HHsearch alignment for GI: 254780777 and conserved domain: cd04235
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=99.66 E-value=3.7e-15 Score=113.11 Aligned_cols=226 Identities=21% Similarity=0.239 Sum_probs=133.9
Q ss_pred EEEEEEEEEEEECCCCC-CC--CHHHHHHHHHHHHHHHHCCCEEEEEECCCCCH-HHHHHHC---CCCCCCCHHHH--HH
Q ss_conf 99999400368538877-70--89999999999999997699099982365410-2334420---37777540246--78
Q gi|254780777|r 8 RVLLKVSGEALAGISGF-GV--DIDSVNRICADIAEVYAKGIEIGIVVGGGNIF-RGSQVVA---ENYLLCERSTV--DS 78 (242)
Q Consensus 8 rIViKiGGSsL~~~~~~-~~--~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~-~~~~~~~---~~~~~~~~~~~--~~ 78 (242)
T Consensus 1 riViALGGNAl~~~g~~~t~~~Q~~~v~~~a~~ia~l~~~G~~vVitHGNGPQVG~ll~~~~~~~~~~p~~Pld~~~A~s 80 (308)
T cd04235 1 RIVVALGGNALLRRGEPGTAEEQRENVKIAAKALADLIKNGHEVVITHGNGPQVGNLLLQNEAAAEKVPAYPLDVCGAMS 80 (308)
T ss_pred CEEEEECHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf 98999573650899999999999999999999999999869979998699518999999888624678998620464653
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCC--------------------------CCHHHHHHHHH-----------H---
Q ss_conf 8888989999999999976188641134--------------------------00100245665-----------4---
Q gi|254780777|r 79 MGMLSTVINALALDLALRKINVPTVILS--------------------------SIFMPQVCEVF-----------S--- 118 (242)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~-----------~--- 118 (242)
T Consensus 81 QG~IGy~lq-qal~n~l~~~~~~~~v~t~vTqv~Vd~~DpAF~~PtKpIGpfy~~eeA~~l~~~~g~~~~eD~grg~RRV 159 (308)
T cd04235 81 QGMIGYMLQ-QALDNELPKRGIDKPVVTLVTQVVVDANDPAFKNPTKPIGPFYSEEEAEELAAEKGWTFKEDAGRGYRRV 159 (308)
T ss_pred HHHHHHHHH-HHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCEEEE
T ss_conf 059999999-9999999854899845999989998899832238888657775999999999845978974288640578
Q ss_pred -----------HHHHCCHHHHCCCCCCCCCCCCC-------------CCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCC
Q ss_conf -----------32100001100111112465567-------------776215788888641644665147543512343
Q gi|254780777|r 119 -----------CRNAVSYLSQGKVVIFSGGTGNA-------------FLTTDSAAALRASEIGADVILKGTQVDGVYSAD 174 (242)
Q Consensus 119 -----------~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~d 174 (242)
T Consensus 160 VpSP~P~~IvE~~~I~~L~~~g~ivIa~GGGGIPVv~~~~~~~GveAVIDKD~aaa~LA~~l~Ad~liiLTdV~~V~~n~ 239 (308)
T cd04235 160 VPSPKPKDIVEIEAIKTLVDNGVIVIAAGGGGIPVVREGGGLKGVEAVIDKDLASALLAEEINADLLVILTDVDNVYINF 239 (308)
T ss_pred ECCCCCCEEECHHHHHHHHHCCCEEEEECCCCCCEECCCCCEECCEEEECCHHHHHHHHHHCCCCEEEEEECCHHHHHCC
T ss_conf 66999814546999999997798899828986546824995443110213438889999863898899971641687628
Q ss_pred CCCCCCCCCCCCCCHHHHHH--------CCCCCCCHHHHHHHHHCCC-CEEEEECCCCCHHHHHHCCCCCCCEEC
Q ss_conf 22344444444115999985--------5998140999999997499-699951898547999977998782466
Q gi|254780777|r 175 PRVHASSTRFDSLTYNQFIE--------KGLKVMDCASVVLARDCSI-PIIVFSIHSPGGIWGGLSGIGRSTIIS 240 (242)
Q Consensus 175 P~~~~~ak~i~~is~~e~l~--------~G~~v~~~~A~~~a~~~gI-~v~I~ng~~~~~i~~~l~Ge~~GT~I~ 240 (242)
T Consensus 240 g--~p~q~~L~~it~~e~~~~~~~g~F~~GSM~PKv~Aai~fv~~gg~~a~I---tsl~~~~~al~G-~~GT~I~ 308 (308)
T cd04235 240 G--KPNQKALEQVTVEELEKYIEEGQFAPGSMGPKVEAAIRFVESGGKKAII---TSLENAEAALEG-KAGTVIV 308 (308)
T ss_pred C--CCCCHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEE---CCHHHHHHHHCC-CCCCEEC
T ss_conf 9--9860022148899999999769988898369999999999948987999---989999999679-9995879