HHsearch alignment for GI: 254780777 and conserved domain: COG1608
>COG1608 Predicted archaeal kinase [General function prediction only].
Probab=99.98 E-value=1.3e-31 Score=214.64 Aligned_cols=231 Identities=20% Similarity=0.205 Sum_probs=178.3
Q ss_pred EEEEEEEEEEECCC-CCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCC--CCCCCHHHHHHHHHHHHH
Q ss_conf 99994003685388-777089999999999999997699099982365410233442037--777540246788888989
Q gi|254780777|r 9 VLLKVSGEALAGIS-GFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAEN--YLLCERSTVDSMGMLSTV 85 (242)
Q Consensus 9 IViKiGGSsL~~~~-~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 85 (242)
T Consensus 3 ~IlKlGGSvITdK~~p~t~r~~~l~ria~eI~~--~~~~~livVHGgGSFGHp~Ak~~~~~~~~~~~s~~G~~~~~~am~ 80 (252)
T COG1608 3 IILKLGGSVITDKDKPRTVREDRLRRIAREISN--GKPEKLIVVHGGGSFGHPAAKEFGLEGLKNYLSPLGFSLTHLAML 80 (252)
T ss_pred EEEEECCEEEECCCCCCHHHHHHHHHHHHHHHC--CCCCCEEEEECCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 899955616525887321118999999999845--995438999458665678899707654446667434399999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHH---HHHHHHHHHCCHHHHCCCCCCCCC------CCCCCCCCHHHHHHHHHHH
Q ss_conf 9999999999761886411340010024---566543210000110011111246------5567776215788888641
Q gi|254780777|r 86 INALALDLALRKINVPTVILSSIFMPQV---CEVFSCRNAVSYLSQGKVVIFSGG------TGNAFLTTDSAAALRASEI 156 (242)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~D~~a~~ia~~~ 156 (242)
T Consensus 81 ~L~~~V~~~l~~~Gv~av~~~P~s~~~~~gr~~~~~l~~i~~~l~~gfvPvl~GDVv~d~~~g~~IiSGDdIv~~LA~~l 160 (252)
T COG1608 81 ELNSIVVDALLDAGVRAVSVVPISFSTFNGRILYTYLEAIKDALEKGFVPVLYGDVVPDDDNGYEIISGDDIVLHLAKEL 160 (252)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCEEECCCCEEECHHHHHHHHHHCCCEEEEECCEEECCCCCEEEEECCHHHHHHHHHH
T ss_conf 99999999998669853222686403317703220299999998769876233346874898548985118999999974
Q ss_pred CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC-------CCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHH
Q ss_conf 644665147543512343223444444441159999855-------9981409999999974996999518985479999
Q gi|254780777|r 157 GADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIEK-------GLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGG 229 (242)
Q Consensus 157 ~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~~-------G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~ 229 (242)
T Consensus 161 ~pd~v~f~tdVdGVy~~~p~~~p~~~~l~~i~~~~~~~gs~~~DVTGGi~~Kl~~~~~~~~~~~~vyi~ng~~~~ni~~~ 240 (252)
T COG1608 161 KPDRVIFLTDVDGVYDRDPGKVPDARLLSEIEGRVALGGSGGTDVTGGIAKKLEALLEIARYGKEVYIFNGNKPENIYRA 240 (252)
T ss_pred CCCEEEEEECCCCEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHH
T ss_conf 98779998457823568987486620001443234306867621313399999999998735863899878777789999
Q ss_pred HCCCCCCCEECC
Q ss_conf 779987824668
Q gi|254780777|r 230 LSGIGRSTIISG 241 (242)
Q Consensus 230 l~Ge~~GT~I~~ 241 (242)
T Consensus 241 l~G~~vGT~I~~ 252 (252)
T COG1608 241 LRGENVGTRIDG 252 (252)
T ss_pred HCCCCCCEEECC
T ss_conf 658877548469