HHsearch alignment for GI: 254780777 and conserved domain: COG1608

>COG1608 Predicted archaeal kinase [General function prediction only].
Probab=99.98  E-value=1.3e-31  Score=214.64  Aligned_cols=231  Identities=20%  Similarity=0.205  Sum_probs=178.3

Q ss_pred             EEEEEEEEEEECCC-CCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCC--CCCCCHHHHHHHHHHHHH
Q ss_conf             99994003685388-777089999999999999997699099982365410233442037--777540246788888989
Q gi|254780777|r    9 VLLKVSGEALAGIS-GFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAEN--YLLCERSTVDSMGMLSTV   85 (242)
Q Consensus         9 IViKiGGSsL~~~~-~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~   85 (242)
T Consensus         3 ~IlKlGGSvITdK~~p~t~r~~~l~ria~eI~~--~~~~~livVHGgGSFGHp~Ak~~~~~~~~~~~s~~G~~~~~~am~   80 (252)
T COG1608           3 IILKLGGSVITDKDKPRTVREDRLRRIAREISN--GKPEKLIVVHGGGSFGHPAAKEFGLEGLKNYLSPLGFSLTHLAML   80 (252)
T ss_pred             EEEEECCEEEECCCCCCHHHHHHHHHHHHHHHC--CCCCCEEEEECCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             899955616525887321118999999999845--995438999458665678899707654446667434399999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCHHHHH---HHHHHHHHHCCHHHHCCCCCCCCC------CCCCCCCCHHHHHHHHHHH
Q ss_conf             9999999999761886411340010024---566543210000110011111246------5567776215788888641
Q gi|254780777|r   86 INALALDLALRKINVPTVILSSIFMPQV---CEVFSCRNAVSYLSQGKVVIFSGG------TGNAFLTTDSAAALRASEI  156 (242)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~D~~a~~ia~~~  156 (242)
T Consensus        81 ~L~~~V~~~l~~~Gv~av~~~P~s~~~~~gr~~~~~l~~i~~~l~~gfvPvl~GDVv~d~~~g~~IiSGDdIv~~LA~~l  160 (252)
T COG1608          81 ELNSIVVDALLDAGVRAVSVVPISFSTFNGRILYTYLEAIKDALEKGFVPVLYGDVVPDDDNGYEIISGDDIVLHLAKEL  160 (252)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCEEECCCCEEECHHHHHHHHHHCCCEEEEECCEEECCCCCEEEEECCHHHHHHHHHH
T ss_conf             99999999998669853222686403317703220299999998769876233346874898548985118999999974


Q ss_pred             CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC-------CCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHH
Q ss_conf             644665147543512343223444444441159999855-------9981409999999974996999518985479999
Q gi|254780777|r  157 GADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIEK-------GLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGG  229 (242)
Q Consensus       157 ~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~~-------G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~  229 (242)
T Consensus       161 ~pd~v~f~tdVdGVy~~~p~~~p~~~~l~~i~~~~~~~gs~~~DVTGGi~~Kl~~~~~~~~~~~~vyi~ng~~~~ni~~~  240 (252)
T COG1608         161 KPDRVIFLTDVDGVYDRDPGKVPDARLLSEIEGRVALGGSGGTDVTGGIAKKLEALLEIARYGKEVYIFNGNKPENIYRA  240 (252)
T ss_pred             CCCEEEEEECCCCEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHH
T ss_conf             98779998457823568987486620001443234306867621313399999999998735863899878777789999


Q ss_pred             HCCCCCCCEECC
Q ss_conf             779987824668
Q gi|254780777|r  230 LSGIGRSTIISG  241 (242)
Q Consensus       230 l~Ge~~GT~I~~  241 (242)
T Consensus       241 l~G~~vGT~I~~  252 (252)
T COG1608         241 LRGENVGTRIDG  252 (252)
T ss_pred             HCCCCCCEEECC
T ss_conf             658877548469