: 3 NEVI--EKAKDNMKKSIAVFQKELGGIRAAVANASLLEGIKVDYYGVPTPLTQMSSVSIP 60 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 E R+L+V+ +DK + +E I S+LG+ P +G V+RI +P+ T ERR + K Sbjct: 61 EARVLMVTPYDKSSLDDIEHAILASDLGITPANDGTVIRIVIPQLTGERRQEIAKQVGKL 120 Query: 122 AEKSKISVRNIRRDGMDHLKKSRK 145 AEK KI+VRN+RRD MD LK+ K Sbjct: 121 AEKGKIAVRNVRRDAMDTLKRQEK 144 >gi|50757135|ref|XP_415395.1| PREDICTED: similar to Mitochondrial ribosome recycling factor [Gallus gallus] Length = 259 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 59/184 (32%), Positives = 96/184 (52%), Gaps = 3/184 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 +I+L+ M + LK+D R S LD + V PLNQ+ ++ Sbjct: 77 EDIINLEETNTDMQAVVEALKEDFNRNLNVRTSQGALDHIIVTTKDGKFPLNQLGQISQK 136 Query: 62 EPRMLVVSV-WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 P+++VV++ E A+ + I ES + LNP V+G ++R+PVP+ T E R +L K+A Sbjct: 137 SPQLIVVNMTSFPESTAAAMKAIRESGMNLNPEVDGTLIRVPVPKVTREHRESLAKLAKQ 196 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 KSK ++R +R ++ +KK + K SED + LE IQ++ DS +D K Sbjct: 197 STNKSKEALRKVRSKSVNQVKKFK--SKVSEDTIWLLEKQIQQMADSAAAEMDKLLAAKT 254 Query: 181 KEIM 184 KE++ Sbjct: 255 KELL 258 >gi|254797264|ref|YP_003082106.1| ribosome recycling factor [Neorickettsia risticii str. Illinois] gi|254590506|gb|ACT69868.1| ribosome recycling factor [Neorickettsia risticii str. Illinois] Length = 185 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 110/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ D++ + D+ +R+G +S S+LD V V + + LNQVA+++V+ +ML Sbjct: 6 IKETNDKLRSSYEVFLSDLKGIRSGSLSVSILDGVIVSTHMGKLRLNQVASLSVVNNKML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V VWDK V +V+ I SNLG+NPIVEG VLR+PVP+ TEERR LVKV Y +++K Sbjct: 66 SVQVWDKSTVGAVKDAILTSNLGMNPIVEGSVLRLPVPDLTEERRKELVKVLKKYGDRAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD + +K K+ + SED + +L I KI ID +K+ +I+ Sbjct: 126 VAVRNIRRDAVSRIKVLEKAKEISEDDMHALLKKIDKIVSEEDARIDDAVSKKENDILKV 185 >gi|189184500|ref|YP_001938285.1| ribosome recycling factor [Orientia tsutsugamushi str. Ikeda] gi|238692022|sp|B3CUK4|RRF_ORITI RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|189181271|dbj|BAG41051.1| ribosome recycling factor [Orientia tsutsugamushi str. Ikeda] Length = 187 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 73/187 (39%), Positives = 119/187 (63%), Gaps = 1/187 (0%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 MN + ++ +M + L D+ LR G+ S LD V+VEAY S VP+ QVA ++V Sbjct: 1 MNHEELINSLTKKMNGALQVLDADLKGLRVGQASAYFLDPVQVEAYNSKVPILQVATISV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVE-GQVLRIPVPETTEERRLALVKVAH 119 + + ++V VWDK +V +V++ I E+NLG++ I + Q++R+ +P +EERR LVK+AH Sbjct: 61 SDTKTILVQVWDKSLVKAVKKAIMEANLGVSIISDDNQIIRLQLPIPSEERRKELVKIAH 120 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 Y EKSKI VRNIRRDG++ +K+ ++ + S+D +IQ++TD ID + K Sbjct: 121 KYQEKSKIIVRNIRRDGIELIKQMEQNTECSKDEAHIYSKEIQELTDKYCDKIDKIIKLK 180 Query: 180 KKEIMHF 186 +++I++ Sbjct: 181 EQDIINL 187 >gi|148285160|ref|YP_001249250.1| ribosome recycling factor [Orientia tsutsugamushi str. Boryong] gi|166230811|sp|A5CFN3|RRF_ORITB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|146740599|emb|CAM81253.1| ribosome recycling factor [Orientia tsutsugamushi str. Boryong] Length = 187 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 73/187 (39%), Positives = 119/187 (63%), Gaps = 1/187 (0%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 MN + ++ +M + L D+ LR G+ S LD V+VEAY S VP+ QVA ++V Sbjct: 1 MNHEELINSLTKKMNGALQVLDADLKGLRVGQASAYFLDPVQVEAYNSRVPILQVATISV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVE-GQVLRIPVPETTEERRLALVKVAH 119 + + ++V VWDK +V +V++ I E+NLG++ I + Q++R+ +P +EERR LVK+AH Sbjct: 61 SDTKTILVQVWDKSLVKAVKKAIMEANLGVSIISDDNQIIRLQLPIPSEERRKELVKIAH 120 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 Y EKSKI VRNIRRDG++ +K+ ++ + S+D +IQ++TD ID + K Sbjct: 121 KYQEKSKIIVRNIRRDGIELIKQMEQNTECSKDEAHIYSKEIQELTDKYCDKIDKIIKLK 180 Query: 180 KKEIMHF 186 +++I++ Sbjct: 181 EQDIINL 187 >gi|56605784|ref|NP_001008355.1| ribosome-recycling factor, mitochondrial precursor [Rattus norvegicus] gi|62900751|sp|Q5RKI9|RRFM_RAT RecName: Full=Ribosome-recycling factor, mitochondrial; Short=RRF; AltName: Full=Ribosome-releasing factor, mitochondrial; Flags: Precursor gi|55715664|gb|AAH85779.1| Mitochondrial ribosome recycling factor [Rattus norvegicus] Length = 262 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 57/184 (30%), Positives = 100/184 (54%), Gaps = 3/184 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 +I L+ + + M + LK + R +P LD + V + LNQ+ +++ Sbjct: 80 EDIISLEEVDEDMKSVMEALKDNFNKTLNIRTAPGSLDHITVVTADGKLALNQIGQISMK 139 Query: 62 EPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 P++++V++ E A+ + I ES + LNP VEG ++R+P+P+ T E R LVK+A Sbjct: 140 SPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPKVTREHREMLVKLAKQ 199 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 K+K ++R +R + M+ LKKS+ K SED + +E I ++ D T+ +D K Sbjct: 200 NTNKAKENLRKVRTNAMNKLKKSK--DKTSEDTIRLIEKQISQMADDTVAELDRHLAAKT 257 Query: 181 KEIM 184 KE++ Sbjct: 258 KELL 261 >gi|68171353|ref|ZP_00544749.1| Ribosome recycling factor [Ehrlichia chaffeensis str. Sapulpa] gi|67999224|gb|EAM85878.1| Ribosome recycling factor [Ehrlichia chaffeensis str. Sapulpa] Length = 187 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 67/181 (37%), Positives = 107/181 (59%), Gaps = 2/181 (1%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL--EPRM 65 Q+ K RM ++S D+ +RTGR S+L+ + VE YG V LN +++V+V + + Sbjct: 7 QDAKSRMEKSLSVYLSDIDGIRTGRARTSVLNGIVVETYGGRVKLNTISSVSVSVSDNKT 66 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 L++ VWD + +++ I SNLG E +R+ VP+ T++ R LVK+ +E Sbjct: 67 LMIKVWDSNNIGAIKTAIMNSNLGFGISCEATTIRLTVPDMTQDMRKNLVKLLGKISEDC 126 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++S+RNIRRD MD LK + S + SED + +IQKITD +K ++ F K+KE++H Sbjct: 127 RVSIRNIRRDIMDRLKVMQDSKEISEDDLRVAGVEIQKITDDIMKKVNDAFTSKEKELLH 186 Query: 186 F 186 Sbjct: 187 V 187 >gi|313678182|ref|YP_004055922.1| ribosome recycling factor [Mycoplasma bovis PG45] gi|312950548|gb|ADR25143.1| ribosome recycling factor [Mycoplasma bovis PG45] Length = 183 Score = 177 bits (451), Expect = 5e-43, Method: Composition-based stats. Identities = 53/171 (30%), Positives = 94/171 (54%), Gaps = 3/171 (1%) Query: 16 DTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEM 75 I+ L ++ TGR +P ++ +K+ Y + P+ ++AN++V E + L++ +D Sbjct: 16 KAINHLVFELSKTSTGRANPQLIRGIKINYYDTLTPIEELANISVPEAQQLLIKPFDATT 75 Query: 76 VASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRD 135 V + + I + LG+NP+ EG +RI P T ER+ LVK ++E +K+ +RN R++ Sbjct: 76 VRDIIKAITNAQLGINPVDEGSQIRIKFPPLTTERKKELVKALSKHSEAAKVGIRNARQN 135 Query: 136 GMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +K + + SED D+QKI D I+++D +K+KEIM Sbjct: 136 ANKIIK---SNDEISEDAQKRYLLDVQKIVDKNIEHVDELVSKKEKEIMTV 183 >gi|209736906|gb|ACI69322.1| Ribosome recycling factor, mitochondrial precursor [Salmo salar] Length = 265 Score = 177 bits (450), Expect = 6e-43, Method: Composition-based stats. Identities = 55/184 (29%), Positives = 103/184 (55%), Gaps = 3/184 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 +I L+ +K+ M ++ LK D + R SP LD + V PLNQ+ +++ Sbjct: 83 EDIISLEEVKEDMAAVLTTLKDDFSRNLSIRTSPGALDHIVVSTADGKFPLNQLGQISMK 142 Query: 62 EPRMLVVSV-WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 P++++V++ E V + R + ES++ LNP V+G ++R+ +P+ T E R L K+A Sbjct: 143 SPQLIMVNMTAFPEAVGAATRSLRESSMKLNPEVDGTIIRVAIPKVTREHRENLAKLAKQ 202 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 ++ K+K S+R +R + + +KK++ + SED + +E I ++ DS ++D K Sbjct: 203 FSNKAKESLRKVRSNAITQVKKAKDT--VSEDTIRLVEKQIGQMADSFAADVDKQLTTKT 260 Query: 181 KEIM 184 KE++ Sbjct: 261 KELL 264 >gi|224073899|ref|XP_002189665.1| PREDICTED: mitochondrial ribosome recycling factor [Taeniopygia guttata] Length = 259 Score = 177 bits (449), Expect = 7e-43, Method: Composition-based stats. Identities = 60/184 (32%), Positives = 99/184 (53%), Gaps = 3/184 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 +I+L+ + M I LK+D + R SP LD + V PLNQ+ ++ Sbjct: 77 EDIINLEETNEDMQAVIEALKEDFSRNLSVRTSPGALDHITVMTKDGKFPLNQLGQISQK 136 Query: 62 EPRMLVVSV-WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 P++++V++ E A+ + I ES + LNP V+G V+R+PVP+ T E R +L K+A Sbjct: 137 SPQLMIVNMTSFPESTAAAAKAIRESGMNLNPEVDGTVIRVPVPKVTREHRESLAKLAKQ 196 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 + KSK ++R +R + +KKS+ K SED + LE IQ++ D +D K Sbjct: 197 FTNKSKEALRKVRSKSITQVKKSK--NKVSEDTIWLLEKQIQQMADEAATEMDKLLAAKT 254 Query: 181 KEIM 184 K+++ Sbjct: 255 KKLL 258 >gi|294155890|ref|YP_003560274.1| ribosome recycling factor [Mycoplasma crocodyli MP145] gi|291600515|gb|ADE20011.1| ribosome recycling factor [Mycoplasma crocodyli MP145] Length = 183 Score = 177 bits (449), Expect = 7e-43, Method: Composition-based stats. Identities = 54/186 (29%), Positives = 98/186 (52%), Gaps = 3/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M + L I+D I+ K ++ + TGR +P ++ ++V Y + PL +++N++V Sbjct: 1 MELDLYLLEIEDAAQKAINHYKFELSKMSTGRANPQIIKGIRVTYYDTPTPLEELSNISV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EP+ L++ +D V + + + +NLG+ P+ EG +R+ P T ERR +VK Sbjct: 61 PEPQQLLIKPYDISSVRDIVKALTNANLGILPVDEGHQIRMTFPTLTTERRKEIVKSLSK 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 Y E +K+++RN R+D +K + SED+ IQK D + I+ +EK+ Sbjct: 121 YTEAAKVTIRNARQDVNKSIKN---DEELSEDIEKRYLEAIQKEVDKYTEIINDLTKEKE 177 Query: 181 KEIMHF 186 ++M Sbjct: 178 NDLMKL 183 >gi|197127175|gb|ACH43673.1| putative mitochondrial ribosome recycling factor isoform 1 [Taeniopygia guttata] Length = 259 Score = 177 bits (449), Expect = 8e-43, Method: Composition-based stats. Identities = 61/184 (33%), Positives = 99/184 (53%), Gaps = 3/184 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 +I+L+ + M I LK+D + R SP LD + V PLNQ+ ++ Sbjct: 77 EDIINLEETNEDMQAVIEALKEDFSRNLSVRTSPGALDHITVMTKDGKFPLNQLGQISQK 136 Query: 62 EPRMLVVSV-WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 P++++V++ E A+ + I ES + LNP V+G V+R+PVP+ T E R +L K+A Sbjct: 137 SPQLMIVNMTSFPESTAAAAKAIRESGMNLNPEVDGTVIRVPVPKVTREHRESLAKLAKQ 196 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 + KSK ++R +R + +KKS+ K SED + LE IQ++ D +D K Sbjct: 197 FTNKSKEALRKVRSKSITQVKKSK--NKVSEDTIWLLEKQIQQMADEAATEMDKLLAAKT 254 Query: 181 KEIM 184 KE++ Sbjct: 255 KELL 258 >gi|15606111|ref|NP_213488.1| ribosome recycling factor [Aquifex aeolicus VF5] gi|3914876|sp|O66928|RRF_AQUAE RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|14277735|pdb|1GE9|A Chain A, Solution Structure Of The Ribosome Recycling Factor gi|2983294|gb|AAC06886.1| ribosome recycling factor [Aquifex aeolicus VF5] Length = 184 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 64/180 (35%), Positives = 105/180 (58%), Gaps = 4/180 (2%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + + M + + K ++ LRT R S ++++ +KVE YGS VP+ Q+ ++V E + Sbjct: 9 FKEAEKDMKKAVEYYKNEIAGLRTSRASTALVEEIKVEYYGSKVPIKQLGTISVPEHNQI 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+ VWD+ V ++E+ I E L LNP V+G V+R+ +P TEERR LV++ H E+++ Sbjct: 69 VIQVWDQNAVPAIEKAIREE-LNLNPTVQGNVIRVTLPPLTEERRRELVRLLHKITEEAR 127 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 + VRN+RR+ + +++ SED +QK+TD I I+ E K+KEIM Sbjct: 128 VRVRNVRREAKEMIEELE---GISEDEKKRALERLQKLTDKYIDEINKLMEAKEKEIMSV 184 >gi|85057831|ref|YP_456747.1| ribosome recycling factor [Aster yellows witches'-broom phytoplasma AYWB] gi|123518096|sp|Q2NIS5|RRF_AYWBP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|84789936|gb|ABC65668.1| ribosome recycling factor [Aster yellows witches'-broom phytoplasma AYWB] Length = 184 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 57/177 (32%), Positives = 103/177 (58%), Gaps = 4/177 (2%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++ +M + K+ +RTG +P++LD + V YG+ L +A+++V E + Sbjct: 9 LASLEIKMTQAQELMLKNFCDIRTGTANPNILDKITVNYYGATTFLKTLASISVSEGNQI 68 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + +D ++ ++++ + SNLG+ P +G V+R+ P+ TEERR AL+K +EK+K Sbjct: 69 NIKPYDSNLIPNIKKVLLASNLGITPQTDGVVVRLVFPKPTEERRKALMKEVEQLSEKTK 128 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +++RN+RR+G D +KK + ++D+ N IQ +TD IK ID K E+ Sbjct: 129 VAIRNVRREGNDKIKKV----ELTKDLETFYLNQIQTLTDKNIKLIDKQTATKNIEL 181 >gi|332226320|ref|XP_003262337.1| PREDICTED: ribosome-recycling factor, mitochondrial-like [Nomascus leucogenys] Length = 262 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 56/184 (30%), Positives = 100/184 (54%), Gaps = 3/184 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 +I+L+ + + M I LK + R SP LD + V + LNQ++ +++ Sbjct: 80 EDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMK 139 Query: 62 EPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 P++++V++ E A+ + I ES + LNP VEG ++R+P+P+ E R LVK+A Sbjct: 140 SPQLILVNMASSPECTAAAIKAIRESGMNLNPEVEGALIRVPIPQVIREHREMLVKLAKQ 199 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 K+K S+R + + ++ LKKS+ + SED + +E I ++ D T+ +D K Sbjct: 200 NTNKAKYSLRKVCTNAVNKLKKSKDT--VSEDTIRLIEKQISQMADDTVAELDRHLAVKT 257 Query: 181 KEIM 184 KE++ Sbjct: 258 KELL 261 >gi|118404150|ref|NP_001072392.1| mitochondrial ribosome recycling factor [Xenopus (Silurana) tropicalis] gi|111305781|gb|AAI21590.1| mitochondrial ribosome recycling factor [Xenopus (Silurana) tropicalis] Length = 252 Score = 175 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 53/184 (28%), Positives = 94/184 (51%), Gaps = 3/184 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 +I+L+++K M + LK+D + R SP D + V PLNQ+ +++ Sbjct: 70 EDIINLEDVKQEMKSILENLKEDFTKNLSIRTSPGAFDHITVTTKDGKFPLNQLGQISLK 129 Query: 62 EPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 P++ ++++ E + + +S + LNP ++G ++R+PVP+ T E R L K+A Sbjct: 130 SPQLFIINMASFPESATAAVNALRDSQMNLNPELDGTIIRVPVPQVTREHRENLTKLAKQ 189 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 K+K S+R R + +KK + SED+V LE IQ++ D +D K Sbjct: 190 LTNKAKDSLRKARTGAVQEVKKCK--EGVSEDIVKLLEKQIQQMADDIATELDKQLATKT 247 Query: 181 KEIM 184 KE++ Sbjct: 248 KELL 251 >gi|228966769|ref|ZP_04127813.1| Ribosome-recycling factor [Bacillus thuringiensis serovar sotto str. T04001] gi|228792868|gb|EEM40426.1| Ribosome-recycling factor [Bacillus thuringiensis serovar sotto str. T04001] Length = 142 Score = 175 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 61/128 (47%), Positives = 86/128 (67%) Query: 54 QVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLA 113 Q+AN+TV E R+LV+ +DK + +E+ I +++LGLNP +G V+RI P TEERR Sbjct: 2 QLANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRD 61 Query: 114 LVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNID 173 LVKV YAE++K++VRN+RRDG D LKK K+G+ +ED + DIQK TD I +D Sbjct: 62 LVKVVKKYAEEAKVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVD 121 Query: 174 SFFEEKKK 181 + K+K Sbjct: 122 EIAKNKRK 129 >gi|88608154|ref|YP_506809.1| ribosome recycling factor [Neorickettsia sennetsu str. Miyayama] gi|123491285|sp|Q2GCI7|RRF_NEOSM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|88600323|gb|ABD45791.1| ribosome recycling factor [Neorickettsia sennetsu str. Miyayama] Length = 185 Score = 175 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 72/180 (40%), Positives = 110/180 (61%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ D++ + D+ +R+G +S S+LD V V + + LNQVA+++V+ +ML Sbjct: 6 IKETNDKLRSSYEVFLSDLKGIRSGSLSVSILDGVIVSTHMGKLRLNQVASLSVVNNKML 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V VWDK V +V+ I SNLG+NPIVEG VLR+PVP+ TEERR LVKV Y +++K Sbjct: 66 SVQVWDKSTVGAVKDAILTSNLGMNPIVEGSVLRLPVPDLTEERRKELVKVLKKYGDRAK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VRNIRRD + +K K+ + SE+ + +L I KI ID +K+ +I+ Sbjct: 126 VAVRNIRRDAISRIKVLEKAKEISENDMHALLKKIDKIISEEDARIDDAVSKKETDILKV 185 >gi|37498991|gb|AAQ91586.1| ribosome recycling factor [Helicobacter mustelae] Length = 139 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 52/139 (37%), Positives = 85/139 (61%) Query: 36 SMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVE 95 ++LD VKV+ YG+ PLNQV +V + ++++ W+K ++ +ER I E+N+G+NP + Sbjct: 1 NILDNVKVDYYGTPTPLNQVGSVIAQDATTILITPWEKNLLKDIERAIQEANIGVNPNND 60 Query: 96 GQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVA 155 G+ +++ P T+E+R + K A EK+KI++RNIR+D + +KK K +ED Sbjct: 61 GETIKLFFPPMTQEQRKEIAKDTKAMGEKAKIAIRNIRQDSNNQIKKLEKDKNITEDESK 120 Query: 156 SLENDIQKITDSTIKNIDS 174 + IQK TD K ID Sbjct: 121 KAHDTIQKYTDEYAKKIDK 139 >gi|66827879|ref|XP_647294.1| hypothetical protein DDB_G0268518 [Dictyostelium discoideum AX4] gi|60475777|gb|EAL73712.1| hypothetical protein DDB_G0268518 [Dictyostelium discoideum AX4] Length = 263 Score = 174 bits (441), Expect = 6e-42, Method: Composition-based stats. Identities = 59/179 (32%), Positives = 108/179 (60%), Gaps = 4/179 (2%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 +D+ ++ + TI ++ +++ +R GRV P +L+ + VE ++ L +A +T+ + Sbjct: 86 VDISSVSSQGDKTIEYVSRELGNIRFGRVGPELLERINVETPSGNLLLPHMAMITIKDSL 145 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 L ++++D ++++VER + S LGLNP +R+ +P+ T++ R L+K + +E Sbjct: 146 TLNITLYDSSLLSNVERALTNSGLGLNPQTFDTTIRVSLPKPTQDLRQKLIKQVNTISED 205 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +K+S+R R+DGMD LK+ + ++D +LE +IQKITD IK+I E K KEI Sbjct: 206 AKVSIRRHRKDGMDILKRYK----LTKDDEKTLEKNIQKITDDYIKSITKITETKLKEI 260 >gi|15828690|ref|NP_326050.1| ribosome recycling factor (ribosome releasing factor) [Mycoplasma pulmonis UAB CTIP] gi|22001949|sp|Q98QZ1|RRF_MYCPU RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|14089632|emb|CAC13392.1| RIBOSOME RECYCLING FACTOR (RIBOSOME RELEASING FACTOR) [Mycoplasma pulmonis] Length = 187 Score = 174 bits (441), Expect = 7e-42, Method: Composition-based stats. Identities = 50/186 (26%), Positives = 104/186 (55%), Gaps = 4/186 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N+V ++++ + +S + ++ + TGR +P ++ +KV Y +PL Q++N++V Sbjct: 6 INEVF--STLEEKSMNVVSNFEFNLSKISTGRANPQLIKNIKVSYYEELIPLEQISNISV 63 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 EP+ L++ +D + + + + +NL + + EG +R+ P +RR LVK + Sbjct: 64 PEPQQLLIKPFDHNITKEIHKSLLLANLDVAIVNEGNQIRLNFPALNTQRRKELVKSLNK 123 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 + E++++S+R +R++ +K + + SED + E IQ I DS I+ ID + K+ Sbjct: 124 FTEQARVSIRLLRQESNKKIKSFK--SEISEDDIKKYETKIQTINDSYIEQIDEITKRKE 181 Query: 181 KEIMHF 186 +E+M Sbjct: 182 RELMEI 187 >gi|326930532|ref|XP_003211400.1| PREDICTED: ribosome-recycling factor, mitochondrial-like [Meleagris gallopavo] Length = 267 Score = 173 bits (440), Expect = 8e-42, Method: Composition-based stats. Identities = 59/184 (32%), Positives = 96/184 (52%), Gaps = 3/184 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 +I+L+ M + LK+D R S LD + V PLNQ+ ++ Sbjct: 85 EDIINLEETSADMQAVVEALKEDFNRNLNVRTSQGALDHIIVTTKDGKFPLNQLGQISQK 144 Query: 62 EPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 P+++VV++ + E A+ + I ES + LNP V+G ++R+PVP+ T E R L K+A Sbjct: 145 SPQLIVVNMINFPESTAAAMKAIRESGMNLNPEVDGTLIRVPVPKVTREHREGLAKLAKQ 204 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 KSK ++R +R ++ +KK + K SED + LE IQ++ DS +D K Sbjct: 205 STNKSKEALRKVRSKSINQVKKFK--SKVSEDTIWLLEKQIQQMADSAAAEMDKLLAAKT 262 Query: 181 KEIM 184 KE++ Sbjct: 263 KELL 266 >gi|148670216|gb|EDL02163.1| mCG10533, isoform CRA_c [Mus musculus] Length = 345 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 53/181 (29%), Positives = 94/181 (51%), Gaps = 3/181 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 +I L+ + + M + LK + R + LD + V V L+Q+ +++ Sbjct: 80 EDIISLEEVDEDMKSVMEALKDNFNRTLNIRTASGSLDHITVVTADGKVALSQIGQISMK 139 Query: 62 EPRMLVVSVW-DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 P++++V++ E A+ + I S + LNP VEG ++R+P+P+ T E R LVK+A Sbjct: 140 SPQVILVNMAIFPECTAAAIKAIRGSRMNLNPEVEGTLIRVPIPKLTREHREMLVKLAKQ 199 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 K+K ++R + + M+ LKKS+ K SED + +E I +I D T+ +D + Sbjct: 200 NTNKAKENLRKVCTNAMNKLKKSK--DKTSEDTIRLMEKQISQIADDTVAELDQHLAARP 257 Query: 181 K 181 K Sbjct: 258 K 258 >gi|119607927|gb|EAW87521.1| mitochondrial ribosome recycling factor, isoform CRA_b [Homo sapiens] Length = 319 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 54/167 (32%), Positives = 93/167 (55%), Gaps = 3/167 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 +I+L+ + + M I LK + R SP LD + V + LNQ++ +++ Sbjct: 154 EDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMK 213 Query: 62 EPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 P++++V++ E A+ + I ES + LNP VEG ++R+P+P+ T E R LVK+A Sbjct: 214 SPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPQVTREHREMLVKLAKQ 273 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDS 167 K+K S+R +R + M+ LKKS+ + SED + +E I ++ D Sbjct: 274 NTNKAKDSLRKVRTNSMNKLKKSKDT--VSEDTIRLIEKQISQMADD 318 >gi|55958151|emb|CAI14713.1| mitochondrial ribosome recycling factor [Homo sapiens] Length = 218 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 59/184 (32%), Positives = 102/184 (55%), Gaps = 3/184 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 +I+L+ + + M I LK + R SP LD + V + LNQ++ +++ Sbjct: 36 EDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMK 95 Query: 62 EPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 P++++V++ E A+ + I ES + LNP VEG ++R+P+P+ T E R LVK+A Sbjct: 96 SPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPQVTREHREMLVKLAKQ 155 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 K+K S+R +R + M+ LKKS+ + SED + +E I ++ D T+ +D K Sbjct: 156 NTNKAKDSLRKVRTNSMNKLKKSKDT--VSEDTIRLIEKQISQMADDTVAELDRHLAVKT 213 Query: 181 KEIM 184 KE++ Sbjct: 214 KELL 217 >gi|116515085|ref|YP_802714.1| hypothetical protein BCc_145 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285519|sp|Q057S8|RRF_BUCCC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|116256939|gb|ABJ90621.1| ribosome recycling factor [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 185 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 58/174 (33%), Positives = 102/174 (58%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 +M + K D+ +R R +P +LD + ++ YG+H L++++N+ + L +S++D Sbjct: 12 KMNKCVLNFKNDLNKIRANRATPELLDNIFIDYYGTHTALSKLSNIIIENNSTLKISLFD 71 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + SVE+ I SNLGLNPI +RI +P TE+RR +VK+ AE ++IS+RNI Sbjct: 72 ISIKNSVEKSIINSNLGLNPISSDSNIRIKIPALTEQRRKDIVKIIKNDAENTRISIRNI 131 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RR+ +K K + ++D+ ++ +IQ+ T+ IK I+ K+KE++ Sbjct: 132 RREANIQIKTLLKEKEINQDIEKQVKLEIQRYTNLFIKKINDILSIKEKELLTI 185 >gi|114626542|ref|XP_001135833.1| PREDICTED: similar to Mitochondrial ribosome recycling factor isoform 2 [Pan troglodytes] Length = 218 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 59/184 (32%), Positives = 101/184 (54%), Gaps = 3/184 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 +I+L+ + + M I LK + R SP LD + V + LNQ++ +++ Sbjct: 36 EDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMK 95 Query: 62 EPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 P++++V++ E A+ + I ES + LNP VEG ++R+P+P+ T E R LVK+A Sbjct: 96 SPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPQVTREHREMLVKLAKQ 155 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 K+K S+R +R + M+ LKKS+ SED + +E I ++ D T+ +D K Sbjct: 156 NTNKAKDSLRKVRTNSMNKLKKSK--YTVSEDTIRLIEKQISQMADDTVAELDRHLAVKT 213 Query: 181 KEIM 184 KE++ Sbjct: 214 KELL 217 >gi|297710938|ref|XP_002832116.1| PREDICTED: ribosome-recycling factor, mitochondrial-like [Pongo abelii] Length = 262 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 56/184 (30%), Positives = 98/184 (53%), Gaps = 3/184 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 +I+L+ + + M I LK + R SP LD + V + LNQ++ +++ Sbjct: 80 EDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMK 139 Query: 62 EPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 P++++V++ E A+ + I ES + LNP VEG ++R+P+P+ E R LVK+A Sbjct: 140 SPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGALIRVPIPQVIREHREMLVKLAKQ 199 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 K+K S+ + + M+ LKKS+ + SED + E I ++ D T+ +D K Sbjct: 200 NTNKAKYSLWKVCTNAMNKLKKSKDT--VSEDTIRLTEKQISQMADDTVAELDRHLAVKT 257 Query: 181 KEIM 184 KE++ Sbjct: 258 KELL 261 >gi|1149697|emb|CAA60206.1| rrf [Clostridium perfringens] Length = 132 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 59/132 (44%), Positives = 89/132 (67%) Query: 47 GSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPET 106 GS PLNQVANV+ EPR+LV++ W+K M+ +E+ I +S+LG+NP +G ++R+ VPE Sbjct: 1 GSMCPLNQVANVSSPEPRLLVITPWEKPMLKEIEKAILKSDLGINPNNDGTIIRLLVPEL 60 Query: 107 TEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITD 166 TEE R LVK E++K+++R+IR+D D +K +K G +ED + E+DIQK+TD Sbjct: 61 TEETRKNLVKNVKKVGEQAKVAIRSIRKDANDKVKNFKKEGTITEDEMKKGEDDIQKVTD 120 Query: 167 STIKNIDSFFEE 178 +K ID+ Sbjct: 121 KFVKEIDTIVAA 132 >gi|328768245|gb|EGF78292.1| hypothetical protein BATDEDRAFT_26860 [Batrachochytrium dendrobatidis JAM81] Length = 273 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 63/180 (35%), Positives = 103/180 (57%), Gaps = 3/180 (1%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 + + M + + L+KD+ +R GR +P++LD V+V+ G V L VA +TV + Sbjct: 95 FQMDKYEQLMQNAVEKLRKDLGLIRMGRANPALLDSVRVKHQGKSVALVDVAQITVKDAH 154 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIV-EGQVLRIPVPETTEERRLALVKVAHAYAE 123 LV+ V D+++V+ VE+ + ++NLGLNP L++PVP +E R ++K AE Sbjct: 155 TLVIVVSDEQLVSVVEKAVRDANLGLNPQSLPPSSLKVPVPRMAKEFRETIIKNIGRIAE 214 Query: 124 KSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 ++ +R+ R D LK++ S K + D LE DIQ++TD IK+ D+ K+KEI Sbjct: 215 ACRVRIRSARADARTALKRT--SLKPNSDQSRMLEKDIQQLTDKYIKDTDAAVLAKEKEI 272 >gi|294660229|ref|NP_852872.2| ribosome-recycling factor [Mycoplasma gallisepticum str. R(low)] gi|60416389|sp|Q7NC19|RRF_MYCGA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|284811884|gb|AAP56440.2| ribosome-recycling factor (RRF) (Ribosome-releasing factor) [Mycoplasma gallisepticum str. R(low)] gi|284930333|gb|ADC30272.1| ribosome-recycling factor (RRF) (Ribosome-releasing factor) [Mycoplasma gallisepticum str. R(high)] Length = 183 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 56/169 (33%), Positives = 98/169 (57%), Gaps = 3/169 (1%) Query: 18 ISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVA 77 I++ + ++ +R+GR + +LD V+ E YG PL ++A++++ EPR +++ ++K V Sbjct: 18 INWFEGELAKVRSGRANLKILDNVRAEYYGEQTPLIEMASLSIPEPREILIKPYEKSSVN 77 Query: 78 SVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGM 137 ++ + ++NL L P+V+G +RI +P TEE R VK A EK+K VR IRRD + Sbjct: 78 LIQAALLKANLNLTPVVDGDKIRIKLPLLTEENRKENVKKVKAVGEKAKQEVRFIRRDTL 137 Query: 138 DHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 + +K A +D+ E + KIT I IDS +K+K+++ Sbjct: 138 NKIK---SDKIADKDLNKYFEEQVDKITKKYIDQIDSILAKKEKDLLSL 183 >gi|148670214|gb|EDL02161.1| mCG10533, isoform CRA_a [Mus musculus] Length = 332 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 53/181 (29%), Positives = 94/181 (51%), Gaps = 3/181 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 +I L+ + + M + LK + R + LD + V V L+Q+ +++ Sbjct: 80 EDIISLEEVDEDMKSVMEALKDNFNRTLNIRTASGSLDHITVVTADGKVALSQIGQISMK 139 Query: 62 EPRMLVVSVW-DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 P++++V++ E A+ + I S + LNP VEG ++R+P+P+ T E R LVK+A Sbjct: 140 SPQVILVNMAIFPECTAAAIKAIRGSRMNLNPEVEGTLIRVPIPKLTREHREMLVKLAKQ 199 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 K+K ++R + + M+ LKKS+ K SED + +E I +I D T+ +D + Sbjct: 200 NTNKAKENLRKVCTNAMNKLKKSK--DKTSEDTIRLMEKQISQIADDTVAELDQHLAARP 257 Query: 181 K 181 K Sbjct: 258 K 258 >gi|284931100|gb|ADC31038.1| ribosome-recycling factor (RRF) (Ribosome-releasing factor) [Mycoplasma gallisepticum str. F] Length = 183 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 56/169 (33%), Positives = 98/169 (57%), Gaps = 3/169 (1%) Query: 18 ISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVA 77 I++ + ++ +R+GR + +LD V+ E YG PL ++A++++ EPR +++ ++K V Sbjct: 18 INWFEGELAKVRSGRANLKILDNVRAEYYGEQTPLIEMASLSIPEPREILIKPYEKSSVN 77 Query: 78 SVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGM 137 ++ + ++NL L P+V+G +RI +P TEE R VK A EK+K VR IRRD + Sbjct: 78 PIQAALLKANLNLTPVVDGDKIRIKLPLLTEENRKENVKKVKAVGEKAKQEVRFIRRDTL 137 Query: 138 DHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 + +K A +D+ E + KIT I IDS +K+K+++ Sbjct: 138 NKIK---SDKIADKDLNKYFEEQVDKITKKYIDLIDSILAKKEKDLLSL 183 >gi|197294561|ref|YP_001799102.1| ribosome recycling factor [Candidatus Phytoplasma australiense] gi|226703266|sp|B1VA77|RRF_PHYAS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|171853888|emb|CAM11850.1| Ribosome recycling factor [Candidatus Phytoplasma australiense] Length = 184 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 60/177 (33%), Positives = 104/177 (58%), Gaps = 4/177 (2%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 I+ +M + K+ + +RTG +P++L+ V + YGS PL +++++V E L + Sbjct: 12 IEKKMSQAQEVMLKNFLEIRTGYANPNILNKVNINYYGSQTPLKTLSSISVSEGTQLQIK 71 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 ++K ++ S+++ I S+LG+ P +G +LR+ P+ TEERR LVK +E++K++V Sbjct: 72 PYEKTLIPSIKKAILASDLGITPETDGVLLRLNFPKPTEERRKVLVKEVDKLSEQTKVAV 131 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RNIRRD D +KK ++D+ A IQ +TD +K I+ K KE++ F Sbjct: 132 RNIRRDANDKIKKL----ALTKDLEALYLEKIQILTDKNMKMIEKEANNKNKELLKF 184 >gi|205373430|ref|ZP_03226234.1| ribosome recycling factor [Bacillus coahuilensis m4-4] Length = 132 Score = 170 bits (433), Expect = 6e-41, Method: Composition-based stats. Identities = 57/132 (43%), Positives = 90/132 (68%) Query: 55 VANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLAL 114 +A+++V E R+LV+ +DK ++ +E+ I S+LGLNP +G ++R+ +P TEERR L Sbjct: 1 MASISVPEARLLVIQPYDKSILGEIEKAILRSDLGLNPSNDGSIIRLMIPALTEERRKEL 60 Query: 115 VKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDS 174 VK+ AE +K+++RNIRRD D LKK K+G+ +ED + +D+QK+TD I+ IDS Sbjct: 61 VKLVKKEAEDAKVAIRNIRRDTNDDLKKQEKNGEITEDQLRGYSDDVQKLTDKNIEKIDS 120 Query: 175 FFEEKKKEIMHF 186 ++K+ EIM Sbjct: 121 MTKDKENEIMSV 132 >gi|330846602|ref|XP_003295107.1| hypothetical protein DICPUDRAFT_160263 [Dictyostelium purpureum] gi|325074270|gb|EGC28370.1| hypothetical protein DICPUDRAFT_160263 [Dictyostelium purpureum] Length = 265 Score = 170 bits (431), Expect = 8e-41, Method: Composition-based stats. Identities = 59/179 (32%), Positives = 99/179 (55%), Gaps = 4/179 (2%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 IDL ++ T+ ++ ++ +R GR P +LD + VE ++ L +A VTV +P Sbjct: 88 IDLSRYQEASMKTLDYISREYGNIRFGRAGPELLDRINVETPNGNLLLPHIAMVTVKDPL 147 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 L ++++D V +VE+ I + LGL P V G V+++ +P+ T + R L+K + +E Sbjct: 148 TLNITLYDTSFVKNVEKAIQTAGLGLMPQVSGTVIKVSLPKPTNDLRQKLIKQVNTISED 207 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +K+S+R R+D MD LK + +D LE +IQK+ D + NI + K KEI Sbjct: 208 AKVSIRRHRKDAMDSLKNYK----LRKDDEKLLEKNIQKMIDDYVGNITKLTDSKLKEI 262 >gi|147799481|emb|CAN77406.1| hypothetical protein VITISV_026196 [Vitis vinifera] Length = 222 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 44/119 (36%), Positives = 75/119 (63%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +++K+RM TI ++ + ++RTGR +P++LD V+VE YG+ V L +A ++ + L+ Sbjct: 96 KDVKERMEKTIETVRTNFNSIRTGRANPAILDRVEVEYYGTPVSLKSIAQISTPDSASLL 155 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V +DK + +E+ I S+LGL P +G+V+R+ +P+ T ERR L KV E+ K Sbjct: 156 VQPYDKSSLKVIEKAIVSSDLGLTPNNDGEVIRLSLPQLTSERRKELSKVVAKQTEEGK 214 >gi|149641896|ref|XP_001512325.1| PREDICTED: similar to mitochondrial ribosome recycling factor [Ornithorhynchus anatinus] Length = 241 Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 56/184 (30%), Positives = 99/184 (53%), Gaps = 3/184 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 +I+L+ + + + LK D R S LD + V LNQ+A +++ Sbjct: 59 EDIINLEEVNRDLQTVMEALKDDFNKNLNIRTSAGALDHISVPTEDGKFSLNQLAQISMK 118 Query: 62 EPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 P++++V++ + E A+ + I ES + LNP V+G ++R+P+P+ T E R LVK+A Sbjct: 119 SPQLVLVNMANFPECTAAAIKAIRESGMNLNPEVDGTIIRVPIPKVTREHREMLVKLAKQ 178 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 K+K S+R +R + M+ LKKS+ K +ED + +E I ++ D + +D K Sbjct: 179 NTNKAKESLRKVRTNAMNKLKKSK--DKVAEDTIRLIEKKIGQMADDMVAEMDKQLAVKT 236 Query: 181 KEIM 184 KE++ Sbjct: 237 KELL 240 >gi|293363510|ref|ZP_06610266.1| ribosome recycling factor [Mycoplasma alligatoris A21JP2] gi|292552859|gb|EFF41613.1| ribosome recycling factor [Mycoplasma alligatoris A21JP2] Length = 183 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 47/171 (27%), Positives = 90/171 (52%), Gaps = 3/171 (1%) Query: 16 DTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEM 75 I+ K ++ + TGR +P ++ V+V Y + PL +++ ++V EP+ L++ +D Sbjct: 16 KAINHYKFELSKMSTGRANPQVIKGVRVNYYETLTPLEELSTISVPEPQQLLIKPYDSSS 75 Query: 76 VASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRD 135 + + + +NLG+ P+ EG +R+ P T +RR LVK E +KI +RN R++ Sbjct: 76 TKEIVKALTAANLGILPVDEGHQVRMTFPTLTTDRRKELVKSLSKLTEGAKIGIRNARQE 135 Query: 136 GMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +K + SED+ + IQK D ++ ++ +EK+ ++M Sbjct: 136 VNKAIKA---DEELSEDIEKRYLDAIQKEVDKYMELVNEITKEKESDLMKI 183 >gi|114690061|ref|XP_521248.2| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes] gi|332861573|ref|XP_003317710.1| PREDICTED: ribosome-recycling factor, mitochondrial-like [Pan troglodytes] Length = 262 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 54/184 (29%), Positives = 94/184 (51%), Gaps = 3/184 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 +I+L+ + + M I K + R SP LD + V + LNQ+ ++V Sbjct: 80 EDIINLEEVNEEMKSVIEAHKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQIRQISVK 139 Query: 62 EPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 P++++V++ E + + I ES + LNP VEG ++R+P+P+ E R LVK+A Sbjct: 140 LPQLILVNMASFPECTVAAIKAIRESGMNLNPEVEGTLIRVPIPQVIREHREMLVKLAKQ 199 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 K+K S+ + + M+ LKKS+ + SED + E I ++ D T+ + K Sbjct: 200 NTNKAKYSLLKVCTNAMNKLKKSKDT--VSEDTIRLTEKQISQMADDTVAELYRHLAVKN 257 Query: 181 KEIM 184 KE++ Sbjct: 258 KELL 261 >gi|325181721|emb|CCA16176.1| ribosomerecycling factor putative [Albugo laibachii Nc14] Length = 267 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 57/186 (30%), Positives = 99/186 (53%), Gaps = 7/186 (3%) Query: 2 NQVIDLQNIKDR----MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVAN 57 + D++ +K + M I + + +R G+ + D V V+AYG VPL Q+A Sbjct: 82 SDEFDVEELKSKTRRNMNGAILNFTRQLCQMRPGKADGGIFDTVHVQAYGQSVPLPQLAQ 141 Query: 58 VTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKV 117 V V L V+V+D+ ++ V++ I + N + E L + P+ ++E R L K Sbjct: 142 VAVTGAYSLSVNVYDQSLLQEVKQTIAKINACYSIREEISSLEVTFPKMSKETRSELSKA 201 Query: 118 AHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFE 177 AE+++ VR +R+D M+ LK KS + +ED + +++ IQK+TD I IDS Sbjct: 202 VKKQAEQARSHVRRVRQDSMNILK---KSKEITEDDLKEIKDAIQKVTDQCISEIDSLLA 258 Query: 178 EKKKEI 183 +K+K++ Sbjct: 259 QKEKDL 264 >gi|195377904|ref|XP_002047727.1| GJ11766 [Drosophila virilis] gi|194154885|gb|EDW70069.1| GJ11766 [Drosophila virilis] Length = 260 Score = 167 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 45/185 (24%), Positives = 95/185 (51%), Gaps = 4/185 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 + ++I+L ++ +M ++ +K D + + R + +D ++++ G+ L ++A ++ Sbjct: 76 LRELINLDSLNAQMEKSVLQMKDDFIKNLSLRSTSGAIDSLRIKVDGAEHELQELAQISR 135 Query: 61 LEPRMLVVSV-WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 P+ +VV++ + + V R I +S + LNP +G L IP+P+ T+E R L K A Sbjct: 136 KNPKTIVVNMIAFPQTIPDVLRAIEKSGMNLNPQQDGTTLFIPIPKVTKEHREHLSKNAK 195 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 A K + ++R+I+ ++K +K +D + + + I D I D K Sbjct: 196 AMFIKYRDAIRDIQ---NTQIRKLKKQTDIGKDDAFAAQTQVTAIADKYIAEADKLLASK 252 Query: 180 KKEIM 184 +KE++ Sbjct: 253 QKELL 257 >gi|301094211|ref|XP_002997949.1| ribosome-recycling factor, putative [Phytophthora infestans T30-4] gi|262109735|gb|EEY67787.1| ribosome-recycling factor, putative [Phytophthora infestans T30-4] Length = 259 Score = 166 bits (422), Expect = 9e-40, Method: Composition-based stats. Identities = 58/177 (32%), Positives = 90/177 (50%), Gaps = 2/177 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ M + + + +R GR + D + V AYG HVPL QVA V V L Sbjct: 82 LEKANKNMNGAVVNFTRALSQMRPGRADAGIFDELHVPAYGQHVPLAQVAQVAVAGTHAL 141 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+V+D ++ V++ I +N + + L I P+ ++E R L+K AE+++ Sbjct: 142 SVTVYDPSLMPDVKKAIEGTNAVYSVREDVSSLEISFPKMSKETRADLLKATKKQAEQAR 201 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 VR +R+D M+H KK + + SED V + IQK TDS I ID K+K++ Sbjct: 202 QHVRRVRQDAMNHAKKLKDA--VSEDDVEVQKERIQKATDSAIAEIDKLLAAKEKDL 256 >gi|281205054|gb|EFA79247.1| hypothetical protein PPL_07665 [Polysphondylium pallidum PN500] Length = 369 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 59/180 (32%), Positives = 107/180 (59%), Gaps = 4/180 (2%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 +DL +K T+ FL++ +R GR P +LDL+ VE + +NQ+A VT+ +P Sbjct: 190 VDLNTMKSSCDATVDFLRRGFGNIRCGRTGPELLDLITVETPNGPMSMNQIAMVTIKDPL 249 Query: 65 MLVVSVWDKEMVASVERGIHE-SNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAE 123 L ++++D ++ VE+ + S+LG++P ++ Q +++ +P+ T+E R L+K + +E Sbjct: 250 TLHLTLFDPSLLKHVEKALRSRSDLGMSPQIQDQFIKLTLPKPTQELRQNLIKSVNNLSE 309 Query: 124 KSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 ++K+S+R R++GMD +KK K K E ++ ++QKITD I + + K KEI Sbjct: 310 QAKVSIRRHRKEGMDLIKKKYKLIKDDE---QKIDKNVQKITDDYIATLTKLTDAKIKEI 366 >gi|325278093|ref|ZP_08143609.1| ribosome recycling factor [Pseudomonas sp. TJI-51] gi|324096770|gb|EGB95100.1| ribosome recycling factor [Pseudomonas sp. TJI-51] Length = 133 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 56/127 (44%), Positives = 85/127 (66%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ L +++ +RTGR PS+LD V+V A+GS +PLNQVA +TV + R L Sbjct: 7 KDAQERMTKSLEALARNLAAIRTGRAHPSILDTVRVTAWGSEMPLNQVAAITVEDARTLK 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + DK + A++E+ I S+LGLNP G +R+P+P TEE R K A A AE +K+ Sbjct: 67 IVAHDKNLSAAIEKAILTSDLGLNPSSAGTTIRVPMPALTEETRKGYTKQASAVAEDAKV 126 Query: 128 SVRNIRR 134 +VRN+RR Sbjct: 127 AVRNVRR 133 >gi|198467224|ref|XP_001354314.2| GA18189 [Drosophila pseudoobscura pseudoobscura] gi|198149556|gb|EAL31367.2| GA18189 [Drosophila pseudoobscura pseudoobscura] Length = 261 Score = 165 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 46/185 (24%), Positives = 97/185 (52%), Gaps = 4/185 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 + ++I+L ++ +M ++ +K+D + + R + +D ++++ G L ++A ++ Sbjct: 77 LREIINLDSLNTQMERSVQQMKEDFIKHLSLRSTSGAIDTLRIKVDGDEHELQELAQISR 136 Query: 61 LEPRMLVVSV-WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 P+ ++V++ + + V R I +S + LNP +G L IP+P+ T+E R L K A Sbjct: 137 KNPKTIIVNMIAFPQTIPDVLRAIEKSGMNLNPQQDGTTLFIPIPKVTKEHRENLSKNAK 196 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 A K + ++RN++ DH++K +K +D + + + I D I D K Sbjct: 197 ALFVKYRDAIRNVQ---NDHIRKLKKQPDVGKDDAFAAQTQVTAIGDKFIAEADKLLASK 253 Query: 180 KKEIM 184 +KE++ Sbjct: 254 QKELL 258 >gi|194751343|ref|XP_001957986.1| GF10686 [Drosophila ananassae] gi|190625268|gb|EDV40792.1| GF10686 [Drosophila ananassae] Length = 255 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 44/185 (23%), Positives = 96/185 (51%), Gaps = 4/185 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 + ++++ + +M ++S +K D + + R + +D ++V+ G L ++A ++ Sbjct: 72 LREILNFDGLNSQMQKSVSQMKDDFVKHLSLRSTSGAIDTLRVKVDGQEHELQELAQISR 131 Query: 61 LEPRMLVVSV-WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 P+ ++V++ + + V + I +S + LNP +G L IP+P+ T+E R L K A Sbjct: 132 KNPKTIIVNMIAFPQTIPDVLKAIEKSGMNLNPQQDGTTLFIPIPKVTKEHRENLSKNAK 191 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 A K + ++R ++ M+H++K +K + +D + + + I D I D K Sbjct: 192 ALFVKYRDAIRGVQ---MEHIRKLKKQPELGKDDAFAAQAQVTAIADRYIGEADKLLATK 248 Query: 180 KKEIM 184 +KE++ Sbjct: 249 QKELL 253 >gi|270643372|ref|ZP_06222161.1| ribosome recycling factor [Haemophilus influenzae HK1212] gi|270317279|gb|EFA28844.1| ribosome recycling factor [Haemophilus influenzae HK1212] Length = 127 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 55/127 (43%), Positives = 80/127 (62%) Query: 56 ANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALV 115 ANV + R L V+V+D+ ++++VE+ I S+LGLNP G +RIP+P TEERR L+ Sbjct: 1 ANVVAEDARTLAVTVFDRSLISAVEKAILTSDLGLNPSSAGTTIRIPLPPLTEERRRDLI 60 Query: 116 KVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSF 175 K+ E+ K++VRN+RRD D +K K + SE+ E +IQKITD IK +D Sbjct: 61 KIVKGEGEQGKVAVRNVRRDANDKIKALLKDKEISENEQHKAEEEIQKITDIYIKKVDEV 120 Query: 176 FEEKKKE 182 +K+KE Sbjct: 121 LADKEKE 127 >gi|28493413|ref|NP_787574.1| ribosome recycling factor [Tropheryma whipplei str. Twist] gi|28572476|ref|NP_789256.1| ribosome recycling factor [Tropheryma whipplei TW08/27] gi|44888329|sp|Q83G73|RRF_TROWT RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|44888330|sp|Q83HZ5|RRF_TROW8 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|28410608|emb|CAD66994.1| ribosome recycling factor [Tropheryma whipplei TW08/27] gi|28476454|gb|AAO44543.1| ribosome recycling factor [Tropheryma whipplei str. Twist] Length = 181 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 52/179 (29%), Positives = 97/179 (54%), Gaps = 6/179 (3%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 ++ +RM TI LK+ +++ +GRV+ + V V+ G+ VPL +A++ VL +VV Sbjct: 8 DVSERMNKTIELLKEQFLSIHSGRVNSGQFEKVMVDCEGASVPLVSLASIRVLNANTIVV 67 Query: 69 SVWDKEMVASVERGIHE-SNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +D +++ ++R + N+G P +G+ ++I +P+ TE RR VK A AE++++ Sbjct: 68 TPYDSALLSQIDRALRNVPNIG-TPGNDGECIKIVMPQLTEARRHEYVKQARVKAEEARV 126 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 S RNIRR L ++D + E ++ K+T I +D K+ E++ Sbjct: 127 SARNIRRKARASLDAM----GLAKDEIVRREKELDKLTKDVISVVDDLLRHKESELLRL 181 >gi|195429112|ref|XP_002062608.1| GK17631 [Drosophila willistoni] gi|194158693|gb|EDW73594.1| GK17631 [Drosophila willistoni] Length = 257 Score = 164 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 45/185 (24%), Positives = 94/185 (50%), Gaps = 3/185 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 + ++I+L + +M ++ +K D + + R + +D ++++ G+ L ++A ++ Sbjct: 72 LREIINLDQLNTQMEKSVQQMKDDFIKHLSLRSTSGAIDSLRIKVDGNVHELQELAQISR 131 Query: 61 LEPRMLVVSV-WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 P+ +++++ + + V R I +S + LNP +G L IP+P+ T+E R L K A Sbjct: 132 KNPKTIIINMIAFPQTIPDVLRAIEKSGMNLNPQQDGTTLFIPIPKVTKEHREHLSKNAK 191 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 A K + ++R ++ D + LKK + +D +N + I D I D K Sbjct: 192 ALYIKYRDAIRQVQNDHIRKLKKQ--ADDIGKDDAFKAQNQVTAIADKYIAEADKLLATK 249 Query: 180 KKEIM 184 +KE++ Sbjct: 250 QKELL 254 >gi|262340905|ref|YP_003283760.1| ribosome recycling factor [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272242|gb|ACY40150.1| ribosome recycling factor [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 184 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 67/188 (35%), Positives = 110/188 (58%), Gaps = 6/188 (3%) Query: 1 MNQVIDLQ-NIKDRMGDTISFLKKDMMTLRTGRVS-PSMLDLVKVEAYGSHVPLNQVANV 58 M+++ D+ + K M + LK+++ +R G S S+L+ +K++ YGS L +VAN+ Sbjct: 1 MDELNDIFFSCKKDMEKILKQLKEEIHRIRLGSKSVASILEKIKIKCYGSSFLLIEVANI 60 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 TV++ + + WD+ +V+ +++ I ++NLG P +G+ + I +P TEE R L+K Sbjct: 61 TVVDNMNITIHPWDRSIVSYIDKAIIDANLGFMPTNKGESIHIHLPIITEEGRKNLMKKI 120 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 + E +KI +RN+R+ H+KK + SED S EN IQKIT I ID FF Sbjct: 121 KSQTEHAKILIRNVRKKNNQHIKKLK----ISEDFSKSGENRIQKITSEYIHQIDDFFLY 176 Query: 179 KKKEIMHF 186 K+KEI+ Sbjct: 177 KEKEILRI 184 >gi|148670215|gb|EDL02162.1| mCG10533, isoform CRA_b [Mus musculus] Length = 264 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 53/181 (29%), Positives = 94/181 (51%), Gaps = 3/181 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 +I L+ + + M + LK + R + LD + V V L+Q+ +++ Sbjct: 80 EDIISLEEVDEDMKSVMEALKDNFNRTLNIRTASGSLDHITVVTADGKVALSQIGQISMK 139 Query: 62 EPRMLVVSVW-DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 P++++V++ E A+ + I S + LNP VEG ++R+P+P+ T E R LVK+A Sbjct: 140 SPQVILVNMAIFPECTAAAIKAIRGSRMNLNPEVEGTLIRVPIPKLTREHREMLVKLAKQ 199 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 K+K ++R + + M+ LKKS+ K SED + +E I +I D T+ +D + Sbjct: 200 NTNKAKENLRKVCTNAMNKLKKSK--DKTSEDTIRLMEKQISQIADDTVAELDQHLAARP 257 Query: 181 K 181 K Sbjct: 258 K 258 >gi|26554405|ref|NP_758339.1| ribosome recycling factor [Mycoplasma penetrans HF-2] gi|44888332|sp|Q8EUH0|RRF_MYCPE RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|26454415|dbj|BAC44743.1| ribosome recycling factor [Mycoplasma penetrans HF-2] Length = 183 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 61/186 (32%), Positives = 98/186 (52%), Gaps = 3/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M I + + + +L + +++GR +P +LD V VEAYG L ++AN+ V Sbjct: 1 MEWKIYKEEFDKKAEVKLEWLDSEFNKIKSGRPNPKILDHVMVEAYGDKSKLFEIANMQV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 +E + +VV +DK ++ + I + NLGL+ V+ LRI P TEE R A VK Sbjct: 61 VEGKQIVVKPYDKTLLHDINSAIQKENLGLSVQVDADSLRIIFPSPTEETRKASVKKVKE 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 ++E+ K+ +RNIR+D +K + ED + E D+ K+T +D F EK+ Sbjct: 121 FSEQVKVEIRNIRKDVHHKIK---DDKELREDELKWYEEDLDKLTREWNAKVDKAFAEKE 177 Query: 181 KEIMHF 186 KE+M Sbjct: 178 KELMTI 183 >gi|119632273|gb|EAX11868.1| hCG1980694, isoform CRA_a [Homo sapiens] Length = 262 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 53/184 (28%), Positives = 93/184 (50%), Gaps = 3/184 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 +I+L+ + + M I K + SP LD + V + LNQ+ ++V Sbjct: 80 EDIINLEEVNEEMKSVIEARKDNFNKTLNIGTSPGSLDKIAVVTADGKLALNQIRQISVK 139 Query: 62 EPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 P++++V++ E + + I ES + LNP VEG ++R+P+P+ E R LVK+A Sbjct: 140 LPQLILVNMASFPEFTVAAIKAIRESGMNLNPEVEGTLIRVPIPQVIREHREMLVKLAKQ 199 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 K+K S+R + + M+ LKKS+ + SE + E I ++ D T+ + K Sbjct: 200 NTNKAKYSLRKVCTNAMNKLKKSKDT--VSEGTIRLTEKQISQMADDTVAELYRHLAVKT 257 Query: 181 KEIM 184 KE++ Sbjct: 258 KELL 261 >gi|300214368|gb|ADJ78784.1| Ribosome-recycling factor (RRF) (Ribosome-releasing factor) [Lactobacillus salivarius CECT 5713] Length = 132 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 59/131 (45%), Positives = 91/131 (69%) Query: 55 VANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLAL 114 +A ++V E R+L+V+ +DK + ++E I S+LG+ P+ +G +R+ +P+ TEERR L Sbjct: 1 MAQISVPEARVLLVTPYDKSSLKNIEHAIMASDLGIAPMNDGTAIRLVIPQLTEERRKEL 60 Query: 115 VKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDS 174 K A +E K++VRNIRRD MD LKK++K+G +ED + LEN QK+TD +IKNID Sbjct: 61 AKQVKAVSETGKVAVRNIRRDMMDALKKAQKNGDLTEDDLRDLENQAQKVTDESIKNIDK 120 Query: 175 FFEEKKKEIMH 185 E+K+KE++ Sbjct: 121 ITEDKEKEVLE 131 >gi|298714900|emb|CBJ27656.1| ribosome recycling factor [Ectocarpus siliculosus] Length = 271 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 70/187 (37%), Positives = 101/187 (54%), Gaps = 3/187 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 ++ + + K R + L +D LR G+ P MLD V+VE+YGS L VA ++ Sbjct: 87 LDDIAGIPESKARFDKVLQGLTRDFQGLRGGKTDPGMLDNVRVESYGSMTNLASVAQASM 146 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQ-VLRIPVPETTEERRLALVKVAH 119 P+++V+SV+D M VE I E +GLNP EGQ + +P+P+ T+E R A+ KVA Sbjct: 147 KGPQLIVLSVYDPGMTKVVEDAIRECGMGLNPNSEGQGQVHVPIPKPTKESREAVAKVAA 206 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 +AEKSK+ VR IR +D +KK K ED V +I + T I E+K Sbjct: 207 KHAEKSKVVVRGIRHKILDQIKK--KKDSFPEDDVHMRIKEIDQCTKDAEAGIAGMLEKK 264 Query: 180 KKEIMHF 186 K EI+ Sbjct: 265 KAEILTV 271 >gi|194867771|ref|XP_001972146.1| GG15364 [Drosophila erecta] gi|190653929|gb|EDV51172.1| GG15364 [Drosophila erecta] Length = 254 Score = 161 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 94/185 (50%), Gaps = 4/185 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 + ++++ + +M ++ +K+D + + R + +D ++++ G L ++A ++ Sbjct: 71 LREILNFDGLNSQMQKSVMQMKEDFVKHLSLRSTSGAIDTLRIKVDGQEHELQELAQISR 130 Query: 61 LEPRMLVVSV-WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 P+ ++V++ + + V + I +S + LNP +G L IP+P+ T+E R L K A Sbjct: 131 KNPKTIIVNMIGFPQTIPDVLKAIEKSGMNLNPQQDGTTLFIPIPKVTKEHRENLSKNAK 190 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 A K + ++R ++ + ++K +K + +D + + + I D I D K Sbjct: 191 ALFVKYRDAIRGVQ---NEQIRKLKKQPELGKDDAFAAQAQVTAIADRFISEADKLLASK 247 Query: 180 KKEIM 184 +KE++ Sbjct: 248 QKELL 252 >gi|32491138|ref|NP_871392.1| hypothetical protein WGLp389 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|30173140|sp|Q8D2G5|RRF_WIGBR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|25166345|dbj|BAC24535.1| frr [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 185 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 59/171 (34%), Positives = 108/171 (63%), Gaps = 2/171 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N++ +N RM +I F KK++ +RT RVSPS+++ + + YG+ VPL++++N+ Sbjct: 2 INEIY--ENSNSRMKKSIDFFKKNISKIRTNRVSPSLIENIYINCYGTSVPLSKLSNILS 59 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + +L ++V+D ++ +E+ I S+LG+NP ++ +RI P+ TE RR L+K+ + Sbjct: 60 EKSNILKINVFDNNIIKKIEQAILSSDLGVNPQIQENYIRIEFPKLTEARRFELIKLINK 119 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKN 171 AE++ IS+RNIRRD + +KK K+ +D + IQ +T+S I++ Sbjct: 120 EAEQNIISIRNIRRDANEKIKKLIKAKTIGKDEDKKFQEVIQNLTNSRIED 170 >gi|195490897|ref|XP_002093333.1| GE20827 [Drosophila yakuba] gi|194179434|gb|EDW93045.1| GE20827 [Drosophila yakuba] Length = 254 Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 94/185 (50%), Gaps = 4/185 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 + ++++ + +M ++ +K+D + + R + +D ++++ G L ++A ++ Sbjct: 71 LREILNFDGLNSQMQKSVMQMKEDFVKHLSLRSTSGAIDTLRIKVDGQEHELQELAQISR 130 Query: 61 LEPRMLVVSV-WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 P+ ++V++ + + V + I +S + LNP +G L IP+P+ T+E R L K A Sbjct: 131 KNPKTIIVNMIGFPQTIPDVLKAIEKSGMNLNPQQDGTTLFIPIPKVTKEHRENLSKNAK 190 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 A K + ++R ++ + ++K +K + +D + + + I D I D K Sbjct: 191 ALFVKYRDAIRGVQ---NEQIRKLKKQPELGKDDAFAAQAQVTAIADRFISEADKLLASK 247 Query: 180 KKEIM 184 +KE++ Sbjct: 248 QKELL 252 >gi|260362405|ref|ZP_05775360.1| ribosome recycling factor [Vibrio parahaemolyticus K5030] gi|308113970|gb|EFO51510.1| ribosome recycling factor [Vibrio parahaemolyticus K5030] Length = 124 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 54/124 (43%), Positives = 77/124 (62%) Query: 63 PRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 R L ++V+DKE+ VE+ I S+LGLNP+ G ++R+P+P TEERR LVK+ A Sbjct: 1 ARTLAITVFDKELTQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEA 60 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 E +++VRNIRRD + LK K + SED + +IQK+TD +K ID K+KE Sbjct: 61 EGGRVAVRNIRRDANNDLKALLKDKEISEDEDRKAQEEIQKLTDVAVKKIDEVLAAKEKE 120 Query: 183 IMHF 186 +M Sbjct: 121 LMEV 124 >gi|24661488|ref|NP_648302.2| CG4447 [Drosophila melanogaster] gi|7294968|gb|AAF50297.1| CG4447 [Drosophila melanogaster] gi|201065901|gb|ACH92360.1| FI06490p [Drosophila melanogaster] Length = 254 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 41/185 (22%), Positives = 95/185 (51%), Gaps = 4/185 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 + ++++ + +M ++ +K+D + + R + +D ++++ G L ++A ++ Sbjct: 71 LREILNFDGLNSQMQKSVMQMKEDFVKHLSLRSTSGAIDTLRIKVDGQEHELQELAQISR 130 Query: 61 LEPRMLVVSV-WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 P+ ++V++ + + V + I +S + LNP +G L IP+P+ T+E R L K A Sbjct: 131 KNPKTIIVNMIGFPQTIPDVLKAIEKSGMNLNPQQDGTTLFIPIPKVTKEHRENLSKNAK 190 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 A K + ++R ++ +H++K +K + +D + + + I D I D K Sbjct: 191 ALFVKYRDAIRGVQ---NEHIRKLKKQPELGKDDAFAAQAQVTAIADRFISEADKLLASK 247 Query: 180 KKEIM 184 +KE++ Sbjct: 248 QKELL 252 >gi|72063711|ref|XP_792740.1| PREDICTED: similar to Mitochondrial ribosome recycling factor [Strongylocentrotus purpuratus] gi|115959633|ref|XP_001188854.1| PREDICTED: similar to Mitochondrial ribosome recycling factor [Strongylocentrotus purpuratus] Length = 188 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 56/184 (30%), Positives = 100/184 (54%), Gaps = 3/184 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 + ++DL ++K+ M + I LKKD + T R S LD + V PLNQ+ +T Sbjct: 5 DDILDLNDVKENMQNAIDALKKDYTSTLTIRTSQGALDHLLVITPDGKFPLNQLGQMTSK 64 Query: 62 EPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + V++ + + + + I ++ + LNP +EG V+++P+P+ T+E R LVK A Sbjct: 65 SSSSITVNLTNFPQATEAAAKAIRDAGMNLNPKIEGSVIQVPIPKVTKEHRENLVKSAKG 124 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 +K+K+++R R + ++K K G S+D + LE I ++TD+ + D F K Sbjct: 125 MCDKAKVNIRGARSKYISLVRK-HKEG-TSKDTIFRLEQQIHQVTDTFNDSADKLFSLKT 182 Query: 181 KEIM 184 KE++ Sbjct: 183 KELL 186 >gi|47458890|ref|YP_015752.1| ribosome recycling factor [Mycoplasma mobile 163K] gi|60390256|sp|Q6KIN5|RRF_MYCMO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|47458218|gb|AAT27541.1| ribosome recycling factor [Mycoplasma mobile 163K] Length = 183 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 43/179 (24%), Positives = 89/179 (49%), Gaps = 3/179 (1%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 +K M + + + G+ +P ++ +K Y + + ++A ++V E + ++ Sbjct: 8 NKVKLEMEKAVQTYSNQIAKISAGKANPKLISGIKFIYYDEPMSIEEMAAISVPEAQQIL 67 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + +D + ++ +++ N + + EG +R+ P T ERR LVK E +K+ Sbjct: 68 IKPYDIKTTKNIIESLNKMNYDMQIVDEGAQVRLKFPALTTERRKELVKQLVKLNESAKV 127 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++R +R+D +K K + SED ++IQK+TD I I+ ++K+KE+M Sbjct: 128 AIRQVRQDENKLIK---KDEELSEDEQKKYLDEIQKLTDKYIFKIEELNKDKEKELMTI 183 >gi|66350822|emb|CAI95712.1| novel protein similar to mitochondrial ribosome recycling factor isoform 1 (LOC286423) [Homo sapiens] Length = 262 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 52/184 (28%), Positives = 92/184 (50%), Gaps = 3/184 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 +I+L+ + + M I K + SP LD + V + LNQ+ ++V Sbjct: 80 EDIINLEEVNEEMKSVIEARKDNFNKTLNIGTSPGSLDKIAVVTADGKLALNQIRQISVK 139 Query: 62 EPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 P++++V++ E + + I ES + LNP VEG ++R+P+P+ E R LVK+A Sbjct: 140 LPQLILVNMASFPEFTVAAIKAIRESGMNLNPEVEGTLIRVPIPQVIREHREMLVKLAKQ 199 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 K+ S+R + + M+ LKKS+ + SE + E I ++ D T+ + K Sbjct: 200 NTNKATYSLRKVCTNAMNKLKKSKDT--VSEGTIRLTEKQISQMADDTVAELYRHLAVKT 257 Query: 181 KEIM 184 KE++ Sbjct: 258 KELL 261 >gi|281337698|gb|EFB13282.1| hypothetical protein PANDA_004028 [Ailuropoda melanoleuca] Length = 238 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 53/161 (32%), Positives = 88/161 (54%), Gaps = 3/161 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 +I L+ + + M + LK + R SP LD + V + LNQ+ +++ Sbjct: 80 EDIISLEEVDEEMKSVMEALKDNFNKTVNIRTSPGSLDHITVVTADGKLALNQIGQISMK 139 Query: 62 EPRMLVVS-VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 P++++V+ V E A+ + I ES + LNP VEG ++R+P+P+ T E R LVK+A Sbjct: 140 SPQLILVNMVSFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPKVTREHREMLVKLAKQ 199 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDI 161 K+K S+R +R + M+ LKKS+ K SED + +E + Sbjct: 200 NTNKAKDSLRKVRTNAMNKLKKSK--DKVSEDTIRLIEKQV 238 >gi|196003386|ref|XP_002111560.1| hypothetical protein TRIADDRAFT_55709 [Trichoplax adhaerens] gi|190585459|gb|EDV25527.1| hypothetical protein TRIADDRAFT_55709 [Trichoplax adhaerens] Length = 247 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 55/184 (29%), Positives = 103/184 (55%), Gaps = 4/184 (2%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 + +I +K ++ + L ++ + R++P L+ + V+ VPL Q+ VT Sbjct: 65 DDMISFSEMKIKLEGIVDGLAREYSNILVSRITPENLNRISVQTNDGKVPLKQLGQVTST 124 Query: 62 EPRMLVVSVW-DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 P++L +S+ E+V + I + L LNPIV+G