HHsearch alignment for GI: 254780777 and conserved domain: COG0527
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism].
Probab=100.00 E-value=1.3e-38 Score=257.76 Aligned_cols=221 Identities=24% Similarity=0.282 Sum_probs=177.2
Q ss_pred CEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC--CHHHHHHHCC-----------------
Q ss_conf 249999940036853887770899999999999999976990999823654--1023344203-----------------
Q gi|254780777|r 6 YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGN--IFRGSQVVAE----------------- 66 (242)
Q Consensus 6 ~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~--~~~~~~~~~~----------------- 66 (242)
T Consensus 1 m~~iV~KFGGTSva~-------~e~i~~va~iv~~~~~~g~~vVVVvSA~~~vTd~Lv~~a~~~~~~~~~~~~~~~~~~~ 73 (447)
T COG0527 1 MRLIVQKFGGTSVAD-------AERILRVADIVKEDSEEGVKVVVVVSAMGGVTDLLVALAEGAESGRDAVAEQRHRDIA 73 (447)
T ss_pred CCEEEEEECCCCCCC-------HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 950899868755388-------8999999999985463397189997898774589999986331445205788899999
Q ss_pred --CCCC--------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH-
Q ss_conf --7777--------------------------54024678888898999999999997618864113400100245665-
Q gi|254780777|r 67 --NYLL--------------------------CERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVF- 117 (242)
Q Consensus 67 --~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 117 (242)
T Consensus 74 ~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~lls~GE~~Sa~lla~~L~~~Gv~A~~~~~~~~~i~t~~~~ 153 (447)
T COG0527 74 SELILDPFIAARLAEVIAEFKKVLLGIALLGEVSPRERDELLSLGERLSAALLAAALNALGVDARSLDGRQAGIATDSNH 153 (447)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHCCCCEEEECHHHCEEEECCCC
T ss_conf 98741510456676666666676666664147987899999850548899999999996799659975588425535766
Q ss_pred --------HHHH-HCCHHHHCCCCCCCCCC---------CCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf --------4321-00001100111112465---------56777621578888864164466514754351234322344
Q gi|254780777|r 118 --------SCRN-AVSYLSQGKVVIFSGGT---------GNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHA 179 (242)
Q Consensus 118 --------~~~~-~~~~~~~~~~~~~~~~~---------~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~ 179 (242)
T Consensus 154 ~~a~i~~~~~~~~l~~~~~~~~v~Vv~GF~G~~~~G~~tTLGRGGSD~SA~~laa~l~Ad~~~I~TDVdGI~TaDPRiVp 233 (447)
T COG0527 154 GNARILDEDSERRLLRLLEEGKVPVVAGFQGINEDGETTTLGRGGSDYSAAALAAALGADEVEIWTDVDGVYTADPRIVP 233 (447)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEECCCEEECCCCCEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC
T ss_conf 65531035566667887446977995186651699988984798478899999997199889999878877568997788
Q ss_pred CCCCCCCCCHHHHHHC---CCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEECCC
Q ss_conf 4444441159999855---99814099999999749969995189854799997799878246689
Q gi|254780777|r 180 SSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIISGE 242 (242)
Q Consensus 180 ~ak~i~~is~~e~l~~---G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~~~ 242 (242)
T Consensus 234 ~Ar~i~~isyeEa~ELA~~GAkVLHprav~pa~~~~Ip~~i~~t~~p---------~~~GTlI~~~ 290 (447)
T COG0527 234 DARLLPEISYEEALELAYLGAKVLHPRAVEPAMRSGIPLRIKNTFNP---------DAPGTLITAE 290 (447)
T ss_pred CCEECCCCCHHHHHHHHHCCCHHCCHHHHHHHHHCCCCEEEEECCCC---------CCCCEEEECC
T ss_conf 64576846999999999778521499888899876991899716999---------9995399567