HHsearch alignment for GI: 254780777 and conserved domain: cd04235

>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=99.66  E-value=3.7e-15  Score=113.11  Aligned_cols=226  Identities=21%  Similarity=0.239  Sum_probs=133.9

Q ss_pred             EEEEEEEEEEEECCCCC-CC--CHHHHHHHHHHHHHHHHCCCEEEEEECCCCCH-HHHHHHC---CCCCCCCHHHH--HH
Q ss_conf             99999400368538877-70--89999999999999997699099982365410-2334420---37777540246--78
Q gi|254780777|r    8 RVLLKVSGEALAGISGF-GV--DIDSVNRICADIAEVYAKGIEIGIVVGGGNIF-RGSQVVA---ENYLLCERSTV--DS   78 (242)
Q Consensus         8 rIViKiGGSsL~~~~~~-~~--~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~-~~~~~~~---~~~~~~~~~~~--~~   78 (242)
T Consensus         1 riViALGGNAl~~~g~~~t~~~Q~~~v~~~a~~ia~l~~~G~~vVitHGNGPQVG~ll~~~~~~~~~~p~~Pld~~~A~s   80 (308)
T cd04235           1 RIVVALGGNALLRRGEPGTAEEQRENVKIAAKALADLIKNGHEVVITHGNGPQVGNLLLQNEAAAEKVPAYPLDVCGAMS   80 (308)
T ss_pred             CEEEEECHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf             98999573650899999999999999999999999999869979998699518999999888624678998620464653


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCC--------------------------CCHHHHHHHHH-----------H---
Q ss_conf             8888989999999999976188641134--------------------------00100245665-----------4---
Q gi|254780777|r   79 MGMLSTVINALALDLALRKINVPTVILS--------------------------SIFMPQVCEVF-----------S---  118 (242)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~-----------~---  118 (242)
T Consensus        81 QG~IGy~lq-qal~n~l~~~~~~~~v~t~vTqv~Vd~~DpAF~~PtKpIGpfy~~eeA~~l~~~~g~~~~eD~grg~RRV  159 (308)
T cd04235          81 QGMIGYMLQ-QALDNELPKRGIDKPVVTLVTQVVVDANDPAFKNPTKPIGPFYSEEEAEELAAEKGWTFKEDAGRGYRRV  159 (308)
T ss_pred             HHHHHHHHH-HHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCEEEE
T ss_conf             059999999-9999999854899845999989998899832238888657775999999999845978974288640578


Q ss_pred             -----------HHHHCCHHHHCCCCCCCCCCCCC-------------CCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCC
Q ss_conf             -----------32100001100111112465567-------------776215788888641644665147543512343
Q gi|254780777|r  119 -----------CRNAVSYLSQGKVVIFSGGTGNA-------------FLTTDSAAALRASEIGADVILKGTQVDGVYSAD  174 (242)
Q Consensus       119 -----------~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~d  174 (242)
T Consensus       160 VpSP~P~~IvE~~~I~~L~~~g~ivIa~GGGGIPVv~~~~~~~GveAVIDKD~aaa~LA~~l~Ad~liiLTdV~~V~~n~  239 (308)
T cd04235         160 VPSPKPKDIVEIEAIKTLVDNGVIVIAAGGGGIPVVREGGGLKGVEAVIDKDLASALLAEEINADLLVILTDVDNVYINF  239 (308)
T ss_pred             ECCCCCCEEECHHHHHHHHHCCCEEEEECCCCCCEECCCCCEECCEEEECCHHHHHHHHHHCCCCEEEEEECCHHHHHCC
T ss_conf             66999814546999999997798899828986546824995443110213438889999863898899971641687628


Q ss_pred             CCCCCCCCCCCCCCHHHHHH--------CCCCCCCHHHHHHHHHCCC-CEEEEECCCCCHHHHHHCCCCCCCEEC
Q ss_conf             22344444444115999985--------5998140999999997499-699951898547999977998782466
Q gi|254780777|r  175 PRVHASSTRFDSLTYNQFIE--------KGLKVMDCASVVLARDCSI-PIIVFSIHSPGGIWGGLSGIGRSTIIS  240 (242)
Q Consensus       175 P~~~~~ak~i~~is~~e~l~--------~G~~v~~~~A~~~a~~~gI-~v~I~ng~~~~~i~~~l~Ge~~GT~I~  240 (242)
T Consensus       240 g--~p~q~~L~~it~~e~~~~~~~g~F~~GSM~PKv~Aai~fv~~gg~~a~I---tsl~~~~~al~G-~~GT~I~  308 (308)
T cd04235         240 G--KPNQKALEQVTVEELEKYIEEGQFAPGSMGPKVEAAIRFVESGGKKAII---TSLENAEAALEG-KAGTVIV  308 (308)
T ss_pred             C--CCCCHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEE---CCHHHHHHHHCC-CCCCEEC
T ss_conf             9--9860022148899999999769988898369999999999948987999---989999999679-9995879