L++P+P+ T+E+R +VK A + Sbjct: 125 SPQLLHISLAAFPEVVNNAAIAIRNAGLNLNPIVDGPSLKVPIPKMTKEQREKIVKTAKS 184 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 +K+K+++R +R++ M+ LKK SED V ++ IQ +TD+ +DS F K Sbjct: 185 SCDKAKVNIRRVRQNYMNDLKKL---KGVSEDDVYDTKDKIQAMTDNYSNKLDSLFTTKS 241 Query: 181 KEIM 184 +++ Sbjct: 242 DDVL 245 >gi|91077948|ref|XP_966879.1| PREDICTED: similar to mitochondrial ribosome recycling factor [Tribolium castaneum] gi|270002287|gb|EEZ98734.1| hypothetical protein TcasGA2_TC001287 [Tribolium castaneum] Length = 262 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 48/184 (26%), Positives = 95/184 (51%), Gaps = 4/184 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 ++++++++++K +M + LK+D + + R + ++ + VE G L ++A + Sbjct: 78 LSEIVNVESLKTQMQKAVDLLKEDYVKHLSVRTTTGSVESIPVELDGKTHSLQELAQIIR 137 Query: 61 LEPRMLVVSVW-DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 P+ LV+++ + + + + I +S + LNP +G L IP+P+ T E R L K A Sbjct: 138 KNPKTLVINMSVFPQAIPAALKAIEKSGMNLNPQQDGTTLFIPIPKVTTEHRENLAKSAK 197 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 K + +R+++ +K +K K SEDM + E I I D+ I + E K Sbjct: 198 TMFIKCRDGIRDVQ---NKQVKSLKKKDKVSEDMARNSEQQIVAIADAYIAEAEKILESK 254 Query: 180 KKEI 183 +KE+ Sbjct: 255 QKEL 258 >gi|206896074|ref|YP_002247089.1| ribosome recycling factor [Coprothermobacter proteolyticus DSM 5265] gi|254809505|sp|B5Y8J2|RRF_COPPD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|206738691|gb|ACI17769.1| ribosome recycling factor [Coprothermobacter proteolyticus DSM 5265] Length = 186 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 56/185 (30%), Positives = 108/185 (58%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M + + ++ TI+ + + T+R RVSP++L+ V VE G+ L+++A V Sbjct: 1 MKEHEITRQAREHFQKTINTMSDQLSTVRASRVSPAILEPVTVEYEGAKYKLSELAMVVA 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 + R L++ WD M+ ++ R + ++N+G NP +G+ +++ P ++ERR L ++ Sbjct: 61 QDARTLIIEPWDVSMIPAISRSLQKANVGANPSDDGKRIKLVFPSLSQERREELARLVDK 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 Y E+++I++RNIRR+ +D +K K + SED ++N++QK + K ++ + K+ Sbjct: 121 YLEEARIALRNIRREYIDEVKSKEKKKELSEDESRRIQNELQKAFEEYEKQMEQICQRKR 180 Query: 181 KEIMH 185 KEIM Sbjct: 181 KEIME 185 >gi|195129487|ref|XP_002009187.1| GI13908 [Drosophila mojavensis] gi|193920796|gb|EDW19663.1| GI13908 [Drosophila mojavensis] Length = 266 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 45/184 (24%), Positives = 97/184 (52%), Gaps = 4/184 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 + ++I+L ++ +M ++ +K+D + + R + +D ++++ G+ L ++A ++ Sbjct: 82 LRELINLDSLNAQMEKSVLQMKEDFIKNLSLRSTSGAIDTLRIKVDGAEHELQELAQISR 141 Query: 61 LEPRMLVVSV-WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 P+ ++V++ + + V R I +S + LNP +G L IP+P+ T+E R L K A Sbjct: 142 KNPKTIIVNMIAFPQTIPDVLRAIEKSGMNLNPQQDGTTLFIPIPKVTKEHRELLSKNAK 201 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 A K + ++R+I+ ++K +K ++D V + + + I D I D K Sbjct: 202 ALFIKYRDAIRDIQ---NAQIRKLKKQTDVAKDDVFAAQTQVTAIADKYIAEADKLLVSK 258 Query: 180 KKEI 183 +KE+ Sbjct: 259 QKEL 262 >gi|27904717|ref|NP_777843.1| ribosome recycling factor [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|44888331|sp|Q89AP1|RRF_BUCBP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|27904114|gb|AAO26948.1| ribosome recycling factor [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 183 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 56/174 (32%), Positives = 98/174 (56%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 +M + + TLR+ R SPS+LD + ++ G + L +++N+ V L ++++ Sbjct: 10 SKMDHCVHMFVNQLNTLRSSRASPSILDTILIDYLGQKIQLKKLSNIIVENVNTLRITLF 69 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 D ++ +VE+ I S L L PI +I +P TEERRL L+K+A AE S+I +RN Sbjct: 70 DPKIKNNVEKAIISSKLDLIPIFINNYFQIKIPVLTEERRLQLIKLAKKMAENSRICIRN 129 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 IRR + +K K S D L++++Q IT+S ++ I+ +K+K+++ Sbjct: 130 IRRLSNEKIKLFLKDKIISSDKERRLQHEVQDITNSYMEKINVILSKKEKDLLK 183 >gi|320165435|gb|EFW42334.1| predicted protein [Capsaspora owczarzaki ATCC 30864] Length = 413 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 63/177 (35%), Positives = 95/177 (53%), Gaps = 8/177 (4%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++ R+ T FL + LRTGR +P+MLD VKV PLN+ V+V + L Sbjct: 242 LDEVRTRLSTTAKFLTTALAKLRTGRATPAMLDSVKVRGR----PLNEHGMVSVKDASTL 297 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V+SV D+ ++ +ER I E++L +NP+ +G+ ++ +P+ T+E R L K+A E+ K Sbjct: 298 VISVNDETVLDDIERAIREADLNINPVRDGKFVKCVIPKMTQEFREKLTKMAREQGEEYK 357 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 I +R +R + KKS S V E D+ K D K ID+ K KEI Sbjct: 358 IRLRRVRAKAITDAKKS----GVSTSEVFRFEKDVGKAFDDQSKQIDTTVSAKIKEI 410 >gi|240047787|ref|YP_002961175.1| Ribosome recycling factor [Mycoplasma conjunctivae HRC/581] gi|239985359|emb|CAT05372.1| Ribosome recycling factor [Mycoplasma conjunctivae] Length = 186 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 54/170 (31%), Positives = 88/170 (51%), Gaps = 4/170 (2%) Query: 17 TISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMV 76 L K+ + GR +P ++ ++V+ YG+ P+N++AN++V L+V +D ++ Sbjct: 21 VFDHLDKNFNKINIGRANPQIISHIRVDYYGAPTPINEIANISVPSALQLLVKPYDISLI 80 Query: 77 ASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDG 136 S+ + + E +R+ PE T E+R LVK Y E++K+ +R IR+D Sbjct: 81 NSITSTLVAHKIEAQIQKEANQIRLVFPELTTEKRKELVKSIKKYEEEAKVKIRLIRQDV 140 Query: 137 MDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +KK SED + N IQK DS IK ID FEEK K +++ Sbjct: 141 NKLIKK----EDLSEDEEKNYLNQIQKTIDSKIKEIDKIFEEKSKLLLNI 186 >gi|195020953|ref|XP_001985300.1| GH14583 [Drosophila grimshawi] gi|193898782|gb|EDV97648.1| GH14583 [Drosophila grimshawi] Length = 262 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 45/185 (24%), Positives = 96/185 (51%), Gaps = 4/185 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 + ++I+L + +M ++ ++ D + + R + +D ++++ G+ L Q+A ++ Sbjct: 78 LRELINLDGLNAQMEKSVLQMRDDFIKNLSLRSTSGAIDTLRIKVDGAEHELQQLAQISR 137 Query: 61 LEPRMLVVSV-WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 P+ +V+++ + + V R I +S + LNP +G L IP+P+ T+E R L K A Sbjct: 138 KNPKTIVINMIAFPQTIPDVLRAIEKSGMNLNPQQDGTTLFIPIPKVTKEHREHLSKNAK 197 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 A K + ++R+I+ ++K +K ++D V + + + I D I D K Sbjct: 198 ALFIKHRDAIRDIQ---NAEIRKLKKQTDIAKDDVFAAQTQLTAIADKYIGEADKLLASK 254 Query: 180 KKEIM 184 +KE++ Sbjct: 255 QKELL 259 >gi|297832754|ref|XP_002884259.1| hypothetical protein ARALYDRAFT_317013 [Arabidopsis lyrata subsp. lyrata] gi|297330099|gb|EFH60518.1| hypothetical protein ARALYDRAFT_317013 [Arabidopsis lyrata subsp. lyrata] Length = 238 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 53/176 (30%), Positives = 85/176 (48%), Gaps = 26/176 (14%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 +M I L +D+ LRTGR +P MLD + VE G +PLN +A V+VL+P+ L V+ Sbjct: 88 ASSQMEAAIDALSRDLTKLRTGRAAPGMLDHIVVETGGVKMPLNHLALVSVLDPKTLSVN 147 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 +D + V +E+ I S LGLNP ++GQ L +P + Sbjct: 148 PYDPDTVKELEKAIVASPLGLNPKLDGQRLVASIPADIFFGQ------------------ 189 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 +D +KK+ +D V LE ++ ++T +K+ + + K+KEI Sbjct: 190 ------ALDTIKKA--GSSLPKDEVKRLEKEVDELTKKFVKSAEDMCKSKEKEITE 237 >gi|260810957|ref|XP_002600189.1| hypothetical protein BRAFLDRAFT_204166 [Branchiostoma floridae] gi|229285475|gb|EEN56201.1| hypothetical protein BRAFLDRAFT_204166 [Branchiostoma floridae] Length = 206 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 57/185 (30%), Positives = 97/185 (52%), Gaps = 3/185 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 ++V D++ ++ +M + LK++ + + R S LD + V+ PLN + + + Sbjct: 24 SEVTDIETVRGKMQKALDALKEEYVKNLSLRTSVGSLDSISVQTVNGRFPLNHLGQIVMK 83 Query: 62 EPRMLVVS-VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 P+M V+ V + + SV + I +S + LNPI EG V+++P+P+ T+E R L K A A Sbjct: 84 SPQMYHVNMVGAPQEIPSVLQAISQSGMNLNPIQEGNVIKVPIPKVTKEHRENLAKKAKA 143 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 K+K +R+IR M + SED V +E IQ++TD N + E K Sbjct: 144 GCNKTKEQIRDIRNQAMKE--AKKAKATVSEDTVRLVEKQIQQLTDDFNGNAEKILEAKS 201 Query: 181 KEIMH 185 KE++ Sbjct: 202 KELLK 206 >gi|58378683|ref|XP_308944.2| AGAP006804-PA [Anopheles gambiae str. PEST] gi|55246028|gb|EAA04181.2| AGAP006804-PA [Anopheles gambiae str. PEST] Length = 273 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 47/182 (25%), Positives = 86/182 (47%), Gaps = 4/182 (2%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +IDL ++ +M +++ +K D + + R + ++ +++ G L ++ V P Sbjct: 92 LIDLDGLRTQMEKSLAAMKDDYVKNLSLRSTTGSIETLRITYEGKDYQLQELGQVVRKNP 151 Query: 64 RMLVVS-VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 + LVV+ V + + V + I S + LNP +G L IPVP+ T E R L K A Sbjct: 152 KTLVVNLVAFPQTIPVVLQAIQRSGMNLNPQQDGTTLFIPVPKVTREHREGLAKNAKVLF 211 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 K + +++ + +KK +K SED + I I D +K + E K+ E Sbjct: 212 IKCRDRIKDAQ---NQSIKKLKKQSNVSEDEAFQAQAQITAIADGFVKEAEKLMELKQAE 268 Query: 183 IM 184 ++ Sbjct: 269 LL 270 >gi|169827156|ref|YP_001697314.1| ribosome recycling factor [Lysinibacillus sphaericus C3-41] gi|168991644|gb|ACA39184.1| Ribosome recycling factor (Ribosome-releasing factor) (RRF) [Lysinibacillus sphaericus C3-41] Length = 125 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 43/119 (36%), Positives = 79/119 (66%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ K++M TI+ +++ ++R GR + S+LD + V+ YG+ P+NQ+A V+V E R+L Sbjct: 6 LEQAKEKMNKTIAAFTRELSSIRAGRANASLLDRIMVDYYGAPTPINQLAGVSVPEARLL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 V++ +DK ++ +E+ I +S++G+ P +G ++R+ +P TEERR LVK +K+ Sbjct: 66 VITPYDKTILGEIEKAIMKSDIGITPTNDGSIIRLMIPALTEERRKDLVKQVQKRQQKT 124 >gi|148676726|gb|EDL08673.1| mCG22269 [Mus musculus] Length = 237 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 51/160 (31%), Positives = 87/160 (54%), Gaps = 3/160 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 +I L+ + + M + LK + R +P LD + V V LNQ+ +++ Sbjct: 80 EDIISLEEVDEDMKSVVEALKDNFNKTLNIRTAPGSLDHITVVTADGKVALNQIGQISMK 139 Query: 62 EPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 P++++V++ E A+ + I ES + LNP VEG ++R+P+P+ T E R LVK+A Sbjct: 140 SPQVILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPKVTREHREMLVKLAKQ 199 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLEND 160 K+K ++R +R + M+ LKKS+ K SED + +E Sbjct: 200 NTNKAKENLRKVRTNAMNKLKKSK--DKTSEDTIRLIEKQ 237 >gi|332832794|ref|XP_003312315.1| PREDICTED: ribosome-recycling factor, mitochondrial [Pan troglodytes] Length = 284 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 50/150 (33%), Positives = 86/150 (57%), Gaps = 3/150 (2%) Query: 36 SMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD-KEMVASVERGIHESNLGLNPIV 94 LD + V + LNQ++ +++ P++++V++ E A+ + I ES + LNP V Sbjct: 136 GSLDKIAVVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEV 195 Query: 95 EGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMV 154 EG ++R+P+P+ T E R LVK+A K+K S+R +R + M+ LKKS+ SED + Sbjct: 196 EGTLIRVPIPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKLKKSK--YTVSEDTI 253 Query: 155 ASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +E I ++ D T+ +D K KE++ Sbjct: 254 RLIEKQISQMADDTVAELDRHLAVKTKELL 283 >gi|163731915|ref|ZP_02139362.1| ribosome recycling factor [Roseobacter litoralis Och 149] gi|161395369|gb|EDQ19691.1| ribosome recycling factor [Roseobacter litoralis Och 149] Length = 121 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 59/122 (48%), Positives = 81/122 (66%), Gaps = 1/122 (0%) Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+ ++VWDK +V VE+ I ES LG+NP + G ++ +P+PE EERR L KVA YAE Sbjct: 1 MVTINVWDKGLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRRELSKVAGQYAEH 60 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +++S+RNIRRDGMD +KK++ G SED E ++Q+ITD IK ID K+ EIM Sbjct: 61 ARVSIRNIRRDGMDQIKKAKADG-MSEDDQKIWEGEVQEITDRYIKGIDEQLASKQSEIM 119 Query: 185 HF 186 Sbjct: 120 QV 121 >gi|17861680|gb|AAL39317.1| GH21184p [Drosophila melanogaster] Length = 254 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 94/185 (50%), Gaps = 4/185 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 + ++++ + +M ++ +K+D + + + +D ++++ G L ++A ++ Sbjct: 71 LREILNFDGLNSQMQKSVMQMKEDFVKHLSLPSTSGAIDTLRIKVDGQEHELQELAQISR 130 Query: 61 LEPRMLVVSV-WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 P+ ++V++ + + V + I +S + LNP +G L IP+P+ T+E R L K A Sbjct: 131 KNPKTIIVNMIGFPQTIPDVLKAIEKSGMNLNPQQDGTTLFIPIPKVTKEHRENLSKNAK 190 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 A K + ++R ++ +H++K +K + +D + + + I D I D K Sbjct: 191 ALFVKYRDAIRGVQ---NEHIRKLKKQPELGKDDAFAAQAQVTAIADRFISEADKLLASK 247 Query: 180 KKEIM 184 +KE++ Sbjct: 248 QKELL 252 >gi|301633271|gb|ADK86825.1| ribosome recycling factor [Mycoplasma pneumoniae FH] Length = 185 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 53/185 (28%), Positives = 101/185 (54%), Gaps = 4/185 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ L K+ +LK+++ +RTGR +P + D + VE+YG +P+ +A + V Sbjct: 2 MSPEKYLNFFKETADKKFQWLKEELSKIRTGRPNPKLFDNILVESYGDRMPMVALAQIAV 61 Query: 61 LEPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 PR +V+ +D K + ++ I +NLG+ P+++G +RI P T+E RL +K A Sbjct: 62 NPPREIVIKPFDVKNNINAIYSEIQRANLGVQPVIDGDKIRINFPPMTQESRLESIKQAK 121 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 E+ +R++RRD + +K K ED L+ +++K+ I +++ ++K Sbjct: 122 KVVEQIHQELRSVRRDTLQMIK---KDDHKDEDFEEFLKEEVEKVNKQYIAQLETIQKQK 178 Query: 180 KKEIM 184 +KE++ Sbjct: 179 EKELL 183 >gi|332229925|ref|XP_003264137.1| PREDICTED: ribosome-recycling factor, mitochondrial-like isoform 3 [Nomascus leucogenys] Length = 284 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 50/150 (33%), Positives = 87/150 (58%), Gaps = 3/150 (2%) Query: 36 SMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD-KEMVASVERGIHESNLGLNPIV 94 LD + V + LNQ++ +++ P++++V++ E A+ + I ES + LNP V Sbjct: 136 GSLDKIAVVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEV 195 Query: 95 EGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMV 154 EG ++R+P+P+ T E R LVK+A K+K S+R +R + M+ LKKS+ + SED + Sbjct: 196 EGTLIRVPIPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKLKKSKDT--VSEDTI 253 Query: 155 ASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +E I ++ D T+ +D K KE++ Sbjct: 254 RLIEKQISQMADDTVAELDRHLAVKTKELL 283 >gi|13508375|ref|NP_110325.1| ribosome releasing factor [Mycoplasma pneumoniae M129] gi|2500646|sp|P75161|RRF_MYCPN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|1673870|gb|AAB95854.1| ribosome releasing factor [Mycoplasma pneumoniae M129] Length = 184 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 53/185 (28%), Positives = 101/185 (54%), Gaps = 4/185 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ L K+ +LK+++ +RTGR +P + D + VE+YG +P+ +A + V Sbjct: 1 MSPEKYLNFFKETADKKFQWLKEELSKIRTGRPNPKLFDNLLVESYGDRMPMVALAQIAV 60 Query: 61 LEPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 PR +V+ +D K + ++ I +NLG+ P+++G +RI P T+E RL +K A Sbjct: 61 NPPREIVIKPFDVKNNINAIYSEIQRANLGVQPVIDGDKIRINFPPMTQESRLESIKQAK 120 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 E+ +R++RRD + +K K ED L+ +++K+ I +++ ++K Sbjct: 121 KVVEQIHQELRSVRRDTLQMIK---KDDHKDEDFEEFLKEEVEKVNKQYIAQLETIQKQK 177 Query: 180 KKEIM 184 +KE++ Sbjct: 178 EKELL 182 >gi|157121137|ref|XP_001659843.1| mitochondrial ribosome recycling factor [Aedes aegypti] gi|108874707|gb|EAT38932.1| mitochondrial ribosome recycling factor [Aedes aegypti] Length = 258 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 49/185 (26%), Positives = 96/185 (51%), Gaps = 4/185 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 + +VID+++++ M T+ +K+D + + R + ++ +KV G L ++A V Sbjct: 74 LAEVIDIESLRTHMEKTLETMKEDYIKNLSLRSATGAIETLKVSYEGKDYQLQELAQVVR 133 Query: 61 LEPRMLVVS-VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 P+ +VV+ V + + +V + I +S + LNP +G L IPVP+ T E R L K A Sbjct: 134 KNPKTVVVNLVSFPQTIPAVLQAIQKSGMNLNPQQDGTTLFIPVPKVTREHREGLAKNAK 193 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 K + ++++I+ +K+ +K SED+ ++ + I + IK + E K Sbjct: 194 TLFVKCRDAIKDIQ---NKTIKQVKKQANISEDLSFQVQTQVTAIANGYIKEAEKMLETK 250 Query: 180 KKEIM 184 + E++ Sbjct: 251 QAELL 255 >gi|149038905|gb|EDL93125.1| rCG45505 [Rattus norvegicus] Length = 239 Score = 154 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 51/161 (31%), Positives = 88/161 (54%), Gaps = 3/161 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 +I L+ + + M + LK + R +P LD + V + LNQ+ +++ Sbjct: 80 EDIISLEEVDEDMKSVMEALKDNFNKTLNIRTAPGSLDHITVVTADGKLALNQIGQISMK 139 Query: 62 EPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 P++++V++ E A+ + I ES + LNP VEG ++R+P+P+ T E R LVK+A Sbjct: 140 SPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPKVTREHREMLVKLAKQ 199 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDI 161 K+K ++R +R + M+ LKKS+ K SED + +E I Sbjct: 200 NTNKAKENLRKVRTNAMNKLKKSK--DKTSEDTIRLIEKQI 238 >gi|67925886|ref|ZP_00519172.1| Ribosome recycling factor [Crocosphaera watsonii WH 8501] gi|67852265|gb|EAM47738.1| Ribosome recycling factor [Crocosphaera watsonii WH 8501] Length = 122 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 49/122 (40%), Positives = 78/122 (63%) Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 M+++ +DK + +E+ I S++GL P +GQV+R+ +P TEERR LVK+A AE+ Sbjct: 1 MIMIQPYDKGSMGQIEKAIQMSDVGLTPNNDGQVIRLNIPSLTEERRKDLVKLASKMAEE 60 Query: 125 SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 K+++RNIRRD +D ++K K+ S+D L++DIQK+TD ID + K+ +IM Sbjct: 61 GKVAIRNIRRDAIDDVRKQEKNSDISKDESRDLQDDIQKVTDKFTNKIDDLLKSKETDIM 120 Query: 185 HF 186 Sbjct: 121 TV 122 >gi|304373376|ref|YP_003856585.1| Ribosome recycling factor [Mycoplasma hyorhinis HUB-1] gi|304309567|gb|ADM22047.1| Ribosome recycling factor [Mycoplasma hyorhinis HUB-1] Length = 186 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 48/190 (25%), Positives = 95/190 (50%), Gaps = 8/190 (4%) Query: 1 MNQVIDLQN----IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVA 56 M ++L++ I + L++++ + GR +P ++ +KVE Y S P+ ++A Sbjct: 1 METKLELKDFIEIINSKSNHIFQKLERNLSKINIGRANPQLVSFLKVEYYDSLTPIGEIA 60 Query: 57 NVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVK 116 ++V P+ L++ +D+ + + I L + EG +R+ +PE T ++R LVK Sbjct: 61 AISVPSPQQLLIKPYDQNVTKKIASTIVAHKLDVQIQNEGHQVRLILPELTTQKRQELVK 120 Query: 117 VAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFF 176 + E++K+ +R +R++ K K + SED + ++QK D I+ +D Sbjct: 121 SIKKFDEEAKVEIRQVRQEVN----KLVKKEEYSEDEERRILTELQKQIDKKIQEVDKVL 176 Query: 177 EEKKKEIMHF 186 EK +M F Sbjct: 177 SEKSANLMSF 186 >gi|328479954|gb|EGF49002.1| ribosome recycling factor [Lactobacillus rhamnosus MTCC 5462] Length = 129 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 46/116 (39%), Positives = 75/116 (64%), Gaps = 2/116 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 NQ+I + K MG T L++++ +R GR + S+L+ + V+ YG+ PLNQ+A +TV Sbjct: 3 NQII--EQAKVNMGKTEESLQRELGNIRAGRANASLLNQITVDYYGAPTPLNQMAAITVP 60 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKV 117 E R+L +S +DK + ++E I+ S+LG+NP +G V+R+ +P+ T ERR L K Sbjct: 61 EARVLQISPYDKSSLKNIETAINASDLGINPANDGDVIRLVIPQLTGERRKELPKK 116 >gi|269115236|ref|YP_003302999.1| ribosome recycling factor [Mycoplasma hominis] gi|268322861|emb|CAX37596.1| Ribosome recycling factor (Ribosome releasingfactor)(RRF) [Mycoplasma hominis ATCC 23114] Length = 183 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 48/180 (26%), Positives = 99/180 (55%), Gaps = 3/180 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + + + +I + +M + GR +P ++ +K+E YGS + + ++A++T P L Sbjct: 7 LLELDEEISKSIVNYENQLMKVVIGRANPVLISKIKLEYYGSPISVEEIASITTSGPLQL 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V +D ++ ++E+ I ++ + ++ I EG LR+ P+ T E+R+ + K + E+++ Sbjct: 67 IVKPYDMSVLKNIEKAIMDNKINVSIINEGHQLRLQYPQMTTEKRVEMTKQLASITEQAR 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I VR R+D +K SED+ ++IQK D +I+ I+ + K+KE++ Sbjct: 127 IGVRQARQDINKKIKA---DSDLSEDIQKHYLDNIQKEVDKSIEKINEMSKTKEKELLTI 183 >gi|332375891|gb|AEE63086.1| unknown [Dendroctonus ponderosae] Length = 268 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 46/185 (24%), Positives = 96/185 (51%), Gaps = 4/185 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 + +VI++ +++ M + ++ D + + R + ++ V V G+ + ++A + Sbjct: 84 LAEVINVGSLRSLMEKALLQMEDDFVKHLSLRSTTGAIESVPVNLDGNEHTMQELAQIVR 143 Query: 61 LEPRMLVVSVW-DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 P+ +V++ + + + + + +S + LNP +G L IPVP+ T+E R L K A Sbjct: 144 KNPKTIVMNFATFPQAIPAALKALSKSGMNLNPQQDGTTLFIPVPKVTKEHREQLAKNAK 203 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 K K SVR+++ + +K+ +K + SED+ S+E I I D I N ++ +K Sbjct: 204 QLFVKCKDSVRDVQ---LKFIKQLKKQDRISEDLARSVEQQIIAIADQFIANAEATLNKK 260 Query: 180 KKEIM 184 + E++ Sbjct: 261 QAELL 265 >gi|330723724|gb|AEC46094.1| Ribosome recycling factor [Mycoplasma hyorhinis MCLD] Length = 186 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 48/190 (25%), Positives = 95/190 (50%), Gaps = 8/190 (4%) Query: 1 MNQVIDLQN----IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVA 56 M ++L++ I + L++++ + GR +P ++ +KVE Y S P+ ++A Sbjct: 1 METKLELKDFIEIINSKSNHIFQKLERNLSKINIGRANPQLVSYLKVEYYDSLTPIGEIA 60 Query: 57 NVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVK 116 ++V P+ L++ +D+ + + I L + EG +R+ +PE T ++R LVK Sbjct: 61 AISVPSPQQLLIKPYDQNVTKKIASTIVAHKLDVQIQNEGHQVRLILPELTTQKRQELVK 120 Query: 117 VAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFF 176 + E++K+ +R +R++ K K + SED + ++QK D I+ +D Sbjct: 121 SIKKFDEEAKVEIRQVRQEVN----KLVKKEEYSEDEERRILIELQKQIDKKIQEVDKVL 176 Query: 177 EEKKKEIMHF 186 EK +M F Sbjct: 177 SEKSANLMSF 186 >gi|159490140|ref|XP_001703044.1| predicted protein [Chlamydomonas reinhardtii] gi|158270857|gb|EDO96689.1| predicted protein [Chlamydomonas reinhardtii] Length = 277 Score = 150 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 56/189 (29%), Positives = 93/189 (49%), Gaps = 15/189 (7%) Query: 3 QVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEA------YGSHVPLNQVA 56 Q D++ +MG+ + L++ + +RTGR SP +L+ V VEA +G HVPL + Sbjct: 96 QEWDIEPFVTQMGEALDHLRRKLAGIRTGRASPGLLEAVSVEARSSGSSHGPHVPLRVLG 155 Query: 57 NVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVK 116 V P++L V DK +V + I S L L E + +PVP + E VK Sbjct: 156 TVVARGPQLL---VDDK----AVAKAIQNSPLKLQARAENGEVLVPVPRLSLEMVKGFVK 208 Query: 117 VAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFF 176 +A AE ++ +VR +R ++ K G A E + +E +Q +TD I+ +D Sbjct: 209 LAAQEAEAARKAVRAVRHRALEQAKLCNTGGPAGE--LKRMEQQVQALTDKHIREVDGLL 266 Query: 177 EEKKKEIMH 185 K++++ Sbjct: 267 RAKERDLQE 275 >gi|170036921|ref|XP_001846309.1| ribosome recycling factor, mitochondrial [Culex quinquefasciatus] gi|167879937|gb|EDS43320.1| ribosome recycling factor, mitochondrial [Culex quinquefasciatus] Length = 259 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 45/185 (24%), Positives = 90/185 (48%), Gaps = 4/185 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 + +V D+ ++ M ++ +K D + + R + ++ +KV G L ++ + Sbjct: 74 LAEVFDVAALRTLMERNVATMKDDYIKNLSLRSATGAMETLKVTYEGKDYQLQELGQIVR 133 Query: 61 LEPRMLVVS-VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 P+ +VV+ V + + +V + I +S + LNP +G L +PVP+ T E R L K A Sbjct: 134 KNPKTVVVNLVSFPQTIPAVLQAIQKSGMNLNPQQDGTTLFVPVPKVTREHREGLAKNAK 193 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 K + ++++ + +KK +K SED+ ++ I I + IK + E K Sbjct: 194 TLFIKCRDAIKDAQ---NGQIKKLKKQTDISEDLNHQVQAQITAIANEYIKEAEKMMEIK 250 Query: 180 KKEIM 184 + E++ Sbjct: 251 QAELL 255 >gi|193216475|ref|YP_001999717.1| ribosome recycling factor [Mycoplasma arthritidis 158L3-1] gi|193001798|gb|ACF07013.1| ribosome recycling factor [Mycoplasma arthritidis 158L3-1] Length = 183 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 45/180 (25%), Positives = 98/180 (54%), Gaps = 3/180 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++ + I + + + GR +P++++ +K+ Y S + L+++A+++V P L Sbjct: 7 LMELQELVNKAILGYEAQLTKVVIGRANPNLINKIKINYYDSILSLDEIASISVASPLQL 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V +D + ++E+ I + L + EG +RI P+ T E+R +VK + E+++ Sbjct: 67 LVKPYDMSVTKTIEKAIMDYKLNVTIANEGHQIRITYPQMTTEKRGEMVKQLNLITEQAR 126 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ++VR R++ +K + + SED+ + IQ+ D +IK I +EK+K+++ Sbjct: 127 VTVRQARQEINKKIKA---NKELSEDLQKHYLDAIQEEIDKSIKKIQEIADEKEKDLLTI 183 >gi|194246630|ref|YP_002004269.1| ribosome recycling factor [Candidatus Phytoplasma mali] gi|193806987|emb|CAP18422.1| Ribosome recycling factor [Candidatus Phytoplasma mali] Length = 185 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 53/187 (28%), Positives = 109/187 (58%), Gaps = 7/187 (3%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 MN++ L N++++M + + K++ ++RT +P++LD + + YG ++ L Q+++++V Sbjct: 5 MNEI--LTNVENKMQKSSIEMLKELSSIRTDISNPNVLDKININYYGENISLKQLSSISV 62 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNP-IVEGQVLRIPVPETTEERRLALVKVAH 119 +E L + +D ++ +++ I S+LG+NP +V ++++ P TEERR +L+K Sbjct: 63 VEGNQLNIKPYDIKITDQIKKAILASDLGINPEVVNNSLIKLIFPPLTEERRKSLIKQVE 122 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 +E K+ +RNIRR+G + +K ++D+ Q +TD I+ I+ +K Sbjct: 123 KISENVKVVIRNIRREGNNKIKTMI----LTKDLELLFLKKNQILTDKYIELIEKQTNDK 178 Query: 180 KKEIMHF 186 KKE++ Sbjct: 179 KKELLKI 185 >gi|261749578|ref|YP_003257264.1| ribosome recycling factor [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497671|gb|ACX84121.1| ribosome recycling factor [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 184 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 58/187 (31%), Positives = 103/187 (55%), Gaps = 7/187 (3%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSP-SMLDLVKVEAYGSHVPLNQVANVT 59 +N++ + K M + L++++ +R G S +L+ +K++ Y S PL +VA +T Sbjct: 4 LNEIF--FSCKKDMEKILKKLQEEIHRIRLGSKSVVPLLEKIKIKCYASFFPLIEVATIT 61 Query: 60 VLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 +++ + + WD+ +++ +++ I + NLG P +G+ + I +P TEE R L+K Sbjct: 62 IVDNMNITIHPWDRAIISYIDKAIIDENLGFMPTNKGESIHIRLPILTEEGRKNLMKKIK 121 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 EK+KI VR R+ +K+ + SED+ EN IQKIT +I+ ID F K Sbjct: 122 TQTEKAKIFVRTTRKKYNQSIKRLK----ISEDLSKIGENRIQKITKVSIQKIDVLFFSK 177 Query: 180 KKEIMHF 186 +KEI+ Sbjct: 178 EKEILSI 184 >gi|219125246|ref|XP_002182896.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217405690|gb|EEC45632.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 314 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 56/182 (30%), Positives = 91/182 (50%), Gaps = 4/182 (2%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 D +K RM + + T+R + + D ++V+AYGSH PLN VA V + + Sbjct: 132 DPAQVKIRMTKVVDSFVTKLKTIRGSEPTADIFDDIQVDAYGSHAPLNSVAQVVISSSTL 191 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIV-EGQVLRIPVPETTEERRLALVKVAHAYAEK 124 + +D E+ +V I + L LNP V EG V+RIP+P + E R K + EK Sbjct: 192 AQATCYDPELAKNVGVAIRD-KLELNPSVEEGGVVRIPLPRVSLEVRQQTAKALTKHTEK 250 Query: 125 SKISVRNIRRDGMDHLKKSR--KSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 + VR IRR+ + +K+ K S+D + +I+ +T+ + ++ E+K K Sbjct: 251 YRQRVRTIRRNVLKVVKQGEAGKLEGISKDDAFRAQKEIEDVTEKIMVKLNEAAEQKHKA 310 Query: 183 IM 184 IM Sbjct: 311 IM 312 >gi|71894688|ref|YP_278796.1| ribosome releasing factor [Mycoplasma synoviae 53] gi|71851476|gb|AAZ44085.1| ribosome releasing factor [Mycoplasma synoviae 53] Length = 184 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 47/178 (26%), Positives = 90/178 (50%), Gaps = 4/178 (2%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L + + +I +M + TG+ +P ++ +KV Y + L+++A + V EP+ L Sbjct: 7 LDDFNKKTQKSIDHFVFEMSKISTGKANPQIVKKIKVMYYDNPTELDEIATIMVPEPQQL 66 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVE-GQVLRIPVPETTEERRLALVKVAHAYAEKS 125 ++ +D + + I +NLG P+ + G +RI P T +RR LVK + E++ Sbjct: 67 LIKPFDATSTKDIVKAILSANLGNFPMTDEGNQIRITFPPMTSDRRKELVKSLSKFIEQA 126 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 K+ VRN R++ + +K + SEDM + I+ I+ I + +EK+ ++ Sbjct: 127 KVGVRNARQEIIKAIK---SDAELSEDMQKNYVEKIELEVKKKIERISTLAKEKENDL 181 >gi|291000412|ref|XP_002682773.1| predicted protein [Naegleria gruberi] gi|284096401|gb|EFC50029.1| predicted protein [Naegleria gruberi] Length = 174 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 58/176 (32%), Positives = 99/176 (56%), Gaps = 5/176 (2%) Query: 13 RMGDTISFLKKDMMTLRTGR-VSPSMLDLVKVEA-YGSHVPLNQVANVTVLEPRMLVVSV 70 +M + +K + LR+G +PS+++ V + S PL +A++ V P+ L ++V Sbjct: 1 KMDKFVQSSQKQLSELRSGSGANPSLVENVMITMNDDSKRPLKSLASIVVKNPKCLTLNV 60 Query: 71 WDKEMVASVERGIHESNLGLNPIV-EGQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 +DK ++ + I +LGLNP + IP+P+ T+E R +VK A AE +K + Sbjct: 61 FDKTTTGAISKSIASEDLGLNPQQINENSIDIPIPKMTKEMRENVVKNAKKIAEGAKDKI 120 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 R++RR+GM +K + AS+D + E +QK+TD I ID+ ++K+KEIM Sbjct: 121 RDLRRNGMTKIKAQK--EGASKDDIFHDEQVLQKLTDDMITKIDNLVDQKEKEIMK 174 >gi|289811668|ref|ZP_06542297.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 96 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 41/96 (42%), Positives = 61/96 (63%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 + RM + K + +RTGR SPS+LD + VE YG+ PL Q+A+VTV + R L ++ Sbjct: 1 AEVRMEKCVEAFKTQISKVRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKIN 60 Query: 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPE 105 V+D+ M +VE+ I S+LGLNP G +R+P+P Sbjct: 61 VFDRSMGPAVEKAIMASDLGLNPSSAGTDIRVPLPP 96 >gi|311246344|ref|XP_003122165.1| PREDICTED: ribosome-recycling factor, mitochondrial-like isoform 2 [Sus scrofa] Length = 210 Score = 147 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 51/150 (34%), Positives = 87/150 (58%), Gaps = 3/150 (2%) Query: 36 SMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD-KEMVASVERGIHESNLGLNPIV 94 LD + V + LNQ+ +++ P++++V++ E A+ + I ES + LNP V Sbjct: 62 GSLDQITVVTADGKLALNQIGQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPDV 121 Query: 95 EGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMV 154 EG ++R+P+P+ T E R LVK+A K+K S+R +R + M+ LKKS+ KASED + Sbjct: 122 EGTLIRVPIPKVTREHREMLVKLAKQNTNKAKESLRKVRTNAMNKLKKSK--DKASEDTL 179 Query: 155 ASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +E I ++ D T+ ++ K KE++ Sbjct: 180 RLIEKQISQMADDTVAELERHLAVKTKELL 209 >gi|321466374|gb|EFX77370.1| hypothetical protein DAPPUDRAFT_305846 [Daphnia pulex] Length = 288 Score = 147 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 44/185 (23%), Positives = 94/185 (50%), Gaps = 3/185 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 + +++ + ++K + + LK D + + R + ++ +K++ G L ++A + Sbjct: 103 IAELVKVSSLKQDLQKGLDQLKSDYVKHLSLRSASGSIENLKIDYEGETYTLQEIAQIGK 162 Query: 61 LEPRMLVVSVW-DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 ++LVV++ ++ V + I++S +GLNP +G + IP+P+ T E R L K A Sbjct: 163 KGSQLLVVNLSGFPTLMRDVLKAINDSGMGLNPQQDGTKIFIPIPKVTREYRENLAKNAK 222 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 +K K R+I+ + +KK K + S D+ S++ IQ +T+ + + K Sbjct: 223 TMFQKFKDHSRDIQNRYIRDVKK--KEKEVSSDLSHSVQQQIQTMTEQYVVEGEKVMIAK 280 Query: 180 KKEIM 184 + E++ Sbjct: 281 QNELL 285 >gi|12045295|ref|NP_073106.1| ribosome recycling factor [Mycoplasma genitalium G37] gi|1350904|sp|P47673|RRF_MYCGE RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|3845028|gb|AAC72456.1| ribosome recycling factor [Mycoplasma genitalium G37] gi|166079045|gb|ABY79663.1| ribosome recycling factor [synthetic Mycoplasma genitalium JCVI-1.0] Length = 183 Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats. Identities = 51/187 (27%), Positives = 102/187 (54%), Gaps = 5/187 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M + + K I +LK+++ +RTGR +P + D + +E+YG +PL +A VT+ Sbjct: 1 MTKAHYIDFFKQAADKKIQWLKEELTKIRTGRPNPKIFDNLLIESYGQKMPLISLAQVTI 60 Query: 61 LEPRMLVVSVWDK-EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 PR +++ +D ++ I +N+G+ P+++G+ +R+ P+ T+E RL +K Sbjct: 61 NPPREIIIKPFDPKSNTNAIYSEIQRANIGVQPVIDGEKIRVNFPQITQETRLENIKHVK 120 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 E+ +R +RRD + +KK +ED+ SL+ +I+KI + ++ ++K Sbjct: 121 KIIEQIYQELRVVRRDALQMIKK----DNHNEDLENSLKAEIEKINKNYSNQLEEIQKDK 176 Query: 180 KKEIMHF 186 +KE++ Sbjct: 177 EKELLTI 183 >gi|219129866|ref|XP_002185100.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217403595|gb|EEC43547.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 314 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 55/182 (30%), Positives = 92/182 (50%), Gaps = 4/182 (2%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 D +K RM + + T+R + + D ++V+AYGSH PLN VA V + + Sbjct: 132 DPAQVKIRMTKVVDSFVTKLKTIRGSEPTADIFDDIQVDAYGSHAPLNSVAQVVISSSTL 191 Query: 66 LVVSVWDKEMVASVERGIHESNLGLNPIV-EGQVLRIPVPETTEERRLALVKVAHAYAEK 124 + +D E+ +V I + L LNP V EG V+RIP+P + E R K + EK Sbjct: 192 AQATCYDPELAKNVGVAIRD-KLELNPSVEEGGVVRIPLPRVSLEVRQQTAKALTKHTEK 250 Query: 125 SKISVRNIRRDGMDHLKKSR--KSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 + VR IRR+ + +K+ K S+D ++ +++ +T+ I ++ ++K K Sbjct: 251 YRQRVRTIRRNVLKVVKQGEAGKLEGISKDDAFRVQKEVEDVTEKIIVKLNEAADQKHKA 310 Query: 183 IM 184 IM Sbjct: 311 IM 312 >gi|315302965|ref|ZP_07873688.1| ribosome recycling factor [Listeria ivanovii FSL F6-596] gi|313628664|gb|EFR97074.1| ribosome recycling factor [Listeria ivanovii FSL F6-596] Length = 119 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 51/114 (44%), Positives = 77/114 (67%) Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 ++ +E+ I +S+LGL P +G VLR+ +P+ TEERR LVK AE++K++VRNI Sbjct: 6 PPILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAKVAVRNI 65 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 RR+ + LKK K+G +ED + S D+QK+TD +IKNIDS ++K+ EI+ Sbjct: 66 RREANEDLKKLEKNGDITEDDLRSYGEDVQKLTDESIKNIDSITKDKEAEILEV 119 >gi|119632274|gb|EAX11869.1| hCG1980694, isoform CRA_b [Homo sapiens] Length = 245 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 85/167 (50%), Gaps = 3/167 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 +I+L+ + + M I K + SP LD + V + LNQ+ ++V Sbjct: 80 EDIINLEEVNEEMKSVIEARKDNFNKTLNIGTSPGSLDKIAVVTADGKLALNQIRQISVK 139 Query: 62 EPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 P++++V++ E + + I ES + LNP VEG ++R+P+P+ E R LVK+A Sbjct: 140 LPQLILVNMASFPEFTVAAIKAIRESGMNLNPEVEGTLIRVPIPQVIREHREMLVKLAKQ 199 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDS 167 K+K S+R + + M+ LKKS+ + SE + E I ++ D Sbjct: 200 NTNKAKYSLRKVCTNAMNKLKKSKDT--VSEGTIRLTEKQISQMADD 244 >gi|295698561|ref|YP_003603216.1| ribosome recycling factor [Candidatus Riesia pediculicola USDA] gi|291157311|gb|ADD79756.1| ribosome recycling factor [Candidatus Riesia pediculicola USDA] Length = 185 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 57/178 (32%), Positives = 98/178 (55%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 +K M + +K + +R+ ++ P++L+ V V YGS PLN+++ ++ R L + Sbjct: 8 EVKKNMNQIVRSFEKRINKIRSEKIDPNILEKVSVFCYGSQTPLNRISLISSKNSRTLSI 67 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 +V+D+ ++ V+ I + L + V+++ P TEERR L+K+ AE KIS Sbjct: 68 TVFDRSLIKIVKEEILKLRLDCQIFLSENVIKLVFPLITEERRKNLIKIVQKMAETEKIS 127 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +R IR+ D +K KS K ED + +IQ TD+ IK ID +EK++ ++HF Sbjct: 128 IRKIRKVTKDKIKTLIKSKKIDEDNGRVIYMEIQDYTDTFIKKIDVILKEKERSLLHF 185 >gi|332229927|ref|XP_003264138.1| PREDICTED: ribosome-recycling factor, mitochondrial-like isoform 4 [Nomascus leucogenys] Length = 210 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 50/150 (33%), Positives = 87/150 (58%), Gaps = 3/150 (2%) Query: 36 SMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD-KEMVASVERGIHESNLGLNPIV 94 LD + V + LNQ++ +++ P++++V++ E A+ + I ES + LNP V Sbjct: 62 GSLDKIAVVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEV 121 Query: 95 EGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMV 154 EG ++R+P+P+ T E R LVK+A K+K S+R +R + M+ LKKS+ + SED + Sbjct: 122 EGTLIRVPIPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKLKKSKDT--VSEDTI 179 Query: 155 ASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +E I ++ D T+ +D K KE++ Sbjct: 180 RLIEKQISQMADDTVAELDRHLAVKTKELL 209 >gi|291042689|ref|NP_001166983.1| ribosome-recycling factor, mitochondrial isoform 3 precursor [Homo sapiens] gi|221043312|dbj|BAH13333.1| unnamed protein product [Homo sapiens] Length = 210 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 50/150 (33%), Positives = 87/150 (58%), Gaps = 3/150 (2%) Query: 36 SMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD-KEMVASVERGIHESNLGLNPIV 94 LD + V + LNQ++ +++ P++++V++ E A+ + I ES + LNP V Sbjct: 62 GSLDKIAVVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEV 121 Query: 95 EGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMV 154 EG ++R+P+P+ T E R LVK+A K+K S+R +R + M+ LKKS+ + SED + Sbjct: 122 EGTLIRVPIPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKLKKSKDT--VSEDTI 179 Query: 155 ASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +E I ++ D T+ +D K KE++ Sbjct: 180 RLIEKQISQMADDTVAELDRHLAVKTKELL 209 >gi|312371081|gb|EFR19345.1| hypothetical protein AND_22651 [Anopheles darlingi] Length = 273 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 48/185 (25%), Positives = 92/185 (49%), Gaps = 4/185 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 + +IDL ++ +M +++ +++D + + R + ++ +++ G L ++A V Sbjct: 90 LGSLIDLPGLRTQMEKSLAAMREDYIKNLSLRSTTGSIETLRISFEGKDYQLQELAQVVR 149 Query: 61 LEPRMLVVS-VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 P+ +VV+ V + + +V + I S + LNP +G L IPVP+ T E R L K A Sbjct: 150 KNPKTIVVNLVSFPQTIPAVLQAIQRSGMNLNPQQDGTTLFIPVPKVTREHREGLAKNAK 209 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 K + +++ + +KK +K ASED + I +I D IK + E K Sbjct: 210 VLFIKCRDRIKDAQ---NQSIKKLKKQSNASEDEAYQAQQQITQIADGFIKEAEKIMESK 266 Query: 180 KKEIM 184 + E++ Sbjct: 267 QAELL 271 >gi|223994925|ref|XP_002287146.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220976262|gb|EED94589.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 179 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 53/178 (29%), Positives = 92/178 (51%), Gaps = 6/178 (3%) Query: 14 MGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK 73 M I+ L++ ++R G + + D V+V AYG VPL+ V V + +P+ +S +D Sbjct: 1 MLTIIASLERSFSSIRGGEATAELFDAVRVSAYGETVPLSSVGQVVIEDPQRATISCYDP 60 Query: 74 EMVASVERGIHES-NLGLNPIVE---GQVLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 + V + + + LNP VE V+ +P+P +EE R +VK AE + V Sbjct: 61 SVSNDVRDAVRDMPGMNLNPYVEEGGSGVVIVPIPRVSEETRKEIVKELGRQAENGRQRV 120 Query: 130 RNIRRDGMDHLKKSR--KSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 R IRR+ MD +KK + K S+D + D++ +T+ + ++ E+K+K +M Sbjct: 121 RKIRREAMDVVKKGKDGKLEGISKDDAFRVGKDVEGVTEEVLAVLNDIVEKKQKSVME 178 >gi|217072808|gb|ACJ84764.1| unknown [Medicago truncatula] Length = 206 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 41/120 (34%), Positives = 67/120 (55%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + +M ++ L ++ LRTGR S MLD + VE G +PL+++A V+VL+P+ L Sbjct: 87 ASASSQMEAAMTALSVELSKLRTGRASAGMLDHIIVETGGVKMPLSRIALVSVLDPKTLS 146 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 V+ +D E + +E I S LGLNP +G+ L +P T+E A+ K+ E ++ Sbjct: 147 VNPYDPETLKQLENAIVSSPLGLNPRTDGERLIAVIPPLTKEHMQAMNKLVTKSCEDTRQ 206 >gi|302848442|ref|XP_002955753.1| hypothetical protein VOLCADRAFT_106930 [Volvox carteri f. nagariensis] gi|300258946|gb|EFJ43178.1| hypothetical protein VOLCADRAFT_106930 [Volvox carteri f. nagariensis] Length = 266 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 2/181 (1%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKV--EAYGSHVPLNQVANVTVLE 62 DL +M + +K++ +RTGR SP +L+ V V ++G HVP+ + V V Sbjct: 82 FDLAPFVSQMRSALEHYQKELAGIRTGRASPGLLEGVMVGESSHGKHVPVRALGTVVVRN 141 Query: 63 PRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 P +LVV V++ + + I S L L VEG + + VP T + +V++A A Sbjct: 142 PHLLVVEVYNPQDAQPLAEAIQSSPLKLQARVEGLEVLVEVPRLTMDMVERMVRLAGQEA 201 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 E ++ VR R +D K+ G S++ E +Q TD I +D+ K+ E Sbjct: 202 EAARAEVRRARHKALDLAKRVAAGGGVSKEETKRREVQVQVATDKHIAEVDALLRAKETE 261 Query: 183 I 183 + Sbjct: 262 L 262 >gi|322796292|gb|EFZ18864.1| hypothetical protein SINV_09513 [Solenopsis invicta] Length = 308 Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 45/185 (24%), Positives = 96/185 (51%), Gaps = 5/185 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 + QVID+ + ++ I LK + + R S ++++ V+ G L ++A ++ Sbjct: 124 LEQVIDVNKLTSQLDKAIEDLKNNFTQHLSIRSSMGAIEMLSVKFEGKDYTLQELAQISR 183 Query: 61 LEPRMLVVSVW-DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 P+++V++V + + + + + ++ + LNP +G + IPVP+ T+E R L K A Sbjct: 184 K-PKLVVLNVSTFPQAIPDILKSLMKNQMKLNPQQDGTTIYIPVPKVTKEHRETLSKNAK 242 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 ++ K +VR IR + +K+ K ++D+V +E+ I ++ + + E K Sbjct: 243 SFYVKCCDNVRQIRNKQIKAIKQKEK---LAKDLVFRIESYIDILSHQYVSKAEEILETK 299 Query: 180 KKEIM 184 +KE++ Sbjct: 300 QKELL 304 >gi|323507599|emb|CBQ67470.1| conserved hypothetical protein [Sporisorium reilianum] Length = 331 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 50/192 (26%), Positives = 85/192 (44%), Gaps = 10/192 (5%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTL--RTGRVSPSMLDLVKVE----AYGSHVPLNQV 55 ++ DL I M + + L GR PS+LD +KVE + PL + Sbjct: 139 DEAFDLDAIASHMSRAVERCRSTTSALVGSFGRADPSLLDNIKVEFASGTSKTLHPLREF 198 Query: 56 ANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIV---EGQVLRIPVPETTEERRL 112 A V V + ++ V+ +D +M+ +ER I+ S L L P + VLR+ VP+ T E R Sbjct: 199 ATVGVRDSALI-VTAFDADMLKHIERAIYTSQLNLTPQAQPGDDSVLRVAVPQPTTESRQ 257 Query: 113 ALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNI 172 A+VK E +++S+R+ R +K + ++ T + Sbjct: 258 AMVKDLTRICENARVSIRDARHKAQKQIKSDVDRKVVGKSEGDKESKKVEAETKKWTAQV 317 Query: 173 DSFFEEKKKEIM 184 D FE+ K+ ++ Sbjct: 318 DQLFEKMKQSLL 329 >gi|292558632|gb|ADE31633.1| Ribosome recycling factor [Streptococcus suis GZ1] Length = 120 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 50/120 (41%), Positives = 78/120 (65%) Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ +DK ++ +ER ++ S+LGL P +G V+R+ +P TEE R L K E SK Sbjct: 1 MITPFDKSILKDIERALNASDLGLTPQSDGTVIRLVIPALTEETRKNLAKDVKKVGENSK 60 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +++RNIRRD MD KK+ K+ + +ED + +LE DIQK+TD IK ID +K+KE++ Sbjct: 61 VAIRNIRRDAMDEAKKAEKAKEITEDELKTLEKDIQKVTDDAIKTIDKMTADKEKELLEV 120 >gi|156542086|ref|XP_001602891.1| PREDICTED: similar to GA18189-PA [Nasonia vitripennis] Length = 240 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 41/185 (22%), Positives = 95/185 (51%), Gaps = 5/185 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 + +++D+ ++ +M I +K D + T R + L+ + V+ + ++A + Sbjct: 56 LGELLDVDDLTSQMSQAIENMKADFIKNLTLRSTTGSLEQIPVKVDDKEYQIQELAQI-A 114 Query: 61 LEPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 +P++++++V + + + I +S L +NP EG L +P+P+ T+E R L K A Sbjct: 115 RKPKLIILNVSSFPTAIPHILKAIQKSGLNINPQQEGTTLYLPIPKVTKEHRENLSKNAK 174 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 A + + +++IR +K +K SED + +++ ++ ++D +K + E K Sbjct: 175 AIYIRYRDEIKDIRSKA---IKNLKKRKDVSEDSIRRVQSQVEALSDKYVKEAEIVLETK 231 Query: 180 KKEIM 184 + E++ Sbjct: 232 QNELL 236 >gi|307191744|gb|EFN75186.1| Ribosome-recycling factor, mitochondrial [Harpegnathos saltator] Length = 248 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 42/185 (22%), Positives = 90/185 (48%), Gaps = 5/185 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVT- 59 M +VID+ + ++ I LK + + + R S L+ + V L ++A ++ Sbjct: 64 MEEVIDVNKLTSQLDKAIEGLKNNFVKYLSIRSSVGALEELVVRFEDKDYTLQELAQISR 123 Query: 60 VLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 + +L +S + + + ++ + ++ + LNP +G + +P+P+ T+E R L K A Sbjct: 124 KPKLIVLNISTF-PQAIPNILNSLSKNQMNLNPQQDGTTVYVPIPKVTKEHRETLSKNAK 182 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 + K +VR+IR +K ++ ++D+V +E I ++ I + E K Sbjct: 183 GFYVKCCDNVRDIR---NKQIKSLKREESLAKDLVFKIEGYIDALSQQYISKAEQLLETK 239 Query: 180 KKEIM 184 +KE++ Sbjct: 240 QKELL 244 >gi|321309651|ref|YP_004191980.1| ribosome recycling factor [Mycoplasma haemofelis str. Langford 1] gi|319801495|emb|CBY92141.1| ribosome recycling factor [Mycoplasma haemofelis str. Langford 1] Length = 177 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 50/176 (28%), Positives = 88/176 (50%), Gaps = 4/176 (2%) Query: 11 KDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 + D + L +++ L T R+ P ++ + V AY + + LN++AN+ V R L + Sbjct: 6 ESEFKDILDRLNQNLKKLYTSRIHPDLVSGIPVSAYDTEMKLNELANINVPSARTLEIKP 65 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 +D ++A +E+ I ++ +PIV+ +RI + TEE R VK A EK+K+S+R Sbjct: 66 YDISLLAEIEKAIKKNKPEFSPIVQSDHIRISLLPPTEETRKRSVKEAKELLEKAKVSLR 125 Query: 131 NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 R+D +KK ED+ N++ +D+ F K+KE+M Sbjct: 126 VARKDFQTKIKK----DGHPEDLEKKYMNELDSKVKDMNAQLDNLFALKEKELMTI 177 >gi|209736400|gb|ACI69069.1| Ribosome recycling factor, mitochondrial precursor [Salmo salar] Length = 231 Score = 137 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 47/183 (25%), Positives = 85/183 (46%), Gaps = 35/183 (19%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 +I L+ +K+ M ++ LK D + R SP LD + V Sbjct: 83 EDIISLEEVKEDMAAVLTTLKDDFSRNLSIRTSPGALDHIVV------------------ 124 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 + R + ES++ LNP V+G ++R+ +P+ T E R L K+A + Sbjct: 125 ---------------GAATRSLRESSMKLNPEVDGTIIRVAIPKVTREHRENLAKLAKQF 169 Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 + K+K S+R +R + + +KK++ + SED + +E I ++ DS ++D K K Sbjct: 170 SNKAKESLRKVRSNAITQVKKAKDT--VSEDTIRLVEKQIGQMADSFAADVDKQLTTKTK 227 Query: 182 EIM 184 E++ Sbjct: 228 ELL 230 >gi|27365210|ref|NP_760738.1| ribosome recycling factor [Vibrio vulnificus CMCP6] gi|27361357|gb|AAO10265.1| Ribosome recycling factor [Vibrio vulnificus CMCP6] Length = 104 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 41/98 (41%), Positives = 64/98 (65%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ ++RM ++ LK + +RTGR PS+L + V+ YG+ PL QVANV + R L Sbjct: 7 KDAQERMEKSVEALKNSLSKVRTGRAHPSLLSGISVDYYGAATPLTQVANVIAEDARTLA 66 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPE 105 ++V+DKE+ VE+ I S+LGLNP+ G V+R+P+P Sbjct: 67 ITVFDKELTQKVEKAIMMSDLGLNPMSAGTVIRVPLPR 104 >gi|312876745|ref|ZP_07736724.1| ribosome recycling factor [Caldicellulosiruptor lactoaceticus 6A] gi|311796476|gb|EFR12826.1| ribosome recycling factor [Caldicellulosiruptor lactoaceticus 6A] Length = 108 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 44/108 (40%), Positives = 70/108 (64%) Query: 79 VERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMD 138 +++ +S+LG+NP +G+V+R+ PE TEERR LVK AE +K+++RNIRR+ +D Sbjct: 1 MKKPFKKSDLGVNPTNDGKVIRLIFPELTEERRKELVKQVKKMAEDAKVAIRNIRREALD 60 Query: 139 HLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 KK +K+ + +ED + E D+QK+ D I+ I+ K+KEIM Sbjct: 61 EYKKMKKNNEITEDDLKDAEEDVQKLHDKYIEQIEKLLSAKEKEIMEV 108 >gi|328723889|ref|XP_001942966.2| PREDICTED: ribosome-recycling factor, mitochondrial-like [Acyrthosiphon pisum] Length = 274 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 40/184 (21%), Positives = 86/184 (46%), Gaps = 4/184 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 + + +K M ++ LK + + + R S LD + V G + +A + Sbjct: 90 LAEHFKYYTMKTEMEKAVAALKNNYIKNLSLRSSTGALDSLPVTFEGDEYVIQDLAQIVR 149 Query: 61 LEPRMLVVSV-WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 P+ +++++ + + +V + S + LNP + + IP+P+ T+E R L K A Sbjct: 150 KNPKTIILNMTSFPQAIPAVLESLKASGMNLNPQQDKTSIFIPIPKVTKEHRENLSKGAK 209 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 A K+K S++ ++ ++K + + + D+V +L++ I + D + EEK Sbjct: 210 ALFIKTKDSIKELQ---NKNIKVLKDNDALATDLVHTLQDQITALADKYVLEAQRIMEEK 266 Query: 180 KKEI 183 + E+ Sbjct: 267 QSEL 270 >gi|309800201|ref|ZP_07694384.1| ribosome recycling factor [Streptococcus infantis SK1302] gi|308116172|gb|EFO53665.1| ribosome recycling factor [Streptococcus infantis SK1302] Length = 111 Score = 134 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 46/111 (41%), Positives = 69/111 (62%) Query: 76 VASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRD 135 + +ER ++ S+LG+ P +G V+R+ +P TEE R L K E +K+++RNIRRD Sbjct: 1 MKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAIRNIRRD 60 Query: 136 GMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 MD KK K+ + +ED + +LE DIQK TD +K+ID K+KEI+ Sbjct: 61 AMDEAKKQEKAKEITEDELKTLEKDIQKATDDAVKHIDEMTANKEKEILEV 111 >gi|118384524|ref|XP_001025410.1| ribosome recycling factor family protein [Tetrahymena thermophila] gi|89307177|gb|EAS05165.1| ribosome recycling factor family protein [Tetrahymena thermophila SB210] Length = 268 Score = 134 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 95/188 (50%), Gaps = 11/188 (5%) Query: 5 IDLQNIKDRMGDTISFLK--------KDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVA 56 IDL +++ M + K ++ L+TGR++P M + + V AYG PL ++ Sbjct: 80 IDLTPVEETMKAQLDHTKFIKYIINKAELAKLKTGRLTPDMFEKLSVVAYGEKTPLTELC 139 Query: 57 NVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPV-PETTEERRLALV 115 + + ++++D +V ++ + + S+L L EG+++ + T+E + A + Sbjct: 140 QIVSKAVTTVQLNIYDDALVGAIHKILENSDLNLQLKREGKIITCTMVGGNTKEIKDATI 199 Query: 116 KVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSF 175 K A + +K+K +R R+ G D +K +K SED + E ++ I + + +D+ Sbjct: 200 KAAKSVVDKAKNLLRKHRQTGQDMIKGYKKFE--SEDFIKEAEKEVDNIHNKFVAELDNL 257 Query: 176 FEEKKKEI 183 + K+KEI Sbjct: 258 LKIKEKEI 265 >gi|167520356|ref|XP_001744517.1| hypothetical protein [Monosiga brevicollis MX1] gi|163776848|gb|EDQ90466.1| predicted protein [Monosiga brevicollis MX1] Length = 253 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 47/173 (27%), Positives = 90/173 (52%), Gaps = 3/173 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L ++D+ + L + T+RTG V+P++LD VKV+ + L+Q V+V L Sbjct: 76 LDALQDKYHGQLQHLLNEYATIRTGEVTPNLLDGVKVKMGDATFALSQAGMVSVKNTDTL 135 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +V+ +D + + + ++N+ NP+ + V+RI +P+ T+E R +VK A E++K Sbjct: 136 IVTTFDSDTAKAAYEAVVDANIAPNPVRDDLVIRIQMPKLTKEYREQVVKRAKEMLEQTK 195 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 +R++R + LK + SED +++ + I + D +E+K Sbjct: 196 NKMRHLRSHAVSQLKGTE---GLSEDDTHAMQEYLDAINTHFVAQADEMYEKK 245 >gi|149019535|ref|ZP_01834854.1| ribosome recycling factor [Streptococcus pneumoniae SP23-BS72] gi|147930910|gb|EDK81890.1| ribosome recycling factor [Streptococcus pneumoniae SP23-BS72] Length = 111 Score = 133 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 46/111 (41%), Positives = 69/111 (62%) Query: 76 VASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRD 135 + +ER ++ S LG+ P +G V+R+ +P TEE R L K E +K++VRNIRRD Sbjct: 1 MKDIERALNASELGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAVRNIRRD 60 Query: 136 GMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 MD KK K+ + +ED + +LE DIQK+TD +K+ID K+KE++ Sbjct: 61 AMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELLEV 111 >gi|145510568|ref|XP_001441217.