HHsearch alignment for GI: 254780777 and conserved domain: TIGR00657

>TIGR00657 asp_kinases aspartate kinase; InterPro: IPR001341 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see . Aspartate kinase (2.7.2.4 from EC) (AK) catalyzes the first reaction in the aspartate pathway; the phosphorylation of aspartate. The product of this reaction can then be used in the biosynthesis of lysine or in the pathway leading to homoserine, which participates in the biosynthesis of threonine, isoleucine and methionine . In bacteria there are three different aspartate kinase isozymes which differ in sensitivity to repression and inhibition by Lys, Met and Thr. AK1 and AK2 are bifunctional enzymes which both consist of an N-terminal AK domain and a C-terminal homoserine dehydrogenase domain. AK1 is involved in threonine biosynthesis and AK2, in that of methionine. The third isozyme, AK3 is monofunctional and involved in lysine synthesis. In archaea and plants there may be a single isozyme of AK which in plants is multifunctional. This entry represents a region encoding aspartate kinase activity found in both the monofunctional and bifunctional enzymes. Synonym(s): Aspartokinase; GO: 0004072 aspartate kinase activity, 0008652 amino acid biosynthetic process.
Probab=100.00  E-value=2.8e-42  Score=280.29  Aligned_cols=221  Identities=22%  Similarity=0.271  Sum_probs=178.1

Q ss_pred             CEEEEEEEEEEEEECCCCCCCCH--HHHHHHHHHHHHHHHCCCEEEEEECCCC--CHHHHHHHC----------------
Q ss_conf             24999994003685388777089--9999999999999976990999823654--102334420----------------
Q gi|254780777|r    6 YKRVLLKVSGEALAGISGFGVDI--DSVNRICADIAEVYAKGIEIGIVVGGGN--IFRGSQVVA----------------   65 (242)
Q Consensus         6 ~KrIViKiGGSsL~~~~~~~~~~--~~i~~ia~~I~~~~~~g~~vviV~sg~~--~~~~~~~~~----------------   65 (242)
T Consensus         1 m~~iV~KFGGTSVg~-------~PverI~~~A~~v~~~~~~g~~vvVVVSA~~g~Td~Lv~~~~~~~~~~~~~~~~~~~~   73 (504)
T TIGR00657         1 MMLIVQKFGGTSVGN-------APVERIRRVAKIVLKEKEKGNQVVVVVSAMAGVTDALVELAEKVSPGPSAAQEKEFLE   73 (504)
T ss_pred             CCEEEEEECCEEECC-------CCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf             974799736757667-------3237899999988887535897389997377533689999986046443303679999


Q ss_pred             -----------------------------------------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CC
Q ss_conf             -----------------------------------------37777540246788888989999999999976188--64
Q gi|254780777|r   66 -----------------------------------------ENYLLCERSTVDSMGMLSTVINALALDLALRKINV--PT  102 (242)
Q Consensus        66 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  102 (242)
T Consensus        74 ~Ir~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~L~~~~~LGe~~~~~~D~ilS~GE~~S~~l~~~~l~~~G~K~~~  153 (504)
T TIGR00657        74 KIREKHLEILERLIIPQAIAEKLKRLLDAELVLLKKVLLGISYLGEVTPREMDRILSVGERLSIALLSAALEELGVKAKA  153 (504)
T ss_pred             HHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCC
T ss_conf             99984000477740773368999999998899999999987873468868744131203588899999999745785201


Q ss_pred             CCCCCCHHHHH--------------HHHHHHHHHCCHHHHC-CCCCCCCCC---------CCCCCCCHHHHHHHHHHHCH
Q ss_conf             11340010024--------------5665432100001100-111112465---------56777621578888864164
Q gi|254780777|r  103 VILSSIFMPQV--------------CEVFSCRNAVSYLSQG-KVVIFSGGT---------GNAFLTTDSAAALRASEIGA  158 (242)
Q Consensus       103 ~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~~~D~~a~~ia~~~~a  158 (242)
T Consensus       154 ~~l~~~~~~I~T~~~~~~A~p~~~~~~~~~~~rL~~~L~~g~~ipvvaGF~G~~~~g~~TtLGRGGSD~tA~llA~aL~A  233 (504)
T TIGR00657       154 VSLTGAQAGILTDSNFGRARPDLAVIIEILTERLEPLLEEGDIIPVVAGFQGATEKGEITTLGRGGSDYTAALLAAALKA  233 (504)
T ss_pred             CCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHCC
T ss_conf             22114745455447667641202467776699999998469879998400410577507983068068999999986199


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC---CCCCCCHHHHHHHHH-CCCCEEEEECCCCCHHHHHHCCCC
Q ss_conf             4665147543512343223444444441159999855---998140999999997-499699951898547999977998
Q gi|254780777|r  159 DVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLARD-CSIPIIVFSIHSPGGIWGGLSGIG  234 (242)
Q Consensus       159 d~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~~---G~~v~~~~A~~~a~~-~gI~v~I~ng~~~~~i~~~l~Ge~  234 (242)
T Consensus       234 d~~~IyTDV~Gi~T~DPR~V~~Ar~i~~isy~Em~ELA~~GAKVLHPr~~ep~~~~~~ip~~v~st~~~---------~a  304 (504)
T TIGR00657       234 DECEIYTDVDGIYTTDPRIVPDARRIDEISYEEMLELASFGAKVLHPRTLEPAMRDYKIPIVVKSTFNP---------EA  304 (504)
T ss_pred             CEEEEEECCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCEEEECCCCC---------CC
T ss_conf             689998727950327886376652045448789999985031653278899984679951899607788---------99


Q ss_pred             CCCEECCC
Q ss_conf             78246689
Q gi|254780777|r  235 RSTIISGE  242 (242)
Q Consensus       235 ~GT~I~~~  242 (242)
T Consensus       305 ~GT~I~~~  312 (504)
T TIGR00657       305 PGTLIVAS  312 (504)
T ss_pred             CCEEECCC
T ss_conf             96687177