BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780776|ref|YP_003065189.1| ribosome recycling factor
[Candidatus Liberibacter asiaticus str. psy62]
         (186 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780776|ref|YP_003065189.1| ribosome recycling factor [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 186

 Score =  379 bits (972), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 186/186 (100%), Positives = 186/186 (100%)

Query: 1   MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60
           MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV
Sbjct: 1   MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60

Query: 61  LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120
           LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA
Sbjct: 61  LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120

Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180
           YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK
Sbjct: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180

Query: 181 KEIMHF 186
           KEIMHF
Sbjct: 181 KEIMHF 186


>gi|254780410|ref|YP_003064823.1| hypothetical protein CLIBASIA_01475 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 362

 Score = 25.8 bits (55), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 8/58 (13%)

Query: 4   VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61
           VID   ++ R+GDT+  +K    T  +  V+P   DL       SHV   +++++ +L
Sbjct: 238 VIDYGYLQSRVGDTLQAVKGH--TYVSPLVNPGQADL------SSHVDFQRLSSIAIL 287


>gi|255764460|ref|YP_003064605.2| recombinase A [Candidatus Liberibacter asiaticus str. psy62]
          Length = 363

 Score = 24.3 bits (51), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 74  EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120
           E+V+S   G+ +  LG+    +G+++ I  PE++ +  LAL  +A +
Sbjct: 46  EVVSSGSLGL-DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91


>gi|254780970|ref|YP_003065383.1| phosphoribosylformylglycinamidine synthase II [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 737

 Score = 23.1 bits (48), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 33  VSPSMLDLVKVEAYGSHVPLNQVANVT 59
           +SP   DLV  EA   ++PL  +  V+
Sbjct: 677 ISPENQDLVMSEANNKNIPLRYLGKVS 703


>gi|254780559|ref|YP_003064972.1| thiamine transporter ATP-binding subunit [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 234

 Score = 22.7 bits (47), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 10/43 (23%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 90  LNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132
            +P +  ++L + + +  +ER+L L+ ++H   +  +I+ R I
Sbjct: 160 FDPALRHEILGL-LKQVCDERQLTLLMISHNLEDSMQIATRFI 201


>gi|254780395|ref|YP_003064808.1| organic solvent tolerance protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 762

 Score = 21.9 bits (45), Expect = 7.0,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 7/62 (11%)

Query: 78  SVERGIHESNLGLNP-------IVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130
           S  R +    +  NP       +  G  +R P+   T++ R  L  +A  YA   +  ++
Sbjct: 474 SFNRDLSSDTISNNPNFVASKMLTAGLDIRYPIVAVTQKSRHILEGIAQVYAATDEKYIK 533

Query: 131 NI 132
            I
Sbjct: 534 TI 535


>gi|254780799|ref|YP_003065212.1| DNA translocase FtsK [Candidatus Liberibacter asiaticus str. psy62]
          Length = 806

 Score = 21.6 bits (44), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 8/23 (34%), Positives = 14/23 (60%)

Query: 153 MVASLENDIQKITDSTIKNIDSF 175
           +V  +E   QK++   ++NID F
Sbjct: 526 LVCEMEERYQKMSKIGVRNIDGF 548


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.316    0.131    0.355 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,057
Number of Sequences: 1233
Number of extensions: 4195
Number of successful extensions: 18
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 12
length of query: 186
length of database: 328,796
effective HSP length: 69
effective length of query: 117
effective length of database: 243,719
effective search space: 28515123
effective search space used: 28515123
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 36 (18.5 bits)