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124408456|emb|CAK73820.1| unnamed protein product [Paramecium tetraurelia] Length = 233 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 47/186 (25%), Positives = 99/186 (53%), Gaps = 3/186 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +++ ID + + + ++ + L+ G+++P MLD V ++AYG +PL+ +A + Sbjct: 49 LSKTIDFTSYQSKFDQYAQKFQEALKKLQVGKLTPEMLDRVSIQAYGEKLPLSSLAQASQ 108 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLN-PIVEGQVLRIPVPETTEERRLALVKVAH 119 +L+++V+D+ + V + + S+L L + Q++ T+E R+ V Sbjct: 109 KSQGVLILNVFDESTLMDVMKALENSDLNLQVKKQDKQIVCQLAQGNTKESRIMAVNNLK 168 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 E +K ++R IR + +D LK +K SED + E IQ + + +++DS ++ K Sbjct: 169 KLMEDAKQNLRQIRHECIDDLKPYKK--VTSEDTMRQAEKQIQDLFEKQTQSLDSLYKSK 226 Query: 180 KKEIMH 185 +KE+++ Sbjct: 227 EKELLN 232 >gi|307167406|gb|EFN60991.1| Ribosome-recycling factor, mitochondrial [Camponotus floridanus] Length = 212 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 94/185 (50%), Gaps = 5/185 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVT- 59 M +VID+ + ++ I +K D + R + ++ + V+ G L ++A ++ Sbjct: 28 MEEVIDVNKLTSQLERAIEIMKDDFAKYLSIRSTVGAIEELSVKFEGKDYTLQELAQISR 87 Query: 60 VLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 + +L +S + + + + + + ++ + LNP +G + +P+P+ T+E R +L K A Sbjct: 88 KPKLIVLNISTF-PQAIPDILKSLTKNQMNLNPQQDGTTVYVPIPKVTKEHRESLSKNAK 146 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 ++ K ++R+IR +K + ++D++ +EN I +++ + + E K Sbjct: 147 SFYTKCCSNIRDIR---NKQIKTVKNKEGLAKDIIFRMENYIDILSNQYVSKAEQLLETK 203 Query: 180 KKEIM 184 +KE++ Sbjct: 204 QKELL 208 >gi|16265934|gb|AAL16673.1|AF358685_1 ribosome releasing factor [Helicobacter hepaticus] Length = 96 Score = 130 bits (329), Expect = 7e-29, Method: Composition-based stats. Identities = 33/96 (34%), Positives = 63/96 (65%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 M +I L++D TLR+G+VS ++LD V+V+ YG+ PLNQV +V + ++++ W+ Sbjct: 1 HMDKSIESLRRDFSTLRSGKVSVNILDNVRVDYYGTPTPLNQVGSVIAQDATTIIITPWE 60 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTE 108 K ++ +E+ I E+N+G+NP + + +++ P T+ Sbjct: 61 KPLIKDIEKSIQEANIGVNPNSDSECVKLFFPPMTQ 96 >gi|156385498|ref|XP_001633667.1| predicted protein [Nematostella vectensis] gi|156220740|gb|EDO41604.1| predicted protein [Nematostella vectensis] Length = 191 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 55/182 (30%), Positives = 96/182 (52%), Gaps = 3/182 (1%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 ++D IK M TI LK+D + T ++ P LD ++V L ++A + + Sbjct: 10 LVDFSKIKANMESTIDKLKQDYTSKITVQILPDALDNIRVTTRSGKSTLAELAEIRMKGD 69 Query: 64 RMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 M V+ + + + + I ES + P+V+ + I +P+ T+E R LVK+A Sbjct: 70 NMFVIDMSSSPKDTKAAAQAIKESRINFEPVVDNTTITISIPKVTQEYRQDLVKLARQAC 129 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 E+SK ++R +R+ GM ++K+++ SED V +E IQ++TD + D EEK KE Sbjct: 130 EQSKQNLRRVRQKGMADVRKNKQGR--SEDEVKQVEKMIQQLTDEYSSDTDLLVEEKTKE 187 Query: 183 IM 184 ++ Sbjct: 188 LL 189 >gi|71003105|ref|XP_756233.1| hypothetical protein UM00086.1 [Ustilago maydis 521] gi|46096238|gb|EAK81471.1| hypothetical protein UM00086.1 [Ustilago maydis 521] Length = 183 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 52/182 (28%), Positives = 79/182 (43%), Gaps = 12/182 (6%) Query: 14 MGDTISFLKKDMMTL--RTGRVSPSMLDLVKVEAYGSH-----VPLNQVANVTVLEPRML 66 M + + TL GR PS+LD +KVE PL A V V + ++ Sbjct: 1 MSRAVERFRSTASTLVGSFGRADPSLLDSIKVEYPAGSSSKALHPLRDFATVGVRDGALI 60 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIV----EGQVLRIPVPETTEERRLALVKVAHAYA 122 V+ +D +MV +ER I+ SNL L P E VLR+ VP+ T E R ALVK Sbjct: 61 -VTAFDADMVKHIERAIYASNLNLTPQTQAGGEENVLRVAVPQPTTESRQALVKDLTKIC 119 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 E +++S+R+ R +K + ++ T +D FE+ K Sbjct: 120 ENARVSIRDARHKAQKQIKSDIDRKVVGKSEGDRESKKVEAETKKWSTQVDHLFEKIKAT 179 Query: 183 IM 184 ++ Sbjct: 180 LL 181 >gi|255660062|ref|ZP_05405471.1| ribosome recycling factor [Mycoplasma genitalium G37] Length = 161 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 47/164 (28%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M + + K I +LK+++ +RTGR +P + D + +E+YG +PL +A VT+ Sbjct: 1 MTKAHYIDFFKQAADKKIQWLKEELTKIRTGRPNPKIFDNLLIESYGQKMPLISLAQVTI 60 Query: 61 LEPRMLVVSVWDK-EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 PR +++ +D ++ I +N+G+ P+++G+ +R+ P+ T+E RL +K Sbjct: 61 NPPREIIIKPFDPKSNTNAIYSEIQRANIGVQPVIDGEKIRVNFPQITQETRLENIKHVK 120 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQK 163 E+ +R +RRD + +KK +ED+ SL+ +I+K Sbjct: 121 KIIEQIYQELRVVRRDALQMIKK----DNHNEDLENSLKAEIRK 160 >gi|119195787|ref|XP_001248497.1| hypothetical protein CIMG_02268 [Coccidioides immitis RS] Length = 291 Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 51/195 (26%), Positives = 88/195 (45%), Gaps = 13/195 (6%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKVEAYGS--------HVPL 52 D ++ + + D +S LK+D+ LR G R++P +++ V+V S V L Sbjct: 94 EDPFDFSSLSNGIQDALSRLKEDVSKLRVGGRLNPELIENVRVTLKTSASSGKEKETVRL 153 Query: 53 NQVANVTVLEPRMLVVSVWDKEMVASVERGIHESN-LGLNPIVEGQ---VLRIPVPETTE 108 +++A V RM+ + V ++E + + + L LNP + L +P+P T Sbjct: 154 SELAQVIPKGGRMVTILVGEEEFIKPITSALQAVPSLSLNPQPDPHNKLQLNLPIPPPTR 213 Query: 109 ERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDST 168 E R VK A A EK+ SV+N R + LK D + ++K+ + Sbjct: 214 ESRDQAVKDAKAAMEKASASVKNARANMNKKLKALGNKKAVRPDDLRKALEQMEKLAEKG 273 Query: 169 IKNIDSFFEEKKKEI 183 K++ FE KK + Sbjct: 274 QKDVKDAFESAKKAL 288 >gi|303321624|ref|XP_003070806.1| ribosomal recycling factor, mitochondrial precursor, putative [Coccidioides posadasii C735 delta SOWgp] gi|240110503|gb|EER28661.1| ribosomal recycling factor, mitochondrial precursor, putative [Coccidioides posadasii C735 delta SOWgp] gi|320040287|gb|EFW22220.1| ribosome recycling factor [Coccidioides posadasii str. Silveira] Length = 291 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 50/195 (25%), Positives = 88/195 (45%), Gaps = 13/195 (6%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKVEAYGS--------HVPL 52 D ++ + + D +S LK+D+ LR G R++P +++ V+V S V L Sbjct: 94 EDPFDFSSLSNGIQDALSRLKEDVSKLRVGGRLNPELIENVRVTLKTSAGSGKEKETVRL 153 Query: 53 NQVANVTVLEPRMLVVSVWDKEMVASVERGIHESN-LGLNPIVEGQ---VLRIPVPETTE 108 +++A V RM+ + V ++E + + + L LNP + L +P+P T Sbjct: 154 SELAQVIPKGGRMVTILVGEEEFIKPITSALQAVPSLSLNPQPDPHNKLQLNLPIPPPTR 213 Query: 109 ERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDST 168 E R VK A A E++ SV+N R + LK D + ++K+ + Sbjct: 214 ESRDQAVKDAKAAMERASASVKNARANMNKKLKALGNKKAVRPDDLRKALEQMEKLAEKG 273 Query: 169 IKNIDSFFEEKKKEI 183 K++ FE KK + Sbjct: 274 QKDVKDSFESAKKAL 288 >gi|331217075|ref|XP_003321216.1| hypothetical protein PGTG_02258 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309300206|gb|EFP76797.1| hypothetical protein PGTG_02258 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 267 Score = 124 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 43/186 (23%), Positives = 89/186 (47%), Gaps = 4/186 (2%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTL--RTGRVSPSMLDLVKVEAYGSHVPLNQVANVT 59 + + ++ M T++ L++++ + R GR++P+ LD +K+ + +N VA V Sbjct: 80 EERFNRNKVEKEMDMTVARLRQNVNLIVNRVGRLTPAYLDGIKLLHDHQRLGINSVAQVI 139 Query: 60 VLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQ-VLRIPVPETTEERRLALVKVA 118 V++ L V +D S+E+ ++ S L L P ++ L I +P T + R L K + Sbjct: 140 VVDSNTLSVVPYDPSYTKSIEQALYGSTLNLAPKLQPDGSLSIAIPRLTIDTRKVLAKES 199 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 E+++ +RNIR+ + S ++D + + ++ + K +D E Sbjct: 200 GELCEQARAGIRNIRQAAQKASRNDLDSNLITKDDFKDNQKSLDNVSKTYGKLVDGI-ES 258 Query: 179 KKKEIM 184 K K ++ Sbjct: 259 KSKAVL 264 >gi|328718680|ref|XP_001942916.2| PREDICTED: ribosome-recycling factor, mitochondrial-like [Acyrthosiphon pisum] Length = 176 Score = 124 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 40/175 (22%), Positives = 84/175 (48%), Gaps = 4/175 (2%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVS 69 +K M ++ LK + + + R S LD + V G + +A + P+ ++++ Sbjct: 1 MKTEMEKAVAALKNNYIKNLSLRSSTGALDSLPVTFEGDEYVIQDLAQIVRKNPKTIILN 60 Query: 70 V-WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 + + + +V + S + LNP + + IP+P+ T+E R L K A A K+K S Sbjct: 61 MTSFPQAIPAVLESLKASGMNLNPQQDKTSIFIPIPKVTKEHRENLSKGAKALFIKTKDS 120 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 ++ ++ ++K + + + D+V +L++ I + D + EEK+ E+ Sbjct: 121 IKELQ---NKNIKVLKDNDALATDLVHTLQDQITALADKYVLEAQRIMEEKQSEL 172 >gi|54020577|ref|YP_116060.1| ribosome recycling factor [Mycoplasma hyopneumoniae 232] gi|53987750|gb|AAV27951.1| ribosome releasing factor [Mycoplasma hyopneumoniae 232] gi|144227682|gb|AAZ44621.2| ribosome recycling factor [Mycoplasma hyopneumoniae J] gi|144575504|gb|AAZ53900.2| ribosome recycling factor [Mycoplasma hyopneumoniae 7448] gi|312601486|gb|ADQ90741.1| Ribosome recycling factor [Mycoplasma hyopneumoniae 168] Length = 186 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 44/172 (25%), Positives = 83/172 (48%), Gaps = 4/172 (2%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 ++ D S+L+K + G +P ++ +KV Y P+N++A+++ P L+V + Sbjct: 16 EKAQDVFSYLEKSFQKVTIGAPNPQLISYIKVNFYDVLTPINEIASISAPLPLQLLVKPY 75 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 + + V + I + + E +R+ PE T ++R + E+ K+ +R Sbjct: 76 ETKYVKEIASAIVAAKIDAQVQKEANQVRLIFPEPTHQKRQEAIHKLKKIHEEGKVRMRL 135 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 IR+D +KK + SED+ +QK +S I+ ID F++K K I Sbjct: 136 IRQDINKLIKK----EEFSEDLEKDYLGQVQKNINSEIEKIDQLFDKKVKAI 183 >gi|71893886|ref|YP_279332.1| ribosome recycling factor [Mycoplasma hyopneumoniae J] gi|72080865|ref|YP_287923.1| ribosome recycling factor [Mycoplasma hyopneumoniae 7448] Length = 174 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 44/172 (25%), Positives = 83/172 (48%), Gaps = 4/172 (2%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 ++ D S+L+K + G +P ++ +KV Y P+N++A+++ P L+V + Sbjct: 4 EKAQDVFSYLEKSFQKVTIGAPNPQLISYIKVNFYDVLTPINEIASISAPLPLQLLVKPY 63 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 + + V + I + + E +R+ PE T ++R + E+ K+ +R Sbjct: 64 ETKYVKEIASAIVAAKIDAQVQKEANQVRLIFPEPTHQKRQEAIHKLKKIHEEGKVRMRL 123 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 IR+D +KK + SED+ +QK +S I+ ID F++K K I Sbjct: 124 IRQDINKLIKK----EEFSEDLEKDYLGQVQKNINSEIEKIDQLFDKKVKAI 171 >gi|289809014|ref|ZP_06539643.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 91 Score = 120 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 36/91 (39%), Positives = 57/91 (62%) Query: 96 GQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVA 155 G +R+P+P TEERR L K+ AE+++++VRN+RRD D +K K SED Sbjct: 1 GTDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKAISEDDDR 60 Query: 156 SLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 + ++QK+TD+ IK +D+ +K+ E+M F Sbjct: 61 RSQEEVQKMTDAAIKKVDAALADKEAELMQF 91 >gi|242798810|ref|XP_002483245.1| ribosome recycling factor, putative [Talaromyces stipitatus ATCC 10500] gi|218716590|gb|EED16011.1| ribosome recycling factor, putative [Talaromyces stipitatus ATCC 10500] Length = 289 Score = 120 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 48/186 (25%), Positives = 92/186 (49%), Gaps = 7/186 (3%) Query: 3 QVIDLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKVE-AYGS--HVPLNQVANV 58 + ++ + D ++ LK+D+ LR+G R +P +++ ++V GS V L++VA V Sbjct: 99 DPFNFSQLQTGISDALTRLKEDLQKLRSGGRFNPEVIEQLRVNLVKGSNETVRLSEVAQV 158 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQ---VLRIPVPETTEERRLALV 115 R + + V ++++V V I SNL L P + L +P+P T+E R + Sbjct: 159 VPKGGRAVTIIVGEEDLVKPVNSAIISSNLSLTPQPDAHNPLQLNVPIPPPTKESRDQAI 218 Query: 116 KVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSF 175 K A +K+ +VR+ R L+ +K +A D + + ++K+ + K++ Sbjct: 219 KAAKGAMDKAANAVRSARASVHKRLQDMQKKKEARPDDIRKAHDQMEKLVEKAQKDVKDT 278 Query: 176 FEEKKK 181 FE +K Sbjct: 279 FESARK 284 >gi|328850981|gb|EGG00140.1| hypothetical protein MELLADRAFT_39912 [Melampsora larici-populina 98AG31] Length = 177 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 48/175 (27%), Positives = 88/175 (50%), Gaps = 5/175 (2%) Query: 14 MGDTISFLKKDMMTL--RTGRVSPSMLDLVKVEAYGS-HVPLNQVANVTVLEPRMLVVSV 70 M +S L+ ++ ++ R GR++P+ LD +KVE G P+ +A V VL+P L V Sbjct: 1 MNSGVSKLRVEIKSIVNRVGRLTPAYLDGLKVEIEGGIRSPIEGLAQVIVLDPTKLSVVA 60 Query: 71 WDKEMVASVERGIHESNLGLNPIVEGQ-VLRIPVPETTEERRLALVKVAHAYAEKSKISV 129 +D +E+ +++S+L L P ++ + + +P+ T E R L K A E+++ + Sbjct: 61 YDASHTKMIEQALYDSSLNLTPNLQPDGSIHLAIPKLTTESRQLLSKKAGQVCEQARSVI 120 Query: 130 RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 RN R+ +K ++D S + +IT + K +D E K K ++ Sbjct: 121 RNSRQLAQKASRKDLDGNLITKDDFKSNNKVLDEITKAHTKLVDEI-ENKSKRVL 174 >gi|190347462|gb|EDK39732.2| hypothetical protein PGUG_03830 [Meyerozyma guilliermondii ATCC 6260] Length = 255 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 46/189 (24%), Positives = 82/189 (43%), Gaps = 12/189 (6%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 ID + K +M + I K + GR SPS+ D + V+ P VA ++ R Sbjct: 71 IDFDDAKRKMNEVIEKFSKSANEAKLGRTSPSIFDHLSVDTEFGPQPFTSVAQTSIK-GR 129 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVE---GQVLRIPVPETTEERRLALVKVAHAY 121 +++V+D S+ + SNL +NP V+ L++P+P T E + K Sbjct: 130 NFLITVFDTANSQSIINAVLGSNLNMNPQVDPSNKSALKVPLPPLTVESKKESAKQLKGV 189 Query: 122 AEK-----SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFF 176 EK K+++ +IR + ++K K S+D L D +K+ + + F Sbjct: 190 YEKFKNGSGKLTLASIRAEVRTK--FTKKKKKLSDDEEKML-KDFEKLHKEYVDKLSDSF 246 Query: 177 EEKKKEIMH 185 + + I+ Sbjct: 247 KSAESVILK 255 >gi|258575539|ref|XP_002541951.1| predicted protein [Uncinocarpus reesii 1704] gi|237902217|gb|EEP76618.1| predicted protein [Uncinocarpus reesii 1704] Length = 249 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 47/192 (24%), Positives = 85/192 (44%), Gaps = 10/192 (5%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLR-TGRVSPSMLDLVKVEAYGSHV-----PLNQV 55 +D ++ + + D +S LK+D+ LR GR++P +++ V+V LN++ Sbjct: 55 EDPLDFSSLTNGIQDAVSRLKEDISKLRPGGRLNPELIENVRVTVKSGSTGKESVKLNEL 114 Query: 56 ANVTVLEPRMLVVSVWDKEMVASVERGIHESN-LGLNPIVEGQ---VLRIPVPETTEERR 111 A V R + + + +++ V + L LNP + L +P+P T E R Sbjct: 115 AQVIPKGGRTITILLGEEDYAKPVTSALQAMPSLSLNPQQDPHNKLQLNVPIPPPTRESR 174 Query: 112 LALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKN 171 ++K A A EK+ +V+N R + K + D + ++KIT K Sbjct: 175 DQVLKEAKAAMEKASTTVKNARANLNKKFKAAGNKKVVRPDDLHKALEQMEKITAKGQKE 234 Query: 172 IDSFFEEKKKEI 183 + FE KK + Sbjct: 235 VKDAFEAAKKAL 246 >gi|255948524|ref|XP_002565029.1| Pc22g10210 [Penicillium chrysogenum Wisconsin 54-1255] gi|211592046|emb|CAP98309.1| Pc22g10210 [Penicillium chrysogenum Wisconsin 54-1255] Length = 269 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 49/188 (26%), Positives = 85/188 (45%), Gaps = 7/188 (3%) Query: 3 QVIDLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKVEAYGSH---VPLNQVANV 58 DL + + + ++ LK D+ LR G R + ++L+ ++V+ V L +A V Sbjct: 79 DPFDLSQLHNGISTAVARLKDDLSKLRAGGRFNTAVLESLRVQLSKDSKDSVKLGDLAQV 138 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQ---VLRIPVPETTEERRLALV 115 RM+ + +++ + + I SNL L P + L IP+P T+E R V Sbjct: 139 VPKGGRMVTLLAAEEDHLKPLTSAIVSSNLSLTPQPDPHNALQLNIPIPPPTKESRDKNV 198 Query: 116 KVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSF 175 + A EK+ VR+ R L+ +K A D V + ++K+T+ K + Sbjct: 199 QAAKQAFEKAAGVVRDSRGAMHKRLQDMQKKKLARPDDVRKAHDQMEKVTEQGQKEVKDA 258 Query: 176 FEEKKKEI 183 FE KK + Sbjct: 259 FEGAKKTL 266 >gi|238508549|ref|XP_002385466.1| Hsp70 chaperone (HscA), putative [Aspergillus flavus NRRL3357] gi|220688985|gb|EED45337.1| Hsp70 chaperone (HscA), putative [Aspergillus flavus NRRL3357] Length = 886 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 50/191 (26%), Positives = 87/191 (45%), Gaps = 8/191 (4%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKVE-AYGSH--VPLNQVAN 57 DL + D + + LK D+ LR G R++ + ++V+ + G V L ++A Sbjct: 695 EDPYDLAQLHDGIAAAVCRLKDDLSKLRVGGRLNTDAIASLRVQLSKGGKETVKLGELAQ 754 Query: 58 VTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQ---VLRIPVPETTEERRLAL 114 V RM+ + +++ + + + S+L L P + L IP+P T+E R Sbjct: 755 VVPKGGRMVTILATEEDHIKPITSAVVSSDLSLTPQPDAHNSLQLNIPIPPPTKESRDQT 814 Query: 115 VKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDS 174 V VA A EK+ +VR+ R L+ +K A D V + ++K+T+ + + Sbjct: 815 VSVAKAAMEKATAAVRDSRGSVHKRLQDMQKKKIARPDDVRKAQEQMEKVTEKGQREVRD 874 Query: 175 FFEEKKKEIMH 185 FE KK M Sbjct: 875 LFEAAKKA-ME 884 >gi|317157882|ref|XP_003190900.1| ribosome recycling factor [Aspergillus oryzae RIB40] Length = 272 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 50/191 (26%), Positives = 87/191 (45%), Gaps = 8/191 (4%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKVE-AYGSH--VPLNQVAN 57 DL + D + + LK D+ LR G R++ + ++V+ + G V L ++A Sbjct: 81 EDPYDLAQLHDGIAAAVCRLKDDLSKLRVGGRLNTDAIASLRVQLSKGGKETVKLGELAQ 140 Query: 58 VTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQ---VLRIPVPETTEERRLAL 114 V RM+ + +++ + + + S+L L P + L IP+P T+E R Sbjct: 141 VVPKGGRMVTILATEEDHIKPITSAVVSSDLSLTPQPDAHNSLQLNIPIPPPTKESRDQT 200 Query: 115 VKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDS 174 V VA A EK+ +VR+ R L+ +K A D V + ++K+T+ + + Sbjct: 201 VSVAKAAMEKATAAVRDSRGSVHKRLQDMQKKKIARPDDVRKAQEQMEKVTEKGQREVRD 260 Query: 175 FFEEKKKEIMH 185 FE KK M Sbjct: 261 LFEAAKKA-ME 270 >gi|242022121|ref|XP_002431490.1| ribosome recycling factor, putative [Pediculus humanus corporis] gi|212516778|gb|EEB18752.1| ribosome recycling factor, putative [Pediculus humanus corporis] Length = 248 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 45/185 (24%), Positives = 84/185 (45%), Gaps = 4/185 (2%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N+ ++ + + D + I K D++ + R S ++ K+ G+ + +A + Sbjct: 62 LNEYLNFEKLIDDINRPIESFKDDLIQQVSLRSSIGAIENTKIVYDGNPYTIQDLAEINK 121 Query: 61 LEPRMLVVSVW-DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 P+M V+ + + +V + ES+L LN EG L +P+P+ T E R L K A Sbjct: 122 KNPKMFVLDFSCFPDAIGTVVKTFQESHLNLNVQQEGTKLIVPIPKVTREHRELLAKKAK 181 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 Y K K S+R ++ L K G SE + + + + D IK + + K Sbjct: 182 MYFVKCKDSIREVQMKYTKKLNNVEKLG--SE-VKFRITEQLVALGDKHIKIAEDMLKNK 238 Query: 180 KKEIM 184 + E++ Sbjct: 239 QNELL 243 >gi|156053600|ref|XP_001592726.1| predicted protein [Sclerotinia sclerotiorum 1980] gi|154703428|gb|EDO03167.1| predicted protein [Sclerotinia sclerotiorum 1980 UF-70] Length = 288 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 46/188 (24%), Positives = 79/188 (42%), Gaps = 8/188 (4%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKVEA---YGSHVPLNQVAN 57 N D ++ + ++ LK D+ LRTG R +P +L+ ++V+ L +A Sbjct: 96 NDPFDFSTLQTGIDKSLEKLKNDLGKLRTGGRFNPEVLEGLRVKLGKDAKESFRLGDLAQ 155 Query: 58 VTVLEPRMLVVSVWDKEMVASVERGIHESN-LGLNPIVEGQ---VLRIPVPETTEERRLA 113 V R +VV V +K+ + + I S L L P+ + Q L IP+P T+E R A Sbjct: 156 VLPKGGRSVVVLVGEKDHIKPILSTIQSSPTLSLQPVPDPQNPHALNIPIPPPTKESRDA 215 Query: 114 LVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNID 173 ++ A E + VRN R L+ D +++K+ + + Sbjct: 216 ALQAASKAGELASNGVRNARGAMQKKLRAMEVKKTVRPDDSKKAHKEMEKVVEKGNGEVK 275 Query: 174 SFFEEKKK 181 E +K Sbjct: 276 KLVEAARK 283 >gi|299783102|gb|ADJ41100.1| Ribosome recycling factor [Lactobacillus fermentum CECT 5716] Length = 97 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 40/96 (41%), Positives = 63/96 (65%) Query: 90 LNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKA 149 + P +G+ +R+ VP+ TE+RR LVK A EK+K++VRN+RR+ MD LKK K G Sbjct: 1 MTPQNDGETIRLVVPQLTEDRRKELVKDVKAEMEKAKVAVRNVRREAMDDLKKGNKDGDF 60 Query: 150 SEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 ++D LE +Q+ TD+ IKN++ +K+KE++ Sbjct: 61 NDDEFHDLEKQVQEETDAGIKNLEQIAADKEKELLE 96 >gi|332832792|ref|XP_001135581.2| PREDICTED: ribosome-recycling factor, mitochondrial isoform 1 [Pan troglodytes] Length = 275 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 60/108 (55%), Gaps = 1/108 (0%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 +I+L+ + + M I LK + R SP LD + V + LNQ++ +++ Sbjct: 154 EDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMK 213 Query: 62 EPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTE 108 P++++V++ E A+ + I ES + LNP VEG ++R+P+P++ + Sbjct: 214 SPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPQSAK 261 >gi|332229923|ref|XP_003264136.1| PREDICTED: ribosome-recycling factor, mitochondrial-like isoform 2 [Nomascus leucogenys] Length = 275 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 60/108 (55%), Gaps = 1/108 (0%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 +I+L+ + + M I LK + R SP LD + V + LNQ++ +++ Sbjct: 154 EDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMK 213 Query: 62 EPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTE 108 P++++V++ E A+ + I ES + LNP VEG ++R+P+P++ + Sbjct: 214 SPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPQSAK 261 >gi|146416959|ref|XP_001484449.1| hypothetical protein PGUG_03830 [Meyerozyma guilliermondii ATCC 6260] Length = 255 Score = 113 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 46/189 (24%), Positives = 82/189 (43%), Gaps = 12/189 (6%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 ID + K +M + I K + GR SP + D + V+ P VA ++ R Sbjct: 71 IDFDDAKRKMNEVIEKFSKLANEAKLGRTSPLIFDHLSVDTEFGPQPFTSVAQTSIK-GR 129 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQ---VLRIPVPETTEERRLALVKVAHAY 121 +++V+D S+ + SNL +NP V+ L++P+P T E + K Sbjct: 130 NFLITVFDTANSQSIINAVLGSNLNMNPQVDPSNKLALKVPLPPLTVESKKESAKQLKGV 189 Query: 122 AEK-----SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFF 176 EK K+++ +IR + K ++K K S+D L D +K+ + + F Sbjct: 190 YEKFKNGSGKLTLASIRAEV--RTKFTKKKKKLSDDEEKML-KDFEKLHKEYVDKLSDSF 246 Query: 177 EEKKKEIMH 185 + + I+ Sbjct: 247 KSAELVILK 255 >gi|327352864|gb|EGE81721.1| ribosome recycling factor [Ajellomyces dermatitidis ATCC 18188] Length = 304 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 50/193 (25%), Positives = 85/193 (44%), Gaps = 11/193 (5%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKV-----EAYGSH--VPLN 53 + +++ + + LK D+ LR G R +P ++ ++V + GS V L Sbjct: 110 DDPFGFSQLENDIAGAVQRLKDDISKLRAGGRFNPEAIETLRVAVSKGDGKGSKETVKLG 169 Query: 54 QVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQ---VLRIPVPETTEER 110 ++A V RML + V ++E + + + S+L LNP + L +P+P T+E Sbjct: 170 ELAQVIPKGGRMLTILVGEEEYIKPITSSLLSSSLSLNPQPDPHNSLQLNVPIPPPTKES 229 Query: 111 RLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIK 170 R VK A A +K+ +VRN R LK D + ++KI + K Sbjct: 230 RDQSVKDAKAAMDKASTAVRNARGAINKKLKNMGVKKLVRPDDLHKQVEKMEKIAEKGQK 289 Query: 171 NIDSFFEEKKKEI 183 + FE KK + Sbjct: 290 EVKDVFEAAKKAL 302 >gi|299749683|ref|XP_001836265.2| hypothetical protein CC1G_06350 [Coprinopsis cinerea okayama7#130] gi|298408550|gb|EAU85637.2| hypothetical protein CC1G_06350 [Coprinopsis cinerea okayama7#130] Length = 254 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 44/181 (24%), Positives = 88/181 (48%), Gaps = 16/181 (8%) Query: 8 QNIKDRMGDTISFLKKDMMTLRT---GRVSPSMLDLVKVEAYGSH--VPLNQVANVTVLE 62 + M + + + KK+ T GR++P++L V+V+ L ++A V V E Sbjct: 78 AKAETTMKNAVDWFKKECAGYETRASGRITPAILSPVRVKLGSDPKDYRLEELATVGVRE 137 Query: 63 PRMLVVSVWDKEMVASVERGIHESNL-GLNP-IVEGQVLRIPVPETTEERRLALVKVAHA 120 L+++++D+ + +E +H + G+ P + + +++P+P+ T E RL+L A Sbjct: 138 GSTLLITLFDEHNMKHIESALHTCGIPGVVPHRQDNRTIKVPIPKPTVESRLSLYAAAKK 197 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE+ ++ VR R LK+ + + E + QK+TD I +D ++ + Sbjct: 198 KAEEIRVQVR---RQHSTSLKRGKFEKHSIE------IEEFQKLTDRYIGEVDKILKDLQ 248 Query: 181 K 181 K Sbjct: 249 K 249 >gi|256370721|ref|YP_003108546.1| putative ribosome recycling factor [Candidatus Sulcia muelleri SMDSEM] gi|256009513|gb|ACU52873.1| putative ribosome recycling factor [Candidatus Sulcia muelleri SMDSEM] Length = 182 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 44/180 (24%), Positives = 99/180 (55%), Gaps = 3/180 (1%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + +K + + I K+ + +R G+++ S+LD V ++ YG V + ++N+++L+ R L Sbjct: 6 INGLKSEIKNKILGFKQKLFKIRIGKINESILDDVTIDLYGKKVQIKTISNISILDARTL 65 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 +++ W+++ + + + + ++++ P G+VL++ + + TEE R L+K + E K Sbjct: 66 LITPWEEKNINIIYKALLKNSILYTPYKTGKVLKLKMAQLTEETRKELIKKINFILEIFK 125 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 I++R +R+ +KK K +D + + +IQ + + I ++ KKKEI+ Sbjct: 126 INLRKLRK---KTIKKLNKINSLEKDCLKKNKIEIQNLINDCINSMKIISNRKKKEILTI 182 >gi|328779227|ref|XP_623856.3| PREDICTED: ribosome-recycling factor, mitochondrial-like [Apis mellifera] Length = 205 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 40/184 (21%), Positives = 81/184 (44%), Gaps = 3/184 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 + +I + ++ R TI K M+ R ++ + + L ++ + Sbjct: 23 IRDIIKVDHMISRFDGTIEKYKDQMIKNLPLRTRIGAIEQLTITFEDEEHKLEELVEINR 82 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 +++ ++V S+ + +S + LNP EG + IP+P+ T+E R L K+A Sbjct: 83 KPNMIILNVSAFPQIVPSILEALSKSQMNLNPQQEGTTIYIPIPKITKEHREVLTKMAKQ 142 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 Y K K + +IR + + LK A +D++ E+ I +K + + K+ Sbjct: 143 YFNKCKDIISDIRNEYVKELKNYE---NAPKDLIFKAEDYINVTQKEYVKKAEQLLKSKQ 199 Query: 181 KEIM 184 KE++ Sbjct: 200 KELL 203 >gi|50424817|ref|XP_460998.1| DEHA2F14630p [Debaryomyces hansenii CBS767] gi|60390377|sp|Q6BLC3|RRF1_DEBHA RecName: Full=Ribosome-recycling factor, mitochondrial; Short=RRF; AltName: Full=Ribosome-releasing factor, mitochondrial; Flags: Precursor gi|49656667|emb|CAG89364.1| DEHA2F14630p [Debaryomyces hansenii] Length = 257 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 46/191 (24%), Positives = 80/191 (41%), Gaps = 12/191 (6%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 ID + ++ I K + G+ SP++ D + VE V VA TV R Sbjct: 69 IDFDDATNKFKGVIERFSKQANEAKLGKTSPNIFDKLIVETANGEVGFTSVAQTTVK-GR 127 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVE---GQVLRIPVPETTEERRLALVKVAHAY 121 +++V+D V S+ + S+L +NP ++ Q L++P+P T E + K Sbjct: 128 NFMITVFDPSNVKSIINAVLGSDLNMNPQIDPSNKQTLKVPLPPLTTESKKENAKQLKLV 187 Query: 122 AEKSKI-------SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDS 174 E+ K S+ IR D + +K K K S D + D +K+ + Sbjct: 188 YERFKNGSGRANGSLATIRGDVKNKFQKQHKKKKLS-DAEEKVFKDFEKLHKQYTDKLTE 246 Query: 175 FFEEKKKEIMH 185 F+ ++ I+ Sbjct: 247 VFKSAEQAILK 257 >gi|225711692|gb|ACO11692.1| Ribosome recycling factor, mitochondrial precursor [Caligus rogercresseyi] Length = 260 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 43/183 (23%), Positives = 83/183 (45%), Gaps = 4/183 (2%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEP 63 +I L++ + + L T R S + LD + + G PL+++A ++ + Sbjct: 76 MIRLEDYWSELQGSYDDLMDHFANNLTMR-STNSLDKLPINFEGDVYPLHELAQISKKDA 134 Query: 64 RMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYA 122 + L++ +V+ V + I ESN+ L P +G L +P+P+ T E R L K A A Sbjct: 135 KRLIIDCSSFPGLVSPVSKAISESNMNLRPQADGDRLFVPIPKVTREYREQLSKGAKASF 194 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGK--ASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 K+K R I+ + + + S + +D +E I+ + + + + K+ Sbjct: 195 LKAKEGFRRIQNNYISAAQNVAMSPECRVPKDKQHMVEEIIRSVANDFAHRAEEILKTKQ 254 Query: 181 KEI 183 +EI Sbjct: 255 EEI 257 >gi|312876744|ref|ZP_07736723.1| ribosome recycling factor [Caldicellulosiruptor lactoaceticus 6A] gi|311796475|gb|EFR12825.1| ribosome recycling factor [Caldicellulosiruptor lactoaceticus 6A] Length = 84 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 50/80 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +Q +++M I LK++ T+R GR +P +LD V V+ YG P+ QVA++TV E RM+ Sbjct: 5 IQVAEEKMKKAIETLKEEFATVRAGRANPHILDKVMVDYYGVPTPIPQVASITVPEARMI 64 Query: 67 VVSVWDKEMVASVERGIHES 86 V+ W+ M+ +E+ I + Sbjct: 65 VIQPWEARMLKEIEKAIQKI 84 >gi|40317624|ref|NP_954646.1| ribosome-recycling factor, mitochondrial isoform 2 precursor [Homo sapiens] gi|56078380|gb|AAH53604.1| Mitochondrial ribosome recycling factor [Homo sapiens] gi|119607934|gb|EAW87528.1| mitochondrial ribosome recycling factor, isoform CRA_g [Homo sapiens] Length = 201 Score = 110 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 60/108 (55%), Gaps = 1/108 (0%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 +I+L+ + + M I LK + R SP LD + V + LNQ++ +++ Sbjct: 80 EDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMK 139 Query: 62 EPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTE 108 P++++V++ E A+ + I ES + LNP VEG ++R+P+P++ + Sbjct: 140 SPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPQSAK 187 >gi|326471947|gb|EGD95956.1| ribosome recycling factor [Trichophyton tonsurans CBS 112818] Length = 295 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 53/204 (25%), Positives = 90/204 (44%), Gaps = 23/204 (11%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKVEAYG------------- 47 D ++ D + D ++ LK+D+ LR+G RV+P ++ ++V + Sbjct: 91 EDPFDFSSLNDSIKDAVTRLKEDLAKLRSGGRVTPEAIENLRVSLHKPGGADVGKGKKGA 150 Query: 48 -----SHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQ---VL 99 V L +VA+V R + + V ++ V V I S+L LNP + L Sbjct: 151 SSSSKETVKLGEVASVIPKGGRSVSILVGEEHDVKPVMSAITSSDLSLNPQTDPHNPLQL 210 Query: 100 RIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLEN 159 +P+P T+E R V+ A EK+ VRN R ++ K ++ K D V + Sbjct: 211 NVPIPPPTKESREQTVRDAKVAMEKASNIVRNGRA-ALNKKLKGKELKKLRPDDVRKAVD 269 Query: 160 DIQKITDSTIKNIDSFFEEKKKEI 183 ++KI + K + FE KK + Sbjct: 270 QMEKIAEKGQKEVKDVFEAAKKAL 293 >gi|302506647|ref|XP_003015280.1| hypothetical protein ARB_06403 [Arthroderma benhamiae CBS 112371] gi|291178852|gb|EFE34640.1| hypothetical protein ARB_06403 [Arthroderma benhamiae CBS 112371] Length = 295 Score = 108 bits (271), Expect = 4e-22, Method: Composition-based stats. Identities = 54/204 (26%), Positives = 89/204 (43%), Gaps = 23/204 (11%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKVEAYG------------- 47 D ++ D + D ++ LK+D+ LR G RV+P ++ ++V + Sbjct: 91 EDPFDFSSLNDSIKDAVTRLKEDLAKLRGGGRVTPEAIENLRVSLHKPGGADVGKGKKGA 150 Query: 48 -----SHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQ---VL 99 V L +VA+V R + + V ++ V V I S+L LNP + L Sbjct: 151 SSSSKETVKLGEVASVIPKGGRSVSILVGEEHDVKPVMSAITSSDLSLNPQPDPHNPLQL 210 Query: 100 RIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLEN 159 +P+P T+E R VK A EK+ VRN R ++ K ++ K D V + Sbjct: 211 NVPIPPPTKESREQTVKDAKVAMEKASNIVRNGRA-ALNKKLKGKELKKLRPDDVRKAID 269 Query: 160 DIQKITDSTIKNIDSFFEEKKKEI 183 ++KI + K + FE KK + Sbjct: 270 QMEKIAEKGQKEVKDVFEAAKKAL 293 >gi|50305425|ref|XP_452672.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|60390379|sp|Q6CTR7|RRF1_KLULA RecName: Full=Ribosome-recycling factor, mitochondrial; Short=RRF; AltName: Full=Ribosome-releasing factor, mitochondrial; Flags: Precursor gi|49641805|emb|CAH01523.1| KLLA0C10593p [Kluyveromyces lactis] Length = 241 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 42/195 (21%), Positives = 86/195 (44%), Gaps = 18/195 (9%) Query: 3 QVIDLQ----NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 ++ID++ + + T+ K+ + + G SP++ + ++V G ++A Sbjct: 52 EIIDVKKYVIDATKQFEKTLELHKRKLAEQKVGTASPTIFNDLRVGKEGQK--FTELAAT 109 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPI---VEGQVLRIPVPETTEERRLALV 115 ++ L+V+V+D + ++ I + L LNP Q L++ +P T E R A+ Sbjct: 110 SLKGRNALIVTVFDPKDTKNIVSAIMAAGLNLNPERIPNNDQQLKVSLPPITTETRQAVC 169 Query: 116 KVAHAYAEKS-----KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIK 170 K E K S+ ++R + M LK +K D V + D++KI Sbjct: 170 KDLKKVFEDYKHSALKESLGHVRGEIMKELKHLQKKN----DDVKKVIQDVEKIHKEYTI 225 Query: 171 NIDSFFEEKKKEIMH 185 + ++ +K +M+ Sbjct: 226 KLQEQLKQAEKSVMN 240 >gi|302666357|ref|XP_003024779.1| hypothetical protein TRV_01061 [Trichophyton verrucosum HKI 0517] gi|291188849|gb|EFE44168.1| hypothetical protein TRV_01061 [Trichophyton verrucosum HKI 0517] Length = 295 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 54/204 (26%), Positives = 89/204 (43%), Gaps = 23/204 (11%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKVEAYG------------- 47 D ++ D + D ++ LK+D+ LR G RV+P ++ ++V + Sbjct: 91 EDPFDFSSLNDSIKDAVTRLKEDLAKLRGGGRVTPEAIENLRVSLHKPGGADVGKGKKGA 150 Query: 48 -----SHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQ---VL 99 V L +VA+V R + + V ++ V V I S+L LNP + L Sbjct: 151 SSSSKETVKLGEVASVIPKGGRSVSILVGEEHDVKPVMSAITSSDLSLNPQPDPHNPLQL 210 Query: 100 RIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLEN 159 +P+P T+E R VK A EK+ VRN R ++ K ++ K D V + Sbjct: 211 NVPIPPPTKESREQTVKDAKVAMEKASNIVRNGRA-ALNKKLKGKELKKLRPDDVRKAID 269 Query: 160 DIQKITDSTIKNIDSFFEEKKKEI 183 ++KI + K + FE KK + Sbjct: 270 QMEKIAEKGQKEVKDVFEAAKKAL 293 >gi|326477187|gb|EGE01197.1| ribosome recycling factor [Trichophyton equinum CBS 127.97] Length = 295 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 53/204 (25%), Positives = 90/204 (44%), Gaps = 23/204 (11%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKVEAYG------------- 47 D ++ D + D ++ LK+D+ LR+G RV+P ++ ++V + Sbjct: 91 EDPFDFSSLNDSIKDAVTRLKEDLAKLRSGGRVTPEAIENLRVSLHKPGGADVGKGKKGA 150 Query: 48 -----SHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQ---VL 99 V L +VA+V R + + V ++ V V I S+L LNP + L Sbjct: 151 SSSSKETVKLGEVASVIPKGGRSVSILVGEEHDVKPVMSAITSSDLSLNPQTDPHNPLQL 210 Query: 100 RIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLEN 159 +P+P T+E R V+ A EK+ VRN R ++ K ++ K D V + Sbjct: 211 NVPIPPPTKESREQTVRDAKVAMEKASNIVRNGRA-ALNKKLKGKELKKLRPDDVRKAVD 269 Query: 160 DIQKITDSTIKNIDSFFEEKKKEI 183 ++KI + K + FE KK + Sbjct: 270 QMEKIAEKGQKEVKDVFEAVKKAL 293 >gi|121719597|ref|XP_001276497.1| ribosome recycling factor, putative [Aspergillus clavatus NRRL 1] gi|119404709|gb|EAW15071.1| ribosome recycling factor, putative [Aspergillus clavatus NRRL 1] Length = 251 Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 45/189 (23%), Positives = 84/189 (44%), Gaps = 7/189 (3%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKV---EAYGSHVPLNQVAN 57 DL +++ + +S L+ D+ LR G R + L+ ++V + + L +A Sbjct: 60 EDPYDLSSLQAGISTVVSRLRDDLSKLRIGGRFNTESLENLRVCLSKGSKDTLRLGDLAQ 119 Query: 58 VTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQ---VLRIPVPETTEERRLAL 114 V R + + ++E + V I SNL L P + L I +P T+E R Sbjct: 120 VVPKGGRTVTILASEEEHIKPVTSAIVSSNLSLTPQPDAHNALQLNILIPPPTKELRDQT 179 Query: 115 VKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDS 174 V +A A +K+ ++R R L+ +K A D V ++ ++K+T+ K + Sbjct: 180 VAIAKAAMDKAAGAIRESRSVAHKRLQDMQKKKIARPDDVRKAQDQMEKLTERGQKEVKE 239 Query: 175 FFEEKKKEI 183 F+ +K + Sbjct: 240 LFDTTRKAL 248 >gi|170096781|ref|XP_001879610.1| predicted protein [Laccaria bicolor S238N-H82] gi|164645013|gb|EDR09261.1| predicted protein [Laccaria bicolor S238N-H82] Length = 227 Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 44/181 (24%), Positives = 86/181 (47%), Gaps = 16/181 (8%) Query: 8 QNIKDRMGDTISFLKKDMMT--LR-TGRVSPSMLDLVKVEAYGSH--VPLNQVANVTVLE 62 + M + +K+ + +R +GRV+P++L V+V+ + L ++A V V + Sbjct: 50 DKAETAMKTAAEWFRKECASSEVRASGRVTPALLSPVRVKLPSAEKEFKLEELATVGVRD 109 Query: 63 PRMLVVSVWDKEMVASVERGIHESNL-GLNP-IVEGQVLRIPVPETTEERRLALVKVAHA 120 L+++++D+ + VE +H + G+ P + + ++IP+P+ T + R AL A Sbjct: 110 GTTLLITLFDEHTIKHVESALHTCKIPGVVPHRYDDRTIKIPIPKPTVDARHALYAAAKR 169 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 AE+ ++ +R S K GK + V + QK+TD I +D + Sbjct: 170 KAEEMRVQIR-------KQHSLSVKRGKFEKHSVE--LEEFQKLTDRYIGEVDKVLANLQ 220 Query: 181 K 181 K Sbjct: 221 K 221 >gi|315046034|ref|XP_003172392.1| hypothetical protein MGYG_04984 [Arthroderma gypseum CBS 118893] gi|311342778|gb|EFR01981.1| hypothetical protein MGYG_04984 [Arthroderma gypseum CBS 118893] Length = 295 Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 55/204 (26%), Positives = 92/204 (45%), Gaps = 23/204 (11%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKVEAY---GSHV------- 50 D ++ D + D ++ LK+D+ LR G RV+P ++ ++V + G+ V Sbjct: 91 EDPFDFSSLHDSIKDAVTRLKEDLSKLRGGGRVTPEAIENLRVSLHKVGGAEVGKGKKGA 150 Query: 51 --------PLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQ---VL 99 L ++A+V R + + V ++ V V I S+L LNP + L Sbjct: 151 SSSSKDTARLGEIASVIPKGGRSVSILVGEEHDVKPVMSAITASDLSLNPQADPHNPLQL 210 Query: 100 RIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLEN 159 + +P T+E R VK A A EK+ VRN R ++ K + KA D V + Sbjct: 211 NVAIPPPTKESREQTVKDAKAAMEKASNIVRNGRA-ALNKKLKGKDLKKARPDDVRKAVD 269 Query: 160 DIQKITDSTIKNIDSFFEEKKKEI 183 ++KI + K++ FE KK + Sbjct: 270 QMEKIAEKGQKDVKDVFEAAKKAL 293 >gi|254573108|ref|XP_002493663.1| Mitochondrial ribosome recycling factor [Pichia pastoris GS115] gi|238033462|emb|CAY71484.1| Mitochondrial ribosome recycling factor [Pichia pastoris GS115] Length = 247 Score = 107 bits (269), Expect = 6e-22, Method: Composition-based stats. Identities = 50/186 (26%), Positives = 86/186 (46%), Gaps = 16/186 (8%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ I+DR T+ +K + ++ G+ +P + D +KV P VA T R L Sbjct: 69 LKEIEDRFKLTLQEHQKKINEIKLGKSNPKIFDSLKVSIAKDLQPFPSVAQTTSK-GRNL 127 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVE---GQVLRIPVPETTEERRLALVKVAHAYAE 123 +V+V+D +V V I S L LNP V+ Q+L++P+ T E + +K E Sbjct: 128 LVTVFDPSLVKYVVSSILSSGLNLNPEVDPKNPQLLKVPLTAPTAETKKETLKALKNNLE 187 Query: 124 KSKISVRN------IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFE 177 + S+ N IR + K ++ ED + L N+I+K+ +I F+ Sbjct: 188 HYRHSITNKHSLASIRAHYLKEFKGNK------EDSIKKLVNEIEKVHKDYSNSIHEQFK 241 Query: 178 EKKKEI 183 + +K + Sbjct: 242 KVEKTL 247 >gi|198419631|ref|XP_002119431.1| PREDICTED: similar to mitochondrial ribosome recycling factor [Ciona intestinalis] Length = 270 Score = 107 bits (269), Expect = 6e-22, Method: Composition-based stats. Identities = 40/187 (21%), Positives = 85/187 (45%), Gaps = 8/187 (4%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMT-LRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +V+DL +++ M + FL+ + G S+ + + + PLN++ ++ Sbjct: 87 EEVLDLLEVENEMKKCVLFLQDAYTKEFKVG-ADLSIFEQMTINIENDQYPLNEIGQISK 145 Query: 61 LEPRMLVVSV-WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 RM+VV + + + E I +SN+ LNP G ++++ +P+ T E R + K A Sbjct: 146 PTQRMIVVDMESFPQYIKEAEAVIRDSNMNLNPNTTGTLIKVAIPQVTAEYRQLVAKKAK 205 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGK-ASEDMVASLENDIQKITDSTIKNIDSFFEE 178 +RNI M+ K K+ + +E++ ++ + + ++ Sbjct: 206 ERLNLCNEKLRNI--KAMNE--KLAKNHEGLTENLEHGIKEQLSVYLEHYKTKAMEVYKA 261 Query: 179 KKKEIMH 185 K+KE++H Sbjct: 262 KEKELLH 268 >gi|225558281|gb|EEH06565.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR] Length = 302 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 49/187 (26%), Positives = 81/187 (43%), Gaps = 11/187 (5%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKV-----EAYGSH--VPLN 53 N +++ + + LK D+ LR G R +P ++ ++V + G+ V L Sbjct: 110 NDPFGFTQLENDIAVAVQRLKDDISKLRAGGRFNPEAIESLRVAVMKGDGKGTKETVKLG 169 Query: 54 QVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQ---VLRIPVPETTEER 110 ++A V RML + V D+ + + + SNL LNP + L +P+P T+E Sbjct: 170 ELAQVIPKAGRMLTILVGDQAYIKPITSALLSSNLSLNPQSDPHNSLQLNVPIPPPTKES 229 Query: 111 RLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIK 170 R VK A A +K+ +VRN R LK D + ++KI + K Sbjct: 230 RDQSVKDAKAAMDKASNAVRNARGAINKKLKNMGVKKLVRPDDLHKQIEKMEKIAEKGQK 289 Query: 171 NIDSFFE 177 + FE Sbjct: 290 EVKEVFE 296 >gi|325973353|ref|YP_004250417.1| ribosome recycling factor [Mycoplasma suis str. Illinois] gi|323651955|gb|ADX98037.1| ribosome recycling factor [Mycoplasma suis str. Illinois] Length = 195 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 44/180 (24%), Positives = 88/180 (48%), Gaps = 13/180 (7%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 D ++IK RM + + R++P+ ++VE G+ V L+++A V + + R+ Sbjct: 24 DFEHIKKRMNEKLEEFTIS-------RLNPTHFYSLQVEYEGNLVSLSEIALVNLEKARL 76 Query: 66 LVVSVWDKE--MVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAE 123 L + + + +E+ I ++ L ++ LR +PE T+E R +K E Sbjct: 77 LTIKPYLPSQKITHDIEKAIKKAKPNLTINIKDNELRCSIPEPTQEIREEKIKSGKQIVE 136 Query: 124 KSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 ++KI++RN R+D L+K K+ SE+ S + K + ++ + +K+KE+ Sbjct: 137 EAKIALRNKRKD----LQKYFKNSVQSENQKHSHREQLDKEISKYVLELEDNWAKKEKEL 192 >gi|61680523|pdb|1Y69|8 Chain 8, Rrf Domain I In Complex With The 50s Ribosomal Subunit From Deinococcus Radiodurans Length = 113 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 33/80 (41%), Positives = 52/80 (65%) Query: 107 TEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITD 166 TEERR L K+ AE+++++VRN+RRD D +K K + SED ++D+QK+TD Sbjct: 34 TEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQKLTD 93 Query: 167 STIKNIDSFFEEKKKEIMHF 186 + IK I++ +K+ E+M F Sbjct: 94 AAIKKIEAALADKEAELMQF 113 >gi|302678757|ref|XP_003029061.1| hypothetical protein SCHCODRAFT_59355 [Schizophyllum commune H4-8] gi|300102750|gb|EFI94158.1| hypothetical protein SCHCODRAFT_59355 [Schizophyllum commune H4-8] Length = 169 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 47/173 (27%), Positives = 87/173 (50%), Gaps = 14/173 (8%) Query: 14 MGDTISFLKKDMMTLR---TGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 M + + +KD + +GRV+P +L V+V+ G L +VA V V E L+V++ Sbjct: 1 MKAAVEWFRKDCASAEARASGRVTPQLLSPVRVKIEGGEYRLEEVATVGVREGSTLLVTL 60 Query: 71 WDKEMVASVERGIHESNL-GLNPI-VEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 +D+ + +VE ++ES L + P + + ++IP+P+ T E R L A AE +++ Sbjct: 61 FDESTMKAVESALYESKLPNIVPQRQDVRTIKIPIPKPTVEARQRLHTEAQRKAEDTRVQ 120 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 +R + +KK + + E + QK+ D +I+ +D + KK Sbjct: 121 LR---KQMQTSVKKGKFEKHSVE------LEEYQKLLDRSIEEVDKTLAQMKK 164 >gi|126140376|ref|XP_001386710.1| hypothetical protein PICST_63916 [Scheffersomyces stipitis CBS 6054] gi|126093994|gb|ABN68681.1| predicted protein [Scheffersomyces stipitis CBS 6054] Length = 221 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 43/190 (22%), Positives = 76/190 (40%), Gaps = 11/190 (5%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 ID ++ + I K + G+ +P + D + V + +P VA +V R Sbjct: 34 IDFEDATVKFQSVIEKFNKAASEAKLGKTNPKIFDKLSVNTHDGELPFTSVAQTSVK-GR 92 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQ---VLRIPVPETTEERRLALVKVAHAY 121 +++++D E V I S L +N V+ L++P+P T E + VK Sbjct: 93 NFIITLFDPENSKHVINTILGSGLNMNAQVDPSNKFTLKVPLPPVTTETKNESVKHLKEI 152 Query: 122 AEKSKI------SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSF 175 EK K S+ +IR + + K K K S D L +K+ ++ Sbjct: 153 FEKFKHGSAKNNSLSSIRSEVRNKFTKQLKGHK-STDAENKLLTQFEKLHKQYSDKLNES 211 Query: 176 FEEKKKEIMH 185 F+ + I+ Sbjct: 212 FKTAESSILK 221 >gi|325119994|emb|CBZ55547.1| putative ribosome recycling factor domain-containing protein [Neospora caninum Liverpool] Length = 380 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 41/186 (22%), Positives = 81/186 (43%), Gaps = 4/186 (2%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 + ++ + ++ M + + +D+ L R + + V A G L+ +A V V Sbjct: 195 SDAFNVASYEEEMKAALDKMVQDVSALLVHRERAEHFERIPVSAGGEKRRLSDLAQVVVR 254 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEG-QVLRIPVPETTEERRLALVKVAHA 120 + V V+ + ++ V + ++ EG +R+ +P+ T E R L A Sbjct: 255 GASTVHVHVFSEANLSKVMSALRAADPKWTLQQEGATAIRLQLPKVTPEMREELKTKARV 314 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLEND--IQKITDSTIKNIDSFFEE 178 + +K SVRN+R+ HL K + S D V E D + + ++ + D F E Sbjct: 315 FLVTAKSSVRNLRQAARSHLHKLQ-FKTRSIDDVKRRELDASLTSLMEAYVGKCDKVFNE 373 Query: 179 KKKEIM 184 K ++++ Sbjct: 374 KMQQLL 379 >gi|255718059|ref|XP_002555310.1| KLTH0G06270p [Lachancea thermotolerans] gi|238936694|emb|CAR24873.1| KLTH0G06270p [Lachancea thermotolerans] Length = 239 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 49/195 (25%), Positives = 81/195 (41%), Gaps = 18/195 (9%) Query: 2 NQVIDLQ----NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVAN 57 +V+D++ K + T+ KK + +R G SPS+ D + V S VA Sbjct: 50 TEVVDVKQYVLKAKTQFSVTLDLHKKKLSEIRAGSASPSIFDKLSVGKENSK--FTDVAT 107 Query: 58 VTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPI---VEGQVLRIPVPETTEERRLAL 114 ++ L+V+V+D + SV I + L LNP Q L+I +P T E R Sbjct: 108 TSMKGKNSLIVTVFDPKDTKSVVSSILAAGLNLNPEKIPNNDQQLKISLPPPTTETRKQT 167 Query: 115 VKVAHAYAEKS-----KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTI 169 K E+ K S+ +IR D + LK K D V + D+ K+ Sbjct: 168 CKQLKEVFEEFKNSANKNSLGHIRGDILKQLKNIDKKN----DSVKKVIQDLDKLHKEYT 223 Query: 170 KNIDSFFEEKKKEIM 184 + ++ +K ++ Sbjct: 224 NTLQEQLKQAEKNVL 238 >gi|327304937|ref|XP_003237160.1| ribosome recycling factor [Trichophyton rubrum CBS 118892] gi|326460158|gb|EGD85611.1| ribosome recycling factor [Trichophyton rubrum CBS 118892] Length = 295 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 54/204 (26%), Positives = 90/204 (44%), Gaps = 23/204 (11%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKVEAYG------------- 47 D ++ D + D +S LK+D+ LR G RV+P ++ ++V + Sbjct: 91 EDPFDFSSLNDSIKDAVSRLKEDLAKLRGGGRVTPEAIENLRVSLHKPGSVDVGKGKKGA 150 Query: 48 -----SHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQ---VL 99 V L +VA+V R + + V ++ V V I S+L LNP + L Sbjct: 151 SSSSKETVKLGEVASVIPKGGRSVSILVGEEHDVKHVMSAIISSDLSLNPQTDPHNLLQL 210 Query: 100 RIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLEN 159 +P+P T+E R VK A E++ VRN R ++ K ++ K D V + Sbjct: 211 NVPIPPPTKESREQTVKDAKIAMERASNIVRNGRA-ALNKKLKGKELKKLRPDDVRKAID 269 Query: 160 DIQKITDSTIKNIDSFFEEKKKEI 183 ++KI++ K + FE KK + Sbjct: 270 QMEKISEKGQKEVKDVFEAAKKAL 293 >gi|295659841|ref|XP_002790478.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01] gi|226281655|gb|EEH37221.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01] Length = 303 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 49/193 (25%), Positives = 84/193 (43%), Gaps = 11/193 (5%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKV-----EAYGSH--VPLN 53 + + + + + + LK D+ LR G R +P ++ ++V + GS V L Sbjct: 109 DDPYGFTQLDNDIAEAVRKLKDDISKLRAGGRFNPGTIESLRVAVTKGDGKGSKETVRLG 168 Query: 54 QVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQ---VLRIPVPETTEER 110 ++A V RML + V + E V + + S+L LNP + L +P+P T+E Sbjct: 169 ELAQVIPKGGRMLTLLVGEDEYVKPIASALLSSDLSLNPQRDAHNSLQLNVPIPPPTKES 228 Query: 111 RLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIK 170 R VK A A E++ +VRN R LK D + ++K+ + K Sbjct: 229 REQSVKDAKAAMERASNAVRNARGAINKKLKHMGVKKLVRPDDLHKQIEKMEKVAEKGQK 288 Query: 171 NIDSFFEEKKKEI 183 + FE +K + Sbjct: 289 EVKEVFEAARKAL 301 >gi|114690063|ref|XP_001138129.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes] Length = 209 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 30/108 (27%), Positives = 57/108 (52%), Gaps = 1/108 (0%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 +I+L+ + + M I K + R SP LD + V + LNQ+ ++V Sbjct: 80 EDIINLEEVNEEMKSVIEAHKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQIRQISVK 139 Query: 62 EPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTE 108 P++++V++ E + + I ES + LNP VEG ++R+P+P+ ++ Sbjct: 140 LPQLILVNMASFPECTVAAIKAIRESGMNLNPEVEGTLIRVPIPQISQ 187 >gi|325989788|ref|YP_004249487.1| ribosome-recycling factor [Mycoplasma suis KI3806] gi|323574873|emb|CBZ40533.1| Ribosome-recycling factor [Mycoplasma suis] Length = 195 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 44/180 (24%), Positives = 88/180 (48%), Gaps = 13/180 (7%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRM 65 D ++IK RM + + R++P+ ++VE G+ V L+++A V + + R+ Sbjct: 24 DFEHIKKRMNEKLEEFAIS-------RLNPTHFYSLQVEYEGNLVSLSEIALVNLEKARL 76 Query: 66 LVVSVWDKE--MVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAE 123 L + + + +E+ I ++ L ++ LR +PE T+E R +K E Sbjct: 77 LTIKPYLPSQKITHDIEKSIKKAKPNLTINIKDNELRCSIPEPTQEIREEKIKSGKQIVE 136 Query: 124 KSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 ++KI++RN R+D L+K K+ SE+ S + K + ++ + +K+KE+ Sbjct: 137 EAKIALRNKRKD----LQKYFKNSVQSENQKHSHREQLDKEISKYVLELEDNWSKKEKEL 192 >gi|242218533|ref|XP_002475056.1| predicted protein [Postia placenta Mad-698-R] gi|220725781|gb|EED79754.1| predicted protein [Postia placenta Mad-698-R] Length = 258 Score = 104 bits (261), Expect = 5e-21, Method: Composition-based stats. Identities = 46/179 (25%), Positives = 91/179 (50%), Gaps = 20/179 (11%) Query: 9 NIKDRMGDTISFLKKDMMTLR---TGRVSPSMLDLVKVEAYGSH------VPLNQVANVT 59 + +M + +K++ T+ +GRV+P++L V+V S V L +VA V Sbjct: 79 KAEGKMKAIVERFRKEVATMEMRASGRVTPAILSPVRVMLPDSEGGDAKGVRLEEVATVG 138 Query: 60 VLEPRMLVVSVWDKEMVASVERGIHESNL-GLNPI-VEGQVLRIPVPETTEERRLALVKV 117 V E L+V+V+++ + VE ++++ L G+ P V+ + ++IP+P+ T + R A++ Sbjct: 139 VREGTTLLVTVFEEHTLRHVETALYDAKLPGVVPQKVDARTIKIPMPKPTVDARQAMLAS 198 Query: 118 AHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFF 176 A AE S++ +R + LKK + + + E ++ Q +TD + +D Sbjct: 199 AQRQAEDSRVQIR---KQHQASLKKGKYAKHSPE------LDEFQSLTDKYLGEVDKVL 248 >gi|50287853|ref|XP_446356.1| hypothetical protein [Candida glabrata CBS 138] gi|60390409|sp|Q6FTT8|RRF1_CANGA RecName: Full=Ribosome-recycling factor, mitochondrial; Short=RRF; AltName: Full=Ribosome-releasing factor, mitochondrial; Flags: Precursor gi|49525663|emb|CAG59280.1| unnamed protein product [Candida glabrata] Length = 233 Score = 104 bits (260), Expect = 7e-21, Method: Composition-based stats. Identities = 44/191 (23%), Positives = 85/191 (44%), Gaps = 15/191 (7%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 N I + + + ++ K++ R G V+ ++ D + ++ G+ ++A+ T+ Sbjct: 48 NPSIYVDELVSKFDKSLELYSKELTDKRKGSVNANIFDNLSLK-NGAL--FKEMASTTLK 104 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPI---VEGQVLRIPVPETTEERRLALVKVA 118 L+V+V+D V ++ I S LNP Q L+IP+P T E R L K Sbjct: 105 GKGSLLVTVFDPNEVKNIVSAILASGQNLNPERVPTNNQQLKIPLPPPTAESRQNLCKEL 164 Query: 119 HAYAEKSKI-----SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNID 173 EK K S+ +IR + M LK +K + V + +++K+ + + Sbjct: 165 KTVFEKYKQSPSKNSLGHIRNEVMKKLKSLQKKDE----SVKKIIQNVEKVHKDYVTKLS 220 Query: 174 SFFEEKKKEIM 184 ++ +K +M Sbjct: 221 EQLKQAEKSVM 231 >gi|195167879|ref|XP_002024760.1| GL22438 [Drosophila persimilis] gi|194108165|gb|EDW30208.1| GL22438 [Drosophila persimilis] Length = 105 Score = 103 bits (259), Expect = 8e-21, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 3/104 (2%) Query: 81 RGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHL 140 R I +S + LNP +G L IP+P+ ++ R L K A A K + ++RN++ DH+ Sbjct: 2 RAIAKSGMNLNPQQDGTTLFIPIPKVSKVHRENLSKNAKALFVKYRDAIRNVQ---NDHI 58 Query: 141 KKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 +K +K +D + + + I D I D K+KE++ Sbjct: 59 RKLKKQPDVGQDDAFAAQTQVTAIGDKFIAEADKLLASKQKELL 102 >gi|145253418|ref|XP_001398222.1| ribosome recycling factor [Aspergillus niger CBS 513.88] gi|134083787|emb|CAK47121.1| unnamed protein product [Aspergillus niger] Length = 273 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 43/180 (23%), Positives = 80/180 (44%), Gaps = 7/180 (3%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKVEAYGSH---VPLNQVANVTVL 61 D + D + +S L+ ++ +R G R + ++ ++V+ S + L +A V Sbjct: 86 DFSQLHDGIAAALSRLRDELSKMRVGGRFNTVSIESLRVQLSKSSKQSIKLGDLAQVVPK 145 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQ---VLRIPVPETTEERRLALVKVA 118 RM+ + D++ V + I SNL L P + L + +P T+E R + +A Sbjct: 146 GGRMVTILASDEDHVKPIRSSIVSSNLSLTPQADPHNSLQLNVTIPPPTKESRDQTIAMA 205 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 A EK+ +VR+ R L+ +K A D V + ++K+ + K + FE Sbjct: 206 KAAMEKAAGAVRDSRSAVHKRLQDLQKKKIARPDDVRKAQEQMEKLAEKGQKEVKELFET 265 >gi|240277236|gb|EER40745.1| ribosome recycling factor [Ajellomyces capsulatus H143] gi|325094056|gb|EGC47366.1| ribosome recycling factor [Ajellomyces capsulatus H88] Length = 302 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 11/187 (5%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKV-----EAYGSH--VPLN 53 N +++ + + LK D+ LR G R + ++ ++V + G+ V L Sbjct: 110 NDPFGFTQLENDIAVAVQRLKDDISKLRAGGRFNLEAIESLRVAVMKGDGKGTKETVKLG 169 Query: 54 QVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQ---VLRIPVPETTEER 110 ++A V RML + V D+ + + + SNL LNP + L +P+P T+E Sbjct: 170 ELAQVIPKAGRMLTILVGDQAYIKPITSALLSSNLSLNPQSDPHNSLQLNVPIPPPTKES 229 Query: 111 RLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIK 170 R VK A A +K+ +VRN R LK D + ++KI + K Sbjct: 230 RDQSVKDAKAAMDKASNAVRNARGAINKKLKNMGVKKLVRPDDLHKQIEKMEKIAEKGQK 289 Query: 171 NIDSFFE 177 + FE Sbjct: 290 EVKEVFE 296 >gi|70983348|ref|XP_747201.1| ribosome recycling factor [Aspergillus fumigatus Af293] gi|66844827|gb|EAL85163.1| ribosome recycling factor, putative [Aspergillus fumigatus Af293] gi|159123795|gb|EDP48914.1| ribosome recycling factor, putative [Aspergillus fumigatus A1163] Length = 268 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 45/189 (23%), Positives = 85/189 (44%), Gaps = 7/189 (3%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKVEA-YGSH--VPLNQVAN 57 DL ++++ + ++ LK ++ LR G R + L+ ++V G V L ++A Sbjct: 77 EDPYDLSSLENGIVAAVARLKDELSKLRMGGRFNTESLEDLRVSLGKGGKEIVRLGELAQ 136 Query: 58 VTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVL---RIPVPETTEERRLAL 114 V R + + ++E V + I S+L L P + + I +P T+E R Sbjct: 137 VVPKGGRTVTILASEEEHVKPITSAILSSDLSLTPQPDPHNILQLNISIPPPTKELREQT 196 Query: 115 VKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDS 174 V A A EK+ +VR R L+ +K A D V ++ ++++T+ K + Sbjct: 197 VVAARAAMEKAAGAVRESRSVSHKRLQDMQKKKLARPDDVRKAQDHMERLTEKGQKEVKE 256 Query: 175 FFEEKKKEI 183 F+ K+ + Sbjct: 257 LFDAAKRAL 265 >gi|156844975|ref|XP_001645548.1| hypothetical protein Kpol_1004p67 [Vanderwaltozyma polyspora DSM 70294] gi|156116212|gb|EDO17690.1| hypothetical protein Kpol_1004p67 [Vanderwaltozyma polyspora DSM 70294] Length = 238 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 46/194 (23%), Positives = 89/194 (45%), Gaps = 19/194 (9%) Query: 3 QVIDLQ----NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANV 58 ++ID++ + +++ K + ++ GR +P + D +K+ S VA+ Sbjct: 51 EIIDVKGYIADATKLFDESLELHNKKLNEIKQGRANPKIFDGLKLHNGAS---FKDVAHT 107 Query: 59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPI---VEGQVLRIPVPETTEERRLALV 115 ++ L+++V+D + +V I + L LNP Q+L++ +P T E R+ LV Sbjct: 108 SLRGKNSLLITVYDPKDAKNVISAIMGAGLNLNPEKDPNNSQLLKVLLPPPTTESRMNLV 167 Query: 116 KVAHAYAEKSKIS-VRN----IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIK 170 K E K S +RN +R D + +KK K +D V D++K+ K Sbjct: 168 KELKIVFESFKSSSMRNSLASVRADILKEMKKLDKK----DDSVRKAMQDLEKLHKDYAK 223 Query: 171 NIDSFFEEKKKEIM 184 + ++ +K +M Sbjct: 224 KLQDQLKQAEKTLM 237 >gi|299143516|ref|ZP_07036596.1| ribosome recycling factor [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518001|gb|EFI41740.1| ribosome recycling factor [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 78 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 29/78 (37%), Positives = 51/78 (65%), Gaps = 3/78 (3%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 + K+R+ +I+ K ++R GR +PS+LD + V+ YG PLNQVA ++ EPR+L + Sbjct: 4 DCKERICKSITDRSK---SIRAGRANPSLLDKITVDYYGQATPLNQVAGISAPEPRLLAI 60 Query: 69 SVWDKEMVASVERGIHES 86 + WD ++ ++E+ I +S Sbjct: 61 TPWDASLIPAIEKAILKS 78 >gi|164661787|ref|XP_001732016.1| hypothetical protein MGL_1284 [Malassezia globosa CBS 7966] gi|159105917|gb|EDP44802.1| hypothetical protein MGL_1284 [Malassezia globosa CBS 7966] Length = 262 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 42/181 (23%), Positives = 82/181 (45%), Gaps = 8/181 (4%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTL--RTGRVSPSMLDLVKVEAYGS--HVPLNQVANVTV 60 +DL M ++ + + TL GRV ++LD V+V +PL+ A V V Sbjct: 76 LDLNGTSSEMESVVARCSEHVRTLVGSLGRVDAALLDDVRVSTGKGIKPIPLHNFATVGV 135 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIV---EGQVLRIPVPETTEERRLALVKV 117 + +LV++ ++ E + +E+ I+ L P + E V+ + VP+ T E R L++ Sbjct: 136 RD-NVLVITAYEPETLKHIEKAIYAVGKDLAPQIMHDEEGVMIVHVPKPTGETRKILLQK 194 Query: 118 AHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFE 177 + +K +RN+R+ H+K + S++ +++IT ++ Sbjct: 195 CIKECDHAKTMLRNVRQSAQKHMKHDSDNKILSKNEAQKESKKLEEITKKHTALLEQVAA 254 Query: 178 E 178 E Sbjct: 255 E 255 >gi|119484074|ref|XP_001261940.1| ribosome recycling factor, putative [Neosartorya fischeri NRRL 181] gi|119410096|gb|EAW20043.1| ribosome recycling factor, putative [Neosartorya fischeri NRRL 181] Length = 244 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 44/189 (23%), Positives = 84/189 (44%), Gaps = 7/189 (3%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKVEAYGS---HVPLNQVAN 57 DL ++++ + ++ LK ++ LR G R + L+ ++V V L ++A Sbjct: 53 EDPYDLSSLENGIVAAVARLKDELSKLRMGGRFNTESLEDLRVSLSKGGKETVRLGELAQ 112 Query: 58 VTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVL---RIPVPETTEERRLAL 114 V RM+ + ++E + + I S+L L P + + I +P T+E R Sbjct: 113 VVPKGGRMVTILASEEEHMKPITSAILSSDLSLTPQPDPHNILQLNISIPPPTKELREQT 172 Query: 115 VKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDS 174 V A A EK+ +VR R L+ +K A D V + ++++T+ K + Sbjct: 173 VVAARAAMEKAAGAVRESRSVSHKRLQDMQKKKLARPDDVRKAQEHMERLTEKGQKEVKE 232 Query: 175 FFEEKKKEI 183 F+ K+ + Sbjct: 233 LFDAAKRAL 241 >gi|296421645|ref|XP_002840375.1| hypothetical protein [Tuber melanosporum Mel28] gi|295636590|emb|CAZ84566.1| unnamed protein product [Tuber melanosporum] Length = 258 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 40/182 (21%), Positives = 83/182 (45%), Gaps = 11/182 (6%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKVEAY---GSHVPLNQVANVTVLE 62 ++++ + I L+ D+ LR G R P+ L+ ++V G+ L +A+V + + Sbjct: 76 FESLEAQCSAHIDKLRTDIAKLRAGGRNDPATLENIQVVLDRSTGASASLRDIAHV-LPK 134 Query: 63 PRMLVVSVWDKEMVASVERGIHESNLGLNPIVEG---QVLRIPVPETTEERRLALVKVAH 119 R VVSV+D V V I +++L + P+ + Q++ +P+P T+E R + ++ Sbjct: 135 GRSFVVSVYDAANVKYVIAAIQKADLNVQPMPDPKNTQLINVPLPPPTKETRSEIARMVG 194 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEK 179 E+ +R R+D +K +K D + + ++ + ++ Sbjct: 195 KAGERVMNYLRLARQDSHKLIKGLKKE---RPDDIRKADKQLELVMKKINAEAKKVIDDG 251 Query: 180 KK 181 KK Sbjct: 252 KK 253 >gi|58263076|ref|XP_568948.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21] gi|134107878|ref|XP_777321.1| hypothetical protein CNBB1230 [Cryptococcus neoformans var. neoformans B-3501A] gi|50260011|gb|EAL22674.1| hypothetical protein CNBB1230 [Cryptococcus neoformans var. neoformans B-3501A] gi|57223598|gb|AAW41641.1| expressed protein [Cryptococcus neoformans var. neoformans JEC21] Length = 252 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 54/184 (29%), Positives = 88/184 (47%), Gaps = 20/184 (10%) Query: 7 LQNIKDRMGDTISFLK----KDMMTLRTGRVSPSMLDLVKVEAYGSH--VPLNQVANVTV 60 + K +M ++ + K + + R GRVSP++LD V+V + + LN +A+VT Sbjct: 77 VSKAKAKMEKSVHWAKAVLFEGVERGR-GRVSPALLDSVRVSLPDTPGTLHLNALASVTT 135 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNL-GLNPIVE-GQVLRIPVPETTEERRLALVKVA 118 L V VWD + VE IH +NL G++P G L+IP+ T E+R +++ Sbjct: 136 K-GNALFVEVWDTASLKQVESAIHAANLPGISPQRMAGTTLKIPIARPTVEQRAEILRQL 194 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 E +K +R R DG L + +G +++QK+ D K++D Sbjct: 195 AETVEAAKTQIRVARTDGFKALGGRKANGT----------DEVQKVVDEMCKDLDGQLAL 244 Query: 179 KKKE 182 KKE Sbjct: 245 AKKE 248 >gi|259486711|tpe|CBF84788.1| TPA: ribosome recycling factor, putative (AFU_orthologue; AFUA_8G03940) [Aspergillus nidulans FGSC A4] Length = 255 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 51/187 (27%), Positives = 87/187 (46%), Gaps = 7/187 (3%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKVE-AYGSH--VPLNQVAN 57 + DL ++ + +S LK ++ LRTG R+ P ++ ++V+ + G+ L +A Sbjct: 64 DDPSDLSQLELGIATAVSRLKDELTKLRTGGRLCPETIESLRVQLSKGTKETARLGDLAQ 123 Query: 58 VTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQ---VLRIPVPETTEERRLAL 114 V RM+ V V ++ + + I SNL L P + L IP+P T+E R Sbjct: 124 VVPKGGRMVAVLVSEESYMKPISSAILASNLSLTPQQDPHNALQLNIPIPPPTKESRDQT 183 Query: 115 VKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDS 174 V A A E++ +VR R L++ K A D ++ ++K+T+ K + Sbjct: 184 VLAAKAAMERAASNVRETRGIVHKRLQEMIKKKIARPDDARKAQDKMEKLTEKGQKEVKD 243 Query: 175 FFEEKKK 181 FE KK Sbjct: 244 LFEVAKK 250 >gi|315302963|ref|ZP_07873687.1| ribosome-recycling factor [Listeria ivanovii FSL F6-596] gi|313628668|gb|EFR97077.1| ribosome-recycling factor [Listeria ivanovii FSL F6-596] Length = 77 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 45/72 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L K++M L + T+R GR + S+LD + V+ YG+ P+NQ+A+++V E RML Sbjct: 6 LSKSKEKMEKAEQALTRQFGTIRAGRANASLLDRLTVDYYGAPTPVNQMASISVPEARML 65 Query: 67 VVSVWDKEMVAS 78 +++ +DK ++ Sbjct: 66 LITPYDKTILGE 77 >gi|307069549|ref|YP_003878026.1| putative ribosome recycling factor [Candidatus Zinderia insecticola CARI] gi|306482809|gb|ADM89680.1| putative ribosome recycling factor [Candidatus Zinderia insecticola CARI] Length = 180 Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 93/165 (56%), Gaps = 4/165 (2%) Query: 21 LKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVE 80 K +++ ++ +++ ++L +K++ + LN+++N+ V++ + L + ++K ++ +++ Sbjct: 19 FKNNLIKIQGNKLNSNILYNIKIKYNNKKIYLNKISNIFVIDEKTLSIIPYEKNIINNIK 78 Query: 81 RGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHL 140 + ++ + N I + I +P+ E + ++ Y E+ KI++RN RR + + Sbjct: 79 KTLNYNKFNFNYIKKKNTFYIKIPKLNNEFKNIIINNLKKYTEEKKINIRNERRIFKNKI 138 Query: 141 KKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 K + S + + +++N + K+T I+ ID FF+ KKKEI++ Sbjct: 139 NKEK----YSLNEINNIKNKLDKLTKKYIEKIDFFFKIKKKEILN 179 >gi|226291233|gb|EEH46661.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18] Length = 303 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 50/193 (25%), Positives = 84/193 (43%), Gaps = 11/193 (5%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKV-----EAYGSH--VPLN 53 + + + + + + LK D+ LR G RV+P ++ ++V + GS V L Sbjct: 109 DDPFGFTQLDNDIAEAVRKLKDDISKLRAGGRVNPETIESLRVAVTKGDGKGSKETVRLG 168 Query: 54 QVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQ---VLRIPVPETTEER 110 ++ V RML + V + E V + + SNL LNP + L +P+P T+E Sbjct: 169 ELVQVIPKGGRMLTLLVGEDEYVKPITSALLSSNLSLNPQTDAHNSLQLNVPIPPPTKES 228 Query: 111 RLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIK 170 R VK A A E++ +VRN R LK D + ++K+ + K Sbjct: 229 REQSVKDAKAAMERASNAVRNARGAINKKLKHMGVKKLVRPDDLHKQIEKMEKVAEKGQK 288 Query: 171 NIDSFFEEKKKEI 183 + FE +K + Sbjct: 289 EVKDVFEAARKAL 301 >gi|307128651|ref|YP_003880681.1| ribosome recycling factor [Candidatus Sulcia muelleri CARI] gi|306483113|gb|ADM89983.1| ribosome recycling factor [Candidatus Sulcia muelleri CARI] Length = 157 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 83/153 (54%), Gaps = 4/153 (2%) Query: 1 MNQVIDL-QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVT 59 M + DL + K + D KK ++ +R R++ + LD + +E YG+ VP+N+++ + Sbjct: 1 MKESFDLIKKFKLEVKDKKEKFKKQILKIRIDRINENFLDSINIEYYGNKVPINKISTIL 60 Query: 60 VLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 + +++ W+K+ + + + + + + GL I +G+++++ + + TEE R L+K Sbjct: 61 KVNSITVLIKPWEKKYLNIIYKTLLKEDRGLIIINDGKMIKLKISKLTEETRKKLIKKVK 120 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASED 152 + EK KI +RNIR + KK K ED Sbjct: 121 FFLEKKKIEIRNIRNEVN---KKLTKFSSLEED 150 >gi|320584172|gb|EFW98383.1| Mitochondrial ribosome recycling factor [Pichia angusta DL-1] Length = 223 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 44/186 (23%), Positives = 85/186 (45%), Gaps = 8/186 (4%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +N L+++ + + KK + ++ G+ P + + +KV VP +A T+ Sbjct: 42 INPSAILKDVDTQFQSVLDKYKKKITEIKLGKADPQIFNKLKVRVENGTVPFTDIAQTTL 101 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVE---GQVLRIPVPETTEERRLALVKV 117 + L ++V+D + + I +NL LN + Q+LR+ +P TT++ + K Sbjct: 102 K-GKFLTITVFDPKNSKRIISAILGTNLNLNAEEDPKNPQLLRVALPSTTKDLKEKQAKE 160 Query: 118 AHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFE 177 K S +IR + LKK R S D + L NDI+K + + + + ++ Sbjct: 161 LKENFNIFKASSASIRAQVLKDLKKVR----GSADTLRKLLNDIEKTHKNYTEKLTNAYK 216 Query: 178 EKKKEI 183 E +K + Sbjct: 217 EAEKSL 222 >gi|225679501|gb|EEH17785.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03] Length = 303 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 50/193 (25%), Positives = 84/193 (43%), Gaps = 11/193 (5%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKV-----EAYGSH--VPLN 53 + + + + + + LK D+ LR G RV+P ++ ++V + GS V L Sbjct: 109 DDPYGFTQLDNDIAEAVRKLKDDISKLRAGGRVNPETIESLRVAVTKGDGKGSKETVRLG 168 Query: 54 QVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQ---VLRIPVPETTEER 110 ++ V RML + V + E V + + SNL LNP + L +P+P T+E Sbjct: 169 ELVQVIPKGGRMLTLLVGEDEYVKPITSALLSSNLSLNPQTDAHNSLQLNVPIPPPTKES 228 Query: 111 RLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIK 170 R VK A A E++ +VRN R LK D + ++K+ + K Sbjct: 229 REQSVKEAKAAMERASNAVRNARGAINKKLKHMGVKKLVRPDDLHKQIEKMEKVAEKGQK 288 Query: 171 NIDSFFEEKKKEI 183 + FE +K + Sbjct: 289 EVKDVFEAARKAL 301 >gi|291237422|ref|XP_002738637.1| PREDICTED: mitochondrial ribosome recycling factor-like [Saccoglossus kowalevskii] Length = 97 Score = 98.2 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 32/97 (32%), Positives = 58/97 (59%), Gaps = 2/97 (2%) Query: 88 LGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSG 147 + LNP EG ++++P+P+ T E R L K A +K+K++VRN+R M+ +K+ + Sbjct: 1 MNLNPQSEGTMIQVPIPKVTREHREHLSKTAKTMCDKAKVNVRNVRSKVMNDIKQHK--D 58 Query: 148 KASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 AS+D++ LE +Q++TD + + K KE++ Sbjct: 59 HASKDVLKMLEKQVQQLTDDFNASAEQLLVAKNKELL 95 >gi|332027531|gb|EGI67608.1| Ribosome-recycling factor, mitochondrial [Acromyrmex echinatior] Length = 146 Score = 97.4 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 33/145 (22%), Positives = 77/145 (53%), Gaps = 5/145 (3%) Query: 41 VKVEAYGSHVPLNQVANVTVLEPRMLVVSVW-DKEMVASVERGIHESNLGLNPIVEGQVL 99 + V+ G L ++A ++ P+++V++V + + + + + ++ + LNP +G + Sbjct: 2 LSVKFDGKDFTLQELAKISRK-PKLIVLNVSTFPQAIPDILKSLTKNQMKLNPQQDGTTI 60 Query: 100 RIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLEN 159 +P+P+ T+E+R L K A ++ K +VR +R +K ++ K ++D+V +E+ Sbjct: 61 YVPIPKVTKEQREILSKNAKSFYVKCCDNVRQVR---NKQIKAVKQKEKLAKDLVFRIES 117 Query: 160 DIQKITDSTIKNIDSFFEEKKKEIM 184 I ++ + E K+KE++ Sbjct: 118 YIDILSHQYTNKAEQMLETKQKELL 142 >gi|261201714|ref|XP_002628071.1| ribosome recycling factor [Ajellomyces dermatitidis SLH14081] gi|239590168|gb|EEQ72749.1| ribosome recycling factor [Ajellomyces dermatitidis SLH14081] Length = 277 Score = 97.4 bits (242), Expect = 8e-19, Method: Composition-based stats. Identities = 45/190 (23%), Positives = 75/190 (39%), Gaps = 32/190 (16%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKV-----EAYGSH--VPLN 53 + +++ + + LK D+ LR G R +P ++ ++V + GS V L Sbjct: 110 DDPFGFSQLENDIAGAVQRLKDDISKLRAGGRFNPEAIETLRVAVSKGDGKGSKETVKLG 169 Query: 54 QVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLA 113 ++A V RML + V ++E L +P+P T+E R Sbjct: 170 ELAQVIPKGGRMLTILVGEEE------------------------LNVPIPPPTKESRDQ 205 Query: 114 LVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNID 173 VK A A +K+ +VRN R LK D + ++KI + K + Sbjct: 206 SVKDAKAAMDKASTAVRNARGAINKKLKNMGVKKLVRPDDLHKQVEKMEKIAEKGQKEVK 265 Query: 174 SFFEEKKKEI 183 FE KK + Sbjct: 266 DVFEAAKKAL 275 >gi|321248742|ref|XP_003191225.1| hypothetical protein CGB_A1450C [Cryptococcus gattii WM276] gi|317457692|gb|ADV19438.1| Hypothetical Protein CGB_A1450C [Cryptococcus gattii WM276] Length = 252 Score = 97.4 bits (242), Expect = 8e-19, Method: Composition-based stats. Identities = 52/184 (28%), Positives = 87/184 (47%), Gaps = 20/184 (10%) Query: 7 LQNIKDRMGDTISFLK----KDMMTLRTGRVSPSMLDLVKVEAYGSH--VPLNQVANVTV 60 + + +M ++ + K + + R GRVSP++LD V+V + + LN +A+VT Sbjct: 77 VSKARAKMEKSVHWAKAVLFEGVERGR-GRVSPALLDSVRVTLPDTPGTLHLNALASVTT 135 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNL-GLNPIVEG-QVLRIPVPETTEERRLALVKVA 118 L V VWD + VE IH +NL G++P L+IP+ T E+R +++ Sbjct: 136 K-GNALFVEVWDTASLKQVESAIHSANLPGISPQRMAATTLKIPIARPTVEQRTEILRQL 194 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 E +K +R R DG L + +G +++QK+ D K++D Sbjct: 195 AETVEAAKTQIRVARTDGFKALGGRKANGT----------DEVQKVVDEMCKDLDGQLAL 244 Query: 179 KKKE 182 KKE Sbjct: 245 AKKE 248 >gi|239611883|gb|EEQ88870.1| ribosome recycling factor [Ajellomyces dermatitidis ER-3] Length = 277 Score = 97.0 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 45/190 (23%), Positives = 75/190 (39%), Gaps = 32/190 (16%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKV-----EAYGSH--VPLN 53 + +++ + + LK D+ LR G R +P ++ ++V + GS V L Sbjct: 110 DDPFGFSQLENDIAGAVQRLKDDISKLRAGGRFNPEAIETLRVAVSKGDGKGSKETVKLG 169 Query: 54 QVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLA 113 ++A V RML + V ++E L +P+P T+E R Sbjct: 170 ELAQVIPKGGRMLTILVGEEE------------------------LNVPIPPPTKESRDQ 205 Query: 114 LVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNID 173 VK A A +K+ +VRN R LK D + ++KI + K + Sbjct: 206 SVKDAKAAMDKASTAVRNARGAINKKLKNMGVKKLVRPDDLHKQVEKMEKIAEKGQKEVK 265 Query: 174 SFFEEKKKEI 183 FE KK + Sbjct: 266 DVFEAAKKAL 275 >gi|260944354|ref|XP_002616475.1| hypothetical protein CLUG_03716 [Clavispora lusitaniae ATCC 42720] gi|238850124|gb|EEQ39588.1| hypothetical protein CLUG_03716 [Clavispora lusitaniae ATCC 42720] Length = 246 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 43/194 (22%), Positives = 79/194 (40%), Gaps = 18/194 (9%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 ID+ + R+ I K + G+ +P + D ++VE VA T L+ R Sbjct: 58 IDMDEVTKRLQSVIDKFAKHANEAKLGKTNPQIFDHLQVETADGEAVFTSVAQ-TALKGR 116 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVE---GQVLRIPVPETTEERRLALVKVAHAY 121 +++V+D V + S+L +NPI + Q+L++P+P T E + VK Sbjct: 117 NFIITVFDPANTKHVVNAVLASDLNMNPIADPSNKQMLKVPLPPVTTESKKENVKHLKTI 176 Query: 122 AEKSKIS----------VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKN 171 EK + + IR D + K +K D + + +K+ S + Sbjct: 177 YEKYRNGPGGSGKHASTLAAIRADVKSKVAKKKKLT----DAETKVWTEYEKLHKSFTEK 232 Query: 172 IDSFFEEKKKEIMH 185 + F+ + +M Sbjct: 233 LGEVFKTAEAAMMK 246 >gi|237831449|ref|XP_002365022.1| hypothetical protein TGME49_057980 [Toxoplasma gondii ME49] gi|211962686|gb|EEA97881.1| hypothetical protein TGME49_057980 [Toxoplasma gondii ME49] gi|221487127|gb|EEE25373.1| ribosome recycling factor, putative [Toxoplasma gondii GT1] gi|221506812|gb|EEE32429.1| ribosome recycling factor, putative [Toxoplasma gondii VEG] Length = 290 Score = 95.5 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 49/198 (24%), Positives = 94/198 (47%), Gaps = 21/198 (10%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGS----------HVPLNQVA 56 L + + +K+ + LR S L+ + + G+ V + + Sbjct: 90 LNRTNESLQAATERVKQRLAHLRPEAASVLALEKIFLRVPGAASSGSADAQAPVSVRSIV 149 Query: 57 NVTVLEPRMLVVSVWDKE--MVASVERGIHESNLGL-----NPIVEGQV----LRIPVPE 105 V + P L + ++A++E+ + ++LGL N +G L + P Sbjct: 150 TVKQVSPSTLALQPTTSSFQLLAAIEKALSTASLGLSVRTRNADEKGTKRQMELLVDFPP 209 Query: 106 TTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKIT 165 T+ERRL LV A A AE+ ++ +R +RRD ++ L+ +K+G ED ++ L++ +Q++T Sbjct: 210 LTQERRLQLVSEAKAEAEEGRVVLRRLRRDLVEELRGVKKAGGIGEDRISKLQDRVQQVT 269 Query: 166 DSTIKNIDSFFEEKKKEI 183 + I IDS K+K++ Sbjct: 270 EKKIAEIDSALASKEKQL 287 >gi|227547148|ref|ZP_03977197.1| possible protein-synthesizing GTPase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227212367|gb|EEI80263.1| possible protein-synthesizing GTPase [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 68 Score = 95.1 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 39/62 (62%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 ++ + RM + K + +RTGR SPS+LD + VE YG+ PL Q+A+VTV + R L Sbjct: 7 KDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLK 66 Query: 68 VS 69 ++ Sbjct: 67 IN 68 >gi|241958478|ref|XP_002421958.1| ribosomal recycling factor, mitochondrial precursor, putative [Candida dubliniensis CD36] gi|223645303|emb|CAX39959.1| ribosomal recycling factor, mitochondrial precursor, putative [Candida dubliniensis CD36] Length = 307 Score = 95.1 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 81/193 (41%), Gaps = 14/193 (7%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEA--YGSH--VPLNQVANVTV 60 ID Q + + ++ K ++ G+++P + D ++V +G VP VA +V Sbjct: 117 IDFQKVTSNFDNVLAKFNKAATDIKLGKLNPKIFDNLEVNIGNHGQEELVPFTSVAQTSV 176 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQ---VLRIPVPETTEERRLALVKV 117 R +++++D V I S L ++ ++ +++P+P T E + +K Sbjct: 177 K-GRNFIINLFDASYGKHVINSIIGSGLNMSGTIDPTNKFQIKVPIPNITAETKQENIKQ 235 Query: 118 AHAYAEKSKI-----SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNI 172 E K S+ +R + + + K K S D L ++ + + + + Sbjct: 236 LKEIFENLKNNHKSSSLNYVRSEARNKFQSGLKHNKIS-DNQHQLLKKLETLHKTYVDKL 294 Query: 173 DSFFEEKKKEIMH 185 F++ +K I+ Sbjct: 295 TDAFKQAEKSILK 307 >gi|312978248|ref|ZP_07789992.1| ribosome recycling factor [Lactobacillus crispatus CTV-05] gi|310894966|gb|EFQ44036.1| ribosome recycling factor [Lactobacillus crispatus CTV-05] Length = 82 Score = 94.7 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 37/79 (46%), Positives = 52/79 (65%) Query: 105 ETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKI 164 + T ERR + K +AE++KI+VRN+RRD M+ LKK K+G +ED +LE +QK+ Sbjct: 1 QLTGERREEIAKEVGKFAEEAKIAVRNVRRDAMNTLKKDEKNGDITEDEQRNLEKQVQKV 60 Query: 165 TDSTIKNIDSFFEEKKKEI 183 TD K ID +EK+KEI Sbjct: 61 TDDAAKQIDQLADEKRKEI 79 >gi|194247969|dbj|BAG55427.1| hypothetical protein [chlorophyte sp. MBIC11204] Length = 158 Score = 94.7 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 29/80 (36%), Positives = 48/80 (60%) Query: 3 QVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLE 62 IDL + M +I L+ + +LR GR SP MLD +KV+ YG + L + +V+V + Sbjct: 79 DAIDLGETQRAMESSIERLQGILGSLRAGRASPGMLDTLKVDVYGERMSLKSIGSVSVRD 138 Query: 63 PRMLVVSVWDKEMVASVERG 82 +MLVVS +D + + ++E+ Sbjct: 139 QQMLVVSAFDPQTLPNIEKA 158 >gi|207109446|ref|ZP_03243608.1| ribosome recycling factor [Helicobacter pylori HPKX_438_CA4C1] Length = 86 Score = 94.7 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 42/66 (63%) Query: 46 YGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPE 105 YG+ LNQV +V L+ L +S W+K M+ +ER I E+N+G+NP +G+ +++ P Sbjct: 1 YGTPTALNQVGSVMSLDATTLQISPWEKNMLKEIERSIQEANIGVNPNNDGETIKLFFPP 60 Query: 106 TTEERR 111 T E+R Sbjct: 61 MTTEQR 66 >gi|149239126|ref|XP_001525439.1| hypothetical protein LELG_03367 [Lodderomyces elongisporus NRRL YB-4239] gi|146450932|gb|EDK45188.1| hypothetical protein LELG_03367 [Lodderomyces elongisporus NRRL YB-4239] Length = 271 Score = 94.7 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 42/191 (21%), Positives = 80/191 (41%), Gaps = 13/191 (6%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGS----HVPLNQVANVTV 60 ID ++ ++R + +K ++ GR++P + D + V VP VA ++ Sbjct: 80 IDFKDAEERFQHVLEKFEKAANEIKLGRLNPRVFDNLMVAVKDGNKSEEVPFTSVALTSM 139 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQ---VLRIPVPETTEERRLALVKV 117 R +V+++D A++ I S L ++ + LRIP+P T+E + +K Sbjct: 140 K-GRNFIVTMFDPLQSAAIINAIIGSGLNMSGTTDPNNKFNLRIPMPPVTQETKQNDLKQ 198 Query: 118 AHAYAEKSKISVR----NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNID 173 EK+K R +R + S K+ K S+ L ++K+ + Sbjct: 199 LKELYEKTKNGARGSLTGVRGEVRQKFHGSLKTHKLSDSENKQLL-QLEKLYKLFADKLQ 257 Query: 174 SFFEEKKKEIM 184 + +K IM Sbjct: 258 DVHRKFEKSIM 268 >gi|68476905|ref|XP_717430.1| potential mitochondrial ribosome recycling factor [Candida albicans SC5314] gi|68477094|ref|XP_717340.1| potential mitochondrial ribosome recycling factor [Candida albicans SC5314] gi|46439049|gb|EAK98371.1| potential mitochondrial ribosome recycling factor [Candida albicans SC5314] gi|46439143|gb|EAK98464.1| potential mitochondrial ribosome recycling factor [Candida albicans SC5314] gi|238879856|gb|EEQ43494.1| conserved hypothetical protein [Candida albicans WO-1] Length = 261 Score = 94.3 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 81/193 (41%), Gaps = 14/193 (7%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEA----YGSHVPLNQVANVTV 60 ID Q + + +S K ++ G+++P + D ++V + VP VA +V Sbjct: 71 IDFQKVTSNFDNVLSKFNKAATDIKLGKLNPKIFDNLEVNIGNHGHEELVPFTSVAQTSV 130 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQ---VLRIPVPETTEERRLALVKV 117 R +++++D V I S L ++ ++ +++P+P T E + +K Sbjct: 131 K-GRNFIINLFDAGYGKHVINSIIGSGLNMSGTIDPTNKFQIKVPIPNITTETKQENIKQ 189 Query: 118 AHAYAEKSK-----ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNI 172 E K S+ +R + + + S K K S D L ++ + + + + Sbjct: 190 LKEIFENLKNNHKSNSLNYVRSEARNKFQSSLKHNKIS-DSQHQLLKKLETLHKTYVDKL 248 Query: 173 DSFFEEKKKEIMH 185 F++ +K I+ Sbjct: 249 TDAFKQAEKSILK 261 >gi|300121780|emb|CBK22354.2| unnamed protein product [Blastocystis hominis] Length = 142 Score = 92.8 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 75/147 (51%), Gaps = 7/147 (4%) Query: 37 MLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEG 96 M+ +KVE G ++ +A V + ++ V + + S+L LNP ++ Sbjct: 1 MIGQLKVELDGKSAVMSSIAQVAANTQISYL-------NLSFVVKTLKSSDLNLNPQIDK 53 Query: 97 QVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVAS 156 +RI +P+TT+E R ++K E+ K +R +R+ MD ++ K+ S+D ++S Sbjct: 54 NSVRIQIPKTTKETRQKMIKQVALECEQQKSKLRAVRKRYMDKVRVIEKNVSISKDDISS 113 Query: 157 LENDIQKITDSTIKNIDSFFEEKKKEI 183 ++ I +ITD K + + K+KE+ Sbjct: 114 MKKKIDEITDRVSKEMAEMMKRKEKEL 140 >gi|254586291|ref|XP_002498713.1| ZYRO0G16830p [Zygosaccharomyces rouxii] gi|238941607|emb|CAR29780.1| ZYRO0G16830p [Zygosaccharomyces rouxii] Length = 243 Score = 92.8 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 41/187 (21%), Positives = 81/187 (43%), Gaps = 15/187 (8%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ ++ +T+ KK + + G +P + D +K++ GS ++ A+ + L Sbjct: 63 IKKAQNSFENTLELHKKKLNEFKQGVANPRIFDELKLQ-NGSK--FSEAASTSTKGKNAL 119 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPI---VEGQVLRIPVPETTEERRLALVKVAHAYAE 123 +V+V+D + V I + L LNP Q L+I +P T E R + K E Sbjct: 120 LVTVYDPKDTKHVISTIMAAGLNLNPERVPNNDQQLKISLPPMTTETRTRMCKDLKKVFE 179 Query: 124 K-----SKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 + SK S+ ++R + + K K D V D++K+ + + + Sbjct: 180 EYKNSSSKDSLGHVRGE----ILKDLKKLAKKNDSVRKAVQDVEKVHKDYVNKMQQQLAQ 235 Query: 179 KKKEIMH 185 +K +M+ Sbjct: 236 AEKNVMN 242 >gi|325117497|emb|CBZ53049.1| conserved hypothetical protein [Neospora caninum Liverpool] Length = 344 Score = 92.8 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 92/198 (46%), Gaps = 21/198 (10%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSH----------VPLNQVA 56 L + + + +K + LR S L+ + + + V + V Sbjct: 144 LDKTNESLQGATNRVKHRLAQLRPEAASVLALEKIFLRLPAAPPTRPSDGLAPVSVRSVV 203 Query: 57 NVTVLEPRMLVVSVWDKEM--VASVERGIHESNLGLNPIVEGQ---------VLRIPVPE 105 V + P L + + + A++E+ + ++LGL+ + + + + P Sbjct: 204 TVKQVSPSTLALQPLESSLQLFAAIEKALSTASLGLSVRTKNEDEKGAKRQREMLVDFPA 263 Query: 106 TTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKIT 165 T+ERRL LV A A AE+ ++ +R +RR+ ++ L+ +K+G ED ++ L++ +Q+ T Sbjct: 264 LTQERRLQLVNEARAEAEEGRVVLRRLRRELLEELRGVKKAGGIGEDRISKLQDRVQQAT 323 Query: 166 DSTIKNIDSFFEEKKKEI 183 + I ID+ K+K++ Sbjct: 324 EKKIAEIDTTLSSKEKQL 341 >gi|296806365|ref|XP_002843992.1| ribosomal recycling factor [Arthroderma otae CBS 113480] gi|238845294|gb|EEQ34956.1| ribosomal recycling factor [Arthroderma otae CBS 113480] Length = 250 Score = 92.0 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 66/151 (43%), Gaps = 21/151 (13%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKVEAY-------------- 46 D + D + D ++ LK+D+ LR G RV+P ++ ++V + Sbjct: 95 EDPFDFAPLHDSIKDAVTRLKEDLAKLRGGGRVTPEAIENIRVSLHKVGGSDGGKGKKAA 154 Query: 47 --GSHV-PLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQ---VLR 100 G L +VA+V R + + V ++ V +V I S+L LNP + L Sbjct: 155 SSGKETVRLGEVASVIPKGGRTVSILVGEEHDVKAVMSAITASDLSLNPQGDPHNPLQLN 214 Query: 101 IPVPETTEERRLALVKVAHAYAEKSKISVRN 131 + +P T+E R VK A A EK+ + R Sbjct: 215 VAIPPPTKESREQTVKDAKAAMEKASNATRR 245 >gi|67925885|ref|ZP_00519171.1| ribosome releasing factor [Crocosphaera watsonii WH 8501] gi|67852264|gb|EAM47737.1| ribosome releasing factor [Crocosphaera watsonii WH 8501] Length = 56 Score = 91.6 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 37/55 (67%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 L ++KD M ++ ++ T+RTGR +P++LD V V+ YG+ PLNQ+AN++ Sbjct: 2 LDDLKDNMQKSVEATQRSFNTIRTGRANPAILDRVTVDYYGTETPLNQLANISTP 56 >gi|221481837|gb|EEE20207.1| hypothetical protein TGGT1_098720 [Toxoplasma gondii GT1] Length = 270 Score = 91.2 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 43/193 (22%), Positives = 73/193 (37%), Gaps = 17/193 (8%) Query: 3 QVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLE 62 +V + + M I + +D+ L R + + V A G L+ +A V V Sbjct: 72 EVFSVAAYEADMKAAIDKMVQDISALLVHRERAEHFERIPVSAGGEKRRLSDLAQVVVRG 131 Query: 63 PRMLVVSVWDK-------------EMVASVERGIHESNLGLNPIVEGQV-LRIPVPETTE 108 + V V+ V + ++ EG +R+ +P+ T Sbjct: 132 ASTVHVHVFSVFFSALSLMSFFFLNSFCQVMSALRAADSKWTLQQEGNTAVRLQLPKVTS 191 Query: 109 ERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLEND--IQKITD 166 E R L A + +K +VRN+R+ G HL K + S D V E D + + + Sbjct: 192 EMREELKTKARVFLVTAKSAVRNMRQAGRSHLHKLQ-FKSRSIDDVKRRELDASLTTLME 250 Query: 167 STIKNIDSFFEEK 179 + + D F EK Sbjct: 251 TYVAKCDKVFNEK 263 >gi|237843331|ref|XP_002370963.1| ribosome recycling factor domain-containing protein [Toxoplasma gondii ME49] gi|211968627|gb|EEB03823.1| ribosome recycling factor domain-containing protein [Toxoplasma gondii ME49] gi|221502335|gb|EEE28068.1| ribosome recycling factor, putative [Toxoplasma gondii VEG] Length = 266 Score = 91.2 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 43/193 (22%), Positives = 73/193 (37%), Gaps = 17/193 (8%) Query: 3 QVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLE 62 +V + + M I + +D+ L R + + V A G L+ +A V V Sbjct: 68 EVFSVAAYEADMKAAIDKMVQDISALLVHRERAEHFERIPVSAGGEKRRLSDLAQVVVRG 127 Query: 63 PRMLVVSVWDK-------------EMVASVERGIHESNLGLNPIVEGQV-LRIPVPETTE 108 + V V+ V + ++ EG +R+ +P+ T Sbjct: 128 ASTVHVHVFSVFFSALSLMSFFFLNSFCQVMSALRAADSKWTLQQEGNTAVRLQLPKVTS 187 Query: 109 ERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLEND--IQKITD 166 E R L A + +K +VRN+R+ G HL K + S D V E D + + + Sbjct: 188 EMREELKTKARVFLVTAKSAVRNMRQAGRSHLHKLQ-FKSRSIDDVKRRELDASLTTLME 246 Query: 167 STIKNIDSFFEEK 179 + + D F EK Sbjct: 247 TYVAKCDKVFNEK 259 >gi|307568226|pdb|3LF9|A Chain A, Crystal Structure Of Hiv Epitope-Scaffold 4e10_d0_1is1a_001_c Length = 121 Score = 91.2 bits (226), Expect = 6e-17, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 44/80 (55%) Query: 107 TEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITD 166 TEERR LVK+ AE +++VRNI RD + L K + + ++ +IQK+TD Sbjct: 34 TEERRKDLVKIVRGEAEGGRVAVRNIARDAANDLAALGKDKEVNWFDISQALWEIQKLTD 93 Query: 167 STIKNIDSFFEEKKKEIMHF 186 +K ID K+KE+M Sbjct: 94 VAVKKIDEVLAAKEKELMEV 113 Score = 36.5 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 7/24 (29%), Positives = 16/24 (66%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTG 31 ++ ++RM ++ LK ++ +RTG Sbjct: 7 KDAQERMDKSVEALKNNLSKVRTG 30 >gi|328354509|emb|CCA40906.1| Ribosome-recycling factor [Pichia pastoris CBS 7435] Length = 223 Score = 90.9 bits (225), Expect = 7e-17, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 16/162 (9%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ I+DR T+ +K + ++ G+ +P + D +KV P VA T R L Sbjct: 69 LKEIEDRFKLTLQEHQKKINEIKLGKSNPKIFDSLKVSIAKDLQPFPSVAQTTSK-GRNL 127 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVE---GQVLRIPVPETTEERRLALVKVAHAYAE 123 +V+V+D +V V I S L LNP V+ Q+L++P+ T E + +K E Sbjct: 128 LVTVFDPSLVKYVVSSILSSGLNLNPEVDPKNPQLLKVPLTAPTAETKKETLKALKNNLE 187 Query: 124 KSKISVRN------IRRDGMDHLKKSRKSGKASEDMVASLEN 159 + S+ N IR + K ++ ED + + + Sbjct: 188 HYRHSITNKHSLASIRAHYLKEFKGNK------EDSIKNSKK 223 >gi|149019534|ref|ZP_01834853.1| ribosome recycling factor [Streptococcus pneumoniae SP23-BS72] gi|147930909|gb|EDK81889.1| ribosome recycling factor [Streptococcus pneumoniae SP23-BS72] Length = 74 Score = 90.5 bits (224), Expect = 9e-17, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 1/68 (1%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M VI ++ K+RM + L ++ +R GR + S+LD V VE YG PLNQ+A++T+ Sbjct: 1 MANVI-IEKAKERMTQSHQSLAREFGGIRAGRANASLLDRVHVEYYGVETPLNQIASITI 59 Query: 61 LEPRMLVV 68 E R+L+V Sbjct: 60 PEARVLLV 67 >gi|169622246|ref|XP_001804532.1| hypothetical protein SNOG_14341 [Phaeosphaeria nodorum SN15] gi|160704730|gb|EAT78212.2| hypothetical protein SNOG_14341 [Phaeosphaeria nodorum SN15] Length = 819 Score = 90.5 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 42/190 (22%), Positives = 83/190 (43%), Gaps = 11/190 (5%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKVEA----YGSHV-PLNQV 55 ++ D+ N++ ++ I L ++ LR G +++P +++ +KV+ +G L + Sbjct: 626 DEAYDVSNLEAQILKAIEKLTHELSQLRGGGKLNPEVVESLKVQLGTAGHGKETVKLGDI 685 Query: 56 ANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNP----IVEGQVLRIPVPETTEERR 111 A V V RM+ V +++ + + I S L P +++P+P T E R Sbjct: 686 AQV-VPRGRMINVVCGEEDHIKPITTAIASSPHSLTPLAPDASNPLTIQVPLPPPTGESR 744 Query: 112 LALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKN 171 A V A AEK+ ++ R+D L+K + D + + ++++ Sbjct: 745 QAAVDAAVKAAEKADKMIQVARQDHNKRLRKFEVNRDVLPDDLQKAKKRMEEVVKKGHTE 804 Query: 172 IDSFFEEKKK 181 I E KK Sbjct: 805 IKRISEGAKK 814 >gi|301126635|ref|XP_002909859.1| conserved hypothetical protein [Phytophthora infestans T30-4] gi|262101705|gb|EEY59757.1| conserved hypothetical protein [Phytophthora infestans T30-4] Length = 109 Score = 90.1 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 35/108 (32%), Positives = 57/108 (52%), Gaps = 2/108 (1%) Query: 76 VASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRD 135 + V++ I +N + + L I P+ ++E R L+K AE+++ VR +R+D Sbjct: 1 MPDVKKAIEGTNAVYSVREDVSSLEISFPKMSKETRADLLKATKKQAEQARQHVRRVRQD 60 Query: 136 GMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 M+H KK + + SED V + IQK TDS I ID K+K++ Sbjct: 61 AMNHAKKLKDA--VSEDDVEVQKERIQKATDSAIAEIDKLLAAKEKDL 106 >gi|312220443|emb|CBY00384.1| hypothetical protein [Leptosphaeria maculans] Length = 403 Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 81/184 (44%), Gaps = 11/184 (5%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKVE----AYGSH-VPLNQV 55 ++ D+ ++ + I L D+ LR+G +++P +++ +KV+ + G V L + Sbjct: 90 DEAYDVSGLETEILKAIEKLTHDLSLLRSGGKMNPEVVEALKVQLGTVSEGKESVRLGDI 149 Query: 56 ANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPI----VEGQVLRIPVPETTEERR 111 A V V R+L + ++ + + I S L P+ +++P+P T E R Sbjct: 150 AQV-VPRGRVLNIVCGEEGHIKPISSAIASSPHSLTPLAPEPSNPLTIQVPLPPPTGESR 208 Query: 112 LALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKN 171 A V+ + AE++ ++ R++ L+K + + D + + ++ + Sbjct: 209 RAAVEASIKAAERADKWIQTARQEHNKKLRKFELNKEVLPDDLQKAKKRMEDVVKKGHTE 268 Query: 172 IDSF 175 + Sbjct: 269 VKRI 272 >gi|146331652|gb|ABQ22332.1| mitochondrial ribosome recycling factor precursor-like protein [Callithrix jacchus] Length = 90 Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 33/91 (36%), Positives = 55/91 (60%), Gaps = 2/91 (2%) Query: 94 VEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDM 153 VEG ++R+P+P+ T E R LVK+A K+K S+R +R + M+ LKKS+ + SED Sbjct: 1 VEGTLIRVPIPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNAMNKLKKSKDT--VSEDT 58 Query: 154 VASLENDIQKITDSTIKNIDSFFEEKKKEIM 184 + +E I ++ D T+ ++ K KE++ Sbjct: 59 IRLIEKQISQMADDTVAELERHLAVKTKELL 89 >gi|330924822|ref|XP_003300793.1| hypothetical protein PTT_12143 [Pyrenophora teres f. teres 0-1] gi|311324892|gb|EFQ91113.1| hypothetical protein PTT_12143 [Pyrenophora teres f. teres 0-1] Length = 280 Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 80/185 (43%), Gaps = 11/185 (5%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKVE----AYGSH-VPLNQV 55 ++ D+ ++ + + L D+ LR+G R++P +++ +KV+ ++G V L + Sbjct: 87 DKAYDVSELEASILKALEKLTHDLSQLRSGGRLNPDIVENLKVQLGTASHGKESVRLGDI 146 Query: 56 ANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNP----IVEGQVLRIPVPETTEERR 111 A V V R+L V ++ V + I S L P +++P+P T E R Sbjct: 147 AQV-VPRGRVLNVICGEEAHVKPITTAIAASPHSLTPLSPESNNPLTIQVPLPPPTGESR 205 Query: 112 LALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKN 171 A V A +E++ + R++ L++ + + D + + ++++ Sbjct: 206 RAAVDAAGKASERADKLIHQARQEHNKKLRQYSLNREVLPDDLQKAKKLMEEVVKKGHVE 265 Query: 172 IDSFF 176 + Sbjct: 266 VKRIV 270 >gi|50543588|ref|XP_499960.1| YALI0A10813p [Yarrowia lipolytica] gi|60390378|sp|Q6CHA2|RRF1_YARLI RecName: Full=Ribosome-recycling factor, mitochondrial; Short=RRF; AltName: Full=Ribosome-releasing factor, mitochondrial; Flags: Precursor gi|49645825|emb|CAG83889.1| YALI0A10813p [Yarrowia lipolytica] Length = 264 Score = 88.9 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 40/190 (21%), Positives = 75/190 (39%), Gaps = 10/190 (5%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHV-PLNQVANVTVLE 62 +I+ +D +++ ++ G SP +++ ++V+ V + +A+V + Sbjct: 72 MIEWNKFEDLSAKSVAAFAAKAKEIKAGNNSPDLINNIEVKISKDEVYQIKDIASVALKG 131 Query: 63 PRMLVVSVWDKEMVASVERGIHESNLGLNPI---VEGQVLRIPVPETTEERRLALVKVAH 119 R L +SV+D V I S+L +NP Q+L IP+P + E R K Sbjct: 132 GRTLSISVYDPSHTKQVTASILASDLNMNPQPQANSPQILNIPLPPPSAESRAEQQKELK 191 Query: 120 AYAEKSKI------SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNID 173 A K + IR KK +D+V + +++ + I+ Sbjct: 192 ALYNAFKADKKLTSGLAAIRDAFKKDHKKMADQKSIGKDVVKREDKKFEELQKAWTSKIE 251 Query: 174 SFFEEKKKEI 183 F+ EI Sbjct: 252 KEFKTVSDEI 261 >gi|189190870|ref|XP_001931774.1| conserved hypothetical protein [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187973380|gb|EDU40879.1| conserved hypothetical protein [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 280 Score = 88.5 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 84/190 (44%), Gaps = 11/190 (5%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKVE----AYGSH-VPLNQV 55 ++ D+ ++ + + L D+ LR+G +++P +++ +KV+ ++G V L + Sbjct: 87 DKAYDVSELEASILKALEKLTHDLSQLRSGGKLNPEIVESLKVQLGTASHGKESVRLGDI 146 Query: 56 ANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNP----IVEGQVLRIPVPETTEERR 111 A V V R+L V ++ V + I S L P +++P+P T E R Sbjct: 147 AQV-VPRGRVLNVICGEEAHVKPITTAIAASPHSLTPLSPESNNPLTIQVPLPPPTGESR 205 Query: 112 LALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKN 171 A V A +E++ ++ R++ L++ + + D + + ++++ Sbjct: 206 RAAVDAAGKASERADRLIQQARQEHNKKLRQYGLNREVLPDDLQKAKKLMEEVVKKGHVE 265 Query: 172 IDSFFEEKKK 181 + + KK Sbjct: 266 VKRIVDGAKK 275 >gi|256270599|gb|EEU05773.1| Rrf1p [Saccharomyces cerevisiae JAY291] Length = 230 Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 81/187 (43%), Gaps = 16/187 (8%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ + + T+ K+ M ++ G +P + + + + ++ +A ++ L Sbjct: 52 LKKAETQFKKTLEVQKQKMNEIKQGNFNPKVFNSLVFK---NNRKFTDIATTSLKGKNAL 108 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPI---VEGQVLRIPVPETTEERRLALVKVAHAYAE 123 +++V+D + V +V G+ +NL L P L++ +P T E RL + K E Sbjct: 109 LITVFDPKDVKTVISGVLAANLNLTPERVPNNDLQLKVSLPPPTTESRLKVAKDLKRVFE 168 Query: 124 KSK-----ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 + K S+ IR + K +K D V E D++K+ + + F++ Sbjct: 169 EYKQSSLKDSLGTIRGSILKEFKSFKKD-----DAVRKAERDLEKLHKDYVNKLHDQFQK 223 Query: 179 KKKEIMH 185 +K I+ Sbjct: 224 VEKSILK 230 >gi|255721287|ref|XP_002545578.1| hypothetical protein CTRG_00359 [Candida tropicalis MYA-3404] gi|240136067|gb|EER35620.1| hypothetical protein CTRG_00359 [Candida tropicalis MYA-3404] Length = 256 Score = 87.8 bits (217), Expect = 6e-16, Method: Composition-based stats. Identities = 40/194 (20%), Positives = 79/194 (40%), Gaps = 16/194 (8%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSH-----VPLNQVANVT 59 ID ++ +S K ++ G+++P + D ++V GSH VP VA + Sbjct: 66 IDFDHVTKNFETVLSKFNKAATDIKLGKLNPKIFDNLEVNI-GSHGQEELVPFTSVAQTS 124 Query: 60 VLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQ---VLRIPVPETTEERRLALVK 116 V R +++++D V I S L ++ V+ +++P+P T E + K Sbjct: 125 VK-GRNFIINLFDASYGKHVINSIIGSGLNMSGTVDPTNKFQVKVPIPTITSETKQENAK 183 Query: 117 VAHAYAEKSK-----ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKN 171 E K S+ ++R + + K K S D L ++ + + + Sbjct: 184 QLKEIYESYKNNHKTNSLNSVRGEVRHKFQSQLKHSKIS-DAQHQLLKKLENLHKTYLDK 242 Query: 172 IDSFFEEKKKEIMH 185 + F+ +K I+ Sbjct: 243 LTEAFKTAEKSILK 256 >gi|309800200|ref|ZP_07694383.1| ribosome recycling factor [Streptococcus infantis SK1302] gi|308116171|gb|EFO53664.1| ribosome recycling factor [Streptococcus infantis SK1302] Length = 75 Score = 86.6 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 38/60 (63%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ K+RM + L ++ ++R GR + S+LD + VE YG PLNQ+A++T+ E R+ Sbjct: 6 VEKAKERMTQSHHSLAREFGSIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEARVF 65 >gi|27461183|gb|AAL79355.1| ribosome recycling factor [Phytoplasma sp. DIV] Length = 94 Score = 86.2 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 44/83 (53%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L +++ +M + K+ +RTG +P++LD + V YG+ L +A+++V E L Sbjct: 9 LASLETKMTQAQEVMLKNFCDIRTGTANPNILDKITVNYYGAPXFLKTLASISVSEGNQL 68 Query: 67 VVSVWDKEMVASVERGIHESNLG 89 + +D ++ ++++ LG Sbjct: 69 NIKPYDSXLIPNIKKVGXAPKLG 91 >gi|316969816|gb|EFV53856.1| putative ribosome recycling factor [Trichinella spiralis] Length = 267 Score = 86.2 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 38/195 (19%), Positives = 82/195 (42%), Gaps = 20/195 (10%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYG-SHVPLNQVANVT 59 + + +D + M + + L++ + + + + + + VE G VPLN +A VT Sbjct: 80 LEKYLDEHAVVSEMENEVEKLREQYVQQLSLKNNIRAFEALSVEFDGKEPVPLNHIAQVT 139 Query: 60 VLEPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA 118 + P + ++++ + V +V + I ES L + + L +P+P ++ +R L K A Sbjct: 140 LKNPHLAIINLSSTPQAVKAVMKAIAESGLDVGVQQQNAFLYVPLPRPSKAKREQLAKNA 199 Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDI--------QKITDSTIK 170 + +R I R L+K SL+ +I + + + Sbjct: 200 KILYNRCHDQLREIMRYHEVKLRKKE----------HSLQKEIYNSLIFHLEDLVRIYAQ 249 Query: 171 NIDSFFEEKKKEIMH 185 + + K++E+M Sbjct: 250 KAEKLMKAKQEELMQ 264 >gi|151943982|gb|EDN62275.1| mitochondrial ribosome recycling factor [Saccharomyces cerevisiae YJM789] gi|190405822|gb|EDV09089.1| mitochondrial ribosome recycling factor [Saccharomyces cerevisiae RM11-1a] Length = 230 Score = 85.8 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 80/185 (43%), Gaps = 16/185 (8%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ + + T+ K+ M ++ G +P + + + + ++ +A ++ L Sbjct: 52 LKKAETQFKKTLEVQKQKMNEIKQGNFNPKVFNSLVFK---NNRKFTDIATTSLKGKNAL 108 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPI---VEGQVLRIPVPETTEERRLALVKVAHAYAE 123 +++V+D + V +V G+ +NL L P L++ +P T E RL + K E Sbjct: 109 LITVFDPKDVKTVISGVLAANLNLTPERVPNNDLQLKVSLPPPTTESRLKVAKDLKRVFE 168 Query: 124 KS-----KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 + K S+ IR + K +K D V E D++K+ + + F++ Sbjct: 169 EYKQSSLKDSLGTIRGSILKEFKSFKKD-----DAVRKAERDLEKLHKDYVNKLHDQFQK 223 Query: 179 KKKEI 183 +K I Sbjct: 224 VEKSI 228 >gi|207344733|gb|EDZ71776.1| YHR038Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi|259147070|emb|CAY80324.1| Rrf1p [Saccharomyces cerevisiae EC1118] Length = 231 Score = 85.8 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 80/185 (43%), Gaps = 16/185 (8%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ + + T+ K+ M ++ G +P + + + + ++ +A ++ L Sbjct: 53 LKKAETQFKKTLEVQKQKMNEIKQGNFNPKVFNSLVFK---NNRKFTDIATTSLKGKNAL 109 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPI---VEGQVLRIPVPETTEERRLALVKVAHAYAE 123 +++V+D + V +V G+ +NL L P L++ +P T E RL + K E Sbjct: 110 LITVFDPKDVKTVISGVLAANLNLTPERVPNNDLQLKVSLPPPTTESRLKVAKDLKRVFE 169 Query: 124 KS-----KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 + K S+ IR + K +K D V E D++K+ + + F++ Sbjct: 170 EYKQSSLKDSLGTIRGSILKEFKSFKKD-----DAVRKAERDLEKLHKDYVNKLHDQFQK 224 Query: 179 KKKEI 183 +K I Sbjct: 225 VEKSI 229 >gi|6321827|ref|NP_011903.1| Rrf1p [Saccharomyces cerevisiae S288c] gi|731650|sp|P38771|RRF1_YEAST RecName: Full=Ribosome-recycling factor, mitochondrial; Short=RRF; AltName: Full=Ribosome-releasing factor, mitochondrial; Flags: Precursor gi|488171|gb|AAB68906.1| Yhr038wp [Saccharomyces cerevisiae] gi|3327238|dbj|BAA31687.1| FIL1 [Saccharomyces cerevisiae] gi|285809942|tpg|DAA06729.1| TPA: Rrf1p [Saccharomyces cerevisiae S288c] Length = 230 Score = 84.7 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 80/185 (43%), Gaps = 16/185 (8%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ + + T+ K+ M ++ G +P + + + + ++ +A ++ L Sbjct: 52 LKKAETQFKKTLEIQKQKMNEIKQGNFNPKVFNSLVFK---NNRKFTDIATTSLKGKNAL 108 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPI---VEGQVLRIPVPETTEERRLALVKVAHAYAE 123 +++V+D + V +V G+ +NL L P L++ +P T E RL + K E Sbjct: 109 LITVFDPKDVKTVISGVLAANLNLTPERVPNNDLQLKVSLPPPTTESRLKVAKDLKRVFE 168 Query: 124 KS-----KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 + K S+ IR + K +K D V E D++K+ + + F++ Sbjct: 169 EYKQSSLKDSLGTIRGSILKEFKSFKKD-----DAVRKAERDLEKLHKDYVNKLHDQFQK 223 Query: 179 KKKEI 183 +K I Sbjct: 224 VEKSI 228 >gi|212541408|ref|XP_002150859.1| ribosome recycling factor, putative [Penicillium marneffei ATCC 18224] gi|210068158|gb|EEA22250.1| ribosome recycling factor, putative [Penicillium marneffei ATCC 18224] Length = 293 Score = 84.7 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 44/188 (23%), Positives = 91/188 (48%), Gaps = 9/188 (4%) Query: 3 QVIDLQNIKDRMGDTISFLKKDMMTLRTG---RVSPSMLDLVKV---EAYGSHVPLNQVA 56 D ++ + D ++ K+D+ LR+G R++P +++ ++V + V L++VA Sbjct: 101 DPFDFSQLQTGISDALTRFKEDLQKLRSGGGGRLNPEVIEQLRVHIVKGSNETVRLSEVA 160 Query: 57 NVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQ---VLRIPVPETTEERRLA 113 V R + + + +++++ V I S+L L P + L +P+P T+E R Sbjct: 161 QVVPKGGRAVAIIIGEEDLIKPVNSAIISSSLSLTPQPDAHNPLQLNVPIPPPTKESRDQ 220 Query: 114 LVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNID 173 VK A +K+ +VR+ R L+ +K +A D + + ++K+ + K++ Sbjct: 221 AVKAAKGAMDKAASAVRSARAAIHKKLQDMQKRKEARPDDIRKAHDQMEKLVEKAQKDVK 280 Query: 174 SFFEEKKK 181 FE +K Sbjct: 281 DTFESARK 288 >gi|323304735|gb|EGA58496.1| Rrf1p [Saccharomyces cerevisiae FostersB] Length = 182 Score = 83.9 bits (207), Expect = 9e-15, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 80/185 (43%), Gaps = 16/185 (8%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 L+ + + T+ K+ M ++ G +P + + + + ++ +A ++ L Sbjct: 4 LKKAETQFKKTLEVQKQKMNEIKQGNFNPKVFNSLVFK---NNRKFTDIATTSLKGKNAL 60 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPI---VEGQVLRIPVPETTEERRLALVKVAHAYAE 123 +++V+D + V +V G+ +NL L P L++ +P T E RL + K E Sbjct: 61 LITVFDPKDVKTVISGVLAANLNLTPERVPNNDLQLKVSLPPPTTESRLKVAKDLKRVFE 120 Query: 124 KS-----KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 + K S+ IR + K +K D V E D++K+ + + F++ Sbjct: 121 EYKQSSLKDSLGTIRGSILKEFKSFKKD-----DAVRKAERDLEKLHKDYVNKLHDQFQK 175 Query: 179 KKKEI 183 +K I Sbjct: 176 VEKSI 180 >gi|46107942|ref|XP_381030.1| hypothetical protein FG00854.1 [Gibberella zeae PH-1] Length = 858 Score = 83.5 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 66/163 (40%), Gaps = 7/163 (4%) Query: 19 SFLKKDMMT-LRTGRVSPSMLDLVKV-----EAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 + K + + GR +P+ L + V E + PL ++A V R + + V D Sbjct: 687 AHFKTQLAGMIHGGRFNPTNLGSLPVTIKDEEGADATFPLRELAQVVPRSGRAISLLVND 746 Query: 73 KEMVASVERGIHES-NLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 KE + + + S P + + ER+ + + ++ K +RN Sbjct: 747 KEYIKPIMSAVQSSREFNQQPQRSEDNELELLLKVELERKDDVERRVKEAVQQWKDRIRN 806 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDS 174 R LK +K+G D+V E ++QK+ D +K ID Sbjct: 807 ARSRHEKTLKDWKKNGTVLPDIVKKAEKELQKVQDKKMKEIDQ 849 >gi|45184750|ref|NP_982468.1| AAL074Cp [Ashbya gossypii ATCC 10895] gi|60390517|sp|Q75F02|RRF1_ASHGO RecName: Full=Ribosome-recycling factor, mitochondrial; Short=RRF; AltName: Full=Ribosome-releasing factor, mitochondrial; Flags: Precursor gi|44980096|gb|AAS50292.1| AAL074Cp [Ashbya gossypii ATCC 10895] Length = 226 Score = 83.5 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 69/182 (37%), Gaps = 6/182 (3%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 ++ +R T+ KK + ++ G+ +M D + V ++A +V ML Sbjct: 46 VKKATERFQHTVELHKKRLGQMKAGKPDATMFDGLAV--GNEKQKFTELAATSVKGKNML 103 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIV---EGQVLRIPVPETTEERRLALVKVAHAYAE 123 +V+V+D + V I + L + Q L+I +P T E R L + E Sbjct: 104 IVTVFDPKDTKRVASAIVGAGLNVTTERVLENQQQLKISLPPVTTETRERLCRDMKKVFE 163 Query: 124 KSKISV-RNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 + K S R+ + K K D V + +I+ + + + +K Sbjct: 164 EYKNSANRHSLGHVRSEVLKELKKLDKKNDSVRKVIQEIENLHKEYTAMLQEQLKHAEKN 223 Query: 183 IM 184 M Sbjct: 224 AM 225 >gi|241614866|ref|XP_002406692.1| ribosome recycling factor, putative [Ixodes scapularis] gi|215500850|gb|EEC10344.1| ribosome recycling factor, putative [Ixodes scapularis] Length = 263 Score = 81.6 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 80/191 (41%), Gaps = 15/191 (7%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 +++V+ +Q + M + L+ + + +D ++V L +VA ++ Sbjct: 78 LSEVVRIQQFRSEMQKVLQRLQDSFVKHLSLHSVAGNIDKIRVHVDSQEYSLAEVAQISK 137 Query: 61 LEPRMLVVSV--WDKEMVASVERG-----IHESNLGLNPIVEGQVLRIPVPETTEERRLA 113 +++V+++ + + ++G + G T E R Sbjct: 138 KSAQLIVLNMASFPDVTGTLIHDAKLSRPCALLDVGRSDNRPGTF------RVTREHRET 191 Query: 114 LVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNID 173 L K A A K+K + I R + ++K++ SED+V + ++ ++T++ D Sbjct: 192 LSKNAKALFVKAKEDLVAIERKYLKEIQKNK--LGISEDVVYNASLQVKMEAENTVEQAD 249 Query: 174 SFFEEKKKEIM 184 + + K+KE++ Sbjct: 250 TMTKAKQKELL 260 >gi|153820415|ref|ZP_01973082.1| ribosome recycling factor [Vibrio cholerae NCTC 8457] gi|126509043|gb|EAZ71637.1| ribosome recycling factor [Vibrio cholerae NCTC 8457] Length = 60 Score = 81.2 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 25/58 (43%), Positives = 34/58 (58%) Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 VRNIRRD + LK K + SED + +IQK+TD+ +K ID K+KE+M Sbjct: 3 VRNIRRDANNDLKALLKDKEISEDDERRAQEEIQKLTDAAVKKIDDVLAAKEKELMEV 60 >gi|302924011|ref|XP_003053795.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256734736|gb|EEU48082.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 873 Score = 80.5 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 65/163 (39%), Gaps = 7/163 (4%) Query: 19 SFLKKDMMT-LRTGRVSPSMLDLVKV-----EAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 + K + + GR +P+ L + V EA PL ++A V R + + V D Sbjct: 702 AHFKTQLAGMVHGGRFNPTNLGSLPVAVKDPEAGDGSFPLRELAQVVPRSGRTISLLVHD 761 Query: 73 KEMVASVERGIHES-NLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 K + + + S P + + ER+ +V+ + K +R Sbjct: 762 KAYIKPIMSAVQSSREFNQQPQRSEDNELELLLKVELERKDDVVRRIKEAVQLWKDRIRQ 821 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDS 174 R LK +K+G D+V E ++QK+ D +K+ID Sbjct: 822 ARSKHEKVLKDWKKTGAVLPDVVKKAEKELQKVQDKKMKDIDQ 864 >gi|156083138|ref|XP_001609053.1| hypothetical protein [Babesia bovis T2Bo] gi|154796303|gb|EDO05485.1| conserved hypothetical protein [Babesia bovis] Length = 281 Score = 80.1 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 40/170 (23%), Positives = 66/170 (38%), Gaps = 4/170 (2%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSH--VPLNQVANVTVLEPRML 66 N+K R+ + L+ + L R +PS++D + VE G L VA + P L Sbjct: 106 NLKSRLKEAEEHLRYKISRLTLHRATPSLVDSLTVELPGEKKEKQLQYVARIISKGPYEL 165 Query: 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 V D + +V + + ++ + + +P TE V + K Sbjct: 166 QVLPLDIHHLDAVFVSLSTKLVDYKVSMQPDRISVVIPSMTELMIQQARSVVKETHNEVK 225 Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFF 176 VR IR D LK RK S+DM E ++ I + + +D Sbjct: 226 TRVRTIRLDFAKKLKGMRKG--LSDDMYFRQEKELDSIVKQSERVVDQIA 273 >gi|167463764|ref|ZP_02328853.1| ribosome recycling factor [Paenibacillus larvae subsp. larvae BRL-230010] Length = 62 Score = 80.1 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 1/63 (1%) Query: 124 KSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +K+++RNIRRD + +KK K+ + SED ++DIQK TD I +D K+KEI Sbjct: 1 DAKVAIRNIRRDSNESIKKMEKT-EISEDESRRHQDDIQKSTDKYIAEVDKVLAAKEKEI 59 Query: 184 MHF 186 M Sbjct: 60 MEV 62 >gi|205373431|ref|ZP_03226235.1| hypothetical protein Bcoam_09080 [Bacillus coahuilensis m4-4] Length = 62 Score = 78.9 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 30/48 (62%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQ 54 + K+RM I+ +++ ++R GR + S+LD + VE YG+ P+NQ Sbjct: 6 INTGKERMDKAIAAYSRELASIRAGRANASLLDGLSVEYYGAPTPINQ 53 >gi|119607930|gb|EAW87524.1| mitochondrial ribosome recycling factor, isoform CRA_d [Homo sapiens] Length = 273 Score = 78.1 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 36/69 (52%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 +I+L+ + + M I LK + R SP LD + V + LNQ++ +++ Sbjct: 154 EDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMK 213 Query: 62 EPRMLVVSV 70 P++++V++ Sbjct: 214 SPQLILVNM 222 >gi|116180868|ref|XP_001220283.1| hypothetical protein CHGG_01062 [Chaetomium globosum CBS 148.51] gi|88185359|gb|EAQ92827.1| hypothetical protein CHGG_01062 [Chaetomium globosum CBS 148.51] Length = 299 Score = 77.8 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 40/187 (21%), Positives = 75/187 (40%), Gaps = 17/187 (9%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKVEAYG---SHVPLNQVANVTV 60 D +++ +D+ LR+G R + ++ + V+ PL ++A V Sbjct: 111 FDFADLQTAFDRAEKHFSEDLKKLRSGGRFNAEVIGAIPVQTDKKNPQTFPLRELATVAP 170 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESN-LGLNPIVEGQVLRIPVPETTE----ERRLALV 115 L R + +++ V ++ + S+ P + P+ E T ER AL Sbjct: 171 LGGRRWSILAFEEGSVKAIVSAVQRSDEFNQQPQRSAEN---PL-ELTMTVEPERADALA 226 Query: 116 KVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSF 175 + A + ++ VR+ + KK R G D L++ +QK+ D +K I Sbjct: 227 RRAKEVCQAWRVRVRDEAHRRAELHKKWRGEGVVLSDDAHKLKDKLQKLQDERMKAI--- 283 Query: 176 FEEKKKE 182 K+KE Sbjct: 284 -LAKEKE 289 >gi|159163384|pdb|1WIH|A Chain A, Solution Structure Of Rsgi Ruh-021, A Domain Ii Of Ribosome Recycling Factor From Mouse Cdna Length = 84 Score = 76.6 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 1/78 (1%) Query: 31 GRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD-KEMVASVERGIHESNLG 89 G S LD + V V LNQ+ +++ P++++V++ E A+ + I ES + Sbjct: 1 GSSGSSGLDHITVVTADGKVALNQIGQISMKSPQVILVNMASFPECTAAAIKAIRESGMN 60 Query: 90 LNPIVEGQVLRIPVPETT 107 LNP VEG ++R+P+P+ T Sbjct: 61 LNPEVEGTLIRVPIPKVT 78 >gi|213407242|ref|XP_002174392.1| mitochondrial translation termination factor [Schizosaccharomyces japonicus yFS275] gi|212002439|gb|EEB08099.1| mitochondrial translation termination factor [Schizosaccharomyces japonicus yFS275] Length = 241 Score = 75.8 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 69/159 (43%), Gaps = 13/159 (8%) Query: 34 SPSMLDLVKVEAYGSH-VPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNP 92 + + L+ V V L +A ++ + ++L + + + V + + I SNL + P Sbjct: 81 NVNQLEHVMVSKPKQEEHLLKDIAAISRVSGKVLNIKPYSPQDVKYIMKAITSSNLRMQP 140 Query: 93 IV-EGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASE 151 ++ + +++ + ETT E AL K +++K+++R +R L + + S SE Sbjct: 141 VLKDSVTIQVRLQETTLETLKALAKQIKEQEDRTKVAIRLVRTSFQKKLARRKLSKVWSE 200 Query: 152 DMVASLENDIQK-----------ITDSTIKNIDSFFEEK 179 D +E D+Q I + +K + K Sbjct: 201 DECRKVEKDMQDTIQAQNGQLTTIIERYLKQLKEQSRNK 239 >gi|307568248|pdb|3LHP|S Chain S, Crystal Structure Of Hiv Epitope-Scaffold 4e10_d0_1isea_004_n 4e10 Fv Complex gi|307568249|pdb|3LHP|T Chain T, Crystal Structure Of Hiv Epitope-Scaffold 4e10_d0_1isea_004_n 4e10 Fv Complex Length = 123 Score = 75.8 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 41/76 (53%) Query: 106 TTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKIT 165 TEER +K+ AE+++++VRN+ RD D K + + ++ D+QK+T Sbjct: 43 PTEERIKDWLKIVRGEAEQARVAVRNVGRDANDKAAALGKDKEINWFDISQSLWDVQKLT 102 Query: 166 DSTIKNIDSFFEEKKK 181 D+ IK I++ + + Sbjct: 103 DAAIKKIEAALADMEA 118 >gi|119607931|gb|EAW87525.1| mitochondrial ribosome recycling factor, isoform CRA_e [Homo sapiens] gi|119607932|gb|EAW87526.1| mitochondrial ribosome recycling factor, isoform CRA_e [Homo sapiens] gi|158257050|dbj|BAF84498.1| unnamed protein product [Homo sapiens] gi|158259041|dbj|BAF85479.1| unnamed protein product [Homo sapiens] Length = 168 Score = 75.8 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 43/87 (49%), Gaps = 1/87 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 +I+L+ + + M I LK + R SP LD + V + LNQ++ +++ Sbjct: 80 EDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMK 139 Query: 62 EPRMLVVSVWD-KEMVASVERGIHESN 87 P++++V++ E + +++ + N Sbjct: 140 SPQLILVNMASFPETMKQIKQYFNGPN 166 >gi|119607933|gb|EAW87527.1| mitochondrial ribosome recycling factor, isoform CRA_f [Homo sapiens] Length = 176 Score = 75.1 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 36/69 (52%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 +I+L+ + + M I LK + R SP LD + V + LNQ++ +++ Sbjct: 80 EDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMK 139 Query: 62 EPRMLVVSV 70 P++++V++ Sbjct: 140 SPQLILVNM 148 >gi|55958146|emb|CAI14708.1| mitochondrial ribosome recycling factor [Homo sapiens] gi|221042068|dbj|BAH12711.1| unnamed protein product [Homo sapiens] gi|221045920|dbj|BAH14637.1| unnamed protein product [Homo sapiens] Length = 158 Score = 75.1 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 36/69 (52%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 +I+L+ + + M I LK + R SP LD + V + LNQ++ +++ Sbjct: 80 EDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMK 139 Query: 62 EPRMLVVSV 70 P++++V++ Sbjct: 140 SPQLILVNM 148 >gi|119607928|gb|EAW87522.1| mitochondrial ribosome recycling factor, isoform CRA_c [Homo sapiens] Length = 186 Score = 74.7 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 36/69 (52%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 +I+L+ + + M I LK + R SP LD + V + LNQ++ +++ Sbjct: 80 EDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMK 139 Query: 62 EPRMLVVSV 70 P++++V++ Sbjct: 140 SPQLILVNM 148 >gi|207111159|ref|ZP_03245321.1| ribosome recycling factor [Helicobacter pylori HPKX_438_CA4C1] Length = 63 Score = 74.3 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 35/63 (55%) Query: 99 LRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLE 158 +++ P T E+R + K A A EK+K++VRN R+D + +KK K + SED + Sbjct: 1 IKLFFPPMTTEQRKLIAKDAKAMGEKAKVAVRNTRQDANNKVKKLEKDKEISEDESKKAQ 60 Query: 159 NDI 161 I Sbjct: 61 EQI 63 >gi|323308800|gb|EGA62037.1| Rrf1p [Saccharomyces cerevisiae FostersO] gi|323337268|gb|EGA78521.1| Rrf1p [Saccharomyces cerevisiae Vin13] gi|323354795|gb|EGA86629.1| Rrf1p [Saccharomyces cerevisiae VL3] Length = 161 Score = 74.3 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 72/167 (43%), Gaps = 16/167 (9%) Query: 25 MMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIH 84 M ++ G +P + + + + ++ +A ++ L+++V+D + V +V G+ Sbjct: 1 MNEIKQGNFNPKVFNSLVFK---NNRKFTDIATTSLKGKNALLITVFDPKDVKTVISGVL 57 Query: 85 ESNLGLNPI---VEGQVLRIPVPETTEERRLALVKVAHAYAEKS-----KISVRNIRRDG 136 +NL L P L++ +P T E RL + K E+ K S+ IR Sbjct: 58 AANLNLTPERVPNNDLQLKVSLPPPTTESRLKVAKDLKRVFEEYKQSSLKDSLGTIRGSI 117 Query: 137 MDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 + K +K D V E D++K+ + + F++ +K I Sbjct: 118 LKEFKSFKKD-----DAVRKAERDLEKLHKDYVNKLHDQFQKVEKSI 159 >gi|55958145|emb|CAI14707.1| mitochondrial ribosome recycling factor [Homo sapiens] Length = 153 Score = 73.5 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 36/69 (52%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 +I+L+ + + M I LK + R SP LD + V + LNQ++ +++ Sbjct: 80 EDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMK 139 Query: 62 EPRMLVVSV 70 P++++V++ Sbjct: 140 SPQLILVNM 148 >gi|323348363|gb|EGA82611.1| Rrf1p [Saccharomyces cerevisiae Lalvin QA23] Length = 161 Score = 73.5 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 72/167 (43%), Gaps = 16/167 (9%) Query: 25 MMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIH 84 M ++ G +P + + + + ++ +A ++ L+++V+D + V +V G+ Sbjct: 1 MNEIKQGNFNPKVFNXLVFK---NNRKFTDIATTSLKGKNALLITVFDPKDVKTVISGVL 57 Query: 85 ESNLGLNPI---VEGQVLRIPVPETTEERRLALVKVAHAYAEKS-----KISVRNIRRDG 136 +NL L P L++ +P T E RL + K E+ K S+ IR Sbjct: 58 AANLNLTPERVPNNDLQLKVSLPPPTTESRLKVAKDLKRVFEEYKQSSLKDSLGTIRGSI 117 Query: 137 MDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 + K +K D V E D++K+ + + F++ +K I Sbjct: 118 LKEFKSFKKD-----DAVRKAERDLEKLHKDYVNKLHDQFQKVEKSI 159 >gi|68072191|ref|XP_678009.1| ribosome releasing factor [Plasmodium berghei strain ANKA] gi|56498332|emb|CAI00267.1| ribosome releasing factor, putative [Plasmodium berghei] Length = 178 Score = 73.1 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 74/167 (44%), Gaps = 3/167 (1%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 ++M +KK+ VS +M + KV+ +N + ++ E + +++ + Sbjct: 13 EKMNKVYEHIKKESYRFNLNNVSSAMFENEKVKINERIYTINHICHIKKKE-NLFIITPY 71 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 D V + + L ++ + + +P +E + + E+SKI++RN Sbjct: 72 DPYFVNFIYLHFTKEYSELKFYIKDKSICAVIPPLSEHLKNEIKNKIKDKIEESKITLRN 131 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 +R+ M+ L+K + +D+ +N IQ + D T K I+ F E Sbjct: 132 VRKKFMNKLEKIK--NYIGKDIYFKQKNHIQSLHDQTKKKIEKIFNE 176 >gi|55958150|emb|CAI14712.1| mitochondrial ribosome recycling factor [Homo sapiens] Length = 124 Score = 72.0 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 43/87 (49%), Gaps = 1/87 (1%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 +I+L+ + + M I LK + R SP LD + V + LNQ++ +++ Sbjct: 36 EDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMK 95 Query: 62 EPRMLVVSVWD-KEMVASVERGIHESN 87 P++++V++ E + +++ + N Sbjct: 96 SPQLILVNMASFPETMKQIKQYFNGPN 122 >gi|82593721|ref|XP_725122.1| ribosome releasing factor [Plasmodium yoelii yoelii str. 17XNL] gi|23480010|gb|EAA16687.1| ribosome releasing factor-related [Plasmodium yoelii yoelii] Length = 413 Score = 71.6 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 76/167 (45%), Gaps = 3/167 (1%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 ++M +KK+ VS +M + +V+ +N + ++ E + +++ + Sbjct: 248 EKMNKIYDHIKKESYRFNLNNVSSAMFESERVKINEQIYTINHICHIKKKE-NLFIITPY 306 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 D V + + L ++ + + + +P +E + + E+SKI++RN Sbjct: 307 DPYFVNFIYIHFTKEYNELKFYIKDKSVYVVIPPLSEHLKNEIKNKIKDKIEESKITLRN 366 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 +R+ M+ L+K + +D+ +N IQ + D T KNI+ F E Sbjct: 367 VRKKFMNKLEKIK--NYIGKDIYFKQKNHIQSLHDQTKKNIEKIFNE 411 >gi|324522561|gb|ADY48080.1| Ribosome-recycling factor [Ascaris suum] Length = 267 Score = 68.9 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 33/151 (21%), Positives = 63/151 (41%), Gaps = 7/151 (4%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAY-GSHVPLNQVANVTVLEPRM 65 +Q M + L ++ + +V + + V+ G +N++ VT+ P+M Sbjct: 87 VQGALKEMKHLEAILNDELAKHFSMQVDLRTYEEIVVKLDNGEEHKMNRLGRVTLKSPQM 146 Query: 66 LVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAH-AYAE 123 ++++ D + + + + +SNL +NP EG L +PVP+ T ERR L A Sbjct: 147 VMINFGDNPTAIKAAKLALQKSNLNVNPQQEGVTLYVPVPKMTRERREYLASTAKAKMFN 206 Query: 124 KSKISVRNIRRDGMDHLKKSRKSGKASEDMV 154 K ++ + K S+D Sbjct: 207 DYKEALNEVYARYNKKSSNELK----SQDDA 233 >gi|322695925|gb|EFY87725.1| ribosomal recycling factor precursor, putative [Metarhizium acridum CQMa 102] Length = 290 Score = 68.9 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 38/162 (23%), Positives = 65/162 (40%), Gaps = 7/162 (4%) Query: 19 SFLKKDMMTLR-TGRVSPSMLDLVKV-----EAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 ++ K + T+ GR +PS L + + S PL ++A V R + + V D Sbjct: 116 TYYKSALQTILHGGRFNPSALGGLPIAVKSASGEASTFPLGELAQVVPRTNRTISLLVND 175 Query: 73 KEMVASVERGIHES-NLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 +E + + + S P + + ER+ LV+ + VR Sbjct: 176 REYIKPIMSAVQSSREFNQQPQRSDDNDLELLLKVELERKEELVRRIRETTHAWRDKVRQ 235 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNID 173 R LK +K G D+V E ++QK+ D+ +K ID Sbjct: 236 ARTRHDKVLKGWQKDGTVLRDVVRRAERELQKLQDAKMKEID 277 >gi|154299907|ref|XP_001550371.1| predicted protein [Botryotinia fuckeliana B05.10] gi|150857124|gb|EDN32316.1| predicted protein [Botryotinia fuckeliana B05.10] Length = 119 Score = 68.1 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 3/109 (2%) Query: 76 VASVERGIHESNLGLNPIVEGQ---VLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + + I S L L P + Q L IP+P T+E R A ++ A E + VRN Sbjct: 6 IKPILSTIQSSTLSLQPTPDPQNPLALNIPIPPPTKESRDAALQAASKAGEIASNGVRNA 65 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 R L+ D +++K+ + + E +K Sbjct: 66 RGAMQKKLRAMEVKKTVRPDDSKKAHKEMEKVVEKGNGEVKKIVEAARK 114 >gi|156093956|ref|XP_001613016.1| ribosome releasing factor [Plasmodium vivax SaI-1] gi|148801890|gb|EDL43289.1| ribosome releasing factor, putative [Plasmodium vivax] Length = 422 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 76/171 (44%), Gaps = 3/171 (1%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++M S++KK+ +S ++ + KV+ + + ++++ E + + Sbjct: 253 KTCAEKMESVYSYIKKESYRFNLNSISNTLFENEKVKINDQLMTIKHMSHIRKKE-NLFI 311 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++ +D V + + L V+ + L VP +E + + E SK Sbjct: 312 ITPYDPYYVNFIYNHFVKEYKELKFYVKDRSLYAVVPPLSENLKNEIKIKIKEKVEDSKG 371 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 ++RN+R+ + L+K R G+ +D+ N IQ + D T K I++ E Sbjct: 372 TLRNVRKQMLAKLEKLR--GRIGKDIYFFQRNHIQSLHDQTRKRIEALLSE 420 >gi|124801048|ref|XP_001349596.1| apicoplast ribosomal releasing factor precursor, putative [Plasmodium falciparum 3D7] gi|3845171|gb|AAC71867.1| apicoplast ribosomal releasing factor precursor, putative [Plasmodium falciparum 3D7] Length = 498 Score = 66.2 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 73/167 (43%), Gaps = 3/167 (1%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVW 71 ++M FLKK+ VS M + KV+ + + ++ E + ++ + Sbjct: 333 EKMNKVYEFLKKESYRFNLNNVSNDMFENEKVKINERIYTVKHICHIKKKE-NLFTITPY 391 Query: 72 DKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 D V + + + L V+ + L +P +E + + E SK+++R Sbjct: 392 DPYFVNFLYQHFIKEFDELKFYVKDKSLYAIIPPISENLKNEIKMKIKRKIEDSKVTLRT 451 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 +R+ MD L+K + K +D+ +N IQ I D T KNI+ F + Sbjct: 452 VRKQMMDKLEKFK--NKIGKDIYFKQKNYIQSIHDQTKKNIEKLFAD 496 >gi|308485188|ref|XP_003104793.1| hypothetical protein CRE_23987 [Caenorhabditis remanei] gi|308257491|gb|EFP01444.1| hypothetical protein CRE_23987 [Caenorhabditis remanei] Length = 238 Score = 64.3 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 66/157 (42%), Gaps = 14/157 (8%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAY-GSHVPLNQVANVTVLEPRM 65 +QN + + L +++ + +V + + V+ G PL+ VA VT+ P M Sbjct: 57 VQNALKEIQRVETLLVEELTRHFSLKVDIRQYEDIMVKLENGKEKPLSMVARVTLKSPLM 116 Query: 66 LVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 ++++ D + + + I +S L + P EG VL + VP ++ERR A Sbjct: 117 VMMNFQDNPTAIKTAKLAIQKSTLNVTPQQEGAVLYVNVPPMSKERRE-------KMASD 169 Query: 125 SKISVRNIRRDGMDHL-----KKSRKSGKASEDMVAS 156 +K + N + ++ + KKS D Sbjct: 170 AKGRILNEYKKAINEIYSTSDKKSSAEFSTRPDEAKK 206 >gi|193203211|ref|NP_491262.2| hypothetical protein T20F5.3 [Caenorhabditis elegans] gi|152031757|sp|P91478|RRFM_CAEEL RecName: Full=Probable ribosome-recycling factor, mitochondrial; Short=RRF; AltName: Full=Ribosome-releasing factor, mitochondrial; Flags: Precursor gi|125490470|gb|AAB37664.2| Hypothetical protein T20F5.3 [Caenorhabditis elegans] Length = 238 Score = 64.3 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 64/157 (40%), Gaps = 14/157 (8%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAY-GSHVPLNQVANVTVLEPRM 65 +Q + L +++ + +V + V V+ G PL+ +A VT+ P M Sbjct: 57 VQETIKEIQRVEGLLVEELTRHFSLKVDIRQYEDVMVKLENGKDKPLSMIARVTLKSPLM 116 Query: 66 LVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 ++++ D + + + I +S L + P EG VL + VP ++ERR A Sbjct: 117 IMINFQDNPSAIKAAKLAIQKSTLNVTPQQEGAVLYVNVPPMSKERRE-------KMASD 169 Query: 125 SKISVRNIRRDGMDHL-----KKSRKSGKASEDMVAS 156 +K + N + ++ + KKS D Sbjct: 170 AKGRILNEYKKAINEIYSKSDKKSSNEFSTRPDEAKK 206 >gi|84994562|ref|XP_952003.1| hypothetical protein [Theileria annulata] gi|65302164|emb|CAI74271.1| hypothetical protein TA14705 [Theileria annulata] Length = 254 Score = 63.5 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 20/148 (13%), Positives = 54/148 (36%), Gaps = 2/148 (1%) Query: 9 NIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVV 68 + ++ +K ++ + + +PS++ + ++ L +A++ L V Sbjct: 105 ECETKLKSIEDQVKSELAKICEHKAAPSLIGHILIQTETGRKQLRYLASIVNKGNFELEV 164 Query: 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 + + E + + + G N + + I +P+ + + + Sbjct: 165 TPFSMENLYGIFSTLSNELTGYNVKLMPSFVSIVIPQMGSDMKKKSQENVKRIMNMGMEQ 224 Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVAS 156 +R R++ M LK S+DM+ Sbjct: 225 IRLARQNSMKSLKNME--SGLSQDMLFK 250 >gi|289617036|emb|CBI56263.1| unnamed protein product [Sordaria macrospora] Length = 313 Score = 63.1 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 71/192 (36%), Gaps = 22/192 (11%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKVEAYGSHV----PLNQVANV- 58 DL ++ + T RTG R S + + + PL +A V Sbjct: 123 YDLSDLTYAFDRADKHYLDALKTFRTGSRFSADSIGALPIFPDKKDTSLTYPLRDLATVA 182 Query: 59 -TVLEPRMLVVSVWDKEMVASVERGIHE-SNLGLNPIVEGQV---LRIPVPETTEERRLA 113 R + +D+ V + + + + P + L I V ER Sbjct: 183 QVSGSGRKWSILCFDESSVKPIMSAVQKSPDFNQQPQRSEENPLELTITVEP---ERAED 239 Query: 114 LVKVAHAYAEKSKISVR--NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKN 171 L K ++ + +R + +R+ + KK + G ED V SL+ +QK+ D +K Sbjct: 240 LQKRVKELCQQWRDKLRAESHKREALH--KKWKGQGSILEDDVKSLKTKVQKLQDERMKG 297 Query: 172 IDSFFEEKKKEI 183 + ++KE+ Sbjct: 298 V----AVREKEV 305 >gi|221053778|ref|XP_002258263.1| ribosome recycling factor [Plasmodium knowlesi strain H] gi|193808096|emb|CAQ38800.1| ribosome recycling factor, putative [Plasmodium knowlesi strain H] Length = 282 Score = 62.0 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 61/149 (40%), Gaps = 8/149 (5%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 +D + + + + +K M + +S + + + + L+ +A V V + Sbjct: 105 LDYEPYDTKTQEIVKGFEKKMKKIYDNNLSVDYFNNIVISKEKQNYNLSDLAQVVVKSSK 164 Query: 65 MLVVSVWDKEMVASVERGIHESNL-----GLNPIVEGQVLRIPVPETTEERRLALVKVAH 119 ++ + +++ ++ I+ L +GQ + + +P TE+ +L K A Sbjct: 165 VIC---FFPYIISDAQKIIYHLKLKDNTWNPTISNDGQHIFLHIPPLTEDVKLKKRKEAK 221 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGK 148 EK K +RN+R D + K + + Sbjct: 222 ELLEKMKNDLRNLRHRMRDDIAKLLQGEE 250 >gi|322712078|gb|EFZ03651.1| ribosomal recycling factor, putative [Metarhizium anisopliae ARSEF 23] Length = 261 Score = 60.8 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 63/162 (38%), Gaps = 7/162 (4%) Query: 19 SFLKKDMMTLR-TGRVSPSMLDLVKVEA-----YGSHVPLNQVANVTVLEPRMLVVSVWD 72 + K + T+ GR +PS L + + S PL ++A V R + + V D Sbjct: 87 THYKSALQTILHGGRFNPSALGALPITIKSASGEASTFPLRELAQVVPRTNRTISLLVND 146 Query: 73 KEMVASVERGIHES-NLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 +E + + + S P + ERR LV+ + VR Sbjct: 147 REYIKPIMSAVQSSREFNQQPQRSDDNDLELLLRVELERREELVRRVKETTHAWRDKVRQ 206 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNID 173 R LK +K G +D+V E ++QK+ D +K ID Sbjct: 207 ARTRHDKVLKGWQKDGTVLKDVVRRAERELQKLQDGKMKEID 248 >gi|221053149|ref|XP_002257949.1| ribosome releasing factor [Plasmodium knowlesi strain H] gi|193807781|emb|CAQ38486.1| ribosome releasing factor, putative [Plasmodium knowlesi strain H] Length = 410 Score = 60.0 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 75/171 (43%), Gaps = 3/171 (1%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLV 67 + ++M +++KK+ +S +M + K++ + + ++++ E + + Sbjct: 241 KTCAEKMESVYNYIKKESYRFNLSSISNTMFENEKIKINDQILIIKHISHIKKKE-NLFM 299 Query: 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 ++ +D V + + L V+ + + VP +E + + E SK Sbjct: 300 ITPFDPYYVNFIYNHFVKEYKELKFYVKDRSVYAVVPPLSENLKNEIRIKIKEKIEDSKA 359 Query: 128 SVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 ++RN+R+ + L K R G+ +D+ N IQ + D T K I++ E Sbjct: 360 TLRNVRKQMLTKLDKMR--GRIGKDIYFMQRNHIQSLHDQTRKRIEAILNE 408 >gi|19112234|ref|NP_595442.1| mitochondrial translation termination factor [Schizosaccharomyces pombe 972h-] gi|74582545|sp|O74734|RRF1_SCHPO RecName: Full=Putative ribosomal recycling factor, mitochondrial; Flags: Precursor gi|3738147|emb|CAA21248.1| mitochondrial translation termination factor [Schizosaccharomyces pombe] Length = 244 Score = 60.0 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 58/135 (42%), Gaps = 4/135 (2%) Query: 48 SHVP---LNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPI-VEGQVLRIPV 103 + P L ++A V+ + +++ ++ + ++ + I +S + + + Sbjct: 104 APTPSRLLREIAAVSQKGSQQIIIRPFEDVDIKNILKAIEDSRYPFVANKLNASTIEVKP 163 Query: 104 PETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQK 163 TT E R L KV YA+ S+ + +R + + K++KS + D E ++Q Sbjct: 164 QRTTLESRQQLAKVLEGYAKDSREQLSAMRTELKKEIAKNKKSKAWTSDDCYKAEAEMQT 223 Query: 164 ITDSTIKNIDSFFEE 178 + I +DS + Sbjct: 224 AFKNAINLLDSGLKS 238 >gi|294953473|ref|XP_002787781.1| Ribosome recycling factor, putative [Perkinsus marinus ATCC 50983] gi|239902805|gb|EER19577.1| Ribosome recycling factor, putative [Perkinsus marinus ATCC 50983] Length = 193 Score = 59.3 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 73/183 (39%), Gaps = 8/183 (4%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 M+ L+ + + + +K + ++ + SP + + V + PL ++ +++ Sbjct: 15 MDHAKMLKEQTQALDEEVRDMKAALQEVQMEQASPELFRSITV----AEKPLLNISQMSI 70 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 L + SV+D + + ++ I +G + + +P+ T E R + Sbjct: 71 LNATTVNFSVFDDGLAGACQKAIQLRGKNWTVNKDGNKISVVLPKVTREVRNECLNRCKG 130 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 +K + ++ +IR ++ ++ S + + A I KI + EK+ Sbjct: 131 ILKKYQRNINSIRATMLEENRRMMPSTEMEKTEAAK----IDKIYKQRADQLVVLLREKE 186 Query: 181 KEI 183 + + Sbjct: 187 QAL 189 >gi|23335168|ref|ZP_00120406.1| COG0233: Ribosome recycling factor [Bifidobacterium longum DJO10A] Length = 58 Score = 58.5 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 23/58 (39%), Positives = 32/58 (55%) Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +RNIRR + + K+ K G+ ED L D+ K+T S ID+ E K+KEIM Sbjct: 1 MRNIRRKTKETIDKAVKDGEMGEDEGDRLLKDLDKVTKSVTDEIDTLLETKQKEIMEV 58 >gi|268560952|ref|XP_002646329.1| Hypothetical protein CBG12038 [Caenorhabditis briggsae] gi|187029873|emb|CAP31083.1| hypothetical protein CBG_12038 [Caenorhabditis briggsae AF16] Length = 198 Score = 58.1 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 14/125 (11%) Query: 39 DLVKVEAY-GSHVPLNQVANVTVLEPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEG 96 + V V+ G PL+ VA VT+ P +++++ D + + + I +S L + P EG Sbjct: 49 EDVMVKLDNGKEKPLSLVARVTLKSPLIVMLNFQDNPSAIKAAKLAIQKSTLNVTPQQEG 108 Query: 97 QVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHL-----KKSRKSGKASE 151 VL + VP T++ERR + +K + N + ++ + KKS + Sbjct: 109 AVLYVNVPPTSKERREKMAT-------DAKGRILNEYKKAINEIYSTCDKKSSAEFSSRP 161 Query: 152 DMVAS 156 D Sbjct: 162 DEAKK 166 >gi|156098165|ref|XP_001615115.1| ribosome recycling factor [Plasmodium vivax SaI-1] gi|148803989|gb|EDL45388.1| ribosome recycling factor, putative [Plasmodium vivax] Length = 274 Score = 57.3 bits (138), Expect = 8e-07, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 58/146 (39%), Gaps = 2/146 (1%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPR 64 +D ++ + + + +K M + +S + + + L+ +A V V R Sbjct: 99 VDYESYDVKAQEILKAFEKKMKKIYENNLSVDFFNSMVISKEKETFSLSDLAQVVVKSSR 158 Query: 65 MLVVSVWDKEMVASVERGIHESNLGLNP--IVEGQVLRIPVPETTEERRLALVKVAHAYA 122 ++ + + + + NP +GQ + + +P TE+ +L K A Sbjct: 159 VIYFLPYMASDAQRIIYHLKMKDNTWNPTMSNDGQQILLHIPPLTEDVKLKKRKEAKDLL 218 Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGK 148 EK K +RN+R D + + + + Sbjct: 219 EKIKNDLRNLRHRVRDDIARLLQGEE 244 >gi|70944426|ref|XP_742145.1| ribosome releasing factor [Plasmodium chabaudi chabaudi] gi|56520960|emb|CAH88742.1| ribosome releasing factor, putative [Plasmodium chabaudi chabaudi] Length = 141 Score = 57.3 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 65/142 (45%), Gaps = 3/142 (2%) Query: 37 MLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEG 96 M + KV+ +N + ++ E + +++ +D V + + + L ++ Sbjct: 1 MFENEKVKINEQIYTINHICHIKKKE-NLFIITPYDPYFVNFIYQHFIKEYNELKFYIKD 59 Query: 97 QVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVAS 156 + + +P +E + + E+SKI++RN+R+ M L+K + +D+ Sbjct: 60 KSVYAVIPPLSEHLKNEIKNKIKDKIEESKITLRNVRKKFMTKLEKIK--NYIGKDIYFK 117 Query: 157 LENDIQKITDSTIKNIDSFFEE 178 +N IQ + D T K+I+ F E Sbjct: 118 QKNHIQSLHDQTKKSIEKIFNE 139 >gi|171687201|ref|XP_001908541.1| hypothetical protein [Podospora anserina S mat+] gi|170943562|emb|CAP69214.1| unnamed protein product [Podospora anserina S mat+] Length = 293 Score = 57.0 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 69/189 (36%), Gaps = 15/189 (7%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLR--TGRVSPSMLDLVKVEAYGSHV---PLNQVA 56 +L + T S + LR TGR + + + V L ++A Sbjct: 104 EDPFNLDPLIALFQKTESHYTSQLALLRSPTGRFNVESIGAIPVSLDKKSTVTYRLQELA 163 Query: 57 NVTVLEPRMLVVSVWDKEMVASVERGIHE-SNLGLNPI-VEGQVLRIPVPETTEERRLAL 114 V L R + +++ V + + + + P E L + + E+ L Sbjct: 164 TVAPLGGRRWSILAFEEASVKPIISAVLKSPDFNQQPQRNEENPLELTM-TVEPEKVDDL 222 Query: 115 VKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDS 174 VK A + + +R+ + H +K+ +D + ++ ++K+ D +K Sbjct: 223 VKRAKDLCTEWRNKLRD---ETHKHETHVKKNKSLLKDDLFKIKEALKKLQDERMK---- 275 Query: 175 FFEEKKKEI 183 K+KE+ Sbjct: 276 VVANKEKEV 284 >gi|218672183|ref|ZP_03521852.1| ribosome recycling factor [Rhizobium etli GR56] Length = 41 Score = 56.6 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 18/41 (43%), Positives = 28/41 (68%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLV 41 M++ ID++ +K RM +S K D+ +LRTGR S ++LD V Sbjct: 1 MSEGIDIKELKRRMDGAVSAFKSDIASLRTGRASANILDPV 41 >gi|323333350|gb|EGA74747.1| Rrf1p [Saccharomyces cerevisiae AWRI796] Length = 127 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 56/129 (43%), Gaps = 11/129 (8%) Query: 25 MMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIH 84 M ++ G +P + + + + ++ +A ++ L+++V+D + V +V G+ Sbjct: 1 MNEIKQGNFNPKVFNSLVFK---NNRKFTDIATTSLKGKNALLITVFDPKDVKTVISGVL 57 Query: 85 ESNLGLNPI---VEGQVLRIPVPETTEERRLALVKVAHAYAEKS-----KISVRNIRRDG 136 +NL L P L++ +P T E RL + K E+ K S+ IR Sbjct: 58 AANLNLTPERVPNNDLQLKVSLPPPTTESRLKVAKDLKRVFEEYKQSSLKDSLGTIRGSI 117 Query: 137 MDHLKKSRK 145 + K +K Sbjct: 118 LKEFKSFKK 126 >gi|170585046|ref|XP_001897299.1| ribosome recycling factor family protein [Brugia malayi] gi|158595296|gb|EDP33861.1| ribosome recycling factor family protein [Brugia malayi] Length = 269 Score = 55.4 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 46/121 (38%), Gaps = 3/121 (2%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEA-YGSHVPLNQVANVTVLEPRMLVVSV 70 M +++ + ++ + V+ G LN + + ++ P ++ V Sbjct: 98 KEMKSLEDIFMQELTKSLSLKIDLRTYEDFVVKIEDGKQYKLNTLGRIKLVNPLLISVDF 157 Query: 71 WD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA-HAYAEKSKIS 128 D + I +S L + P EG +L I +P T ERR + VA K + Sbjct: 158 SDNPSAIKPARLAIEQSKLNVTPRQEGAILYISLPRITRERREHMANVASKKLLNDYKKA 217 Query: 129 V 129 + Sbjct: 218 L 218 >gi|82705419|ref|XP_726962.1| ribosome recycling factor [Plasmodium yoelii yoelii str. 17XNL] gi|23482586|gb|EAA18527.1| ribosome recycling factor [Plasmodium yoelii yoelii] Length = 266 Score = 55.4 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 68/183 (37%), Gaps = 8/183 (4%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 N +D ++ ++ + I M L ++ + + V L+ ++ V + Sbjct: 87 NNNVDYKSYDIKIEEIIKNFDIKMKKLLENTLTVDFFNNIVVTKDKKKYKLSDLSQVVIK 146 Query: 62 EPRMLVVSVWDKEMVASVERGIHESNLGLNPI--VEGQVLRIPVPETTEERRLALVKVAH 119 + + + + + + + NP +GQ + + +P T E +L K A Sbjct: 147 SSKTIFFYPYIISDIQKIIHSLKIKDNTWNPTTPNDGQYILLHIPPLTNEIKLKKKKEAK 206 Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLEN-DIQKITDSTIKNIDSFFEE 178 EK K +R+IR D + D E + + +KNI+S +E+ Sbjct: 207 DILEKVKNDIRSIRHKIRDFI-----GKNIEGDEWKIEEKNKLDNYIKNKVKNIESVYEK 261 Query: 179 KKK 181 K Sbjct: 262 YTK 264 >gi|312076405|ref|XP_003140846.1| ribosome recycling factor family protein [Loa loa] gi|307763995|gb|EFO23229.1| ribosome recycling factor family protein [Loa loa] Length = 269 Score = 54.3 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 3/121 (2%) Query: 12 DRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEA-YGSHVPLNQVANVTVLEPRMLVVSV 70 M +++ + + + V+ G LN + + ++ P ++ V Sbjct: 98 KEMKSLEDIFVQELTKSLSLKADLRTYEDFVVKTEDGKQYKLNTLGRIKLVNPLLISVDF 157 Query: 71 WD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVA-HAYAEKSKIS 128 D ++ S I +S L + P EG VL I +P T ERR + VA + K + Sbjct: 158 TDNPAVIKSARLAIEQSKLNVTPRQEGAVLYISLPRITRERRENVANVASKKLLNEYKKA 217 Query: 129 V 129 + Sbjct: 218 L 218 >gi|85116368|ref|XP_965041.1| hypothetical protein NCU07494 [Neurospora crassa OR74A] gi|28926842|gb|EAA35805.1| predicted protein [Neurospora crassa OR74A] Length = 317 Score = 54.3 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 70/192 (36%), Gaps = 22/192 (11%) Query: 5 IDLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKVEAYGSHV----PLNQVANV- 58 DL ++ + T R+G R S + + + PL +A V Sbjct: 127 YDLSDLTYAFDRADKHYLDALKTFRSGSRFSADSIGSLPIFPDKKDTSLSYPLRDLATVA 186 Query: 59 -TVLEPRMLVVSVWDKEMVASVERGIHE-SNLGLNPIVEGQV---LRIPVPETTEERRLA 113 R + +D+ V + + + + P + L I V ER Sbjct: 187 QVSGSGRKWSILCFDESSVKPIMSAVQKSPDFNQQPQRSEENPLELTITVEP---ERAED 243 Query: 114 LVKVAHAYAEKSKISVR--NIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKN 171 L K + + +R +R+ + KK ++ K +D V +L+ +QK+ D ++ Sbjct: 244 LQKRVKELCQLWREKLRAETHKREAVH--KKWKQQEKILDDDVKALKTKVQKLQDERMRG 301 Query: 172 IDSFFEEKKKEI 183 + ++KE+ Sbjct: 302 V----AVREKEV 309 >gi|310790056|gb|EFQ25589.1| ribosomal recycling factor [Glomerella graminicola M1.001] Length = 297 Score = 53.1 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 31/190 (16%), Positives = 78/190 (41%), Gaps = 12/190 (6%) Query: 3 QVIDLQNIKDRMGDTISFLKKDMMTLRTG-RVSPSMLDLVKVE-AYGSHV--PLNQVANV 58 ++ ++ R+ + + + L++G R SP + + V+ + PL ++A + Sbjct: 109 DPLNFADVASRLASLAAHHTEVLKLLQSGDRFSPDAIGALTVQPSRKDPTTYPLRELAEI 168 Query: 59 TV-LEPRMLVVSVWDKEMVASVERGIHE-SNLGLNPIVEGQV---LRIPVPETTEERRLA 113 R + + + +K+ V V + + P + L + + T ++ Sbjct: 169 VPRPGGRTVSLLLHEKDYVKPVMAAVQASPDFNQQPQRDPDNELELVLKIEATNKDV--- 225 Query: 114 LVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNID 173 +V+ A A+ + +R + K +K D+ + ++QK+ D +K +D Sbjct: 226 VVRRAKDAAQAWREKMRTVTEKRKKLHAKWQKDKAIVPDLKKRADKELQKLQDKEMKVVD 285 Query: 174 SFFEEKKKEI 183 + ++ K+I Sbjct: 286 AAEQQAVKKI 295 >gi|169836592|ref|ZP_02869780.1| Ribosome Recycling Factor (RRF) [candidate division TM7 single-cell isolate TM7a] Length = 38 Score = 52.3 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 14/33 (42%), Positives = 21/33 (63%) Query: 49 HVPLNQVANVTVLEPRMLVVSVWDKEMVASVER 81 PLNQV V+ E R+LV+ WDK ++ +E+ Sbjct: 1 PTPLNQVGTVSAPEARLLVIDPWDKSLIPVIEK 33 >gi|169827157|ref|YP_001697315.1| hypothetical protein Bsph_1587 [Lysinibacillus sphaericus C3-41] gi|168991645|gb|ACA39185.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 44 Score = 51.9 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 26/44 (59%) Query: 143 SRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +K + +ED + +DIQK+TD I +D ++K+KEI+ Sbjct: 1 MKKLAQITEDDLRGYGDDIQKLTDEFIVKVDQVTKDKEKEILEV 44 >gi|326433736|gb|EGD79306.1| hypothetical protein PTSG_09722 [Salpingoeca sp. ATCC 50818] Length = 76 Score = 51.6 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 4/78 (5%) Query: 106 TTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKIT 165 T E + L K+A EK K RNIR + LKKS A++D +E IQ+ Sbjct: 1 MTTEYKSKLQKLAKDILEKYKHQARNIRNKYVAQLKKS----DATKDDKRHIETYIQQCM 56 Query: 166 DSTIKNIDSFFEEKKKEI 183 D ++ +D+ +E K K + Sbjct: 57 DGHLRTMDAAYEAKHKAL 74 >gi|157872171|ref|XP_001684634.1| hypothetical protein [Leishmania major strain Friedlin] gi|68127704|emb|CAJ05884.1| conserved hypothetical protein [Leishmania major strain Friedlin] Length = 211 Score = 50.4 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 57/147 (38%), Gaps = 12/147 (8%) Query: 38 LDLVKVEAYGSHVPL-NQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEG 96 L+L++VE G H L +VA V + ++ ++ + + + L EG Sbjct: 55 LELLEVEVAGGHTVLLVKVAQVVKTGTTTIEITPNSASFGNAILQRVSRFDSALQVSKEG 114 Query: 97 QVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVAS 156 +R+ +P T RR V + V+ R + L+ + Sbjct: 115 TKIRVVIPPITTARRDRTVAEVSNLISTFRQRVKQSRTKAVKVLQDAGLDDGV------- 167 Query: 157 LENDIQKITDSTIKNIDSFFEEKKKEI 183 + ++ + DST ++F EEK E+ Sbjct: 168 -QQELTALVDST---ANAFVEEKAAEL 190 >gi|281200592|gb|EFA74810.1| hypothetical protein PPL_11843 [Polysphondylium pallidum PN500] Length = 206 Score = 48.9 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 23/45 (51%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHV 50 DL +K T+ FL++ +R GR P +LDL+ VE + Sbjct: 159 DLNTMKSSCDATVDFLRRGFGNIRCGRTGPELLDLITVETPNGPM 203 >gi|71408434|ref|XP_806621.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70870420|gb|EAN84770.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 281 Score = 48.1 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 24/170 (14%), Positives = 54/170 (31%), Gaps = 27/170 (15%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 M + L+ D+ G V L +VA V + + + Sbjct: 122 NMAKCLELLEADVGG-------------------GRKVLLTKVAQVVKTNNSTIEIVPQN 162 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + + + + + L E Q +++ +P T RR V+ H K +++ Sbjct: 163 ASFASPILQRVTRFDGTLQVTKEQQKIKVVMPPVTTARRDKAVQEIHQVISLFKQKTKHV 222 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQ----KITDSTIKNIDSFFEE 178 R + L+ E+ + L + T+ + ++ + Sbjct: 223 RTNASKALQ----DASIEENALRELNAQLDTTVNAFTEEKVAELEQLAAD 268 >gi|322500990|emb|CBZ36067.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 211 Score = 47.7 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 59/147 (40%), Gaps = 12/147 (8%) Query: 38 LDLVKVEAYGSHVPL-NQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEG 96 L+L++VE G H L +VA V + ++ ++ + + + L EG Sbjct: 55 LELLEVEVAGGHTVLLVKVAQVVKTSTTTIEITPNSASFGNTILQRVSRFDSALQVSKEG 114 Query: 97 QVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVAS 156 +R+ +P T RR V + + V+ R + L+ + + Sbjct: 115 TKIRVVIPPITTARRDKTVAEVNNLISTFRQRVKQSRTKAVKVLQDAGLADGV------- 167 Query: 157 LENDIQKITDSTIKNIDSFFEEKKKEI 183 + ++ + DST ++F EEK E+ Sbjct: 168 -QQELTALVDST---ANAFVEEKAAEL 190 >gi|71400760|ref|XP_803153.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70865846|gb|EAN81707.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 281 Score = 47.7 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 24/170 (14%), Positives = 54/170 (31%), Gaps = 27/170 (15%) Query: 13 RMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 M + L+ D+ G V L +VA V + + + Sbjct: 122 NMAKCLELLEADVGG-------------------GRKVLLTKVAQVVKTSNSTIEIVPQN 162 Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + + + + + L E Q +++ +P T RR V+ H K +++ Sbjct: 163 ASFASPILQRVTRFDGTLQVTKEQQKIKVVMPPVTTARRDKAVQEIHQVISLFKQKTKHV 222 Query: 133 RRDGMDHLKKSRKSGKASEDMVASLENDIQ----KITDSTIKNIDSFFEE 178 R + L+ E+ + L + T+ + ++ + Sbjct: 223 RTNASKALQ----DASIEENALRELNAQLDTAVNAFTEEKVAELEQLAAD 268 >gi|146093560|ref|XP_001466891.1| hypothetical protein [Leishmania infantum JPCM5] gi|134071255|emb|CAM69940.1| conserved hypothetical protein [Leishmania infantum JPCM5] Length = 211 Score = 47.7 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 59/147 (40%), Gaps = 12/147 (8%) Query: 38 LDLVKVEAYGSHVPL-NQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEG 96 L+L++VE G H L +VA V + ++ ++ + + + L EG Sbjct: 55 LELLEVEVAGGHTVLLVKVAQVVKTGTTTIEITPNSASFGNTILQRVSRFDSALQVSKEG 114 Query: 97 QVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVAS 156 +R+ +P T RR V + + V+ R + L+ + + Sbjct: 115 TKIRVVIPPITTARRDKTVAEVNNLISTFRQRVKQSRTKAVKVLQDAGLADGV------- 167 Query: 157 LENDIQKITDSTIKNIDSFFEEKKKEI 183 + ++ + DST ++F EEK E+ Sbjct: 168 -QQELTALVDST---ANAFVEEKAAEL 190 >gi|261328700|emb|CBH11678.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972] Length = 342 Score = 46.9 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 52/156 (33%), Gaps = 16/156 (10%) Query: 32 RVSPSM---------LDLVKVEAYGS-HVPLNQVANVTVLEPRMLVVSVWDKEMVASVER 81 R + S L+ + V+ G V L +VA V + V + + + + Sbjct: 173 RANVSAMKVLNMAKCLEQLDVDVGGGRKVLLTKVAQVLKTGAATMEVVPQNVSFASPILQ 232 Query: 82 GIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLK 141 + + L E Q ++I +P T RR V+ K V+ +R L+ Sbjct: 233 RVTRFDGTLQVSKEQQKIKITMPPITTARRQKAVEEIQLVVSSFKNKVKQVRTQASRALQ 292 Query: 142 KSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFE 177 E L + + S ++ D E Sbjct: 293 ----ESGIDETASRELHQQLDECVHSFVE--DKVTE 322 >gi|72390025|ref|XP_845307.1| hypothetical protein [Trypanosoma brucei TREU927] gi|62359269|gb|AAX79711.1| hypothetical protein, conserved [Trypanosoma brucei] gi|70801842|gb|AAZ11748.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 342 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 52/156 (33%), Gaps = 16/156 (10%) Query: 32 RVSPSM---------LDLVKVEAYGS-HVPLNQVANVTVLEPRMLVVSVWDKEMVASVER 81 R + S L+ + V+ G V L +VA V + V + + + + Sbjct: 173 RANVSAMKVLNMAKCLEQLDVDVGGGRKVLLTKVAQVLKTGAATMEVVPQNVSFASPILQ 232 Query: 82 GIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLK 141 + + L E Q ++I +P T RR V+ K V+ +R L+ Sbjct: 233 RVTRFDGTLQVSKEQQKIKITMPPITTARRQKAVEEIQLVVSSFKNKVKQVRTQASRALQ 292 Query: 142 KSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFE 177 E L + + S ++ D E Sbjct: 293 ----ESGIDETASRELHQQLDECVHSFVE--DKVTE 322 >gi|322493436|emb|CBZ28723.1| conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 211 Score = 45.8 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 60/147 (40%), Gaps = 12/147 (8%) Query: 38 LDLVKVEAYGSHVPL-NQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEG 96 L+L++VE G H+ L +VA V + ++ +S+ + + + L EG Sbjct: 55 LELLEVEVAGGHMVLLVKVAQVVKTGNTTIEITPNSASFGSSILQRVSRFDGTLQISKEG 114 Query: 97 QVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVAS 156 +R+ +P T RR V + V++ + + L+ + Sbjct: 115 TKIRVVIPPITTARRDKTVAEVSNLISTFRQRVKHSKTKAVKVLQDAGLDDGV------- 167 Query: 157 LENDIQKITDSTIKNIDSFFEEKKKEI 183 + ++ + DST ++F EEK E+ Sbjct: 168 -QQELTALVDST---ANAFVEEKVAEL 190 >gi|217070266|gb|ACJ83493.1| unknown [Medicago truncatula] Length = 48 Score = 45.4 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%) Query: 137 MDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 MD +KK + +D + LE ++ +T IK + + K+KEI Sbjct: 1 MDAIKKL--NSILPKDDLKRLEKEVDDLTKKFIKTAEDVCKAKEKEI 45 >gi|325278091|ref|ZP_08143608.1| ribosome recycling factor [Pseudomonas sp. TJI-51] gi|324096778|gb|EGB95107.1| ribosome recycling factor [Pseudomonas sp. TJI-51] Length = 33 Score = 44.6 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 11/33 (33%), Positives = 20/33 (60%) Query: 154 VASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +DIQK+TD + +D+ F+ K+K++M Sbjct: 1 ERRAADDIQKLTDKFVAEVDAAFKAKEKDLMAV 33 >gi|116334924|ref|YP_802419.1| hypothetical protein CRP_022 [Candidatus Carsonella ruddii PV] gi|116235205|dbj|BAF35053.1| hypothetical protein [Candidatus Carsonella ruddii PV] Length = 176 Score = 44.6 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 59/128 (46%), Gaps = 4/128 (3%) Query: 34 SPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPI 93 + + + +K++ S++ L ++ ++ ++ + + D++++ + + + N G N + Sbjct: 28 NIEIFNNLKIKYNNSYINLRELCSIKNIDKKKFLFIFNDQKILLYLIKSKYFENFGFNIL 87 Query: 94 VEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDM 153 + + + VP + E R+ +K+ E + ++R+ + H+K S+D Sbjct: 88 KKKTTIELLVPNISREFRINFLKIIKQEYEYFIEILESLRKKELLHIKIQ----NISKDE 143 Query: 154 VASLENDI 161 + E I Sbjct: 144 ILRQEKVI 151 >gi|322823625|gb|EFZ29338.1| hypothetical protein TCSYLVIO_4407 [Trypanosoma cruzi] Length = 209 Score = 43.9 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 20/136 (14%), Positives = 48/136 (35%), Gaps = 8/136 (5%) Query: 47 GSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPET 106 G V L +VA V + + + + + + + + L E Q +++ +P Sbjct: 65 GRKVLLTKVAQVVKTNNTTIEIVPQNASFASPILQRVTRFDGTLQVTKEQQKIKVVMPPV 124 Query: 107 TEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQ---- 162 T RR V+ + K +++R + L+ E+ + L + Sbjct: 125 TTARRDKAVQEINQVISLFKQKTKHVRTNASKALQ----DASIEENALRELNAQLDTTVN 180 Query: 163 KITDSTIKNIDSFFEE 178 T+ + ++ + Sbjct: 181 AFTEEKVAELEQLAAD 196 >gi|169837887|ref|ZP_02871075.1| hypothetical protein cdivTM_12469 [candidate division TM7 single-cell isolate TM7a] Length = 44 Score = 43.9 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Query: 60 VLEPRMLVVSVWDKEMVASVERGIHESN-LGLNPIVEGQVLRIP 102 E +M D +A++E I + LG NP +G+V+RIP Sbjct: 1 APEAQMSTCHSVDPSNIAAIEASIRANEALGFNPSDDGRVVRIP 44 >gi|154341467|ref|XP_001566685.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] gi|134064010|emb|CAM40201.1| conserved hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 211 Score = 43.9 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 1/107 (0%) Query: 38 LDLVKVEAYGSHVPL-NQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEG 96 L+L++VE G H L +V+ V + ++ S+ + + + L EG Sbjct: 55 LELLEVEMAGGHTVLLIKVSQVVKTGNMTIEITPNSASFGNSILQRVSRFDSALQVSKEG 114 Query: 97 QVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKS 143 +R+ +P T RR V+ + V+ R + L+ + Sbjct: 115 PKIRVVLPPITTARRDRTVEEVKNLISIFRQLVKQSRTKAVKVLQDA 161 >gi|296482311|gb|DAA24426.1| ribosome-recycling factor, mitochondrial precursor [Bos taurus] Length = 113 Score = 43.5 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 15/34 (44%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSP 35 +I+L+ + + M I LK + R SP Sbjct: 80 EDIINLEEVDEEMKSVIEALKDNFNKTVNIRTSP 113 >gi|124505541|ref|XP_001351512.1| ribosome recycling factor, putative [Plasmodium falciparum 3D7] gi|23498271|emb|CAD49242.1| ribosome recycling factor, putative [Plasmodium falciparum 3D7] Length = 266 Score = 43.5 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 56/147 (38%), Gaps = 14/147 (9%) Query: 38 LDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNL-----GLNP 92 + + + ++ L VA V + ++ + + +++ IH L Sbjct: 123 FNNISILKDKKNIKLCDVAQVVIKSSNLIYFYPY---TINDIQKIIHNLKLKDNTWNPTV 179 Query: 93 IVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASED 152 +GQ + + + +E+ ++ K A EK K +RN+R D + D Sbjct: 180 SNDGQYVILQIQPLSEDVKMKKKKEAKDLFEKIKNDIRNVRYKIRDDI-----IKNIEGD 234 Query: 153 MVASLE-NDIQKITDSTIKNIDSFFEE 178 +E N + +K I++ +E+ Sbjct: 235 QWKIVERNKLDNYIKDKMKLIENVYEQ 261 >gi|47188071|emb|CAG14867.1| unnamed protein product [Tetraodon nigroviridis] Length = 41 Score = 41.9 bits (98), Expect = 0.038, Method: Composition-based stats. Identities = 9/35 (25%), Positives = 20/35 (57%) Query: 36 SMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSV 70 LD + V PLNQ+ +++ P++++V++ Sbjct: 1 GALDHIVVTTGDGKFPLNQLGQISMKSPQLIIVNM 35 >gi|326671216|ref|XP_003199385.1| PREDICTED: c-type lectin domain family 4 member M-like [Danio rerio] Length = 450 Score = 41.9 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 70/180 (38%), Gaps = 13/180 (7%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVS-----PSMLDLVKVEAYGSHVPLNQV 55 +N++ +L K +M + I+ L ++ + + ML+ + LN++ Sbjct: 126 LNKITNLTEEKSKMLNKITNLTEEKSKILNKITNLTEEKSKMLNKITNLTEEKSKMLNKI 185 Query: 56 ANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALV 115 N+T + +ML ++ E N N E + + TEE+ L Sbjct: 186 TNLTEEKSKMLN------KITNLTEEKSKMLNKNTNLTEEKSKILNKITNLTEEKSKMLN 239 Query: 116 KVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSF 175 K+ + EKSKI + I + K K +E + + N I +T+ K ++ Sbjct: 240 KITNLTEEKSKI-LNKITNLTEEKNKMLNKITNLTE-EKSKMLNKITNLTEEKSKMLNKI 297 >gi|70927050|ref|XP_735968.1| ribosome recycling factor [Plasmodium chabaudi chabaudi] gi|56510105|emb|CAH76160.1| ribosome recycling factor, putative [Plasmodium chabaudi chabaudi] Length = 114 Score = 41.5 bits (97), Expect = 0.047, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 48/117 (41%), Gaps = 11/117 (9%) Query: 71 WDKEMVASVERGIHESNL-----GLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 + +++ +++ IH + +GQ + + +P T E +L K A EK Sbjct: 1 FYPYIISDIQKIIHTLKVKDNTWNPTTSNDGQCILLQIPPLTNEVKLKKKKEAKDLLEKV 60 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLE-NDIQKITDSTIKNIDSFFEEKKK 181 K +RNIR D + D E N + + +KNI++ +E+ K Sbjct: 61 KNDIRNIRHKIRDFI-----GKNIEGDEWKIEERNKLDNYIKNKVKNIENVYEKYTK 112 >gi|123475253|ref|XP_001320805.1| hypothetical protein [Trichomonas vaginalis G3] gi|121903618|gb|EAY08582.1| hypothetical protein TVAG_191050 [Trichomonas vaginalis G3] Length = 565 Score = 41.2 bits (96), Expect = 0.061, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 11/77 (14%) Query: 113 ALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNI 172 +VK A A EK + ++N + L K+ K+ + + D + + Q D I+ Sbjct: 395 DVVKDAKAELEKITV-IKN----YKEMLSKNEKTNQLTNDEIKKRQTQ-QDGHDKRIEK- 447 Query: 173 DSF----FEEKKKEIMH 185 D F+ ++KEI+ Sbjct: 448 DKIRVVDFKSREKEILE 464 >gi|145518922|ref|XP_001445333.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124412777|emb|CAK77936.1| unnamed protein product [Paramecium tetraurelia] Length = 1814 Score = 41.2 bits (96), Expect = 0.065, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 10/86 (11%) Query: 110 RRLALVKVAHAYAEKSKISVRNI-------RRDGMDHLKKSRKSGKASEDMVASLENDIQ 162 RL K AE ++ R I + + L++ K ED LE + Q Sbjct: 1513 MRLERTKEEQRQAELAEQEERRIAELKRIEEQLQAEKLRQEELKLKQQEDDQRRLEEEQQ 1572 Query: 163 KITDSTIKNI---DSFFEEKKKEIMH 185 K + IK + +K++E++ Sbjct: 1573 KKREDEIKQLLEEQQLQAQKEQELLQ 1598 >gi|213023708|ref|ZP_03338155.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 34 Score = 41.2 bits (96), Expect = 0.073, Method: Composition-based stats. Identities = 9/28 (32%), Positives = 15/28 (53%) Query: 8 QNIKDRMGDTISFLKKDMMTLRTGRVSP 35 ++ + RM + K + +RTGR SP Sbjct: 7 KDAEVRMEKCVEAFKTQISKVRTGRASP 34 >gi|238029025|ref|YP_002913250.1| Rhs family protein [Burkholderia glumae BGR1] gi|237880602|gb|ACR32930.1| Rhs family protein [Burkholderia glumae BGR1] Length = 1548 Score = 40.8 bits (95), Expect = 0.081, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 41/115 (35%), Gaps = 17/115 (14%) Query: 33 VSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESN----- 87 + LD V+ G + L++V + P + + +++A + I + Sbjct: 29 ANLKALDRWLVDVSGGVLTLDRVETIARNAPVLANI-FAAVDLIADIRAMIDHGDRPIDL 87 Query: 88 ----------LGLNPIVEGQ-VLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 +G+ PI G +R+ + R + K A E + VR+ Sbjct: 88 FDWVNLGLDLIGVIPIPMGTAQIRMGARPMLKLLREEIAKNGKAMGEAAMQMVRD 142 >gi|238023441|ref|YP_002907674.1| Rhs family protein [Burkholderia glumae BGR1] gi|237880494|gb|ACR32823.1| Rhs family protein [Burkholderia glumae BGR1] Length = 1548 Score = 40.8 bits (95), Expect = 0.081, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 41/115 (35%), Gaps = 17/115 (14%) Query: 33 VSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESN----- 87 + LD V+ G + L++V + P + + +++A + I + Sbjct: 29 ANLKALDRWLVDVSGGVLTLDRVETIARNAPVLANI-FAAVDLIADIRAMIDHGDRPIDL 87 Query: 88 ----------LGLNPIVEGQ-VLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 +G+ PI G +R+ + R + K A E + VR+ Sbjct: 88 FDWVNLGLDLIGVIPIPMGTAQIRMGARPMLKLLREEIAKNGKAMGEAAMQMVRD 142 >gi|238024689|ref|YP_002908921.1| Rhs family protein [Burkholderia glumae BGR1] gi|237879354|gb|ACR31686.1| Rhs family protein [Burkholderia glumae BGR1] Length = 1560 Score = 40.8 bits (95), Expect = 0.081, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 41/115 (35%), Gaps = 17/115 (14%) Query: 33 VSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESN----- 87 + LD V+ G + L++V + P + + +++A + I + Sbjct: 29 ANLKALDRWLVDVSGGVLTLDRVETIARNAPVLANI-FAAVDLIADIRAMIDHGDRPIDL 87 Query: 88 ----------LGLNPIVEGQ-VLRIPVPETTEERRLALVKVAHAYAEKSKISVRN 131 +G+ PI G +R+ + R + K A E + VR+ Sbjct: 88 FDWVNLGLDLIGVIPIPMGTAQIRMGARPMLKLLREEIAKNGKAMGEAAMQMVRD 142 >gi|112253526|gb|ABI14350.1| unknown [Pfiesteria piscicida] Length = 659 Score = 40.4 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 5/69 (7%) Query: 112 LALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKN 171 A VK A A EK+K V +K++ + +E V E ++K + IK Sbjct: 65 EAKVKEAKAEVEKAKAEV----EKAKAEIKEAEAKVEKAEVKVKEAEAKVEK-AKAEIKE 119 Query: 172 IDSFFEEKK 180 ++ E+ + Sbjct: 120 AEAKVEKAE 128 >gi|258645936|ref|ZP_05733405.1| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Dialister invisus DSM 15470] gi|260403305|gb|EEW96852.1| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Dialister invisus DSM 15470] Length = 206 Score = 40.0 bits (93), Expect = 0.15, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 21/35 (60%) Query: 139 HLKKSRKSGKASEDMVASLENDIQKITDSTIKNID 173 +KK R +A E + ++ +IQK+TD ++ I+ Sbjct: 170 EVKKQRADDEAVEALNKKVKEEIQKLTDEYMEKIN 204 >gi|114565586|ref|YP_752740.1| Serine--tRNA ligase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122319230|sp|Q0B0Y5|SYS_SYNWW RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec) synthetase gi|114336521|gb|ABI67369.1| seryl-tRNA synthetase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 427 Score = 40.0 bits (93), Expect = 0.15, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 14/82 (17%) Query: 102 PVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDI 161 P EERR LV+V E+ K N R + + K +K G D++ + Sbjct: 29 PFLALDEERRKILVQV-----EERK----NFRNNSSQQIGKMKKEGLNPADLMEEVRQAG 79 Query: 162 QKITDSTIKNIDSFFEEKKKEI 183 Q+ IK +D +KEI Sbjct: 80 QQ-----IKELDEELARVEKEI 96 >gi|148673197|gb|EDL05144.1| leucine rich repeat and coiled-coil domain containing 1, isoform CRA_c [Mus musculus] Length = 994 Score = 40.0 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 6/85 (7%) Query: 108 EERRLALVKVAHAYAEKSK------ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDI 161 EE R A + + +K + + V+ ++ D +K + S ++ + Sbjct: 880 EEIRKAYSTLNKKWHDKGELLSHLEMQVKEVKEKFEDKERKLKAERDKSLELQKDAMEKL 939 Query: 162 QKITDSTIKNIDSFFEEKKKEIMHF 186 Q + D+ + +D E + EIM Sbjct: 940 QNMDDAFRRQVDEIVEAHQAEIMQL 964 >gi|242071431|ref|XP_002450992.1| hypothetical protein SORBIDRAFT_05g022270 [Sorghum bicolor] gi|241936835|gb|EES09980.1| hypothetical protein SORBIDRAFT_05g022270 [Sorghum bicolor] Length = 918 Score = 40.0 bits (93), Expect = 0.17, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 13/90 (14%) Query: 107 TEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLE---NDIQK 163 EER L++ A AE+ ++N + D K+ K + +D S + +I Sbjct: 675 DEERLTQLLEKAKNKAEE---LIKNDEKTAADVAKEEEKKKQMVKDFSNSAQAVIKEIDD 731 Query: 164 ITDSTIKN-------IDSFFEEKKKEIMHF 186 +K ++ +KE++ Sbjct: 732 QLKEEVKKQQQLTDLVERSLITNEKELLMI 761 >gi|38173988|gb|AAH61202.1| Lrrcc1 protein [Mus musculus] Length = 996 Score = 39.6 bits (92), Expect = 0.18, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 6/85 (7%) Query: 108 EERRLALVKVAHAYAEKSK------ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDI 161 EE R A + + +K + + V+ ++ D +K + S ++ + Sbjct: 872 EEIRKAYSTLNKKWHDKGELLSHLEMQVKEVKEKFEDKERKLKAERDKSLELQKDAMEKL 931 Query: 162 QKITDSTIKNIDSFFEEKKKEIMHF 186 Q + D+ + +D E + EIM Sbjct: 932 QNMDDAFRRQVDEIVEAHQAEIMQL 956 >gi|290378|gb|AAA71995.1| ORF2 [Desulfovibrio vulgaris str. Hildenborough] Length = 370 Score = 39.6 bits (92), Expect = 0.18, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 9/97 (9%) Query: 88 LGLNPIVEG--QVLRIPVPETTEERRLALVKVAHAY-AEKSKISVRNIRRDGMDHLKKSR 144 LG P+V G +L T+ R K+A AE K +V R + D LK + Sbjct: 264 LGAVPMVVGIWPILLTGAYAITK--RKE--KIAAEEQAEAVKQAVAASRAEADDKLKAAL 319 Query: 145 KSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 +D A++ +++K D K + K++ Sbjct: 320 AKAD--KDKEAAVTREVKKAVDEARKTFEEELAAKEQ 354 >gi|254675306|ref|NP_083191.2| leucine-rich repeat and coiled-coil domain-containing protein 1 isoform 3 [Mus musculus] gi|148673196|gb|EDL05143.1| leucine rich repeat and coiled-coil domain containing 1, isoform CRA_b [Mus musculus] gi|187952985|gb|AAI38735.1| Leucine rich repeat and coiled-coil domain containing 1 [Mus musculus] gi|223461066|gb|AAI38736.1| Leucine rich repeat and coiled-coil domain containing 1 [Mus musculus] Length = 993 Score = 39.6 bits (92), Expect = 0.18, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 6/85 (7%) Query: 108 EERRLALVKVAHAYAEKSK------ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDI 161 EE R A + + +K + + V+ ++ D +K + S ++ + Sbjct: 888 EEIRKAYSTLNKKWHDKGELLSHLEMQVKEVKEKFEDKERKLKAERDKSLELQKDAMEKL 947 Query: 162 QKITDSTIKNIDSFFEEKKKEIMHF 186 Q + D+ + +D E + EIM Sbjct: 948 QNMDDAFRRQVDEIVEAHQAEIMQL 972 >gi|12835963|dbj|BAB23437.1| unnamed protein product [Mus musculus] Length = 993 Score = 39.6 bits (92), Expect = 0.18, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 6/85 (7%) Query: 108 EERRLALVKVAHAYAEKSK------ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDI 161 EE R A + + +K + + V+ ++ D +K + S ++ + Sbjct: 888 EEIRKAYSTLNKKWHDKGELLSHLEMQVKEVKEKFEDKERKLKAERDKSLELQKDAMEKL 947 Query: 162 QKITDSTIKNIDSFFEEKKKEIMHF 186 Q + D+ + +D E + EIM Sbjct: 948 QNMDDAFRRQVDEIVEAHQAEIMQL 972 >gi|120603449|ref|YP_967849.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfovibrio vulgaris DP4] gi|120563678|gb|ABM29422.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Desulfovibrio vulgaris DP4] Length = 370 Score = 39.6 bits (92), Expect = 0.18, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 9/97 (9%) Query: 88 LGLNPIVEG--QVLRIPVPETTEERRLALVKVAHAY-AEKSKISVRNIRRDGMDHLKKSR 144 LG P+V G +L T+ R K+A AE K +V R + D LK + Sbjct: 264 LGAVPMVVGIWPILLTGAYAITK--RKE--KIAAEEQAEAVKQAVAASRAEADDKLKAAL 319 Query: 145 KSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 +D A++ +++K D K + K++ Sbjct: 320 AKAD--KDKEAAVTREVKKAVDEARKTFEEELAAKEQ 354 >gi|46578950|ref|YP_009758.1| hmc operon protein 2 [Desulfovibrio vulgaris str. Hildenborough] gi|47606726|sp|P33389|HMC2_DESVH RecName: Full=Protein DVU_0535; AltName: Full=HMC operon ORF 2 gi|46448363|gb|AAS95017.1| hmc operon protein 2 [Desulfovibrio vulgaris str. Hildenborough] gi|311232808|gb|ADP85662.1| hypothetical protein Deval_0493 [Desulfovibrio vulgaris RCH1] Length = 370 Score = 39.6 bits (92), Expect = 0.18, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 9/97 (9%) Query: 88 LGLNPIVEG--QVLRIPVPETTEERRLALVKVAHAY-AEKSKISVRNIRRDGMDHLKKSR 144 LG P+V G +L T+ R K+A AE K +V R + D LK + Sbjct: 264 LGAVPMVVGIWPILLTGAYAITK--RKE--KIAAEEQAEAVKQAVAASRAEADDKLKAAL 319 Query: 145 KSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 +D A++ +++K D K + K++ Sbjct: 320 AKAD--KDKEAAVTREVKKAVDEARKTFEEELAAKEQ 354 >gi|91084119|ref|XP_969552.1| PREDICTED: similar to laminin alpha-1, 2 chain [Tribolium castaneum] gi|270008021|gb|EFA04469.1| hypothetical protein TcasGA2_TC014773 [Tribolium castaneum] Length = 3160 Score = 39.6 bits (92), Expect = 0.19, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 74/185 (40%), Gaps = 24/185 (12%) Query: 4 VIDLQNIKDRMGDT---ISFLKKDMMTLRTGRVSPSM---LDLVKVEAYGSHVPLNQVAN 57 +++L+N+ D T + LK+D+ L G+ + + L ++ + ++++ Sbjct: 2108 ILNLKNLSDEFAKTSELLEDLKRDI--LFNGKNNNELNAFLRDIQKDIRNQSDVISKLKK 2165 Query: 58 VTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEG---QVLRIPVPETTEERRLAL 114 + + R + M+AS+E+ + ++N+ L + L + + Sbjct: 2166 -SKNDARNVS------SMIASIEQRVKDTNISLQYELTKSYYNYLNLTSARDIAKLMER- 2217 Query: 115 VKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDM-VASLENDIQKITDSTIKNID 173 VK E +S+ N D K + S D + ++ I+++T I++ + Sbjct: 2218 VKKTRKELENINVSLNNT---ATDQAKDLNANKFKSTDNNLKMIQEQIEQLTKK-IRDAN 2273 Query: 174 SFFEE 178 E Sbjct: 2274 ERVES 2278 >gi|50511097|dbj|BAD32534.1| mKIAA1764 protein [Mus musculus] Length = 1034 Score = 39.6 bits (92), Expect = 0.21, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 6/85 (7%) Query: 108 EERRLALVKVAHAYAEKSK------ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDI 161 EE R A + + +K + + V+ ++ D +K + S ++ + Sbjct: 896 EEIRKAYSTLNKKWHDKGELLSHLEMQVKEVKEKFEDKERKLKAERDKSLELQKDAMEKL 955 Query: 162 QKITDSTIKNIDSFFEEKKKEIMHF 186 Q + D+ + +D E + EIM Sbjct: 956 QNMDDAFRRQVDEIVEAHQAEIMQL 980 >gi|254675310|ref|NP_001157052.1| leucine-rich repeat and coiled-coil domain-containing protein 1 isoform 2 [Mus musculus] Length = 1010 Score = 39.2 bits (91), Expect = 0.23, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 6/85 (7%) Query: 108 EERRLALVKVAHAYAEKSK------ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDI 161 EE R A + + +K + + V+ ++ D +K + S ++ + Sbjct: 872 EEIRKAYSTLNKKWHDKGELLSHLEMQVKEVKEKFEDKERKLKAERDKSLELQKDAMEKL 931 Query: 162 QKITDSTIKNIDSFFEEKKKEIMHF 186 Q + D+ + +D E + EIM Sbjct: 932 QNMDDAFRRQVDEIVEAHQAEIMQL 956 >gi|66390999|dbj|BAD98748.1| staphylocoagulase [Staphylococcus aureus] Length = 662 Score = 39.2 bits (91), Expect = 0.23, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 11/75 (14%) Query: 102 PVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDI 161 V T E + K E+ + +VR ++ +K K SED ++ Sbjct: 134 SVYNLTMEEYNEISKSLKDAEEEFRKNVREVQ-------EKEVKLKTYSEDEEEKATKEV 186 Query: 162 QKITDSTIKNIDSFF 176 + + +D+ + Sbjct: 187 YDL----VAEVDTIY 197 >gi|123601|sp|P26413|HSP70_SOYBN RecName: Full=Heat shock 70 kDa protein gi|18663|emb|CAA44620.1| Heat Shock 70kD protein [Glycine max] Length = 645 Score = 39.2 bits (91), Expect = 0.23, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 14/92 (15%) Query: 105 ETTEERRLALVKVAHAY-AE--------KSKISVRNIRRDGMDHLKKSRKSGKASEDMV- 154 ++E +VK A Y AE ++K S+ N + + +K + GK S D Sbjct: 514 RLSKEEIEKMVKDAERYKAEDEEVKKKVEAKNSLENYAYNMRNTIKDEKIGGKLSPDEKQ 573 Query: 155 ---ASLENDIQKITDSTIKNIDSFFEEKKKEI 183 ++E+ IQ + + + +D FE+K+KE+ Sbjct: 574 KIEKAVEDAIQWLEGNQMAEVDE-FEDKQKEL 604 >gi|189028878|sp|Q69ZB0|LRCC1_MOUSE RecName: Full=Leucine-rich repeat and coiled-coil domain-containing protein 1 Length = 1026 Score = 39.2 bits (91), Expect = 0.24, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 6/85 (7%) Query: 108 EERRLALVKVAHAYAEKSK------ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDI 161 EE R A + + +K + + V+ ++ D +K + S ++ + Sbjct: 888 EEIRKAYSTLNKKWHDKGELLSHLEMQVKEVKEKFEDKERKLKAERDKSLELQKDAMEKL 947 Query: 162 QKITDSTIKNIDSFFEEKKKEIMHF 186 Q + D+ + +D E + EIM Sbjct: 948 QNMDDAFRRQVDEIVEAHQAEIMQL 972 >gi|254675308|ref|NP_001157051.1| leucine-rich repeat and coiled-coil domain-containing protein 1 isoform 1 [Mus musculus] gi|148673195|gb|EDL05142.1| leucine rich repeat and coiled-coil domain containing 1, isoform CRA_a [Mus musculus] Length = 1026 Score = 39.2 bits (91), Expect = 0.24, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 6/85 (7%) Query: 108 EERRLALVKVAHAYAEKSK------ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDI 161 EE R A + + +K + + V+ ++ D +K + S ++ + Sbjct: 888 EEIRKAYSTLNKKWHDKGELLSHLEMQVKEVKEKFEDKERKLKAERDKSLELQKDAMEKL 947 Query: 162 QKITDSTIKNIDSFFEEKKKEIMHF 186 Q + D+ + +D E + EIM Sbjct: 948 QNMDDAFRRQVDEIVEAHQAEIMQL 972 >gi|710400|gb|AAA86507.1| pyruvate dehydrogenase E1 alpha subunit [Arabidopsis thaliana] Length = 389 Score = 39.2 bits (91), Expect = 0.26, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 3/53 (5%) Query: 125 SKISVRNIR--RDGMDHLKKSRKSGKA-SEDMVASLENDIQKITDSTIKNIDS 174 ++ + +R RD ++ +KK S +E + +E +I+K D I Sbjct: 302 TRDEISGVRQERDPIERIKKLVLSHDLATEKELKDMEKEIRKEVDDAIAKAKD 354 >gi|15218940|ref|NP_176198.1| AT-E1 ALPHA; oxidoreductase, acting on the aldehyde or oxo group of donors, disulfide as acceptor / pyruvate dehydrogenase (acetyl-transferring) [Arabidopsis thaliana] gi|27735220|sp|P52901|ODPA1_ARATH RecName: Full=Pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial; Short=PDHE1-A; Flags: Precursor gi|5080822|gb|AAD39331.1|AC007258_20 pyruvate dehydrogenase E1 alpha subunit [Arabidopsis thaliana] gi|21593256|gb|AAM65205.1| pyruvate dehydrogenase e1 alpha subunit, putative [Arabidopsis thaliana] gi|24030439|gb|AAN41374.1| putative pyruvate dehydrogenase e1 alpha subunit [Arabidopsis thaliana] gi|332195517|gb|AEE33638.1| pyruvate dehydrogenase complex E1 alpha subunit [Arabidopsis thaliana] Length = 389 Score = 39.2 bits (91), Expect = 0.29, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 3/53 (5%) Query: 125 SKISVRNIR--RDGMDHLKKSRKSGKA-SEDMVASLENDIQKITDSTIKNIDS 174 ++ + +R RD ++ +KK S +E + +E +I+K D I Sbjct: 302 TRDEISGVRQERDPIERIKKLVLSHDLATEKELKDMEKEIRKEVDDAIAKAKD 354 >gi|297840565|ref|XP_002888164.1| AT-E1 alpha [Arabidopsis lyrata subsp. lyrata] gi|297334005|gb|EFH64423.1| AT-E1 alpha [Arabidopsis lyrata subsp. lyrata] Length = 389 Score = 39.2 bits (91), Expect = 0.29, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 3/53 (5%) Query: 125 SKISVRNIR--RDGMDHLKKSRKSGKA-SEDMVASLENDIQKITDSTIKNIDS 174 ++ + +R RD ++ +KK S +E + +E +I+K D I Sbjct: 302 TRDEISGVRQERDPIERIKKLVLSHDLATEKELKDMEKEIRKEVDDAIAKAKD 354 >gi|13430788|gb|AAK26016.1|AF360306_1 putative pyruvate dehydrogenase e1 alpha subunit [Arabidopsis thaliana] Length = 389 Score = 39.2 bits (91), Expect = 0.29, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 3/53 (5%) Query: 125 SKISVRNIR--RDGMDHLKKSRKSGKA-SEDMVASLENDIQKITDSTIKNIDS 174 ++ + +R RD ++ +KK S +E + +E +I+K D I Sbjct: 302 TRDEISGVRQERDPIERIKKLVLSHDLATEKELKDMEKEIRKEVDDAIAKAKD 354 >gi|157849684|gb|ABV89625.1| pyruvate dehydrogenase complex E1 alpha subunit dehydrogenase [Brassica rapa] Length = 389 Score = 38.9 bits (90), Expect = 0.30, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 3/53 (5%) Query: 125 SKISVRNIR--RDGMDHLKKSRKSGKA-SEDMVASLENDIQKITDSTIKNIDS 174 ++ + +R RD ++ +KK S +E + +E +I+K D I Sbjct: 302 TRDEISGVRQERDPIERIKKLVLSHDLATEKELKDMEKEIRKEVDDAIAKAKD 354 >gi|92112743|ref|YP_572671.1| pilus assembly protein, PilO [Chromohalobacter salexigens DSM 3043] gi|91795833|gb|ABE57972.1| Pilus assembly protein, PilO [Chromohalobacter salexigens DSM 3043] Length = 216 Score = 38.9 bits (90), Expect = 0.34, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 44/128 (34%), Gaps = 22/128 (17%) Query: 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 + + RM + L D + P++LD + +A H + + P+ Sbjct: 89 MAELDARMQALLEMLPSD-AEI------PALLDDIS-DAAQDHQLVIDSIRLRAPVPQTF 140 Query: 67 VV-SVWDK-------------EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRL 112 + +D VA++ R + + L P+ EG LR+ + T R Sbjct: 141 YIEQPFDIEVRGGYHEIAAFLGSVAALPRIVTLHDFTLTPVNEGDTLRLSLLARTYSYRE 200 Query: 113 ALVKVAHA 120 A A Sbjct: 201 DADPKARA 208 >gi|258565735|ref|XP_002583612.1| predicted protein [Uncinocarpus reesii 1704] gi|237907313|gb|EEP81714.1| predicted protein [Uncinocarpus reesii 1704] Length = 771 Score = 38.9 bits (90), Expect = 0.35, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 8/60 (13%) Query: 103 VPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQ 162 PE + R L A E+ R +R+ +K+ + + +E+ SLE +Q Sbjct: 2 APELSTLSREEL---LRALEEQ-----RRLRQQAEADKEKAERDKEKAEEDKKSLEKQLQ 53 >gi|158423261|ref|YP_001524553.1| ABC transporter substrate binding protein [Azorhizobium caulinodans ORS 571] gi|158330150|dbj|BAF87635.1| ABC transporter substrate binding protein [Azorhizobium caulinodans ORS 571] Length = 353 Score = 38.9 bits (90), Expect = 0.38, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 50/149 (33%), Gaps = 28/149 (18%) Query: 1 MNQVIDLQN-IKDRMGDTISFLKKDMMTLRTGRVSPSMLD--------LVKVEAYGSHVP 51 M ++ L + M +K+ + L +P L + V + +P Sbjct: 184 MVEIAKLNGGSESNMEPAFEAVKRLLPNLGAVAANPGALATLFQQGQIDISVNYLNAVLP 243 Query: 52 LNQVA---NVTVLEPRMLVVSVWDKEMVASVERGIHESNLG---LNPIVEGQV-LRIPVP 104 L Q + + ++V + + ++ +L +N + G+V R+ Sbjct: 244 LAQNGVEIAIARPDSGWVLV----RNSLHAIANA-KNLDLAYAYINAALSGEVQARMAAA 298 Query: 105 ET-------TEERRLALVKVAHAYAEKSK 126 T L KVA + AE SK Sbjct: 299 PNFLLPTNRTVAFSSELQKVAKSEAELSK 327 >gi|156547421|ref|XP_001604560.1| PREDICTED: similar to laminin gamma 1 chain [Nasonia vitripennis] Length = 1617 Score = 38.5 bits (89), Expect = 0.47, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 9/79 (11%) Query: 101 IPVPETT----EERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVAS 156 I +PE + R + K A +++KI + + +D + + SED++ Sbjct: 1281 ISLPEVNLTDLQNRVEEVNKEAAKIKDQAKILL----DENIDLIHDIEDKVRKSEDLLYK 1336 Query: 157 LENDIQKITDSTIKNIDSF 175 E+ Q IT + +D Sbjct: 1337 AEDQ-QTITAELLAEVDDA 1354 >gi|313218077|emb|CBY41402.1| unnamed protein product [Oikopleura dioica] Length = 233 Score = 38.5 bits (89), Expect = 0.49, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 57/155 (36%), Gaps = 12/155 (7%) Query: 40 LVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVL 99 + V G L +A + + E+V + + ++NL + +V+ Sbjct: 70 QLSVLYDGDVFCLEDLATLAASRSIVKASVAGCPELVQPISQACQKANL--IATSQNEVI 127 Query: 100 RIPVPETTEERRLALVKVAHAYAEKSKISVRNIRR-DGMDHLKKSRKSGKASEDMVASLE 158 I +P TT R LVK + + ++ + ++ + S + S+D+ Sbjct: 128 TIKIPPTTAASRKKLVKNVDQIEKSFSQKMNKLQTSQYLKAMEAAESSSQYSQDLEEEWA 187 Query: 159 ND---------IQKITDSTIKNIDSFFEEKKKEIM 184 ++K+ +S I E K+ E++ Sbjct: 188 AKSLAAHVILTLEKMMESAEAEISKNAEAKRHELL 222 >gi|195995537|ref|XP_002107637.1| hypothetical protein TRIADDRAFT_51343 [Trichoplax adhaerens] gi|190588413|gb|EDV28435.1| hypothetical protein TRIADDRAFT_51343 [Trichoplax adhaerens] Length = 7662 Score = 38.5 bits (89), Expect = 0.49, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 58/146 (39%), Gaps = 33/146 (22%) Query: 48 SHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETT 107 + + LN V T ++ ++ V DK+++ +E + E +L +++ + Sbjct: 6900 AMIELNNVETATAVK-KITAVKP-DKKVI-EIEAELKEKHLE-------DQIKLRL---- 6945 Query: 108 EERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMV---ASLE------ 158 E R + ++ E+ + ++ + + + ED+ + E Sbjct: 6946 -EHREEMAEIERQAQEE--------QNKALEEIVEGMAAKLEEEDVEFQKKAAEAKEKLS 6996 Query: 159 -NDIQKITDSTIKNIDSFFEEKKKEI 183 + QK+ D K ++S + ++ EI Sbjct: 6997 AEEFQKMLDDHEKELESMQQNQEIEI 7022 >gi|118473989|ref|YP_884615.1| hypothetical protein MSMEG_0200 [Mycobacterium smegmatis str. MC2 155] gi|118175276|gb|ABK76172.1| hypothetical protein MSMEG_0200 [Mycobacterium smegmatis str. MC2 155] Length = 850 Score = 38.1 bits (88), Expect = 0.51, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 37/86 (43%), Gaps = 12/86 (13%) Query: 102 PVPETTEERRLALVKVAHAYAE-----KSKISVRNIRRDGMDHLKK-SRKSGKASEDMVA 155 VPE T++ + KV E ++K+ + + K + K+ + ++ V Sbjct: 734 TVPEPTKKVGGEVKKVVADIDEARAEIEAKV------KKANERAKASAEKARERTQKAVK 787 Query: 156 SLENDIQKITDSTIKNIDSFFEEKKK 181 ++ + KI D+ K I + + +K Sbjct: 788 DAQDRVNKIADNGRKQIKAVADGVEK 813 >gi|241889237|ref|ZP_04776540.1| putative maebl [Gemella haemolysans ATCC 10379] gi|241864074|gb|EER68453.1| putative maebl [Gemella haemolysans ATCC 10379] Length = 1081 Score = 38.1 bits (88), Expect = 0.52, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 7/52 (13%) Query: 138 DHLKKSRKSGKASED-------MVASLENDIQKITDSTIKNIDSFFEEKKKE 182 +K K+ + ++D +++ K+TD K ++ K+KE Sbjct: 346 KAVKDIEKAKETAQDAFDKAASDTKLYADELNKLTDEYNKTLEEVKAAKEKE 397 >gi|86565236|ref|NP_510801.2| hypothetical protein Y40C7B.1 [Caenorhabditis elegans] gi|68159249|gb|AAF60541.2| Hypothetical protein Y40C7B.1 [Caenorhabditis elegans] Length = 916 Score = 38.1 bits (88), Expect = 0.55, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 42/118 (35%), Gaps = 20/118 (16%) Query: 78 SVERGIHESNLGLNPIVEGQVLRI-----PVP---ETTEERRLALVKVAHA----YAEKS 125 + + I + +L L EG +R+ P R L + H EK Sbjct: 156 PIRKTIRDCDLDLMISDEGFAVRVIKNHNRFPKQIPVAISTREELQQQRHKQQLEEYEKR 215 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 K +R R + + + + + +ED + + + I +E++K+I Sbjct: 216 KEILR--REEEIKQ-QNQEREKQINEDFEKRNQEKL-----KREEEIKQQNQEREKQI 265 >gi|47212254|emb|CAF93167.1| unnamed protein product [Tetraodon nigroviridis] Length = 223 Score = 38.1 bits (88), Expect = 0.57, Method: Composition-based stats. Identities = 10/34 (29%), Positives = 16/34 (47%) Query: 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSP 35 ++DL +K M +S L+ D + R SP Sbjct: 28 EDIVDLDQVKTDMAAVLSALQDDFTRSLSLRTSP 61 >gi|189240467|ref|XP_966429.2| PREDICTED: similar to lethal with a checkpoint kinase CG4943-PA isoform 1 [Tribolium castaneum] Length = 1879 Score = 38.1 bits (88), Expect = 0.58, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 12/86 (13%) Query: 113 ALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKAS-EDM----VASLENDIQKITDS 167 L K+ + K ++R+ +D+LKK K AS E + LE I + + Sbjct: 744 ELDKIKSKEMNEFKEKFAHLRQKEVDYLKKYHKDEVASLEKSYSCKIRELEARIDSLREE 803 Query: 168 TIKNID-------SFFEEKKKEIMHF 186 I S +EK++ I Sbjct: 804 YEAKIKTLSDSNMSLLQEKEQRIHEL 829 >gi|206889680|ref|YP_002249549.1| chaperone protein DnaK [Thermodesulfovibrio yellowstonii DSM 11347] gi|226738190|sp|B5YH59|DNAK_THEYD RecName: Full=Chaperone protein DnaK; AltName: Full=HSP70; AltName: Full=Heat shock 70 kDa protein; AltName: Full=Heat shock protein 70 gi|206741618|gb|ACI20675.1| chaperone protein DnaK [Thermodesulfovibrio yellowstonii DSM 11347] Length = 632 Score = 38.1 bits (88), Expect = 0.59, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 8/75 (10%) Query: 97 QVLRIPVP-ETTEERRLALVKVAHAYAEKS--KISVRNIRRDGMDHLKKSRKS-----GK 148 Q +RI +EE +++ A A+AE+ K + R + + + K+ + Sbjct: 492 QSIRITASSGLSEEEIKKMIREAEAHAEEDRRKKQIAEARNEADNMIYTVEKTLRDMGDR 551 Query: 149 ASEDMVASLENDIQK 163 SED +E I+K Sbjct: 552 ISEDERKRIEEAIEK 566 >gi|75911009|ref|YP_325305.1| WD-40 repeat-containing protein [Anabaena variabilis ATCC 29413] gi|75704734|gb|ABA24410.1| WD-40 repeat-containing protein [Anabaena variabilis ATCC 29413] Length = 1477 Score = 38.1 bits (88), Expect = 0.60, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 9/75 (12%) Query: 105 ETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKI 164 T++ L A+ +++ I V N + + + KK+ +D V ++ KI Sbjct: 504 ANTQKEAKELTDKANQRVKEANIQVANTKEEAKNRTKKA-------DDDVRLALENLGKI 556 Query: 165 TDSTIKNIDSFFEEK 179 T ID K Sbjct: 557 TKQ--AKIDKETAAK 569 >gi|195650637|gb|ACG44786.1| hypothetical protein [Zea mays] Length = 56 Score = 38.1 bits (88), Expect = 0.64, Method: Composition-based stats. Identities = 14/36 (38%), Positives = 21/36 (58%) Query: 37 MLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD 72 MLD + VE V LN++A V+VL+ L V ++ Sbjct: 1 MLDHIMVENASVKVALNRIAVVSVLDAHTLSVMSYE 36 >gi|149182492|ref|ZP_01860966.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. SG-1] gi|148849823|gb|EDL63999.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. SG-1] Length = 706 Score = 37.7 bits (87), Expect = 0.69, Method: Composition-based stats. Identities = 26/168 (15%), Positives = 57/168 (33%), Gaps = 26/168 (15%) Query: 19 SFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDK----- 73 L++ + ++GR+ +LD + S L+Q A + + ++ DK Sbjct: 518 EILEEALQQAKSGRMH--ILDSMLSTISESRSKLSQYA----PKILTMHINP-DKIRDVI 570 Query: 74 -EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 + + I E+ + ++ +G V + K A E VR + Sbjct: 571 GPSGKQINKIIEETGVKIDIEQDGSVF-------ISSTDEEMNKKAKKIIEDI---VREV 620 Query: 133 R--RDGMDHLKKSRKSGKASE-DMVASLENDIQKITDSTIKNIDSFFE 177 + + +K+ K G E I ++ + I ++ Sbjct: 621 EVGQLYLGKVKRIEKFGAFVEIFNGKDGLVHISELAEERIGKVEDVVS 668 >gi|47220785|emb|CAF99992.1| unnamed protein product [Tetraodon nigroviridis] Length = 705 Score = 37.7 bits (87), Expect = 0.72, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 5/80 (6%) Query: 102 PVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDI 161 P+ E EE + + + YA++ K + + I++ D LK +K+ K D+ L++ + Sbjct: 7 PLQEQIEEWKRGVNTLDKDYAKEFKKARQEIKKKSSDTLKLQKKAKKGRGDIQPQLDSAM 66 Query: 162 QKITDSTIKNIDSFFEEKKK 181 Q ++D I EE +K Sbjct: 67 QDVSDKYI-----LLEETEK 81 >gi|268558822|ref|XP_002637402.1| C. briggsae CBR-GEI-6 protein [Caenorhabditis briggsae] Length = 1139 Score = 37.7 bits (87), Expect = 0.76, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 21/98 (21%) Query: 97 QVLRIPVPETTEERRLALVKVAHAYAEKSKI-SVRNIRRDGMDHLKKSR----KSGKASE 151 Q + V + ER A++K AE+ + +V+N R MD + ++ + + Sbjct: 515 QTITRQVRKMEHERDEAMIK--KKKAEEERDEAVKN--RKEMDKVAQTLGVECDNARYER 570 Query: 152 DMVA----SLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 D + + QK+T EK+KE++ Sbjct: 571 DTFKASMDRQKKENQKLT--------QSLAEKEKELLQ 600 >gi|194226776|ref|XP_001500252.2| PREDICTED: myosin, heavy chain 9, non-muscle [Equus caballus] Length = 1862 Score = 37.7 bits (87), Expect = 0.84, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 23/52 (44%) Query: 113 ALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKI 164 K A EK+K ++ N R + + +K + SE +E +Q++ Sbjct: 1206 EQTKRVKANLEKAKQTLENERGELANEVKALLQGKGDSEHKRKRVEAQLQEL 1257 >gi|160425231|ref|NP_001104237.1| myosin-9 [Canis lupus familiaris] gi|122135145|sp|Q258K2|MYH9_CANFA RecName: Full=Myosin-9; AltName: Full=Myosin heavy chain 9; AltName: Full=Myosin heavy chain, non-muscle IIa; AltName: Full=Non-muscle myosin heavy chain IIa; Short=NMMHC II-a; Short=NMMHC-IIA gi|89994139|emb|CAJ31056.1| myosin, heavy polypeptide 9, non-muscle [Canis lupus familiaris] Length = 1960 Score = 37.3 bits (86), Expect = 0.89, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 24/58 (41%) Query: 113 ALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIK 170 K A EK+K ++ N R + + +K ++ SE E +Q++ + Sbjct: 1206 EQTKRVKANLEKAKQTLENERGELANEVKVLQQGKGDSEHKRKKAEAQLQELQVKFTE 1263 >gi|19114238|ref|NP_593326.1| N-acetyltransferase Nat10 (predicted) [Schizosaccharomyces pombe 972h-] gi|3219939|sp|P87115|YDK9_SCHPO RecName: Full=UPF0202 protein C20G8.09c gi|2094864|emb|CAB08603.1| N-acetyltransferase Nat10 (predicted) [Schizosaccharomyces pombe] Length = 1033 Score = 37.3 bits (86), Expect = 0.98, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 55/149 (36%), Gaps = 34/149 (22%) Query: 16 DTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEM 75 TI L+K+ +P NQ+ + V + + + D+ Sbjct: 878 KTIDTLEKEFN-----------------------LPSNQLLAMLVKLSKKI-MKCIDEIE 913 Query: 76 VASVERGIHESNLGLNPIVEGQVLRIP-VPETTEERRLALVKVAHAYAEKSKISVRNIRR 134 +E LG N E ++P + L A+++ +++R +R Sbjct: 914 TKDIEEE-----LGSNKKTESSNSKLPEFTPLQQSLEEEL----QEGADEAMLALREKQR 964 Query: 135 DGMDHLKKSRKSGKASEDMVASLENDIQK 163 + ++ + + + + +E+ + EN IQK Sbjct: 965 ELINAIDLEKYAIRGNEEDWKAAENQIQK 993 >gi|294882655|ref|XP_002769786.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] gi|239873535|gb|EER02504.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] Length = 756 Score = 37.3 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 9/84 (10%) Query: 100 RIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLEN 159 R + ++ E A++ + + E+++ V RR +H+ G+ ED + Sbjct: 615 RTKLEKSIEASEKAML-LVKRWLEEARRDVDEARRLAGEHVDA---DGQIGEDDEKDIRK 670 Query: 160 DIQKITDSTIKNIDSFFEEKKKEI 183 IQ D E K KE+ Sbjct: 671 VIQDEKDRL-----EAAEGKVKEL 689 >gi|13620252|emb|CAC36436.1| coagulase [Staphylococcus aureus] Length = 461 Score = 37.3 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 11/75 (14%) Query: 102 PVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDI 161 V T E + K E+ + +VR ++ +K K SED ++ Sbjct: 106 SVYNLTMEEYNEISKSLKDAEEEFRKNVREVQ-------EKEVKLKTYSEDEEEKATKEV 158 Query: 162 QKITDSTIKNIDSFF 176 + + +D+ + Sbjct: 159 YDL----VAEVDTIY 169 >gi|161722697|ref|YP_001586274.1| hypothetical protein pMV158_p4 [Streptococcus agalactiae] gi|130889|sp|P13925|PRE_STRAG RecName: Full=Plasmid recombination enzyme; AltName: Full=Mobilization protein gi|46666|emb|CAA33713.1| unnamed protein product [Streptococcus agalactiae] Length = 494 Score = 37.3 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +R+ + LKK S K ED ++ LE + K T IK IDS E+ E+ Sbjct: 257 LRKQYQEELKKLESSKKPLEDDLSHLEELLDKKTKEYIK-IDSEASERASEL 307 >gi|118087912|ref|XP_419428.2| PREDICTED: similar to Jun dimerization protein p21SNFT [Gallus gallus] Length = 134 Score = 37.3 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 2/70 (2%) Query: 112 LALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKN 171 K EK++++ + R+ K + ++ E SL+ +I K+TD K+ Sbjct: 41 EEDDKKVRRR-EKNRVAAQRSRKKQTQKADKLHEEYESLEQENTSLKKEIGKLTDEM-KH 98 Query: 172 IDSFFEEKKK 181 + ++ +K Sbjct: 99 LSEVLKDHEK 108 >gi|150041|gb|AAA25387.1| mobilization peptide [Plasmid pMV158] Length = 494 Score = 37.3 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +R+ + LKK S K ED ++ LE + K T IK IDS E+ E+ Sbjct: 257 LRKQYQEELKKLESSKKPLEDDLSHLEELLDKKTKEYIK-IDSEASERASEL 307 >gi|206900328|ref|YP_002250664.1| chromosome segregation SMC protein, putative [Dictyoglomus thermophilum H-6-12] gi|206739431|gb|ACI18489.1| chromosome segregation SMC protein, putative [Dictyoglomus thermophilum H-6-12] Length = 1084 Score = 37.3 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 8/69 (11%) Query: 120 AYAEKSKISVRNIRRD---GMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFF 176 E K+ NIRR+ MD KK + G+ ++ + LE + QK+ + + Sbjct: 780 KALEDFKVEYENIRREKEIFMDENKKVLEEGERIKNEIKKLEREWQKLREEFV-----VL 834 Query: 177 EEKKKEIMH 185 EE+KK+I Sbjct: 835 EERKKDIKE 843 >gi|73981927|ref|XP_540379.2| PREDICTED: similar to laminin, beta 4 [Canis familiaris] Length = 1787 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%) Query: 107 TEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDI 161 T ER L VA AE ++ +R I D ++ + S + D + LE+ + Sbjct: 1715 TLERVERLKDVAGKLAEDTEDKIRRI-ADLEKKIQDLQLSRQEKADQLKQLEDQV 1768 >gi|159112177|ref|XP_001706318.1| Dynein heavy chain [Giardia lamblia ATCC 50803] gi|157434413|gb|EDO78644.1| Dynein heavy chain [Giardia lamblia ATCC 50803] Length = 1442 Score = 36.9 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 6/56 (10%) Query: 133 RRDGMDHLKKSR----KSGKASED--MVASLENDIQKITDSTIKNIDSFFEEKKKE 182 RR+ D +++ K K ED + + QKI D K D E +K+ Sbjct: 1118 RREIYDQIERLEQGNTKLEKTEEDVSELKKALVEQQKIVDERKKAADELLEVVEKD 1173 >gi|194332619|ref|NP_001123798.1| hypothetical protein LOC100170549 [Xenopus (Silurana) tropicalis] gi|189441913|gb|AAI67592.1| LOC100170549 protein [Xenopus (Silurana) tropicalis] Length = 1853 Score = 36.9 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 71/193 (36%), Gaps = 44/193 (22%) Query: 6 DLQNIKDRMGDTISFLKKDMMTLR-----TGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 + + K R+ D+ L++ + ++ G P ++LV QV N+++ Sbjct: 1554 NAKESKRRIEDSTEKLREFIKKIKDFLTEEG-ADPESIELVA----------RQVLNISL 1602 Query: 61 LEPRMLVVSVWD-KEMVASVERGIHESNLGLN--PIVEGQVLRIPVPETTEERRLALVKV 117 S D + +V ++ I NL + + +E A Sbjct: 1603 P------ASPGDIEALVNKIKESI--GNLSCTDEILTNTSEILATAKNLHKEAVEA---Q 1651 Query: 118 AHAYAEKSKIS-----VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNI 172 A A A + IS ++ K +K+ ++ +D+ + +E +Q +T Sbjct: 1652 AKAEAVSANISDAQALLQEAEAKAKSAEKALKKAKQSIKDVKSKVEQTMQTLT------- 1704 Query: 173 DSFFEEKKKEIMH 185 E+K+ +IM Sbjct: 1705 --GVEQKEMDIME 1715 >gi|295104851|emb|CBL02395.1| hypothetical protein [Faecalibacterium prausnitzii SL3/3] Length = 1683 Score = 36.9 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 31/96 (32%), Gaps = 19/96 (19%) Query: 95 EGQVLRIPVPETTEERRL----ALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKAS 150 EG + I V ++ R V++A A K+ + + S Sbjct: 969 EGSPIGIQVQAMIDDVREPTHDEYVELAKKTATYQKVL-----AQYTKKMSAIDSNKDLS 1023 Query: 151 EDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 ED + ++QK +D +K ++ Sbjct: 1024 EDEALKQKAEVQK-------ELDDAL---EKALLEV 1049 >gi|294938950|ref|XP_002782265.1| cAMP-dependent protein kinase catalytic subunit,, putative [Perkinsus marinus ATCC 50983] gi|239893793|gb|EER14060.1| cAMP-dependent protein kinase catalytic subunit,, putative [Perkinsus marinus ATCC 50983] Length = 661 Score = 36.9 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 9/84 (10%) Query: 100 RIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLEN 159 R + ++ E A++ + + E+++ V RR +H+ G+ ED + Sbjct: 466 RTKLEKSIEASEKAML-LVKRWLEEARRDVDGARRLAGEHVDA---DGQIGEDDEKDIRK 521 Query: 160 DIQKITDSTIKNIDSFFEEKKKEI 183 IQ D E K KE+ Sbjct: 522 VIQDEKDRL-----EAAEGKVKEL 540 >gi|189201017|ref|XP_001936845.1| conserved hypothetical protein [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187983944|gb|EDU49432.1| conserved hypothetical protein [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 598 Score = 36.9 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 10/77 (12%) Query: 95 EGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN----IRRDGMDHLKKSRKSGKAS 150 E + R+ EER AE ++ + R R + L++ RK + Sbjct: 418 EAETARLKAQVEAEEREQ------KRQAEAARKARRKQEQEAERKTLQFLEQERKQKELE 471 Query: 151 EDMVASLENDIQKITDS 167 E E ++ K T+ Sbjct: 472 EKERRRKEAEVDKETER 488 >gi|229825233|ref|ZP_04451302.1| hypothetical protein GCWU000182_00585 [Abiotrophia defectiva ATCC 49176] gi|229790605|gb|EEP26719.1| hypothetical protein GCWU000182_00585 [Abiotrophia defectiva ATCC 49176] Length = 178 Score = 36.9 bits (85), Expect = 1.3, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 7/75 (9%) Query: 106 TTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKIT 165 T E L K E K+ N RR+ + +K++R+ G SE+ D Q+ Sbjct: 28 MTYEGLQELEKEL----EHLKV---NRRREIAEKIKEAREQGDLSENAEYDAAKDEQRDI 80 Query: 166 DSTIKNIDSFFEEKK 180 ++ I+ I+ + + Sbjct: 81 EARIEEIEKILKNAE 95 >gi|261278376|ref|NP_001159727.1| calmodulin regulated spectrin-associated protein 1a [Danio rerio] Length = 1458 Score = 36.9 bits (85), Expect = 1.3, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 8/81 (9%) Query: 105 ETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKI 164 E ++R L+K AE+++ +R + + LK+ KA ED V E K Sbjct: 1144 ELAKKRAAFLLKQQRK-AEEAR--IRKQQLEAESELKRDEARRKAEEDRVRKEEE---KA 1197 Query: 165 TDSTIKNIDSFFEEKKKEIMH 185 IK + K++E++ Sbjct: 1198 RRELIKQ--EYLRRKQQELLE 1216 >gi|301757430|ref|XP_002914565.1| PREDICTED: myosin-9-like [Ailuropoda melanoleuca] gi|281351115|gb|EFB26699.1| hypothetical protein PANDA_002468 [Ailuropoda melanoleuca] Length = 1961 Score = 36.9 bits (85), Expect = 1.3, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 23/58 (39%) Query: 113 ALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIK 170 K A EK+K ++ N R + + +K + SE E +Q++ + Sbjct: 1206 EQTKRVKANLEKAKQTLENERGELANEVKVLLQGKGDSEHKRKKAEAQLQELQVKFTE 1263 >gi|147900646|ref|NP_001079627.1| heat shock 70kDa protein 9 (mortalin) [Xenopus laevis] gi|28277241|gb|AAH45259.1| MGC52616 protein [Xenopus laevis] Length = 670 Score = 36.9 bits (85), Expect = 1.3, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 15/93 (16%) Query: 97 QVLRIPVPETTEERRLALVKVAHAYAEKSK------ISVRNIRRDGMDHLKKSRKSGK-A 149 Q++ +++ +VK A YAE+ + +V N D K + Sbjct: 538 QIVIQSSGGLSKDDIENMVKNAEKYAEEDRRRKERVEAVNNAEGIIHDTESKMEEFKDQL 597 Query: 150 SEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 D L+ +I K + K +E Sbjct: 598 PADECNKLKEEISK--------VKELLARKDEE 622 >gi|253744076|gb|EET00332.1| Dynein heavy chain [Giardia intestinalis ATCC 50581] Length = 1375 Score = 36.9 bits (85), Expect = 1.3, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 6/56 (10%) Query: 133 RRDGMDHLKKSR----KSGKASED--MVASLENDIQKITDSTIKNIDSFFEEKKKE 182 RR+ D +++ K K ED + + QKI D K D E +K+ Sbjct: 1076 RREIYDQIERLEQGNTKLEKTEEDVSELKKALVEQQKIVDERKKAADELLEVVEKD 1131 >gi|146296476|ref|YP_001180247.1| seryl-tRNA synthetase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|166201242|sp|A4XJH1|SYS_CALS8 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec) synthetase gi|145410052|gb|ABP67056.1| seryl-tRNA synthetase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 420 Score = 36.9 bits (85), Expect = 1.3, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 15/95 (15%) Query: 89 GLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGK 148 GLN + P+ E E+RR L +V A I+ + K +K GK Sbjct: 17 GLNKRN-KDISIAPILELDEKRRKLLAEVEKMKA---------IQNQKSKEIPKLKKEGK 66 Query: 149 ASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 L N++++++D IK +DS +E + EI Sbjct: 67 ----DTTELMNELKELSDK-IKELDSQVKEVEDEI 96 >gi|553596|gb|AAA59888.1| cellular myosin heavy chain [Homo sapiens] Length = 1337 Score = 36.9 bits (85), Expect = 1.3, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 23/52 (44%) Query: 113 ALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKI 164 K A EK+K ++ N R + + +K + SE +E +Q++ Sbjct: 1206 EQTKRVKANLEKAKQTLENERGELANEVKVLLQGKGDSEHKRKKVEAQLQEL 1257 >gi|308161971|gb|EFO64400.1| Dynein heavy chain [Giardia lamblia P15] Length = 1382 Score = 36.9 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 6/56 (10%) Query: 133 RRDGMDHLKKSR----KSGKASED--MVASLENDIQKITDSTIKNIDSFFEEKKKE 182 RR+ D +++ K K ED + + QKI D K D E +K+ Sbjct: 1076 RREIYDQIERLEQGNTKLEKTEEDVSELKKALVEQQKIVDERKKAADELLEVVEKD 1131 >gi|147792206|emb|CAN68572.1| hypothetical protein VITISV_023885 [Vitis vinifera] Length = 674 Score = 36.9 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 20/95 (21%) Query: 106 TTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKS--------------RKSGKASE 151 EE R V++ +E I+VR + D LK+ K +A+E Sbjct: 514 NNEELR---VQLVRVESEL--IAVRKVIADAKKLLKELEEMMEATKVEACQNEKENEAAE 568 Query: 152 DMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 + +I ++ ++ + E K+KE+ Sbjct: 569 AKCKDADQEIDQL-KKELEELRVSSEAKRKELEEL 602 >gi|148228693|ref|NP_001080166.1| heat shock 70kDa protein 9 (mortalin) [Xenopus laevis] gi|28175297|gb|AAH45130.1| Hspa9b protein [Xenopus laevis] Length = 670 Score = 36.9 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 15/93 (16%) Query: 97 QVLRIPVPETTEERRLALVKVAHAYAEKSK------ISVRNIRRDGMDHLKKSRKSGK-A 149 Q++ +++ +VK A YAE+ + +V N D K + Sbjct: 538 QIVIQSSGGLSKDDIENMVKNAEKYAEEDRRRKEQVEAVNNAEGIIHDTESKMEEFKDQL 597 Query: 150 SEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 D L+ +I K + K +E Sbjct: 598 PADECNKLKEEISK--------VKELLARKDEE 622 >gi|221486144|gb|EEE24414.1| conserved hypothetical protein [Toxoplasma gondii GT1] Length = 1251 Score = 36.9 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 24/49 (48%) Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 D + KK +K A+ D + E I+K+TD+ ++ K+KE Sbjct: 996 NDLSEENKKLKKDLSAAADDKEAKEKQIKKLTDAQARDQQEIAAIKQKE 1044 >gi|29436380|gb|AAH49849.1| MYH9 protein [Homo sapiens] Length = 1374 Score = 36.9 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 23/52 (44%) Query: 113 ALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKI 164 K A EK+K ++ N R + + +K + SE +E +Q++ Sbjct: 1206 EQTKRVKANLEKAKQTLENERGELANEVKVLLQGKGDSEHKRKKVEAQLQEL 1257 >gi|115712727|ref|XP_780688.2| PREDICTED: similar to Adenylate cyclase 2 [Strongylocentrotus purpuratus] gi|115975660|ref|XP_001195151.1| PREDICTED: similar to Adenylate cyclase 2 [Strongylocentrotus purpuratus] Length = 889 Score = 36.9 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 25/46 (54%) Query: 47 GSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNP 92 G+ P Q+A + V + L VS+++ + SV +GI+ N L P Sbjct: 310 GADKPFQQIATMPVPKSVGLTVSIYEHSVTRSVAKGIYAMNACLVP 355 >gi|325116251|emb|CBZ51804.1| GF13052, related [Neospora caninum Liverpool] Length = 1235 Score = 36.9 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 24/49 (48%) Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 D +D KK +K + D + E I+K+TD+ ++ + + KE Sbjct: 979 NDLVDESKKLKKDLNVTADDKEAKEKQIKKLTDAQARDQEEIAAIRLKE 1027 >gi|237834545|ref|XP_002366570.1| hypothetical protein TGME49_039300 [Toxoplasma gondii ME49] gi|211964234|gb|EEA99429.1| hypothetical protein TGME49_039300 [Toxoplasma gondii ME49] gi|221503641|gb|EEE29332.1| conserved hypothetical protein [Toxoplasma gondii VEG] Length = 1251 Score = 36.9 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 24/49 (48%) Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 D + KK +K A+ D + E I+K+TD+ ++ K+KE Sbjct: 996 NDLSEENKKLKKDLSAAADDKEAKEKQIKKLTDAQARDQQEIAAIKQKE 1044 >gi|170106955|ref|XP_001884688.1| predicted protein [Laccaria bicolor S238N-H82] gi|164640250|gb|EDR04516.1| predicted protein [Laccaria bicolor S238N-H82] Length = 1567 Score = 36.5 bits (84), Expect = 1.5, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 6/61 (9%) Query: 126 KISVRNI---RRDGMDHLKKSRKSGKASEDMVASLENDIQKITDST---IKNIDSFFEEK 179 K +RN R+ +D L+++ + ++ + E IQK+ ++ + K Sbjct: 1285 KQHLRNRLQQRKFELDSLERAYRKTTTNKSQIKRKEPGIQKLAKKYNDICAELEKMIKRK 1344 Query: 180 K 180 + Sbjct: 1345 E 1345 >gi|315134550|dbj|BAJ46128.1| outer-arm dynein beta chain [Giardia intestinalis] Length = 1343 Score = 36.5 bits (84), Expect = 1.5, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 6/56 (10%) Query: 133 RRDGMDHLKKSR----KSGKASED--MVASLENDIQKITDSTIKNIDSFFEEKKKE 182 RR+ D +++ K K ED + + QKI D K D E +K+ Sbjct: 1076 RREIYDQIERLEQGNTKLEKTEEDVSELKKALVEQQKIVDERKKAADELLEVVEKD 1131 >gi|327259046|ref|XP_003214349.1| PREDICTED: zinc finger protein 238.2-like [Anolis carolinensis] Length = 617 Score = 36.5 bits (84), Expect = 1.5, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 43/99 (43%), Gaps = 20/99 (20%) Query: 108 EERRLALVKVAHAYAEKSKI-------SVRNIRRDGMDHLKKSRKS-GKASED--MVASL 157 + ++K + EK I + ++R++ + L + +K + ED + S Sbjct: 4 RDMMRDMMKEVYRMQEKQDILQKMVQEQMSDMRKEWKEDLGEMKKEMNQIQEDLRELRSE 63 Query: 158 ENDIQKITDSTIKNIDSF------FEEKKKEI----MHF 186 + +I+KI ++T K I E K++E+ M F Sbjct: 64 KKEIRKIQETTQKEIKEIYERNRKMERKQEELEAKEMEF 102 >gi|28465343|dbj|BAC57468.1| pyruvate dehydrogenase E1alpha subunit [Beta vulgaris] Length = 395 Score = 36.5 bits (84), Expect = 1.5, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 3/53 (5%) Query: 125 SKISVRNIR--RDGMDHLKKSRKSGKA-SEDMVASLENDIQKITDSTIKNIDS 174 ++ + IR RD ++ ++K + E + +E +I+K D I Sbjct: 308 TRDEISGIRQERDPIERVRKLLLAHDIAGEKELKDIEKEIRKEVDEAIAKAKE 360 >gi|28465345|dbj|BAC57469.1| pyruvate dehydrogenase E1 alpha subunit [Beta vulgaris] Length = 395 Score = 36.5 bits (84), Expect = 1.5, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 3/53 (5%) Query: 125 SKISVRNIR--RDGMDHLKKSRKSGKA-SEDMVASLENDIQKITDSTIKNIDS 174 ++ + IR RD ++ ++K + E + +E +I+K D I Sbjct: 308 TRDEISGIRQERDPIERVRKLLLAHDIAGEKELKDIEKEIRKEVDEAIAKAKE 360 >gi|284810433|gb|ADB96016.1| intraconoid microtubule associated protein 1 [Toxoplasma gondii] Length = 1231 Score = 36.5 bits (84), Expect = 1.5, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 24/49 (48%) Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 D + KK +K A+ D + E I+K+TD+ ++ K+KE Sbjct: 976 NDLSEENKKLKKDLSAAADDKEAKEKQIKKLTDAQARDQQEIAAIKQKE 1024 >gi|94499080|ref|ZP_01305618.1| transposase IS4 family protein [Oceanobacter sp. RED65] gi|94501335|ref|ZP_01307856.1| transposase IS4 family protein [Oceanobacter sp. RED65] gi|94426606|gb|EAT11593.1| transposase IS4 family protein [Oceanobacter sp. RED65] gi|94428712|gb|EAT13684.1| transposase IS4 family protein [Oceanobacter sp. RED65] Length = 523 Score = 36.5 bits (84), Expect = 1.5, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 25/59 (42%), Gaps = 1/59 (1%) Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 E+ + ++ + + + KK K+ E+ + I+ ++D+ ID F + Sbjct: 159 KELEEKRAKIKRLIKHHITEHKKIDKNESLGEERAKCAQQAIKTLSDAY-DKIDKFLKT 216 >gi|157116418|ref|XP_001658467.1| hypothetical protein AaeL_AAEL007573 [Aedes aegypti] gi|108876491|gb|EAT40716.1| conserved hypothetical protein [Aedes aegypti] Length = 543 Score = 36.5 bits (84), Expect = 1.6, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%) Query: 138 DHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 +KK ++ G SED + E D+ D + ID K+KE+M Sbjct: 68 KLIKKQKEDGD-SEDEAENREEDVLDQLDE--QLIDKPKTNKEKELMSL 113 >gi|291389910|ref|XP_002711459.1| PREDICTED: myosin heavy chain [Oryctolagus cuniculus] Length = 1962 Score = 36.5 bits (84), Expect = 1.6, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 23/52 (44%) Query: 113 ALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKI 164 K A EK+K ++ + R + + +K ++ SE E +Q++ Sbjct: 1206 EQTKRVKANLEKAKQTLEHERGELANEVKALQQGKGDSEHKRKKAEAQLQEL 1257 >gi|126339824|ref|XP_001376000.1| PREDICTED: similar to myosin, heavy chain 9, non-muscle [Monodelphis domestica] Length = 1960 Score = 36.5 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 23/52 (44%) Query: 113 ALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKI 164 K A EK+K ++ + R + + +K + SE +E +Q++ Sbjct: 1206 EQTKRVKANLEKAKQALESERAELSNEVKALLQGKGDSEHKRKKVETQLQEL 1257 >gi|312222629|dbj|BAJ33527.1| outer-arm dynein beta [Giardia intestinalis] Length = 2565 Score = 36.5 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 6/56 (10%) Query: 133 RRDGMDHLKKSR----KSGKASED--MVASLENDIQKITDSTIKNIDSFFEEKKKE 182 RR+ D +++ K K ED + + QKI D K D E +K+ Sbjct: 1076 RREIYDQIERLEQGNTKLEKTEEDVSELKKALVEQQKIVDERKKAADELLEVVEKD 1131 >gi|74180977|dbj|BAE27768.1| unnamed protein product [Mus musculus] Length = 2031 Score = 36.5 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 23/52 (44%) Query: 113 ALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKI 164 K A EK+K ++ N R + + +K + SE +E +Q++ Sbjct: 1277 EQTKRVKATLEKAKQTLENERGELANEVKALLQGKGDSEHKRKKVEAQLQEL 1328 >gi|94500088|ref|ZP_01306622.1| transposase IS4 family protein [Oceanobacter sp. RED65] gi|94427661|gb|EAT12637.1| transposase IS4 family protein [Oceanobacter sp. RED65] Length = 523 Score = 36.5 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 25/59 (42%), Gaps = 1/59 (1%) Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 E+ + ++ + + + KK K+ E+ + I+ ++D+ ID F + Sbjct: 159 KELEEKRAKIKRLIKHHITEHKKIDKNESLGEERAKCAQQAIKTLSDAY-DKIDKFLKT 216 >gi|320592982|gb|EFX05391.1| WD repeat protein [Grosmannia clavigera kw1407] Length = 1507 Score = 36.5 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 36/226 (15%), Positives = 72/226 (31%), Gaps = 59/226 (26%) Query: 3 QVIDLQNIKDRMGDTISFLKKDMMTLR----TGRVS-PSMLD-------LVKVEAYGSH- 49 + +++ R + + + LR +G +D V + A GS Sbjct: 1293 DPFNFADVESRWQRSDAHHEDKFRELRRALGSGAADGSGAVDLDAIGATPVTMAASGSEG 1352 Query: 50 ---VPLNQVANVTVL-EPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPE 105 L+Q+A V R + + + ++ R + +P GQ P P+ Sbjct: 1353 ATTTTLSQLALVIPRAGGRFVELRMHSATSRKAITRAVQH-----SPQFRGQQ---PQPD 1404 Query: 106 TTEERRLALVKVAHAYA--EKS---------------------KISVRNIRRDGMDHLKK 142 +E LV + E + + +R + Sbjct: 1405 PDDE----LVLLVRMGGVHEGATEAAAAAVERARRVSDLANGWRAQIRRATARRQKTHQT 1460 Query: 143 SRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE---IMH 185 RK G D + L+ D+ + D + +ID+ +KE ++ Sbjct: 1461 WRKDGSVRPDDLHRLDRDLLRGQDKHLAHIDTV----EKEAVRLLE 1502 >gi|297809193|ref|XP_002872480.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297318317|gb|EFH48739.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 336 Score = 36.2 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 33/76 (43%) Query: 107 TEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITD 166 + + L K+ + E K + N ++ + +K+ +A + N+IQK++ Sbjct: 246 ISQMKKELEKLHNEMLEGIKEKISNQLKESLKDVKEQLAKAQAEREETEKKMNEIQKLSS 305 Query: 167 STIKNIDSFFEEKKKE 182 I+ + + +KE Sbjct: 306 DEIRRLREQLNKAEKE 321 >gi|307707928|ref|ZP_07644403.1| PspA [Streptococcus mitis NCTC 12261] gi|307615993|gb|EFN95191.1| PspA [Streptococcus mitis NCTC 12261] Length = 1088 Score = 36.2 bits (83), Expect = 2.0, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 24/52 (46%), Gaps = 7/52 (13%) Query: 138 DHLKKSRKSGKASED-------MVASLENDIQKITDSTIKNIDSFFEEKKKE 182 +K K+ + ++D ++ +++ K+TD K +D K+KE Sbjct: 330 KAVKAIEKAKEVAQDAFDKAASDTQAVADELNKLTDEYNKALDEVKAAKEKE 381 >gi|332265086|ref|XP_003281557.1| PREDICTED: myosin-11 [Nomascus leucogenys] Length = 1358 Score = 36.2 bits (83), Expect = 2.0, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 9/100 (9%) Query: 91 NPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSR-KSGKA 149 +G + + V + R A E K R ++ + LK+ K + Sbjct: 809 TKTNDGLTVCVQVKPLLQVTRQEEEMQAK-EDELQKTKER--QQKAENELKELEQKHSQL 865 Query: 150 SEDMVASLENDIQKITDSTIKNIDSF---FEEKKKEIMHF 186 +E L+ +Q T+ + KK+E+ Sbjct: 866 TE-EKNLLQEQLQAETELY-AEAEEMRVRLAAKKQELEEI 903 >gi|154278942|ref|XP_001540284.1| predicted protein [Ajellomyces capsulatus NAm1] gi|150412227|gb|EDN07614.1| predicted protein [Ajellomyces capsulatus NAm1] Length = 749 Score = 36.2 bits (83), Expect = 2.0, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%) Query: 127 ISVRNIRRDGMD-HLKKSRKSGKASEDMVASLENDIQKITDSTIKN 171 + R +RR+ + +KKS K S D V +D++K D +K Sbjct: 37 VKTRKLRREAKESDVKKSNSDVKKSNDDVKKSNDDVKKSNDD-VKK 81 >gi|227889913|ref|ZP_04007718.1| conserved hypothetical protein [Lactobacillus johnsonii ATCC 33200] gi|227849357|gb|EEJ59443.1| conserved hypothetical protein [Lactobacillus johnsonii ATCC 33200] Length = 803 Score = 36.2 bits (83), Expect = 2.1, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 4/78 (5%) Query: 106 TTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKIT 165 T++ + L+ A+ + ++ N + D +K++ G ED+ + + + Sbjct: 564 LTDQMKQNLIDQVDQVADNATKAINNAQ--TNDDVKEAETKGL--EDINSIQVPSLVESK 619 Query: 166 DSTIKNIDSFFEEKKKEI 183 D IK ID E+K EI Sbjct: 620 DDAIKEIDDALEKKTDEI 637 >gi|195326267|ref|XP_002029851.1| GM25136 [Drosophila sechellia] gi|194118794|gb|EDW40837.1| GM25136 [Drosophila sechellia] Length = 133 Score = 36.2 bits (83), Expect = 2.1, Method: Composition-based stats. Identities = 4/34 (11%), Positives = 18/34 (52%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVS 34 + ++++ + +M ++ +K+D + + R + Sbjct: 71 LREILNFDGLNSQMQKSVMQMKEDFVKHLSLRST 104 >gi|307191186|gb|EFN74883.1| Serine proteinase stubble [Camponotus floridanus] Length = 1043 Score = 36.2 bits (83), Expect = 2.2, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 40/106 (37%), Gaps = 16/106 (15%) Query: 50 VPLNQVAN---VTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQ----VLRIP 102 VP +Q A V + L + + + +E E I +G V+R+P Sbjct: 419 VPYDQCATNNHVGRKDDLYLAIDP--RNLDKDIEAETVEV-----VITDGNGTMSVVRVP 471 Query: 103 VPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGK 148 E+ AE +K++ RN RRD LKK K + Sbjct: 472 KGANETEQIEQARNEQTKEAE-AKVTKRN-RRDVKHALKKDNKQIE 515 >gi|6981236|ref|NP_037326.1| myosin-9 [Rattus norvegicus] gi|13431671|sp|Q62812|MYH9_RAT RecName: Full=Myosin-9; AltName: Full=Cellular myosin heavy chain, type A; AltName: Full=Myosin heavy chain 9; AltName: Full=Myosin heavy chain, non-muscle IIa; AltName: Full=Non-muscle myosin heavy chain A; Short=NMMHC-A; AltName: Full=Non-muscle myosin heavy chain IIa; Short=NMMHC II-a; Short=NMMHC-IIA gi|967249|gb|AAA74950.1| nonmuscle myosin heavy chain-A [Rattus norvegicus] Length = 1961 Score = 36.2 bits (83), Expect = 2.2, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 23/52 (44%) Query: 113 ALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKI 164 K A EK+K ++ N R + + +K + SE +E +Q++ Sbjct: 1206 EQTKRVKATLEKAKQTLENERGELANEVKALLQGKGDSEHKRKKVEAQLQEL 1257 >gi|149066032|gb|EDM15905.1| myosin, heavy polypeptide 9, non-muscle [Rattus norvegicus] Length = 1960 Score = 36.2 bits (83), Expect = 2.2, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 23/52 (44%) Query: 113 ALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKI 164 K A EK+K ++ N R + + +K + SE +E +Q++ Sbjct: 1206 EQTKRVKATLEKAKQTLENERGELANEVKALLQGKGDSEHKRKKVEAQLQEL 1257 >gi|188996676|ref|YP_001930927.1| hypothetical protein SYO3AOP1_0740 [Sulfurihydrogenibium sp. YO3AOP1] gi|188931743|gb|ACD66373.1| hypothetical protein SYO3AOP1_0740 [Sulfurihydrogenibium sp. YO3AOP1] Length = 439 Score = 36.2 bits (83), Expect = 2.2, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 4/59 (6%) Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDI-QKITD--STIKNIDS-FFEEKKK 181 + + N + LKK + G ED A+++ + Q+ + ID E K+K Sbjct: 14 VGLANAQTIENPILKKLVEKGILKEDEAAAIDEQLAQEEAEKAKYQAEIDKTAMEAKEK 72 >gi|114326446|ref|NP_071855.2| myosin-9 isoform 1 [Mus musculus] gi|205371802|sp|Q8VDD5|MYH9_MOUSE RecName: Full=Myosin-9; AltName: Full=Cellular myosin heavy chain, type A; AltName: Full=Myosin heavy chain 9; AltName: Full=Myosin heavy chain, non-muscle IIa; AltName: Full=Non-muscle myosin heavy chain A; Short=NMMHC-A; AltName: Full=Non-muscle myosin heavy chain IIa; Short=NMMHC II-a; Short=NMMHC-IIA gi|74180962|dbj|BAE27761.1| unnamed protein product [Mus musculus] gi|74180967|dbj|BAE27763.1| unnamed protein product [Mus musculus] gi|74180971|dbj|BAE27765.1| unnamed protein product [Mus musculus] gi|74180973|dbj|BAE27766.1| unnamed protein product [Mus musculus] gi|74180975|dbj|BAE27767.1| unnamed protein product [Mus musculus] gi|74180985|dbj|BAE27772.1| unnamed protein product [Mus musculus] gi|74180987|dbj|BAE27773.1| unnamed protein product [Mus musculus] gi|74180995|dbj|BAE27776.1| unnamed protein product [Mus musculus] gi|74180997|dbj|BAE27777.1| unnamed protein product [Mus musculus] gi|74180999|dbj|BAE27778.1| unnamed protein product [Mus musculus] gi|74181014|dbj|BAE27783.1| unnamed protein product [Mus musculus] gi|74181018|dbj|BAE27785.1| unnamed protein product [Mus musculus] gi|74181123|dbj|BAE27829.1| unnamed protein product [Mus musculus] gi|74184545|dbj|BAE27894.1| unnamed protein product [Mus musculus] gi|74184580|dbj|BAE27906.1| unnamed protein product [Mus musculus] gi|123233477|emb|CAM23428.1| myosin, heavy polypeptide 9, non-muscle [Mus musculus] gi|148697703|gb|EDL29650.1| myosin, heavy polypeptide 9, non-muscle [Mus musculus] Length = 1960 Score = 36.2 bits (83), Expect = 2.2, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 23/52 (44%) Query: 113 ALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKI 164 K A EK+K ++ N R + + +K + SE +E +Q++ Sbjct: 1206 EQTKRVKATLEKAKQTLENERGELANEVKALLQGKGDSEHKRKKVEAQLQEL 1257 >gi|17978023|emb|CAC85955.1| nonmuscle heavy chain myosin II-A [Mus musculus] Length = 1960 Score = 36.2 bits (83), Expect = 2.2, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 23/52 (44%) Query: 113 ALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKI 164 K A EK+K ++ N R + + +K + SE +E +Q++ Sbjct: 1206 EQTKRVKATLEKAKQTLENERGELANEVKALLQGKGDSEHKRKKVEAQLQEL 1257 >gi|300867568|ref|ZP_07112218.1| hypothetical protein OSCI_3410039 [Oscillatoria sp. PCC 6506] gi|300334456|emb|CBN57388.1| hypothetical protein OSCI_3410039 [Oscillatoria sp. PCC 6506] Length = 989 Score = 36.2 bits (83), Expect = 2.2, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 29/67 (43%), Gaps = 4/67 (5%) Query: 120 AYAEKSKISVRNIRR---DGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFF 176 AE+++ + ++ + + +K + K+ +ED + E K+T ++ + Sbjct: 485 KKAEQAEQKMADVNQKAVEAQKQVKMAEKTRSFAEDQLKEAEAQ-SKLTQQEMQKANQEL 543 Query: 177 EEKKKEI 183 K E+ Sbjct: 544 AAAKTEL 550 >gi|297260956|ref|XP_001083662.2| PREDICTED: myosin-9-like [Macaca mulatta] Length = 1879 Score = 36.2 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 23/52 (44%) Query: 113 ALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKI 164 K A EK+K ++ N R + + +K + SE +E +Q++ Sbjct: 1125 EQTKRVKANLEKAKQTLENERGELANEVKVLLQGKGDSEHKRKKVEAQLQEL 1176 >gi|315052968|ref|XP_003175858.1| M protein repeat protein [Arthroderma gypseum CBS 118893] gi|311341173|gb|EFR00376.1| M protein repeat protein [Arthroderma gypseum CBS 118893] Length = 843 Score = 36.2 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 RR+ ++ +K+ + +D V LE +QK+ + ++ E+ ++ Sbjct: 770 ARREVVELMKEVE-EKRVGDDEVRKLEEQVQKLNERYQTTLEMLGEKSEQ 818 >gi|242029828|gb|ACS76941.1| gag protein [Human immunodeficiency virus 1] Length = 456 Score = 36.2 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 22/89 (24%) Query: 90 LNP----IVEG--QVLRIPVPET---TEERRLALVKVAHAYAEKSKISVRNIRRDGMDHL 140 LNP EG Q+++ +P TEE R VA Y +KI VR+ ++ +D + Sbjct: 31 LNPGLLETSEGCKQLIKQLLPALQTGTEELRSLYNTVATLYCVHAKIEVRDT-KEALDKI 89 Query: 141 KKSRKSGKASEDMVASLENDIQ--KITDS 167 E+ ++ +Q ++ D Sbjct: 90 ----------EEEQKQVQQKMQPTEMADK 108 >gi|327272416|ref|XP_003220981.1| PREDICTED: myosin-9-like [Anolis carolinensis] Length = 1960 Score = 36.2 bits (83), Expect = 2.4, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 22/58 (37%) Query: 113 ALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIK 170 K EK+K ++ + R + + +K + SE E +Q++ + Sbjct: 1206 EQTKRVKVSLEKAKQALESERAELANEVKVLLQFKGDSEHKRKRGETQLQELQVKFTE 1263 >gi|213138154|gb|ACJ44748.1| gag protein [Human immunodeficiency virus 1] Length = 491 Score = 36.2 bits (83), Expect = 2.4, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 17/91 (18%) Query: 90 LNP----IVEG--QVLRIPVPET---TEERRLALVKVAHAYAEKSKISVRNIRRDGMDHL 140 LNP +EG Q++R P TEE R VA Y ++I VR+ ++ +D + Sbjct: 46 LNPGLLETLEGCKQIIRQLQPALQTGTEELRSLFNTVATLYCVHARIEVRDT-KEALDKI 104 Query: 141 -----KKSRKSGKASEDMVASLEND--IQKI 164 K +K+ +A +D +N +Q + Sbjct: 105 EEEQNKSQQKTQQAKKDDGKISQNYPIVQNL 135 >gi|282919124|ref|ZP_06326859.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Staphylococcus aureus subsp. aureus C427] gi|282316934|gb|EFB47308.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Staphylococcus aureus subsp. aureus C427] Length = 932 Score = 35.8 bits (82), Expect = 2.5, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 6/51 (11%) Query: 131 NIRR-DGMDHL--KKSRKSGKASEDMVASLENDIQK---ITDSTIKNIDSF 175 NIR+ D ++++ KK G SED + S +QK I D Sbjct: 474 NIRKHDSVEYVFGKKLVNEGIISEDEMHSFIEQVQKELRQAHDKINKADKM 524 >gi|242029824|gb|ACS76939.1| gag protein [Human immunodeficiency virus 1] Length = 454 Score = 35.8 bits (82), Expect = 2.5, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 22/89 (24%) Query: 90 LNP----IVEG--QVLRIPVPET---TEERRLALVKVAHAYAEKSKISVRNIRRDGMDHL 140 LNP EG Q+++ +P TEE R VA Y +KI VR+ ++ +D + Sbjct: 29 LNPGLLETAEGCKQLIKQLLPALQTGTEELRSLYNTVATLYCVHAKIEVRDT-KEALDKI 87 Query: 141 KKSRKSGKASEDMVASLENDIQ--KITDS 167 E+ + +Q ++ D Sbjct: 88 ----------EEEQKQAQQKMQPTEMADK 106 >gi|148550593|ref|YP_001260032.1| pyruvate dehydrogenase (acetyl-transferring) [Sphingomonas wittichii RW1] gi|148503012|gb|ABQ71265.1| Pyruvate dehydrogenase (acetyl-transferring) [Sphingomonas wittichii RW1] Length = 360 Score = 35.8 bits (82), Expect = 2.5, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 26/38 (68%), Gaps = 1/38 (2%) Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKI 164 +VR+ + D ++HLK+ ++ +ED + +LE +I++I Sbjct: 296 QAVRD-KSDAIEHLKQELEAAGVTEDELKALEKEIRQI 332 >gi|148672868|gb|EDL04815.1| laminin, alpha 2, isoform CRA_a [Mus musculus] Length = 2492 Score = 35.8 bits (82), Expect = 2.6, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 113 ALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNI 172 A+VK + SVRN+ ++ + K + + ED + ++I+++ + K Sbjct: 2095 AVVKDPSKNIADAGTSVRNLEQEADRLIDKLKPIKEL-EDNLKKNISEIKELINQARKQA 2153 Query: 173 DSF 175 +S Sbjct: 2154 NSI 2156 >gi|148672869|gb|EDL04816.1| laminin, alpha 2, isoform CRA_b [Mus musculus] Length = 3112 Score = 35.8 bits (82), Expect = 2.6, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 113 ALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNI 172 A+VK + SVRN+ ++ + K + + ED + ++I+++ + K Sbjct: 2077 AVVKDPSKNIADAGTSVRNLEQEADRLIDKLKPIKEL-EDNLKKNISEIKELINQARKQA 2135 Query: 173 DSF 175 +S Sbjct: 2136 NSI 2138 >gi|313892483|ref|ZP_07826072.1| putative Phage T7 tail fiber protein [Dialister microaerophilus UPII 345-E] gi|313119062|gb|EFR42265.1| putative Phage T7 tail fiber protein [Dialister microaerophilus UPII 345-E] Length = 683 Score = 35.8 bits (82), Expect = 2.6, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 36/79 (45%), Gaps = 9/79 (11%) Query: 105 ETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDI--Q 162 + ++ V+ A YA ++K G ++++ ++ +++ + ++ Q Sbjct: 423 KNNKDTVQEYVEDAKRYANEAK------ENSGAKNIEEKLQNKFYTKEEINQKLKELPSQ 476 Query: 163 KITDSTIKN-IDSFFEEKK 180 K+TD K +D E+K+ Sbjct: 477 KVTDVYSKKEVDDKLEKKE 495 >gi|238009876|gb|ACR35973.1| unknown [Zea mays] Length = 779 Score = 35.8 bits (82), Expect = 2.6, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 23/88 (26%) Query: 117 VAHAYAEKSKISVRN---------IRRDGMD-HLKKSRKSGKASEDMVAS----LENDIQ 162 + E K ++RN R+ ++ +K++ SG A ED +E +++ Sbjct: 186 QSKPIYEAFK-AIRNSSNWDSLSDARKRIVEAQIKEAVLSGVALEDEQRKKFNQIEQELE 244 Query: 163 KITDST-------IKNIDSFFEEKKKEI 183 K+T K + +K KEI Sbjct: 245 KLTQKFSENVLDATKKFEKLITDK-KEI 271 >gi|86561512|ref|NP_001021740.2| hypothetical protein Y26D4A.14 [Caenorhabditis elegans] gi|70720768|emb|CAE17957.2| C. elegans predicted protein Y26D4A.14 [Caenorhabditis elegans] Length = 952 Score = 35.8 bits (82), Expect = 2.6, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 33/97 (34%), Gaps = 14/97 (14%) Query: 78 SVERGIHESNLGLNPIVEGQVLRI-----PVP---ETTEERRLALVKVAHA----YAEKS 125 + + I + +L L EG +R+ P R L + H EK Sbjct: 156 PIRKTIRDCDLDLMISDEGFAVRVIKNHSRFPKQIPVAISTREELQQQRHKQQLEEYEKR 215 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQ 162 + +RR+ + + + ++D + +Q Sbjct: 216 NQEI--LRREEEIKQQNQEREKQINDDFEKRKQEKLQ 250 >gi|258422554|ref|ZP_05685462.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Staphylococcus aureus A9635] gi|257847311|gb|EEV71317.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Staphylococcus aureus A9635] Length = 932 Score = 35.8 bits (82), Expect = 2.6, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 6/51 (11%) Query: 131 NIRR-DGMDHL--KKSRKSGKASEDMVASLENDIQK---ITDSTIKNIDSF 175 NIR+ D ++++ KK G SED + S +QK I D Sbjct: 474 NIRKHDSVEYVFGKKLVNEGIISEDEMHSFIEQVQKELRQAHDKINKADKM 524 >gi|49483603|ref|YP_040827.1| 2-oxoglutarate dehydrogenase E1 component [Staphylococcus aureus subsp. aureus MRSA252] gi|257425477|ref|ZP_05601902.1| succinyl-transferring oxoglutarate dehydrogenase, E1 component [Staphylococcus aureus subsp. aureus 55/2053] gi|257428137|ref|ZP_05604535.1| succinyl-transferring oxoglutarate dehydrogenase, E1 component [Staphylococcus aureus subsp. aureus 65-1322] gi|257430769|ref|ZP_05607151.1| alpha-ketoglutarate decarboxylase [Staphylococcus aureus subsp. aureus 68-397] gi|257433528|ref|ZP_05609886.1| alpha-ketoglutarate decarboxylase [Staphylococcus aureus subsp. aureus E1410] gi|257436369|ref|ZP_05612416.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Staphylococcus aureus subsp. aureus M876] gi|282903994|ref|ZP_06311882.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Staphylococcus aureus subsp. aureus C160] gi|282905758|ref|ZP_06313613.1| alpha-ketoglutarate decarboxylase [Staphylococcus aureus subsp. aureus Btn1260] gi|282908729|ref|ZP_06316547.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910993|ref|ZP_06318795.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Staphylococcus aureus subsp. aureus WBG10049] gi|282914202|ref|ZP_06321989.1| 2-oxoglutarate dehydrogenase, E1 component [Staphylococcus aureus subsp. aureus M899] gi|282924307|ref|ZP_06331981.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Staphylococcus aureus subsp. aureus C101] gi|283958176|ref|ZP_06375627.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Staphylococcus aureus subsp. aureus A017934/97] gi|293501228|ref|ZP_06667079.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Staphylococcus aureus subsp. aureus 58-424] gi|293510190|ref|ZP_06668898.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Staphylococcus aureus subsp. aureus M809] gi|293526782|ref|ZP_06671467.1| 2-oxoglutarate dehydrogenase, E1 component [Staphylococcus aureus subsp. aureus M1015] gi|295427926|ref|ZP_06820558.1| oxoglutarate dehydrogenase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297591113|ref|ZP_06949751.1| 2-oxoglutarate dehydrogenase E1 component [Staphylococcus aureus subsp. aureus MN8] gi|81651147|sp|Q6GGZ5|ODO1_STAAR RecName: Full=2-oxoglutarate dehydrogenase E1 component; AltName: Full=Alpha-ketoglutarate dehydrogenase gi|49241732|emb|CAG40422.1| 2-oxoglutarate dehydrogenase E1 component [Staphylococcus aureus subsp. aureus MRSA252] gi|257271934|gb|EEV04072.1| succinyl-transferring oxoglutarate dehydrogenase, E1 component [Staphylococcus aureus subsp. aureus 55/2053] gi|257274978|gb|EEV06465.1| succinyl-transferring oxoglutarate dehydrogenase, E1 component [Staphylococcus aureus subsp. aureus 65-1322] gi|257278897|gb|EEV09516.1| alpha-ketoglutarate decarboxylase [Staphylococcus aureus subsp. aureus 68-397] gi|257281621|gb|EEV11758.1| alpha-ketoglutarate decarboxylase [Staphylococcus aureus subsp. aureus E1410] gi|257284651|gb|EEV14771.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Staphylococcus aureus subsp. aureus M876] gi|282313694|gb|EFB44087.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Staphylococcus aureus subsp. aureus C101] gi|282322270|gb|EFB52594.1| 2-oxoglutarate dehydrogenase, E1 component [Staphylococcus aureus subsp. aureus M899] gi|282324688|gb|EFB54998.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Staphylococcus aureus subsp. aureus WBG10049] gi|282326993|gb|EFB57288.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331050|gb|EFB60564.1| alpha-ketoglutarate decarboxylase [Staphylococcus aureus subsp. aureus Btn1260] gi|282595612|gb|EFC00576.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Staphylococcus aureus subsp. aureus C160] gi|283790325|gb|EFC29142.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Staphylococcus aureus subsp. aureus A017934/97] gi|290920854|gb|EFD97917.1| 2-oxoglutarate dehydrogenase, E1 component [Staphylococcus aureus subsp. aureus M1015] gi|291096233|gb|EFE26494.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Staphylococcus aureus subsp. aureus 58-424] gi|291467134|gb|EFF09652.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Staphylococcus aureus subsp. aureus M809] gi|295128284|gb|EFG57918.1| oxoglutarate dehydrogenase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297575999|gb|EFH94715.1| 2-oxoglutarate dehydrogenase E1 component [Staphylococcus aureus subsp. aureus MN8] gi|312438187|gb|ADQ77258.1| 2-oxoglutarate dehydrogenase E1 component [Staphylococcus aureus subsp. aureus TCH60] gi|315195306|gb|EFU25693.1| alpha-ketoglutarate decarboxylase [Staphylococcus aureus subsp. aureus CGS00] Length = 932 Score = 35.8 bits (82), Expect = 2.6, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 6/51 (11%) Query: 131 NIRR-DGMDHL--KKSRKSGKASEDMVASLENDIQK---ITDSTIKNIDSF 175 NIR+ D ++++ KK G SED + S +QK I D Sbjct: 474 NIRKHDSVEYVFGKKLVNEGIISEDEMHSFIEQVQKELRQAHDKINKADKM 524 >gi|59042884|gb|AAW83831.1| E1 alpha subunit of pyruvate dehydrogenase [Petunia x hybrida] Length = 390 Score = 35.8 bits (82), Expect = 2.7, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 24/53 (45%), Gaps = 3/53 (5%) Query: 125 SKISVRNIR--RDGMDHLKKSRKSGKA-SEDMVASLENDIQKITDSTIKNIDS 174 ++ + +R RD ++ ++K + +E + +E + +KI D I Sbjct: 303 TRDEISGVRQERDPIERIRKLILAHDIATEKELKDIEKEKRKIVDEAIAKAKE 355 >gi|330926046|ref|XP_003301303.1| hypothetical protein PTT_12768 [Pyrenophora teres f. teres 0-1] gi|311324096|gb|EFQ90604.1| hypothetical protein PTT_12768 [Pyrenophora teres f. teres 0-1] Length = 646 Score = 35.8 bits (82), Expect = 2.7, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 40/120 (33%), Gaps = 33/120 (27%) Query: 90 LNPIVEGQV----LRIPVPE--------------TTEERRLALVKVAHAYAEKSKISVRN 131 +P +G + R +P+ T EE L K +RN Sbjct: 212 FSPRRDGGIRKKNARFDIPQERNLFNIDHLIQSCTNEEELKEL-KQQKRL-------LRN 263 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIK---NIDSFFEEKK---KEIMH 185 R+ +D ++ +K + E+ I ++ D D+ EK+ +E M Sbjct: 264 -RQAALDSRQRKKKHTEELEEEKKQWMEKICQMQDDFAAMRIEYDALVAEKENWHRESME 322 >gi|189203065|ref|XP_001937868.1| conserved hypothetical protein [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187984967|gb|EDU50455.1| conserved hypothetical protein [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 646 Score = 35.8 bits (82), Expect = 2.7, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 40/120 (33%), Gaps = 33/120 (27%) Query: 90 LNPIVEGQV----LRIPVPE--------------TTEERRLALVKVAHAYAEKSKISVRN 131 +P +G + R +P+ T EE L K +RN Sbjct: 212 FSPRRDGGIRKKNARFDIPQERNLFNIDHLIQSCTNEEELKEL-KQQKRL-------LRN 263 Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIK---NIDSFFEEKK---KEIMH 185 R+ +D ++ +K + E+ I ++ D D+ EK+ +E M Sbjct: 264 -RQAALDSRQRKKKHTEELEEEKKQWMEKICQMQDDFAAMRIEYDALVAEKENWHRESME 322 >gi|1709449|sp|P52902|ODPA_PEA RecName: Full=Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial; Short=PDHE1-A; Flags: Precursor gi|1263302|gb|AAA97411.1| pyruvate dehydrogenase E1 alpha subunit [Pisum sativum] Length = 397 Score = 35.8 bits (82), Expect = 2.8, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 3/53 (5%) Query: 125 SKISVRNIR--RDGMDHLKKSRKSGKA-SEDMVASLENDIQKITDSTIKNIDS 174 ++ + +R RD ++ ++K S +E + E +++K D I Sbjct: 310 TRDEISGVRQERDPIERVRKLLLSHDIATEKELKDTEKEVRKEVDEAIAKAKD 362 >gi|82751005|ref|YP_416746.1| 2-oxoglutarate dehydrogenase E1 component [Staphylococcus aureus RF122] gi|123549163|sp|Q2YY05|ODO1_STAAB RecName: Full=2-oxoglutarate dehydrogenase E1 component; AltName: Full=Alpha-ketoglutarate dehydrogenase gi|82656536|emb|CAI80958.1| 2-oxoglutarate dehydrogenase E1 component [Staphylococcus aureus RF122] Length = 932 Score = 35.8 bits (82), Expect = 2.8, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 12/54 (22%) Query: 131 NIRRDGMDHL-----KKSRKSGKASEDMVASLENDIQK----ITDSTIKNIDSF 175 NIR+ D + KK G SED + S +QK D I D Sbjct: 474 NIRK--NDSVEYVFGKKLVNEGVISEDEMHSFIEQVQKELRQAHDK-INKADKM 524 >gi|157103376|ref|XP_001647951.1| tropomyosin, putative [Aedes aegypti] gi|108884174|gb|EAT48399.1| tropomyosin, putative [Aedes aegypti] Length = 448 Score = 35.8 bits (82), Expect = 2.8, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 38/96 (39%), Gaps = 23/96 (23%) Query: 111 RLALVKV---AHAYAEKSKISVRNI---RRDGMDHLKKSRKSGKASEDM-------VASL 157 R ++K+ + Y +K ++R + R D + K+ +SED + Sbjct: 230 REEVLKLQDEKYQYQNSAKDALRKVHQERLDATHKVATIEKALCSSEDECSLLREQLNKT 289 Query: 158 ENDIQKIT----------DSTIKNIDSFFEEKKKEI 183 + +Q++T D + + + + K+ EI Sbjct: 290 QLQLQEVTGRLDALQNQYDERVASSEEQLKVKESEI 325 >gi|562006|gb|AAA82975.1| PsHSP71.2 [Pisum sativum] gi|1771479|emb|CAA67867.1| heat shock protein hsp70 [Pisum sativum] Length = 648 Score = 35.8 bits (82), Expect = 2.8, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 14/92 (15%) Query: 105 ETTEERRLALVKVAHAY-AE--------KSKISVRNIRRDGMDHLKKSRKSGKASEDMVA 155 ++E +VK A Y AE ++K S+ N + + +K + GK S D Sbjct: 514 RLSKEEIEKMVKDAEKYKAEDEEVKRKVEAKNSLENYAYNMRNTIKDDKIGGKLSNDDRE 573 Query: 156 SLEN----DIQKITDSTIKNIDSFFEEKKKEI 183 +E IQ + + + ++ FE+K+KE+ Sbjct: 574 KIEKAVEEAIQWLEGNQLGEVEE-FEDKQKEL 604 >gi|73971692|ref|XP_538672.2| PREDICTED: hypothetical protein XP_538672 [Canis familiaris] Length = 954 Score = 35.8 bits (82), Expect = 3.0, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 14/75 (18%) Query: 117 VAHAYAEKSKISV---RNIRRDGM---DHLKKSRKSGKASEDMVASLENDIQKITDSTIK 170 V Y E +++SV RN+R + M + +KK S D ++++ IQK+ Sbjct: 186 VIQKYQENAQLSVKQVRNLRSECMEHQNQIKKVE-----SSDDESNIQEKIQKVRSLW-A 239 Query: 171 NIDS--FFEEKKKEI 183 +++ + EK+KE+ Sbjct: 240 SVNETLIYLEKEKEV 254 >gi|292657174|ref|YP_003537070.1| Tat (twin-arginine translocation) pathway signal sequence domain protein [Haloferax volcanii DS2] gi|291373004|gb|ADE05230.1| Tat (twin-arginine translocation) pathway signal sequence domain protein [Haloferax volcanii DS2] Length = 344 Score = 35.8 bits (82), Expect = 3.0, Method: Composition-based stats. Identities = 8/45 (17%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Query: 142 KSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 K K+ + + D ++++QK+T + + + +K+ E++ Sbjct: 85 KEEKNKQENSDNGEKSDDNVQKMT-KSEQELRKEVSDKEGELLEV 128 >gi|297850898|ref|XP_002893330.1| IAA-conjugate-resistant 4 [Arabidopsis lyrata subsp. lyrata] gi|297339172|gb|EFH69589.1| IAA-conjugate-resistant 4 [Arabidopsis lyrata subsp. lyrata] Length = 393 Score = 35.8 bits (82), Expect = 3.1, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 2/47 (4%) Query: 129 VRNIRRDGMDHLKKSRKSGKA-SEDMVASLENDIQKITDSTIKNIDS 174 VR +R D ++ ++K S +E + +E +I+K D + Sbjct: 313 VRQVR-DPIERVRKLLLSHDIATEKELKDMEKEIRKEVDDAVAQAKE 358 >gi|149196439|ref|ZP_01873494.1| probable cytochrome c-type biogenesis protein [Lentisphaera araneosa HTCC2155] gi|149140700|gb|EDM29098.1| probable cytochrome c-type biogenesis protein [Lentisphaera araneosa HTCC2155] Length = 1131 Score = 35.8 bits (82), Expect = 3.1, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 4/60 (6%) Query: 105 ETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASE--DMVASLENDIQ 162 E +E R + + E+S+ + L K+ K K +E LE ++Q Sbjct: 751 EINKEIRQTRLTAIKSELEESRTEFTK--TKANNELSKNEKDTKLTELSSQEHRLEGELQ 808 >gi|58220970|gb|AAW68151.1| gag protein [Human immunodeficiency virus 1] Length = 492 Score = 35.8 bits (82), Expect = 3.1, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 17/91 (18%) Query: 90 LNP----IVEG--QVLRIPVPET---TEERRLALVKVAHAYAEKSKISVRNIRRDGMDHL 140 LNP +EG Q++R P TEE R VA Y ++I VR+ ++ +D + Sbjct: 46 LNPGLLETLEGCKQIIRQLQPALQTGTEELRSLFNTVATLYCVHARIEVRDT-KEALDKI 104 Query: 141 -----KKSRKSGKASEDMVASLEND--IQKI 164 K +K+ +A +D +N +Q + Sbjct: 105 EEEQNKSQQKTQQAKKDDGKISQNYPIVQNL 135 >gi|297475038|ref|XP_002687731.1| PREDICTED: myosin, heavy chain 9, non-muscle [Bos taurus] gi|296487363|gb|DAA29476.1| myosin, heavy chain 9, non-muscle [Bos taurus] Length = 1965 Score = 35.8 bits (82), Expect = 3.1, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%) Query: 113 ALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIK 170 K A EK+K ++ N R + + +K ++ +E +E +Q++ + Sbjct: 1206 EQTKRVKANLEKAKQTLENERGELANEVKVLQQGKADTEHKRKKVEAQLQELQVKFTE 1263 >gi|300795444|ref|NP_001179691.1| myosin, heavy chain 9, non-muscle [Bos taurus] Length = 1965 Score = 35.8 bits (82), Expect = 3.1, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%) Query: 113 ALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIK 170 K A EK+K ++ N R + + +K ++ +E +E +Q++ + Sbjct: 1206 EQTKRVKANLEKAKQTLENERGELANEVKVLQQGKADTEHKRKKVEAQLQELQVKFTE 1263 >gi|15234871|ref|NP_192733.1| avirulence-responsive family protein / avirulence induced gene (AIG1) family protein [Arabidopsis thaliana] gi|4538998|emb|CAB39619.1| AIG1-like protein [Arabidopsis thaliana] gi|7267691|emb|CAB78118.1| AIG1-like protein [Arabidopsis thaliana] gi|332657415|gb|AEE82815.1| AIG1-like protein [Arabidopsis thaliana] Length = 336 Score = 35.8 bits (82), Expect = 3.1, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 33/76 (43%) Query: 107 TEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITD 166 + + L K + E K + N ++ ++ +K+ +A + N+IQK++ Sbjct: 246 ISQMKKELEKSHNEMLEGIKEKISNQLKESLEDVKEQLAKAQAEREETEKKMNEIQKLSS 305 Query: 167 STIKNIDSFFEEKKKE 182 I+ + + +KE Sbjct: 306 DEIRRLREQLNKAEKE 321 >gi|332231117|ref|XP_003264744.1| PREDICTED: myosin-9 isoform 1 [Nomascus leucogenys] Length = 1929 Score = 35.8 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 23/52 (44%) Query: 113 ALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKI 164 K A EK+K ++ N R + + +K + SE +E +Q++ Sbjct: 1213 EQTKRVKANLEKAKQTLENERGELANEVKVLLQGKGDSEHKRKKVEAQLQEL 1264 >gi|315129122|gb|EFT85117.1| alpha-ketoglutarate decarboxylase [Staphylococcus aureus subsp. aureus CGS03] Length = 722 Score = 35.8 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 8/52 (15%) Query: 131 NIRR-DGMDHL--KKSRKSGKASEDMVASLENDIQK----ITDSTIKNIDSF 175 NIR+ D ++++ KK G SED + S +QK D I D Sbjct: 474 NIRKHDSVEYVFGKKLVNEGVISEDEMHSFIEQVQKELRQAHDK-INKADKM 524 >gi|297708729|ref|XP_002831109.1| PREDICTED: LOW QUALITY PROTEIN: myosin-9-like [Pongo abelii] Length = 1960 Score = 35.8 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 23/52 (44%) Query: 113 ALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKI 164 K A EK+K ++ N R + + +K + SE +E +Q++ Sbjct: 1206 EQTKRVKANLEKAKQTLENERGELANEVKVLLQGKGDSEHKRKKVEAQLQEL 1257 >gi|296191774|ref|XP_002743773.1| PREDICTED: myosin-9 [Callithrix jacchus] Length = 1960 Score = 35.8 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 23/52 (44%) Query: 113 ALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKI 164 K A EK+K ++ N R + + +K + SE +E +Q++ Sbjct: 1206 EQTKRVKANLEKAKQTLENERGELANEVKVLLQGKGDSEHKRKKVEAQLQEL 1257 >gi|12667788|ref|NP_002464.1| myosin-9 [Homo sapiens] gi|6166599|sp|P35579|MYH9_HUMAN RecName: Full=Myosin-9; AltName: Full=Cellular myosin heavy chain, type A; AltName: Full=Myosin heavy chain 9; AltName: Full=Myosin heavy chain, non-muscle IIa; AltName: Full=Non-muscle myosin heavy chain A; Short=NMMHC-A; AltName: Full=Non-muscle myosin heavy chain IIa; Short=NMMHC II-a; Short=NMMHC-IIA gi|3169000|emb|CAB05105.1| myosin, heavy chain 9, non-muscle [Homo sapiens] gi|47678583|emb|CAG30412.1| MYH9 [Homo sapiens] gi|53791227|dbj|BAD52439.1| non-muscle myosin heavy polypeptide 9 [Homo sapiens] gi|109451392|emb|CAK54557.1| MYH9 [synthetic construct] gi|109451988|emb|CAK54856.1| MYH9 [synthetic construct] gi|119580500|gb|EAW60096.1| myosin, heavy polypeptide 9, non-muscle, isoform CRA_a [Homo sapiens] gi|119580502|gb|EAW60098.1| myosin, heavy polypeptide 9, non-muscle, isoform CRA_a [Homo sapiens] gi|152012654|gb|AAI50170.1| Myosin, heavy chain 9, non-muscle [synthetic construct] gi|152012993|gb|AAI50171.1| Myosin, heavy chain 9, non-muscle [synthetic construct] gi|166788562|dbj|BAG06729.1| MYH9 variant protein [Homo sapiens] gi|168270842|dbj|BAG10214.1| myosin-9 [synthetic construct] Length = 1960 Score = 35.8 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 23/52 (44%) Query: 113 ALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKI 164 K A EK+K ++ N R + + +K + SE +E +Q++ Sbjct: 1206 EQTKRVKANLEKAKQTLENERGELANEVKVLLQGKGDSEHKRKKVEAQLQEL 1257 >gi|329733439|gb|EGG69771.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Staphylococcus aureus subsp. aureus 21193] Length = 932 Score = 35.8 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 6/51 (11%) Query: 131 NIRR-DGMDHL--KKSRKSGKASEDMVASLENDIQK---ITDSTIKNIDSF 175 NIR+ D ++++ KK G SED + S +QK I D Sbjct: 474 NIRKHDSVEYVFGKKLVNEGVISEDEMHSFIEQVQKELRQAHDKINKADKM 524 >gi|298694708|gb|ADI97930.1| 2-oxoglutarate dehydrogenase E1 component [Staphylococcus aureus subsp. aureus ED133] Length = 932 Score = 35.8 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 8/52 (15%) Query: 131 NIRR-DGMDHL--KKSRKSGKASEDMVASLENDIQK----ITDSTIKNIDSF 175 NIR+ D ++++ KK G SED + S +QK D I D Sbjct: 474 NIRKHDSVEYVFGKKLVNEGVISEDEMHSFIEQVQKELRQAHDK-INKADKM 524 >gi|332231119|ref|XP_003264745.1| PREDICTED: myosin-9 isoform 2 [Nomascus leucogenys] Length = 1922 Score = 35.8 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 23/52 (44%) Query: 113 ALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKI 164 K A EK+K ++ N R + + +K + SE +E +Q++ Sbjct: 1206 EQTKRVKANLEKAKQTLENERGELANEVKVLLQGKGDSEHKRKKVEAQLQEL 1257 >gi|321265235|ref|XP_003197334.1| hypothetical protein CGB_M2230C [Cryptococcus gattii WM276] gi|317463813|gb|ADV25547.1| Hypothetical Protein CGB_M2230C [Cryptococcus gattii WM276] Length = 679 Score = 35.4 bits (81), Expect = 3.3, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 24/74 (32%), Gaps = 20/74 (27%) Query: 108 EERRLALVK-----VAHAYAEKSKISV-RNIRR--------------DGMDHLKKSRKSG 147 ER L L + E+ KI + R +R D +++ K Sbjct: 155 MERILELADGQSKALLKKRLEEMKIHIERQVRAESCQRITQLENALADSHQDIRRLEKEK 214 Query: 148 KASEDMVASLENDI 161 ED + +E I Sbjct: 215 IILEDTMKEVEERI 228 >gi|311255169|ref|XP_003126114.1| PREDICTED: LOW QUALITY PROTEIN: myosin-9 [Sus scrofa] Length = 1967 Score = 35.4 bits (81), Expect = 3.3, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 23/52 (44%) Query: 113 ALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKI 164 K A EK+K ++ N R + + +K + SE +E +Q++ Sbjct: 1206 EQTKRVKANLEKAKQTLENERGELANEVKVLLQGKGDSEHKRKKVEAQLQEM 1257 >gi|261289639|ref|XP_002604796.1| hypothetical protein BRAFLDRAFT_276977 [Branchiostoma floridae] gi|229290124|gb|EEN60806.1| hypothetical protein BRAFLDRAFT_276977 [Branchiostoma floridae] Length = 371 Score = 35.4 bits (81), Expect = 3.3, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 8/67 (11%) Query: 127 ISVRNIRRDGMDHLKKSRKSGKASEDMVASLEND----IQKITDSTIKNIDS---FFEEK 179 +R R+ + + K +ED + + IQK+ D+ +D ++K Sbjct: 215 DKLRRRMRETFQQAQAEMDALKRTEDDLKKGQRQLDEMIQKL-DTECVEVDKNVQLLKQK 273 Query: 180 KKEIMHF 186 +EI Sbjct: 274 DEEIKEV 280 >gi|126697991|ref|YP_001086888.1| putative cell surface protein [Clostridium difficile 630] gi|115249428|emb|CAJ67243.1| putative cell surface protein Tn1549-like,CTn2-Orf15 [Clostridium difficile] Length = 513 Score = 35.4 bits (81), Expect = 3.3, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 33/59 (55%), Gaps = 2/59 (3%) Query: 116 KVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDS 174 K ++K K ++++ D +D LK+ K K ++D+ ++ +I K+T+ +K ++ Sbjct: 175 KDKDKLSDKQKNKIKDLE-DEIDSLKEKIKKDKGNKDLSKDMKKEIDKLTEK-VKELEK 231 >gi|329314091|gb|AEB88504.1| 2-oxoglutarate dehydrogenase E1 component [Staphylococcus aureus subsp. aureus T0131] Length = 932 Score = 35.4 bits (81), Expect = 3.3, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 6/51 (11%) Query: 131 NIRR-DGMDHL--KKSRKSGKASEDMVASLENDIQK---ITDSTIKNIDSF 175 NIR+ D ++++ KK G SED + S +QK I D Sbjct: 474 NIRKHDSVEYVFGKKLVNEGVISEDEMHSFIEQVQKELRQAHDKINKADKM 524 >gi|302333026|gb|ADL23219.1| oxoglutarate dehydrogenase (succinyl-transferring) E1 [Staphylococcus aureus subsp. aureus JKD6159] Length = 932 Score = 35.4 bits (81), Expect = 3.3, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 6/51 (11%) Query: 131 NIRR-DGMDHL--KKSRKSGKASEDMVASLENDIQK---ITDSTIKNIDSF 175 NIR+ D ++++ KK G SED + S +QK I D Sbjct: 474 NIRKHDSVEYVFGKKLVNEGVISEDEMHSFIEQVQKELRQAHDKINKADKM 524 >gi|15926993|ref|NP_374526.1| 2-oxoglutarate dehydrogenase E1 component [Staphylococcus aureus subsp. aureus N315] gi|81781609|sp|Q99U74|ODO1_STAAN RecName: Full=2-oxoglutarate dehydrogenase E1 component; AltName: Full=Alpha-ketoglutarate dehydrogenase gi|13701210|dbj|BAB42505.1| 2-oxoglutarate dehydrogenase E1 [Staphylococcus aureus subsp. aureus N315] gi|32399940|emb|CAD92217.1| 2-oxoglutarate dehydrogenase E1 [Staphylococcus aureus] gi|32399942|emb|CAD92218.1| 2-oxoglutarate dehydrogenase E1 [Staphylococcus aureus] gi|32399944|emb|CAD92219.1| 2-oxoglutarate dehydrogenase E1 [Staphylococcus aureus] gi|32399946|emb|CAD92220.1| 2-oxoglutarate dehydrogenase E1 [Staphylococcus aureus] gi|32399948|emb|CAD92221.1| 2-oxoglutarate dehydrogenase E1 [Staphylococcus aureus] gi|32399950|emb|CAD92222.1| 2-oxoglutarate dehydrogenase E1 [Staphylococcus aureus] gi|32399952|emb|CAD92223.1| 2-oxoglutarate dehydrogenase E1 [Staphylococcus aureus] gi|32399954|emb|CAD92224.1| 2-oxoglutarate dehydrogenase E1 [Staphylococcus aureus] gi|32399956|emb|CAD92225.1| 2-oxoglutarate dehydrogenase E1 [Staphylococcus aureus] gi|32399958|emb|CAD92226.1| 2-oxoglutarate dehydrogenase E1 [Staphylococcus aureus] gi|32399960|emb|CAD92227.1| 2-oxoglutarate dehydrogenase E1 [Staphylococcus aureus] gi|32399962|emb|CAD92228.1| 2-oxoglutarate dehydrogenase E1 [Staphylococcus aureus] Length = 910 Score = 35.4 bits (81), Expect = 3.3, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 6/51 (11%) Query: 131 NIRR-DGMDHL--KKSRKSGKASEDMVASLENDIQK---ITDSTIKNIDSF 175 NIR+ D ++++ KK G SED + S +QK I D Sbjct: 452 NIRKHDSVEYVFGKKLVNEGVISEDEMHSFIEQVQKELRQAHDKINKADKM 502 >gi|49486254|ref|YP_043475.1| 2-oxoglutarate dehydrogenase E1 component [Staphylococcus aureus subsp. aureus MSSA476] gi|57651914|ref|YP_186301.1| alpha-ketoglutarate decarboxylase [Staphylococcus aureus subsp. aureus COL] gi|87159912|ref|YP_494003.1| 2-oxoglutarate dehydrogenase E1 component [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195143|ref|YP_499944.1| 2-oxoglutarate dehydrogenase E1 component [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221538|ref|YP_001332360.1| 2-oxoglutarate dehydrogenase E1 component [Staphylococcus aureus subsp. aureus str. Newman] gi|161509578|ref|YP_001575237.1| 2-oxoglutarate dehydrogenase E1 component [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|258452755|ref|ZP_05700752.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Staphylococcus aureus A5948] gi|282927661|ref|ZP_06335276.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Staphylococcus aureus A9765] gi|284024413|ref|ZP_06378811.1| 2-oxoglutarate dehydrogenase E1 component [Staphylococcus aureus subsp. aureus 132] gi|294850785|ref|ZP_06791501.1| oxoglutarate dehydrogenase [Staphylococcus aureus A9754] gi|297207930|ref|ZP_06924363.1| 2-oxoglutarate dehydrogenase E1 component [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300912014|ref|ZP_07129457.1| 2-oxoglutarate dehydrogenase E1 component [Staphylococcus aureus subsp. aureus TCH70] gi|304381009|ref|ZP_07363665.1| 2-oxoglutarate dehydrogenase E1 component [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|81649322|sp|Q6G9E8|ODO1_STAAS RecName: Full=2-oxoglutarate dehydrogenase E1 component; AltName: Full=Alpha-ketoglutarate dehydrogenase gi|81694511|sp|Q5HG06|ODO1_STAAC RecName: Full=2-oxoglutarate dehydrogenase E1 component; AltName: Full=Alpha-ketoglutarate dehydrogenase gi|122539579|sp|Q2FYM1|ODO1_STAA8 RecName: Full=2-oxoglutarate dehydrogenase E1 component; AltName: Full=Alpha-ketoglutarate dehydrogenase gi|123485964|sp|Q2FH25|ODO1_STAA3 RecName: Full=2-oxoglutarate dehydrogenase E1 component; AltName: Full=Alpha-ketoglutarate dehydrogenase gi|172048882|sp|A6QGW6|ODO1_STAAE RecName: Full=2-oxoglutarate dehydrogenase E1 component; AltName: Full=Alpha-ketoglutarate dehydrogenase gi|189029261|sp|A8Z3Z0|ODO1_STAAT RecName: Full=2-oxoglutarate dehydrogenase E1 component; AltName: Full=Alpha-ketoglutarate dehydrogenase gi|49244697|emb|CAG43131.1| 2-oxoglutarate dehydrogenase E1 component [Staphylococcus aureus subsp. aureus MSSA476] gi|57286100|gb|AAW38194.1| 2-oxoglutarate dehydrogenase, E1 component [Staphylococcus aureus subsp. aureus COL] gi|87125886|gb|ABD20400.1| 2-oxoglutarate dehydrogenase, E1 component [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202701|gb|ABD30511.1| 2-oxoglutarate dehydrogenase, E1 component [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374338|dbj|BAF67598.1| 2-oxoglutarate dehydrogenase E1 component [Staphylococcus aureus subsp. aureus str. Newman] gi|160368387|gb|ABX29358.1| oxoglutarate dehydrogenase (succinyl-transferring) E1 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257859568|gb|EEV82419.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Staphylococcus aureus A5948] gi|269940908|emb|CBI49292.1| 2-oxoglutarate dehydrogenase E1 component [Staphylococcus aureus subsp. aureus TW20] gi|282592050|gb|EFB97077.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Staphylococcus aureus A9765] gi|283470628|emb|CAQ49839.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Staphylococcus aureus subsp. aureus ST398] gi|294822360|gb|EFG38813.1| oxoglutarate dehydrogenase [Staphylococcus aureus A9754] gi|296887504|gb|EFH26404.1| 2-oxoglutarate dehydrogenase E1 component [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300886260|gb|EFK81462.1| 2-oxoglutarate dehydrogenase E1 component [Staphylococcus aureus subsp. aureus TCH70] gi|304340453|gb|EFM06391.1| 2-oxoglutarate dehydrogenase E1 component [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315195876|gb|EFU26243.1| alpha-ketoglutarate decarboxylase [Staphylococcus aureus subsp. aureus CGS01] gi|320139561|gb|EFW31431.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Staphylococcus aureus subsp. aureus MRSA131] gi|320142169|gb|EFW33987.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Staphylococcus aureus subsp. aureus MRSA177] gi|329730554|gb|EGG66940.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Staphylococcus aureus subsp. aureus 21189] Length = 932 Score = 35.4 bits (81), Expect = 3.3, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 6/51 (11%) Query: 131 NIRR-DGMDHL--KKSRKSGKASEDMVASLENDIQK---ITDSTIKNIDSF 175 NIR+ D ++++ KK G SED + S +QK I D Sbjct: 474 NIRKHDSVEYVFGKKLVNEGVISEDEMHSFIEQVQKELRQAHDKINKADKM 524 >gi|253732050|ref|ZP_04866215.1| alpha-ketoglutarate decarboxylase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724212|gb|EES92941.1| alpha-ketoglutarate decarboxylase [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 932 Score = 35.4 bits (81), Expect = 3.4, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 6/51 (11%) Query: 131 NIRR-DGMDHL--KKSRKSGKASEDMVASLENDIQK---ITDSTIKNIDSF 175 NIR+ D ++++ KK G SED + S +QK I D Sbjct: 474 NIRKHDSVEYVFGKKLVNEGVISEDEMHSFIEQVQKELRQAHDKINKADKM 524 >gi|57634631|ref|NP_371937.2| 2-oxoglutarate dehydrogenase E1 component [Staphylococcus aureus subsp. aureus Mu50] gi|148267901|ref|YP_001246844.1| 2-oxoglutarate dehydrogenase E1 component [Staphylococcus aureus subsp. aureus JH9] gi|150393964|ref|YP_001316639.1| 2-oxoglutarate dehydrogenase E1 component [Staphylococcus aureus subsp. aureus JH1] gi|156979732|ref|YP_001441991.1| 2-oxoglutarate dehydrogenase E1 component [Staphylococcus aureus subsp. aureus Mu3] gi|253315264|ref|ZP_04838477.1| 2-oxoglutarate dehydrogenase E1 component [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253733340|ref|ZP_04867505.1| alpha-ketoglutarate decarboxylase [Staphylococcus aureus subsp. aureus TCH130] gi|255006202|ref|ZP_05144803.2| 2-oxoglutarate dehydrogenase E1 component [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795532|ref|ZP_05644511.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Staphylococcus aureus A9781] gi|258413340|ref|ZP_05681616.1| oxoglutarate dehydrogenase [Staphylococcus aureus A9763] gi|258420553|ref|ZP_05683495.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Staphylococcus aureus A9719] gi|258434675|ref|ZP_05688749.1| oxoglutarate dehydrogenase [Staphylococcus aureus A9299] gi|258444749|ref|ZP_05693078.1| oxoglutarate dehydrogenase [Staphylococcus aureus A8115] gi|258447416|ref|ZP_05695560.1| oxoglutarate dehydrogenase [Staphylococcus aureus A6300] gi|258449257|ref|ZP_05697360.1| oxoglutarate dehydrogenase [Staphylococcus aureus A6224] gi|258454637|ref|ZP_05702601.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Staphylococcus aureus A5937] gi|269203036|ref|YP_003282305.1| 2-oxoglutarate dehydrogenase E1 component [Staphylococcus aureus subsp. aureus ED98] gi|282892907|ref|ZP_06301142.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Staphylococcus aureus A8117] gi|282927938|ref|ZP_06335547.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Staphylococcus aureus A10102] gi|295406360|ref|ZP_06816167.1| oxoglutarate dehydrogenase [Staphylococcus aureus A8819] gi|296275273|ref|ZP_06857780.1| 2-oxoglutarate dehydrogenase E1 component [Staphylococcus aureus subsp. aureus MR1] gi|297244589|ref|ZP_06928472.1| oxoglutarate dehydrogenase [Staphylococcus aureus A8796] gi|81774913|sp|Q931R8|ODO1_STAAM RecName: Full=2-oxoglutarate dehydrogenase E1 component; AltName: Full=Alpha-ketoglutarate dehydrogenase gi|166215766|sp|A7X295|ODO1_STAA1 RecName: Full=2-oxoglutarate dehydrogenase E1 component; AltName: Full=Alpha-ketoglutarate dehydrogenase gi|189029259|sp|A6U1N4|ODO1_STAA2 RecName: Full=2-oxoglutarate dehydrogenase E1 component; AltName: Full=Alpha-ketoglutarate dehydrogenase gi|189029260|sp|A5ISU5|ODO1_STAA9 RecName: Full=2-oxoglutarate dehydrogenase E1 component; AltName: Full=Alpha-ketoglutarate dehydrogenase gi|46395526|dbj|BAB57575.2| oxoglutarate dehydrogenase [Staphylococcus aureus subsp. aureus Mu50] gi|147740970|gb|ABQ49268.1| 2-oxoglutarate dehydrogenase E1 component [Staphylococcus aureus subsp. aureus JH9] gi|149946416|gb|ABR52352.1| 2-oxoglutarate dehydrogenase, E1 subunit [Staphylococcus aureus subsp. aureus JH1] gi|156721867|dbj|BAF78284.1| oxoglutarate dehydrogenase [Staphylococcus aureus subsp. aureus Mu3] gi|253728692|gb|EES97421.1| alpha-ketoglutarate decarboxylase [Staphylococcus aureus subsp. aureus TCH130] gi|257789504|gb|EEV27844.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Staphylococcus aureus A9781] gi|257839904|gb|EEV64372.1| oxoglutarate dehydrogenase [Staphylococcus aureus A9763] gi|257843501|gb|EEV67908.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Staphylococcus aureus A9719] gi|257849036|gb|EEV73018.1| oxoglutarate dehydrogenase [Staphylococcus aureus A9299] gi|257850242|gb|EEV74195.1| oxoglutarate dehydrogenase [Staphylococcus aureus A8115] gi|257853607|gb|EEV76566.1| oxoglutarate dehydrogenase [Staphylococcus aureus A6300] gi|257857245|gb|EEV80143.1| oxoglutarate dehydrogenase [Staphylococcus aureus A6224] gi|257863020|gb|EEV85784.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Staphylococcus aureus A5937] gi|262075326|gb|ACY11299.1| 2-oxoglutarate dehydrogenase E1 component [Staphylococcus aureus subsp. aureus ED98] gi|282590235|gb|EFB95315.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Staphylococcus aureus A10102] gi|282764904|gb|EFC05029.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Staphylococcus aureus A8117] gi|285817091|gb|ADC37578.1| 2-oxoglutarate dehydrogenase E1 component [Staphylococcus aureus 04-02981] gi|294968948|gb|EFG44970.1| oxoglutarate dehydrogenase [Staphylococcus aureus A8819] gi|297178619|gb|EFH37865.1| oxoglutarate dehydrogenase [Staphylococcus aureus A8796] gi|312829808|emb|CBX34650.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Staphylococcus aureus subsp. aureus ECT-R 2] gi|329727040|gb|EGG63496.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Staphylococcus aureus subsp. aureus 21172] Length = 932 Score = 35.4 bits (81), Expect = 3.4, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 6/51 (11%) Query: 131 NIRR-DGMDHL--KKSRKSGKASEDMVASLENDIQK---ITDSTIKNIDSF 175 NIR+ D ++++ KK G SED + S +QK I D Sbjct: 474 NIRKHDSVEYVFGKKLVNEGVISEDEMHSFIEQVQKELRQAHDKINKADKM 524 >gi|323438698|gb|EGA96440.1| 2-oxoglutarate dehydrogenase E1 component [Staphylococcus aureus O11] gi|323444067|gb|EGB01678.1| 2-oxoglutarate dehydrogenase E1 component [Staphylococcus aureus O46] Length = 932 Score = 35.4 bits (81), Expect = 3.4, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 6/51 (11%) Query: 131 NIRR-DGMDHL--KKSRKSGKASEDMVASLENDIQK---ITDSTIKNIDSF 175 NIR+ D ++++ KK G SED + S +QK I D Sbjct: 474 NIRKHDSVEYVFGKKLVNEGVISEDEMHSFIEQVQKELRQAHDKINKADKM 524 >gi|126305909|ref|XP_001377868.1| PREDICTED: similar to guanylate binding protein 1 [Monodelphis domestica] Length = 705 Score = 35.4 bits (81), Expect = 3.4, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 4/55 (7%) Query: 110 RRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKI 164 R + K A+ E+ K +N+R D +K+ K + + D + SL IQ++ Sbjct: 511 RNQEMQKQDTAFQEEMKDETKNMR----DEVKRKEKDDQKARDEIQSLRTRIQQL 561 >gi|283770484|ref|ZP_06343376.1| 2-oxoglutarate dehydrogenase E1 component [Staphylococcus aureus subsp. aureus H19] gi|283460631|gb|EFC07721.1| 2-oxoglutarate dehydrogenase E1 component [Staphylococcus aureus subsp. aureus H19] Length = 932 Score = 35.4 bits (81), Expect = 3.5, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 6/51 (11%) Query: 131 NIRR-DGMDHL--KKSRKSGKASEDMVASLENDIQK---ITDSTIKNIDSF 175 NIR+ D ++++ KK G SED + S +QK I D Sbjct: 474 NIRKHDSVEYVFGKKLVNEGVISEDEMHSFIEQVQKELRQAHDKINKADKM 524 >gi|21283032|ref|NP_646120.1| 2-oxoglutarate dehydrogenase E1 component [Staphylococcus aureus subsp. aureus MW2] gi|81762510|sp|Q8NWR6|ODO1_STAAW RecName: Full=2-oxoglutarate dehydrogenase E1 component; AltName: Full=Alpha-ketoglutarate dehydrogenase gi|21204471|dbj|BAB95168.1| oxoglutarate dehydrogenase [Staphylococcus aureus subsp. aureus MW2] gi|32399926|emb|CAD92210.1| 2-oxoglutarate dehydrogenase E1 [Staphylococcus aureus] gi|32399928|emb|CAD92211.1| 2-oxoglutarate dehydrogenase E1 [Staphylococcus aureus] gi|32399930|emb|CAD92212.1| 2-oxoglutarate dehydrogenase E1 [Staphylococcus aureus] gi|32399932|emb|CAD92213.1| 2-oxoglutarate dehydrogenase E1 [Staphylococcus aureus] gi|32399934|emb|CAD92214.1| 2-oxoglutarate dehydrogenase E1 [Staphylococcus aureus] gi|32399936|emb|CAD92215.1| 2-oxoglutarate dehydrogenase E1 [Staphylococcus aureus] gi|32399938|emb|CAD92216.1| 2-oxoglutarate dehydrogenase E1 [Staphylococcus aureus] Length = 932 Score = 35.4 bits (81), Expect = 3.5, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 6/51 (11%) Query: 131 NIRR-DGMDHL--KKSRKSGKASEDMVASLENDIQK---ITDSTIKNIDSF 175 NIR+ D ++++ KK G SED + S +QK I D Sbjct: 474 NIRKHDSVEYVFGKKLVNEGVISEDEMHSFIEQVQKELRQAHDKINKADKM 524 >gi|308503709|ref|XP_003114038.1| CRE-NHR-139 protein [Caenorhabditis remanei] gi|308261423|gb|EFP05376.1| CRE-NHR-139 protein [Caenorhabditis remanei] Length = 609 Score = 35.4 bits (81), Expect = 3.5, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 7/56 (12%) Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASE-------DMVASLENDIQKITDSTI 169 +E RNIR+ + LK + SE D + LE QK+ + + Sbjct: 532 ISEDGAKLCRNIRKVILRELKGYQDDKNCSEMRLADTIDTLRLLEKAEQKLQEEFV 587 >gi|221142646|ref|ZP_03567139.1| alpha-ketoglutarate decarboxylase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|302751243|gb|ADL65420.1| oxoglutarate dehydrogenase (succinyl-transferring) E1 [Staphylococcus aureus subsp. aureus str. JKD6008] Length = 932 Score = 35.4 bits (81), Expect = 3.5, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 6/51 (11%) Query: 131 NIRR-DGMDHL--KKSRKSGKASEDMVASLENDIQK---ITDSTIKNIDSF 175 NIR+ D ++++ KK G SED + S +QK I D Sbjct: 474 NIRKHDSVEYVFGKKLVNEGVISEDEMHSFIEQVQKELRQAHDKINKADKM 524 >gi|85105830|ref|XP_962046.1| hypothetical protein NCU08835 [Neurospora crassa OR74A] gi|28923639|gb|EAA32810.1| predicted protein [Neurospora crassa OR74A] Length = 569 Score = 35.4 bits (81), Expect = 3.6, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 4/73 (5%) Query: 109 ERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDST 168 E ++A Y + K S R +R H ++ K+ + S+ V LE I+ + Sbjct: 500 ELVQECSRLAKKYTQIRKKSEREAKRMEKKHRRELEKTKRKSKKEVKRLEKKIESL---- 555 Query: 169 IKNIDSFFEEKKK 181 K + + Sbjct: 556 EKEVLKALAGPEA 568 >gi|282916680|ref|ZP_06324438.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Staphylococcus aureus subsp. aureus D139] gi|282319167|gb|EFB49519.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Staphylococcus aureus subsp. aureus D139] Length = 932 Score = 35.4 bits (81), Expect = 3.6, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 6/51 (11%) Query: 131 NIRR-DGMDHL--KKSRKSGKASEDMVASLENDIQK---ITDSTIKNIDSF 175 NIR+ D ++++ KK G SED + S +QK I D Sbjct: 474 NIRKHDSVEYVFGKKLVNEGVISEDEMHSFIEQVQKELRQAHDKINKADKM 524 >gi|52080256|ref|YP_079047.1| undecaprenyl pyrophosphate synthase [Bacillus licheniformis ATCC 14580] gi|52785633|ref|YP_091462.1| hypothetical protein BLi01874 [Bacillus licheniformis ATCC 14580] gi|319645964|ref|ZP_08000194.1| UppS protein [Bacillus sp. BT1B_CT2] gi|52003467|gb|AAU23409.1| undecaprenyl pyrophosphate synthetase [Bacillus licheniformis ATCC 14580] gi|52348135|gb|AAU40769.1| UppS [Bacillus licheniformis ATCC 14580] gi|317391714|gb|EFV72511.1| UppS protein [Bacillus sp. BT1B_CT2] Length = 260 Score = 35.4 bits (81), Expect = 3.6, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 8/54 (14%) Query: 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 + +VE+ I ++ +G +L R +V+ A AE++K Sbjct: 132 PHTIRAVEKAIRDTE-----NNDGLILNF---ALNYGGRAEIVRAAKKIAEEAK 177 >gi|166215767|sp|P0C601|ODO1_STAAU RecName: Full=2-oxoglutarate dehydrogenase E1 component; AltName: Full=Alpha-ketoglutarate dehydrogenase gi|32399898|emb|CAD92196.1| 2-oxoglutarate dehydrogenase E1 [Staphylococcus aureus] gi|32399900|emb|CAD92197.1| 2-oxoglutarate dehydrogenase E1 [Staphylococcus aureus] gi|32399902|emb|CAD92198.1| 2-oxoglutarate dehydrogenase E1 [Staphylococcus aureus] gi|32399904|emb|CAD92199.1| 2-oxoglutarate dehydrogenase E1 [Staphylococcus aureus] gi|32399906|emb|CAD92200.1| 2-oxoglutarate dehydrogenase E1 [Staphylococcus aureus] gi|32399908|emb|CAD92201.1| 2-oxoglutarate dehydrogenase E1 [Staphylococcus aureus] gi|32399910|emb|CAD92202.1| 2-oxoglutarate dehydrogenase E1 [Staphylococcus aureus] gi|32399912|emb|CAD92203.1| 2-oxoglutarate dehydrogenase E1 [Staphylococcus aureus] gi|32399914|emb|CAD92204.1| 2-oxoglutarate dehydrogenase E1 [Staphylococcus aureus] gi|32399916|emb|CAD92205.1| 2-oxoglutarate dehydrogenase E1 [Staphylococcus aureus] gi|32399918|emb|CAD92206.1| 2-oxoglutarate dehydrogenase E1 [Staphylococcus aureus] gi|32399920|emb|CAD92207.1| 2-oxoglutarate dehydrogenase E1 [Staphylococcus aureus] gi|32399922|emb|CAD92208.1| 2-oxoglutarate dehydrogenase E1 [Staphylococcus aureus] gi|32399924|emb|CAD92209.1| 2-oxoglutarate dehydrogenase E1 [Staphylococcus aureus] Length = 932 Score = 35.4 bits (81), Expect = 3.6, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 6/51 (11%) Query: 131 NIRR-DGMDHL--KKSRKSGKASEDMVASLENDIQK---ITDSTIKNIDSF 175 NIR+ D ++++ KK G SED + S +QK I D Sbjct: 474 NIRKHDSVEYVFGKKLVNEGVISEDEMHSFIEQVQKELRQAHDKINKADKM 524 >gi|256273929|gb|EEU08848.1| Smc5p [Saccharomyces cerevisiae JAY291] Length = 1093 Score = 35.4 bits (81), Expect = 3.7, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 13/76 (17%) Query: 112 LALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKN 171 + + E++K ++R I K K + +LEN ++++T+ Sbjct: 279 KEKLNIYKEEYERAKANLRAI-----------LKDKKPFANTKKTLENQVEELTEKCSLK 327 Query: 172 IDSFFEEKKK--EIMH 185 D F + K+K EI Sbjct: 328 TDEFLKAKEKINEIFE 343 >gi|298489942|ref|YP_003720119.1| multi-sensor signal transduction histidine kinase ['Nostoc azollae' 0708] gi|298231860|gb|ADI62996.1| multi-sensor signal transduction histidine kinase ['Nostoc azollae' 0708] Length = 1138 Score = 35.4 bits (81), Expect = 3.7, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 11/82 (13%) Query: 55 VANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLAL 114 +A++T+ + + V+ + M + N L + I P Sbjct: 659 IADITIPDGSITYVNPAFERMTGYTAAEVMRQNFRLFLGAD-----INQPAL------EQ 707 Query: 115 VKVAHAYAEKSKISVRNIRRDG 136 +K+A + K+ +RN R+DG Sbjct: 708 MKIAMQTGQDCKVILRNYRKDG 729 >gi|30025966|gb|AAP04522.1| heat shock protein 70 [Nicotiana tabacum] Length = 648 Score = 35.4 bits (81), Expect = 3.7, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 14/92 (15%) Query: 105 ETTEERRLALVKVAHAY-AE--------KSKISVRNIRRDGMDHLKKSRKSGKASEDMVA 155 ++E +V+ A Y AE ++K ++ N + + +K + K S D Sbjct: 515 RLSKEEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTIKDEKIGSKLSSDDKK 574 Query: 156 SLENDIQK----ITDSTIKNIDSFFEEKKKEI 183 +E+ I + + + + D FE+K KE+ Sbjct: 575 KIEDAIDQAISWLDSNQLAEADE-FEDKMKEL 605 >gi|242029780|gb|ACS76917.1| gag protein [Human immunodeficiency virus 1] Length = 454 Score = 35.4 bits (81), Expect = 3.8, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 22/89 (24%) Query: 90 LNP----IVEG--QVLRIPVPET---TEERRLALVKVAHAYAEKSKISVRNIRRDGMDHL 140 LNP +EG Q+++ +P TEE R VA Y +KI VR+ ++ +D + Sbjct: 29 LNPGLLETLEGCKQIIKQLLPALQTGTEEIRSLYNTVATLYCVHAKIEVRDT-KEALDKI 87 Query: 141 KKSRKSGKASEDMVASLENDIQ--KITDS 167 E+ ++ +Q ++ D Sbjct: 88 ----------EEEQKQVQQKMQPTEMADK 106 >gi|85706318|ref|ZP_01037412.1| valyl-tRNA synthetase [Roseovarius sp. 217] gi|85669091|gb|EAQ23958.1| valyl-tRNA synthetase [Roseovarius sp. 217] Length = 1033 Score = 35.4 bits (81), Expect = 3.8, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 6/50 (12%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVS-----PSMLDLVKVEA 45 + +ID+ K R+ T++ L+K++ LR GR++ S + V VEA Sbjct: 960 LADIIDVAEEKARLEKTLTKLEKELGGLR-GRLNNPNFVASAPEEVVVEA 1008 >gi|325570641|ref|ZP_08146367.1| ABC superfamily ATP binding cassette transporter, permease protein [Enterococcus casseliflavus ATCC 12755] gi|325156487|gb|EGC68667.1| ABC superfamily ATP binding cassette transporter, permease protein [Enterococcus casseliflavus ATCC 12755] Length = 1140 Score = 35.4 bits (81), Expect = 3.8, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 34/88 (38%), Gaps = 9/88 (10%) Query: 102 PVPETTEERRLALVKVAHAYAEKSKISVRN-------IRRDGMDHLKKSRKSG-KASEDM 153 + + RR L+ A +++K +RN +R+ D +K ++ + +E Sbjct: 242 KLAPLAQGRRQELIDEAQPAIDEAKEQIRNGETALQEAQRELDDAQEKLAQAHRELTEQE 301 Query: 154 VASLENDIQKITDSTIKNIDSFFEEKKK 181 + + +IQ + E K+ Sbjct: 302 A-AFQTEIQAAQEQLNSEAQKIAEGKQA 328 >gi|160331065|ref|XP_001712240.1| hsp70 [Hemiselmis andersenii] gi|159765687|gb|ABW97915.1| hsp70 [Hemiselmis andersenii] Length = 650 Score = 35.4 bits (81), Expect = 3.8, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 28/102 (27%) Query: 105 ETTEERRLALVKVA---HAYAEKSKISVR----------NIRRDGMDHLKKSRKSGKASE 151 ++E +V+ A EK++ + NIR + +K + K SE Sbjct: 516 RLSKEDIERMVEEAEKYKHEDEKTRQKIEAKNSLENYAYNIR----NTIKDEKIKDKISE 571 Query: 152 DMVASLENDIQKITDSTIKNID-------SFFEEKKKEIMHF 186 D +E T+ I I+ +E+K+ E+ Sbjct: 572 DEKKIIEEK----TNEIISAIENDESLEKEDYEKKENELKEI 609 >gi|9507327|ref|NP_040423.1| hypothetical protein pLS1_p4 [Plasmid pLS1] gi|149701|gb|AAA98168.1| ORFD [Plasmid pLS1] Length = 299 Score = 35.4 bits (81), Expect = 3.8, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +R+ + LKK S K ED ++ LE + K T IK IDS E+ E+ Sbjct: 62 LRKQYQEELKKLESSKKPLEDDLSHLEELLDKKTKEYIK-IDSEASERASEL 112 >gi|207341356|gb|EDZ69438.1| YOL034Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi|259149451|emb|CAY86255.1| Smc5p [Saccharomyces cerevisiae EC1118] Length = 1093 Score = 35.4 bits (81), Expect = 3.9, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 13/76 (17%) Query: 112 LALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKN 171 + + E++K ++R I K K + +LEN ++++T+ Sbjct: 279 KEKLNIYKEEYERAKANLRAI-----------LKDKKPFANTKKTLENQVEELTEKCSLK 327 Query: 172 IDSFFEEKKK--EIMH 185 D F + K+K EI Sbjct: 328 TDEFLKAKEKINEIFE 343 >gi|242029832|gb|ACS76943.1| gag protein [Human immunodeficiency virus 1] Length = 456 Score = 35.4 bits (81), Expect = 4.0, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 22/89 (24%) Query: 90 LNP----IVEG--QVLRIPVPET---TEERRLALVKVAHAYAEKSKISVRNIRRDGMDHL 140 LNP EG Q+++ +P TEE R VA Y +KI VR+ ++ +D + Sbjct: 31 LNPGLLETAEGCKQLIKQLLPALQTGTEELRSLYNTVATLYCVHAKIEVRDT-KEALDKI 89 Query: 141 KKSRKSGKASEDMVASLENDIQ--KITDS 167 E+ ++ +Q ++ D Sbjct: 90 ----------EEEQKQVQQKMQPTEMADK 108 >gi|190407309|gb|EDV10576.1| structural maintenance of chromosome 5 [Saccharomyces cerevisiae RM11-1a] Length = 1093 Score = 35.4 bits (81), Expect = 4.0, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 13/76 (17%) Query: 112 LALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKN 171 + + E++K ++R I K K + +LEN ++++T+ Sbjct: 279 KEKLNIYKEEYERAKANLRAI-----------LKDKKPFANTKKTLENQVEELTEKCSLK 327 Query: 172 IDSFFEEKKK--EIMH 185 D F + K+K EI Sbjct: 328 TDEFLKAKEKINEIFE 343 >gi|6324539|ref|NP_014608.1| Smc5p [Saccharomyces cerevisiae S288c] gi|74627239|sp|Q08204|SMC5_YEAST RecName: Full=Structural maintenance of chromosomes protein 5 gi|1419827|emb|CAA99034.1| unnamed protein product [Saccharomyces cerevisiae] gi|285814854|tpg|DAA10747.1| TPA: Smc5p [Saccharomyces cerevisiae S288c] Length = 1093 Score = 35.4 bits (81), Expect = 4.0, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 13/76 (17%) Query: 112 LALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKN 171 + + E++K ++R I K K + +LEN ++++T+ Sbjct: 279 KEKLNIYKEEYERAKANLRAI-----------LKDKKPFANTKKTLENQVEELTEKCSLK 327 Query: 172 IDSFFEEKKK--EIMH 185 D F + K+K EI Sbjct: 328 TDEFLKAKEKINEIFE 343 >gi|134298387|ref|YP_001111883.1| helicase domain-containing protein [Desulfotomaculum reducens MI-1] gi|134051087|gb|ABO49058.1| helicase domain protein [Desulfotomaculum reducens MI-1] Length = 942 Score = 35.4 bits (81), Expect = 4.0, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 2/75 (2%) Query: 112 LALVKVAHAYAEKSKISVRNIRR-DGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIK 170 L K K+ ++V + LK K + +++I + D I Sbjct: 860 KELDKELKELRRKATVAVSLAEKLAAQKELKIQEKKRTQKRRQLYDAQDEIDERRDELIA 919 Query: 171 NIDSFFEEKKK-EIM 184 I+ +K+K E++ Sbjct: 920 GIERLMLQKQKVEVL 934 >gi|242029834|gb|ACS76944.1| gag protein [Human immunodeficiency virus 1] Length = 456 Score = 35.4 bits (81), Expect = 4.0, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 22/89 (24%) Query: 90 LNP----IVEG--QVLRIPVPET---TEERRLALVKVAHAYAEKSKISVRNIRRDGMDHL 140 LNP EG Q+++ +P TEE R VA Y +KI VR+ ++ +D + Sbjct: 31 LNPGLLETAEGCKQLIKQLLPALQTGTEELRSLYNTVATLYCVHAKIEVRDT-KEALDKI 89 Query: 141 KKSRKSGKASEDMVASLENDIQ--KITDS 167 E+ ++ +Q ++ D Sbjct: 90 ----------EEEQKQVQQKMQPTEMADK 108 >gi|186682973|ref|YP_001866169.1| GAF sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186465425|gb|ACC81226.1| GAF sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 2198 Score = 35.4 bits (81), Expect = 4.1, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 40/74 (54%), Gaps = 2/74 (2%) Query: 110 RRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTI 169 R L+K + + AE+ + +N R+ L++ +S K SED++ + ++Q+ T++ + Sbjct: 1430 RTEELLKQSQSLAEELQTQ-QNELRETNKRLEQQAQSLKTSEDLLKGQQEELQQ-TNAEL 1487 Query: 170 KNIDSFFEEKKKEI 183 + +KKE+ Sbjct: 1488 EEKAELLAMQKKEV 1501 >gi|38325815|gb|AAR17080.1| heat shock protein 70-3 [Nicotiana tabacum] Length = 648 Score = 35.4 bits (81), Expect = 4.1, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 14/92 (15%) Query: 105 ETTEERRLALVKVAHAY-AE--------KSKISVRNIRRDGMDHLKKSRKSGKASEDMVA 155 ++E +V+ A Y AE ++K ++ N + + +K + K S D Sbjct: 515 RLSKEEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTIKDEKIGSKLSSDDKK 574 Query: 156 SLENDIQK----ITDSTIKNIDSFFEEKKKEI 183 +E+ I + + + + D FE+K KE+ Sbjct: 575 KIEDAIDQAISWLDSNQLAEADE-FEDKMKEL 605 >gi|242029838|gb|ACS76946.1| gag protein [Human immunodeficiency virus 1] Length = 456 Score = 35.4 bits (81), Expect = 4.1, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 22/89 (24%) Query: 90 LNP----IVEG--QVLRIPVPET---TEERRLALVKVAHAYAEKSKISVRNIRRDGMDHL 140 LNP EG Q+++ +P TEE R VA Y +KI VR+ ++ +D + Sbjct: 31 LNPGLLETAEGCKQLIKQLLPALQTGTEELRSLYNTVATLYCVHAKIEVRDT-KEALDKI 89 Query: 141 KKSRKSGKASEDMVASLENDIQ--KITDS 167 E+ ++ +Q ++ D Sbjct: 90 ----------EEEQKQVQQKMQPTEMADK 108 >gi|301631117|ref|XP_002944653.1| PREDICTED: myomegalin-like [Xenopus (Silurana) tropicalis] Length = 331 Score = 35.0 bits (80), Expect = 4.2, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 6/85 (7%) Query: 102 PVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDI 161 +P+ + E R ++ + I RD L+ +K +S + ++E D+ Sbjct: 87 SLPQLSNENR-----ALREENLSLQVRINQISRDYFKELENLQKLLSSSRAQLKNVETDL 141 Query: 162 QKITDSTIKNIDSFFEEKKKEIMHF 186 ++ T + K + ++K++EI+H Sbjct: 142 EQKTQES-KKLQEELDQKQQEILHL 165 >gi|161408081|dbj|BAF94144.1| heat shock protein 70C [Alligator mississippiensis] Length = 672 Score = 35.0 bits (80), Expect = 4.2, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 19/95 (20%) Query: 97 QVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGK-------- 148 Q++ +++ +VK A YAE+ + R R + ++ + + Sbjct: 543 QIVIQSSGGLSKDEIENMVKNAEKYAEEDRR--RKERVEAVNMAEGIIHDSESKMEEFKN 600 Query: 149 -ASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 ED L+ + I + K E Sbjct: 601 QLPEDECNKLKEE--------IAKMRELLARKDTE 627 >gi|153939381|ref|YP_001392471.1| TP901 family phage tail tape measure protein [Clostridium botulinum F str. Langeland] gi|152935277|gb|ABS40775.1| phage tail tape measure protein, TP901 family [Clostridium botulinum F str. Langeland] Length = 1826 Score = 35.0 bits (80), Expect = 4.3, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 20/91 (21%) Query: 112 LALVKVAHAYAEKSKI-------SVRNIRRDGMDHLKKSRKS-----GKASEDMVASLEN 159 VK A E +++ +V++ ++ D++ K ++ + ED + E Sbjct: 1512 EETVK-AREEFENARVELENMANAVKDAAKNLSDYIDKFKQDIANALKERYEDELKLQEE 1570 Query: 160 DI-------QKITDSTIKNIDSFFEEKKKEI 183 I +K D +IK ID ++ K K I Sbjct: 1571 SINSQIQNLEKWKDESIKRIDDVYDAKIKAI 1601 >gi|242029750|gb|ACS76902.1| gag protein [Human immunodeficiency virus 1] Length = 454 Score = 35.0 bits (80), Expect = 4.3, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 22/89 (24%) Query: 90 LNP----IVEG--QVLRIPVPET---TEERRLALVKVAHAYAEKSKISVRNIRRDGMDHL 140 LNP EG Q+++ +P TEE R VA Y +KI VR+ ++ +D + Sbjct: 29 LNPGLLETAEGCKQLIKQLLPALQTGTEELRSLYNTVATLYCVHAKIEVRDT-KEALDKI 87 Query: 141 KKSRKSGKASEDMVASLENDIQ--KITDS 167 E+ ++ +Q ++ D Sbjct: 88 ----------EEEQKQVQQKMQPTEMADK 106 >gi|317064482|ref|ZP_07928967.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] gi|313690158|gb|EFS26993.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] Length = 229 Score = 35.0 bits (80), Expect = 4.3, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%) Query: 138 DHLKKSRKSGKASED--MVASLENDIQKITDSTIKNIDSFFEEKKKE 182 +KK +K ED + SL + I I IK I+ ++K+KE Sbjct: 165 KRIKKMKKRVDKIEDPKELKSLVDKIS-IYKKEIKEIEQLLKDKEKE 210 >gi|261332474|emb|CBH15469.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972] Length = 413 Score = 35.0 bits (80), Expect = 4.3, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 9/72 (12%) Query: 105 ETTEERRLALVKVAHA-----YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLEN 159 + EE+R AL A + K + IRR+ L+ RK + +D+ A Sbjct: 168 KMEEEKRQALEDERKRVSMGRKAIEVKEELDKIRREA--ELEAVRKQKQ--QDLAARRRV 223 Query: 160 DIQKITDSTIKN 171 IQ +TD I+ Sbjct: 224 RIQILTDKFIRE 235 >gi|151945597|gb|EDN63838.1| structural maintenance of chromosomes [Saccharomyces cerevisiae YJM789] Length = 1093 Score = 35.0 bits (80), Expect = 4.3, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 13/76 (17%) Query: 112 LALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKN 171 + + E++K ++R I K K + +LEN ++++T+ Sbjct: 279 KEKLNIYKEEYERAKANLRAI-----------LKDKKPFANTKKTLENQVEELTEKCSLK 327 Query: 172 IDSFFEEKKK--EIMH 185 D F + K+K EI Sbjct: 328 TDEFLKAKEKINEIFE 343 >gi|257470271|ref|ZP_05634362.1| hypothetical protein FulcA4_13087 [Fusobacterium ulcerans ATCC 49185] Length = 234 Score = 35.0 bits (80), Expect = 4.4, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%) Query: 138 DHLKKSRKSGKASED--MVASLENDIQKITDSTIKNIDSFFEEKKKE 182 +KK +K ED + SL + I I IK I+ ++K+KE Sbjct: 170 KRIKKMKKRVDKIEDPKELKSLVDKIS-IYKKEIKEIEQLLKDKEKE 215 >gi|296005416|ref|XP_002809030.1| SNARE protein, putative [Plasmodium falciparum 3D7] gi|109692333|gb|ABG38003.1| SNARE protein [Plasmodium falciparum] gi|225631972|emb|CAX64311.1| SNARE protein, putative [Plasmodium falciparum 3D7] Length = 221 Score = 35.0 bits (80), Expect = 4.4, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 36/79 (45%), Gaps = 7/79 (8%) Query: 112 LALVKVAHAYAEKSKISVRN---IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDST 168 + E + ++ I+ + D LKK + +A D ++ ++ D+ ++ D Sbjct: 119 KLFAQKCRGMYEHVRQDLKEGMLIQNELNDLLKKYQNPSEA--DKLSRVQKDLDEVKDVM 176 Query: 169 IKNIDSFFEEKKK--EIMH 185 +KNI+ + +K ++M Sbjct: 177 LKNIEDLLQRGEKLDDLMK 195 >gi|332520906|ref|ZP_08397366.1| hypothetical protein LacalDRAFT_1979 [Lacinutrix algicola 5H-3-7-4] gi|332043436|gb|EGI79632.1| hypothetical protein LacalDRAFT_1979 [Lacinutrix algicola 5H-3-7-4] Length = 1066 Score = 35.0 bits (80), Expect = 4.5, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 15/73 (20%) Query: 105 ETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKI 164 ++ E+ R + AE K + + KK S + +I K Sbjct: 917 KSIEDLRQTMANATKQLAESKKTA---------EKFKK-----NLSSLDKKKYKEEI-KA 961 Query: 165 TDSTIKNIDSFFE 177 + IK ID F Sbjct: 962 SKEIIKQIDEQFA 974 >gi|302680831|ref|XP_003030097.1| hypothetical protein SCHCODRAFT_110511 [Schizophyllum commune H4-8] gi|300103788|gb|EFI95194.1| hypothetical protein SCHCODRAFT_110511 [Schizophyllum commune H4-8] Length = 938 Score = 35.0 bits (80), Expect = 4.6, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 36/86 (41%), Gaps = 12/86 (13%) Query: 100 RIPVPETTE-ERRLALVKVAHAYAEKSKISVRNIRRDGM---DHLKKSRKSGKASEDMVA 155 R P + + + L K+ AE + + +N + + + + K+ K G+ + Sbjct: 197 RATTPASISADVQDELEKL---RAELAIVKQKNAQAEAILLEEKSKRWGKDGEIA----- 248 Query: 156 SLENDIQKITDSTIKNIDSFFEEKKK 181 L++ + K T + I + E K+ Sbjct: 249 HLKDTLSKTTANYIAQTNKLREAKEA 274 >gi|117950009|gb|ABK58389.1| pol protein [Human immunodeficiency virus 1] Length = 342 Score = 35.0 bits (80), Expect = 4.6, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 18/98 (18%) Query: 39 DLVKVEAYGSHVPLNQVANVTV-LEPRMLVVSVWDKEMVASV-------ERGIHESNLGL 90 D + VE YG + V V P V++ + M+ + I + L Sbjct: 60 DQILVEIYGKK----ALGTVLVGPTP----VNIIGRNMLTQIGCTLNFPISPIETVPVKL 111 Query: 91 NPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 P ++G ++ TEE+ AL + E+ KIS Sbjct: 112 KPGMDGPKVKQW--PLTEEKIKALTAICKEMEEEGKIS 147 >gi|327262499|ref|XP_003216061.1| PREDICTED: basic leucine zipper transcriptional factor ATF-like 3-like [Anolis carolinensis] Length = 115 Score = 35.0 bits (80), Expect = 4.7, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 EK++++ + R+ K + + E SL+ +I K+TD +K+++ +K Sbjct: 32 EKNRVAAQRSRKKQTQKADKLHEEYECLEQENTSLKKEISKLTDE-LKHLNEVLRNHEK 89 >gi|242029758|gb|ACS76906.1| gag protein [Human immunodeficiency virus 1] Length = 454 Score = 35.0 bits (80), Expect = 4.8, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 22/89 (24%) Query: 90 LNP----IVEG--QVLRIPVPET---TEERRLALVKVAHAYAEKSKISVRNIRRDGMDHL 140 LNP EG Q+++ +P TEE R VA Y +KI VR+ ++ +D + Sbjct: 29 LNPGLLETAEGCKQLIKQLLPALQTGTEELRSLYNTVATLYCVHAKIEVRDT-KEALDKI 87 Query: 141 KKSRKSGKASEDMVASLENDIQ--KITDS 167 E+ ++ +Q ++ D Sbjct: 88 ----------EEEQKQVQQKMQPTEMADK 106 >gi|291223764|ref|XP_002731878.1| PREDICTED: tripartite motif protein 2-like [Saccoglossus kowalevskii] Length = 807 Score = 35.0 bits (80), Expect = 4.8, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 13/70 (18%) Query: 122 AEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQ--------KITDSTIKNID 173 AE+ K ++N+ ++ LK K + + + ++IQ KITD I+ Sbjct: 201 AEEYKRQLKNL----LEQLKAKEKQLEMKKAAAKNTPDEIQTHCEAEKKKITDKATGVIE 256 Query: 174 SFFEEKKKEI 183 + +KE+ Sbjct: 257 KVRSD-EKEL 265 >gi|154320842|ref|XP_001559737.1| hypothetical protein BC1G_01893 [Botryotinia fuckeliana B05.10] gi|150853582|gb|EDN28774.1| hypothetical protein BC1G_01893 [Botryotinia fuckeliana B05.10] Length = 508 Score = 35.0 bits (80), Expect = 4.9, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 6/62 (9%) Query: 100 RIPVPET----TEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVA 155 R+P+P E R ++ + AE K+ V I + ++ L K + +D V Sbjct: 364 RLPIPTNFGDGDNESRTEIIARGKSKAEGGKVEV--ISQKALEQLDLDPKMIEKLQDEVK 421 Query: 156 SL 157 L Sbjct: 422 KL 423 >gi|123613|sp|P24629|HSP71_SOLLC RecName: Full=Heat shock cognate 70 kDa protein 1 gi|19256|emb|CAA37970.1| heat shock protein cognate 70 [Solanum lycopersicum] Length = 650 Score = 35.0 bits (80), Expect = 4.9, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 14/92 (15%) Query: 105 ETTEERRLALVKVAHAY-AE--------KSKISVRNIRRDGMDHLKKSRKSGKASEDMVA 155 ++E +V+ A Y AE ++K S+ N + + +K + K S D Sbjct: 517 RLSKEEIEKMVQEAEKYKAEDEELKKKVEAKNSLENYAYNMRNTVKDEKIGSKLSSDDKK 576 Query: 156 SLENDIQK----ITDSTIKNIDSFFEEKKKEI 183 +E+ + + + + + +D FE+K KE+ Sbjct: 577 KIEDAVDQAISWLESNQLAEVDE-FEDKMKEL 607 >gi|262202013|ref|YP_003273221.1| chromosome segregation protein SMC [Gordonia bronchialis DSM 43247] gi|262085360|gb|ACY21328.1| chromosome segregation protein SMC [Gordonia bronchialis DSM 43247] Length = 1217 Score = 35.0 bits (80), Expect = 4.9, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 18/106 (16%) Query: 80 ERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS------VRNIR 133 E+ + + + ++ + R+ + T E R L K AE ++ + +R+ R Sbjct: 175 EKAVRKLD-----AMQANLARLT--DLTAELRRQL-KPLGRQAEVARRAQTVQADLRDAR 226 Query: 134 -RDGMDHL---KKSRKSGKASEDMVASLENDIQKITDSTIKNIDSF 175 R D L + A ED V ++++ D + Sbjct: 227 LRLAADDLVTRRAEMAEHSAVEDEVRRRQDEVSVEADRIAAEVAEH 272 >gi|226530645|ref|NP_001141422.1| protease PrlC candidate1 [Zea mays] gi|194704532|gb|ACF86350.1| unknown [Zea mays] gi|223948491|gb|ACN28329.1| unknown [Zea mays] gi|224034233|gb|ACN36192.1| unknown [Zea mays] Length = 698 Score = 35.0 bits (80), Expect = 4.9, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 23/88 (26%) Query: 117 VAHAYAEKSKISVRN---------IRRDGMD-HLKKSRKSGKASEDMVAS----LENDIQ 162 + E K ++RN R+ ++ +K++ SG A ED +E +++ Sbjct: 105 QSKPIYEAFK-AIRNSSNWDSLSDARKRIVEAQIKEAVLSGVALEDEQRKKFNQIEQELE 163 Query: 163 KITDST-------IKNIDSFFEEKKKEI 183 K+T K + +K KEI Sbjct: 164 KLTQKFSENVLDATKKFEKLITDK-KEI 190 >gi|388205|gb|AAA19677.1| putative [Streptococcus ferus] Length = 430 Score = 35.0 bits (80), Expect = 4.9, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Query: 132 IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 +R+ + LKK S K ED ++ LE + + T IK IDS E+ E+ Sbjct: 258 LRKQYQEELKKLESSKKPLEDDLSHLEELLDEKTKEYIK-IDSETSERLSEL 308 >gi|242029754|gb|ACS76904.1| gag protein [Human immunodeficiency virus 1] gi|242029766|gb|ACS76910.1| gag protein [Human immunodeficiency virus 1] gi|242029768|gb|ACS76911.1| gag protein [Human immunodeficiency virus 1] gi|242029786|gb|ACS76920.1| gag protein [Human immunodeficiency virus 1] Length = 454 Score = 35.0 bits (80), Expect = 5.0, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 22/89 (24%) Query: 90 LNP----IVEG--QVLRIPVPET---TEERRLALVKVAHAYAEKSKISVRNIRRDGMDHL 140 LNP EG Q+++ +P TEE R VA Y +KI VR+ ++ +D + Sbjct: 29 LNPGLLETAEGCKQLIKQLLPALQTGTEELRSLYNTVATLYCVHAKIEVRDT-KEALDKI 87 Query: 141 KKSRKSGKASEDMVASLENDIQ--KITDS 167 E+ ++ +Q ++ D Sbjct: 88 ----------EEEQKQVQQKMQPTEMADK 106 >gi|225870143|ref|YP_002746090.1| membrane protein [Streptococcus equi subsp. equi 4047] gi|225699547|emb|CAW93138.1| putative membrane protein [Streptococcus equi subsp. equi 4047] Length = 515 Score = 35.0 bits (80), Expect = 5.0, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 15/90 (16%) Query: 105 ETTEERRLALVKVAHAYAEKS-------------KISVRNIRRDGMDHLKKSRKSGKASE 151 E +++ + K A EK K ++++ D +D LK+ K K ++ Sbjct: 152 ELSKDDISKMEKEAKELQEKFDKLNGELKDKDKQKEKIKDLE-DEIDSLKEKMKKDKGNK 210 Query: 152 DMVASLENDIQKITDSTIKNIDSFFEEKKK 181 D+ ++ +I K+TD +K ++ E KK Sbjct: 211 DLSEDMKKEIDKLTDK-VKELEKKATETKK 239 >gi|242029788|gb|ACS76921.1| gag protein [Human immunodeficiency virus 1] Length = 454 Score = 35.0 bits (80), Expect = 5.2, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 22/89 (24%) Query: 90 LNP----IVEG--QVLRIPVPET---TEERRLALVKVAHAYAEKSKISVRNIRRDGMDHL 140 LNP EG Q+++ +P TEE R VA Y +KI VR+ ++ +D + Sbjct: 29 LNPGLLETAEGCKQLIKQLLPALQTGTEELRSLYNTVATLYCVHAKIEVRDT-KEALDKI 87 Query: 141 KKSRKSGKASEDMVASLENDIQ--KITDS 167 E+ ++ +Q ++ D Sbjct: 88 ----------EEEQKQVQQKMQPTEMADK 106 >gi|210620879|ref|ZP_03292296.1| hypothetical protein CLOHIR_00239 [Clostridium hiranonis DSM 13275] gi|210155091|gb|EEA86097.1| hypothetical protein CLOHIR_00239 [Clostridium hiranonis DSM 13275] Length = 1084 Score = 35.0 bits (80), Expect = 5.2, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 1/58 (1%) Query: 117 VAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDS 174 A +K++ + + +D K+ K+ ++D END+ K + IK I+ Sbjct: 470 KAQKEFKKAEEEIAKNEKKLVDSEKELEKAKNEAKDEFKKAENDL-KEAEDEIKKIEK 526 >gi|71019415|ref|XP_759938.1| hypothetical protein UM03791.1 [Ustilago maydis 521] gi|119364593|sp|P18694|HSP72_USTMA RecName: Full=Heat shock 70 kDa protein 2 gi|46099593|gb|EAK84826.1| hypothetical protein UM03791.1 [Ustilago maydis 521] Length = 645 Score = 35.0 bits (80), Expect = 5.2, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 41/104 (39%), Gaps = 14/104 (13%) Query: 93 IVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS-------------VRNIRRDGMDH 139 E +R + E+ ++K A +AE+ K + + N+R + Sbjct: 495 KSEKITIRNDKGRLSSEQIEEMLKQAEQFAEEDKQALERTQAKNGLESYIYNVRNTTNEP 554 Query: 140 LKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEI 183 K + E + ++ I+ + +T + D ++K+KEI Sbjct: 555 QLKDKLEAADKEALEKIVKEGIEWLDSNTTASTDE-LKDKQKEI 597 >gi|18466722|ref|NP_569529.1| hypothetical protein HCM2.0057c [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16506038|emb|CAD09924.1| hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] Length = 1527 Score = 35.0 bits (80), Expect = 5.2, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 19/90 (21%) Query: 116 KVAHAYAEKSKISVR-----------NIRRDGMDHLKKSRKSGKASEDMVASLENDI-QK 163 ++A AE +R R++ +D ++K S+D L + +K Sbjct: 726 RLAKEAAESQIEKIRADNQVFSATFVKARQEALDKIQKINDDKSLSDDEKNKLLAPLREK 785 Query: 164 ITDST----IKNIDSFFEEK---KKEIMHF 186 + S K +D K +K+I HF Sbjct: 786 VNKSYLEPAQKLVDDLSSRKNATEKQIAHF 815 >gi|260576328|ref|ZP_05844319.1| valyl-tRNA synthetase [Rhodobacter sp. SW2] gi|259021399|gb|EEW24704.1| valyl-tRNA synthetase [Rhodobacter sp. SW2] Length = 998 Score = 35.0 bits (80), Expect = 5.3, Method: Composition-based stats. Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVS 34 +ID+ K R+ T+ L+KD+ LR GR++ Sbjct: 928 IIDIAEEKARLSKTLEKLEKDLNGLR-GRLN 957 >gi|68521984|gb|AAY98586.1| gag protein [Human immunodeficiency virus 1] Length = 490 Score = 35.0 bits (80), Expect = 5.3, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 17/91 (18%) Query: 90 LNP----IVEG--QVLRIPVPET---TEERRLALVKVAHAYAEKSKISVRNIRRDGMDHL 140 LNP EG Q+++ P TEE R VA Y KI VR+ ++ +D + Sbjct: 46 LNPGLLETSEGCKQIIKQLHPALQTGTEELRSLYNTVATLYCVHKKIEVRDT-KEALDKI 104 Query: 141 -----KKSRKSGKASEDMVASLEND--IQKI 164 K +K+ +A ED +N +Q + Sbjct: 105 EEEQNKSQQKTQQAKEDDRKISQNYPIVQNL 135 >gi|308476271|ref|XP_003100352.1| hypothetical protein CRE_22526 [Caenorhabditis remanei] gi|308265094|gb|EFP09047.1| hypothetical protein CRE_22526 [Caenorhabditis remanei] Length = 2369 Score = 35.0 bits (80), Expect = 5.3, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 7/55 (12%) Query: 138 DHLKKSRKSGKASEDMVASLENDI-------QKITDSTIKNIDSFFEEKKKEIMH 185 L+K+ K S+D + ++ +KI +S K I+ +E+++EI+ Sbjct: 2280 KSLEKAENELKISQDQQKKMVKELSDLKEENKKIVESEAKKIEKLSKEQEEEILK 2334 >gi|302916805|ref|XP_003052213.1| hypothetical protein NECHADRAFT_100132 [Nectria haematococca mpVI 77-13-4] gi|256733152|gb|EEU46500.1| hypothetical protein NECHADRAFT_100132 [Nectria haematococca mpVI 77-13-4] Length = 1472 Score = 35.0 bits (80), Expect = 5.4, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 5/59 (8%) Query: 130 RNIRRDGMDHLKKSRKSGKASED---MVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 R IRR D + + S D +L+ +Q +TD + + S +K IM Sbjct: 685 RRIRR-IQDDIDSHPDAALISGDSDAERRALKRQLQNLTDK-VPELASQVRRTEKAIME 741 >gi|47575770|ref|NP_001001229.1| heat shock 70kDa protein 9 (mortalin) [Xenopus (Silurana) tropicalis] gi|45708908|gb|AAH67910.1| heat shock 70kDa protein 9 (mortalin) [Xenopus (Silurana) tropicalis] gi|89272823|emb|CAJ82069.1| heat shock 70kDa protein 9A [Xenopus (Silurana) tropicalis] Length = 670 Score = 35.0 bits (80), Expect = 5.4, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 15/93 (16%) Query: 97 QVLRIPVPETTEERRLALVKVAHAYAEKSK------ISVRNIRRDGMDHLKKSRKSGK-A 149 Q++ +++ +VK A YAE+ + +V N D K + Sbjct: 538 QIVIQSSGGLSKDDIENMVKNAEKYAEEDRRRKERVEAVNNAEGIIHDTESKMEEFKDQL 597 Query: 150 SEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 D L+ +I K + K +E Sbjct: 598 PADECNKLKEEISK--------VKELLTRKDEE 622 >gi|227204467|dbj|BAH57085.1| AT1G59900 [Arabidopsis thaliana] gi|227204471|dbj|BAH57087.1| AT1G59900 [Arabidopsis thaliana] Length = 107 Score = 35.0 bits (80), Expect = 5.5, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 3/53 (5%) Query: 125 SKISVRNIR--RDGMDHLKKSRKSGKA-SEDMVASLENDIQKITDSTIKNIDS 174 ++ + +R RD ++ +KK S +E + +E +I+K D I Sbjct: 20 TRDEISGVRQERDPIERIKKLVLSHDLATEKELKDMEKEIRKEVDDAIAKAKD 72 >gi|194883931|ref|XP_001976050.1| GG22641 [Drosophila erecta] gi|190659237|gb|EDV56450.1| GG22641 [Drosophila erecta] Length = 3148 Score = 35.0 bits (80), Expect = 5.5, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 58/175 (33%), Gaps = 46/175 (26%) Query: 43 VEAY--GSHVPLNQVANVTVLEPRMLVVSVWD--KEMVASVERGIHESNLGLNP---IVE 95 V Y GS PL V +L + +E + R I S L P + Sbjct: 981 VTYYAPGSSTPLKSNGQVFA----ILEQQPSNLSRENFSFSARAIVGSFLQPAPPPYAND 1036 Query: 96 GQVLRIP---------------VPETTEERRLALVKVAHAYAEKSKIS----VRN---IR 133 G+ +R+ E+R+ + K A + K+ RN R Sbjct: 1037 GEYIRMTDEDVAKRLEDLKVFTRQTLNVEQRIEIAKQQQAMRDAKKLQKEELARNKEKAR 1096 Query: 134 RDGMDHLKKSRKSGKA----SEDMVASLENDIQKITDSTIKNIDSFFE---EKKK 181 ++ L++ RK + + + + ++ ++ + + EK+K Sbjct: 1097 QEKNSKLEQQRKDKELKNQQAVEERKKRQEELDRL------KQEELLKKQQEKEK 1145 >gi|156546754|ref|XP_001605252.1| PREDICTED: similar to ATP-binding cassette sub-family A member 3, putative [Nasonia vitripennis] Length = 1589 Score = 34.6 bits (79), Expect = 5.5, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 47/124 (37%), Gaps = 17/124 (13%) Query: 18 ISFLKKDMMTLRTGRVSPSMLDLVKVEAY-GSHVPL---NQVANVTVLEPRMLVVSVWD- 72 I LKK+ T G+ L + V+ Y G L N T++ ++S D Sbjct: 412 IRGLKKEFRTHLFGKSKVQALRGISVDFYKGQITALLGHNGAGKTTLMSILTGMISPSDG 471 Query: 73 -----KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKI 127 + V E + +++GL P + + P + ++ + KSK Sbjct: 472 AVYINGKNVKE-ESNVLMNDIGLCPQED-----MLFPTLSVAEQIEFFGMLKGK-NKSKA 524 Query: 128 SVRN 131 ++++ Sbjct: 525 AIKH 528 >gi|262340876|ref|YP_003283731.1| putative outer membrane protein [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272213|gb|ACY40121.1| putative outer membrane protein [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 827 Score = 34.6 bits (79), Expect = 5.6, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 28/41 (68%) Query: 123 EKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQK 163 E ++ V+ IR++ ++KK + K S+D++ +++NDIQ+ Sbjct: 116 EIHEVQVKGIRKEQFSNIKKLKSGDKISDDLIQTIKNDIQE 156 >gi|269139197|ref|YP_003295898.1| pyruvate kinase [Edwardsiella tarda EIB202] gi|267984858|gb|ACY84687.1| pyruvate kinase [Edwardsiella tarda EIB202] gi|304559113|gb|ADM41777.1| Pyruvate kinase [Edwardsiella tarda FL6-60] Length = 470 Score = 34.6 bits (79), Expect = 5.7, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 52/144 (36%), Gaps = 15/144 (10%) Query: 39 DLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQV 98 D V V G L ++ N +++ ++ + V D V + ++ +LG N V Sbjct: 104 DRVAVTYPGFAADL-RIGNTVLVDDGLIGMEVTDVTESTVVCKVLNNGDLGENKGVNLPG 162 Query: 99 LRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLE 158 + I +P E+ + LV E+ V ++K + E + A Sbjct: 163 VSIQLPALAEKDKRDLV----FGCEQGVDFV------AASFIRKRADVLEIREHLKAHGG 212 Query: 159 NDIQKITD----STIKNIDSFFEE 178 IQ I+ + N D E Sbjct: 213 EQIQIISKIENQEGLNNFDEILEA 236 >gi|160887945|ref|ZP_02068948.1| hypothetical protein BACUNI_00349 [Bacteroides uniformis ATCC 8492] gi|156862631|gb|EDO56062.1| hypothetical protein BACUNI_00349 [Bacteroides uniformis ATCC 8492] Length = 1036 Score = 34.6 bits (79), Expect = 5.7, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 13/72 (18%) Query: 115 VKVAHAYAEKSKISVRNIRRDGMDHLKKS-RKSGKASEDMVASLENDIQKITDSTIKNID 173 V A A ++K + L K+ G S+D + +L+ ++Q D + ++D Sbjct: 45 VNDAKTAANEAKD-------KAQEALDKAGSAEGGVSDDDLKALKKELQDQIDK-LASLD 96 Query: 174 ----SFFEEKKK 181 K++ Sbjct: 97 IVNQKIAALKEE 108 >gi|317477792|ref|ZP_07936983.1| hypothetical protein HMPREF1007_00099 [Bacteroides sp. 4_1_36] gi|316906050|gb|EFV27813.1| hypothetical protein HMPREF1007_00099 [Bacteroides sp. 4_1_36] Length = 1043 Score = 34.6 bits (79), Expect = 5.7, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 13/72 (18%) Query: 115 VKVAHAYAEKSKISVRNIRRDGMDHLKKS-RKSGKASEDMVASLENDIQKITDSTIKNID 173 V A A ++K + L K+ G S+D + +L+ ++Q D + ++D Sbjct: 52 VNDAKTAANEAKD-------KAQEALDKAGSAEGGVSDDDLKALKKELQDQIDK-LASLD 103 Query: 174 ----SFFEEKKK 181 K++ Sbjct: 104 IVNQKIAALKEE 115 >gi|211906496|gb|ACJ11741.1| heat shock protein 70 [Gossypium hirsutum] Length = 648 Score = 34.6 bits (79), Expect = 5.8, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 14/92 (15%) Query: 105 ETTEERRLALVKVA---------HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVA 155 ++E +V+ A H ++K ++ N + + +K + K S D Sbjct: 515 RLSKEEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLSPDDKK 574 Query: 156 SLENDIQK----ITDSTIKNIDSFFEEKKKEI 183 +E+ I++ + + + D FE+K KE+ Sbjct: 575 RIEDAIEEAIQWLDSNQLAEADE-FEDKMKEL 605 >gi|242029802|gb|ACS76928.1| gag protein [Human immunodeficiency virus 1] Length = 454 Score = 34.6 bits (79), Expect = 5.9, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 22/89 (24%) Query: 90 LNP----IVEG--QVLRIPVPET---TEERRLALVKVAHAYAEKSKISVRNIRRDGMDHL 140 LNP EG Q+++ +P TEE R VA Y +KI VR+ ++ +D + Sbjct: 29 LNPGPLETAEGCKQLIKQLLPALQTGTEELRSLYNTVATLYCVHAKIEVRDT-KEALDKI 87 Query: 141 KKSRKSGKASEDMVASLENDIQ--KITDS 167 E+ ++ +Q ++ D Sbjct: 88 ----------EEEQKQVQQKMQPTEMADK 106 >gi|255722123|ref|XP_002545996.1| conserved hypothetical protein [Candida tropicalis MYA-3404] gi|240136485|gb|EER36038.1| conserved hypothetical protein [Candida tropicalis MYA-3404] Length = 563 Score = 34.6 bits (79), Expect = 6.0, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 3/47 (6%) Query: 129 VRN-IRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDS 174 VR+ R+D + +KK K + V S + ++QK+T K ++ Sbjct: 218 VRDDARKDYNEAIKKYVNFIKKRDPRVKSGQEELQKLTKK--KQLEE 262 >gi|145297113|ref|YP_001139933.1| hypothetical protein cgR_p0018 [Corynebacterium glutamicum R] gi|140847060|dbj|BAF56031.1| hypothetical protein [Corynebacterium glutamicum R] Length = 1796 Score = 34.6 bits (79), Expect = 6.0, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 3/67 (4%) Query: 120 AYAEKSKISVRNIRRDGMDHLKKSRKS-GKASEDMVASLEN--DIQKITDSTIKNIDSFF 176 E+++ +V R DG + + + K+ KA ED A E QK + + + Sbjct: 1127 EKVEEAEKAVARAREDGSEKIADAEKNLTKAREDEKADAEKIEAAQKRLNEAMADAPEKV 1186 Query: 177 EEKKKEI 183 E+ +K + Sbjct: 1187 EKAEKAL 1193 >gi|170098296|ref|XP_001880367.1| predicted protein [Laccaria bicolor S238N-H82] gi|164644805|gb|EDR09054.1| predicted protein [Laccaria bicolor S238N-H82] Length = 606 Score = 34.6 bits (79), Expect = 6.0, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 11/77 (14%) Query: 115 VKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLE----NDIQKITDSTIK 170 V+ E+ RN+RR L + K D LE + I++ + +I+ Sbjct: 496 VRNVKRKLEEDNEHERNLRRKLQRKLDELEKER----DDARRLETYALDQIKR--EVSIR 549 Query: 171 NIDSFFEEKKKEI-MHF 186 EK+ E+ M Sbjct: 550 RKAEERAEKEHELRMEL 566 >gi|118368041|ref|XP_001017230.1| hypothetical protein TTHERM_00194770 [Tetrahymena thermophila] gi|89298997|gb|EAR96985.1| hypothetical protein TTHERM_00194770 [Tetrahymena thermophila SB210] Length = 1213 Score = 34.6 bits (79), Expect = 6.1, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 46/110 (41%), Gaps = 17/110 (15%) Query: 81 RGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI-----RRD 135 + + + +L N + + LRI +E R L E+ + +++I R + Sbjct: 967 KTLQDKDLDANKARQEERLRI----IEQENRQKLY-----ELEEHRSKIKDITSHLKRAE 1017 Query: 136 GMDHLKKSRKSGKASE-DMVASLENDIQKITD--STIKNIDSFFEEKKKE 182 D ++ R + ++ D L+ +I++I + + E K++E Sbjct: 1018 AEDQIQVFRNTMLQNQLDEEKKLQKEIEQIQKDRKAQRELQQDLEFKQQE 1067 >gi|161076538|ref|NP_523701.3| toutatis, isoform A [Drosophila melanogaster] gi|157400284|gb|AAF58638.3| toutatis, isoform A [Drosophila melanogaster] Length = 2999 Score = 34.6 bits (79), Expect = 6.2, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 58/175 (33%), Gaps = 46/175 (26%) Query: 43 VEAY--GSHVPLNQVANVTVLEPRMLVVSVWD--KEMVASVERGIHESNLGLNP---IVE 95 V Y GS PL V +L + +E + R I S L P + Sbjct: 981 VTYYAPGSTTPLKSNGQVFA----ILEQQPSNLSRENFSFSARAIVGSFLQPAPPPYAND 1036 Query: 96 GQVLRIP---------------VPETTEERRLALVKVAHAYAEKSKIS----VRN---IR 133 G+ +R+ E+R+ + K A + K+ RN R Sbjct: 1037 GEYIRMTDEDVAKRLEDLKVFTRQTLNVEQRIEIAKQQQAMRDAKKLQKEELARNKEKAR 1096 Query: 134 RDGMDHLKKSRKSGKA----SEDMVASLENDIQKITDSTIKNIDSFFE---EKKK 181 ++ L++ RK + + + + ++ ++ + + EK+K Sbjct: 1097 QEKNSKLEQQRKDKELKNQQAVEERKKRQEELDRL------KQEELLKKQQEKEK 1145 >gi|47168783|pdb|1RGZ|A Chain A, Enterobacter Cloacae Gc1 Class C Beta-Lactamase Complexed With Transition-State Analog Of Cefotaxime gi|55669553|pdb|1Q2Q|A Chain A, Enterobacter Cloacae Gc1 Class C Beta-Lactamase Complexed With Penem Way185229 Length = 363 Score = 34.6 bits (79), Expect = 6.2, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 5/60 (8%) Query: 23 KDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERG 82 +D +R RVSP MLD +AYG + +AN + M +V D + + Sbjct: 203 RDGKAVRAVRVSPGMLD---AQAYGVKTNVQDMANWVM--ANMAPENVADASLKQGIALA 257 >gi|1060878|dbj|BAA07922.1| class C beta-lactamase precursor [Enterobacter cloacae] Length = 384 Score = 34.6 bits (79), Expect = 6.2, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 5/60 (8%) Query: 23 KDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERG 82 +D +R RVSP MLD +AYG + +AN + M +V D + + Sbjct: 224 RDGKAVRAVRVSPGMLD---AQAYGVKTNVQDMANWVM--ANMAPENVADASLKQGIALA 278 >gi|5822076|pdb|1GCE|A Chain A, Structure Of The Beta-Lactamase Of Enterobacter Cloacae Gc1 gi|14488469|pdb|1GA0|A Chain A, Structure Of The E. Cloacae Gc1 Beta-Lactamase With A Cephalosporin Sulfone Inhibitor gi|40889242|pdb|1ONH|A Chain A, Gc1 Beta-Lactamase With A Penem Inhibitor Length = 364 Score = 34.6 bits (79), Expect = 6.2, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 5/60 (8%) Query: 23 KDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERG 82 +D +R RVSP MLD +AYG + +AN + M +V D + + Sbjct: 204 RDGKAVRAVRVSPGMLD---AQAYGVKTNVQDMANWVM--ANMAPENVADASLKQGIALA 258 >gi|242029794|gb|ACS76924.1| gag protein [Human immunodeficiency virus 1] Length = 454 Score = 34.6 bits (79), Expect = 6.3, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 22/89 (24%) Query: 90 LNP----IVEG--QVLRIPVPET---TEERRLALVKVAHAYAEKSKISVRNIRRDGMDHL 140 LNP +EG Q+++ P TEE R VA Y +KI VR+ ++ +D + Sbjct: 29 LNPGLLETLEGCKQIIKQLQPALQTGTEEIRSLYNTVATLYCVHAKIEVRDT-KEALDKI 87 Query: 141 KKSRKSGKASEDMVASLENDIQ--KITDS 167 E+ ++ IQ ++ D Sbjct: 88 ----------EEEQKQVQQKIQRTEMADK 106 >gi|195485690|ref|XP_002091194.1| GE13512 [Drosophila yakuba] gi|194177295|gb|EDW90906.1| GE13512 [Drosophila yakuba] Length = 3129 Score = 34.6 bits (79), Expect = 6.4, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 57/175 (32%), Gaps = 46/175 (26%) Query: 43 VEAY--GSHVPLNQVANVTVLEPRMLVVSVWD--KEMVASVERGIHESNLGLNP---IVE 95 V Y GS PL V +L + +E + R I S L P + Sbjct: 980 VTYYAPGSTTPLKSNGQVFA----ILEQQPSNLSRENFSFSARAIVGSFLQPAPPPYAND 1035 Query: 96 GQVLRIP---------------VPETTEERRLALVKVAHAYAEKSKIS----VRN---IR 133 G+ +R+ E+R+ + K A + K+ RN R Sbjct: 1036 GEYIRMTDEDVAKRLEDLKVFTRQTLNVEQRIEIAKQQQAMRDAKKLQKEELARNKEKAR 1095 Query: 134 RDGMDHLKKSRKSGKASE----DMVASLENDIQKITDSTIKNIDSFFE---EKKK 181 ++ L++ RK + + + ++ ++ + + EK+K Sbjct: 1096 QEKNSKLEQQRKDKELKNQQAIEERKKRQEELDRL------KQEELLKKQQEKEK 1144 >gi|193082941|dbj|BAG50046.1| staphylocoagulase [Staphylococcus aureus] gi|193082943|dbj|BAG50047.1| staphylocoagulase [Staphylococcus aureus] gi|193082945|dbj|BAG50048.1| staphylocoagulase [Staphylococcus aureus] Length = 627 Score = 34.6 bits (79), Expect = 6.4, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 11/75 (14%) Query: 102 PVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDI 161 V T E + K E+ R++ + +K K SED ++ Sbjct: 134 SVYNLTMEEYNEISKSLKDAEEEF-------RKNVSEVQEKEVKLKTYSEDEEEKATKEV 186 Query: 162 QKITDSTIKNIDSFF 176 + + +D+ + Sbjct: 187 YDL----VAEVDTIY 197 >gi|161076540|ref|NP_001097270.1| toutatis, isoform E [Drosophila melanogaster] gi|157400285|gb|ABV53763.1| toutatis, isoform E [Drosophila melanogaster] Length = 3131 Score = 34.6 bits (79), Expect = 6.4, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 58/175 (33%), Gaps = 46/175 (26%) Query: 43 VEAY--GSHVPLNQVANVTVLEPRMLVVSVWD--KEMVASVERGIHESNLGLNP---IVE 95 V Y GS PL V +L + +E + R I S L P + Sbjct: 981 VTYYAPGSTTPLKSNGQVFA----ILEQQPSNLSRENFSFSARAIVGSFLQPAPPPYAND 1036 Query: 96 GQVLRIP---------------VPETTEERRLALVKVAHAYAEKSKIS----VRN---IR 133 G+ +R+ E+R+ + K A + K+ RN R Sbjct: 1037 GEYIRMTDEDVAKRLEDLKVFTRQTLNVEQRIEIAKQQQAMRDAKKLQKEELARNKEKAR 1096 Query: 134 RDGMDHLKKSRKSGKA----SEDMVASLENDIQKITDSTIKNIDSFFE---EKKK 181 ++ L++ RK + + + + ++ ++ + + EK+K Sbjct: 1097 QEKNSKLEQQRKDKELKNQQAVEERKKRQEELDRL------KQEELLKKQQEKEK 1145 >gi|327183314|gb|AEA31761.1| valyl-tRNA synthetase [Lactobacillus amylovorus GRL 1118] Length = 879 Score = 34.6 bits (79), Expect = 6.4, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 4/46 (8%) Query: 138 DHLKKSRKSGKASEDMVASLENDIQKITDS-TIKNIDSFFEEKKKE 182 D L K K K ED VA E K+ + + + K+KE Sbjct: 814 DELAKMEKEEKRLEDEVARCEK---KLANKGFVDHAPEAVVNKEKE 856 >gi|325956486|ref|YP_004291898.1| valyl-tRNA synthetase [Lactobacillus acidophilus 30SC] gi|325333051|gb|ADZ06959.1| valyl-tRNA synthetase [Lactobacillus acidophilus 30SC] Length = 879 Score = 34.6 bits (79), Expect = 6.4, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 4/46 (8%) Query: 138 DHLKKSRKSGKASEDMVASLENDIQKITDS-TIKNIDSFFEEKKKE 182 D L K K K ED VA E K+ + + + K+KE Sbjct: 814 DELAKMEKEEKRLEDEVARCEK---KLANKGFVDHAPEAVVNKEKE 856 >gi|323335674|gb|EGA76957.1| Smc5p [Saccharomyces cerevisiae Vin13] Length = 989 Score = 34.6 bits (79), Expect = 6.4, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 13/76 (17%) Query: 112 LALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKN 171 + + E++K ++R I K K + +LEN ++++T+ Sbjct: 279 KEKLNIYKEEYERAKANLRAI-----------LKDKKPFANTKKTLENQVEELTEKCSLK 327 Query: 172 IDSFFEEKKK--EIMH 185 D F + K+K EI Sbjct: 328 TDEFLKAKEKINEIFE 343 >gi|307185083|gb|EFN71282.1| Mitochondrial 2-oxoglutarate/malate carrier protein [Camponotus floridanus] Length = 738 Score = 34.6 bits (79), Expect = 6.5, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 3/52 (5%) Query: 134 RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIK-NIDSFFEEKKKEIM 184 + D ++K +KS E E I IT+ I+ E K+KEI+ Sbjct: 293 QKAKDEIQKIQKSITLKEKKKKMREAQI--ITEKYEPIKIEQIREIKEKEIL 342 >gi|183190466|gb|ACC46678.1| pol protein [Human immunodeficiency virus 1] Length = 404 Score = 34.6 bits (79), Expect = 6.5, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 26/102 (25%) Query: 39 DLVKVEAYG---------SHVPLNQVA-NVTVLEPRMLV--VSVWDKEMVASVERGIHES 86 D + +E YG P+N + NV L +S I Sbjct: 60 DQIPIEIYGHKXISTVLIGPTPVNIIGRNVMTQLGCTLNFPISP------------IETV 107 Query: 87 NLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKIS 128 + L P ++G ++ TEE+ ALV++ E+ KIS Sbjct: 108 PVKLKPGMDGPKVKQW--PLTEEKIKALVEICKELEEEGKIS 147 >gi|47228744|emb|CAG07476.1| unnamed protein product [Tetraodon nigroviridis] Length = 1034 Score = 34.6 bits (79), Expect = 6.5, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 33/78 (42%), Gaps = 4/78 (5%) Query: 109 ERRLALVKVAHAYAEKSK---ISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKIT 165 E ++ E++K ++R+ + + +K+ + + ED V + I+ +T Sbjct: 228 ETTRKEIESVKKEREEAKRNLSALRHSQAPMVRKIKELDEQLQPIEDQVKAKTAAIKDVT 287 Query: 166 DSTIKNIDSFFEEKKKEI 183 K + K+KEI Sbjct: 288 LK-CKQTQDQLDRKQKEI 304 >gi|82749938|ref|YP_415679.1| staphylocoagulase precursor [Staphylococcus aureus RF122] gi|82655469|emb|CAI79857.1| staphylocoagulase precursor [Staphylococcus aureus RF122] Length = 627 Score = 34.6 bits (79), Expect = 6.5, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 11/75 (14%) Query: 102 PVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDI 161 V T E + K E+ R++ + +K K SED ++ Sbjct: 134 SVYNLTMEEYNEISKSLKDAEEEF-------RKNVSEVQEKEVKLKTYSEDEEEKATKEV 186 Query: 162 QKITDSTIKNIDSFF 176 + + +D+ + Sbjct: 187 YDL----VAEVDTIY 197 >gi|325180545|emb|CCA14951.1| conserved unknown protein putative [Albugo laibachii Nc14] Length = 5096 Score = 34.6 bits (79), Expect = 6.6, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 35/117 (29%) Query: 105 ETTEER------RLALVKVAHAYA------EKSKISVRNIR---RDGMDHLKKSRKS--- 146 + EER R + + E K +R I ++ M+ +K +K Sbjct: 4386 KMNEEREILTRLRSENTIMKKKFTSLQQDIEDQKEEIRAIEEKSKEIMETIKALKKDVVG 4445 Query: 147 --GKASE------D------MVASLENDIQK---ITDSTIKNIDSFFEEKKKEIMHF 186 + E D + +++K + D IK + E +++EI+ Sbjct: 4446 HQKEIREREETIQDKEKRIFDLKKKNQELEKFKFVLDYKIKELTRQIEPREQEIVEL 4502 >gi|325180542|emb|CCA14948.1| conserved unknown protein putative [Albugo laibachii Nc14] Length = 5053 Score = 34.6 bits (79), Expect = 6.6, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 35/117 (29%) Query: 105 ETTEER------RLALVKVAHAYA------EKSKISVRNIR---RDGMDHLKKSRKS--- 146 + EER R + + E K +R I ++ M+ +K +K Sbjct: 4386 KMNEEREILTRLRSENTIMKKKFTSLQQDIEDQKEEIRAIEEKSKEIMETIKALKKDVVG 4445 Query: 147 --GKASE------D------MVASLENDIQK---ITDSTIKNIDSFFEEKKKEIMHF 186 + E D + +++K + D IK + E +++EI+ Sbjct: 4446 HQKEIREREETIQDKEKRIFDLKKKNQELEKFKFVLDYKIKELTRQIEPREQEIVEL 4502 >gi|315038034|ref|YP_004031602.1| valyl-tRNA synthetase [Lactobacillus amylovorus GRL 1112] gi|312276167|gb|ADQ58807.1| valyl-tRNA synthetase [Lactobacillus amylovorus GRL 1112] Length = 879 Score = 34.6 bits (79), Expect = 6.6, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 4/46 (8%) Query: 138 DHLKKSRKSGKASEDMVASLENDIQKITDS-TIKNIDSFFEEKKKE 182 D L K K K ED VA E K+ + + + K+KE Sbjct: 814 DELAKMEKEEKRLEDEVARCEK---KLANKGFVDHAPEAVVNKEKE 856 >gi|290975738|ref|XP_002670599.1| predicted protein [Naegleria gruberi] gi|284084159|gb|EFC37855.1| predicted protein [Naegleria gruberi] Length = 448 Score = 34.6 bits (79), Expect = 6.6, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 53/144 (36%), Gaps = 28/144 (19%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPS---MLDLVKVEAYGSHVPLNQVANVTVLEPRML 66 +K+++ I L +++ R+S + +LD V VE + + TV + M+ Sbjct: 316 LKEQIQKGIEELAQEVSK----RLSTTENFVLD-VSVEYDKNET-----GDCTVSKIWMI 365 Query: 67 VVSVWDKEMVA-------SVERGIHESNLGLNPIVEGQVLRIPVPETT-EERRLALVKVA 118 ++ + K+ V I N P+ R+ T +E R L K Sbjct: 366 EINSFSKQASPCMFDWNDPVSNEILMGNR---PME----FRVLTKPLTLKEGREELAKDI 418 Query: 119 HAYAEKSKISVRNIRRDGMDHLKK 142 E+ +V + D KK Sbjct: 419 REMLEEINGAVPPEAEESNDEDKK 442 >gi|156537263|ref|XP_001605702.1| PREDICTED: similar to ENSANGP00000001161 [Nasonia vitripennis] Length = 807 Score = 34.6 bits (79), Expect = 6.6, Method: Composition-based stats. Identities = 7/23 (30%), Positives = 15/23 (65%) Query: 157 LENDIQKITDSTIKNIDSFFEEK 179 L +++Q++TD +K ++ E K Sbjct: 353 LLDELQRLTDEYVKEVNDTLEPK 375 >gi|115491013|ref|XP_001210134.1| predicted protein [Aspergillus terreus NIH2624] gi|114196994|gb|EAU38694.1| predicted protein [Aspergillus terreus NIH2624] Length = 561 Score = 34.6 bits (79), Expect = 6.6, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 6/91 (6%) Query: 100 RIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASE-DMVASLE 158 R P EER+ A+ + A E ++ R RR +K + + A+ D A + Sbjct: 272 RFPTQARIEERKKAMEEAKKAREEAARQ--REQRRQETKRAQKEQANDGANPMDEAAKAK 329 Query: 159 NDIQKI---TDSTIKNIDSFFEEKKKEIMHF 186 K+ K ++ + ++ M Sbjct: 330 QRADKLRRKLQKEQKRVEKAEADAERARMKV 360 >gi|325180547|emb|CCA14953.1| conserved unknown protein putative [Albugo laibachii Nc14] Length = 5061 Score = 34.6 bits (79), Expect = 6.6, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 35/117 (29%) Query: 105 ETTEER------RLALVKVAHAYA------EKSKISVRNIR---RDGMDHLKKSRKS--- 146 + EER R + + E K +R I ++ M+ +K +K Sbjct: 4386 KMNEEREILTRLRSENTIMKKKFTSLQQDIEDQKEEIRAIEEKSKEIMETIKALKKDVVG 4445 Query: 147 --GKASE------D------MVASLENDIQK---ITDSTIKNIDSFFEEKKKEIMHF 186 + E D + +++K + D IK + E +++EI+ Sbjct: 4446 HQKEIREREETIQDKEKRIFDLKKKNQELEKFKFVLDYKIKELTRQIEPREQEIVEL 4502 >gi|324518008|gb|ADY46979.1| Pyruvate dehydrogenase E1 component subunit alpha type II [Ascaris suum] Length = 396 Score = 34.6 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 31/60 (51%), Gaps = 6/60 (10%) Query: 125 SKISVRNIR--RDGMDHLK-KSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 ++ ++ +R RD + K K +G +ED + ++ +I+K D+ +K + +K+ Sbjct: 299 TREEIQEVRKTRDPITGFKDKIVTAGLVTEDELKEVDKEIRKEVDAAVKQAHT---DKEA 355 >gi|213626935|gb|AAI70424.1| LOC398083 protein [Xenopus laevis] Length = 1962 Score = 34.6 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 2/70 (2%) Query: 97 QVLRIPVPETTEERRLAL--VKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMV 154 Q +R + EE L K EK+K ++ R + + +K + SE Sbjct: 1188 QEIRQKHSQAVEELSEQLEQTKRLKGNLEKAKQALEGERNELANEVKTLLQGKGDSEHKR 1247 Query: 155 ASLENDIQKI 164 +E +Q++ Sbjct: 1248 KKVEAQLQEL 1257 >gi|129051|sp|P26268|ODPT_ASCSU RecName: Full=Pyruvate dehydrogenase E1 component subunit alpha type II, mitochondrial; Short=PDHE1-A; Flags: Precursor gi|159677|gb|AAA29377.1| pyruvate dehydrogenase type II alpha subunit [Ascaris suum] Length = 391 Score = 34.6 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 31/60 (51%), Gaps = 6/60 (10%) Query: 125 SKISVRNIR--RDGMDHLK-KSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 ++ ++ +R RD + K K +G +ED + ++ +I+K D+ +K + +K+ Sbjct: 294 TREEIQEVRKTRDPITGFKDKIVTAGLVTEDELKEVDKEIRKEVDAAVKQAHT---DKEA 350 >gi|325180539|emb|CCA14945.1| conserved unknown protein putative [Albugo laibachii Nc14] Length = 5087 Score = 34.6 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 35/117 (29%) Query: 105 ETTEER------RLALVKVAHAYA------EKSKISVRNIR---RDGMDHLKKSRKS--- 146 + EER R + + E K +R I ++ M+ +K +K Sbjct: 4377 KMNEEREILTRLRSENTIMKKKFTSLQQDIEDQKEEIRAIEEKSKEIMETIKALKKDVVG 4436 Query: 147 --GKASE------D------MVASLENDIQK---ITDSTIKNIDSFFEEKKKEIMHF 186 + E D + +++K + D IK + E +++EI+ Sbjct: 4437 HQKEIREREETIQDKEKRIFDLKKKNQELEKFKFVLDYKIKELTRQIEPREQEIVEL 4493 >gi|257066707|ref|YP_003152963.1| hypothetical protein Apre_1218 [Anaerococcus prevotii DSM 20548] gi|256798587|gb|ACV29242.1| conserved hypothetical protein [Anaerococcus prevotii DSM 20548] Length = 360 Score = 34.6 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 39/109 (35%), Gaps = 23/109 (21%) Query: 87 NLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKS 146 +L LNP + Q+++ + ER + A A + ++ L ++ + Sbjct: 217 DLALNPENKDQIIKDLTDSLS-ERAKTIADSADKEAIDNAVA-------QNSDLTEAE-A 267 Query: 147 GKASE-------DMVASLEN-------DIQKITDSTIKNIDSFFEEKKK 181 + SE D E +I K+++ +D E KK Sbjct: 268 SEVSENIYNGLQDASKEAEKAINNASEEITKLSNEASDKVDETVEGAKK 316 >gi|47847498|dbj|BAD21421.1| mFLJ00279 protein [Mus musculus] Length = 1335 Score = 34.6 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 23/52 (44%) Query: 113 ALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKI 164 K A EK+K ++ N R + + +K + SE +E +Q++ Sbjct: 581 EQTKRVKATLEKAKQTLENERGELANEVKALLQGKGDSEHKRKKVEAQLQEL 632 >gi|116203627|ref|XP_001227624.1| hypothetical protein CHGG_09697 [Chaetomium globosum CBS 148.51] gi|88175825|gb|EAQ83293.1| hypothetical protein CHGG_09697 [Chaetomium globosum CBS 148.51] Length = 1690 Score = 34.6 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 13/73 (17%) Query: 119 HAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDST------IKNI 172 A AEK + +R+D K+ + + SE LE +IQ D ++ Sbjct: 1073 KAKAEK---QITKLRKDHTKASKELEAAIRDSE----KLEAEIQNQGDKAEDYKTRVEEA 1125 Query: 173 DSFFEEKKKEIMH 185 KK+E+ Sbjct: 1126 KEALAAKKQELAE 1138 >gi|325180541|emb|CCA14947.1| conserved unknown protein putative [Albugo laibachii Nc14] Length = 5089 Score = 34.6 bits (79), Expect = 6.8, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 35/117 (29%) Query: 105 ETTEER------RLALVKVAHAYA------EKSKISVRNIR---RDGMDHLKKSRKS--- 146 + EER R + + E K +R I ++ M+ +K +K Sbjct: 4367 KMNEEREILTRLRSENTIMKKKFTSLQQDIEDQKEEIRAIEEKSKEIMETIKALKKDVVG 4426 Query: 147 --GKASE------D------MVASLENDIQK---ITDSTIKNIDSFFEEKKKEIMHF 186 + E D + +++K + D IK + E +++EI+ Sbjct: 4427 HQKEIREREETIQDKEKRIFDLKKKNQELEKFKFVLDYKIKELTRQIEPREQEIVEL 4483 >gi|325180534|emb|CCA14940.1| conserved unknown protein putative [Albugo laibachii Nc14] Length = 5056 Score = 34.6 bits (79), Expect = 6.8, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 35/117 (29%) Query: 105 ETTEER------RLALVKVAHAYA------EKSKISVRNIR---RDGMDHLKKSRKS--- 146 + EER R + + E K +R I ++ M+ +K +K Sbjct: 4377 KMNEEREILTRLRSENTIMKKKFTSLQQDIEDQKEEIRAIEEKSKEIMETIKALKKDVVG 4436 Query: 147 --GKASE------D------MVASLENDIQK---ITDSTIKNIDSFFEEKKKEIMHF 186 + E D + +++K + D IK + E +++EI+ Sbjct: 4437 HQKEIREREETIQDKEKRIFDLKKKNQELEKFKFVLDYKIKELTRQIEPREQEIVEL 4493 >gi|325180528|emb|CCA14934.1| conserved unknown protein putative [Albugo laibachii Nc14] Length = 5126 Score = 34.6 bits (79), Expect = 6.8, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 35/117 (29%) Query: 105 ETTEER------RLALVKVAHAYA------EKSKISVRNIR---RDGMDHLKKSRKS--- 146 + EER R + + E K +R I ++ M+ +K +K Sbjct: 4377 KMNEEREILTRLRSENTIMKKKFTSLQQDIEDQKEEIRAIEEKSKEIMETIKALKKDVVG 4436 Query: 147 --GKASE------D------MVASLENDIQK---ITDSTIKNIDSFFEEKKKEIMHF 186 + E D + +++K + D IK + E +++EI+ Sbjct: 4437 HQKEIREREETIQDKEKRIFDLKKKNQELEKFKFVLDYKIKELTRQIEPREQEIVEL 4493 >gi|148225656|ref|NP_001081846.1| myosin, heavy chain 9, non-muscle [Xenopus laevis] gi|3660672|gb|AAC83556.1| nonmuscle myosin II heavy chain A [Xenopus laevis] Length = 1964 Score = 34.6 bits (79), Expect = 6.8, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 2/70 (2%) Query: 97 QVLRIPVPETTEERRLAL--VKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMV 154 Q +R + EE L K EK+K ++ R + + +K + SE Sbjct: 1188 QEIRQKHSQAVEELSEQLEQTKRLKGNLEKAKQALEGERNELANEVKTLLQGKGDSEHKR 1247 Query: 155 ASLENDIQKI 164 +E +Q++ Sbjct: 1248 KKVEAQLQEL 1257 >gi|325180537|emb|CCA14943.1| conserved unknown protein putative [Albugo laibachii Nc14] Length = 5034 Score = 34.6 bits (79), Expect = 6.9, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 35/117 (29%) Query: 105 ETTEER------RLALVKVAHAYA------EKSKISVRNIR---RDGMDHLKKSRKS--- 146 + EER R + + E K +R I ++ M+ +K +K Sbjct: 4367 KMNEEREILTRLRSENTIMKKKFTSLQQDIEDQKEEIRAIEEKSKEIMETIKALKKDVVG 4426 Query: 147 --GKASE------D------MVASLENDIQK---ITDSTIKNIDSFFEEKKKEIMHF 186 + E D + +++K + D IK + E +++EI+ Sbjct: 4427 HQKEIREREETIQDKEKRIFDLKKKNQELEKFKFVLDYKIKELTRQIEPREQEIVEL 4483 >gi|325180533|emb|CCA14939.1| conserved unknown protein putative [Albugo laibachii Nc14] Length = 5055 Score = 34.6 bits (79), Expect = 6.9, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 35/117 (29%) Query: 105 ETTEER------RLALVKVAHAYA------EKSKISVRNIR---RDGMDHLKKSRKS--- 146 + EER R + + E K +R I ++ M+ +K +K Sbjct: 4388 KMNEEREILTRLRSENTIMKKKFTSLQQDIEDQKEEIRAIEEKSKEIMETIKALKKDVVG 4447 Query: 147 --GKASE------D------MVASLENDIQK---ITDSTIKNIDSFFEEKKKEIMHF 186 + E D + +++K + D IK + E +++EI+ Sbjct: 4448 HQKEIREREETIQDKEKRIFDLKKKNQELEKFKFVLDYKIKELTRQIEPREQEIVEL 4504 >gi|325180549|emb|CCA14955.1| conserved unknown protein putative [Albugo laibachii Nc14] Length = 5069 Score = 34.6 bits (79), Expect = 6.9, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 35/117 (29%) Query: 105 ETTEER------RLALVKVAHAYA------EKSKISVRNIR---RDGMDHLKKSRKS--- 146 + EER R + + E K +R I ++ M+ +K +K Sbjct: 4367 KMNEEREILTRLRSENTIMKKKFTSLQQDIEDQKEEIRAIEEKSKEIMETIKALKKDVVG 4426 Query: 147 --GKASE------D------MVASLENDIQK---ITDSTIKNIDSFFEEKKKEIMHF 186 + E D + +++K + D IK + E +++EI+ Sbjct: 4427 HQKEIREREETIQDKEKRIFDLKKKNQELEKFKFVLDYKIKELTRQIEPREQEIVEL 4483 >gi|325180548|emb|CCA14954.1| conserved unknown protein putative [Albugo laibachii Nc14] Length = 5042 Score = 34.6 bits (79), Expect = 6.9, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 35/117 (29%) Query: 105 ETTEER------RLALVKVAHAYA------EKSKISVRNIR---RDGMDHLKKSRKS--- 146 + EER R + + E K +R I ++ M+ +K +K Sbjct: 4367 KMNEEREILTRLRSENTIMKKKFTSLQQDIEDQKEEIRAIEEKSKEIMETIKALKKDVVG 4426 Query: 147 --GKASE------D------MVASLENDIQK---ITDSTIKNIDSFFEEKKKEIMHF 186 + E D + +++K + D IK + E +++EI+ Sbjct: 4427 HQKEIREREETIQDKEKRIFDLKKKNQELEKFKFVLDYKIKELTRQIEPREQEIVEL 4483 >gi|325180546|emb|CCA14952.1| conserved unknown protein putative [Albugo laibachii Nc14] Length = 5054 Score = 34.6 bits (79), Expect = 6.9, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 35/117 (29%) Query: 105 ETTEER------RLALVKVAHAYA------EKSKISVRNIR---RDGMDHLKKSRKS--- 146 + EER R + + E K +R I ++ M+ +K +K Sbjct: 4367 KMNEEREILTRLRSENTIMKKKFTSLQQDIEDQKEEIRAIEEKSKEIMETIKALKKDVVG 4426 Query: 147 --GKASE------D------MVASLENDIQK---ITDSTIKNIDSFFEEKKKEIMHF 186 + E D + +++K + D IK + E +++EI+ Sbjct: 4427 HQKEIREREETIQDKEKRIFDLKKKNQELEKFKFVLDYKIKELTRQIEPREQEIVEL 4483 >gi|325180544|emb|CCA14950.1| conserved unknown protein putative [Albugo laibachii Nc14] Length = 5057 Score = 34.6 bits (79), Expect = 6.9, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 35/117 (29%) Query: 105 ETTEER------RLALVKVAHAYA------EKSKISVRNIR---RDGMDHLKKSRKS--- 146 + EER R + + E K +R I ++ M+ +K +K Sbjct: 4367 KMNEEREILTRLRSENTIMKKKFTSLQQDIEDQKEEIRAIEEKSKEIMETIKALKKDVVG 4426 Query: 147 --GKASE------D------MVASLENDIQK---ITDSTIKNIDSFFEEKKKEIMHF 186 + E D + +++K + D IK + E +++EI+ Sbjct: 4427 HQKEIREREETIQDKEKRIFDLKKKNQELEKFKFVLDYKIKELTRQIEPREQEIVEL 4483 >gi|325180543|emb|CCA14949.1| conserved unknown protein putative [Albugo laibachii Nc14] Length = 5016 Score = 34.6 bits (79), Expect = 6.9, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 35/117 (29%) Query: 105 ETTEER------RLALVKVAHAYA------EKSKISVRNIR---RDGMDHLKKSRKS--- 146 + EER R + + E K +R I ++ M+ +K +K Sbjct: 4349 KMNEEREILTRLRSENTIMKKKFTSLQQDIEDQKEEIRAIEEKSKEIMETIKALKKDVVG 4408 Query: 147 --GKASE------D------MVASLENDIQK---ITDSTIKNIDSFFEEKKKEIMHF 186 + E D + +++K + D IK + E +++EI+ Sbjct: 4409 HQKEIREREETIQDKEKRIFDLKKKNQELEKFKFVLDYKIKELTRQIEPREQEIVEL 4465 >gi|325180540|emb|CCA14946.1| conserved unknown protein putative [Albugo laibachii Nc14] Length = 5057 Score = 34.6 bits (79), Expect = 6.9, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 35/117 (29%) Query: 105 ETTEER------RLALVKVAHAYA------EKSKISVRNIR---RDGMDHLKKSRKS--- 146 + EER R + + E K +R I ++ M+ +K +K Sbjct: 4378 KMNEEREILTRLRSENTIMKKKFTSLQQDIEDQKEEIRAIEEKSKEIMETIKALKKDVVG 4437 Query: 147 --GKASE------D------MVASLENDIQK---ITDSTIKNIDSFFEEKKKEIMHF 186 + E D + +++K + D IK + E +++EI+ Sbjct: 4438 HQKEIREREETIQDKEKRIFDLKKKNQELEKFKFVLDYKIKELTRQIEPREQEIVEL 4494 >gi|325180536|emb|CCA14942.1| conserved unknown protein putative [Albugo laibachii Nc14] Length = 5063 Score = 34.6 bits (79), Expect = 6.9, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 35/117 (29%) Query: 105 ETTEER------RLALVKVAHAYA------EKSKISVRNIR---RDGMDHLKKSRKS--- 146 + EER R + + E K +R I ++ M+ +K +K Sbjct: 4388 KMNEEREILTRLRSENTIMKKKFTSLQQDIEDQKEEIRAIEEKSKEIMETIKALKKDVVG 4447 Query: 147 --GKASE------D------MVASLENDIQK---ITDSTIKNIDSFFEEKKKEIMHF 186 + E D + +++K + D IK + E +++EI+ Sbjct: 4448 HQKEIREREETIQDKEKRIFDLKKKNQELEKFKFVLDYKIKELTRQIEPREQEIVEL 4504 >gi|325180532|emb|CCA14938.1| conserved unknown protein putative [Albugo laibachii Nc14] Length = 5081 Score = 34.6 bits (79), Expect = 6.9, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 35/117 (29%) Query: 105 ETTEER------RLALVKVAHAYA------EKSKISVRNIR---RDGMDHLKKSRKS--- 146 + EER R + + E K +R I ++ M+ +K +K Sbjct: 4367 KMNEEREILTRLRSENTIMKKKFTSLQQDIEDQKEEIRAIEEKSKEIMETIKALKKDVVG 4426 Query: 147 --GKASE------D------MVASLENDIQK---ITDSTIKNIDSFFEEKKKEIMHF 186 + E D + +++K + D IK + E +++EI+ Sbjct: 4427 HQKEIREREETIQDKEKRIFDLKKKNQELEKFKFVLDYKIKELTRQIEPREQEIVEL 4483 >gi|325180531|emb|CCA14937.1| conserved unknown protein putative [Albugo laibachii Nc14] Length = 5127 Score = 34.6 bits (79), Expect = 6.9, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 35/117 (29%) Query: 105 ETTEER------RLALVKVAHAYA------EKSKISVRNIR---RDGMDHLKKSRKS--- 146 + EER R + + E K +R I ++ M+ +K +K Sbjct: 4378 KMNEEREILTRLRSENTIMKKKFTSLQQDIEDQKEEIRAIEEKSKEIMETIKALKKDVVG 4437 Query: 147 --GKASE------D------MVASLENDIQK---ITDSTIKNIDSFFEEKKKEIMHF 186 + E D + +++K + D IK + E +++EI+ Sbjct: 4438 HQKEIREREETIQDKEKRIFDLKKKNQELEKFKFVLDYKIKELTRQIEPREQEIVEL 4494 >gi|325180529|emb|CCA14935.1| conserved unknown protein putative [Albugo laibachii Nc14] Length = 5096 Score = 34.6 bits (79), Expect = 6.9, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 35/117 (29%) Query: 105 ETTEER------RLALVKVAHAYA------EKSKISVRNIR---RDGMDHLKKSRKS--- 146 + EER R + + E K +R I ++ M+ +K +K Sbjct: 4367 KMNEEREILTRLRSENTIMKKKFTSLQQDIEDQKEEIRAIEEKSKEIMETIKALKKDVVG 4426 Query: 147 --GKASE------D------MVASLENDIQK---ITDSTIKNIDSFFEEKKKEIMHF 186 + E D + +++K + D IK + E +++EI+ Sbjct: 4427 HQKEIREREETIQDKEKRIFDLKKKNQELEKFKFVLDYKIKELTRQIEPREQEIVEL 4483 >gi|325180527|emb|CCA14933.1| conserved unknown protein putative [Albugo laibachii Nc14] Length = 5055 Score = 34.6 bits (79), Expect = 6.9, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 35/117 (29%) Query: 105 ETTEER------RLALVKVAHAYA------EKSKISVRNIR---RDGMDHLKKSRKS--- 146 + EER R + + E K +R I ++ M+ +K +K Sbjct: 4349 KMNEEREILTRLRSENTIMKKKFTSLQQDIEDQKEEIRAIEEKSKEIMETIKALKKDVVG 4408 Query: 147 --GKASE------D------MVASLENDIQK---ITDSTIKNIDSFFEEKKKEIMHF 186 + E D + +++K + D IK + E +++EI+ Sbjct: 4409 HQKEIREREETIQDKEKRIFDLKKKNQELEKFKFVLDYKIKELTRQIEPREQEIVEL 4465 >gi|325180526|emb|CCA14932.1| conserved unknown protein putative [Albugo laibachii Nc14] Length = 5073 Score = 34.6 bits (79), Expect = 6.9, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 35/117 (29%) Query: 105 ETTEER------RLALVKVAHAYA------EKSKISVRNIR---RDGMDHLKKSRKS--- 146 + EER R + + E K +R I ++ M+ +K +K Sbjct: 4367 KMNEEREILTRLRSENTIMKKKFTSLQQDIEDQKEEIRAIEEKSKEIMETIKALKKDVVG 4426 Query: 147 --GKASE------D------MVASLENDIQK---ITDSTIKNIDSFFEEKKKEIMHF 186 + E D + +++K + D IK + E +++EI+ Sbjct: 4427 HQKEIREREETIQDKEKRIFDLKKKNQELEKFKFVLDYKIKELTRQIEPREQEIVEL 4483 >gi|307546359|ref|YP_003898838.1| ATP-dependent protease ATP-binding subunit [Halomonas elongata DSM 2581] gi|307218383|emb|CBV43653.1| ATP-dependent protease ATP-binding subunit [Halomonas elongata DSM 2581] Length = 440 Score = 34.6 bits (79), Expect = 6.9, Method: Composition-based stats. Identities = 13/97 (13%), Positives = 36/97 (37%), Gaps = 7/97 (7%) Query: 84 HESNLGLNPIVEGQVLRIP--VPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLK 141 E ++ + P +G + P + E T + + + E +++V +D L+ Sbjct: 168 KEIDIEVTPQSQGVDIMTPPGMEEMTSQLQNLFSSMGKQKTETRRVAV----KDAFALLR 223 Query: 142 KSRKSGKASEDMVA-SLENDIQKITDSTIKNIDSFFE 177 + +ED + +++ + +D + Sbjct: 224 DEEAAKLVNEDDIKQRAIEAVEQHGIVFLDELDKVAK 260 >gi|221059671|ref|XP_002260481.1| hypothetical protein, conserved in Plasmodium species [Plasmodium knowlesi strain H] gi|193810554|emb|CAQ41748.1| hypothetical protein, conserved in Plasmodium species [Plasmodium knowlesi strain H] Length = 1229 Score = 34.6 bits (79), Expect = 7.0, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 5/78 (6%) Query: 107 TEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDM-VASLENDIQKIT 165 T+E + L+ + K + + R +D LKK + + S D + L++D Q+I Sbjct: 133 TKEEKKILIAQEKKF----KSVINDRRIKSLDDLKKMLRRNRNSRDDFMKKLQDDAQRIQ 188 Query: 166 DSTIKNIDSFFEEKKKEI 183 + + +K+EI Sbjct: 189 SQMEEQKNELLRNQKEEI 206 >gi|325180538|emb|CCA14944.1| conserved unknown protein putative [Albugo laibachii Nc14] Length = 5065 Score = 34.6 bits (79), Expect = 7.0, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 35/117 (29%) Query: 105 ETTEER------RLALVKVAHAYA------EKSKISVRNIR---RDGMDHLKKSRKS--- 146 + EER R + + E K +R I ++ M+ +K +K Sbjct: 4378 KMNEEREILTRLRSENTIMKKKFTSLQQDIEDQKEEIRAIEEKSKEIMETIKALKKDVVG 4437 Query: 147 --GKASE------D------MVASLENDIQK---ITDSTIKNIDSFFEEKKKEIMHF 186 + E D + +++K + D IK + E +++EI+ Sbjct: 4438 HQKEIREREETIQDKEKRIFDLKKKNQELEKFKFVLDYKIKELTRQIEPREQEIVEL 4494 >gi|325180530|emb|CCA14936.1| conserved unknown protein putative [Albugo laibachii Nc14] Length = 5063 Score = 34.6 bits (79), Expect = 7.0, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 35/117 (29%) Query: 105 ETTEER------RLALVKVAHAYA------EKSKISVRNIR---RDGMDHLKKSRKS--- 146 + EER R + + E K +R I ++ M+ +K +K Sbjct: 4349 KMNEEREILTRLRSENTIMKKKFTSLQQDIEDQKEEIRAIEEKSKEIMETIKALKKDVVG 4408 Query: 147 --GKASE------D------MVASLENDIQK---ITDSTIKNIDSFFEEKKKEIMHF 186 + E D + +++K + D IK + E +++EI+ Sbjct: 4409 HQKEIREREETIQDKEKRIFDLKKKNQELEKFKFVLDYKIKELTRQIEPREQEIVEL 4465 >gi|291279925|ref|YP_003496760.1| methyl-accepting chemotaxis protein [Deferribacter desulfuricans SSM1] gi|290754627|dbj|BAI81004.1| methyl-accepting chemotaxis protein [Deferribacter desulfuricans SSM1] Length = 814 Score = 34.6 bits (79), Expect = 7.0, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 52/123 (42%), Gaps = 16/123 (13%) Query: 68 VSVWDKEMVASVERGIHESNLGLN-------PIVEGQVLRIPVPETTEERRLALVKVAHA 120 +SVW ++ V+ ++ L L+ P+ G + + + EE + Sbjct: 406 MSVWVNAYLSKVDEEFKKTLLNLSEVGEKIVPVSNG---LVKIEQNAEENVQ-MASQVAT 461 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 +E+ ++ I R+ D K+ ++ K ++D +E + + ++ ++S E K Sbjct: 462 ASEEMSSTIAEIARNANDASIKADETVKITQDGAKLIEETV-----NYVEQVNSVLENLK 516 Query: 181 KEI 183 EI Sbjct: 517 VEI 519 >gi|221119871|ref|XP_002155805.1| PREDICTED: similar to predicted protein, partial [Hydra magnipapillata] Length = 1097 Score = 34.6 bits (79), Expect = 7.1, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 3/41 (7%) Query: 135 DGMDHLKKSRKSGKASEDMVASLEN---DIQKITDSTIKNI 172 D + K +K+ +D + LE +IQK+ + + I Sbjct: 217 DANNAYNKHKKNADKQKDEIKDLEKSLIEIQKLAKAYEQEI 257 >gi|325180535|emb|CCA14941.1| conserved unknown protein putative [Albugo laibachii Nc14] Length = 5035 Score = 34.6 bits (79), Expect = 7.1, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 35/117 (29%) Query: 105 ETTEER------RLALVKVAHAYA------EKSKISVRNIR---RDGMDHLKKSRKS--- 146 + EER R + + E K +R I ++ M+ +K +K Sbjct: 4360 KMNEEREILTRLRSENTIMKKKFTSLQQDIEDQKEEIRAIEEKSKEIMETIKALKKDVVG 4419 Query: 147 --GKASE------D------MVASLENDIQK---ITDSTIKNIDSFFEEKKKEIMHF 186 + E D + +++K + D IK + E +++EI+ Sbjct: 4420 HQKEIREREETIQDKEKRIFDLKKKNQELEKFKFVLDYKIKELTRQIEPREQEIVEL 4476 >gi|296413130|ref|XP_002836269.1| hypothetical protein [Tuber melanosporum Mel28] gi|295630082|emb|CAZ80460.1| unnamed protein product [Tuber melanosporum] Length = 401 Score = 34.6 bits (79), Expect = 7.1, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 2/53 (3%) Query: 125 SKISVRNIR--RDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSF 175 ++ V+ +R +D + LK+ SED + +LE + + D +K + Sbjct: 312 TREEVQRMRSTQDPIQGLKQKILEWGISEDELKALEKEAKASVDEEVKKAEEA 364 >gi|194761841|ref|XP_001963131.1| GF15792 [Drosophila ananassae] gi|190616828|gb|EDV32352.1| GF15792 [Drosophila ananassae] Length = 289 Score = 34.2 bits (78), Expect = 7.3, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 28/63 (44%) Query: 116 KVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSF 175 K H E R I+ D + L + + + ED + + +I++ D +K +++ Sbjct: 141 KRIHQEIELQSYLNRLIKGDMENRLAQLKLNDNLHEDQLKDKQQEIEQECDDHVKELNNI 200 Query: 176 FEE 178 F + Sbjct: 201 FSK 203 >gi|124513532|ref|XP_001350122.1| conserved Plasmodium protein, unknown function [Plasmodium falciparum 3D7] gi|23615539|emb|CAD52531.1| conserved Plasmodium protein, unknown function [Plasmodium falciparum 3D7] Length = 1936 Score = 34.2 bits (78), Expect = 7.3, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 27/56 (48%), Gaps = 5/56 (8%) Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFE--EKKKE 182 ++ + ++ D +K+ K ED++ LE + + + K + + EK+KE Sbjct: 366 IKRLEKEKEDVIKRLEKEK---EDVIKRLEKEKEDVIKGFEKEKEDIIKGFEKEKE 418 >gi|194744199|ref|XP_001954582.1| GF18340 [Drosophila ananassae] gi|190627619|gb|EDV43143.1| GF18340 [Drosophila ananassae] Length = 258 Score = 34.2 bits (78), Expect = 7.3, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 2/58 (3%) Query: 109 ERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKAS-EDMVASLENDIQKIT 165 ER K A+ AE ++ + ++ R + +K +K S + ++ N IQK T Sbjct: 199 ERNRENAKKANCAAEDARQRI-DVMRQLVSKIKNLKKKDLQSLKSLIRRRRNQIQKNT 255 >gi|157828020|ref|YP_001494262.1| hypothetical protein A1G_00840 [Rickettsia rickettsii str. 'Sheila Smith'] gi|157800501|gb|ABV75754.1| hypothetical protein A1G_00840 [Rickettsia rickettsii str. 'Sheila Smith'] Length = 1153 Score = 34.2 bits (78), Expect = 7.5, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 34/79 (43%), Gaps = 2/79 (2%) Query: 107 TEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITD 166 EE + + AE++ + ++ +++ K+ + S +++ +E+ Q ITD Sbjct: 1053 IEEMPALIAQKVKDTAEEA--EIDQKIKEELNNFNADVKNYEYSTEVLNKIEDRKQAITD 1110 Query: 167 STIKNIDSFFEEKKKEIMH 185 ID + ++ M Sbjct: 1111 EVNAQIDKINKYRENAKMQ 1129 >gi|158297514|ref|XP_317737.3| AGAP007777-PA [Anopheles gambiae str. PEST] gi|157015232|gb|EAA12167.3| AGAP007777-PA [Anopheles gambiae str. PEST] Length = 540 Score = 34.2 bits (78), Expect = 7.8, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 37/82 (45%), Gaps = 4/82 (4%) Query: 105 ETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKI 164 E R + + ++ +VR +RR+ L + + A+ED+ L + +K+ Sbjct: 136 EPNGSVRDEDDESVASKLDEVAATVRELRRE----LAELKSDRDATEDVNRQLLKETEKL 191 Query: 165 TDSTIKNIDSFFEEKKKEIMHF 186 +S + + D + ++++ F Sbjct: 192 VNSKLSSADEIISKMEEKLSQF 213 >gi|86135031|ref|ZP_01053613.1| PP-loop family protein [Polaribacter sp. MED152] gi|85821894|gb|EAQ43041.1| PP-loop family protein [Polaribacter sp. MED152] Length = 436 Score = 34.2 bits (78), Expect = 7.8, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 13/100 (13%) Query: 92 PIVEGQVLRIPVPETTEERRLALVKVAH----AYAEKSKIS----VRN-IRRDGMDHLKK 142 P + G ++R +P R ++ A + E + + VRN IR + LK+ Sbjct: 150 PAINGNIVRTLLP----FSRSEILNFAKSNNIEWREDASNASIKYVRNKIRHKVIPVLKE 205 Query: 143 SRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 S S ++Q+I + I ++ K+KE Sbjct: 206 INPSLLESFSNSIHHLKEVQEIVNDKIVDVTKQSVVKEKE 245 >gi|148554145|ref|YP_001261727.1| pyruvate dehydrogenase [Sphingomonas wittichii RW1] gi|148499335|gb|ABQ67589.1| Pyruvate dehydrogenase (acetyl-transferring) [Sphingomonas wittichii RW1] Length = 376 Score = 34.2 bits (78), Expect = 7.8, Method: Composition-based stats. Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 2/41 (4%) Query: 126 KISVRNIR--RDGMDHLKKSRKSGKASEDMVASLENDIQKI 164 + V+++R D +DHLKK ++ ED + +LE DI+ I Sbjct: 308 RDEVQSVREKSDPIDHLKKELEAAGVGEDELRTLEKDIRAI 348 >gi|119386478|ref|YP_917533.1| hypothetical protein Pden_3771 [Paracoccus denitrificans PD1222] gi|119377073|gb|ABL71837.1| hypothetical protein Pden_3771 [Paracoccus denitrificans PD1222] Length = 1099 Score = 34.2 bits (78), Expect = 8.0, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 4/70 (5%) Query: 101 IPVPETTEERRLALVKVAHAYAEKS-KISVRNIRRDGMDHLKKSRKS-GKASEDMVASLE 158 + + T+ R A+V +Y E K +RN++ G+ KK K G SE ++ S Sbjct: 706 VTISSLTDAVRPAMVHGLKSYMEDGLKPLIRNMQ--GIKLAKKEAKEAGAISEKILHSRL 763 Query: 159 NDIQKITDST 168 + +TD Sbjct: 764 ATLADLTDPY 773 >gi|270294777|ref|ZP_06200978.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270274024|gb|EFA19885.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 1043 Score = 34.2 bits (78), Expect = 8.1, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 13/72 (18%) Query: 115 VKVAHAYAEKSKISVRNIRRDGMDHLKKS-RKSGKASEDMVASLENDIQKITDSTIKNID 173 + A A ++K + L K+ G S+D + +L+ ++Q D + ++D Sbjct: 52 INDAKTAANEAKD-------KAQEALDKAGSAEGGVSDDDLKALKKELQDQIDK-LASLD 103 Query: 174 ----SFFEEKKK 181 K++ Sbjct: 104 IVNQKIAALKEE 115 >gi|329667903|gb|AEB93851.1| seryl-tRNA synthetase [Lactobacillus johnsonii DPC 6026] Length = 436 Score = 34.2 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 9/68 (13%) Query: 105 ETTEERRLALVK--VAHAYAEKSKISVRNIRR---DGMDHLKKSRKSGKASEDMVASLEN 159 +ERR AL K + + +R D D +K R+ GK + L+ Sbjct: 33 AIDKERREALTKSEQLKQKRNEVSDQIAQAKRNKEDASDAIKAMREVGK----EIKDLDK 88 Query: 160 DIQKITDS 167 +++ +T Sbjct: 89 EVEDLTQK 96 >gi|210611105|ref|ZP_03288735.1| hypothetical protein CLONEX_00925 [Clostridium nexile DSM 1787] gi|210152165|gb|EEA83172.1| hypothetical protein CLONEX_00925 [Clostridium nexile DSM 1787] Length = 1634 Score = 34.2 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 9/54 (16%) Query: 135 DGMDHLKKSRKSGKASEDMVASLENDIQK-------ITDSTIKNIDSFFEEKKK 181 D +D K +A+E+ V +D+QK I + ++ +E +K Sbjct: 1400 DAIDAAKAVIDDKEATEEQVKKAHDDLQKALFELRLIPNK--DKLEDLIKEAEK 1451 >gi|322790260|gb|EFZ15259.1| hypothetical protein SINV_10327 [Solenopsis invicta] Length = 481 Score = 34.2 bits (78), Expect = 8.4, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 20/89 (22%) Query: 106 TTEERRLAL---VKVAHA-------YAEKSKISVRNIR---RDGMDHLKKSRKSGKASED 152 T + R + K A EK+K N R + + + S D Sbjct: 124 MTLKERKEMEDSFKKAQKPWAKLLQKVEKAKSEYHNSCKTERTATNMERNASADSSLSPD 183 Query: 153 MVASLENDIQKITDSTIKNIDSFFEEKKK 181 V +++ +QK T + + K+K Sbjct: 184 QVKKMQDRVQK-TK------EEVLKAKEK 205 >gi|326427906|gb|EGD73476.1| hypothetical protein PTSG_12272 [Salpingoeca sp. ATCC 50818] Length = 468 Score = 34.2 bits (78), Expect = 8.7, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 14/93 (15%) Query: 104 PETTEERRLALVKVAHAYAEKSKISVRNIRRD-----GMDHLKKSRKSGKASEDMVASLE 158 P ++R L++ A + E+ +V + + G + KK AS D Sbjct: 338 PMPAHDKRHELLESA--FLEEGNQAVLRLTHEPTGLPGFEEYKKKIDDVMAS-DDFKRAL 394 Query: 159 NDIQKIT------DSTIKNIDSFFEEKKKEIMH 185 D+Q IT + I++ E K +E + Sbjct: 395 KDMQNITSDTDVLKAAIEHTKPKVEVKTQEFLE 427 >gi|253748146|gb|EET02472.1| Coiled-coil protein [Giardia intestinalis ATCC 50581] Length = 1247 Score = 34.2 bits (78), Expect = 8.7, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 52/149 (34%), Gaps = 28/149 (18%) Query: 46 YGSHVPLNQVANVTVLEPRMLVV-SVWDK-EMVASVERGIHESNLGLNPIVEGQVLRIPV 103 YG+ L V + + +V+ + + E+G ++L + + + Sbjct: 29 YGTTYSLPATQQVGKSDSITPGISTVYTQASSINRYEQGRTANDLHVQLMETKSR---SL 85 Query: 104 PETTEERRLAL-VKVAHAYAEKSKISVRN--------IRRDGMDHLKKSRKSGKASEDMV 154 + TE+R L + EK K + IR+ + L K + + ED Sbjct: 86 QDLTEKRLAELKLDQVIQENEKFKQKILQLDGELQAAIRQC--EELSKYKDAKAIIEDDH 143 Query: 155 ASLENDIQKITDSTIKNIDSFFEEKKKEI 183 I+ ++ +K+KEI Sbjct: 144 RQ------------IEELEHCLADKEKEI 160 >gi|253989400|ref|YP_003040756.1| pyruvate kinase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780850|emb|CAQ84012.1| pyruvate kinase [Photorhabdus asymbiotica] Length = 469 Score = 34.2 bits (78), Expect = 8.8, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 1/77 (1%) Query: 39 DLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQV 98 D V V G L N +++ ++ ++V + + + ++ +LG N V Sbjct: 104 DRVAVTYSGFPADLTP-GNTVLVDDGLIGMTVKEVTASEVICQVLNNGDLGENKGVNLPG 162 Query: 99 LRIPVPETTEERRLALV 115 + I +P E+ + L+ Sbjct: 163 ISISLPALAEKDKQDLI 179 >gi|205360086|ref|ZP_02834442.2| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205341189|gb|EDZ27953.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 320 Score = 34.2 bits (78), Expect = 8.8, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 21/93 (22%) Query: 112 LALVKVAHAYAEKSKISVRNIRRDGMDHLK------------KSRKSGKASEDMVASLEN 159 + K +K + N R ++ K +E ++ Sbjct: 135 EEINKNVEYEYADAKARL-NAER-ANKAIEYDTNALEDKYNNAQIKLRDINE-LIKEKGK 191 Query: 160 DIQKITDSTIKNIDSF------FEEKKKEIMHF 186 ++Q +T+S IDS E K+KE+M Sbjct: 192 EVQTVTNSYYNAIDSISKVRTELELKEKELMDL 224 >gi|71987383|ref|NP_490757.2| hypothetical protein F56A6.4 [Caenorhabditis elegans] Length = 479 Score = 34.2 bits (78), Expect = 8.9, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 5/64 (7%) Query: 116 KVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSF 175 K+ E +K + R+ K K K SE E + K T + I + Sbjct: 131 KLIQELRENAKRA-----REAEKERKTLEKDKKKSEMARRREEKEKDKETRKIEREISAA 185 Query: 176 FEEK 179 K Sbjct: 186 TNSK 189 >gi|330920648|ref|XP_003299088.1| hypothetical protein PTT_10019 [Pyrenophora teres f. teres 0-1] gi|311327357|gb|EFQ92808.1| hypothetical protein PTT_10019 [Pyrenophora teres f. teres 0-1] Length = 594 Score = 34.2 bits (78), Expect = 9.0, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 10/77 (12%) Query: 95 EGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRN----IRRDGMDHLKKSRKSGKAS 150 E + R+ EER AE ++ + R R + L++ RK + Sbjct: 417 EAETARLRAQVEAEEREQ------KRQAEAARKARRKQEQEEERKTLQFLEQERKQKELE 470 Query: 151 EDMVASLENDIQKITDS 167 E + ++ K T+ Sbjct: 471 EKERRRKQAEVDKETER 487 >gi|255102548|ref|ZP_05331525.1| putative cell surface protein [Clostridium difficile QCD-63q42] Length = 522 Score = 34.2 bits (78), Expect = 9.0, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 2/60 (3%) Query: 115 VKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDS 174 +K ++K K ++++ D +D LK + KA +D+ ++ ++ K+TD IK ++ Sbjct: 183 IKDKDKLSDKQKDKIKDLE-DKIDKLKGKLEKSKADKDLSTDMKKEMDKLTDK-IKELEK 240 >gi|255575054|ref|XP_002528432.1| heat shock protein, putative [Ricinus communis] gi|223532108|gb|EEF33915.1| heat shock protein, putative [Ricinus communis] Length = 649 Score = 34.2 bits (78), Expect = 9.0, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 14/92 (15%) Query: 105 ETTEERRLALVKVAHAY-AEK--------SKISVRNIRRDGMDHLKKSRKSGKASEDMVA 155 ++E +V+ A Y AE +K ++ N + + +K + S K S D Sbjct: 515 RLSKEEIEKMVQEAEKYKAEDEEHKKKIDAKNALENYAYNMRNTVKDEKISSKLSPDDKK 574 Query: 156 SLENDIQK----ITDSTIKNIDSFFEEKKKEI 183 +E+ I++ + + + D FE+K KE+ Sbjct: 575 KIEDAIEQAIQWLDANQLAEADE-FEDKMKEL 605 >gi|169334018|ref|ZP_02861211.1| hypothetical protein ANASTE_00411 [Anaerofustis stercorihominis DSM 17244] gi|169258735|gb|EDS72701.1| hypothetical protein ANASTE_00411 [Anaerofustis stercorihominis DSM 17244] Length = 328 Score = 34.2 bits (78), Expect = 9.0, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 6/53 (11%) Query: 134 RDGMDHLK-KSRKSGKASE---DMV-ASLENDIQKITDSTIKNIDSFFEEKKK 181 D +D K +E D + +E +I + K +D K+ Sbjct: 270 HDAIDKFKNDLIAMNMITEEEFDELDKKIEKEIDDAAEKA-KKVDEIISVKEA 321 >gi|156094726|ref|XP_001613399.1| hypothetical protein [Plasmodium vivax SaI-1] gi|148802273|gb|EDL43672.1| hypothetical protein, conserved [Plasmodium vivax] Length = 1832 Score = 34.2 bits (78), Expect = 9.0, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 30/89 (33%), Gaps = 14/89 (15%) Query: 102 PVPETTEERRLALVKVAHAYAE--KSKISVRNIRRDGMDHL--KKSRKSGKASEDMVASL 157 V + E+ V+ AE K+ ++ +RD D+ K +K E Sbjct: 85 NVQKNVEKNVQKNVEKNEKEAERNKACREIKKKQRDANDYFCTDKMKKQHTYEEREKFVF 144 Query: 158 ENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 E +I K+ D EIM Sbjct: 145 EQEIGKVHDVYNGE----------EIMKI 163 >gi|42519649|ref|NP_965579.1| seryl-tRNA synthetase [Lactobacillus johnsonii NCC 533] gi|227889410|ref|ZP_04007215.1| seryl-tRNA synthetase [Lactobacillus johnsonii ATCC 33200] gi|67461827|sp|Q74HZ5|SYS_LACJO RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec) synthetase gi|41583938|gb|AAS09545.1| seryl-tRNA synthetase [Lactobacillus johnsonii NCC 533] gi|227850042|gb|EEJ60128.1| seryl-tRNA synthetase [Lactobacillus johnsonii ATCC 33200] Length = 436 Score = 34.2 bits (78), Expect = 9.0, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 9/68 (13%) Query: 105 ETTEERRLALVK--VAHAYAEKSKISVRNIRR---DGMDHLKKSRKSGKASEDMVASLEN 159 +ERR AL K + + +R D D +K R+ GK + L+ Sbjct: 33 AIDKERREALTKSEQLKQKRNEVSDQIAQAKRNKEDASDAIKAMREVGK----EIKDLDK 88 Query: 160 DIQKITDS 167 +++ +T Sbjct: 89 EVEDLTQK 96 >gi|162417827|ref|YP_001604601.1| putative phage tail tape measure protein [Yersinia pestis Angola] gi|162350799|gb|ABX84748.1| putative phage tail tape measure protein [Yersinia pestis Angola] Length = 1521 Score = 34.2 bits (78), Expect = 9.1, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 33/100 (33%) Query: 116 KVAHAYAEKSKISVR-----------NIRRDGMDHLKKSRKSGKASEDMV---------- 154 ++A AE +R R++ +D ++K S+D Sbjct: 722 RLAKEAAESQIEKIRADNQVFSATFVKARQEALDKIQKINDDKSLSDDEKNKLLAPLREK 781 Query: 155 --ASLENDIQKI----------TDSTIKNIDSFFEEKKKE 182 S QK+ T+ I + E+ KKE Sbjct: 782 VNKSYLEPAQKLVYDLSSRKNATEKQIAHFSDMLEKAKKE 821 >gi|294636114|ref|ZP_06714540.1| pyruvate kinase [Edwardsiella tarda ATCC 23685] gi|291090581|gb|EFE23142.1| pyruvate kinase [Edwardsiella tarda ATCC 23685] Length = 473 Score = 34.2 bits (78), Expect = 9.3, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 52/144 (36%), Gaps = 15/144 (10%) Query: 39 DLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQV 98 + V V G L ++ N +++ ++ + V D V + ++ +LG N V Sbjct: 107 ERVAVTYPGFAADL-RIGNTVLVDDGLIGMEVIDVSESTVVCKVLNNGDLGENKGVNLPG 165 Query: 99 LRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLE 158 + I +P E+ + LV E+ V ++K + E + A Sbjct: 166 VSIQLPALAEKDKRDLV----FGCEQGVDFV------AASFIRKRADVLEIREHLKAHGG 215 Query: 159 NDIQKITD----STIKNIDSFFEE 178 IQ I+ + N D E Sbjct: 216 EQIQIISKIENQEGLNNFDEILEA 239 >gi|300765878|ref|ZP_07075852.1| phage tail tape measure protein [Listeria monocytogenes FSL N1-017] gi|300513455|gb|EFK40528.1| phage tail tape measure protein [Listeria monocytogenes FSL N1-017] Length = 1678 Score = 34.2 bits (78), Expect = 9.3, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 35/81 (43%), Gaps = 12/81 (14%) Query: 105 ETTEERRLALVKVAHAYAEKSKISVRNIR--------RDGMDHLKKSRKSGKASEDMVAS 156 + + ++R A VK A+ + +K + R ++ + +K+++K + D Sbjct: 963 KNSAKQRNATVKEANKEFKDTKRILDEKRFVTGEIGEKEYREAIKQAKKKKDGTIDEAEK 1022 Query: 157 LENDI----QKITDSTIKNID 173 + ++ QK +K +D Sbjct: 1023 MHKEVVNQAQKQAKGHLKEVD 1043 >gi|253579397|ref|ZP_04856667.1| predicted protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849495|gb|EES77455.1| predicted protein [Ruminococcus sp. 5_1_39BFAA] Length = 241 Score = 33.8 bits (77), Expect = 9.4, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 10/73 (13%) Query: 107 TEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITD 166 TEE+ V E + +R RR ++K+ K+ + +E + IQ+ + Sbjct: 59 TEEQTQEFV---AKEEEAA--QIREERR-----VEKAEKASEKAEQEKTAALESIQQTVE 108 Query: 167 STIKNIDSFFEEK 179 T K I E K Sbjct: 109 DTKKKIAEEAEAK 121 >gi|16082793|ref|NP_395347.1| hypothetical protein YPMT1.11c [Yersinia pestis CO92] gi|31795187|ref|NP_857648.1| hypothetical protein YPKMT011 [Yersinia pestis KIM] gi|31795374|ref|NP_857827.1| hypothetical protein Y1044 [Yersinia pestis KIM] gi|108793743|ref|YP_636580.1| membrane protein [Yersinia pestis Nepal516] gi|145597203|ref|YP_001154666.1| membrane protein [Yersinia pestis Pestoides F] gi|149192788|ref|YP_001294019.1| hypothetical protein YPE_4305 [Yersinia pestis CA88-4125] gi|165939456|ref|ZP_02228003.1| putative phage tail tape measure protein [Yersinia pestis biovar Orientalis str. IP275] gi|166012157|ref|ZP_02233055.1| putative phage tail tape measure protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166214373|ref|ZP_02240408.1| putative phage tail tape measure protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167422813|ref|ZP_02314566.1| putative phage tail tape measure protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426931|ref|ZP_02318684.1| putative phage tail tape measure protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167466670|ref|ZP_02331374.1| hypothetical protein YpesF_02000 [Yersinia pestis FV-1] gi|229896939|ref|ZP_04512098.1| putative membrane protein [Yersinia pestis Pestoides A] gi|229897769|ref|ZP_04512924.1| putative membrane protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229900280|ref|ZP_04515415.1| putative membrane protein [Yersinia pestis biovar Orientalis str. India 195] gi|229904802|ref|ZP_04519912.1| putative membrane protein [Yersinia pestis Nepal516] gi|270490988|ref|ZP_06208061.1| phage tail tape measure protein, lambda family [Yersinia pestis KIM D27] gi|294502003|ref|YP_003565740.1| hypothetical protein YPZ3_pMT0011 [Yersinia pestis Z176003] gi|2996290|gb|AAC13170.1| protein HI1514 homolog [Yersinia pestis KIM 10] gi|3883044|gb|AAC82704.1| unknown [Yersinia pestis KIM 10] gi|5834696|emb|CAB55193.1| putative membrane protein [Yersinia pestis CO92] gi|108777807|gb|ABG20325.1| membrane protein [Yersinia pestis Nepal516] gi|145212971|gb|ABP42376.1| membrane protein [Yersinia pestis Pestoides F] gi|148872446|gb|ABR14935.1| putative membrane protein [Yersinia pestis CA88-4125] gi|165912644|gb|EDR31274.1| putative phage tail tape measure protein [Yersinia pestis biovar Orientalis str. IP275] gi|165988923|gb|EDR41224.1| putative phage tail tape measure protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166204431|gb|EDR48911.1| putative phage tail tape measure protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166958306|gb|EDR55327.1| putative phage tail tape measure protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167054098|gb|EDR63925.1| putative phage tail tape measure protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229678117|gb|EEO74223.1| putative membrane protein [Yersinia pestis Nepal516] gi|229686639|gb|EEO78720.1| putative membrane protein [Yersinia pestis biovar Orientalis str. India 195] gi|229693350|gb|EEO83400.1| putative membrane protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229699975|gb|EEO88015.1| putative membrane protein [Yersinia pestis Pestoides A] gi|262363897|gb|ACY60616.1| hypothetical protein YPD4_pMT0011 [Yersinia pestis D106004] gi|262364053|gb|ACY64389.1| hypothetical protein YPD8_pMT0011 [Yersinia pestis D182038] gi|270334969|gb|EFA45747.1| phage tail tape measure protein, lambda family [Yersinia pestis KIM D27] gi|294352474|gb|ADE66530.1| hypothetical protein YPZ3_pMT0011 [Yersinia pestis Z176003] gi|320017533|gb|ADW01103.1| putative membrane protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 1525 Score = 33.8 bits (77), Expect = 9.4, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 33/100 (33%) Query: 116 KVAHAYAEKSKISVR-----------NIRRDGMDHLKKSRKSGKASEDMV---------- 154 ++A AE +R R++ +D ++K S+D Sbjct: 726 RLAKEAAESQIEKIRADNQVFSATFVKARQEALDKIQKINDDKSLSDDEKNKLLAPLREK 785 Query: 155 --ASLENDIQKI----------TDSTIKNIDSFFEEKKKE 182 S QK+ T+ I + E+ KKE Sbjct: 786 VNKSYLEPAQKLVYDLSSRKNATEKQIAHFSDMLEKAKKE 825 >gi|301606019|ref|XP_002932631.1| PREDICTED: myomegalin-like [Xenopus (Silurana) tropicalis] Length = 1207 Score = 33.8 bits (77), Expect = 9.6, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 6/85 (7%) Query: 102 PVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDI 161 +P+ + E R ++ + I RD L+ +K +S + ++E D+ Sbjct: 876 SLPQLSNENR-----ALREENLSLQVRINQISRDYFKELENLQKLLSSSRAQLKNVETDL 930 Query: 162 QKITDSTIKNIDSFFEEKKKEIMHF 186 ++ T + K + ++K++EI+H Sbjct: 931 EQKTQES-KKLQEELDQKQQEILHL 954 >gi|291298657|ref|YP_003509935.1| hypothetical protein Snas_1132 [Stackebrandtia nassauensis DSM 44728] gi|290567877|gb|ADD40842.1| hypothetical protein Snas_1132 [Stackebrandtia nassauensis DSM 44728] Length = 300 Score = 33.8 bits (77), Expect = 9.7, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 8/64 (12%) Query: 104 PETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQK 163 P E+ L K AE K D LK + K K + + E +++ Sbjct: 4 PAYAEDEVHKLEKKLEKAAEAYK--------DAKKDLKDAEKKQKKLKKDIKDGEKKVEE 55 Query: 164 ITDS 167 +TD Sbjct: 56 LTDE 59 >gi|282852800|ref|ZP_06262141.1| serine--tRNA ligase [Lactobacillus gasseri 224-1] gi|282555908|gb|EFB61529.1| serine--tRNA ligase [Lactobacillus gasseri 224-1] Length = 436 Score = 33.8 bits (77), Expect = 9.7, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 9/68 (13%) Query: 105 ETTEERRLALVK--VAHAYAEKSKISVRNIRR---DGMDHLKKSRKSGKASEDMVASLEN 159 +ERR AL K + + +R D D +K R+ GK + L+ Sbjct: 33 AIDKERREALTKSEQLKQKRNEVSDQIAQAKRNKEDASDAIKAMREVGK----EIKDLDK 88 Query: 160 DIQKITDS 167 +++ +T Sbjct: 89 EVEDLTQK 96 >gi|294084442|ref|YP_003551200.1| BLUF domain-containing protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292664015|gb|ADE39116.1| BLUF domain protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 411 Score = 33.8 bits (77), Expect = 9.8, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 64/167 (38%), Gaps = 4/167 (2%) Query: 10 IKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV---LEPRML 66 K+R+ + + L + ++L V+V + L A V + + R Sbjct: 16 CKNRIEAMLDGYIHSLNELASLDTLKNILYGVRVVIDYRNRHLTDFAEVHLENDPKARFF 75 Query: 67 VVSVWDKEMVASVERGIHESNLG-LNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 VSV ++V V R + + + + L I + + ++R L A + Sbjct: 76 SVSVTRLDIVRDVRRVMRSAGFDEMKFDEDNMTLWIIIKRPSYDQRHELALEASRLERAT 135 Query: 126 KISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNI 172 + + N++RD ++ L+ + E + I+ I T++ I Sbjct: 136 RQAAANVKRDTLERLRAAVDREYIEEFDIKPTMETIETIYARTVEQI 182 >gi|238852918|ref|ZP_04643319.1| serine--tRNA ligase [Lactobacillus gasseri 202-4] gi|238834454|gb|EEQ26690.1| serine--tRNA ligase [Lactobacillus gasseri 202-4] Length = 436 Score = 33.8 bits (77), Expect = 9.8, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 9/68 (13%) Query: 105 ETTEERRLALVK--VAHAYAEKSKISVRNIRR---DGMDHLKKSRKSGKASEDMVASLEN 159 +ERR AL K + + +R D D +K R+ GK + L+ Sbjct: 33 AIDKERREALTKSEQLKQKRNEVSDQIAQAKRNKEDASDAIKAMREVGK----EIKDLDK 88 Query: 160 DIQKITDS 167 +++ +T Sbjct: 89 EVEDLTQK 96 >gi|60683499|ref|YP_213643.1| recombination enzyme [Bacteroides fragilis NCTC 9343] gi|60494933|emb|CAH09749.1| possible recombination enzyme [Bacteroides fragilis NCTC 9343] Length = 505 Score = 33.8 bits (77), Expect = 9.8, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 14/89 (15%) Query: 108 EERRLALVKVAHAYAEKS----KISVRNIR------RDGMDHLKKSRKSGKASEDMVASL 157 + L K A AEK+ + +RN+ R ++ +K SGK + D + Sbjct: 233 RDYIRKLTKEAKQ-AEKAVKGLQSMMRNLESKIFSYRLQLEETEKELASGKITLDRYEAQ 291 Query: 158 ENDIQKITDSTIKNID---SFFEEKKKEI 183 + DIQK+ ++ K++E+ Sbjct: 292 KADIQKLIAEYQTKLEDKTDKLHAKEQEL 320 >gi|319234039|ref|NP_001187381.1| inhibitor of growth family, member 5a [Ictalurus punctatus] gi|308322865|gb|ADO28570.1| inhibitor of growth protein 5 [Ictalurus punctatus] Length = 235 Score = 33.8 bits (77), Expect = 9.9, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 10/82 (12%) Query: 107 TEERRLALVKVAHAYAEKSKISVRNIR-RDGMDHLKKSR----KSGKASEDMVASLENDI 161 TEE++ + +A Y E VRN+ + + HLKK K + S+D V I Sbjct: 35 TEEKKEEIDGLASEYIEN----VRNLSPEERVQHLKKIELAYSKCKEFSDDKVQLAM-QI 89 Query: 162 QKITDSTIKNIDSFFEEKKKEI 183 ++ D I+ +D+ + E+ Sbjct: 90 YELVDKHIRRLDADLARFENEL 111 >gi|301610455|ref|XP_002934764.1| PREDICTED: LOW QUALITY PROTEIN: myosin-9-like [Xenopus (Silurana) tropicalis] Length = 1947 Score = 33.8 bits (77), Expect = 9.9, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 2/70 (2%) Query: 97 QVLRIPVPETTEERRLAL--VKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMV 154 Q +R + EE L K EK+K S+ R + + +K + SE Sbjct: 1175 QEIRQKHSQAVEELSEQLEQTKRLKGNLEKAKQSLEGERNELANEVKALLQGKGDSEHKR 1234 Query: 155 ASLENDIQKI 164 +E +Q++ Sbjct: 1235 KKVEGQLQEL 1244 >gi|118443186|ref|YP_877383.1| DNA modification methylase [Clostridium novyi NT] gi|118133642|gb|ABK60686.1| DNA modification methylase, putative [Clostridium novyi NT] Length = 1191 Score = 33.8 bits (77), Expect = 9.9, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Query: 129 VRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNI 172 + NI + M +KK + +G+ SE ++IQ+ D + + Sbjct: 1144 INNIVDEAM-QIKKKQFNGEISEKETKDKLDEIQQKVDDFVYKL 1186 >gi|300722821|ref|YP_003712113.1| pyruvate kinase I (formerly F), fructose-stimulated [Xenorhabdus nematophila ATCC 19061] gi|297629330|emb|CBJ89929.1| pyruvate kinase I (formerly F), fructose-stimulated [Xenorhabdus nematophila ATCC 19061] Length = 469 Score = 33.8 bits (77), Expect = 10.0, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 1/77 (1%) Query: 39 DLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQV 98 D V V G L V V + ++ ++V + + ++ +LG N V Sbjct: 104 DRVAVTYAGLPADLAPGKTVLVDDG-LIAMTVKEITATEVICEVLNNGDLGENKGVNLPN 162 Query: 99 LRIPVPETTEERRLALV 115 + I +P E+ + LV Sbjct: 163 VSINLPALAEKDKQDLV 179 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.313 0.180 0.560 Lambda K H 0.267 0.0552 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,469,757,150 Number of Sequences: 14124377 Number of extensions: 245891394 Number of successful extensions: 1165599 Number of sequences better than 10.0: 5601 Number of HSP's better than 10.0 without gapping: 4492 Number of HSP's successfully gapped in prelim test: 3298 Number of HSP's that attempted gapping in prelim test: 1147292 Number of HSP's gapped (non-prelim): 18112 length of query: 186 length of database: 4,842,793,630 effective HSP length: 131 effective length of query: 55 effective length of database: 2,992,500,243 effective search space: 164587513365 effective search space used: 164587513365 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.0 bits) S2: 78 (34.2 bits)